BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037554
(173 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZLP|A Chain A, Petal Death Protein Psr132 With Cysteine-Linked
Glutaraldehyde Forming A Thiohemiacetal Adduct
pdb|1ZLP|B Chain B, Petal Death Protein Psr132 With Cysteine-Linked
Glutaraldehyde Forming A Thiohemiacetal Adduct
Length = 318
Score = 211 bits (536), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 106/198 (53%), Positives = 132/198 (66%), Gaps = 39/198 (19%)
Query: 7 LNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFV 66
LNVQR +++L++AGA G FLEDQ WPKKCGHM GK ++PAEEHA KIA+AR+AIGDSDF
Sbjct: 116 LNVQRFIRELISAGAKGVFLEDQVWPKKCGHMRGKAVVPAEEHALKIAAAREAIGDSDFF 175
Query: 67 L------------------------ARADASFVEAPRNDNE-------------ANWVWG 89
L A ADA+FVEAP N +E AN + G
Sbjct: 176 LVARTDARAPHGLEEGIRRANLYKEAGADATFVEAPANVDELKEVSAKTKGLRIANMIEG 235
Query: 90 --HTLHTPEELKAMGFHLTVHPLTALYASARALVDVLKTLKESGTTRDHLEKMGTFEEFN 147
LHTPEE K MGFHL H LTA+YA+ARALV+++K LKE GTTRD L++M TF EFN
Sbjct: 236 GKTPLHTPEEFKEMGFHLIAHSLTAVYATARALVNIMKILKEKGTTRDDLDQMATFSEFN 295
Query: 148 QLVNLESWFEIEGRYSNF 165
+L++LESW+E+E ++ NF
Sbjct: 296 ELISLESWYEMESKFKNF 313
>pdb|4IQD|A Chain A, Crystal Structure Of Carboxyvinyl-carboxyphosphonate
Phosphorylmutase From Bacillus Anthracis
pdb|4IQD|B Chain B, Crystal Structure Of Carboxyvinyl-carboxyphosphonate
Phosphorylmutase From Bacillus Anthracis
pdb|4IQE|A Chain A, Crystal Structure Of Carboxyvinyl-carboxyphosphonate
Phosphorylmutase From Bacillus Anthracis Str. Ames
Ancestor
pdb|4IQE|B Chain B, Crystal Structure Of Carboxyvinyl-carboxyphosphonate
Phosphorylmutase From Bacillus Anthracis Str. Ames
Ancestor
Length = 305
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 95/197 (48%), Gaps = 39/197 (19%)
Query: 1 TGGGNALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60
TG G LNV RT + V A A +EDQ PKKCGH++GK+++ EE KI + ++ +
Sbjct: 98 TGFGGVLNVARTAVEXVEAKVAAVQIEDQQLPKKCGHLNGKKLVTTEELVQKIKAIKE-V 156
Query: 61 GDSDFVLAR-----------------------ADASFVEAPRNDNE-------------A 84
S +++AR ADA F EA +++ E A
Sbjct: 157 APSLYIVARTDARGVEGLDEAIERANAYVKAGADAIFPEALQSEEEFRLFNSKVNAPLLA 216
Query: 85 NWV-WGHT-LHTPEELKAMGFHLTVHPLTALYASARALVDVLKTLKESGTTRDHLEKMGT 142
N +G T ++ EE GF ++P+T+L +A+A +V +KE+G+ +D L T
Sbjct: 217 NXTEFGKTPYYSAEEFANXGFQXVIYPVTSLRVAAKAYENVFTLIKETGSQKDALSNXQT 276
Query: 143 FEEFNQLVNLESWFEIE 159
E + ++ + E++
Sbjct: 277 RSELYETISYHDFEELD 293
>pdb|1MUM|A Chain A, Structure Of The 2-Methylisocitrate Lyase (Prpb) From
Escherichia Coli
pdb|1MUM|B Chain B, Structure Of The 2-Methylisocitrate Lyase (Prpb) From
Escherichia Coli
pdb|1OQF|A Chain A, Crystal Structure Of The 2-Methylisocitrate Lyase
pdb|1OQF|B Chain B, Crystal Structure Of The 2-Methylisocitrate Lyase
Length = 295
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 95/202 (47%), Gaps = 42/202 (20%)
Query: 3 GGNALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGD 62
G +A NV RTVK ++ AGAAG +EDQ K+CGH K I+ EE +I +A DA D
Sbjct: 90 GSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRCGHRPNKAIVSKEEMVDRIRAAVDAKTD 149
Query: 63 SDFV-LARADA--------------SFVEA------PRNDNE----------------AN 85
DFV +AR DA ++VEA P E AN
Sbjct: 150 PDFVIMARTDALAVEGLDAAIERAQAYVEAGAEMLFPEAITELAMYRQFADAVQVPILAN 209
Query: 86 WV-WGHT-LHTPEELKAMGFHLTVHPLTALYASARALVDVLKTLKESGTTRDHLEKMGTF 143
+G T L T +EL++ + ++PL+A A RA V L++ GT + ++ M T
Sbjct: 210 ITEFGATPLFTTDELRSAHVAMALYPLSAFRAMNRAAEHVYNVLRQEGTQKSVIDTMQTR 269
Query: 144 EEFNQLVNLESWFEIEGRYSNF 165
E + +N +++ E + N
Sbjct: 270 NELYESIN---YYQYEEKLDNL 288
>pdb|1XG3|A Chain A, Crystal Structure Of The C123s 2-Methylisocitrate Lyase
Mutant From Escherichia Coli In Complex With The
Reaction Product, Mg(Ii)-Pyruvate And Succinate
pdb|1XG3|B Chain B, Crystal Structure Of The C123s 2-Methylisocitrate Lyase
Mutant From Escherichia Coli In Complex With The
Reaction Product, Mg(Ii)-Pyruvate And Succinate
pdb|1XG3|C Chain C, Crystal Structure Of The C123s 2-Methylisocitrate Lyase
Mutant From Escherichia Coli In Complex With The
Reaction Product, Mg(Ii)-Pyruvate And Succinate
pdb|1XG3|D Chain D, Crystal Structure Of The C123s 2-Methylisocitrate Lyase
Mutant From Escherichia Coli In Complex With The
Reaction Product, Mg(Ii)-Pyruvate And Succinate
pdb|1XG4|A Chain A, Crystal Structure Of The C123s 2-Methylisocitrate Lyase
Mutant From Escherichia Coli In Complex With The
Inhibitor Isocitrate
pdb|1XG4|B Chain B, Crystal Structure Of The C123s 2-Methylisocitrate Lyase
Mutant From Escherichia Coli In Complex With The
Inhibitor Isocitrate
pdb|1XG4|C Chain C, Crystal Structure Of The C123s 2-Methylisocitrate Lyase
Mutant From Escherichia Coli In Complex With The
Inhibitor Isocitrate
pdb|1XG4|D Chain D, Crystal Structure Of The C123s 2-Methylisocitrate Lyase
