Query 037553
Match_columns 151
No_of_seqs 130 out of 1060
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 23:19:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037553.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037553hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2po1_A Probable exosome comple 100.0 1.5E-32 5.3E-37 216.8 15.7 126 26-151 5-134 (249)
2 2wnr_B Probable exosome comple 100.0 3.2E-32 1.1E-36 213.8 15.7 120 32-151 11-134 (240)
3 2nn6_F MTR3, exosome component 100.0 2.6E-33 9E-38 223.7 9.5 137 13-151 4-155 (272)
4 2nn6_B Exosome complex exonucl 100.0 6.2E-32 2.1E-36 213.3 15.0 122 27-151 9-136 (249)
5 3m7n_D Probable exosome comple 100.0 4.8E-32 1.6E-36 215.4 14.2 118 34-151 13-134 (258)
6 2je6_B RRP41, exosome complex 100.0 1.8E-31 6E-36 210.7 16.3 125 24-151 10-138 (250)
7 2wp8_B Exosome complex compone 100.0 3.1E-31 1.1E-35 208.9 16.2 124 25-151 3-133 (246)
8 3dd6_A Ribonuclease PH; exorib 100.0 1.9E-30 6.5E-35 205.8 14.5 121 31-151 5-133 (255)
9 1udn_A Ribonuclease PH, RNAse 100.0 3.4E-30 1.2E-34 204.1 15.7 115 37-151 1-123 (255)
10 1oys_A Ribonuclease PH; transf 100.0 1.2E-30 4.1E-35 205.4 11.5 115 37-151 1-123 (245)
11 3b4t_A Ribonuclease PH; RNAse, 100.0 3.7E-30 1.3E-34 204.5 13.3 118 34-151 3-128 (262)
12 1r6l_A Ribonuclease PH; beta-a 100.0 9.7E-30 3.3E-34 199.4 15.1 115 37-151 2-124 (239)
13 2nn6_D Exosome complex exonucl 100.0 6.2E-29 2.1E-33 194.9 14.0 117 30-151 9-129 (237)
14 3m7n_G Probable exosome comple 100.0 3.3E-29 1.1E-33 198.7 12.3 124 27-151 12-146 (259)
15 2je6_A RRP42, exosome complex 100.0 7.3E-29 2.5E-33 198.2 12.5 132 19-151 11-153 (277)
16 2nn6_C Exosome complex exonucl 100.0 1.6E-29 5.4E-34 202.0 7.9 132 19-151 6-148 (278)
17 3hkm_A OS03G0854200 protein; R 100.0 3.9E-28 1.3E-32 191.7 15.2 112 35-151 2-113 (246)
18 2po1_B Probable exosome comple 100.0 2.4E-28 8.2E-33 195.3 12.0 126 24-151 13-150 (277)
19 2wnr_A Probable exosome comple 100.0 2E-28 6.9E-33 195.0 10.5 127 23-151 10-148 (271)
20 3gme_A Polyribonucleotide nucl 99.9 3.6E-27 1.2E-31 203.4 13.3 118 33-151 310-436 (549)
21 4aid_A Polyribonucleotide nucl 99.9 8.6E-27 3E-31 206.2 14.5 118 33-151 326-452 (726)
22 2nn6_E Exosome complex exonucl 99.9 2.2E-27 7.4E-32 192.2 8.9 125 26-151 25-160 (305)
23 1e3p_A Guanosine pentaphosphat 99.9 2.7E-26 9.1E-31 204.2 13.5 117 34-151 352-477 (757)
24 3u1k_A Polyribonucleotide nucl 99.9 3.4E-26 1.2E-30 200.3 12.8 117 33-151 314-442 (630)
25 2nn6_A Polymyositis/scleroderm 99.9 1.3E-26 4.3E-31 191.7 8.7 121 27-151 29-160 (358)
26 2wp8_A Exosome complex compone 99.9 2E-26 6.7E-31 186.5 8.7 122 26-151 12-145 (305)
27 3cdi_A Polynucleotide phosphor 99.9 2.9E-25 9.9E-30 196.9 12.8 118 33-151 316-442 (723)
28 3krn_A Protein C14A4.5, confir 99.9 2.7E-24 9.4E-29 167.1 -4.6 101 44-151 2-102 (222)
29 3u1k_A Polyribonucleotide nucl 99.7 2.7E-16 9.1E-21 137.8 12.6 99 47-151 14-122 (630)
30 3gme_A Polyribonucleotide nucl 99.4 9.8E-13 3.4E-17 113.6 13.1 100 47-151 13-122 (549)
31 4aid_A Polyribonucleotide nucl 99.4 1.3E-12 4.5E-17 115.9 13.4 100 47-151 27-136 (726)
32 1e3p_A Guanosine pentaphosphat 99.4 2.2E-12 7.6E-17 115.0 12.7 100 47-151 36-146 (757)
33 3cdi_A Polynucleotide phosphor 99.4 2.9E-12 9.9E-17 113.8 13.1 99 48-151 20-128 (723)
34 1whu_A Polynucleotide phosphor 92.1 0.07 2.4E-06 35.9 2.0 22 23-48 82-103 (104)
No 1
>2po1_A Probable exosome complex exonuclease 1; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_A* 2pnz_A 2po2_A*
Probab=100.00 E-value=1.5e-32 Score=216.79 Aligned_cols=126 Identities=33% Similarity=0.499 Sum_probs=112.9
Q ss_pred cCcccCCCCCCCCCCCCCCCCCcceEEEeCCcCCCCeEEEEEECCeEEEEEEEcCccccc-ccccCceeEEEEEEEecCC
Q 037553 26 PPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK-AMMYSNIGRLNCNVSYTTF 104 (151)
Q Consensus 26 ~~~~~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~adGSa~v~~G~T~Vl~~V~gp~~~~~-~~~~~~~g~l~v~v~~~p~ 104 (151)
|+-++..+++++|+|||.++|+|++.+++|+++++||||+|++|+|+|+|+|+||.+..+ +.+.+++|+|+|+|++.||
T Consensus 5 p~~~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~v~~~~~p~ 84 (249)
T 2po1_A 5 PEGLKLIDENGRRIDGRKKYELRPIKMEVGVLKNANGSAYIEWGKNKIIAAVYGPRELHPKHLQRPDRAILRVRYNMAPF 84 (249)
T ss_dssp ----CCSBCSSCBTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEEECSSGGGCCSSSCEEEEEEEECGG
T ss_pred CcceEEecccCccCCCCCcccccCEEEEeCCcCCCCEEEEEEECCcEEEEEEEcCcccCcccccCCCceEEEEEEEeCCc
Confidence 333344468999999999999999999999999999999999999999999999887543 5677999999999999999
Q ss_pred cccccC---CCchHHHHHHHHHHHHHhhhccCCCCCcEEEEEEEEEecCC
Q 037553 105 ATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151 (151)
Q Consensus 105 a~~~r~---~~~~~~~l~~~l~~~l~~~I~l~~~p~~~I~I~v~VL~~DG 151 (151)
|+++++ +++++.+++++|+++|+++|++++||+|.|+|+++||++||
T Consensus 85 a~~~~~~~~~~~~~~~~s~li~r~l~~~i~l~~~p~~~i~I~~~VL~~dG 134 (249)
T 2po1_A 85 SVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTAIDVFIEVLQADA 134 (249)
T ss_dssp GSSSCCCSSCCHHHHHHHHHHHHHHGGGBCGGGSTTEEEEEEEEEEECCS
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHhhccHHHCCCCEEEEEEEEEecCC
Confidence 998653 77899999999999999999999999999999999999998
No 2
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=3.2e-32 Score=213.82 Aligned_cols=120 Identities=33% Similarity=0.612 Sum_probs=108.9
Q ss_pred CCCCCCCCCCCCCCCCcceEEEeCCcCCCCeEEEEEECCeEEEEEEEcCccccc-ccccCceeEEEEEEEecCCcccccC
Q 037553 32 SDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK-AMMYSNIGRLNCNVSYTTFATPIRG 110 (151)
Q Consensus 32 ~~~~~~R~DGR~~~e~R~i~i~~g~l~~adGSa~v~~G~T~Vl~~V~gp~~~~~-~~~~~~~g~l~v~v~~~p~a~~~r~ 110 (151)
.+++++|+|||+++|+|++++++|+++++||||+|++|+|+|+|+|+||.+..+ +...+++|+|+|+|+++||++++++
T Consensus 11 ~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~p~a~~~~~ 90 (240)
T 2wnr_B 11 KTSPSVREDGRAFDELRPLKIEAGILERADGSSYLEFGGNKILVAVYGPREAQIRKLQRPDRAVIRCRYNMAPFSVEERK 90 (240)
T ss_dssp ----CCCTTSCCTTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECCSSSSCCSSSCEEEEEEEECTTSSSSCC
T ss_pred ecccCccCCCCCcCCccCeEEEeCCCCCCCEEEEEEECCeEEEEEEEcCCCCCcccccCCCcEEEEEEEEeCCCCcCCcc
Confidence 368999999999999999999999999999999999999999999999887533 4577999999999999999999753
Q ss_pred ---CCchHHHHHHHHHHHHHhhhccCCCCCcEEEEEEEEEecCC
Q 037553 111 ---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151 (151)
Q Consensus 111 ---~~~~~~~l~~~l~~~l~~~I~l~~~p~~~I~I~v~VL~~DG 151 (151)
+++++.+++++|+++|+++|+++.||+|+|+|+++||++||
T Consensus 91 ~~~~~~~~~~l~~ll~r~l~~~i~l~~~p~~~I~i~~~VL~~dG 134 (240)
T 2wnr_B 91 RPGPDRRSVEISKITAEALRPALILEKFPRSVIDVFIEVLEAEG 134 (240)
T ss_dssp CSSCCHHHHHHHHHHHHHHGGGBCGGGSTTEEEEEEEEEEECCS
T ss_pred CCCCChhHHHHHHHHHHHHHHhcCHHHCCCcEEEEEEEEEeCCC
Confidence 77899999999999999999999999999999999999998
No 3
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=2.6e-33 Score=223.71 Aligned_cols=137 Identities=32% Similarity=0.539 Sum_probs=100.9
Q ss_pred cccccCCCCCCCCcCcccCCCCCCCCCCCCCCCCCcceEEEeCCcCCCCeEEEEEECCeEEEEEEEcCcccccccc----
Q 037553 13 ATYSPIDPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMM---- 88 (151)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~adGSa~v~~G~T~Vl~~V~gp~~~~~~~~---- 88 (151)
