Query 037554
Match_columns 173
No_of_seqs 144 out of 1163
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 13:27:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037554.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037554hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2513 PrpB PEP phosphonomuta 100.0 3.4E-46 7.3E-51 313.7 16.4 164 1-164 87-289 (289)
2 TIGR02317 prpB methylisocitrat 100.0 9.9E-46 2.2E-50 313.5 19.2 164 1-164 82-284 (285)
3 PRK11320 prpB 2-methylisocitra 100.0 4.8E-45 1E-49 310.1 19.0 165 1-165 87-291 (292)
4 TIGR02319 CPEP_Pphonmut carbox 100.0 8.5E-45 1.8E-49 308.8 18.8 165 1-165 86-292 (294)
5 TIGR02321 Pphn_pyruv_hyd phosp 100.0 7.7E-43 1.7E-47 296.5 18.9 164 1-164 84-290 (290)
6 TIGR02320 PEP_mutase phosphoen 100.0 2.6E-37 5.5E-42 262.2 17.8 153 1-154 87-285 (285)
7 PF13714 PEP_mutase: Phosphoen 100.0 1.1E-33 2.5E-38 234.6 14.0 123 1-128 78-238 (238)
8 PRK15063 isocitrate lyase; Pro 100.0 1.3E-31 2.9E-36 236.1 15.3 135 1-135 155-372 (428)
9 cd00377 ICL_PEPM Members of th 100.0 1.3E-30 2.9E-35 216.6 14.5 125 1-125 78-242 (243)
10 PRK06498 isocitrate lyase; Pro 99.9 2.2E-22 4.8E-27 179.1 14.1 67 1-67 187-257 (531)
11 TIGR01346 isocit_lyase isocitr 99.8 1.6E-20 3.5E-25 168.8 14.8 67 1-67 159-228 (527)
12 KOG1260 Isocitrate lyase [Ener 99.8 6.9E-20 1.5E-24 161.2 12.9 134 1-134 157-444 (492)
13 PLN02892 isocitrate lyase 99.8 2E-19 4.4E-24 162.7 14.6 67 1-67 178-247 (570)
14 COG2224 AceA Isocitrate lyase 99.8 1.9E-19 4.1E-24 157.1 12.4 136 1-136 161-379 (433)
15 PF00463 ICL: Isocitrate lyase 99.8 1.6E-18 3.4E-23 155.8 12.2 135 1-135 158-473 (526)
16 cd06556 ICL_KPHMT Members of t 99.3 7.3E-12 1.6E-16 104.3 6.8 69 1-87 82-186 (240)
17 cd06557 KPHMT-like Ketopantoat 98.9 2.5E-09 5.4E-14 89.8 6.4 67 3-87 85-188 (254)
18 PRK00311 panB 3-methyl-2-oxobu 98.8 1.4E-08 3E-13 85.8 7.5 68 2-87 87-191 (264)
19 TIGR00222 panB 3-methyl-2-oxob 98.2 4.2E-06 9E-11 70.8 7.9 69 1-87 86-190 (263)
20 PLN02424 ketopantoate hydroxym 97.2 0.0011 2.3E-08 57.9 7.3 78 3-87 108-212 (332)
21 cd00958 DhnA Class I fructose- 95.4 0.23 5E-06 40.5 10.5 98 7-115 76-220 (235)
22 TIGR01949 AroFGH_arch predicte 95.2 0.23 5.1E-06 41.4 9.9 96 9-115 92-233 (258)
23 COG0042 tRNA-dihydrouridine sy 94.1 1.2 2.7E-05 38.6 12.0 109 5-113 77-232 (323)
24 PRK00278 trpC indole-3-glycero 92.6 0.86 1.9E-05 38.3 8.4 94 7-110 70-188 (260)
25 cd00952 CHBPH_aldolase Trans-o 92.3 0.59 1.3E-05 40.1 7.3 75 5-87 27-125 (309)
26 PRK05692 hydroxymethylglutaryl 92.1 0.76 1.7E-05 39.2 7.6 45 5-60 153-197 (287)
27 TIGR00674 dapA dihydrodipicoli 92.1 1.3 2.7E-05 37.4 8.9 75 5-87 17-115 (285)
28 cd00954 NAL N-Acetylneuraminic 92.0 1.3 2.8E-05 37.5 8.9 75 5-87 19-118 (288)
29 cd00953 KDG_aldolase KDG (2-ke 91.8 0.81 1.8E-05 38.6 7.4 73 5-87 18-114 (279)
30 cd04724 Tryptophan_synthase_al 91.6 1.9 4.1E-05 35.7 9.3 27 1-27 8-34 (242)
31 PF02548 Pantoate_transf: Keto 91.3 0.5 1.1E-05 40.1 5.6 117 11-133 27-177 (261)
32 PLN02417 dihydrodipicolinate s 91.3 1.6 3.6E-05 36.8 8.8 75 5-87 20-118 (280)
33 PRK13802 bifunctional indole-3 91.3 0.6 1.3E-05 44.8 6.7 70 7-87 70-152 (695)
34 COG0134 TrpC Indole-3-glycerol 90.7 0.49 1.1E-05 40.0 5.0 70 7-87 66-148 (254)
35 cd00951 KDGDH 5-dehydro-4-deox 90.3 2.2 4.8E-05 36.1 8.7 75 5-87 19-116 (289)
36 cd06556 ICL_KPHMT Members of t 90.3 0.61 1.3E-05 39.0 5.2 66 12-78 24-111 (240)
37 CHL00200 trpA tryptophan synth 90.2 5.3 0.00011 33.8 10.8 28 2-29 98-128 (263)
38 TIGR00683 nanA N-acetylneurami 90.2 2.3 5.1E-05 36.1 8.8 75 5-87 19-118 (290)
39 PRK04147 N-acetylneuraminate l 90.1 2.2 4.7E-05 36.1 8.6 75 5-87 22-121 (293)
40 PRK03170 dihydrodipicolinate s 90.0 2.7 5.9E-05 35.4 9.0 75 5-87 20-118 (292)
41 cd00331 IGPS Indole-3-glycerol 89.7 1.8 3.8E-05 34.9 7.3 93 7-109 31-148 (217)
42 cd00564 TMP_TenI Thiamine mono 89.5 2.7 5.8E-05 32.3 8.0 93 7-110 12-123 (196)
43 TIGR02313 HpaI-NOT-DapA 2,4-di 89.3 2 4.3E-05 36.6 7.7 75 5-87 19-117 (294)
44 COG0329 DapA Dihydrodipicolina 89.2 1.9 4.2E-05 36.9 7.6 66 5-78 23-108 (299)
45 TIGR03249 KdgD 5-dehydro-4-deo 89.0 3.2 7E-05 35.2 8.8 75 5-87 24-121 (296)
46 cd07945 DRE_TIM_CMS Leptospira 88.9 2 4.4E-05 36.5 7.5 45 5-60 145-189 (280)
47 TIGR00222 panB 3-methyl-2-oxob 88.8 5.6 0.00012 33.8 10.0 75 11-87 26-125 (263)
48 cd00950 DHDPS Dihydrodipicolin 88.8 3.4 7.4E-05 34.6 8.7 75 5-87 19-117 (284)
49 TIGR00640 acid_CoA_mut_C methy 88.7 3.9 8.5E-05 30.9 8.1 90 11-125 20-128 (132)
50 PLN02746 hydroxymethylglutaryl 88.5 2.2 4.9E-05 37.6 7.6 45 5-60 195-239 (347)
51 TIGR00737 nifR3_yhdG putative 88.3 3.3 7.2E-05 35.5 8.4 109 5-114 73-227 (319)
52 PRK03620 5-dehydro-4-deoxygluc 88.0 4.1 8.9E-05 34.8 8.8 75 5-87 26-123 (303)
53 PF00682 HMGL-like: HMGL-like 88.0 1.9 4E-05 35.0 6.4 47 5-62 135-181 (237)
54 PRK00311 panB 3-methyl-2-oxobu 88.0 0.77 1.7E-05 39.0 4.2 65 12-78 27-116 (264)
55 cd07944 DRE_TIM_HOA_like 4-hyd 87.8 2.5 5.5E-05 35.5 7.3 45 5-60 136-180 (266)
56 cd07938 DRE_TIM_HMGL 3-hydroxy 87.7 3 6.5E-05 35.3 7.7 45 5-60 147-191 (274)
57 TIGR00742 yjbN tRNA dihydrouri 87.6 8.5 0.00018 33.4 10.6 111 3-114 62-228 (318)
58 PLN02460 indole-3-glycerol-pho 87.6 1.6 3.4E-05 38.5 6.0 93 7-110 139-259 (338)
59 PLN02424 ketopantoate hydroxym 87.2 1.7 3.6E-05 38.2 5.9 75 11-87 46-147 (332)
60 cd07948 DRE_TIM_HCS Saccharomy 87.1 2.9 6.3E-05 35.2 7.2 46 3-59 136-182 (262)
61 PRK12330 oxaloacetate decarbox 87.1 2.5 5.4E-05 39.1 7.3 45 5-60 153-197 (499)
62 PRK10128 2-keto-3-deoxy-L-rham 86.9 3.2 7E-05 35.2 7.4 64 11-87 30-108 (267)
63 COG0157 NadC Nicotinate-nucleo 86.7 1.2 2.7E-05 38.1 4.7 43 68-111 207-264 (280)
64 cd00408 DHDPS-like Dihydrodipi 86.6 4.1 8.8E-05 34.0 7.8 75 5-87 16-114 (281)
65 cd07940 DRE_TIM_IPMS 2-isoprop 86.6 3.9 8.4E-05 34.2 7.7 45 5-60 141-185 (268)
66 cd06557 KPHMT-like Ketopantoat 86.5 1.1 2.3E-05 37.9 4.2 65 12-78 24-113 (254)
67 PRK08195 4-hyroxy-2-oxovalerat 86.5 2.8 6.1E-05 36.6 7.0 51 5-67 142-192 (337)
68 PF00218 IGPS: Indole-3-glycer 86.1 1.2 2.6E-05 37.6 4.4 70 7-87 68-150 (254)
69 TIGR01163 rpe ribulose-phospha 85.8 3.6 7.8E-05 32.4 6.9 92 5-108 9-132 (210)
70 PRK10558 alpha-dehydro-beta-de 85.6 3.8 8.3E-05 34.4 7.2 64 11-87 31-109 (256)
71 PRK06552 keto-hydroxyglutarate 85.4 14 0.0003 30.2 10.2 87 5-108 23-135 (213)
72 PRK12581 oxaloacetate decarbox 85.1 3.5 7.5E-05 37.9 7.2 39 9-58 165-203 (468)
73 PRK12331 oxaloacetate decarbox 85.0 3.8 8.1E-05 37.3 7.3 44 6-60 153-196 (448)
74 TIGR03239 GarL 2-dehydro-3-deo 85.0 4.4 9.6E-05 33.9 7.3 64 11-87 24-102 (249)
75 TIGR03217 4OH_2_O_val_ald 4-hy 84.9 3.9 8.5E-05 35.7 7.1 51 5-67 141-191 (333)
76 PRK14041 oxaloacetate decarbox 84.6 3.9 8.5E-05 37.5 7.3 44 6-60 152-195 (467)
77 PF00701 DHDPS: Dihydrodipicol 84.5 6.9 0.00015 32.9 8.3 75 5-87 20-118 (289)
78 cd03174 DRE_TIM_metallolyase D 84.2 4.7 0.0001 32.9 7.0 45 5-60 144-188 (265)
79 cd00564 TMP_TenI Thiamine mono 84.1 4.3 9.3E-05 31.2 6.4 22 93-114 162-183 (196)
80 COG2185 Sbm Methylmalonyl-CoA 84.0 4.1 8.9E-05 31.6 6.1 36 91-126 104-139 (143)
81 PRK06543 nicotinate-nucleotide 83.4 3 6.5E-05 35.8 5.6 42 68-110 212-266 (281)
82 cd07937 DRE_TIM_PC_TC_5S Pyruv 83.0 5.6 0.00012 33.5 7.2 44 5-59 147-190 (275)
83 COG0413 PanB Ketopantoate hydr 82.9 13 0.00028 31.8 9.1 97 11-109 26-156 (268)
84 cd07943 DRE_TIM_HOA 4-hydroxy- 82.9 6.1 0.00013 32.9 7.3 44 5-59 139-182 (263)
85 cd07941 DRE_TIM_LeuA3 Desulfob 82.7 6.2 0.00013 33.2 7.3 43 6-59 150-192 (273)
86 PLN02334 ribulose-phosphate 3- 82.6 3.7 8.1E-05 33.5 5.8 68 5-78 18-97 (229)
87 cd08205 RuBisCO_IV_RLP Ribulos 82.3 5 0.00011 35.5 6.8 66 5-78 144-232 (367)
88 PRK11177 phosphoenolpyruvate-p 82.2 23 0.0005 33.3 11.4 73 68-141 383-506 (575)
89 PRK11613 folP dihydropteroate 81.8 32 0.0007 29.4 13.2 114 3-133 34-178 (282)
90 PRK13957 indole-3-glycerol-pho 81.7 6 0.00013 33.3 6.8 94 7-111 61-180 (247)
91 COG1794 RacX Aspartate racemas 81.7 6.8 0.00015 32.7 6.9 44 68-111 74-125 (230)
92 PF01729 QRPTase_C: Quinolinat 81.5 3.9 8.5E-05 32.3 5.3 45 68-113 99-159 (169)
93 PRK06978 nicotinate-nucleotide 81.4 2.7 5.9E-05 36.3 4.7 42 68-110 224-278 (294)
94 PLN03228 methylthioalkylmalate 81.3 6.1 0.00013 36.6 7.2 45 5-60 237-281 (503)
95 PLN02591 tryptophan synthase 81.3 20 0.00043 30.1 9.7 28 2-29 85-115 (250)
96 PRK14042 pyruvate carboxylase 81.2 5.5 0.00012 37.6 7.0 44 6-60 153-196 (596)
97 cd02801 DUS_like_FMN Dihydrour 81.0 26 0.00057 27.9 10.2 23 5-27 65-87 (231)