Mutant From Escherichia Coli In Complex With The
Inhibitor Isocitrate
Length = 295
Score = 79.7 bits (195), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 94/202 (46%), Gaps = 42/202 (20%)
Query: 3 GGNALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGD 62
G +A NV RTVK ++ AGAAG +EDQ K+ GH K I+ EE +I +A DA D
Sbjct: 90 GSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTD 149
Query: 63 SDFV-LARADA--------------SFVEA------PRNDNE----------------AN 85
DFV +AR DA ++VEA P E AN
Sbjct: 150 PDFVIMARTDALAVEGLDAAIERAQAYVEAGAEMLFPEAITELAMYRQFADAVQVPILAN 209
Query: 86 WV-WGHT-LHTPEELKAMGFHLTVHPLTALYASARALVDVLKTLKESGTTRDHLEKMGTF 143
+G T L T +EL++ + ++PL+A A RA V L++ GT + ++ M T
Sbjct: 210 ITEFGATPLFTTDELRSAHVAMALYPLSAFRAMNRAAEHVYNVLRQEGTQKSVIDTMQTR 269
Query: 144 EEFNQLVNLESWFEIEGRYSNF 165
E + +N +++ E + N
Sbjct: 270 NELYESIN---YYQYEEKLDNL 288
>pdb|1UJQ|A Chain A, Crystal Structure Of 2-Methylisocitrate Lyase (Prpb) From
Salmonella Enterica Serovar Typhimurium
pdb|1UJQ|B Chain B, Crystal Structure Of 2-Methylisocitrate Lyase (Prpb) From
Salmonella Enterica Serovar Typhimurium
pdb|1UJQ|C Chain C, Crystal Structure Of 2-Methylisocitrate Lyase (Prpb) From
Salmonella Enterica Serovar Typhimurium
pdb|1UJQ|D Chain D, Crystal Structure Of 2-Methylisocitrate Lyase (Prpb) From
Salmonella Enterica Serovar Typhimurium
pdb|1O5Q|A Chain A, Crystal Structure Of Pyruvate And Mg2+ Bound 2-
Methylisocitrate Lyase (Prpb) From Salmonella
Typhimurium
pdb|1O5Q|B Chain B, Crystal Structure Of Pyruvate And Mg2+ Bound 2-
Methylisocitrate Lyase (Prpb) From Salmonella
Typhimurium
pdb|1O5Q|C Chain C, Crystal Structure Of Pyruvate And Mg2+ Bound 2-
Methylisocitrate Lyase (Prpb) From Salmonella
Typhimurium
pdb|1O5Q|D Chain D, Crystal Structure Of Pyruvate And Mg2+ Bound 2-
Methylisocitrate Lyase (Prpb) From Salmonella
Typhimurium
Length = 305
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 95/208 (45%), Gaps = 41/208 (19%)
Query: 3 GGNALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGD 62
G +A NV RTVK + AGAA +EDQ K+CGH K I+ EE +I +A DA D
Sbjct: 93 GSSAFNVARTVKSIAKAGAAALHIEDQVGAKRCGHRPNKAIVSKEEMVDRIRAAVDARTD 152
Query: 63 SDFV-LARADASFVEA--------------------PRNDNEANWV-------------- 87
+FV +AR DA VE P E +
Sbjct: 153 PNFVIMARTDALAVEGLEAALDRAQAYVDAGADMLFPEAITELSMYRRFADVAQVPILAN 212
Query: 88 ---WGHT-LHTPEELKAMGFHLTVHPLTALYASARALVDVLKTLKESGTTRDHLEKMGTF 143
+G T L T +EL++ + ++PL+A A RA V L++ GT ++ ++ M T
Sbjct: 213 ITEFGATPLFTTDELRSAHVAMALYPLSAFRAMNRAAEKVYTVLRQEGTQKNVIDIMQTR 272
Query: 144 EEFNQLVNLESWFE-IEGRYSNFKKAVE 170
E + +N + E ++ Y N KK++E
Sbjct: 273 NELYESINYYQFEEKLDALYRN-KKSLE 299
>pdb|3EOO|A Chain A, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|B Chain B, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|C Chain C, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|D Chain D, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|E Chain E, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|F Chain F, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|G Chain G, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|H Chain H, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|I Chain I, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|J Chain J, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|K Chain K, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|L Chain L, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|M Chain M, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|N Chain N, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|O Chain O, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
pdb|3EOO|P Chain P, 2.9a Crystal Structure Of Methyl-Isocitrate Lyase From
Burkholderia Pseudomallei
Length = 298
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 78/181 (43%), Gaps = 39/181 (21%)
Query: 1 TGGGNALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60
TG G A N+ RT++ + AG LEDQ K+CGH GK+ +PA E +I +A DA
Sbjct: 92 TGWGGAFNIARTIRSFIKAGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDAR 151
Query: 61 GDSDFVL------------------------ARADASFVEAPRNDNE------------- 83
D FV+ A AD F EA + ++
Sbjct: 152 TDETFVIMARTDAAAAEGIDAAIERAIAYVEAGADMIFPEAMKTLDDYRRFKEAVKVPIL 211
Query: 84 ANWV-WGHT-LHTPEELKAMGFHLTVHPLTALYASARALVDVLKTLKESGTTRDHLEKMG 141
AN +G T L T +ELK + ++ A A +A ++ +T++ GT + + M
Sbjct: 212 ANLTEFGSTPLFTLDELKGANVDIALYCCGAYRAMNKAALNFYETVRRDGTQKAAVPTMQ 271
Query: 142 T 142
T
Sbjct: 272 T 272
>pdb|3LYE|A Chain A, Crystal Structure Of Oxaloacetate Acetylhydrolase
pdb|3M0J|A Chain A, Structure Of Oxaloacetate Acetylhydrolase In Complex With
The Inhibitor 3,3-Difluorooxalacetate
pdb|3M0K|A Chain A, Structure Of Oxaloacetate Acetylhydrolase In Complex With
The Product Oxalate
Length = 307