||||..+|.....+..|.. ++++|+|||.++|+|++++++|++++|||||+|++|+|+|+|+|+||.+.+...+
T Consensus 4 d~rr~~gp~~~~~~~~~~~--~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~ 81 (272)
T 2nn6_F 4 DHRRIRGPEESQPPQLYAA--DEEEAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGP 81 (272)
T ss_dssp ---------------------------CCCCSSCCCCCCCCCSCCSSSSEEECCCSSSCEEEEEEEEEECC---------
T ss_pred ccccccCCCcccCCccccc--ccCccCCCCCccccCCeEEEeCCCCCCCeEEEEEeCCeEEEEEEECCCccccccccccc
Confidence 8999999997666656633 7889999999999999999999999999999999999999999999998765433
Q ss_pred --------cCceeEEEEEEEecCCcccccC---CCchHHHHHHHHHHHHHhhhccCCCCCcEEEEEEEEEecCC
Q 037553 89 --------YSNIGRLNCNVSYTTFATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151 (151)
Q Consensus 89 --------~~~~g~l~v~v~~~p~a~~~r~---~~~~~~~l~~~l~~~l~~~I~l~~~p~~~I~I~v~VL~~DG 151 (151)
.+++++|+|+|++.||+++++. +++++.+++++|+++|+++|++++||+|.|+|+++||++||
T Consensus 82 ~~~~~~~~~~~~g~l~v~~~~~p~a~~~~~~~~~~~~e~~~s~li~r~l~~~i~~~~~p~~~I~I~~~VL~~DG 155 (272)
T 2nn6_F 82 AGAGGEAPAALRGRLLCDFRRAPFAGRRRRAPPGGCEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGG 155 (272)
T ss_dssp ----------CBCEEEEEEEECTTSSSSCCCSCCHHHHHHHHHHHHHHHTTTBCSTTSBTCEEEEEEEEEECCS
T ss_pred ccccccccCCCceEEEEEEEecCCCcCCccCCCCCHHHHHHHHHHHHHHHHhccHHHCCceEEEEEEEEEeCCC
Confidence 5788999999999999999653 66789999999999999999999999999999999999998
No 4
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=99.98 E-value=6.2e-32 Score=213.32 Aligned_cols=122 Identities=30% Similarity=0.476 Sum_probs=110.6
Q ss_pred CcccCCCCCCCCCCCCCCCCCcceEEEeCCcCCCCeEEEEEECCeEEEEEEEcCccccc--ccccCceeEEEEEEEecCC
Q 037553 27 PIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK--AMMYSNIGRLNCNVSYTTF 104 (151)
Q Consensus 27 ~~~~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~adGSa~v~~G~T~Vl~~V~gp~~~~~--~~~~~~~g~l~v~v~~~p~ 104 (151)
+++ +++++|+|||+++|+|++++++|+++++||||+|++|+|+|+|+|+||.+.+. ....+++|+|+|+|+++||
T Consensus 9 ~~i---~~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~~~~~~~~~~~g~l~~~~~~~p~ 85 (249)
T 2nn6_B 9 ELL---SDQGYRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATF 85 (249)
T ss_dssp --C---CBTTBCSSSSCTTSCCCEEEEESCSSSSSEEEEEEESSCEEEEEEEEEEECCSSSCCCCCSSCCEEEEEEECTT
T ss_pred hhc---ccCCcCCCCCCcCCcCCeEEEeCCCCCCCeEEEEEECCeEEEEEEEccCCccccccccCCCcEEEEEEEEcCCC
Confidence 555 48999999999999999999999999999999999999999999999987532 1257899999999999999
Q ss_pred cccccC----CCchHHHHHHHHHHHHHhhhccCCCCCcEEEEEEEEEecCC
Q 037553 105 ATPIRG----QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151 (151)
Q Consensus 105 a~~~r~----~~~~~~~l~~~l~~~l~~~I~l~~~p~~~I~I~v~VL~~DG 151 (151)
+++++. +++++.+++++|+++|+++|++++||+|.|+|+++||++||
T Consensus 86 a~~~~~~~~~~~~~~~~~~~ll~r~l~~~i~~~~~p~~~I~i~~~VL~~dG 136 (249)
T 2nn6_B 86 STGERKRRPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADG 136 (249)
T ss_dssp TSSSCCCTTTSTHHHHHHHHHHHHHHHHTTCGGGCTTEEEEEEEEEEECCS
T ss_pred cccccccCCCCCHhHHHHHHHHHHHHHHhcCHHHCCCcEEEEEEEEEeCCC
Confidence 998653 67799999999999999999999999999999999999998
No 5
>3m7n_D Probable exosome complex exonuclease 1; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 3m85_D 2ba0_F 2ba1_E
Probab=99.98 E-value=4.8e-32 Score=215.38 Aligned_cols=118 Identities=31% Similarity=0.531 Sum_probs=110.1
Q ss_pred CCCCCCCCCCCCCCcceEEEeCCcCCCCeEEEEEECCeEEEEEEEcCccccc-ccccCceeEEEEEEEecCCcccccC--
Q 037553 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKK-AMMYSNIGRLNCNVSYTTFATPIRG-- 110 (151)
Q Consensus 34 ~~~~R~DGR~~~e~R~i~i~~g~l~~adGSa~v~~G~T~Vl~~V~gp~~~~~-~~~~~~~g~l~v~v~~~p~a~~~r~-- 110 (151)
.+++|+|||+++|+|+|++++|+++++||||+|++|+|+|+|+|+||.+..+ ..+.+++|+|+|+|++.||+++++.
T Consensus 13 ~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~g~l~~~~~~~P~s~~~r~~~ 92 (258)
T 3m7n_D 13 VDGLRLDGRKFDELRPIKIEASVLKRADGSCYLEMGKNKVIAAVFGPREVHPEHLQDPSKAIIRYRYNMAPFSVEERKRP 92 (258)
T ss_dssp ETTEETTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEEECSSSTTCCSSSCEEEEEEEECGGGSSSCCCS
T ss_pred hcCCCCCCCCcCCccCeEEEECCCCCCCceEEEEECCeEEEEEEEcccCCCCccccCCCceEEEEEEEeCCcccccccCC
Confidence 5899999999999999999999999999999999999999999999987543 3467999999999999999998653
Q ss_pred -CCchHHHHHHHHHHHHHhhhccCCCCCcEEEEEEEEEecCC
Q 037553 111 -QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151 (151)
Q Consensus 111 -~~~~~~~l~~~l~~~l~~~I~l~~~p~~~I~I~v~VL~~DG 151 (151)
+++++.+++++|+++|+++|+++.||+|.|+|+++||++||
T Consensus 93 ~~~~re~ei~~li~r~l~~~i~~~~~p~~~I~V~~~VL~~DG 134 (258)
T 3m7n_D 93 GPDRRSIEISKVSKEAFEAVIMKELFPRSAIDIFVEVLQADA 134 (258)
T ss_dssp SCCHHHHHHHHHHHHHHHTTBCGGGSTTEEEEEEEEEEECCT
T ss_pred CCCHHHHHHHHHHHHHHHhhcCHHhCCceEEEEEEEEEEcCC
Confidence 67899999999999999999999999999999999999998
No 6
>2je6_B RRP41, exosome complex exonuclease 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_B* 2jeb_B* 2br2_B 2c37_B* 2c38_B* 2c39_B* 3l7z_B
Probab=99.98 E-value=1.8e-31 Score=210.74 Aligned_cols=125 Identities=32% Similarity=0.518 Sum_probs=114.5
Q ss_pred CCcCcccCCCCCCCCCCCCCCCCCcceEEEeCCcCCCCeEEEEEECCeEEEEEEEcCcccc-cccccCceeEEEEEEEec
Q 037553 24 TRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESK-KAMMYSNIGRLNCNVSYT 102 (151)
Q Consensus 24 ~~~~~~~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~adGSa~v~~G~T~Vl~~V~gp~~~~-~~~~~~~~g~l~v~v~~~ 102 (151)
..++++ +++++|+|||+++|+|++.+++|++++|||||+|++|+|+|+|+|+||.+.. +....+++|+|+|+|++.
T Consensus 10 ~~~~~~---l~~~~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~g~~e~~~~~~~~~~~g~l~v~~~~~ 86 (250)
T 2je6_B 10 ERPKLI---LDDGKRTDGRKPDELRSIKIELGVLKNADGSAIFEMGNTKAIAAVYGPKEMHPRHLSLPDRAVLRVRYHMT 86 (250)
T ss_dssp CCSCSB---CTTSCBTTSCCTTCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECSSGGGSCSSSCEEEEEEEEC
T ss_pred Ccccee---cCCCccCCCCCccCcCCeEEEeCCCCCCCeEEEEEECCcEEEEEEEcccccccccccCCCcEEEEEEEEeC
Confidence 344677 5899999999999999999999999999999999999999999999998743 355679999999999999
Q ss_pred CCcccccC---CCchHHHHHHHHHHHHHhhhccCCCCCcEEEEEEEEEecCC
Q 037553 103 TFATPIRG---QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151 (151)
Q Consensus 103 p~a~~~r~---~~~~~~~l~~~l~~~l~~~I~l~~~p~~~I~I~v~VL~~DG 151 (151)
|||+++++ +++++.+++++|+++|+++|+++.||+|.|+|+++||++||
T Consensus 87 p~a~~~~~~g~~~~~e~~~s~li~r~l~~~i~~~~~p~~~i~I~~~VL~~DG 138 (250)
T 2je6_B 87 PFSTDERKNPAPSRREIELSKVIREALESAVLVELFPRTAIDVFTEILQADA 138 (250)
T ss_dssp TTSSSSCCCSSCCHHHHHHHHHHHHHHHTTBCGGGSTTEEEEEEEEEEECSS
T ss_pred CCccCCccCCCCChhHHHHHHHHHHHHHhhcCHhhCCCcEEEEEEEEEeCCC
Confidence 99999653 77899999999999999999999999999999999999998
No 7
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.1e-31 Score=208.91 Aligned_cols=124 Identities=30% Similarity=0.431 Sum_probs=104.0
Q ss_pred CcCcccCCCCCCCCCCCCCCCCCcceEEEeCCcCCC-CeEEEEEECCeEEEEEEEcCccc-ccccccCceeEEEEEEEec
Q 037553 25 RPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSA-SGSAYAEFGNTKVIVSVFGPRES-KKAMMYSNIGRLNCNVSYT 102 (151)
Q Consensus 25 ~~~~~~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~a-dGSa~v~~G~T~Vl~~V~gp~~~-~~~~~~~~~g~l~v~v~~~ 102 (151)
+-+|+ +++++|+|||.++|+|++.+++|+++++ ||||+|++|+|+|+|+|+||.+. ++....+++|+|+|+|++.