98 cd07939 DRE_TIM_NifV Streptomy 81.0 7.8 0.00017 32.2 7.2 43 6-59 138-180 (259)
99 cd00429 RPE Ribulose-5-phospha 80.9 3.3 7.1E-05 32.6 4.7 70 5-80 10-91 (211)
100 TIGR01108 oadA oxaloacetate de 80.6 7.1 0.00015 36.7 7.5 45 5-60 147-191 (582)
101 PTZ00170 D-ribulose-5-phosphat 80.5 6.2 0.00013 32.4 6.4 27 5-31 17-45 (228)
102 cd03465 URO-D_like The URO-D _ 79.9 14 0.00031 31.1 8.7 34 9-50 170-203 (330)
103 PRK11858 aksA trans-homoaconit 79.7 7.9 0.00017 34.2 7.2 45 5-60 143-187 (378)
104 PRK06559 nicotinate-nucleotide 79.6 4 8.8E-05 35.2 5.1 42 68-110 216-270 (290)
105 TIGR01037 pyrD_sub1_fam dihydr 79.6 33 0.0007 28.9 10.7 69 5-76 101-189 (300)
106 COG5016 Pyruvate/oxaloacetate 79.4 4.9 0.00011 36.5 5.7 40 10-60 159-198 (472)
107 PRK06096 molybdenum transport 79.0 4.2 9.1E-05 34.9 5.0 42 68-110 208-265 (284)
108 TIGR00736 nifR3_rel_arch TIM-b 78.5 19 0.0004 30.0 8.6 109 2-113 75-224 (231)
109 TIGR01417 PTS_I_fam phosphoeno 78.3 17 0.00037 34.1 9.2 47 68-115 382-457 (565)
110 TIGR02311 HpaI 2,4-dihydroxyhe 77.8 12 0.00027 31.1 7.5 64 11-87 24-102 (249)
111 PRK09016 quinolinate phosphori 77.8 5.6 0.00012 34.4 5.5 42 68-110 227-281 (296)
112 PRK00915 2-isopropylmalate syn 77.6 10 0.00023 34.9 7.5 46 5-61 147-192 (513)
113 PRK09282 pyruvate carboxylase 77.4 9.3 0.0002 36.0 7.2 44 6-60 153-196 (592)
114 PRK13753 dihydropteroate synth 77.2 18 0.0004 31.0 8.4 75 5-85 23-113 (279)
115 TIGR02660 nifV_homocitr homoci 77.2 10 0.00022 33.3 7.1 45 5-60 140-184 (365)
116 PRK06106 nicotinate-nucleotide 76.9 6 0.00013 33.9 5.4 43 68-111 213-268 (281)
117 TIGR00262 trpA tryptophan synt 76.8 33 0.00072 28.7 9.8 23 8-30 103-125 (256)
118 cd02940 DHPD_FMN Dihydropyrimi 76.4 13 0.00028 31.6 7.4 21 7-27 180-200 (299)
119 COG0352 ThiE Thiamine monophos 76.3 27 0.00058 28.7 8.9 91 10-111 24-133 (211)
120 TIGR00977 LeuA_rel 2-isopropyl 76.3 10 0.00022 35.2 7.1 45 5-60 152-196 (526)
121 PRK09140 2-dehydro-3-deoxy-6-p 76.1 40 0.00087 27.3 9.9 86 5-108 20-130 (206)
122 TIGR00973 leuA_bact 2-isopropy 75.9 12 0.00026 34.4 7.5 46 5-61 144-189 (494)
123 PRK07896 nicotinate-nucleotide 75.7 6.2 0.00013 34.0 5.2 44 68-112 218-277 (289)
124 PF00834 Ribul_P_3_epim: Ribul 75.6 3 6.5E-05 33.9 3.1 27 5-31 10-38 (201)
125 PRK14040 oxaloacetate decarbox 75.2 12 0.00026 35.4 7.3 43 7-60 155-197 (593)
126 PLN02321 2-isopropylmalate syn 74.9 12 0.00026 35.7 7.2 45 5-60 238-282 (632)
127 cd04739 DHOD_like Dihydroorota 74.9 55 0.0012 28.2 11.2 119 5-127 110-284 (325)
128 TIGR00693 thiE thiamine-phosph 74.8 32 0.00069 26.8 8.7 93 8-111 14-125 (196)
129 PRK10550 tRNA-dihydrouridine s 74.6 9.4 0.0002 33.0 6.1 111 3-113 70-228 (312)
130 PRK13111 trpA tryptophan synth 74.5 50 0.0011 27.8 10.3 28 2-29 96-126 (258)
131 TIGR01334 modD putative molybd 74.3 6.7 0.00015 33.5 5.0 42 68-110 207-264 (277)
132 COG0269 SgbH 3-hexulose-6-phos 73.8 11 0.00024 31.2 6.0 131 8-153 14-185 (217)
133 PF02581 TMP-TENI: Thiamine mo 73.8 32 0.00068 26.8 8.5 94 7-111 12-124 (180)
134 PRK06256 biotin synthase; Vali 73.7 20 0.00044 30.6 7.9 55 6-61 215-269 (336)
135 PLN02716 nicotinate-nucleotide 73.4 8.3 0.00018 33.6 5.4 44 68-111 228-292 (308)
136 PRK12999 pyruvate carboxylase; 73.2 30 0.00066 35.2 10.0 118 2-132 620-791 (1146)
137 TIGR02090 LEU1_arch isopropylm 73.0 13 0.00029 32.6 6.7 44 5-59 139-182 (363)
138 PRK05581 ribulose-phosphate 3- 72.8 7.2 0.00016 31.0 4.7 71 5-81 14-96 (220)
139 PRK06252 methylcobalamin:coenz 72.8 23 0.0005 30.2 8.1 35 9-51 182-216 (339)
140 TIGR01501 MthylAspMutase methy 72.2 16 0.00034 27.9 6.1 28 97-124 105-132 (134)
141 PRK10415 tRNA-dihydrouridine s 72.0 14 0.0003 32.0 6.5 127 3-132 72-245 (321)
142 cd03307 Mta_CmuA_like MtaA_Cmu 71.9 25 0.00055 30.0 8.1 35 9-51 173-207 (326)
143 cd00377 ICL_PEPM Members of th 71.3 12 0.00025 31.1 5.7 63 12-76 21-104 (243)
144 PRK12999 pyruvate carboxylase; 71.1 14 0.0003 37.6 7.1 44 6-60 690-733 (1146)
145 TIGR00736 nifR3_rel_arch TIM-b 71.1 15 0.00032 30.6 6.2 21 7-27 148-168 (231)
146 PRK04302 triosephosphate isome 71.0 30 0.00065 28.0 8.0 94 9-115 74-208 (223)
147 TIGR01463 mtaA_cmuA methyltran 70.8 36 0.00078 29.1 8.8 35 9-51 182-216 (340)
148 PRK00043 thiE thiamine-phospha 70.7 49 0.0011 25.9 9.3 92 7-109 21-131 (212)
149 TIGR01588 citE citrate lyase, 70.2 11 0.00024 32.0 5.5 93 14-117 18-160 (288)
150 PRK12331 oxaloacetate decarbox 70.1 41 0.0009 30.6 9.4 118 2-132 89-254 (448)
151 TIGR03326 rubisco_III ribulose 69.6 69 0.0015 29.0 10.6 65 68-132 297-394 (412)
152 PRK07259 dihydroorotate dehydr 68.9 22 0.00048 30.0 7.0 22 7-28 169-190 (301)
153 PRK11815 tRNA-dihydrouridine s 68.4 18 0.0004 31.3 6.5 73 5-78 75-173 (333)
154 TIGR01496 DHPS dihydropteroate 68.3 26 0.00057 29.3 7.2 64 5-74 21-100 (257)
155 PRK07259 dihydroorotate dehydr 68.3 72 0.0016 26.9 11.9 65 5-75 102-188 (301)
156 PRK12330 oxaloacetate decarbox 68.1 56 0.0012 30.3 9.9 117 2-131 90-256 (499)
157 PRK08318 dihydropyrimidine deh 68.0 12 0.00027 33.2 5.5 24 7-30 180-203 (420)
158 cd04740 DHOD_1B_like Dihydroor 67.7 73 0.0016 26.7 11.4 65 5-75 100-185 (296)
159 PRK06806 fructose-bisphosphate 66.8 80 0.0017 26.9 10.0 29 94-122 215-243 (281)
160 COG0800 Eda 2-keto-3-deoxy-6-p 66.8 42 0.00091 27.7 7.9 85 5-108 23-132 (211)
161 TIGR01235 pyruv_carbox pyruvat 66.8 20 0.00043 36.5 7.1 43 7-60 689-731 (1143)
162 PRK02615 thiamine-phosphate py 66.7 49 0.0011 29.2 8.9 92 8-111 158-269 (347)
163 COG3246 Uncharacterized conser 66.6 26 0.00056 30.4 6.8 54 5-67 27-80 (298)
164 PRK06015 keto-hydroxyglutarate 66.6 69 0.0015 26.0 11.8 98 5-121 14-139 (201)
165 PRK08385 nicotinate-nucleotide 66.4 15 0.00032 31.5 5.4 43 68-111 201-261 (278)
166 PRK08185 hypothetical protein; 66.4 84 0.0018 26.9 10.0 33 94-126 213-245 (283)
167 COG0159 TrpA Tryptophan syntha 66.3 19 0.00041 30.7 6.0 27 2-28 101-130 (265)
168 PRK12344 putative alpha-isopro 66.2 26 0.00057 32.5 7.4 45 5-60 156-200 (524)
169 PRK05848 nicotinate-nucleotide 65.5 13 0.00027 31.8 4.8 44 68-112 201-260 (273)
170 PRK05286 dihydroorotate dehydr 65.2 19 0.00041 31.3 6.0 24 7-30 225-248 (344)
171 PRK05718 keto-hydroxyglutarate 65.0 71 0.0015 26.1 9.0 87 5-110 25-136 (212)
172 PRK03512 thiamine-phosphate py 64.8 51 0.0011 26.7 8.1 86 11-111 23-131 (211)
173 PRK09389 (R)-citramalate synth 64.7 27 0.00058 32.2 7.1 44 5-59 141-184 (488)
174 PRK14042 pyruvate carboxylase 64.5 80 0.0017 30.0 10.3 117 2-131 89-253 (596)
175 TIGR00035 asp_race aspartate r 64.1 37 0.00079 27.6 7.2 42 68-109 74-123 (229)
176 cd08210 RLP_RrRLP Ribulose bis 64.1 27 0.00059 30.9 6.8 48 5-60 139-186 (364)
177 TIGR00262 trpA tryptophan synt 63.6 87 0.0019 26.2 9.7 26 1-26 18-43 (256)
178 PRK05692 hydroxymethylglutaryl 63.5 10 0.00022 32.3 3.9 46 12-60 84-129 (287)
179 PRK12581 oxaloacetate decarbox 63.1 76 0.0016 29.3 9.6 143 2-164 98-288 (468)
180 PF05853 DUF849: Prokaryotic p 62.3 24 0.00052 29.8 6.0 54 6-67 25-78 (272)
181 PRK14040 oxaloacetate decarbox 62.0 83 0.0018 29.8 9.9 117 2-131 90-254 (593)
182 PRK06801 hypothetical protein; 62.0 1E+02 0.0022 26.4 9.8 32 94-125 218-249 (286)
183 COG0119 LeuA Isopropylmalate/h 61.2 33 0.00072 30.9 6.9 46 5-61 144-189 (409)
184 PF03328 HpcH_HpaI: HpcH/HpaI 61.1 12 0.00026 30.1 3.8 114 11-132 12-185 (221)
185 cd04740 DHOD_1B_like Dihydroor 61.0 38 0.00083 28.4 7.0 22 7-28 166-187 (296)
186 PF01207 Dus: Dihydrouridine s 60.9 8.5 0.00018 33.0 3.0 106 5-111 64-215 (309)
187 PF01081 Aldolase: KDPG and KH 60.9 50 0.0011 26.8 7.3 89 5-112 18-131 (196)
188 PLN02898 HMP-P kinase/thiamin- 60.8 56 0.0012 29.8 8.4 89 8-110 308-418 (502)
189 COG3142 CutC Uncharacterized p 60.5 30 0.00065 29.1 6.0 87 68-155 85-197 (241)
190 PRK13111 trpA tryptophan synth 60.4 77 0.0017 26.6 8.6 83 1-87 20-134 (258)
191 PRK05286 dihydroorotate dehydr 60.3 89 0.0019 27.2 9.3 67 6-78 156-247 (344)
192 PLN02334 ribulose-phosphate 3- 60.0 68 0.0015 26.0 8.1 23 93-115 186-208 (229)
193 TIGR00167 cbbA ketose-bisphosp 60.0 1.1E+02 0.0024 26.2 9.8 115 7-126 115-253 (288)
194 CHL00200 trpA tryptophan synth 59.7 82 0.0018 26.6 8.7 26 1-26 23-48 (263)
195 cd02810 DHOD_DHPD_FMN Dihydroo 59.5 57 0.0012 27.1 7.7 57 5-67 109-167 (289)
196 cd02940 DHPD_FMN Dihydropyrimi 59.2 60 0.0013 27.5 7.9 57 5-67 111-173 (299)
197 TIGR03128 RuMP_HxlA 3-hexulose 58.7 39 0.00084 26.6 6.3 43 68-110 75-134 (206)
198 cd02803 OYE_like_FMN_family Ol 58.3 1.1E+02 0.0024 25.8 9.4 20 8-27 142-161 (327)