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 88/203 (43%), Gaps = 48/203 (23%)
Query: 1 TGGGNALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKI--ASARD 58
TG G + V RTV+ + +G AG LEDQ K+CGH+ GK+++ +E+ +I A A
Sbjct: 97 TGYGGPIMVARTVEHYIRSGVAGAHLEDQILTKRCGHLSGKKVVSRDEYLVRIRAAVATK 156
Query: 59 AIGDSDFVL-AR-----------------------ADASFVEAPRNDNEAN--------W 86
SDFVL AR AD +E R+ +A W
Sbjct: 157 RRLRSDFVLIARTDALQSLGYEECIERLRAARDEGADVGLLEGFRSKEQAAAAVAALAPW 216
Query: 87 VW-------GHT-LHTPEELKAMGFHLTVHPLTALYASARALVDVLKTLKESGT--TRDH 136
GH+ L T EE KAMGF + + L + A+ + L L++ G T D
Sbjct: 217 PLLLNSVENGHSPLITVEEAKAMGFRIMIFSFATLAPAYAAIRETLVRLRDHGVVGTPDG 276
Query: 137 LEKMGTFEEFNQLVNLESWFEIE 159
+ + FE + L+ E++
Sbjct: 277 ITPVRLFE----VCGLQDAMEVD 295
>pdb|3I4E|A Chain A, Crystal Structure Of Isocitrate Lyase From Burkholderia
Pseudomallei
pdb|3I4E|B Chain B, Crystal Structure Of Isocitrate Lyase From Burkholderia
Pseudomallei
pdb|3I4E|C Chain C, Crystal Structure Of Isocitrate Lyase From Burkholderia
Pseudomallei
pdb|3I4E|D Chain D, Crystal Structure Of Isocitrate Lyase From Burkholderia
Pseudomallei
Length = 439
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 7/95 (7%)
Query: 2 GGGNALNVQRTVKDLVAAGAAGCFLEDQ-SWPKKCGHMHGKQIIPAEEHAAKIASAR--- 57
G G LN +K ++ AGA+G EDQ + KKCGHM GK ++P E AK+ +AR
Sbjct: 162 GFGGVLNAFELMKAMIEAGASGVHFEDQLASVKKCGHMGGKVLVPTREAVAKLTAARLAA 221
Query: 58 DAIGDSDFVLARAD---ASFVEAPRNDNEANWVWG 89
D +G ++AR D A + + +DN+ ++ G
Sbjct: 222 DVMGTPTVLVARTDAEAADLITSDIDDNDKPYLTG 256
>pdb|1F61|A Chain A, Crystal Structure Of Isocitrate Lyase From Mycobacterium
Tuberculosis
pdb|1F61|B Chain B, Crystal Structure Of Isocitrate Lyase From Mycobacterium
Tuberculosis
pdb|1F8M|A Chain A, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|B Chain B, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|C Chain C, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|D Chain D, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
Length = 429
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 2 GGGNALNVQRTVKDLVAAGAAGCFLEDQ-SWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60
G G ALNV K L+AAG AG EDQ + KKCGH+ GK +IP ++H + SAR A
Sbjct: 158 GFGGALNVYELQKALIAAGVAGSHWEDQLASEKKCGHLGGKVLIPTQQHIRTLTSARLAA 217
Query: 61 GDSD---FVLARADA 72
+D V+AR DA
Sbjct: 218 DVADVPTVVIARTDA 232
>pdb|3FA3|A Chain A, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|B Chain B, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|C Chain C, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|D Chain D, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|E Chain E, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|F Chain F, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|G Chain G, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|H Chain H, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|I Chain I, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|J Chain J, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|K Chain K, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|L Chain L, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|M Chain M, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|N Chain N, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|O Chain O, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA3|P Chain P, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Trigonal
Crystal Form
pdb|3FA4|A Chain A, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
pdb|3FA4|B Chain B, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
pdb|3FA4|C Chain C, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
pdb|3FA4|D Chain D, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
pdb|3FA4|E Chain E, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
pdb|3FA4|F Chain F, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
pdb|3FA4|G Chain G, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
pdb|3FA4|H Chain H, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
pdb|3FA4|I Chain I, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
pdb|3FA4|J Chain J, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
pdb|3FA4|K Chain K, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
pdb|3FA4|L Chain L, Crystal Structure Of 2,3-Dimethylmalate Lyase, A Pep
MutaseISOCITRATE Lyase Superfamily Member, Triclinic
Crystal Form
Length = 302
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 82/203 (40%), Gaps = 44/203 (21%)
Query: 1 TGGGNALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKI---ASAR 57
TG G + V RT + +G A +EDQ K+CGH+ GK ++ + + +I AR
Sbjct: 89 TGYGGPIMVARTTEQYSRSGVAAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIRAAVQAR 148
Query: 58 DAIGDSDFVLAR-----------------------ADASFVEAPRNDNEANWV------W 88