T Consensus 3 ~~~~~---~~~~~R~DGR~~~e~R~i~i~~g~l~~aa~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~g~l~v~~~~~ 79 (246)
T 2wp8_B 3 RLEIY---SPEGLRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNIN 79 (246)
T ss_dssp CCCSS---CTTSCCTTSCCTTCCCCEEEEECSCTTTCSEEEEEEETTEEEEEEEEEEEC------CCSSSEEEEEEEEEC
T ss_pred chhhh---cccCccCCCCCcCCccCeEEEeCCCCCCCCceEEEEECCeEEEEEEEecCCcccccccCCCcEEEEEEEEeC
Confidence 34666 4899999999999999999999999999 99999999999999999999884 4345679999999999999
Q ss_pred CCcccccC-----CCchHHHHHHHHHHHHHhhhccCCCCCcEEEEEEEEEecCC
Q 037553 103 TFATPIRG-----QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151 (151)
Q Consensus 103 p~a~~~r~-----~~~~~~~l~~~l~~~l~~~I~l~~~p~~~I~I~v~VL~~DG 151 (151)
|||++++. +++++.+++++|+++|+++|+++.||+|.|+|+++||++||
T Consensus 80 p~a~~~~~~r~g~~~~~~~~~s~li~r~l~~~i~~~~~p~~~I~i~~~VL~~dG 133 (246)
T 2wp8_B 80 KFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLEQDG 133 (246)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHBCTTTSCSEEEEEEEEEEECCS
T ss_pred CcccccccccCCCCChhHHHHHHHHHHHHHHhhhHHHCCCeEEEEEEEEEECCC
Confidence 99998642 45789999999999999999999999999999999999998
No 8
>3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH., transferase; 1.70A {Bacillus anthracis}
Probab=99.97 E-value=1.9e-30 Score=205.82 Aligned_cols=121 Identities=23% Similarity=0.251 Sum_probs=108.5
Q ss_pred CCCCCCCCCCCCCCCCCcceEEEeCCcCCCCeEEEEEECCeEEEEEEEcCcccccccccCceeEEEEEEEecCCccccc-
Q 037553 31 GSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIR- 109 (151)
Q Consensus 31 ~~~~~~~R~DGR~~~e~R~i~i~~g~l~~adGSa~v~~G~T~Vl~~V~gp~~~~~~~~~~~~g~l~v~v~~~p~a~~~r- 109 (151)
|+-....|.|||+++|+|++++++|++++|||||+|++|+|+|+|+|++|...++....+++|+|+|+|++.||++.++
T Consensus 5 ~~~~~~~~~~~R~~~e~R~i~i~~g~~~~A~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~v~~~~~P~a~~~~~ 84 (255)
T 3dd6_A 5 HHHHHHMRVDGREKTELRHIHIHTNYLKHPEGSVLIEVGDTKVICSATIEERVPPFMRGEGKGWVTAEYAMIPRATEQRT 84 (255)
T ss_dssp ------CCCCSCCTTCCCCEEEEESCSSSSSEEEEEEETTEEEEEEEEEESCCCGGGTTSSCCEEEEEEEECTTSSSSCC
T ss_pred cccccccccCCCCcCCCCCEEEEECCCCCCCeEEEEEECCeEEEEEEEecCCCCCCCCCCCceEEEEEEEECCCcccccc
Confidence 3345679999999999999999999999999999999999999999999987655567799999999999999999973
Q ss_pred ------C-CCchHHHHHHHHHHHHHhhhccCCCCCcEEEEEEEEEecCC
Q 037553 110 ------G-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151 (151)
Q Consensus 110 ------~-~~~~~~~l~~~l~~~l~~~I~l~~~p~~~I~I~v~VL~~DG 151 (151)
| +++++.+++++|+++|+++|+++.||+|+|+|+++||++||
T Consensus 85 ~Re~~~g~~~~~~~eisrli~r~lr~~i~~~~l~~~~I~V~~~VL~~DG 133 (255)
T 3dd6_A 85 IRESSKGKVTGRTMEIQRLIGRALRAVVDLEALGERTVWIDCDVIQADG 133 (255)
T ss_dssp CCCCC-CCCCHHHHHHHHHHHHHHHHHBCHHHHCSCEEEEEEEEEECSS
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHhcChhhcCCeEEEEEEEEEECCC
Confidence 4 67789999999999999999999999999999999999998
No 9
>1udn_A Ribonuclease PH, RNAse PH; transferase, riken structural genomics/proteomics initiative structural genomics; 2.30A {Aquifex aeolicus} SCOP: d.14.1.4 d.101.1.1 PDB: 1udq_A 1uds_A 1udo_A
Probab=99.97 E-value=3.4e-30 Score=204.09 Aligned_cols=115 Identities=25% Similarity=0.315 Sum_probs=107.2
Q ss_pred CCCCCCCCCCCcceEEEeCCcCCCCeEEEEEECCeEEEEEEEcCcccccccccCceeEEEEEEEecCCccccc-------
Q 037553 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIR------- 109 (151)
Q Consensus 37 ~R~DGR~~~e~R~i~i~~g~l~~adGSa~v~~G~T~Vl~~V~gp~~~~~~~~~~~~g~l~v~v~~~p~a~~~r------- 109 (151)
+|+|||.++|+|++.+++|++++|||||+|++|+|+|+|+|++|...+.....+++|+|+|+|++.||++.+|
T Consensus 1 ~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~~~~~~~P~a~~~r~~Re~~~ 80 (255)
T 1udn_A 1 MRSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWITAEYSMLPRATQQRTIRESVQ 80 (255)
T ss_dssp -CTTSCCTTCCCCEEEEECCSSSSSEEEEEEETTEEEEEEEEEESCCCGGGTTSSCCEEEEEEEECSCCTTSCCCCSSTT
T ss_pred CCCCCCCCCCccCeEEEECCCCCCCEEEEEEECCEEEEEEEEcCCcCCCCCCCCCceEEEEEEEcCCCccccccccccCC
Confidence 4999999999999999999999999999999999999999999988765555689999999999999999875
Q ss_pred C-CCchHHHHHHHHHHHHHhhhccCCCCCcEEEEEEEEEecCC
Q 037553 110 G-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151 (151)
Q Consensus 110 ~-~~~~~~~l~~~l~~~l~~~I~l~~~p~~~I~I~v~VL~~DG 151 (151)
| +++++.+++++|+++|+++|+++.||+|.|+|+++||++||
T Consensus 81 G~~~~~~~eisrli~r~lr~~i~~~~l~~~~i~I~~~VL~~DG 123 (255)
T 1udn_A 81 GRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQADG 123 (255)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHBCGGGGCSCEEEEEEEEEECSS
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCHHHcCCeEEEEEEEEEeCCC
Confidence 3 57789999999999999999999999999999999999998
No 10
>1oys_A Ribonuclease PH; transferase, tRNA processing; 2.40A {Bacillus subtilis} SCOP: d.14.1.4 d.101.1.1 PDB: 1oyp_A 1oyr_A
Probab=99.97 E-value=1.2e-30 Score=205.40 Aligned_cols=115 Identities=23% Similarity=0.289 Sum_probs=94.4
Q ss_pred CCCCCCCCCCCcceEEEeCCcCCCCeEEEEEECCeEEEEEEEcCcccccccccCceeEEEEEEEecCCccccc-------
Q 037553 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIR------- 109 (151)
Q Consensus 37 ~R~DGR~~~e~R~i~i~~g~l~~adGSa~v~~G~T~Vl~~V~gp~~~~~~~~~~~~g~l~v~v~~~p~a~~~r------- 109 (151)
+|+|||.++|+|++++++|+++++||||+|++|+|+|+|+|++|...+++...+++|+|+|+|++.|||++++
T Consensus 1 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~~~~~~~p~a~~~~~~Re~~~ 80 (245)
T 1oys_A 1 MRHDGRQHDELRPITFDLDFISHPEGSVLITAGNTKVICNASVEDRVPPFLRGGGKGWITAEYSMLPQATNQQTIQESSK 80 (245)
T ss_dssp CCTTSCCTTCCCCEEEECC-----CCCEEEEETTEEEEEEEEEESCCCGGGTTSCCCEEEEEEEC---------------
T ss_pred CCCCCCCCCCcCCeEEEeCCCCCCCEEEEEEECCeEEEEEEEeccccCCccCCCCceEEEEEEEeCCCcCcccccccccC
Confidence 4999999999999999999999999999999999999999999998775556789999999999999999865
Q ss_pred C-CCchHHHHHHHHHHHHHhhhccCCCCCcEEEEEEEEEecCC
Q 037553 110 G-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151 (151)
Q Consensus 110 ~-~~~~~~~l~~~l~~~l~~~I~l~~~p~~~I~I~v~VL~~DG 151 (151)
| +++++++++++|+++|+++|++++||++.|+|+++||++||
T Consensus 81 G~~~~~~~eis~li~r~l~~~i~~~~l~~~~i~i~~~VL~~DG 123 (245)
T 1oys_A 81 GKISGRTMEIQRLIGRALRAVVDLEKLGERTIWIDCDVIQADG 123 (245)
T ss_dssp ----CHHHHHHHHHHHHHHHTBCHHHHCSCEEEEEEEEEECSS
T ss_pred CCCchHHHHHHHHHHHHHHHhcCHhHCCCEEEEEEEEEEeCCC
Confidence 3 67799999999999999999999999999999999999998
No 11
>3b4t_A Ribonuclease PH; RNAse, tRNA nucleotidyltransferase, RPHA, STRU genomics, TBSGC; 2.10A {Mycobacterium tuberculosis}
Probab=99.97 E-value=3.7e-30 Score=204.46 Aligned_cols=118 Identities=25% Similarity=0.330 Sum_probs=106.2
Q ss_pred CCCCCCCCCCCCCCcceEEEeCCcCCCCeEEEEEECCeEEEEEEEcCcccccccccCceeEEEEEEEecCCccccc----
Q 037553 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIR---- 109 (151)
Q Consensus 34 ~~~~R~DGR~~~e~R~i~i~~g~l~~adGSa~v~~G~T~Vl~~V~gp~~~~~~~~~~~~g~l~v~v~~~p~a~~~r---- 109 (151)
..++|+|||.++|+|++.+++|++++|||||+|++|+|+|+|+|++|...++....+++|+|+|+|++.|||++++
T Consensus 3 ~~g~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~v~~~~~p~a~~~~~~Re 82 (262)
T 3b4t_A 3 HVSKREDGRLDHELRPVIITRGFTENPAGSVLIEFGHTKVLCTASVTEGVPRWRKATGLGWLTAEYAMLPSATHSRSDRE 82 (262)
T ss_dssp --CCSTTSCCTTCCCCEEEEETSSSSSSEEEEEEETTEEEEEEEEEEESCC----CCSCCEEEEEEEECGGGSSSCCCCH
T ss_pred CCCcCCCCCCCcCcCCeEEEeCCcCCCCeEEEEEECCCEEEEEEEecCcCCCccCCCCceEEEEEEEeCCCccccccccc
Confidence 4678999999999999999999999999999999999999999999988665444588999999999999999865
Q ss_pred ---C-CCchHHHHHHHHHHHHHhhhccCCCCCcEEEEEEEEEecCC
Q 037553 110 ---G-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151 (151)