199 PLN02433 uroporphyrinogen deca 57.9 75 0.0016 27.5 8.4 32 9-50 181-212 (345)
200 cd04730 NPD_like 2-Nitropropan 57.6 52 0.0011 26.3 7.0 36 93-128 169-204 (236)
201 PRK08999 hypothetical protein; 57.5 73 0.0016 26.8 8.2 93 8-111 145-255 (312)
202 PRK15452 putative protease; Pr 57.4 55 0.0012 29.8 7.7 104 11-120 14-152 (443)
203 TIGR01108 oadA oxaloacetate de 57.1 1.4E+02 0.0031 28.1 10.6 144 2-165 84-275 (582)
204 TIGR01037 pyrD_sub1_fam dihydr 56.9 25 0.00055 29.6 5.2 22 7-28 169-190 (300)
205 PF09587 PGA_cap: Bacterial ca 56.3 8.8 0.00019 31.5 2.3 17 6-22 91-107 (250)
206 PRK07114 keto-hydroxyglutarate 56.3 1.1E+02 0.0025 25.1 11.0 139 5-162 25-209 (222)
207 PRK07028 bifunctional hexulose 56.3 92 0.002 27.8 8.9 91 6-110 15-139 (430)
208 PRK08318 dihydropyrimidine deh 56.2 68 0.0015 28.5 8.0 69 5-74 111-198 (420)
209 PRK07998 gatY putative fructos 56.1 1.3E+02 0.0028 25.8 9.9 31 95-125 215-245 (283)
210 PRK01130 N-acetylmannosamine-6 56.0 45 0.00098 26.7 6.4 21 6-26 22-42 (221)
211 COG0069 GltB Glutamate synthas 55.6 21 0.00046 33.0 4.7 38 41-78 282-336 (485)
212 COG2048 HdrB Heterodisulfide r 55.6 18 0.00038 31.4 4.0 67 2-79 164-232 (293)
213 PF00290 Trp_syntA: Tryptophan 55.5 52 0.0011 27.8 6.8 22 8-29 103-124 (259)
214 cd08207 RLP_NonPhot Ribulose b 55.3 1.1E+02 0.0025 27.6 9.3 63 68-130 293-389 (406)
215 TIGR02814 pfaD_fam PfaD family 54.8 93 0.002 28.5 8.7 69 68-138 245-326 (444)
216 PRK09282 pyruvate carboxylase 54.4 91 0.002 29.5 8.9 117 2-131 89-253 (592)
217 TIGR01182 eda Entner-Doudoroff 54.1 1.2E+02 0.0026 24.7 9.8 112 5-135 18-173 (204)
218 KOG2794 Delta-aminolevulinic a 54.1 15 0.00032 31.8 3.2 20 68-87 253-273 (340)
219 PRK05265 pyridoxine 5'-phospha 54.1 1.3E+02 0.0029 25.3 9.4 36 94-129 197-234 (239)
220 PF02679 ComA: (2R)-phospho-3- 53.8 21 0.00046 30.0 4.2 58 8-80 85-171 (244)
221 cd00947 TBP_aldolase_IIB Tagat 53.6 1.4E+02 0.0029 25.5 9.1 115 7-126 107-243 (276)
222 TIGR03217 4OH_2_O_val_ald 4-hy 53.5 93 0.002 27.1 8.3 119 5-131 22-156 (333)
223 cd04739 DHOD_like Dihydroorota 53.0 38 0.00083 29.2 5.8 24 7-30 175-198 (325)
224 TIGR01304 IMP_DH_rel_2 IMP deh 52.8 55 0.0012 29.1 6.8 44 10-58 199-245 (369)
225 TIGR00559 pdxJ pyridoxine 5'-p 52.7 1.4E+02 0.003 25.1 9.1 37 93-129 194-233 (237)
226 TIGR02708 L_lactate_ox L-lacta 52.6 31 0.00068 30.7 5.2 19 10-28 239-257 (367)
227 PRK00115 hemE uroporphyrinogen 52.6 1.1E+02 0.0025 26.3 8.7 32 9-50 188-219 (346)
228 cd04737 LOX_like_FMN L-Lactate 52.3 38 0.00083 29.9 5.7 19 11-29 233-251 (351)
229 PRK10550 tRNA-dihydrouridine s 52.2 91 0.002 26.9 8.0 22 7-28 148-169 (312)
230 PRK06512 thiamine-phosphate py 52.1 1.3E+02 0.0028 24.6 9.0 93 8-111 27-140 (221)
231 cd00452 KDPG_aldolase KDPG and 52.0 1.1E+02 0.0025 23.9 8.6 87 5-110 14-125 (190)
232 TIGR00970 leuA_yeast 2-isoprop 50.4 70 0.0015 30.0 7.4 45 5-60 182-232 (564)
233 cd02911 arch_FMN Archeal FMN-b 50.4 58 0.0012 26.8 6.2 21 7-27 152-172 (233)
234 cd00717 URO-D Uroporphyrinogen 50.4 1.3E+02 0.0028 25.6 8.6 32 9-50 179-210 (335)
235 PF00490 ALAD: Delta-aminolevu 50.3 60 0.0013 28.5 6.4 43 9-67 149-191 (324)
236 PF07905 PucR: Purine cataboli 49.7 24 0.00052 25.9 3.5 30 1-30 49-82 (123)
237 COG1809 (2R)-phospho-3-sulfola 49.6 32 0.0007 28.9 4.5 42 7-59 90-131 (258)
238 cd02911 arch_FMN Archeal FMN-b 49.4 1.5E+02 0.0032 24.4 8.7 54 5-59 83-138 (233)
239 cd02071 MM_CoA_mut_B12_BD meth 49.2 40 0.00087 24.6 4.6 27 94-120 94-120 (122)
240 PRK07455 keto-hydroxyglutarate 48.9 46 0.00099 26.4 5.2 90 5-108 22-131 (187)
241 COG0159 TrpA Tryptophan syntha 48.8 1.7E+02 0.0037 25.0 10.7 79 1-79 25-132 (265)
242 PRK00278 trpC indole-3-glycero 48.7 91 0.002 26.0 7.2 89 12-115 125-246 (260)
243 TIGR01464 hemE uroporphyrinoge 48.6 1.5E+02 0.0032 25.4 8.7 32 9-50 182-213 (338)
244 PLN02591 tryptophan synthase 48.2 34 0.00074 28.7 4.6 147 1-152 10-210 (250)
245 TIGR03849 arch_ComA phosphosul 48.1 62 0.0013 27.2 6.0 39 9-58 73-111 (237)
246 cd04736 MDH_FMN Mandelate dehy 48.1 45 0.00097 29.6 5.5 20 97-116 306-325 (361)
247 PF01208 URO-D: Uroporphyrinog 48.0 75 0.0016 27.0 6.8 32 8-49 183-214 (343)
248 PF13011 LZ_Tnp_IS481: leucine 47.9 66 0.0014 22.7 5.3 47 3-57 35-83 (85)
249 cd04738 DHOD_2_like Dihydrooro 47.6 78 0.0017 27.3 6.8 23 7-29 216-238 (327)
250 cd02810 DHOD_DHPD_FMN Dihydroo 47.1 90 0.0019 25.9 7.0 24 6-29 175-198 (289)
251 PF05690 ThiG: Thiazole biosyn 47.0 43 0.00094 28.3 4.9 29 12-46 136-164 (247)
252 TIGR01235 pyruv_carbox pyruvat 46.8 1.9E+02 0.004 29.8 10.2 145 2-166 618-816 (1143)
253 PF13653 GDPD_2: Glycerophosph 46.7 27 0.00058 19.9 2.6 19 10-28 10-28 (30)
254 PRK08745 ribulose-phosphate 3- 46.4 69 0.0015 26.4 6.0 27 5-31 14-42 (223)
255 PRK08005 epimerase; Validated 46.4 71 0.0015 26.1 6.1 27 5-31 11-39 (210)
256 PRK14041 oxaloacetate decarbox 45.9 87 0.0019 28.8 7.1 113 6-131 93-252 (467)
257 PRK08005 epimerase; Validated 45.8 36 0.00078 27.8 4.3 75 71-149 36-125 (210)
258 PF02896 PEP-utilizers_C: PEP- 45.7 65 0.0014 27.7 6.0 92 43-141 116-258 (293)
259 PRK10415 tRNA-dihydrouridine s 45.2 76 0.0016 27.4 6.4 29 2-30 143-172 (321)
260 cd04823 ALAD_PBGS_aspartate_ri 45.1 83 0.0018 27.6 6.5 21 6-26 53-73 (320)
261 PRK07565 dihydroorotate dehydr 44.7 2E+02 0.0044 24.7 12.1 122 5-130 112-292 (334)
262 TIGR03332 salvage_mtnW 2,3-dik 44.7 2.4E+02 0.0052 25.5 10.8 65 68-132 292-388 (407)
263 PRK05437 isopentenyl pyrophosp 44.5 2.2E+02 0.0047 24.9 13.0 24 93-116 274-297 (352)
264 cd08209 RLP_DK-MTP-1-P-enolase 44.4 2.4E+02 0.0052 25.4 10.8 64 68-131 277-371 (391)
265 cd07942 DRE_TIM_LeuA Mycobacte 44.2 1.1E+02 0.0023 26.1 7.1 44 6-60 155-204 (284)
266 PRK08649 inosine 5-monophospha 44.1 1.2E+02 0.0025 27.0 7.5 17 10-26 198-214 (368)
267 PRK08883 ribulose-phosphate 3- 44.0 84 0.0018 25.7 6.2 27 5-31 10-38 (220)
268 TIGR01417 PTS_I_fam phosphoeno 43.6 1.4E+02 0.0031 28.0 8.3 28 94-121 510-537 (565)
269 TIGR01769 GGGP geranylgeranylg 43.3 1E+02 0.0023 25.1 6.6 58 8-78 12-78 (205)
270 PRK14114 1-(5-phosphoribosyl)- 43.0 1.3E+02 0.0027 25.0 7.2 132 8-151 31-208 (241)
271 TIGR01769 GGGP geranylgeranylg 42.9 1.3E+02 0.0029 24.4 7.2 43 6-57 133-175 (205)
272 cd03309 CmuC_like CmuC_like. P 42.9 2E+02 0.0043 24.9 8.6 34 11-50 159-193 (321)
273 PRK13384 delta-aminolevulinic 42.8 1.2E+02 0.0027 26.6 7.2 21 6-26 60-80 (322)
274 PLN02826 dihydroorotate dehydr 42.7 1.2E+02 0.0025 27.4 7.4 89 7-114 276-375 (409)
275 TIGR01305 GMP_reduct_1 guanosi 42.6 55 0.0012 29.0 5.1 18 10-27 161-178 (343)
276 PLN02495 oxidoreductase, actin 42.6 1.1E+02 0.0025 27.3 7.2 24 5-28 125-148 (385)
277 cd07948 DRE_TIM_HCS Saccharomy 42.5 31 0.00066 29.0 3.5 46 12-60 76-121 (262)
278 cd04741 DHOD_1A_like Dihydroor 42.5 1.6E+02 0.0034 25.0 7.8 24 5-28 169-194 (294)
279 PRK05742 nicotinate-nucleotide 42.4 49 0.0011 28.3 4.7 43 68-111 208-263 (277)
280 PRK11572 copper homeostasis pr 42.2 98 0.0021 26.1 6.4 52 68-120 85-158 (248)
281 TIGR00190 thiC thiamine biosyn 42.1 1.7E+02 0.0038 26.6 8.2 73 7-100 243-341 (423)
282 TIGR01418 PEP_synth phosphoeno 42.0 1.4E+02 0.003 29.2 8.2 98 46-149 609-755 (782)
283 PRK04208 rbcL ribulose bisopho 41.9 2.9E+02 0.0062 25.6 11.3 39 94-132 380-425 (468)
284 PRK09283 delta-aminolevulinic 41.7 77 0.0017 27.9 5.8 20 68-87 240-260 (323)
285 KOG2949 Ketopantoate hydroxyme 41.6 1.1E+02 0.0023 26.1 6.4 74 13-87 51-150 (306)
286 COG0167 PyrD Dihydroorotate de 41.5 1.1E+02 0.0023 26.7 6.7 67 5-76 107-193 (310)
287 cd00384 ALAD_PBGS Porphobilino 41.4 73 0.0016 27.9 5.6 20 68-87 232-252 (314)
288 COG0036 Rpe Pentose-5-phosphat 41.4 86 0.0019 26.1 5.8 27 5-31 14-42 (220)
289 cd07381 MPP_CapA CapA and rela 41.2 57 0.0012 26.3 4.8 16 7-22 94-109 (239)
290 COG1646 Predicted phosphate-bi 40.9 81 0.0018 26.6 5.6 59 7-78 28-95 (240)
291 PRK08195 4-hyroxy-2-oxovalerat 40.7 2.5E+02 0.0053 24.5 10.1 48 5-54 23-72 (337)
292 PRK07428 nicotinate-nucleotide 40.7 53 0.0012 28.2 4.7 44 68-112 215-274 (288)
293 cd02072 Glm_B12_BD B12 binding 40.7 71 0.0015 24.2 4.9 23 96-118 102-124 (128)
294 cd02811 IDI-2_FMN Isopentenyl- 40.7 2.4E+02 0.0052 24.3 11.1 26 93-118 268-293 (326)
295 cd04824 eu_ALAD_PBGS_cysteine_ 40.6 92 0.002 27.3 6.1 20 68-87 237-257 (320)
296 TIGR00735 hisF imidazoleglycer 40.2 2.1E+02 0.0045 23.5 8.6 78 8-114 31-108 (254)
297 COG0167 PyrD Dihydroorotate de 40.1 1.1E+02 0.0023 26.7 6.5 107 5-125 171-293 (310)
298 PRK09283 delta-aminolevulinic 39.8 1.1E+02 0.0024 26.9 6.4 21 6-26 58-78 (323)