IG V+AR AD F+E + A V W
Sbjct: 149 QRIGSDIVVIARTDSLQTHGYEESVARLRAARDAGADVGFLEGITSREMARQVIQDLAGW 208
Query: 89 GHTLH------TPE----ELKAMGFHLTVHPLTALYASARALVDVLKTLKESGTTRDHLE 138
L+ TP E K MGF + + P AL + A+ + ++ LK G L+
Sbjct: 209 PLLLNMVEHGATPSISAAEAKEMGFRIIIFPFAALGPAVAAMREAMEKLKRDGIP--GLD 266
Query: 139 KMGTFEEFNQLVNLESWFEIEGR 161
K T + ++ L+ +++ +
Sbjct: 267 KEMTPQMLFRVCGLDESMKVDAQ 289
>pdb|1F8I|A Chain A, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|B Chain B, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|C Chain C, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|D Chain D, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
Length = 429
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 2 GGGNALNVQRTVKDLVAAGAAGCFLEDQ-SWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60
G G ALNV K L+AAG AG EDQ + KK GH+ GK +IP ++H + SAR A
Sbjct: 158 GFGGALNVYELQKALIAAGVAGSHWEDQLASEKKSGHLGGKVLIPTQQHIRTLTSARLAA 217
Query: 61 GDSD---FVLARADA 72
+D V+AR DA
Sbjct: 218 DVADVPTVVIARTDA 232
>pdb|1IGW|A Chain A, Crystal Structure Of The Isocitrate Lyase From The A219c
Mutant Of Escherichia Coli
pdb|1IGW|B Chain B, Crystal Structure Of The Isocitrate Lyase From The A219c
Mutant Of Escherichia Coli
pdb|1IGW|C Chain C, Crystal Structure Of The Isocitrate Lyase From The A219c
Mutant Of Escherichia Coli
pdb|1IGW|D Chain D, Crystal Structure Of The Isocitrate Lyase From The A219c
Mutant Of Escherichia Coli
Length = 434
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 2 GGGNALNVQRTVKDLVAAGAAGCFLEDQ-SWPKKCGHMHGKQIIPAEEHAAKIASAR--- 57
G G LN +K ++ AGAA EDQ + KKCGHM GK ++P +E K+ +AR
Sbjct: 161 GFGGVLNAFELMKAMIEAGAAAVHFEDQLASVKKCGHMGGKVLVPTQEAIQKLVAARLCA 220
Query: 58 DAIGDSDFVLARADA 72
D G ++AR DA
Sbjct: 221 DVTGVPTLLVARTDA 235
>pdb|1DQU|A Chain A, Crystal Structure Of The Isocitrate Lyase From Aspergillus
Nidulans
Length = 538
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Query: 1 TGGGNALNVQRTVKDLVAAGAAGCFLEDQSWP--KKCGHMHGKQIIPAEEHAAKIASAR- 57
TG G V + K V GAAG +EDQ+ P KKCGHM GK ++P EH ++ + R
Sbjct: 171 TGHGGLTAVMKLTKLFVERGAAGIHIEDQA-PGTKKCGHMAGKVLVPISEHINRLVAIRA 229
Query: 58 --DAIGDSDFVLARADA 72
D +G +AR D+
Sbjct: 230 QADIMGTDLLAIARTDS 246
>pdb|3EOL|A Chain A, 2.0a Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis (P43212)
pdb|3EOL|B Chain B, 2.0a Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis (P43212)
Length = 433
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 2 GGGNALNVQRTVKDLVAAGAAGCFLEDQ-SWPKKCGHMHGKQIIPAEEHAAKIASAR--- 57
G G+ L+ +K + AGAAG EDQ + KKCGH+ GK +IP H + +AR
Sbjct: 155 GFGDPLDAFEIMKAYIEAGAAGVHFEDQLASEKKCGHLGGKVLIPTAAHIRNLNAARLAA 214
Query: 58 DAIGDSDFVLARADA 72
D +G ++AR DA
Sbjct: 215 DVMGTPTLIVARTDA 229
>pdb|3LG3|A Chain A, 1.4a Crystal Structure Of Isocitrate Lyase From Yersinia
Pestis Co92
pdb|3LG3|B Chain B, 1.4a Crystal Structure Of Isocitrate Lyase From Yersinia
Pestis Co92
Length = 435
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 2 GGGNALNVQRTVKDLVAAGAAGCFLEDQ-SWPKKCGHMHGKQIIPAEEHAAKIASAR--- 57
G G LN K + AGAAG EDQ + KKCGH GK ++P +E K+ +AR
Sbjct: 162 GFGGVLNAFELXKAXIEAGAAGVHFEDQLAAVKKCGHXGGKVLVPTQEAIQKLVAARLAA 221
Query: 58 DAIGDSDFVLARADA 72
D +G ++AR DA
Sbjct: 222 DVLGVPTLLIARTDA 236
>pdb|3E5B|A Chain A, 2.4 A Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis
pdb|3E5B|B Chain B, 2.4 A Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis
pdb|3E5B|C Chain C, 2.4 A Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis
pdb|3E5B|D Chain D, 2.4 A Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis
pdb|3OQ8|A Chain A, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To The Product Mimic Malonate
pdb|3OQ8|B Chain B, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To The Product Mimic Malonate
pdb|3OQ8|C Chain C, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To The Product Mimic Malonate
pdb|3OQ8|D Chain D, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To The Product Mimic Malonate
pdb|3P0X|A Chain A, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To Magnesium Isocitrate
pdb|3P0X|B Chain B, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To Magnesium Isocitrate
pdb|3P0X|C Chain C, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To Magnesium Isocitrate
pdb|3P0X|D Chain D, Crystal Structure Of Isocitrate Lyase From Brucella
Melitensis, Bound To Magnesium Isocitrate
Length = 433
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 2 GGGNALNVQRTVKDLVAAGAAGCFLEDQ-SWPKKCGHMHGKQIIPAEEHAAKIASAR--- 57
G G L+ +K + AGAAG EDQ + KKCGH+ GK +IP H + +AR
Sbjct: 155 GFGGPLDAFEIMKAYIEAGAAGVHFEDQLASEKKCGHLGGKVLIPTAAHIRNLNAARLAA 214
Query: 58 DAIGDSDFVLARADA 72
D +G ++AR DA
Sbjct: 215 DVMGTPTLIVARTDA 229
>pdb|1M1B|A Chain A, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Sulfopyruvate