Q Consensus 110 ---~-~~~~~~~l~~~l~~~l~~~I~l~~~p~~~I~I~v~VL~~DG 151 (151)
| +++++.+++++|+++|+++|+++.||+|+|+|+++||++||
T Consensus 83 ~~~G~~~~~~~~isrli~r~lr~~i~~~~l~~~~I~i~~~VL~~DG 128 (262)
T 3b4t_A 83 SVRGRLSGRTQEISRLIGRSLRACIDLAALGENTIAIDCDVLQADG 128 (262)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHHTTBCHHHHCSEEEEEEEEEEECSS
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHhcCHhHCCCeEEEEEEEEEeCCC
Confidence 3 67889999999999999999999999999999999999998
No 12
>1r6l_A Ribonuclease PH; beta-alpha-beta-alpha fold, hexamer, phosphate bound, transf; HET: NHE; 1.90A {Pseudomonas aeruginosa} SCOP: d.14.1.4 d.101.1.1 PDB: 1r6m_A
Probab=99.97 E-value=9.7e-30 Score=199.39 Aligned_cols=115 Identities=26% Similarity=0.351 Sum_probs=104.9
Q ss_pred CCCCCCCCCCCcceEEEeCCcCCCCeEEEEEECCeEEEEEEEcCcccccccccCceeEEEEEEEecCCccccc-------
Q 037553 37 LRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIR------- 109 (151)
Q Consensus 37 ~R~DGR~~~e~R~i~i~~g~l~~adGSa~v~~G~T~Vl~~V~gp~~~~~~~~~~~~g~l~v~v~~~p~a~~~r------- 109 (151)
.|+|||+++|+|++.+++|++++|||||+|++|+|+|+|+|++|...+.....+++|+|+|+|++.|+++.++
T Consensus 2 ~R~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~p~~~~~~~~g~l~v~~~~~p~~~~~r~~Re~~~ 81 (239)
T 1r6l_A 2 NRPSGRAADQLRPIRITRHYTKHAEGSVLVEFGDTKVICTVSAESGVPRFLKGQGQGWLTAEYGMLPRSTGERNQREASR 81 (239)
T ss_dssp CCTTCCCTTCCCCEEEESSCSSSSSEEEEEEETTEEEEEEEEEEESCSSCCC---CCEEEEEEEECTTSSSSCCCCHHHH
T ss_pred cCCCCCCCCCcCCeEEEeCCcCCCCeEEEEEECCEEEEEEEEccCccCCccCCCCcEEEEEEEEeCCCccccccccccCC
Confidence 4999999999999999999999999999999999999999999988764444579999999999999999965
Q ss_pred C-CCchHHHHHHHHHHHHHhhhccCCCCCcEEEEEEEEEecCC
Q 037553 110 G-QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151 (151)
Q Consensus 110 ~-~~~~~~~l~~~l~~~l~~~I~l~~~p~~~I~I~v~VL~~DG 151 (151)
| +++++.+++++|+++|+++|+++.||++.|+|+++||++||
T Consensus 82 G~~~~~~~~isrli~r~l~~~i~~~~l~~~~i~I~~~VL~~DG 124 (239)
T 1r6l_A 82 GKQGGRTLEIQRLIGRSLRAALDLSKLGENTLYIDCDVIQADG 124 (239)
T ss_dssp TSCCHHHHHHHHHHHHHHHHTBCGGGTCSEEEEEEEEEEECSS
T ss_pred CCCcHHHHHHHHHHHHHHHHhcCHHHcCCeEEEEEEEEEeCCC
Confidence 4 67899999999999999999999999999999999999998
No 13
>2nn6_D Exosome complex exonuclease RRP46; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=99.96 E-value=6.2e-29 Score=194.87 Aligned_cols=117 Identities=19% Similarity=0.233 Sum_probs=87.6
Q ss_pred cCCCCCCCCCCCCCCC----CCcceEEEeCCcCCCCeEEEEEECCeEEEEEEEcCcccccccccCceeEEEEEEEecCCc
Q 037553 30 SGSDVDWLRPDSRGFH----QCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFA 105 (151)
Q Consensus 30 ~~~~~~~~R~DGR~~~----e~R~i~i~~g~l~~adGSa~v~~G~T~Vl~~V~gp~~~~~~~~~~~~g~l~v~v~~~p~a 105 (151)
.+.+.+++|+|||.++ |+|++++++|+++++||||+|++|+|+|+|+|+||.+.+++.+.+++|+|+++| .||+
T Consensus 9 ~~~~~~~~R~DGR~~~~~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~~~~~~~~~g~l~~~~--~p~~ 86 (237)
T 2nn6_D 9 TDAKIRAENGTGSSPRGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEIFNKATLEVIL--RPKI 86 (237)
T ss_dssp ------------------CCCCCCEEEEESCCSSSSEEEEEEETTEEEEEEEEEEEECC------CCEEEEEEE--ECSS
T ss_pred CCCCccCccCCCCCCCCccccccceEEEeCCCCCCCEEEEEEECCcEEEEEEeCCCcccccccCCCcEEEEEEe--cCCC
Confidence 3455788999999999 999999999999999999999999999999999999876666778999886654 5775
Q ss_pred ccccCCCchHHHHHHHHHHHHHhhhccCCCCCcEEEEEEEEEecCC
Q 037553 106 TPIRGQGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151 (151)
Q Consensus 106 ~~~r~~~~~~~~l~~~l~~~l~~~I~l~~~p~~~I~I~v~VL~~DG 151 (151)
.. ++.++++++++|+++|+++++++.||+|.|+|+++||++||
T Consensus 87 g~---~~~~e~~~~~li~r~l~~~i~~~~~p~~~I~I~~~VL~~dG 129 (237)
T 2nn6_D 87 GL---PGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAG 129 (237)
T ss_dssp SC---CCHHHHHHHHHHHHHHHHHCGGGCSSSEEEEEEEEEEECSS
T ss_pred CC---CCccHHHHHHHHHHHHHHHhchhcCCceEEEEEEEEEECCC
Confidence 32 67899999999999999999999999999999999999998
No 14
>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G
Probab=99.96 E-value=3.3e-29 Score=198.70 Aligned_cols=124 Identities=22% Similarity=0.267 Sum_probs=110.3
Q ss_pred CcccCCCCCCCCCCCCCCCCCcceEEEeCCcCCCCeEEEEEECCeEEEEEEEcCcccccccccCceeEEEEEEEecCCcc
Q 037553 27 PIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFAT 106 (151)
Q Consensus 27 ~~~~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~adGSa~v~~G~T~Vl~~V~gp~~~~~~~~~~~~g~l~v~v~~~p~a~ 106 (151)
+|+.+++++++|+|||+++|+|++.+++|++++|||||+|++|+|+|+|+|+++...+ ..+.+++|+|+|+|++.|||+
T Consensus 12 ~~i~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p-~~~~~~~g~l~v~~~~~p~a~ 90 (259)
T 3m7n_G 12 DYVLSKLRDNERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGEP-YPDTPDRGVIIVNAELVPLAS 90 (259)
T ss_dssp HHHHHHHHTTCCTTCCCTTCCCCEEEEETSSTTSSEEEEEEETTEEEEEEEEEEEECC-CSSCTTSCEEEEEEECCTTSC
T ss_pred HHHHHHHhcCCCCCCCCCccccCeEEEeCCcCCCCceEEEEECCcEEEEEEEecccCC-CCCCCCceEEEEEEEeCCccc
Confidence 3555566789999999999999999999999999999999999999999999765544 345689999999999999999
Q ss_pred ccc--C-CCchHHHHHHHHHHHHHh--hhccCCC---C-C--cEEEEEEEEEecCC
Q 037553 107 PIR--G-QGSDHKDFSSMLHKALEG--AIILETF---P-K--TTVDVFALVLESGG 151 (151)
Q Consensus 107 ~~r--~-~~~~~~~l~~~l~~~l~~--~I~l~~~---p-~--~~I~I~v~VL~~DG 151 (151)
+++ | +++++.+++++|+++|++ +|+++.| | + |.|+|+++||++||
T Consensus 91 ~~~~~g~~~~~~~~~srli~r~lr~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG 146 (259)
T 3m7n_G 91 PTFEPGPPDENSIELARVVDRGIRESEAVDLSKLVIEEGEKVWIVFVDIHALDDDG 146 (259)
T ss_dssp TTCCSSSSCHHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSS
T ss_pred ccccCCCCChHHHHHHHHHHHHHhhcCCccHHHhcccCCcEEEEEEEEEEEEcCCC
Confidence 863 3 778999999999999999 8999987 6 4 89999999999998
No 15
>2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A
Probab=99.96 E-value=7.3e-29 Score=198.16 Aligned_cols=132 Identities=21% Similarity=0.213 Sum_probs=115.3
Q ss_pred CCCCCCCcCcccCCCCCCCCCCCCCCCCCcceEEEeCCcCCCCeEEEEEECCeEEEEEEEcCcccccccccCceeEEEEE
Q 037553 19 DPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCN 98 (151)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~adGSa~v~~G~T~Vl~~V~gp~~~~~~~~~~~~g~l~v~ 98 (151)
.+.+....+|+.+.+++++|+|||.++|+|++.+++|++++|||||+|++|+|+|+|+|+++...+ ..+.+++|+|+|+
T Consensus 11 ~~~s~~~~~~i~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p-~~~~~~~g~l~v~ 89 (277)
T 2je6_A 11 NIIPIIKKESIVSLFEKGIRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLIVN 89 (277)
T ss_dssp SCCCHHHHHHHTTTGGGTBCTTSCBTTCCCCEEEEETCSTTSSEEEEEEETTEEEEEEEEEEEECC-CTTCTTCCEEEEE
T ss_pred ccccccHHHHHHHHHhcCCCCCCCCcCcccCeEEEeCCcCCCCeEEEEEECCeEEEEEEEeeeeCC-CCCCCCccEEEEE
Confidence 344455667777788999999999999999999999999999999999999999999999544333 3457899999999
Q ss_pred EEecCCccccc--C-CCchHHHHHHHHHHHHHh--hhccCCC------CCcEEEEEEEEEecCC
Q 037553 99 VSYTTFATPIR--G-QGSDHKDFSSMLHKALEG--AIILETF------PKTTVDVFALVLESGG 151 (151)
Q Consensus 99 v~~~p~a~~~r--~-~~~~~~~l~~~l~~~l~~--~I~l~~~------p~~~I~I~v~VL~~DG 151 (151)
|++.|||++++ | +++++.+++++|+++|++ +|+++.| +.|.|+|+++||++||
T Consensus 90 ~~~~p~a~~~~~~g~~~~~~~~is~li~r~lr~~~~i~~~~l~i~~g~~~~~i~i~~~VL~~DG 153 (277)
T 2je6_A 90 VELLPLAYETFEPGPPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGG 153 (277)
T ss_dssp EEECTTSCTTCCCSSCCHHHHHHHHHHHHHHHHTTCSCGGGGEEETTTEEEEEEEEEEEEECCS
T ss_pred EEeCCccCcccccCCCChHHHHHHHHHHHHHhccCCcCHHHceeecCceEEEEEEEEEEECCCC
Confidence 99999999874 3 778999999999999999 5889998 3579999999999998
No 16
>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=99.96 E-value=1.6e-29 Score=201.99 Aligned_cols=132 Identities=20% Similarity=0.229 Sum_probs=115.6