299 PRK03739 2-isopropylmalate syn 39.5 97 0.0021 29.0 6.5 45 5-60 183-233 (552)
300 PRK13982 bifunctional SbtC-lik 39.2 1.5E+02 0.0032 27.5 7.5 58 8-67 198-261 (475)
301 cd03332 LMO_FMN L-Lactate 2-mo 39.1 1E+02 0.0023 27.5 6.4 18 11-28 265-282 (383)
302 PF00290 Trp_syntA: Tryptophan 38.9 84 0.0018 26.6 5.5 147 1-150 18-217 (259)
303 PLN02493 probable peroxisomal 38.4 1E+02 0.0023 27.4 6.3 19 10-28 235-253 (367)
304 PRK12290 thiE thiamine-phospha 38.3 1.7E+02 0.0036 26.9 7.6 87 11-111 221-329 (437)
305 TIGR02660 nifV_homocitr homoci 38.2 39 0.00084 29.7 3.5 75 10-87 75-176 (365)
306 TIGR02351 thiH thiazole biosyn 38.1 1.9E+02 0.0041 25.3 7.9 92 5-106 104-218 (366)
307 PRK15447 putative protease; Pr 38.0 1.6E+02 0.0034 25.2 7.2 44 8-58 16-59 (301)
308 PRK13398 3-deoxy-7-phosphohept 37.8 1.1E+02 0.0024 25.8 6.1 52 7-59 211-262 (266)
309 PRK07695 transcriptional regul 37.8 2E+02 0.0043 22.6 8.6 89 8-110 16-123 (201)
310 COG0113 HemB Delta-aminolevuli 37.7 18 0.00039 31.6 1.4 20 68-87 245-265 (330)
311 cd00384 ALAD_PBGS Porphobilino 37.7 1.4E+02 0.0031 26.1 6.8 21 6-26 50-70 (314)
312 COG0036 Rpe Pentose-5-phosphat 37.6 34 0.00074 28.4 2.9 52 47-115 151-203 (220)
313 PRK09517 multifunctional thiam 37.6 2.2E+02 0.0049 27.6 8.9 92 8-111 20-137 (755)
314 TIGR00433 bioB biotin syntheta 37.6 1.7E+02 0.0038 24.1 7.3 91 6-105 64-174 (296)
315 TIGR01036 pyrD_sub2 dihydrooro 37.4 93 0.002 27.1 5.8 23 8-30 225-247 (335)
316 cd04724 Tryptophan_synthase_al 37.4 1.4E+02 0.003 24.5 6.6 21 9-29 93-113 (242)
317 COG3010 NanE Putative N-acetyl 37.2 71 0.0015 26.6 4.7 88 35-132 21-128 (229)
318 cd04742 NPD_FabD 2-Nitropropan 37.1 1.1E+02 0.0025 27.7 6.4 100 11-117 153-302 (418)
319 PRK07709 fructose-bisphosphate 37.0 2.7E+02 0.0058 23.9 10.4 31 95-125 219-249 (285)
320 PRK07107 inosine 5-monophospha 37.0 1.2E+02 0.0026 28.1 6.6 21 7-27 241-261 (502)
321 PRK09427 bifunctional indole-3 37.0 53 0.0011 30.0 4.3 69 7-87 70-151 (454)
322 TIGR02990 ectoine_eutA ectoine 36.9 66 0.0014 26.7 4.6 42 44-94 165-211 (239)
323 PF13541 ChlI: Subunit ChlI of 36.6 82 0.0018 23.5 4.6 67 44-110 20-119 (121)
324 cd04823 ALAD_PBGS_aspartate_ri 36.1 1.3E+02 0.0028 26.5 6.3 20 68-87 237-257 (320)
325 PRK06843 inosine 5-monophospha 36.1 1.2E+02 0.0025 27.5 6.3 23 8-31 153-175 (404)
326 PF00834 Ribul_P_3_epim: Ribul 36.0 25 0.00053 28.5 1.8 83 45-135 13-109 (201)
327 PRK13384 delta-aminolevulinic 35.9 1.1E+02 0.0023 26.9 5.8 20 68-87 241-261 (322)
328 PF01645 Glu_synthase: Conserv 35.1 43 0.00094 29.8 3.3 38 41-78 182-236 (368)
329 COG2185 Sbm Methylmalonyl-CoA 34.9 1.8E+02 0.004 22.5 6.4 10 68-77 114-123 (143)
330 PRK11858 aksA trans-homoaconit 34.8 51 0.0011 29.1 3.8 75 10-87 78-179 (378)
331 cd04732 HisA HisA. Phosphorib 34.7 1E+02 0.0023 24.5 5.3 93 7-110 29-167 (234)
332 PRK00208 thiG thiazole synthas 34.0 1.5E+02 0.0032 25.2 6.2 75 11-114 135-209 (250)
333 TIGR02129 hisA_euk phosphoribo 34.0 1.4E+02 0.0029 25.3 6.0 70 10-115 41-110 (253)
334 PLN02495 oxidoreductase, actin 33.9 1.3E+02 0.0029 26.9 6.3 26 6-31 193-218 (385)
335 TIGR00126 deoC deoxyribose-pho 33.9 2.6E+02 0.0056 22.8 7.9 48 6-61 69-116 (211)
336 cd04729 NanE N-acetylmannosami 33.6 2.4E+02 0.0053 22.4 7.5 94 11-115 83-212 (219)
337 PF09587 PGA_cap: Bacterial ca 33.4 45 0.00097 27.3 3.0 84 45-132 22-106 (250)
338 COG1856 Uncharacterized homolo 33.3 3E+02 0.0066 23.4 8.4 84 12-106 47-153 (275)
339 PRK09722 allulose-6-phosphate 33.2 1.7E+02 0.0037 24.2 6.4 26 5-31 13-40 (229)
340 PF03437 BtpA: BtpA family; I 33.1 1.4E+02 0.0031 25.1 6.0 24 7-30 29-52 (254)
341 COG1184 GCD2 Translation initi 33.0 69 0.0015 27.9 4.1 43 10-77 160-202 (301)
342 TIGR01303 IMP_DH_rel_1 IMP deh 32.9 1.4E+02 0.003 27.5 6.4 23 7-30 224-246 (475)
343 TIGR01858 tag_bisphos_ald clas 32.9 3.1E+02 0.0068 23.4 10.3 32 95-126 216-247 (282)
344 KOG0538 Glycolate oxidase [Ene 32.9 79 0.0017 27.9 4.5 17 12-28 236-252 (363)
345 PRK06256 biotin synthase; Vali 32.7 2.1E+02 0.0045 24.4 7.2 93 5-107 92-205 (336)
346 cd02809 alpha_hydroxyacid_oxid 32.6 1.1E+02 0.0025 25.8 5.4 18 11-28 184-201 (299)
347 PRK09549 mtnW 2,3-diketo-5-met 32.5 3.8E+02 0.0082 24.3 10.5 64 68-131 287-382 (407)
348 PRK13352 thiamine biosynthesis 32.4 3E+02 0.0066 25.2 8.2 48 7-67 246-293 (431)
349 cd04726 KGPDC_HPS 3-Keto-L-gul 32.3 2.3E+02 0.005 21.9 6.9 22 93-114 170-191 (202)
350 PRK13585 1-(5-phosphoribosyl)- 32.2 1E+02 0.0022 24.9 4.9 69 8-87 33-118 (241)
351 cd02930 DCR_FMN 2,4-dienoyl-Co 31.9 1.8E+02 0.0039 25.2 6.7 91 8-108 138-243 (353)
352 cd04735 OYE_like_4_FMN Old yel 31.1 3.5E+02 0.0077 23.4 8.9 20 8-27 145-164 (353)
353 COG2301 CitE Citrate lyase bet 31.1 1.2E+02 0.0027 26.0 5.4 58 19-87 21-98 (283)
354 TIGR00007 phosphoribosylformim 31.0 2.7E+02 0.0059 22.1 10.4 23 8-30 29-51 (230)
355 cd00945 Aldolase_Class_I Class 30.6 73 0.0016 24.1 3.7 26 2-27 8-33 (201)
356 PF00682 HMGL-like: HMGL-like 30.6 31 0.00067 27.8 1.6 52 6-60 66-117 (237)
357 COG0106 HisA Phosphoribosylfor 30.5 32 0.0007 28.9 1.7 21 93-113 88-108 (241)
358 PLN02389 biotin synthase 30.5 2.6E+02 0.0057 24.8 7.5 37 41-77 277-330 (379)
359 cd00739 DHPS DHPS subgroup of 30.5 3.2E+02 0.007 22.8 12.1 111 5-132 22-164 (257)
360 PRK07094 biotin synthase; Prov 30.1 2.8E+02 0.0061 23.4 7.5 57 5-62 193-249 (323)
361 PLN02274 inosine-5'-monophosph 30.1 1.7E+02 0.0036 27.2 6.4 21 8-29 248-268 (505)
362 cd04723 HisA_HisF Phosphoribos 30.0 3E+02 0.0066 22.3 8.6 88 8-127 36-123 (233)
363 TIGR00433 bioB biotin syntheta 30.0 2.8E+02 0.0061 22.9 7.4 14 99-112 263-276 (296)
364 TIGR01859 fruc_bis_ald_ fructo 29.9 3.5E+02 0.0075 23.0 10.4 32 94-125 215-246 (282)
365 COG3473 Maleate cis-trans isom 29.8 45 0.00097 27.9 2.4 25 68-92 178-207 (238)
366 PRK11197 lldD L-lactate dehydr 29.7 1.9E+02 0.0042 25.8 6.6 77 11-116 257-336 (381)
367 CHL00162 thiG thiamin biosynth 29.5 1.8E+02 0.0039 24.9 5.9 29 12-46 150-178 (267)
368 PRK14024 phosphoribosyl isomer 29.1 2.8E+02 0.0061 22.6 7.1 92 8-111 33-168 (241)
369 PF00490 ALAD: Delta-aminolevu 29.1 1E+02 0.0022 27.1 4.6 21 6-26 56-76 (324)
370 TIGR02090 LEU1_arch isopropylm 29.0 68 0.0015 28.2 3.6 75 10-87 74-175 (363)
371 cd08206 RuBisCO_large_I_II_III 28.9 4.4E+02 0.0096 23.9 10.8 39 94-132 351-396 (414)
372 KOG1154 Gamma-glutamyl kinase 28.9 1.5E+02 0.0032 25.4 5.3 71 7-87 132-207 (285)
373 cd02922 FCB2_FMN Flavocytochro 28.8 2.4E+02 0.0051 24.8 6.9 85 10-117 224-308 (344)
374 PRK00719 alkanesulfonate monoo 28.8 61 0.0013 28.5 3.2 25 3-27 304-328 (378)
375 COG2877 KdsA 3-deoxy-D-manno-o 28.7 2.2E+02 0.0048 24.3 6.3 47 7-54 216-262 (279)
376 PRK13125 trpA tryptophan synth 28.7 3.3E+02 0.0071 22.3 10.0 23 7-29 88-110 (244)
377 TIGR00078 nadC nicotinate-nucl 28.7 1E+02 0.0022 26.0 4.4 41 68-109 197-250 (265)
378 PRK08649 inosine 5-monophospha 28.7 1.5E+02 0.0032 26.4 5.6 21 7-27 141-161 (368)
379 COG2100 Predicted Fe-S oxidore 28.4 1.6E+02 0.0035 26.4 5.7 72 10-87 204-276 (414)
380 PRK09426 methylmalonyl-CoA mut 28.0 2.2E+02 0.0049 27.6 7.1 79 21-126 608-709 (714)
381 TIGR02151 IPP_isom_2 isopenten 27.9 4E+02 0.0086 23.0 11.1 24 94-117 268-291 (333)
382 PRK00748 1-(5-phosphoribosyl)- 27.8 1.8E+02 0.0039 23.1 5.7 23 8-30 31-53 (233)
383 TIGR00510 lipA lipoate synthas 27.8 1.2E+02 0.0027 26.0 4.9 90 10-112 156-245 (302)
384 PRK00957 methionine synthase; 27.2 2.2E+02 0.0048 23.9 6.3 43 9-59 146-188 (305)
385 cd04728 ThiG Thiazole synthase 27.2 3.9E+02 0.0084 22.6 9.2 47 68-114 143-209 (248)
386 cd08212 RuBisCO_large_I Ribulo 27.0 5E+02 0.011 23.9 9.7 36 94-129 364-406 (450)
387 PF03932 CutC: CutC family; I 27.0 47 0.001 27.1 2.0 45 68-112 84-150 (201)
388 PF01070 FMN_dh: FMN-dependent 26.9 86 0.0019 27.6 3.8 115 11-162 237-354 (356)
389 cd08148 RuBisCO_large Ribulose 26.7 3.1E+02 0.0068 24.4 7.3 42 68-109 279-345 (366)
390 PLN02444 HMP-P synthase 26.7 83 0.0018 29.9 3.8 72 41-121 231-332 (642)
391 PRK07807 inosine 5-monophospha 26.6 2.3E+02 0.0049 26.1 6.6 54 7-75 226-295 (479)
392 TIGR01362 KDO8P_synth 3-deoxy- 26.3 2.8E+02 0.0061 23.6 6.6 49 5-54 199-247 (258)
393 cd02809 alpha_hydroxyacid_oxid 26.1 4E+02 0.0086 22.5 12.4 101 5-117 127-264 (299)
394 PRK05198 2-dehydro-3-deoxyphos 26.1 2.8E+02 0.0061 23.7 6.6 52 6-58 208-259 (264)
395 PRK14847 hypothetical protein; 26.0 3.1E+02 0.0066 24.2 7.0 28 21-59 207-234 (333)
396 cd07947 DRE_TIM_Re_CS Clostrid 26.0 2.2E+02 0.0048 24.1 6.1 18 14-31 156-174 (279)