pdb|1M1B|B Chain B, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Sulfopyruvate
pdb|1S2T|A Chain A, Crystal Structure Of Apo Phosphoenolpyruvate Mutase
pdb|1S2T|B Chain B, Crystal Structure Of Apo Phosphoenolpyruvate Mutase
pdb|1S2V|A Chain A, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Mg(ii)
pdb|1S2V|B Chain B, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Mg(ii)
pdb|1S2V|C Chain C, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Mg(ii)
pdb|1S2V|D Chain D, Crystal Structure Of Phosphoenolpyruvate Mutase Complexed
With Mg(ii)
pdb|1S2W|A Chain A, Crystal Structure Of Phosphoenolpyruvate Mutase In High
Ionic Strength
Length = 295
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 1 TGGGNALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIP---AEEHAAKIASAR 57
TG GN N +R V+ L G AG LED+ +P K +H + P EE A KI + +
Sbjct: 88 TGYGNFNNARRLVRKLEDRGVAGACLEDKLFP-KTNSLHDGRAQPLADIEEFALKIKACK 146
Query: 58 DAIGDSDF-VLARADA 72
D+ D DF ++AR +A
Sbjct: 147 DSQTDPDFCIVARVEA 162
>pdb|1S2U|A Chain A, Crystal Structure Of The D58a Phosphoenolpyruvate Mutase
Mutant Protein
pdb|1S2U|B Chain B, Crystal Structure Of The D58a Phosphoenolpyruvate Mutase
Mutant Protein
Length = 295
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 1 TGGGNALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIP---AEEHAAKIASAR 57
TG GN N +R V+ L G AG LED+ +P K +H + P EE A KI + +
Sbjct: 88 TGYGNFNNARRLVRKLEDRGVAGACLEDKLFP-KTNSLHDGRAQPLADIEEFALKIKACK 146
Query: 58 DAIGDSDF-VLARADA 72
D+ D DF ++AR +A
Sbjct: 147 DSQTDPDFCIVARVEA 162
>pdb|1PYM|A Chain A, Phosphoenolpyruvate Mutase From Mollusk In With Bound
Mg2-oxalate
pdb|1PYM|B Chain B, Phosphoenolpyruvate Mutase From Mollusk In With Bound
Mg2-oxalate
Length = 295
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 1 TGGGNALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIP---AEEHAAKIASAR 57
TG GN N +R V+ L G AG LED+ +P K +H + P EE A KI + +
Sbjct: 88 TGYGNFNNARRLVRKLEDRGVAGACLEDKLFP-KTNSLHDGRAQPLADIEEFALKIKACK 146
Query: 58 DAIGDSDF-VLARADA 72
D+ D DF ++AR +A
Sbjct: 147 DSQTDPDFCIVARVEA 162
>pdb|3B8I|A Chain A, Crystal Structure Of Oxaloacetate Decarboxylase From
Pseudomonas Aeruginosa (Pa4872) In Complex With Oxalate
And Mg2+.
pdb|3B8I|B Chain B, Crystal Structure Of Oxaloacetate Decarboxylase From
Pseudomonas Aeruginosa (Pa4872) In Complex With Oxalate
And Mg2+.
pdb|3B8I|C Chain C, Crystal Structure Of Oxaloacetate Decarboxylase From
Pseudomonas Aeruginosa (Pa4872) In Complex With Oxalate
And Mg2+.
pdb|3B8I|D Chain D, Crystal Structure Of Oxaloacetate Decarboxylase From
Pseudomonas Aeruginosa (Pa4872) In Complex With Oxalate
And Mg2+.
pdb|3B8I|E Chain E, Crystal Structure Of Oxaloacetate Decarboxylase From
Pseudomonas Aeruginosa (Pa4872) In Complex With Oxalate
And Mg2+.
pdb|3B8I|F Chain F, Crystal Structure Of Oxaloacetate Decarboxylase From
Pseudomonas Aeruginosa (Pa4872) In Complex With Oxalate
And Mg2+
Length = 287
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 2 GGGNALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIG 61
G GNALNV RTV +L AG A +ED P + G +I EE KI +A +A
Sbjct: 92 GYGNALNVMRTVVELERAGIAALTIEDTLLPAQFGR-KSTDLICVEEGVGKIRAALEARV 150
Query: 62 DSDF-VLARADASFVE 76
D ++AR +A ++
Sbjct: 151 DPALTIIARTNAELID 166
>pdb|2DUA|A Chain A, Crystal Structure Of Phosphonopyruvate Hydrolase Complex
With Oxalate And Mg++
pdb|2HJP|A Chain A, Crystal Structure Of Phosphonopyruvate Hydrolase Complex
With Phosphonopyruvate And Mg++
pdb|2HRW|A Chain A, Crystal Structure Of Phosphonopyruvate Hydrolase
Length = 290
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 1 TGGGNALNVQRTVKDLVAAGAAGCFLEDQSWPKKCG-HMHGKQ-IIPAEEHAAKIASARD 58
TG GNA+NV V AAGA+ +ED+++PK G+Q ++ EE KIA+A
Sbjct: 84 TGFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATA 143
Query: 59 AIGDSDF-VLARADA 72
A D DF V+AR +A
Sbjct: 144 ARADRDFVVIARVEA 158
>pdb|2O57|A Chain A, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|B Chain B, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|C Chain C, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
pdb|2O57|D Chain D, Crystal Structure Of A Putative Sarcosine Dimethylglycine
Methyltransferase From Galdieria Sulphuraria
Length = 297
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 72 ASFVEAPRNDNEANWVWGHT--LHTPEELKAMGFHLTVHPLTALYASARALVDVLKTLKE 129
SF+E P DN +++W LH+P++LK V A R + + KE
Sbjct: 139 GSFLEIPCEDNSYDFIWSQDAFLHSPDKLK-------VFQECARVLKPRGVXAITDPXKE 191
Query: 130 SGTTRDHLEKM 140
G + ++ +
Sbjct: 192 DGIDKSSIQPI 202
>pdb|1I51|E Chain E, Crystal Structure Of Caspase-7 Complexed With Xiap
pdb|1I51|F Chain F, Crystal Structure Of Caspase-7 Complexed With Xiap
Length = 117