Q ss_pred CCCCCCCcCcccCCCCCCCCCCCCCCCCCcceEEEeCCcCCCCeEEEEEECCeEEEEEEEcCcccccccccCceeEEEEE
Q 037553 19 DPTRKTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCN 98 (151)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~adGSa~v~~G~T~Vl~~V~gp~~~~~~~~~~~~g~l~v~ 98 (151)
.+.+..+.+|+.+.+++++|+|||+++|+|++.+++|++++|||||+|++|+|+|+|+|++|...+. ...+++|+|+|+
T Consensus 6 ~~~~~~~~~~~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p~-~~~~~~g~l~v~ 84 (278)
T 2nn6_C 6 GFKTVEPLEYYRRFLKENCRPDGRELGEFRTTTVNIGSISTADGSALVKLGNTTVICGVKAEFAAPS-TDAPDKGYVVPN 84 (278)
T ss_dssp ---CCSTHHHHHHHHHTSCCTTSCCSCCCCSCCEEETCCSSSSEEEEEEETTEEEEEEEEEEECCCC-SSSTTCCCCEEE
T ss_pred hhhhhCHHHHHHHHHhcCCCCCCCCcccccCeEEEeCCccCCCceEEEEeCCeEEEEEEEEEeecCC-CCCCCccEEEEE
Confidence 4556777788887888999999999999999999999999999999999999999999999987543 456899999999
Q ss_pred EEecCCccccc--C-CCchHHHHHHHHHHHHHh--hhccCCC------CCcEEEEEEEEEecCC
Q 037553 99 VSYTTFATPIR--G-QGSDHKDFSSMLHKALEG--AIILETF------PKTTVDVFALVLESGG 151 (151)
Q Consensus 99 v~~~p~a~~~r--~-~~~~~~~l~~~l~~~l~~--~I~l~~~------p~~~I~I~v~VL~~DG 151 (151)
|++.|||++++ | +++++.+++++|+++|++ +|++++| +.|.|+|+++||++||
T Consensus 85 ~~~~p~a~~~~~~g~~~~~~~~~s~li~r~l~~s~~i~l~~L~i~pg~~~~~i~i~~~VL~~DG 148 (278)
T 2nn6_C 85 VDLPPLCSSRFRSGPPGEEAQVASQFIADVIENSQIIQKEDLCISPGKLVWVLYCDLICLDYDG 148 (278)
T ss_dssp EECCSSSCTTSCSSSCCHHHHHHHHHHHHHHHHHCCSCHHHHCSSBTTBCEEEEEEEEESSCCS
T ss_pred EEeCCccCccccCCCCcHHHHHHHHHHHHHHhccCCCCHHHCEEeCCcEEEEEEEEEEEECCCC
Confidence 99999999864 3 678999999999999995 7888865 3579999999999998
No 17
>3hkm_A OS03G0854200 protein; RNAse PH domain, phosphorylase, hydrolase; 1.98A {Oryza sativa japonica group}
Probab=99.96 E-value=3.9e-28 Score=191.68 Aligned_cols=112 Identities=25% Similarity=0.405 Sum_probs=97.1
Q ss_pred CCCCCCCCCCCCCcceEEEeCCcCCCCeEEEEEECCeEEEEEEEcCcccccccccCceeEEEEEEEecCCcccccCCCch
Q 037553 35 DWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQGSD 114 (151)
Q Consensus 35 ~~~R~DGR~~~e~R~i~i~~g~l~~adGSa~v~~G~T~Vl~~V~gp~~~~~~~~~~~~g~l~v~v~~~p~a~~~r~~~~~ 114 (151)
+++|+|||+++|+|++++++|+++++||||+|++|+|+|+|+|+||.+..+..+.++++.+ +|.++|+... ++.+
T Consensus 2 eg~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~g~~~~~~~~~~~~~~~~--~~~~~P~~g~---~~~~ 76 (246)
T 3hkm_A 2 EESRADGRNPNQLRPFSCTRNPLDRAHGSARWAQGDTIVLAAVYGPKPGTRKGENPEKASI--EVVWKPMTGQ---IGKQ 76 (246)
T ss_dssp ---CTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEECCCEECCCTTSCSSSCEE--EEEEECSSSC---CCTT
T ss_pred CCcCCCCCCCCCcCCeEEEECCCCCCCeEEEEEECCeEEEEEEecCcCCCcccCCCccEEE--EEEeCCCCCC---CChh
Confidence 5789999999999999999999999999999999999999999999865544566788776 5566774321 5778
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCcEEEEEEEEEecCC
Q 037553 115 HKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151 (151)
Q Consensus 115 ~~~l~~~l~~~l~~~I~l~~~p~~~I~I~v~VL~~DG 151 (151)
+++++++|+++|+++++++.||+|.|+|+++||++||
T Consensus 77 ~~e~~~li~r~l~~l~~~~~~~~~~I~v~~~VL~~dG 113 (246)
T 3hkm_A 77 EKEYEMTLKRTLQSICLLTVHPNTTTSVILQVVGNDG 113 (246)
T ss_dssp HHHHHHHHHHHHHHHBCTTSSCSEEEEEEEEEEECSS
T ss_pred HHHHHHHHHHHHHHhcCccCCCcEEEEEEEEEEecCC
Confidence 9999999999999999999999999999999999998
No 18
>2po1_B Probable exosome complex exonuclease 2; RNAse PH, hydrolase/hydrolase/RNA complex; 1.94A {Pyrococcus abyssi} PDB: 2po0_B* 2pnz_B 2po2_B*
Probab=99.95 E-value=2.4e-28 Score=195.33 Aligned_cols=126 Identities=25% Similarity=0.368 Sum_probs=110.7
Q ss_pred CCcCcccCCCCCCCCCCCCCCCCCcceEEEeCCcCCCCeEEEEEECCeEEEEEEE-cCcccccccccCceeEEEEEEEec
Q 037553 24 TRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVF-GPRESKKAMMYSNIGRLNCNVSYT 102 (151)
Q Consensus 24 ~~~~~~~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~adGSa~v~~G~T~Vl~~V~-gp~~~~~~~~~~~~g~l~v~v~~~ 102 (151)
...+|+.+.+++++|+|||+++|+|++++++|+++++||||+|++|+|+|+|+|+ +|.+ + ..+.+++|+|+|+|+++
T Consensus 13 ~~~~~i~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~-p-~~~~~~~g~l~~~~~~~ 90 (277)
T 2po1_B 13 IMRDHIINLLKEGKRIDDRGFEDYRPIEIEVGVIEKAEGSALVKLGSTQVLVGIKTSLGE-P-FPDTPNMGVMTTNVELV 90 (277)
T ss_dssp HHHHHHHHHHHTTCCTTSCCTTCCCCEEEEECCSTTSSEEEEEEETTEEEEEEEEEEEEC-C-CTTCTTSCEEEEEEEEC
T ss_pred cHHHHHHHHHhcCCCCCCCCCCCcCCeEEEeCCcCCCCeEEEEEECCeEEEEEEEecccC-C-CCCCCCceEEEEEEEeC
Confidence 3445555567899999999999999999999999999999999999999999999 6654 3 34678999999999999
Q ss_pred CCccccc--C-CCchHHHHHHHHHHHHHh--hhccCCC---CC---cEEEEEEEEEecCC
Q 037553 103 TFATPIR--G-QGSDHKDFSSMLHKALEG--AIILETF---PK---TTVDVFALVLESGG 151 (151)
Q Consensus 103 p~a~~~r--~-~~~~~~~l~~~l~~~l~~--~I~l~~~---p~---~~I~I~v~VL~~DG 151 (151)
|||++.+ | +++++.+++++|+++|++ +|++++| |+ |.|+|+++||++||
T Consensus 91 p~a~~~~~~g~~~~~~~~l~~li~r~l~~s~~idl~~L~i~pg~~~w~i~id~~VL~~dG 150 (277)
T 2po1_B 91 PLASPTFEPGPPDERAIELARVIDRGIRESKALNLEKMVIVPGKIVRVVFIDVHVLDHDG 150 (277)
T ss_dssp GGGCTTCCSSSCCHHHHHHHHHHHHHHHTTTSBCGGGGEEETTTEEEEEEEEEEEEECSS
T ss_pred CCccccccCCCCChHHHHHHHHHHHHHhhcccccHHHccccCCcEEEEEEEEEEEECCCC
Confidence 9999853 4 778999999999999998 7999987 43 59999999999998
No 19
>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.95 E-value=2e-28 Score=195.02 Aligned_cols=127 Identities=21% Similarity=0.265 Sum_probs=111.4
Q ss_pred CCCcCcccCCCCCCCCCCCCCCCCCcceEEEeCCcCCCCeEEEEEECCeEEEEEEE-cCcccccccccCceeEEEEEEEe
Q 037553 23 KTRPPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVF-GPRESKKAMMYSNIGRLNCNVSY 101 (151)
Q Consensus 23 ~~~~~~~~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~adGSa~v~~G~T~Vl~~V~-gp~~~~~~~~~~~~g~l~v~v~~ 101 (151)
...-+|+.+.+++++|+|||+++|+|++.+++|++++|||||+|++|+|+|+|+|+ +|.+. ..+.+++|+|+|+|++
T Consensus 10 ~~~~~~~~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~~~~~p--~~~~~~~g~l~v~~~~ 87 (271)
T 2wnr_A 10 EITRKSITDLINNKERIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEP--FPDTPEMGVILTNSEL 87 (271)
T ss_dssp CHHHHHHHHHHHTTCCTTCCCTTCCCCEEEEESCSTTSSEEEEEEETTEEEEEEEEEEEECC--CTTCTTCCEEEEEEEE
T ss_pred ccHHHHHHHHHhcCCCCCCCCcccccCeEEEeCccCCCCeEEEEEECCeEEEEEEEeeeecC--CCCCCCceEEEEEEEe
Confidence 44445666677899999999999999999999999999999999999999999999 55443 3457899999999999
Q ss_pred cCCccccc--C-CCchHHHHHHHHHHHHHh--hhccCCC---C---CcEEEEEEEEEecCC
Q 037553 102 TTFATPIR--G-QGSDHKDFSSMLHKALEG--AIILETF---P---KTTVDVFALVLESGG 151 (151)
Q Consensus 102 ~p~a~~~r--~-~~~~~~~l~~~l~~~l~~--~I~l~~~---p---~~~I~I~v~VL~~DG 151 (151)
.|||++++ | +++++.+++++|+++|++ +|+++.| | .|.|+|+++||++||
T Consensus 88 ~p~a~~~~~~g~~~~~~~~~s~li~r~lr~s~~i~l~~l~i~pg~~~~~i~i~~~VL~~DG 148 (271)
T 2wnr_A 88 LPMASPTFEPGPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLFLDLHIIDYDG 148 (271)
T ss_dssp CGGGCTTCCCSSCCHHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSS
T ss_pred CCcccccccCCCCchHHHHHHHHHHHHHhccCCccHHHccccCCcEEEEEEEEEEEECCCC
Confidence 99999864 3 778999999999999999 6888888 4 369999999999998
No 20
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=99.94 E-value=3.6e-27 Score=203.38 Aligned_cols=118 Identities=20% Similarity=0.286 Sum_probs=99.7
Q ss_pred CCCCCCCCCCCCCCCcceEEEeCCcCCCCeEEEEEECCeEEEEEE-EcCccccc---ccccCceeEEEEEEEecCCcccc
Q 037553 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV-FGPRESKK---AMMYSNIGRLNCNVSYTTFATPI 108 (151)
Q Consensus 33 ~~~~~R~DGR~~~e~R~i~i~~g~l~~adGSa~v~~G~T~Vl~~V-~gp~~~~~---~~~~~~~g~l~v~v~~~p~a~~~ 108 (151)
++++.|+|||.++|+|+|+|++|+++++||||+|++|+|+|+|+| .||.+... +...+++|++++||+++|||+++