397 COG0826 Collagenase and relate 26.0 4.6E+02 0.0099 23.1 10.0 105 10-123 16-158 (347)
398 TIGR01302 IMP_dehydrog inosine 25.6 2.6E+02 0.0057 25.2 6.8 19 8-26 224-242 (450)
399 cd03308 CmuA_CmuC_like CmuA_Cm 25.6 4.5E+02 0.0098 23.0 8.2 34 9-50 216-250 (378)
400 PLN02979 glycolate oxidase 25.5 2.4E+02 0.0051 25.3 6.3 19 10-28 234-252 (366)
401 PRK09485 mmuM homocysteine met 25.4 1.1E+02 0.0024 26.0 4.2 20 68-87 152-171 (304)
402 smart00351 PAX Paired Box doma 25.4 2.4E+02 0.0052 20.7 5.5 49 5-65 46-94 (125)
403 PTZ00314 inosine-5'-monophosph 25.2 2.5E+02 0.0054 25.9 6.6 20 8-27 241-260 (495)
404 PRK00208 thiG thiazole synthas 24.7 4.3E+02 0.0094 22.4 8.1 29 32-60 60-89 (250)
405 cd00959 DeoC 2-deoxyribose-5-p 24.6 3.6E+02 0.0077 21.3 7.4 47 7-61 69-115 (203)
406 smart00876 BATS Biotin and Thi 24.6 2E+02 0.0044 20.0 4.8 24 42-65 18-41 (94)
407 PRK07107 inosine 5-monophospha 24.6 3E+02 0.0066 25.4 7.1 21 10-32 295-315 (502)
408 PF13565 HTH_32: Homeodomain-l 24.5 1.7E+02 0.0036 19.0 4.1 44 9-59 2-45 (77)
409 cd00945 Aldolase_Class_I Class 24.3 2.3E+02 0.0051 21.3 5.5 47 6-60 64-110 (201)
410 KOG2335 tRNA-dihydrouridine sy 24.3 2.2E+02 0.0048 25.4 5.8 72 5-78 84-177 (358)
411 PF00478 IMPDH: IMP dehydrogen 24.2 1.6E+02 0.0036 26.1 5.1 55 8-75 108-176 (352)
412 COG4531 ZnuA ABC-type Zn2+ tra 24.1 3.9E+02 0.0085 23.3 7.1 59 68-128 257-316 (318)
413 TIGR01361 DAHP_synth_Bsub phos 24.0 2.4E+02 0.0052 23.6 5.9 49 9-58 211-259 (260)
414 PRK09284 thiamine biosynthesis 24.0 88 0.0019 29.6 3.4 73 41-122 226-328 (607)
415 TIGR01768 GGGP-family geranylg 23.9 2.3E+02 0.0049 23.5 5.6 57 8-78 15-80 (223)
416 PLN02535 glycolate oxidase 23.7 2.4E+02 0.0052 25.1 6.0 19 97-115 295-313 (364)
417 PRK06267 hypothetical protein; 23.6 3.5E+02 0.0077 23.5 7.0 17 43-59 217-233 (350)
418 PF09370 TIM-br_sig_trns: TIM- 23.5 1.5E+02 0.0033 25.3 4.6 67 13-87 163-233 (268)
419 COG0635 HemN Coproporphyrinoge 23.5 39 0.00084 30.4 1.0 22 94-115 139-160 (416)
420 COG2022 ThiG Uncharacterized e 23.4 2.5E+02 0.0055 23.8 5.7 14 12-25 143-156 (262)
421 PRK13587 1-(5-phosphoribosyl)- 23.3 3.2E+02 0.0069 22.4 6.4 132 8-150 32-211 (234)
422 PRK06843 inosine 5-monophospha 23.3 3.2E+02 0.0068 24.7 6.8 17 10-26 205-221 (404)
423 TIGR00190 thiC thiamine biosyn 23.2 3.5E+02 0.0075 24.7 6.9 72 41-121 71-172 (423)
424 PRK02083 imidazole glycerol ph 23.2 2.8E+02 0.0061 22.6 6.1 69 8-87 31-116 (253)
425 PRK12738 kbaY tagatose-bisphos 23.1 4.8E+02 0.01 22.3 10.2 33 94-126 217-249 (286)
426 PRK06464 phosphoenolpyruvate s 23.0 3.7E+02 0.008 26.4 7.6 105 43-153 611-766 (795)
427 COG0685 MetF 5,10-methylenetet 22.5 4.6E+02 0.01 22.3 7.4 48 5-54 90-137 (291)
428 cd03681 MM_CoA_mutase_MeaA Coe 22.3 2.1E+02 0.0046 26.0 5.4 27 1-27 8-34 (407)
429 PRK07094 biotin synthase; Prov 22.1 3.9E+02 0.0084 22.5 6.9 44 5-58 71-114 (323)
430 PRK08610 fructose-bisphosphate 22.0 5.1E+02 0.011 22.2 10.1 31 95-125 219-249 (286)
431 cd07381 MPP_CapA CapA and rela 21.9 84 0.0018 25.3 2.7 82 45-131 23-107 (239)
432 COG0413 PanB Ketopantoate hydr 21.7 2.2E+02 0.0048 24.4 5.1 68 5-78 91-183 (268)
433 PRK00042 tpiA triosephosphate 21.6 88 0.0019 26.2 2.7 43 90-132 74-120 (250)
434 PRK14719 bifunctional RNAse/5- 21.5 1.4E+02 0.003 26.5 4.1 38 73-110 27-74 (360)
435 cd07938 DRE_TIM_HMGL 3-hydroxy 21.4 1.3E+02 0.0029 25.2 3.8 47 10-59 76-122 (274)
436 PRK09195 gatY tagatose-bisphos 21.4 5.2E+02 0.011 22.1 10.3 31 95-125 218-248 (284)
437 PRK08673 3-deoxy-7-phosphohept 21.4 2.7E+02 0.0058 24.5 5.8 50 8-58 278-327 (335)
438 cd04733 OYE_like_2_FMN Old yel 21.3 4.5E+02 0.0097 22.6 7.2 58 8-67 150-219 (338)
439 PRK09389 (R)-citramalate synth 21.0 1.3E+02 0.0028 27.7 3.9 115 11-128 77-239 (488)
440 cd08208 RLP_Photo Ribulose bis 20.9 6.4E+02 0.014 23.0 9.4 62 68-129 310-404 (424)
441 cd08213 RuBisCO_large_III Ribu 20.7 5.2E+02 0.011 23.4 7.6 38 94-131 349-393 (412)
442 PRK05926 hypothetical protein; 20.7 1.7E+02 0.0037 25.9 4.5 60 9-83 168-237 (370)
443 PRK12457 2-dehydro-3-deoxyphos 20.7 4.3E+02 0.0094 22.8 6.7 53 6-59 216-271 (281)
444 PRK08445 hypothetical protein; 20.6 1.4E+02 0.0031 26.1 3.9 41 10-59 144-194 (348)
445 PF03060 NMO: Nitronate monoox 20.6 2.1E+02 0.0045 24.6 5.0 55 13-75 149-218 (330)
446 PLN03033 2-dehydro-3-deoxyphos 20.6 4.2E+02 0.0092 23.0 6.7 54 5-59 218-274 (290)
447 PRK14567 triosephosphate isome 20.5 97 0.0021 26.1 2.8 26 90-115 73-98 (253)
448 PRK08072 nicotinate-nucleotide 20.5 2.2E+02 0.0048 24.2 5.0 42 68-110 207-261 (277)
449 TIGR00282 metallophosphoestera 20.3 2.1E+02 0.0046 24.2 4.8 43 62-115 30-72 (266)
450 PF04131 NanE: Putative N-acet 20.3 3.1E+02 0.0067 22.3 5.5 91 9-114 53-178 (192)
451 COG2804 PulE Type II secretory 20.3 4E+02 0.0086 24.9 6.8 102 1-112 267-385 (500)
No 1
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.4e-46 Score=313.72 Aligned_cols=164 Identities=38% Similarity=0.514 Sum_probs=157.6
Q ss_pred CCCCChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE-------------
Q 037554 1 TGGGNALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL------------- 67 (173)
Q Consensus 1 tGyG~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I------------- 67 (173)
||||++.|++|||++++++|++|||||||++||||||++||+|+|++||+.||+||++++.++||||
T Consensus 87 tGfG~~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld 166 (289)
T COG2513 87 TGFGEALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLD 166 (289)
T ss_pred CCCCcHHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -----------ecCCcccccCCCCHHHHhhh----------h----c-CCCCCHHHHHhCCccEEEechHHHHHHHHHHH
Q 037554 68 -----------ARADASFVEAPRNDNEANWV----------W----G-HTLHTPEELKAMGFHLTVHPLTALYASARALV 121 (173)
Q Consensus 68 -----------AGAD~ifv~g~~~~e~i~~i----------~----g-~p~~~~~eL~~lGv~~v~~~~~~~~aa~~a~~ 121 (173)
||||+||+|+++|.+++++| | + +|++|.++|+++||++||||++.+|++++++.
T Consensus 167 ~AI~Ra~AY~eAGAD~if~~al~~~e~i~~f~~av~~pl~~N~t~~g~tp~~~~~~L~~~Gv~~V~~~~~~~raa~~a~~ 246 (289)
T COG2513 167 DAIERAQAYVEAGADAIFPEALTDLEEIRAFAEAVPVPLPANITEFGKTPLLTVAELAELGVKRVSYGLTAFRAALKAAE 246 (289)
T ss_pred HHHHHHHHHHHcCCcEEccccCCCHHHHHHHHHhcCCCeeeEeeccCCCCCcCHHHHHhcCceEEEECcHHHHHHHHHHH
Confidence 99999999999999999999 2 3 78899999999999999999999999999999
Q ss_pred HHHHHHHHcCCcccccccCCCHHHHHHhcChhhHHHHHhcccc
Q 037554 122 DVLKTLKESGTTRDHLEKMGTFEEFNQLVNLESWFEIEGRYSN 164 (173)
Q Consensus 122 ~~~~~l~~~g~~~~~~~~~~~~~e~~~l~g~~~~~~~~~~y~~ 164 (173)
+.++.|+++|+.....+.|.+.+++++++++++|.+.+.+|.+
T Consensus 247 ~~~~~i~~~gt~~~~~d~m~~r~~l~~~~~y~~~~~~~~~~~~ 289 (289)
T COG2513 247 QAAREIRREGTQANVLDKMQTRKELYDLINYYDYEAKDDELFP 289 (289)
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHHHhhcHHHHHHHHHhhcC
Confidence 9999999999998888888899999999999999999988753
No 2
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=100.00 E-value=9.9e-46 Score=313.49 Aligned_cols=164 Identities=38% Similarity=0.567 Sum_probs=156.3
Q ss_pred CCCCChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE-------------
Q 037554 1 TGGGNALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL------------- 67 (173)
Q Consensus 1 tGyG~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I------------- 67 (173)
+|||++.||+|||++|+++||+|||||||++||||||+.+++|+|+++|++||+||++++.++||||
T Consensus 82 ~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~d 161 (285)
T TIGR02317 82 TGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLD 161 (285)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -----------ecCCcccccCCCCHHHHhhh----------h----c-CCCCCHHHHHhCCccEEEechHHHHHHHHHHH
Q 037554 68 -----------ARADASFVEAPRNDNEANWV----------W----G-HTLHTPEELKAMGFHLTVHPLTALYASARALV 121 (173)
Q Consensus 68 -----------AGAD~ifv~g~~~~e~i~~i----------~----g-~p~~~~~eL~~lGv~~v~~~~~~~~aa~~a~~ 121 (173)
||||+||+|++++.++++++ + + +|.++++||++|||++||||++++++++++|+
T Consensus 162 eAI~Ra~ay~~AGAD~vfi~g~~~~e~i~~~~~~i~~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~~~~~~~~aa~~a~~ 241 (285)
T TIGR02317 162 AAIERAKAYVEAGADMIFPEALTSLEEFRQFAKAVKVPLLANMTEFGKTPLFTADELREAGYKMVIYPVTAFRAMNKAAE 241 (285)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEchHHHHHHHHHHH
Confidence 99999999999999999998 1 2 46789999999999999999999999999999
Q ss_pred HHHHHHHHcCCcccccccCCCHHHHHHhcChhhHHHHHhcccc
Q 037554 122 DVLKTLKESGTTRDHLEKMGTFEEFNQLVNLESWFEIEGRYSN 164 (173)
Q Consensus 122 ~~~~~l~~~g~~~~~~~~~~~~~e~~~l~g~~~~~~~~~~y~~ 164 (173)
+.+..++++|++....+.+.+++|+++++|+++|.++|++|..