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 45 PAEEHAAKIASARDAIGDSDFVLARADASFVEAPRNDNEANWV-WGHTLHTPEELKAMGF 103
P+E HA + + SD + R A + E R + NW + H TP EL + G
Sbjct: 9 PSETHADYLLRTGQVVDISDTIYPRNPAMYCEEARLKSFQNWPDYAHL--TPRELASAGL 66
Query: 104 HLT 106
+ T
Sbjct: 67 YYT 69
>pdb|1KMC|C Chain C, Crystal Structure Of The Caspase-7 XIAP-Bir2 Complex
pdb|1KMC|D Chain D, Crystal Structure Of The Caspase-7 XIAP-Bir2 Complex
Length = 119
Score = 30.0 bits (66), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 45 PAEEHAAKIASARDAIGDSDFVLARADASFVEAPRNDNEANWV-WGHTLHTPEELKAMGF 103
P+E HA + + SD + R A + E R + NW + H TP EL + G
Sbjct: 9 PSETHADYLLRTGQVVDISDTIYPRNPAMYCEEARLKSFQNWPDYAHL--TPRELASAGL 66
Query: 104 HLT 106
+ T
Sbjct: 67 YYT 69
>pdb|1I3O|E Chain E, Crystal Structure Of The Complex Of Xiap-Bir2 And Caspase
3
pdb|1I3O|F Chain F, Crystal Structure Of The Complex Of Xiap-Bir2 And Caspase
3
Length = 121
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 45 PAEEHAAKIASARDAIGDSDFVLARADASFVEAPRNDNEANWV-WGHTLHTPEELKAMGF 103
P+E HA + + SD + R A + E R + NW + H TP EL + G
Sbjct: 13 PSETHADYLLRTGQVVDISDTIYPRNPAMYSEEARLKSFQNWPDYAHL--TPRELASAGL 70
Query: 104 HLT 106
+ T
Sbjct: 71 YYT 73
>pdb|1C9Q|A Chain A, Average Nmr Solution Structure Of The Bir-2 Domain Of Xiap
Length = 117
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 45 PAEEHAAKIASARDAIGDSDFVLARADASFVEAPRNDNEANWV-WGHTLHTPEELKAMGF 103
P+E HA + + SD + R A + E R + NW + H TP EL + G
Sbjct: 9 PSETHADYLLRTGQVVDISDTIYPRNPAMYSEEARLKSFQNWPDYAHL--TPRELASAGL 66
Query: 104 HLT 106
+ T
Sbjct: 67 YYT 69
>pdb|1I4O|C Chain C, Crystal Structure Of The XiapCASPASE-7 Complex
pdb|1I4O|D Chain D, Crystal Structure Of The XiapCASPASE-7 Complex
Length = 141
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 45 PAEEHAAKIASARDAIGDSDFVLARADASFVEAPRNDNEANWV-WGHTLHTPEELKAMGF 103
P+E HA + + SD + R A + E R + NW + H TP EL + G
Sbjct: 13 PSETHADYLLRTGQVVDISDTIYPRNPAMYSEEARLKSFQNWPDYAHL--TPRELASAGL 70
Query: 104 HLT 106
+ T
Sbjct: 71 YYT 73
>pdb|1KI6|A Chain A, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With A 5-Iodouracil
Anhydrohexitol Nucleoside
Length = 331
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 30 SWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVLARADASFVEAPRNDNEANWVW 88
SW + G + G + P A AR IGD+ F L RA AP D + W
Sbjct: 209 SWREDWGQLSGTAVPPQGAEPQSNAGARPHIGDTLFTLFRAPELL--APNGDLYNVFAW 265
>pdb|3MDU|A Chain A, The Structure Of N-Formimino-L-Glutamate Iminohydrolase
From Pseudomonas Aeruginosa Complexed With
N-Guanidino-L-Glutamate
pdb|3MDW|A Chain A, The Structure Of N-Formimino-L-Glutamate Iminohydrolase
From Pseudomonas Aeruginosa Complexed With
N-Formimino-L-Aspartate
pdb|3MDW|B Chain B, The Structure Of N-Formimino-L-Glutamate Iminohydrolase
From Pseudomonas Aeruginosa Complexed With
N-Formimino-L-Aspartate
pdb|3MDW|C Chain C, The Structure Of N-Formimino-L-Glutamate Iminohydrolase
From Pseudomonas Aeruginosa Complexed With
N-Formimino-L-Aspartate
pdb|3MDW|D Chain D, The Structure Of N-Formimino-L-Glutamate Iminohydrolase
From Pseudomonas Aeruginosa Complexed With
N-Formimino-L-Aspartate
Length = 453
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 69 RADASFVEAPRNDNEANWVWGHTLH------TPEELKAMGFHLTVHPLTALYAS 116
RA A E N N++ W W ++ +PE+++ + L + L A Y +
Sbjct: 62 RAMAGLAEVAGNPNDSFWTWRELMYRMVARLSPEQIEVIACQLYIEMLKAGYTA 115
>pdb|1P7C|A Chain A, Crystal Structure Of Hsv1-Tk Complexed With Tp5a
pdb|1P7C|B Chain B, Crystal Structure Of Hsv1-Tk Complexed With Tp5a
pdb|1VTK|A Chain A, Thymidine Kinase From Herpes Simplex Virus Type 1 In
Complex With Adp And Deoxythymidine-monophosphate
pdb|2VTK|A Chain A, Thymidine Kinase From Herpes Simplex Virus Type 1 In
Complex With Adp And Deoxythymidine
pdb|3VTK|A Chain A, Thymidine Kinase From Herpes Simplex Virus Type 1 In
Complex With Adp And 5-Iodo-Deoxyuridine-Monophosphate
Length = 343
Score = 27.3 bits (59), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 30 SWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVLARADASFVEAPRNDNEANWVW 88
SW + G + G + P A R IGD+ F L RA AP D + W
Sbjct: 221 SWREDWGQLSGTAVPPQGAEPQSNAGPRPHIGDTLFTLFRAPELL--APNGDLYNVFAW 277
>pdb|1KI2|A Chain A, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With Ganciclovir
pdb|1KI2|B Chain B, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With Ganciclovir
pdb|1KI4|A Chain A, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With 5-Bromothienyldeoxyuridine
pdb|1KI4|B Chain B, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With 5-Bromothienyldeoxyuridine
pdb|1KI7|A Chain A, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With 5-Iododeoxyuridine
pdb|1KI7|B Chain B, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With 5-Iododeoxyuridine
pdb|1KI8|A Chain A, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With 5-Bromovinyldeoxyuridine