T Consensus 310 l~~g~R~DGR~~~elRpi~i~~g~l~~a~GSal~~~G~T~Vl~~Vt~gp~~~~~~~~~l~~~~~g~~~~~y~~~P~st~e 389 (549)
T 3gme_A 310 LAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGE 389 (549)
T ss_dssp HHTCCCTTSCCTTCCCCEEEEECCCSSSSEEEEEEETTEEEEEEEEEEC---------------CCEEEEEECCGGGTTC
T ss_pred hcCCCCCCCCCCCCccceEEEECCCCCCCceEEEEECCeEEEEEEEecCcccccCccccCCCCceEEEEEEEeCCCCcCC
Confidence 468999999999999999999999999999999999999999999 69976432 23346889999999999999997
Q ss_pred cC----CCchHHHHHHHHHHHHHhhhc-cCCCCCcEEEEEEEEEecCC
Q 037553 109 RG----QGSDHKDFSSMLHKALEGAII-LETFPKTTVDVFALVLESGG 151 (151)
Q Consensus 109 r~----~~~~~~~l~~~l~~~l~~~I~-l~~~p~~~I~I~v~VL~~DG 151 (151)
++ ++.++.+++++|+++|+++|+ .++||++ |+|+++||++||
T Consensus 390 ~~~~g~~~~Reie~~~li~raL~~vI~~~~~~P~t-I~V~~~VLesDG 436 (549)
T 3gme_A 390 TGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVSEITESNG 436 (549)
T ss_dssp CCCSSCCCSSHHHHHHHHHHHHTTTCCCTTTCCCE-EEEEEEEEECSS
T ss_pred cccCCCCChhHHHHHHHHHHHHHHhcCccccCCeE-EEEEEEEEECCC
Confidence 53 677999999999999999999 6788975 999999999998
No 21
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.94 E-value=8.6e-27 Score=206.25 Aligned_cols=118 Identities=22% Similarity=0.310 Sum_probs=106.9
Q ss_pred CCCCCCCCCCCCCCCcceEEEeCCcCCCCeEEEEEECCeEEEEEE-EcCcccccc---cccCceeEEEEEEEecCCcccc
Q 037553 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV-FGPRESKKA---MMYSNIGRLNCNVSYTTFATPI 108 (151)
Q Consensus 33 ~~~~~R~DGR~~~e~R~i~i~~g~l~~adGSa~v~~G~T~Vl~~V-~gp~~~~~~---~~~~~~g~l~v~v~~~p~a~~~ 108 (151)
++++.|+|||.++|+|+|+|++|+++++||||+|++|+|+|||+| .||.+..+. ...+++|+++++|+|+|||+.+
T Consensus 326 l~~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TkVl~~Vt~Gp~~~~~~~d~l~~~~~g~~~~~y~~~P~st~e 405 (726)
T 4aid_A 326 LDTGLRIDGRDVKTVRPILGEVGILPRTHGSALFTRGETQAIVVATLGTGDDEQFIDALEGTYKESFLLHYNFPPYSVGE 405 (726)
T ss_dssp HSSSBCTTSCBTTCCCCEEEEECSSTTSSEEEEEEETTEEEEEEEEEECGGGSEEEEETTEEEEECEEEEEECCGGGGTC
T ss_pred hcCCCCCCCCCCCCccceEEEECCCCCCCceEEEEeCCeEEEEEEEeCCCCcccccccccCCCceEEEEEEEeCCCcccc
Confidence 378999999999999999999999999999999999999999999 799875432 2346899999999999999997
Q ss_pred cC----CCchHHHHHHHHHHHHHhhhc-cCCCCCcEEEEEEEEEecCC
Q 037553 109 RG----QGSDHKDFSSMLHKALEGAII-LETFPKTTVDVFALVLESGG 151 (151)
Q Consensus 109 r~----~~~~~~~l~~~l~~~l~~~I~-l~~~p~~~I~I~v~VL~~DG 151 (151)
++ ++.++.+++++|+++|+++|+ .++||++ |+|+++||++||
T Consensus 406 r~~~g~~~~Reie~~~li~raL~~vI~~~~~~P~t-I~V~~~VLesDG 452 (726)
T 4aid_A 406 TGRMGSPGRREIGHGKLAWRALRPMLPTKEDFPYT-IRLVSEITESNG 452 (726)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHGGGSCCTTTCCCE-EEEEEEEEECSS
T ss_pred cccCCCcchhhHHHHHHHHHHHHHhcCccccCCeE-EEEEEEEEEcCC
Confidence 53 677999999999999999999 6889986 999999999998
No 22
>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=99.94 E-value=2.2e-27 Score=192.23 Aligned_cols=125 Identities=26% Similarity=0.287 Sum_probs=109.9
Q ss_pred cCcccCCCCCCCCCCCCCCCCCcceEEEeCCcCCCCeEEEEEECCeEEEEEEEcCcccccccccCceeEEEEEEEecCCc
Q 037553 26 PPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFA 105 (151)
Q Consensus 26 ~~~~~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~adGSa~v~~G~T~Vl~~V~gp~~~~~~~~~~~~g~l~v~v~~~p~a 105 (151)
-+|+.+.+++++|+|||+++|+|++.+++|++++|+|||+|++|+|+|+|+|+++...+ ..+.+++|+|.++|++.|+|
T Consensus 25 ~~~i~~~l~~~~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~V~~e~~~p-~~~~~~~g~l~~~v~~~p~a 103 (305)
T 2nn6_E 25 KVYIVHGVQEDLRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTP-KLEKPNEGYLEFFVDCSASA 103 (305)
T ss_dssp HHHHHHHHHTTCCSSSCCSSCCCCCEEEECCCTTSSSEEEEEETTEEEEEECCCCCSCC-CSSSCSSCCEEEECCCCTTT
T ss_pred HHHHHHHHhcCCCCCCCCCcCccCeEEEeCcccCCCcEEEEEECCeEEEEEEEEEeeCC-CcCCCCceEEEEEEEeCCCc
Confidence 34555567889999999999999999999999999999999999999999999987654 45678999999999999999
Q ss_pred ccccC---CCchHHHHHHHHHHHHHh--hhccC---CCCC---cEEEEEEEEEecCC
Q 037553 106 TPIRG---QGSDHKDFSSMLHKALEG--AIILE---TFPK---TTVDVFALVLESGG 151 (151)
Q Consensus 106 ~~~r~---~~~~~~~l~~~l~~~l~~--~I~l~---~~p~---~~I~I~v~VL~~DG 151 (151)
++.+. +++++.+++++|+++|++ +|+++ .+|+ |.|+|+++||++||
T Consensus 104 ~~~~~~r~~~~~~~~isrli~r~lr~s~~idl~~L~i~p~~~~w~i~idv~VL~~DG 160 (305)
T 2nn6_E 104 TPEFEGRGGDDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVLYVDVLLLECGG 160 (305)
T ss_dssp CSSCCTTSTHHHHHHHHHHHHHHHHHSCCSCSSSSCSSTTTCCCCEEEEEEECCCCS
T ss_pred CccccCCCCchHHHHHHHHHHHHHhhcCcccHHHheeccCcEEEEEEEEEEEECCCC
Confidence 88642 446899999999999999 88888 4564 56999999999998
No 23
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.94 E-value=2.7e-26 Score=204.21 Aligned_cols=117 Identities=19% Similarity=0.241 Sum_probs=106.2
Q ss_pred CCCCCCCCCCCCCCcceEEEeCCcCCCCeEEEEEECCeEEEEEE-EcCcccccc---cccCceeEEEEEEEecCCccccc
Q 037553 34 VDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV-FGPRESKKA---MMYSNIGRLNCNVSYTTFATPIR 109 (151)
Q Consensus 34 ~~~~R~DGR~~~e~R~i~i~~g~l~~adGSa~v~~G~T~Vl~~V-~gp~~~~~~---~~~~~~g~l~v~v~~~p~a~~~r 109 (151)
++++|+|||.++|+|+|+|++|+++++||||+|++|+|+|||+| .||.+..+. ...+++|+++++|+|+|||++++
T Consensus 352 ~~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TqVL~~Vt~Gp~~~~~~~d~l~~~~~g~~~~~y~f~P~st~e~ 431 (757)
T 1e3p_A 352 AEKKRIDGRGVTDIRTLAAEVEAIPRVHGSALFERGETQILGVTTLNMLRMEQQLDTLSPVTRKRYMHNYNFPPYSVGET 431 (757)
T ss_dssp HTCBCTTSCBTTCCCCEEEEECCSSSSSEEEEEEETTEEEEEEEEEEEGGGSEECCSSSSCCEESEEEEEECCGGGGTCC
T ss_pred cCCCCCCCCCcccccceeEEeCCCCCCCEEEEEEECCcEEEEEEEecCCCccccccccCCCCceEEEEEEEeCCcccccc
Confidence 58999999999999999999999999999999999999999999 599875432 23578899999999999999976
Q ss_pred C----CCchHHHHHHHHHHHHHhhhc-cCCCCCcEEEEEEEEEecCC
Q 037553 110 G----QGSDHKDFSSMLHKALEGAII-LETFPKTTVDVFALVLESGG 151 (151)
Q Consensus 110 ~----~~~~~~~l~~~l~~~l~~~I~-l~~~p~~~I~I~v~VL~~DG 151 (151)
+ ++.++.+++++|+++|+++|+ +++||++ |+|+++||++||
T Consensus 432 ~~~g~~~~reie~~~li~raL~~vI~~~~~~P~t-I~V~~~VLesDG 477 (757)
T 1e3p_A 432 GRVGSPKRREIGHGALAERAIVPVLPTREEFPYA-IRQVSEALGSNG 477 (757)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHGGGCCCTTTSCEE-EEEEEEEEECSS
T ss_pred cCCCCCchhHHHHHHHHHHHHHHhccccccCCEE-EEEEEEEEECCC
Confidence 3 677999999999999999998 7889976 999999999998
No 24
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=99.93 E-value=3.4e-26 Score=200.30 Aligned_cols=117 Identities=23% Similarity=0.222 Sum_probs=103.6
Q ss_pred CCCCCCCCCCCCCCCcceEEEeCCcCCCCeEEEEEECCeEEEEEEEcCcccccc--------cccCceeEEEEEEEecCC
Q 037553 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKA--------MMYSNIGRLNCNVSYTTF 104 (151)
Q Consensus 33 ~~~~~R~DGR~~~e~R~i~i~~g~l~~adGSa~v~~G~T~Vl~~V~gp~~~~~~--------~~~~~~g~l~v~v~~~p~ 104 (151)
+++++|+|||+++|+|+|+|++|+++++||||+|++|+|+|||+|++|...+.. ...+++|++.++|++.||
T Consensus 314 l~~g~R~DGR~~~elRpi~i~~g~l~~a~GSal~~~G~T~Vl~~Vt~~~~~~~~~~d~~~~~l~~~~~g~~~~~y~~~P~ 393 (630)
T 3u1k_A 314 LNEYKRCDGRDLTSLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAINGIKDKNFMLHYEFPPY 393 (630)
T ss_dssp HHHSCCTTSCCTTCCCCEEEEECCSTTSSEEEEEEETTEEEEEEEEEECGGGGSCSSHHHHHHHCCCGGGEEEEEECCGG
T ss_pred hcCCCCCCCCCCccccceEEEECCCCCCCceEEEEECCeEEEEEEEcCCCCchhcccccccccCCCCceEEEEEEEecCC
Confidence 368999999999999999999999999999999999999999999986543321 124688999999999999
Q ss_pred cccccC----CCchHHHHHHHHHHHHHhhhccCCCCCcEEEEEEEEEecCC
Q 037553 105 ATPIRG----QGSDHKDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151 (151)
Q Consensus 105 a~~~r~----~~~~~~~l~~~l~~~l~~~I~l~~~p~~~I~I~v~VL~~DG 151 (151)
|+++++ ++.++.+++++++++|+++|+ +.||++ |+|+++||++||