T Consensus 242 ~~~~~l~~~g~~~~~~~~~~~~~e~~~~~g~~~~~~~~~~~~~ 284 (285)
T TIGR02317 242 AVYNEIKEHGTQKGSLDDMQTRKELYELIGYYDYEKKDDSIFK 284 (285)
T ss_pred HHHHHHHHcCCcccccccCCCHHHHHHHcChHHHHHHHHHHhc
Confidence 9999999999987777778899999999999999999999864
No 3
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=100.00 E-value=4.8e-45 Score=310.14 Aligned_cols=165 Identities=35% Similarity=0.509 Sum_probs=155.4
Q ss_pred CCCCChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE-------------
Q 037554 1 TGGGNALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL------------- 67 (173)
Q Consensus 1 tGyG~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I------------- 67 (173)
+|||++.|++|||++|+++||+|||||||++||||||..+++|+|++||++||+||++++.++||||
T Consensus 87 ~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~d 166 (292)
T PRK11320 87 TGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLD 166 (292)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHH
Confidence 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -----------ecCCcccccCCCCHHHHhhh----------h----c-CCCCCHHHHHhCCccEEEechHHHHHHHHHHH
Q 037554 68 -----------ARADASFVEAPRNDNEANWV----------W----G-HTLHTPEELKAMGFHLTVHPLTALYASARALV 121 (173)
Q Consensus 68 -----------AGAD~ifv~g~~~~e~i~~i----------~----g-~p~~~~~eL~~lGv~~v~~~~~~~~aa~~a~~ 121 (173)
||||+||+|++++.++++++ + + +|.+++++|++|||++||||++++++++++|.
T Consensus 167 eAI~Ra~aY~eAGAD~ifi~~~~~~~~i~~~~~~~~~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v~~~~~~~~aa~~a~~ 246 (292)
T PRK11320 167 AAIERAQAYVEAGADMIFPEAMTELEMYRRFADAVKVPILANITEFGATPLFTTEELASAGVAMVLYPLSAFRAMNKAAE 246 (292)
T ss_pred HHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHhcCCCEEEEeccCCCCCCCCHHHHHHcCCcEEEEChHHHHHHHHHHH
Confidence 99999999999999999988 1 2 46789999999999999999999999999999
Q ss_pred HHHHHHHHcCCcccccccCCCHHHHHHhcChhhHH-HHHhcccch
Q 037554 122 DVLKTLKESGTTRDHLEKMGTFEEFNQLVNLESWF-EIEGRYSNF 165 (173)
Q Consensus 122 ~~~~~l~~~g~~~~~~~~~~~~~e~~~l~g~~~~~-~~~~~y~~~ 165 (173)
+.++.++++|++....+.+.+++++++++|+++|. ++|++|...
T Consensus 247 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 291 (292)
T PRK11320 247 NVYEAIRRDGTQKAVVDTMQTREELYEYLGYHAYEQKLDALFAQK 291 (292)
T ss_pred HHHHHHHHcCCcccchhccCCHHHHHHhcCcHHHHHHHHHHhccC
Confidence 99999999999877777788999999999999998 588888653
No 4
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=100.00 E-value=8.5e-45 Score=308.80 Aligned_cols=165 Identities=36% Similarity=0.581 Sum_probs=155.0
Q ss_pred CCCCChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE-------------
Q 037554 1 TGGGNALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL------------- 67 (173)
Q Consensus 1 tGyG~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I------------- 67 (173)
+|||++.|++|||++|+++||+|||||||++||||||+.+++|+|.+||++||+||++++.++||||
T Consensus 86 tGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~d 165 (294)
T TIGR02319 86 AGYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLD 165 (294)
T ss_pred CCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHH
Confidence 7999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred -----------ecCCcccccCCCCHHHHhhh----------h----c-CCCCCHHHHHhCCccEEEechHHHHHHHHHHH
Q 037554 68 -----------ARADASFVEAPRNDNEANWV----------W----G-HTLHTPEELKAMGFHLTVHPLTALYASARALV 121 (173)
Q Consensus 68 -----------AGAD~ifv~g~~~~e~i~~i----------~----g-~p~~~~~eL~~lGv~~v~~~~~~~~aa~~a~~ 121 (173)
||||+||+|+++|.++++++ | + +|.+++++|++|||++||||++++++++++|+
T Consensus 166 eaI~Ra~aY~eAGAD~ifi~~~~~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~~~~~aa~~a~~ 245 (294)
T TIGR02319 166 EAIRRSREYVAAGADCIFLEAMLDVEEMKRVRDEIDAPLLANMVEGGKTPWLTTKELESIGYNLAIYPLSGWMAAASVLR 245 (294)
T ss_pred HHHHHHHHHHHhCCCEEEecCCCCHHHHHHHHHhcCCCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcHHHHHHHHHHHH
Confidence 99999999999999999999 1 2 56789999999999999999999999999999
Q ss_pred HHHHHHHHcCCcccccccC---CCHHHHHHhcChhhHHHHHhcccch
Q 037554 122 DVLKTLKESGTTRDHLEKM---GTFEEFNQLVNLESWFEIEGRYSNF 165 (173)
Q Consensus 122 ~~~~~l~~~g~~~~~~~~~---~~~~e~~~l~g~~~~~~~~~~y~~~ 165 (173)
+.+++|+++|+.....+.+ .+++++++++|+++|.++|++|.+.
T Consensus 246 ~~~~~l~~~G~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~ 292 (294)
T TIGR02319 246 KLFTELREAGTTQKFWDDMGLKMSFAELFEVFEYSKISELEARFVRD 292 (294)
T ss_pred HHHHHHHHcCCcccccccccccCCHHHHHHHhChHHHHHHHHhhccc
Confidence 9999999999876555554 7999999999999999999999864
No 5
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=100.00 E-value=7.7e-43 Score=296.52 Aligned_cols=164 Identities=29% Similarity=0.408 Sum_probs=153.0
Q ss_pred CCCCChHHHHHHHHHHHHhCceEEEeccCCCCccCCCC-CC-CcccCHHHHHHHHHHHHHhcCCCCEEE-----------
Q 037554 1 TGGGNALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHM-HG-KQIIPAEEHAAKIASARDAIGDSDFVL----------- 67 (173)
Q Consensus 1 tGyG~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~-~g-~~l~~~ee~~~kI~Aa~~a~~~~d~~I----------- 67 (173)
+|||++.|++|||++|+++||+|||||||++||+|||+ .+ ++|+|++||++||+||++++.++||||
T Consensus 84 ~GyG~~~~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~ 163 (290)
T TIGR02321 84 TGFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGL 163 (290)
T ss_pred CCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccC
Confidence 79999999999999999999999999999999999998 45 689999999999999999999999999
Q ss_pred --------------ecCCcccccC-CCCHHHHhhhh----c----------CCCCCHHHHHhCC-ccEEEechHHHHHHH
Q 037554 68 --------------ARADASFVEA-PRNDNEANWVW----G----------HTLHTPEELKAMG-FHLTVHPLTALYASA 117 (173)
Q Consensus 68 --------------AGAD~ifv~g-~~~~e~i~~i~----g----------~p~~~~~eL~~lG-v~~v~~~~~~~~aa~ 117 (173)
||||+||||+ ++|+++++++. + +|.++.++|++|| |++||||++++++++
T Consensus 164 g~deAI~Ra~aY~eAGAD~ifv~~~~~~~~ei~~~~~~~~~p~pv~~~~~~~p~~~~~~l~~lg~~~~v~~g~~~~~aa~ 243 (290)
T TIGR02321 164 GQQEAVRRGQAYEEAGADAILIHSRQKTPDEILAFVKSWPGKVPLVLVPTAYPQLTEADIAALSKVGIVIYGNHAIRAAV 243 (290)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhcCCCCCeEEecCCCCCCCHHHHHHhcCCcEEEEChHHHHHHH
Confidence 9999999998 49999999991 1 3556889999999 999999999999999
Q ss_pred HHHHHHHHHHHHcCCcccccccCCCHHHHHHhcChhhHHHHHhcccc
Q 037554 118 RALVDVLKTLKESGTTRDHLEKMGTFEEFNQLVNLESWFEIEGRYSN 164 (173)
Q Consensus 118 ~a~~~~~~~l~~~g~~~~~~~~~~~~~e~~~l~g~~~~~~~~~~y~~ 164 (173)
++|+++++.++++|++....+.+.+++|+++++|+++|.++|++|.+
T Consensus 244 ~a~~~~~~~i~~~g~~~~~~~~~~~~~e~~~l~g~~~~~~~e~~~~~ 290 (290)
T TIGR02321 244 GAVREVFARIRRDGGIREVDAALPSVKEIIELQGDERMRAVEARYLK 290 (290)
T ss_pred HHHHHHHHHHHHcCCcccccccCCCHHHHHHHhChHHHHHHHHHhcC
Confidence 99999999999999988888888899999999999999999999974
No 6
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=100.00 E-value=2.6e-37 Score=262.22 Aligned_cols=153 Identities=23% Similarity=0.288 Sum_probs=141.2
Q ss_pred CCCCChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCC---cccCHHHHHHHHHHHHHhcCCCCEEE----------
Q 037554 1 TGGGNALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGK---QIIPAEEHAAKIASARDAIGDSDFVL---------- 67 (173)
Q Consensus 1 tGyG~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~---~l~~~ee~~~kI~Aa~~a~~~~d~~I---------- 67 (173)
+| |++.|+.|+|++|+++||+|||||||++||||||+.++ .++|.+|+++||+|+++++.++||+|
T Consensus 87 ~G-g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~ 165 (285)
T TIGR02320 87 TG-GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILG 165 (285)
T ss_pred CC-CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEeccccccc
Confidence 58 99999999999999999999999999999999999876 79999999999999999988889988
Q ss_pred ---------------ecCCcccccC-CCCHHHHhhhh----c-------------CCCCCHHHHHhCCccEEEechHHHH
Q 037554 68 ---------------ARADASFVEA-PRNDNEANWVW----G-------------HTLHTPEELKAMGFHLTVHPLTALY 114 (173)
Q Consensus 68 ---------------AGAD~ifv~g-~~~~e~i~~i~----g-------------~p~~~~~eL~~lGv~~v~~~~~~~~ 114 (173)
||||+||+++ +.|.++++++. + .|.++++||.++||+|||||+++++
T Consensus 166 ~~~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~~ 245 (285)
T TIGR02320 166 KGMEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLVIVPTSYYTTPTDEFRDAGISVVIYANHLLR 245 (285)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHHH
Confidence 9999999996 68999999881 1 1346899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCcccccccCCCHHHHHHhcChhh
Q 037554 115 ASARALVDVLKTLKESGTTRDHLEKMGTFEEFNQLVNLES 154 (173)
Q Consensus 115 aa~~a~~~~~~~l~~~g~~~~~~~~~~~~~e~~~l~g~~~ 154 (173)
+++++|++++++++++|++....+.+.+++|+++++|+++
T Consensus 246 aa~~a~~~~~~~~~~~g~~~~~~~~~~~~~e~~~~~~~~~ 285 (285)
T TIGR02320 246 AAYAAMQQVAERILEHGRLVEVEDKCAPIKEIFRLIPGTE 285 (285)
T ss_pred HHHHHHHHHHHHHHHcCCccccccccCCHHHHHHhcCCCC
Confidence 9999999999999999998887777889999999999874
No 7
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=100.00 E-value=1.1e-33 Score=234.58 Aligned_cols=123 Identities=40% Similarity=0.551 Sum_probs=109.3
Q ss_pred CCCCC-hHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE------------
Q 037554 1 TGGGN-ALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL------------ 67 (173)
Q Consensus 1 tGyG~-~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I------------ 67 (173)
||||+ +.|+.|||++|+++||+||||||| |||| .+++++|++||++||+||++++.+++|||
T Consensus 78 ~GyG~~~~~v~~tv~~~~~aG~agi~IEDq----~~~~-~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~ 152 (238)
T PF13714_consen 78 TGYGNDPENVARTVRELERAGAAGINIEDQ----RCGH-GGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEE 152 (238)
T ss_dssp TTSSSSHHHHHHHHHHHHHCT-SEEEEESB----STTT-STT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHH
T ss_pred cccCchhHHHHHHHHHHHHcCCcEEEeecc----ccCC-CCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCC
Confidence 79998 999999999999999999999999 8998 88999999999999999999999999999
Q ss_pred --------------ecCCcccccCCCCHHHHhhhh---c-------CC-CCCHHHHHhCCccEEEechHHHHHHHHHHHH
Q 037554 68 --------------ARADASFVEAPRNDNEANWVW---G-------HT-LHTPEELKAMGFHLTVHPLTALYASARALVD 122 (173)
Q Consensus 68 --------------AGAD~ifv~g~~~~e~i~~i~---g-------~p-~~~~~eL~~lGv~~v~~~~~~~~aa~~a~~~ 122 (173)
||||+||+|++++.++++++. + .| .+|++||++|||++||||++++++++++|++
T Consensus 153 ~~deaI~R~~aY~eAGAD~ifi~~~~~~~~i~~~~~~~~~Pl~v~~~~~~~~~~eL~~lGv~~v~~~~~~~~aa~~a~~~ 232 (238)
T PF13714_consen 153 GLDEAIERAKAYAEAGADMIFIPGLQSEEEIERIVKAVDGPLNVNPGPGTLSAEELAELGVKRVSYGNSLLRAAMKAMRD 232 (238)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEETTSSSHHHHHHHHHHHSSEEEEETTSSSS-HHHHHHTTESEEEETSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhcCCCEEEEcCCCCCCHHHHHHCCCcEEEEcHHHHHHHHHHHHH
Confidence 999999999999999999991 1 23 5899999999999999999999999999999
Q ss_pred HHHHHH
Q 037554 123 VLKTLK 128 (173)
Q Consensus 123 ~~~~l~ 128 (173)
++++|+
T Consensus 233 ~~~~il 238 (238)
T PF13714_consen 233 AAEAIL 238 (238)
T ss_dssp HHHHH-
T ss_pred HHHhcC
Confidence 999874
No 8
>PRK15063 isocitrate lyase; Provisional
Probab=99.97 E-value=1.3e-31 Score=236.09 Aligned_cols=135 Identities=30% Similarity=0.421 Sum_probs=123.5
Q ss_pred CCCCChHHHHHHHHHHHHhCceEEEeccCCC-CccCCCCCCCcccCHHHHHHHHHHHHHhcC--CCCEEE----------
Q 037554 1 TGGGNALNVQRTVKDLVAAGAAGCFLEDQSW-PKKCGHMHGKQIIPAEEHAAKIASARDAIG--DSDFVL---------- 67 (173)
Q Consensus 1 tGyG~~~~v~rtv~~~~~aGvagi~iEDq~~-pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~--~~d~~I---------- 67 (173)
+|||++.||+++|++|+++||+|||||||+. ||||||+.||.|+|.+||++||+||+.++. +.+++|
T Consensus 155 tGfGg~~nv~~~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~~~vIiARTDA~aa~ 234 (428)
T PRK15063 155 AGFGGVLNAFELMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMGVPTLVIARTDAEAAD 234 (428)
T ss_pred CCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcCCCeEEEEECCccccc
Confidence 6999999999999999999999999999987 899999999999999999999999999874 456776
Q ss_pred -----------------------------------------ecCCcccccC-CCCHHHHhhhh--------------c-C
Q 037554 68 -----------------------------------------ARADASFVEA-PRNDNEANWVW--------------G-H 90 (173)
Q Consensus 68 -----------------------------------------AGAD~ifv~g-~~~~e~i~~i~--------------g-~ 90 (173)
.|||+||++. ++|.+++++|. + +
T Consensus 235 li~s~~d~rD~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~GAD~iw~Et~~~d~ee~~~fa~~v~~~~P~~~layn~s 314 (428)
T PRK15063 235 LLTSDVDERDRPFITGERTAEGFYRVKAGIEQAIARGLAYAPYADLIWCETSTPDLEEARRFAEAIHAKFPGKLLAYNCS 314 (428)
T ss_pred cccccccccccccccCCCccccccccccCHHHHHHHHHHHhcCCCEEEeCCCCCCHHHHHHHHHhhcccCccceeecCCC
Confidence 5999999994 89999999991 2 5
Q ss_pred CCCC-------------HHHHHhCCccEEEechHHHHHHHHHHHHHHHHHHHcCCccc
Q 037554 91 TLHT-------------PEELKAMGFHLTVHPLTALYASARALVDVLKTLKESGTTRD 135 (173)
Q Consensus 91 p~~~-------------~~eL~~lGv~~v~~~~~~~~aa~~a~~~~~~~l~~~g~~~~ 135 (173)
|.++ .+||.+|||+.++++...+++++.+|.+.++.++++|+...
T Consensus 315 PsfnW~~~~~~~~~~~f~~eL~~~Gy~~~~~~la~~ha~~~a~~~~a~~~~~~Gm~ay 372 (428)
T PRK15063 315 PSFNWKKNLDDATIAKFQRELGAMGYKFQFITLAGFHSLNYSMFDLAHGYAREGMAAY 372 (428)
T ss_pred CCcccccccCHHHHHHHHHHHHHcCceEEEechHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 6777 89999999999999999999999999999999999997643
No 9
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=99.97 E-value=1.3e-30 Score=216.56 Aligned_cols=125 Identities=46% Similarity=0.606 Sum_probs=116.9
Q ss_pred CCCCChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCC-CCEEE------------
Q 037554 1 TGGGNALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGD-SDFVL------------ 67 (173)
Q Consensus 1 tGyG~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~-~d~~I------------ 67 (173)
+|||++.++.++|++++++||+|||||||++||+|||+.++.++|++|+++||+++++++.+ +||+|
T Consensus 78 ~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~ 157 (243)
T cd00377 78 TGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEE 157 (243)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCC
Confidence 59999999999999999999999999999999999999999999999999999999999988 78888
Q ss_pred --------------ecCCcccccCCCCHHHHhhhh----------cCC-C--CCHHHHHhCCccEEEechHHHHHHHHHH
Q 037554 68 --------------ARADASFVEAPRNDNEANWVW----------GHT-L--HTPEELKAMGFHLTVHPLTALYASARAL 120 (173)
Q Consensus 68 --------------AGAD~ifv~g~~~~e~i~~i~----------g~p-~--~~~~eL~~lGv~~v~~~~~~~~aa~~a~ 120 (173)
||||+||++++.+.++++++. .+| . ++.++|++|||++||||++++++++.+|
T Consensus 158 ~~~eai~Ra~ay~~AGAD~v~v~~~~~~~~~~~~~~~~~~Pl~~~~~~~~~~~~~~~l~~lG~~~v~~~~~~~~~a~~a~ 237 (243)
T cd00377 158 GLDEAIERAKAYAEAGADGIFVEGLKDPEEIRAFAEAPDVPLNVNMTPGGNLLTVAELAELGVRRVSYGLALLRAAAKAM 237 (243)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEecCCCCCCCHHHHHHCCCeEEEEChHHHHHHHHHH
Confidence 999999999999999999991 133 2 6999999999999999999999999999
Q ss_pred HHHHH
Q 037554 121 VDVLK 125 (173)
Q Consensus 121 ~~~~~ 125 (173)
++.++
T Consensus 238 ~~~~~ 242 (243)
T cd00377 238 REAAR 242 (243)
T ss_pred HHHHh
Confidence 98875
No 10
>PRK06498 isocitrate lyase; Provisional
Probab=99.89 E-value=2.2e-22 Score=179.13 Aligned_cols=67 Identities=36% Similarity=0.485 Sum_probs=63.4
Q ss_pred CCCCChHHHHHHHHHHHHhCceEEEeccCCC-CccCCCCCCCcccCHHHHHHHHHHHHHhcCC---CCEEE
Q 037554 1 TGGGNALNVQRTVKDLVAAGAAGCFLEDQSW-PKKCGHMHGKQIIPAEEHAAKIASARDAIGD---SDFVL 67 (173)
Q Consensus 1 tGyG~~~~v~rtv~~~~~aGvagi~iEDq~~-pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~---~d~~I 67 (173)
||||+++|++|+|+.|+++||+|||||||++ ||||||+.||.|+|.+||+.||+||+.|+.+ +||+|
T Consensus 187 tGfG~~~nv~r~vk~~ieAGAAgIhIEDQv~~~KkCGHl~GK~lVp~ee~i~KI~AAr~A~d~~G~~D~vI 257 (531)
T PRK06498 187 AGFGNEEATYLLAKKMIEAGACCIQIENQVSDEKQCGHQDGKVTVPHEDFLAKIRAVRYAFLELGVDDGVI 257 (531)
T ss_pred CCCCcHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCCCCEeccHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence 7999999999999999999999999999997 8999999999999999999999999999864 77766
No 11
>TIGR01346 isocit_lyase isocitrate lyase. Isocitrate lyase and malate synthase are the enzymes of the glyoxylate shunt, a pathway associated with the TCA cycle.
Probab=99.85 E-value=1.6e-20 Score=168.83 Aligned_cols=67 Identities=40% Similarity=0.577 Sum_probs=62.7
Q ss_pred CCCCChHHHHHHHHHHHHhCceEEEeccCCC-CccCCCCCCCcccCHHHHHHHHHHHHHhc--CCCCEEE
Q 037554 1 TGGGNALNVQRTVKDLVAAGAAGCFLEDQSW-PKKCGHMHGKQIIPAEEHAAKIASARDAI--GDSDFVL 67 (173)
Q Consensus 1 tGyG~~~~v~rtv~~~~~aGvagi~iEDq~~-pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~--~~~d~~I 67 (173)
+|||++.|+.++|++|+++||+|||||||++ ||+|||+.++.|+|++|+++||+||+.++ .++||||
T Consensus 159 tGyG~~~~v~~~vk~~ieaGAaGI~IEDq~~~~KkcGh~~gk~Lvp~~e~v~RI~AAr~Aad~~g~d~vI 228 (527)
T TIGR01346 159 AGFGGATAVFKLQKAFIERGAAGVHWEDQLSSEKKCGHMAGKVLIPVQEHVNRLVAARLAADIMGVPTLV 228 (527)
T ss_pred CCCCCcHHHHHHHHHHHHcCCeEEEEEcCCCcccccCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 6999999999999999999999999999985 99999999999999999999999999985 3577777
No 12
>KOG1260 consensus Isocitrate lyase [Energy production and conversion]
Probab=99.83 E-value=6.9e-20 Score=161.17 Aligned_cols=134 Identities=39% Similarity=0.577 Sum_probs=116.2
Q ss_pred CCCCChHHHHHHHHHHHHhCceEEEeccCCC-CccCCCCCCCcccCHHHHHHHHHHHHHhcC--CCCEEE----------
Q 037554 1 TGGGNALNVQRTVKDLVAAGAAGCFLEDQSW-PKKCGHMHGKQIIPAEEHAAKIASARDAIG--DSDFVL---------- 67 (173)
Q Consensus 1 tGyG~~~~v~rtv~~~~~aGvagi~iEDq~~-pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~--~~d~~I---------- 67 (173)
+||||+.||.++++.|+++|+||||||||+. .|||||+.|+.|||.+|++.||.|+|.++. +.|++|
T Consensus 157 ~G~G~atnv~k~~K~fIeaGaAGIhleDq~~~~k~cgh~sGr~VVPt~ehv~Rl~a~R~~~Dim~sd~iivARTDs~a~~ 236 (492)
T KOG1260|consen 157 AGFGGATNVFKTVKGFIEAGAAGIHLEDQACGEKKCGHMSGRVVVPTEEHVRRLKAARLAADIMGADTIIVARTDSRAAS 236 (492)
T ss_pred CCCchHHHHHHHHHHHHHcccceeeeehhhcccccccccCCcEEecHHHHHHHHHHHHHHHHHhCCCeEEEEeccchhhh
Confidence 5999999999999999999999999999986 788999999999999999999999998875 577777
Q ss_pred --------------------------------------------------------------------------------
Q 037554 68 -------------------------------------------------------------------------------- 67 (173)
Q Consensus 68 -------------------------------------------------------------------------------- 67 (173)
T Consensus 237 l~tS~iDpRDh~~i~g~~~~~~s~~~emk~~~~~~~~~~k~~~~w~~~~kl~~f~ea~~~e~~~~~~~~~~~ei~~~~i~ 316 (492)
T KOG1260|consen 237 LLTSLIDPRDHAFIGGATLSNDSSLEEMKDFCNVGPLVAKLENMWESGAKLPTFNEAVLEEITYREVKYLASEIGVSEIF 316 (492)
T ss_pred hhhccCCchhhhhhhccccchhhHHHHHHhhcccchhhHHHHHhhhhccccccccHHHHhhhhhhhhhhhHhhhhhhhhh
Confidence
Q ss_pred ------------------------------ec-CCcccccCCC-CHHHHhhh-------------h-c-CCCCC------
Q 037554 68 ------------------------------AR-ADASFVEAPR-NDNEANWV-------------W-G-HTLHT------ 94 (173)
Q Consensus 68 ------------------------------AG-AD~ifv~g~~-~~e~i~~i-------------~-g-~p~~~------ 94 (173)
|. +|++|++... |.+++++| . + +|.++
T Consensus 317 fdw~lpr~keG~y~~~gsa~q~~I~rai~fApy~d~~w~et~~pd~~eakeFsegv~~~~pd~m~ay~~sPsfn~~~a~~ 396 (492)
T KOG1260|consen 317 FDWELPRTKEGRYRFKGSAIQEEIGRAIAFAPYADLIWMETSYPDRQEAKEFSEGVKKQYPDSMLAYNFSPSFNWKKAGF 396 (492)
T ss_pred cccccccccCceecCCCchHHHHHHHHHccCchhhhhhhhcCCCCHHHHHHHHHHhhhcChhhHhhhcCCCCCCcccccC
Confidence 33 8888887764 78888888 0 2 45432
Q ss_pred --------HHHHHhCCccEEEechHHHHHHHHHHHHHHHHHHHcCCcc
Q 037554 95 --------PEELKAMGFHLTVHPLTALYASARALVDVLKTLKESGTTR 134 (173)
Q Consensus 95 --------~~eL~~lGv~~v~~~~~~~~aa~~a~~~~~~~l~~~g~~~ 134 (173)
.++|+++||.....+...+.+-..++.+..+.++++|...