pdb|1KI8|B Chain B, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With 5-Bromovinyldeoxyuridine
pdb|1KI6|B Chain B, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With A 5-Iodouracil
Anhydrohexitol Nucleoside
pdb|1KI3|A Chain A, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With Penciclovir
pdb|1KI3|B Chain B, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With Penciclovir
pdb|1E2K|A Chain A, Kinetics And Crystal Structure Of The Wild-Type And The
Engineered Y101f Mutant Of Herpes Simplex Virus Type 1
Thymidine Kinase Interacting With (North)-Methanocarba-
Thymidine
pdb|1E2K|B Chain B, Kinetics And Crystal Structure Of The Wild-Type And The
Engineered Y101f Mutant Of Herpes Simplex Virus Type 1
Thymidine Kinase Interacting With (North)-Methanocarba-
Thymidine
pdb|1E2H|A Chain A, The Nucleoside Binding Site Of Herpes Simplex Type 1
Thymidine Kinase Analyzed By X-Ray Crystallography
pdb|1E2H|B Chain B, The Nucleoside Binding Site Of Herpes Simplex Type 1
Thymidine Kinase Analyzed By X-Ray Crystallography
pdb|1E2I|A Chain A, The Nucleoside Binding Site Of Herpes Simplex Type 1
Thymidine Kinase Analyzed By X-Ray Crystallography
pdb|1E2I|B Chain B, The Nucleoside Binding Site Of Herpes Simplex Type 1
Thymidine Kinase Analyzed By X-Ray Crystallography
pdb|1E2M|A Chain A, Hpt + Hmtt
pdb|1E2M|B Chain B, Hpt + Hmtt
pdb|1E2N|A Chain A, Hpt + Hmtt
pdb|1E2N|B Chain B, Hpt + Hmtt
pdb|1E2P|A Chain A, Thymidine Kinase, Dhbt
pdb|1E2P|B Chain B, Thymidine Kinase, Dhbt
pdb|3RDP|A Chain A, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type 1 In Complex With N-Methyl-Fhbt
pdb|3RDP|B Chain B, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type 1 In Complex With N-Methyl-Fhbt
pdb|4IVP|A Chain A, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type 1 In Complex With In51/20
pdb|4IVP|B Chain B, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type 1 In Complex With In51/20
pdb|4IVQ|A Chain A, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type 1 In Complex With In43/5
pdb|4IVQ|B Chain B, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type 1 In Complex With In43/5
pdb|4IVR|A Chain A, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type 1 In Complex With In52/10
pdb|4IVR|B Chain B, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type 1 In Complex With In52/10
Length = 331
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 30 SWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVLARADASFVEAPRNDNEANWVW 88
SW + G + G + P A R IGD+ F L RA AP D + W
Sbjct: 209 SWREDWGQLSGTAVPPQGAEPQSNAGPRPHIGDTLFTLFRAPELL--APNGDLYNVFAW 265
>pdb|1E2L|A Chain A, Kinetics And Crystal Structure Of The Wild-Type And The
Engineered Y101f Mutant Of Herpes Simplex Virus Type 1
Thymidine Kinase Interacting With (North)-Methanocarba-
Thymidine
pdb|1E2L|B Chain B, Kinetics And Crystal Structure Of The Wild-Type And The
Engineered Y101f Mutant Of Herpes Simplex Virus Type 1
Thymidine Kinase Interacting With (North)-Methanocarba-
Thymidine
Length = 331
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 30 SWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVLARADASFVEAPRNDNEANWVW 88
SW + G + G + P A R IGD+ F L RA AP D + W
Sbjct: 209 SWREDWGQLSGTAVPPQGAEPQSNAGPRPHIGDTLFTLFRAPELL--APNGDLYNVFAW 265
>pdb|3F0T|A Chain A, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type 1 In Complex With N-Methyl-Dhbt
pdb|3F0T|B Chain B, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type 1 In Complex With N-Methyl-Dhbt
Length = 332
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 30 SWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVLARADASFVEAPRNDNEANWVW 88
SW + G + G + P A R IGD+ F L RA AP D + W
Sbjct: 210 SWREDWGQLSGTAVPPQGAEPQSNAGPRPHIGDTLFTLFRAPELL--APNGDLYNVFAW 266
>pdb|1E2J|A Chain A, The Nucleoside Binding Site Of Herpes Simplex Type 1
Thymidine Kinase Analyzed By X-Ray Crystallography
pdb|1E2J|B Chain B, The Nucleoside Binding Site Of Herpes Simplex Type 1
Thymidine Kinase Analyzed By X-Ray Crystallography
Length = 331
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 30 SWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVLARADASFVEAPRNDNEANWVW 88
SW + G + G + P A R IGD+ F L RA AP D + W
Sbjct: 209 SWREDWGQLSGTAVPPQGAEPQSNAGPRPHIGDTLFTLFRAPELL--APNGDLYNVFAW 265
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 103 FHLTVHPLTALYASARALVDVLK 125
+HL +T L+ RALVD LK
Sbjct: 384 YHLNPETITILFVKTRALVDALK 406
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 103 FHLTVHPLTALYASARALVDVLK 125
+HL +T L+ RALVD LK
Sbjct: 393 YHLNPETITILFVKTRALVDALK 415
>pdb|1QHI|A Chain A, Herpes Simplex Virus Type-i Thymidine Kinase Complexed
With A Novel Non-substrate Inhibitor,