T Consensus 394 st~e~~~~g~~~rREi~~~~Li~raLr~vi~-~~~p~t-I~V~~~VLesDG 442 (630)
T 3u1k_A 394 ATNEIGKVTGLNRRELGHGALAEKALYPVIP-RDFPFT-IRVTSEVLESNG 442 (630)
T ss_dssp GGTCCCCCSSCCHHHHHHHHHHHHHHGGGSC-TTCSSE-EEEEEEEEECSS
T ss_pred cccccccCCCCChHHHHHHHHHHHHHHhhCc-ccCCeE-EEEEEEEEEcCC
Confidence 999763 577999999999999999997 678975 999999999998
No 25
>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=99.93 E-value=1.3e-26 Score=191.66 Aligned_cols=121 Identities=21% Similarity=0.222 Sum_probs=105.9
Q ss_pred CcccCCCCCCCCCCCCCCCCCcceEEEeCCcCCCCeEEEEEECCeEEEEEEEcCcccccccccCceeEEEEEEEecCCcc
Q 037553 27 PIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFAT 106 (151)
Q Consensus 27 ~~~~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~adGSa~v~~G~T~Vl~~V~gp~~~~~~~~~~~~g~l~v~v~~~p~a~ 106 (151)
+|+.+.+++++|+|||.++|+|++.|++| +++|||+|++|+|+|+|+|++|...+. ...+++|+|.++|++.|+++
T Consensus 29 ~~i~~~L~~g~R~DGR~~~e~R~i~ie~g---~A~GSa~v~~G~T~VL~tV~~e~~~p~-~~~~~~g~l~~~v~~~p~a~ 104 (358)
T 2nn6_A 29 RFLLRAIEEKKRLDGRQTYDYRNIRISFG---TDYGCCIVELGKTRVLGQVSCELVSPK-LNRATEGILFFNLELSQMAA 104 (358)
T ss_dssp HHHHHHHHTTCCTTSCCTTCCCCCEEEEC---SSTTEEEEESSSCEEEEEECCEEECCC-STTTTSCCEEEEEEECTTTC
T ss_pred HHHHHHHhcCCCCCCCCccccCCeEEEEe---cCCcEEEEEECCcEEEEEEEecccCCc-ccCCCCcEEEEEEEecCCcc
Confidence 34444678999999999999999999999 899999999999999999999987653 45689999999999999999
Q ss_pred ccc--C-CCchHHHHHHHHHHHHHhh--hccCCC------CCcEEEEEEEEEecCC
Q 037553 107 PIR--G-QGSDHKDFSSMLHKALEGA--IILETF------PKTTVDVFALVLESGG 151 (151)
Q Consensus 107 ~~r--~-~~~~~~~l~~~l~~~l~~~--I~l~~~------p~~~I~I~v~VL~~DG 151 (151)
+++ | +++++.+++++|+++|+++ ++++.+ ++|.|+|+++||++||
T Consensus 105 ~~~~~g~~s~~e~eisrli~r~Lr~s~~idl~~LcI~pg~~~w~I~Vdv~VL~~DG 160 (358)
T 2nn6_A 105 PAFEPGRQSDLLVKLNRLMERCLRNSKCIDTESLCVVAGEKVWQIRVDLHLLNHDG 160 (358)
T ss_dssp SSCCSSSTHHHHTHHHHHHHHHHHHHTCBCSSSSCSBTTTBEEEEEEEEEECSCCS
T ss_pred ccccCCCCCHHHHHHHHHHHHHhhhccccchHhhcccCCCccEEEEEEEEEEeCCC
Confidence 874 3 6678999999999999994 555544 6689999999999998
No 26
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=2e-26 Score=186.46 Aligned_cols=122 Identities=20% Similarity=0.175 Sum_probs=92.0
Q ss_pred cCcccCCCCCCCCCCCCCCCCCcceEEEeCCcCCCCeEEEEEECCeEEEEEEEcCcccccccccCceeEEEEEEEecCCc
Q 037553 26 PPIFSGSDVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFA 105 (151)
Q Consensus 26 ~~~~~~~~~~~~R~DGR~~~e~R~i~i~~g~l~~adGSa~v~~G~T~Vl~~V~gp~~~~~~~~~~~~g~l~v~v~~~p~a 105 (151)
-+|+.+.+++++|+|||.++|+|++.|++| +++|||+|++|+|+|+|+|++|...+. .+.+++|.+.|+|+++||+
T Consensus 12 ~~~i~~~l~~~~R~DGR~~~e~R~i~i~~g---~a~GSa~v~~G~T~Vl~~V~~~~~~p~-~~~~~~g~~~~~ve~~~~~ 87 (305)
T 2wp8_A 12 SKFILEALRQNYRLDGRSFDQFRDVEITFG---KEFGDVSVKMGNTKVHCRISCQIAQPY-EDRPFEGLFVISTEISPMA 87 (305)
T ss_dssp HHHHHHHHTTTCCTTSCCTTCCCCEEEEEC---SSTTEEEEEETTEEEEEEEEEEEC-CC-SSCTTCCEEEEEECCC---
T ss_pred HHHHHHHHhhCCCCCCCCCcccCCeEEEEc---CCCcEEEEEECCeEEEEEEeccccCCc-ccCCCCcEEEEEEEECCCC
Confidence 356666678999999999999999999999 899999999999999999999987553 4568999999999999999
Q ss_pred cccc--C-CC-chHHHHHHHHHHHHH--hhhccCCC---CC---cEEEEEEEEEecCC
Q 037553 106 TPIR--G-QG-SDHKDFSSMLHKALE--GAIILETF---PK---TTVDVFALVLESGG 151 (151)
Q Consensus 106 ~~~r--~-~~-~~~~~l~~~l~~~l~--~~I~l~~~---p~---~~I~I~v~VL~~DG 151 (151)
.+.. | ++ +++.+++++|+++|+ .+|+++.| |. |.|+|+++||++||
T Consensus 88 ~~~~~~g~~~~~~~~~is~li~r~l~~s~~idl~~L~i~pg~~~w~I~id~~VL~~DG 145 (305)
T 2wp8_A 88 GSQFENGNITGEDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVRADVHFLDCDG 145 (305)
T ss_dssp -------------------CHHHHHHHTTSBCGGGGEEETTTEEEEEEEEEEEEECSS
T ss_pred CccccCCCCChhHHHHHHHHHHHHHhhccCcCHHHccccCCcEEEEEEEEEEEEcCCC
Confidence 8853 4 56 789999999999999 58999877 43 67999999999998
No 27
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.92 E-value=2.9e-25 Score=196.86 Aligned_cols=118 Identities=20% Similarity=0.267 Sum_probs=98.7
Q ss_pred CCCCCCCCCCCCCCCcceEEEeCCcCCCCeEEEEEECCeEEEEEE-EcCccccc---ccccCceeEEEEEEEecCCcccc
Q 037553 33 DVDWLRPDSRGFHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSV-FGPRESKK---AMMYSNIGRLNCNVSYTTFATPI 108 (151)
Q Consensus 33 ~~~~~R~DGR~~~e~R~i~i~~g~l~~adGSa~v~~G~T~Vl~~V-~gp~~~~~---~~~~~~~g~l~v~v~~~p~a~~~ 108 (151)
+++++|+|||.++|+|+|+|++|+++++||||+|++|+|+|||+| .||.+..+ +...+++|++.++|+++|||+++
T Consensus 316 ~~~g~R~DGR~~~elRpI~ie~gvl~~a~GSAl~~~G~TqVL~~Vt~gp~e~~~~~d~l~~~~~g~~~~~y~~~P~st~e 395 (723)
T 3cdi_A 316 LAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGE 395 (723)
T ss_dssp HTTCCCTTSCCTTCCCCEEEEESCSTTSSEEEEEEETTEEEEEEEEECC-------------CTTSEEEEEECCGGGGTC
T ss_pred hccCcCCCCCCccccccceEEeCCCCCCCeEEEEEECCcEEEEEEEecCcccccCCcccCCCCceEEEEEEecCCCCccc
Confidence 368999999999999999999999999999999999999999999 69976432 22346889999999999999998
Q ss_pred cC----CCchHHHHHHHHHHHHHhhhcc-CCCCCcEEEEEEEEEecCC
Q 037553 109 RG----QGSDHKDFSSMLHKALEGAIIL-ETFPKTTVDVFALVLESGG 151 (151)
Q Consensus 109 r~----~~~~~~~l~~~l~~~l~~~I~l-~~~p~~~I~I~v~VL~~DG 151 (151)
++ ++.++.+++.+|+++|+++|++ ++||++ |+|+++||++||
T Consensus 396 ~~r~g~p~~REi~~~~li~raL~~vI~~~~~~p~t-I~Vd~~VLesdG 442 (723)
T 3cdi_A 396 TGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYT-VRVVSEITESNG 442 (723)
T ss_dssp CCCC-----CTTHHHHHHHHHHHTTSCCSSSSCSC-EEEEEEEEECSS
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHhcCcccCCCEE-EEEEEEEEeCCC
Confidence 74 4678999999999999999996 678875 999999999998
No 28
>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain, homodimer, exosome, cell-death-related DNAS hydrolase; 3.92A {Caenorhabditis elegans}
Probab=99.86 E-value=2.7e-24 Score=167.14 Aligned_cols=101 Identities=25% Similarity=0.314 Sum_probs=67.4
Q ss_pred CCCCcceEEEeCCcCCCCeEEEEEECCeEEEEEEEcCcccccccccCceeEEEEEEEecCCcccccCCCchHHHHHHHHH
Q 037553 44 FHQCRPAFFRTGAVNSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPIRGQGSDHKDFSSMLH 123 (151)
Q Consensus 44 ~~e~R~i~i~~g~l~~adGSa~v~~G~T~Vl~~V~gp~~~~~~~~~~~~g~l~v~v~~~p~a~~~r~~~~~~~~l~~~l~ 123 (151)
++|+|++++++|++++|||||+|++|+|+|+|+|+||.+.++..+.+++++| +|++.|+++. ++.+ +++++|+
T Consensus 2 ~~e~R~i~ie~g~l~~A~GSa~v~~G~T~Vl~~V~~~~e~~~~~~~~~~~~l--~v~~~p~~G~---~~~~--e~~~li~ 74 (222)
T 3krn_A 2 AGRLREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTL--DISYRANCGD---NKFN--VLNNIIH 74 (222)
T ss_dssp -CCCCCBCCBSCCC----CCCBCCBTTCEEECCCCSSCC---------------CCCSSCCCC-----CCS--SCTTHHH
T ss_pred CCcccceEEEECCCCCCCeEEEEEECCcEEEEEEECCCCCcccccCCceEEE--EEEEcCCCCC---CCHH--HHHHHHH
Confidence 5799999999999999999999999999999999999987655566788887 5566787643 2223 9999999
Q ss_pred HHHHhhhccCCCCCcEEEEEEEEEecCC
Q 037553 124 KALEGAIILETFPKTTVDVFALVLESGG 151 (151)
Q Consensus 124 ~~l~~~I~l~~~p~~~I~I~v~VL~~DG 151 (151)
++|+++|++++||++.|+|+++||++||
T Consensus 75 r~l~~~i~~~~~p~~~I~I~~~VL~~DG 102 (222)
T 3krn_A 75 STLSNAINLELFPHTTISVTVHGIQDDG 102 (222)
T ss_dssp HC--CCSCC-----CCCCCCCEEEECCS
T ss_pred HHHHHhccHHhCCCcEEEEEEEEEECCC
Confidence 9999999999999999999999999998
No 29
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=99.68 E-value=2.7e-16 Score=137.82 Aligned_cols=99 Identities=19% Similarity=0.207 Sum_probs=85.4
Q ss_pred CcceEEEeCCcCC-CCeEEEEEECCeEEEEEEEcCcccccccccCceeEEEEEEEecCCcccc-------c-C-CCchHH
Q 037553 47 CRPAFFRTGAVNS-ASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPI-------R-G-QGSDHK 116 (151)
Q Consensus 47 ~R~i~i~~g~l~~-adGSa~v~~G~T~Vl~~V~gp~~~~~~~~~~~~g~l~v~v~~~p~a~~~-------r-~-~~~~~~ 116 (151)
-|++.+++|.+.+ |||||+|++|+|+|||+|+||.+.++. +...|+|+|+..+|+.+. | + +++++.