9-(4-hydroxybutyl)-n2- Phenylguanine
pdb|1QHI|B Chain B, Herpes Simplex Virus Type-i Thymidine Kinase Complexed
With A Novel Non-substrate Inhibitor,
9-(4-hydroxybutyl)-n2- Phenylguanine
Length = 366
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 30 SWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVLARADASFVEAPRNDNEANWVW 88
SW + G + G + P A R IGD+ F L RA AP D + W
Sbjct: 244 SWREDWGQLSGTAVPPQGAEPQSNAGPRPHIGDTLFTLFRAPELL--APNGDLYNVFAW 300
>pdb|1KIM|A Chain A, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With Deoxythymidine
pdb|1KIM|B Chain B, Crystal Structure Of Thymidine Kinase From Herpes Simplex
Virus Type I Complexed With Deoxythymidine
pdb|2KI5|A Chain A, Herpes Simplex Type-1 Thymidine Kinase In Complex With The
Drug Aciclovir At 1.9a Resolution
pdb|2KI5|B Chain B, Herpes Simplex Type-1 Thymidine Kinase In Complex With The
Drug Aciclovir At 1.9a Resolution
Length = 366
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 30 SWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVLARADASFVEAPRNDNEANWVW 88
SW + G + G + P A R IGD+ F L RA AP D + W
Sbjct: 244 SWREDWGQLSGTAVPPQGAEPQSNAGPRPHIGDTLFTLFRAPELL--APNGDLYNVFAW 300
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 26.9 bits (58), Expect = 5.7, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 103 FHLTVHPLTALYASARALVDVLKTLKE 129
+HL +T L+ RALVD LK E
Sbjct: 392 YHLNPETITILFVKTRALVDALKNWIE 418
>pdb|1OF1|A Chain A, Kinetics And Crystal Structure Of The Herpes Simplex Virus
Type 1 Thymidine Kinase Interacting With
(South)-Methanocarba-Thymidine
pdb|1OF1|B Chain B, Kinetics And Crystal Structure Of The Herpes Simplex Virus
Type 1 Thymidine Kinase Interacting With
(South)-Methanocarba-Thymidine
Length = 376
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 30 SWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVLARADASFVEAPRNDNEANWVW 88
SW + G + G + P A R IGD+ F L RA AP D + W
Sbjct: 254 SWREDWGQLSGTAVPPQGAEPQSNAGPRPHIGDTLFTLFRAPELL--APNGDLYNVFAW 310
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 11/59 (18%)
Query: 46 AEEHAAKIASARDAIGDSDFVLARADASFV-----------EAPRNDNEANWVWGHTLH 93
A+E KI +A+GD D + D ++V E PR NWV+ + L
Sbjct: 10 ADELVVKIKDMFNALGDGDISPSAYDTAWVARLATISSDGSEKPRFPQALNWVFNNQLQ 68
>pdb|2IUY|A Chain A, Crystal Structure Of Avigt4, A Glycosyltransferase
Involved In Avilamycin A Biosynthesis
pdb|2IUY|B Chain B, Crystal Structure Of Avigt4, A Glycosyltransferase
Involved In Avilamycin A Biosynthesis
Length = 342
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 23 GCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL 67
GC ++ CG +IP A+ SA D + DF+L
Sbjct: 122 GCTYSSRAQRAHCGGGDDAPVIPIPVDPARYRSAADQVAKEDFLL 166
>pdb|2IV3|A Chain A, Crystal Structure Of Avigt4, A Glycosyltransferase
Involved In Avilamycin A Biosynthesis
pdb|2IV3|B Chain B, Crystal Structure Of Avigt4, A Glycosyltransferase
Involved In Avilamycin A Biosynthesis
pdb|2IV3|C Chain C, Crystal Structure Of Avigt4, A Glycosyltransferase
Involved In Avilamycin A Biosynthesis
pdb|2IV3|D Chain D, Crystal Structure Of Avigt4, A Glycosyltransferase
Involved In Avilamycin A Biosynthesis
Length = 342
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 23 GCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL 67
GC ++ CG +IP A+ SA D + DF+L
Sbjct: 122 GCTYSSRAQRAHCGGGDDAPVIPIPVDPARYRSAADQVAKEDFLL 166
>pdb|3DA1|A Chain A, X-Ray Structure Of The Glycerol-3-Phosphate Dehydrogenase
From Bacillus Halodurans Complexed With Fad. Northeast
Structural Genomics Consortium Target Bhr167
Length = 561
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 53 IASARDAIGDSDFVLARADASF--VEAPRNDNEANW 86
IAS R + D D++LA A+ F + +D E++W
Sbjct: 301 IASPRXTVEDRDYILAAANYXFPSLRLTADDVESSW 336
>pdb|3SJ1|X Chain X, Ppca M58d Mutant
Length = 71
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 20 GAAGCFLEDQSWPKKCGHMHGK 41
G GC ED+ P KCG H K
Sbjct: 50 GCKGCHEEDKKGPTKCGECHKK 71
>pdb|1YAA|A Chain A, Aspartate Aminotransferase From Saccharomyces Cerevisiae
Cytoplasm
pdb|1YAA|B Chain B, Aspartate Aminotransferase From Saccharomyces Cerevisiae
Cytoplasm
pdb|1YAA|C Chain C, Aspartate Aminotransferase From Saccharomyces Cerevisiae
Cytoplasm
pdb|1YAA|D Chain D, Aspartate Aminotransferase From Saccharomyces Cerevisiae
Cytoplasm
Length = 412
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 134 RDHLEKMGTFEEFNQLVNLESWFEIEGRYSNFKKAVEKKY 173
RDHL K+GT ++ +VN F G K +E+ +
Sbjct: 338 RDHLVKLGTPGNWDHIVNQCGMFSFTGLTPQMVKRLEETH 377
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,437,056
Number of Sequences: 62578
Number of extensions: 210591
Number of successful extensions: 602
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 553
Number of HSP's gapped (non-prelim): 60
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)