T Consensus 14 ~R~i~ietG~~a~qA~GSa~v~~G~T~VL~tv~~~~~~~~~----df~pL~v~y~~~~~a~g~iPg~f~kRegrps~~e~ 89 (630)
T 3u1k_A 14 NRKLEISSGKLARFADGSAVVQSGDTAVMVTAVSKTKPSPS----QFMPLVVDYRQKAAAAGRIPTNYLRREVGTSDKEI 89 (630)
T ss_dssp SSEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCSS----SSCCEEEEEECSEETTTTEECTTC-----CCHHHH
T ss_pred CEEEEEEeCCccccCCeeEEEEECCeEEEEEEEecCCCCCC----CeeEEEEEEEecccccCCCCccccccCCCCCHHHH
Confidence 5899999999986 999999999999999999999876532 556699999999998741 2 2 778899
Q ss_pred HHHHHHHHHHHhhhccCCCCCcEEEEEEEEEecCC
Q 037553 117 DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151 (151)
Q Consensus 117 ~l~~~l~~~l~~~I~l~~~p~~~I~I~v~VL~~DG 151 (151)
+++++|.+.|++++++..+|+.+ |+++||++||
T Consensus 90 lisRlIdR~lRp~~~~~~~~~~q--I~~~VLs~Dg 122 (630)
T 3u1k_A 90 LTSRIIDRSIRPLFPAGYFYDTQ--VLCNLLAVDG 122 (630)
T ss_dssp HHHHHHHHHHGGGSCTTCCCCEE--EEEEEEECCS
T ss_pred HHHHHHhHHhhhcccccCCCceE--EEEEEEECCC
Confidence 99999999999999988888755 7999999997
No 30
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex, cytoplasm, nucleotidyltransferase, RNA- binding, transferase, hydrolase; 2.40A {Escherichia coli E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Probab=99.44 E-value=9.8e-13 Score=113.58 Aligned_cols=100 Identities=19% Similarity=0.269 Sum_probs=78.4
Q ss_pred CcceEEEeCCcC-CCCeEEEEEECCeEEEEEEEcCcccccccccCceeEEEEEEEecCCccc-------cc-C-CCchHH
Q 037553 47 CRPAFFRTGAVN-SASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATP-------IR-G-QGSDHK 116 (151)
Q Consensus 47 ~R~i~i~~g~l~-~adGSa~v~~G~T~Vl~~V~gp~~~~~~~~~~~~g~l~v~v~~~p~a~~-------~r-~-~~~~~~ 116 (151)
-|++.+++|.+. +|+||+++++|+|+|||+|.++.+.+.. .+.-.|+|+|.-..|+.+ .| | +++++.
T Consensus 13 ~R~i~ietg~~ak~A~GSvlv~~GdT~Vl~tv~~~~~~~~g---~df~Pltv~Y~e~~~a~G~iPg~~~~REGrps~~~~ 89 (549)
T 3gme_A 13 QHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPG---QDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGET 89 (549)
T ss_dssp TEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCTT---CCSCCEEEEEEECGGGTTCCCSCC-----CCCHHHH
T ss_pred CEEEEEEECCccCCCCeEEEEEECCEEEEEEEEecCCCCCC---CCCccceeeeeeehhhcccCCCcCcCcCCCCChhhh
Confidence 489999999886 5999999999999999999999764321 122238889875555543 22 3 788999
Q ss_pred HHHHHHHHHHHhhhccCCCCCcEEEEEEEEEecCC
Q 037553 117 DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151 (151)
Q Consensus 117 ~l~~~l~~~l~~~I~l~~~p~~~I~I~v~VL~~DG 151 (151)
+++++|.|.|+++++...+. .++|+++||+.||
T Consensus 90 l~~RlIdR~lRplfp~~~~~--evqI~~~Vls~D~ 122 (549)
T 3gme_A 90 LIARLIDRPIRPLFPEGFVN--EVQVIATVVSVNP 122 (549)
T ss_dssp HHHHHHHHHHGGGSCTTCCS--CEEEEEEEEECCS
T ss_pred HHHHHhCCccccccccCCcc--cEEEEEEEEecCC
Confidence 99999999999988766544 5888999999997
No 31
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.43 E-value=1.3e-12 Score=115.88 Aligned_cols=100 Identities=21% Similarity=0.282 Sum_probs=80.5
Q ss_pred CcceEEEeCCcC-CCCeEEEEEECCeEEEEEEEcCcccccccccCceeEEEEEEEecCCccc-------cc-C-CCchHH
Q 037553 47 CRPAFFRTGAVN-SASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATP-------IR-G-QGSDHK 116 (151)
Q Consensus 47 ~R~i~i~~g~l~-~adGSa~v~~G~T~Vl~~V~gp~~~~~~~~~~~~g~l~v~v~~~p~a~~-------~r-~-~~~~~~ 116 (151)
-|++.+++|.+. +|+||+++++|+|+|||+|.++...+.. .+...|+|+|.-..||.+ .| | +++++.
T Consensus 27 ~R~i~ietg~~ak~A~GSvlv~~GdT~VL~tv~~~~~~~~g---~df~pltveY~ek~~a~G~iPg~~~~REGrps~~~~ 103 (726)
T 4aid_A 27 GKTLVLETGRIARQADGAVLATMGETVVLATAVFAKSQKPG---QDFFPLTVNYQEKTFAAGKIPGGFFKREGRPSEKET 103 (726)
T ss_dssp TEEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCTT---CCSCCEEEEEEECGGGGTCCCCSTTCSCCSCCHHHH
T ss_pred CeeEEEEECCccCCCCeeEEEEECCeEEEEEEEecCCCCCC---CCCcCceeeeeeehhhcccCCCcccCCCCCCCchhh
Confidence 589999999876 5999999999999999999999865432 234458999975444433 23 3 788999
Q ss_pred HHHHHHHHHHHhhhccCCCCCcEEEEEEEEEecCC
Q 037553 117 DFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151 (151)
Q Consensus 117 ~l~~~l~~~l~~~I~l~~~p~~~I~I~v~VL~~DG 151 (151)
+++++|.|.|+++++...+ ..++|+++||+.||
T Consensus 104 li~RlIdR~lRplf~~~~~--~evqI~~~Vls~Dg 136 (726)
T 4aid_A 104 LVSRLIDRPIRPLFVKGFK--NEVQVVVTVLQHDL 136 (726)
T ss_dssp HHHHHHHHHHGGGBCTTCC--SCEEEEEEEEECCS
T ss_pred hHHHHhCCccccccccCCc--cceEEEEEEEecCC
Confidence 9999999999999886654 46889999999997
No 32
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.40 E-value=2.2e-12 Score=115.03 Aligned_cols=100 Identities=21% Similarity=0.284 Sum_probs=80.4
Q ss_pred CcceEEEeCCc-CCCCeEEEEEE-CCeEEEEEEEcCcccccccccCceeEEEEEEEecCCccc-------cc-C-CCchH
Q 037553 47 CRPAFFRTGAV-NSASGSAYAEF-GNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATP-------IR-G-QGSDH 115 (151)
Q Consensus 47 ~R~i~i~~g~l-~~adGSa~v~~-G~T~Vl~~V~gp~~~~~~~~~~~~g~l~v~v~~~p~a~~-------~r-~-~~~~~ 115 (151)
-|++.+++|.+ .+|+||+++++ |+|+|||+|.+|.+.++. .+.-.|+|+|+-..||.+ +| | +++++
T Consensus 36 ~r~i~~etg~la~qA~GSv~v~~~G~T~Vl~tv~~~~~~~~~---~df~pLtv~y~ek~~a~g~iPg~f~~REGrps~~e 112 (757)
T 1e3p_A 36 TRTIRFETGRLARQAAGSAVAYLDDDTMVLSATTASKNPKDQ---LDFFPLTVDVEERMYAAGKIPGSFFRREGRPSEDA 112 (757)
T ss_dssp EEEEEEEESSSCTTSSEEEEEEETTTEEEEEEEEEEEEECTT---CSSCCEEEEEEECGGGGTCCCCSTTSSCCSCCHHH
T ss_pred CEeEEEEECccccCCCeEEEEEECCCeEEEEEEEecCCCCCC---CCCccEEEEEEecccccccCCCcccccCcCCChHH
Confidence 37999999987 58999999999 999999999999875331 233449999976655544 23 3 78899
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcEEEEEEEEEecCC
Q 037553 116 KDFSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151 (151)
Q Consensus 116 ~~l~~~l~~~l~~~I~l~~~p~~~I~I~v~VL~~DG 151 (151)
.+++++|.|.|+++++... +..|+|+++||++||
T Consensus 113 ~l~~RlIdR~LRplfp~~~--~~evqv~~~Vls~D~ 146 (757)
T 1e3p_A 113 ILTCRLIDRPLRPSFKKGL--RNEIQVVATIMALNP 146 (757)
T ss_dssp HHHHHHHHHHHGGGBCTTB--CEEEEEEEEEEECCT
T ss_pred HHHHHHHCCcchhccccCC--CCceEEEEEEEEECC
Confidence 9999999999999765433 346999999999997
No 33
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.39 E-value=2.9e-12 Score=113.83 Aligned_cols=99 Identities=19% Similarity=0.280 Sum_probs=78.2
Q ss_pred cceEEEeCCc-CCCCeEEEEEECCeEEEEEEEcCcccccccccCceeEEEEEEEecCCcccc-------c-C-CCchHHH
Q 037553 48 RPAFFRTGAV-NSASGSAYAEFGNTKVIVSVFGPRESKKAMMYSNIGRLNCNVSYTTFATPI-------R-G-QGSDHKD 117 (151)
Q Consensus 48 R~i~i~~g~l-~~adGSa~v~~G~T~Vl~~V~gp~~~~~~~~~~~~g~l~v~v~~~p~a~~~-------r-~-~~~~~~~ 117 (151)
|++.+++|.+ .+||||++|++|+|+|||+|+++.+.++. .+.-.|+|+|.-..+|.+. | | +++++.+
T Consensus 20 r~i~ietg~ia~qA~GSv~v~~G~T~Vl~tv~~~~~~~~~---~~f~pltv~y~ek~~a~g~ipg~f~kReGrpse~e~l 96 (723)
T 3cdi_A 20 HTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPG---QDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETL 96 (723)
T ss_dssp EEEEEEESSSCTTSSEEEEEEETTEEEEEEEEECSSCCSS---CCSCCEEEEEEECGGGGTCCCC-------CCCHHHHH
T ss_pred EEEEEEeCccccCCCeeEEEEECCEEEEEEEEecCCCCCC---CCeeeEEEEEeEeccccccCCCccccCCCCCChHHhH
Confidence 4899999988 58999999999999999999999654221 2334477888755555442 2 3 7889999
Q ss_pred HHHHHHHHHHhhhccCCCCCcEEEEEEEEEecCC
Q 037553 118 FSSMLHKALEGAIILETFPKTTVDVFALVLESGG 151 (151)
Q Consensus 118 l~~~l~~~l~~~I~l~~~p~~~I~I~v~VL~~DG 151 (151)
++++|.|.|+++++... ++.++|+++||+.||
T Consensus 97 ~sRlIdR~lRplfp~~~--~~~vqv~~~vls~Dg 128 (723)
T 3cdi_A 97 IARLIDRPIRPLFPEGF--VNEVQVIATVVSVNP 128 (723)
T ss_dssp HHHHHHHHHGGGSCTTC--CSCEEEEEEEEECCT
T ss_pred HHHHhCccchhcccccC--cceEEEEEEEEEcCC
Confidence 99999999999876443 467999999999997
No 34
>1whu_A Polynucleotide phosphorylase; 3'-5' RNA exonuclease; pnpase, alpha-helical domain, structural genomics; NMR {Mus musculus} SCOP: a.4.9.1
Probab=92.05 E-value=0.07 Score=35.87 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=17.6
Q ss_pred CCCcCcccCCCCCCCCCCCCCCCCCc
Q 037553 23 KTRPPIFSGSDVDWLRPDSRGFHQCR 48 (151)
Q Consensus 23 ~~~~~~~~~~~~~~~R~DGR~~~e~R 48 (151)
+.|..++ .++.|+|||.++++|
T Consensus 82 ~vR~~IL----~e~~RiDGR~~deIr 103 (104)
T 1whu_A 82 VFRSIIL----NEYKRCDGRDSGPSS 103 (104)
T ss_dssp HHHHHHT----TSSCSCCCCCSSCSC
T ss_pred HHHHHHH----CCCcCCCCCCccccc
Confidence 3444555 789999999999998
Done!