T Consensus 397 ~~~Q~~~f~~~l~~~G~~~q~itla~~~~~~~a~~d~~~~~k~dGi~~ 444 (492)
T KOG1260|consen 397 SDEQLVAFDDDLGKMGFILQVITLAGLHANRNAFVDLSNIFKKDGIKG 444 (492)
T ss_pred CHHHHHhhhhhHhhcCeEEEEeehhHhcccchhHHHHHHHHHhccccc
Confidence 3559999999999999999999999999999999999654
No 13
>PLN02892 isocitrate lyase
Probab=99.82 E-value=2e-19 Score=162.66 Aligned_cols=67 Identities=40% Similarity=0.598 Sum_probs=62.8
Q ss_pred CCCCChHHHHHHHHHHHHhCceEEEeccCC-CCccCCCCCCCcccCHHHHHHHHHHHHHhcC--CCCEEE
Q 037554 1 TGGGNALNVQRTVKDLVAAGAAGCFLEDQS-WPKKCGHMHGKQIIPAEEHAAKIASARDAIG--DSDFVL 67 (173)
Q Consensus 1 tGyG~~~~v~rtv~~~~~aGvagi~iEDq~-~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~--~~d~~I 67 (173)
+|||++.++.++|++|+++||+|||||||+ +||+|||+.++.|+|++++++||+||+.+.. ++||||
T Consensus 178 tGyG~~~~~~~~vk~~ieaGAaGIhIEDQ~~~~KkCGh~~gk~Lvp~~e~v~RI~AAR~aad~~G~d~vI 247 (570)
T PLN02892 178 TGFGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMGGKVLVATSEHINRLVAARLQFDVMGVETVL 247 (570)
T ss_pred CCCCccHHHHHHHHHHHHcCCeEEEEECCCCcccccCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 699999999999999999999999999998 6999999999999999999999999999864 577888
No 14
>COG2224 AceA Isocitrate lyase [Energy production and conversion]
Probab=99.81 E-value=1.9e-19 Score=157.14 Aligned_cols=136 Identities=26% Similarity=0.405 Sum_probs=117.6
Q ss_pred CCCCChHHHHHHHHHHHHhCceEEEeccCCC-CccCCCCCCCcccCHHHHHHHHHHHHHhcC---CCCEEE---------
Q 037554 1 TGGGNALNVQRTVKDLVAAGAAGCFLEDQSW-PKKCGHMHGKQIIPAEEHAAKIASARDAIG---DSDFVL--------- 67 (173)
Q Consensus 1 tGyG~~~~v~rtv~~~~~aGvagi~iEDq~~-pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~---~~d~~I--------- 67 (173)
+|||++.|++...|+++++||+|||||||+. .|||||+.||.|||.+|+++||.|+|-+.. .++++|
T Consensus 161 aGfGg~~~~~~L~K~~IEaGaagiH~EDQ~a~~KkCGH~gGkVlVPt~e~i~rL~AaRla~Dvmgv~tvlvARTDa~aA~ 240 (433)
T COG2224 161 AGFGGPLNAFELMKAMIEAGAAGVHFEDQLASEKKCGHLGGKVLVPTQEAIRRLNAARLAADVMGVPTILVARTDAEAAD 240 (433)
T ss_pred cCCCchHHHHHHHHHHHHhCCceeehhhhcccccccccCCCeEeccHHHHHHHHHHHHHHHHHhCCCceEEEecchhhcc
Confidence 5999999999999999999999999999985 999999999999999999999999998864 467777
Q ss_pred -----------------------------------------ecCCcccccCC-CCHHHHhhh-h-------------c-C
Q 037554 68 -----------------------------------------ARADASFVEAP-RNDNEANWV-W-------------G-H 90 (173)
Q Consensus 68 -----------------------------------------AGAD~ifv~g~-~~~e~i~~i-~-------------g-~ 90 (173)
==||+|+++.- .+.++++++ + + +
T Consensus 241 Lits~~D~~d~~fi~~~Rt~eG~y~~k~Gie~aI~r~lA~ApyaDl~W~ET~~Pdle~ak~Fae~Ih~~~P~~~LaYN~S 320 (433)
T COG2224 241 LITSDVDPSDGEFITGERTSEGFYRTKGGIEQAIARGLAYAPYADLLWCETSTPDLEEARQFAEAIHAKYPGKLLAYNCS 320 (433)
T ss_pred cccccCCcccCCccCCCcCCCceeeecCchHHHHHHHHhcCcccceEEEecCCCCHHHHHHHHHHHHHhCCcceeeecCC
Confidence 12599999764 578999988 0 2 5
Q ss_pred CCC-------------CHHHHHhCCccEEEechHHHHHHHHHHHHHHHHHHHcCCcccc
Q 037554 91 TLH-------------TPEELKAMGFHLTVHPLTALYASARALVDVLKTLKESGTTRDH 136 (173)
Q Consensus 91 p~~-------------~~~eL~~lGv~~v~~~~~~~~aa~~a~~~~~~~l~~~g~~~~~ 136 (173)
|.+ -..||.++||+.-.++...++....+|.+.++.++++|+...+
T Consensus 321 PSFNW~~~~~de~i~~Fq~el~~mG~~fqfITlag~H~~~~s~~elA~~y~~dgM~aYv 379 (433)
T COG2224 321 PSFNWKKNLDDETIAKFQQELGKMGYKFQFITLAGFHSLNYSMFELARAYAQEGMKAYV 379 (433)
T ss_pred CCcCcccccCHHHHHHHHHHHHhheeeEEEEechhhhhhhhhHHHHHHHHHHhchHHHH
Confidence 532 1479999999999999999999999999999999999876543
No 15
>PF00463 ICL: Isocitrate lyase family; InterPro: IPR000918 Isocitrate lyase (4.1.3.1 from EC) [, ] is an enzyme that catalyzes the conversion of isocitrate to succinate and glyoxylate. This is the first step in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. A cysteine, a histidine and a glutamate or aspartate have been found to be important for the enzyme's catalytic activity. Only one cysteine residue is conserved between the sequences of the fungal, plant and bacterial enzymes; it is located in the middle of a conserved hexapeptide. Other enzymes also belong to this family including carboxyvinyl-carboxyphosphonate phosphorylmutase (2.7.8.23 from EC) which catalyses the conversion of 1-carboxyvinyl carboxyphosphonate to 3-(hydrohydroxyphosphoryl) pyruvate carbon dioxide, and phosphoenolpyruvate mutase (5.4.2.9 from EC), which is involved in the biosynthesis of phosphinothricin tripeptide antiobiotics. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1IGW_D 3P0X_B 3EOL_B 3E5B_B 3OQ8_D 3LG3_A 3I4E_D 1F8I_B 1F8M_D 1F61_A ....
Probab=99.78 E-value=1.6e-18 Score=155.76 Aligned_cols=135 Identities=27% Similarity=0.386 Sum_probs=106.6
Q ss_pred CCCCChHHHHHHHHHHHHhCceEEEeccCCC-CccCCCCCCCcccCHHHHHHHHHHHHHhcC--CCC-EEE---------
Q 037554 1 TGGGNALNVQRTVKDLVAAGAAGCFLEDQSW-PKKCGHMHGKQIIPAEEHAAKIASARDAIG--DSD-FVL--------- 67 (173)
Q Consensus 1 tGyG~~~~v~rtv~~~~~aGvagi~iEDq~~-pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~--~~d-~~I--------- 67 (173)
+|||++.+++..++.|+++||+|||||||.. .|||||+.||.|||.+|++.||.|||-+.. +.+ ++|
T Consensus 158 ~GfGG~~~v~kL~K~fiEaGaAgiH~EDQ~~~~KKCGH~~GKVlVPt~e~i~rL~AaRl~~Dimg~~~liiARTDa~~A~ 237 (526)
T PF00463_consen 158 AGFGGLTAVMKLTKLFIEAGAAGIHFEDQLSGEKKCGHMGGKVLVPTSEHINRLVAARLQADIMGVPTLIIARTDAEAAT 237 (526)
T ss_dssp TTSSSHHHHHHHHHHHHHHT-SEEEEESB-GGG-B-STTSBEEE--HHHHHHHHHHHHHHHHHHT---EEEEEE-TTTEE
T ss_pred cCCCCHHHHHHHHHHHHhcCCceechhhccccccceeccCCcEEecHHHHHHHHHHHHHHHHHhCCCcEEEEeechhhhc
Confidence 6999999999999999999999999999986 999999999999999999999999998863 334 444
Q ss_pred --------------------------------------------------------------------------------
Q 037554 68 -------------------------------------------------------------------------------- 67 (173)
Q Consensus 68 -------------------------------------------------------------------------------- 67 (173)
T Consensus 238 Lits~iD~rDh~fi~G~~~~~~~pl~~~l~~ae~~G~~g~ei~~~E~~W~~~A~L~TFdEAV~~~i~~~~~~~k~~~~~~ 317 (526)
T PF00463_consen 238 LITSDIDPRDHPFILGATNPEVKPLAEVLAEAEAAGASGAEIQAIEDEWYKKAGLMTFDEAVEDAIKASEYSNKKSRIEE 317 (526)
T ss_dssp EES-TTSCCCGGGEEEEE-TTS--HHHHHHHHHHS---SHHHHHHHHHHHHHS-EE-SHHHHHHHHHTSS-S-HHHHHHH
T ss_pred ccccCccccccchhcCCCCCCCccHHHHHHHHHHcCCChHHHHHHHHHHHHcCCeeEHHHHHHHHHHhccccchHHHHHH
Confidence
Q ss_pred -----------------------------------------------------------ecCCcccccCC-CCHHHHhhh
Q 037554 68 -----------------------------------------------------------ARADASFVEAP-RNDNEANWV 87 (173)
Q Consensus 68 -----------------------------------------------------------AGAD~ifv~g~-~~~e~i~~i 87 (173)
-.||+|+++.- .+.+++++|
T Consensus 318 ~~~~~~~~~~~S~~eaR~lAk~l~g~~vfFDWD~pRt~EG~Y~~k~g~~~aI~Ra~A~aPyADllW~ET~~Pd~~~a~~F 397 (526)
T PF00463_consen 318 YLSKVKGKSFLSLREARALAKELLGKDVFFDWDAPRTREGYYRFKGGTEAAIARALAFAPYADLLWMETKTPDLAQAKEF 397 (526)
T ss_dssp HHHHHTT--HH---HHHHHHHHHHSS--GBBTTTCE-TTS-EEE--SHHHHHHHHHHHGGG-SEEEE--SS--HHHHHHH
T ss_pred HHHHccccCcccHHHHHHHHHHhcCCCceEecccccChhhchhcCCChHHHHHHHHhhCcccCeeeEecCCCCHHHHHHH
Confidence 58999999875 477888888
Q ss_pred -----------h---c-CCCCC-------------HHHHHhCCccEEEechHHHHHHHHHHHHHHHHHHHcCCccc
Q 037554 88 -----------W---G-HTLHT-------------PEELKAMGFHLTVHPLTALYASARALVDVLKTLKESGTTRD 135 (173)
Q Consensus 88 -----------~---g-~p~~~-------------~~eL~~lGv~~v~~~~~~~~aa~~a~~~~~~~l~~~g~~~~ 135 (173)
. + +|.++ ..+|.++||..-.++...+++...++.+.++.+++.|+...
T Consensus 398 a~~V~~~~P~k~LaYNlSPSFNW~~~~~~~ei~~F~~dLak~G~~~QfItLaG~H~~~~~~~~lAk~y~~~GM~AY 473 (526)
T PF00463_consen 398 AEGVHAVYPGKKLAYNLSPSFNWDAAGSDDEIKSFQWDLAKLGYVWQFITLAGFHSLALSMFELAKDYKKEGMLAY 473 (526)
T ss_dssp HHHHHHHSTT-EEEEEE-SSSTHHHHS-HHHHHHHHHHHHHTTEEEEEETTHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHhCCcceEEecCCcccchhhhhhhhHHHHHHHHHHhhhHheeeeeHHHHHHhHHHHHHHHHHHHHcCHHHH
Confidence 0 2 55432 47899999999999999999999999999999999997654
No 16
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=99.28 E-value=7.3e-12 Score=104.33 Aligned_cols=69 Identities=22% Similarity=0.154 Sum_probs=54.7
Q ss_pred CCCCC-hHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc------CCC--CE------
Q 037554 1 TGGGN-ALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI------GDS--DF------ 65 (173)
Q Consensus 1 tGyG~-~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~------~~~--d~------ 65 (173)
+|||+ +.++.+++++|+++||+|||||||. ++++||++++++. .+. ..
T Consensus 82 ~G~g~~~~~~~~~~~~l~~aGa~gv~iED~~-----------------~~~~~i~ai~~a~i~ViaRtd~~pq~~~~~gg 144 (240)
T cd06556 82 FGAYGAPTAAFELAKTFMRAGAAGVKIEGGE-----------------WHIETLQMLTAAAVPVIAHTGLTPQSVNTSGG 144 (240)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCcEEEEcCcH-----------------HHHHHHHHHHHcCCeEEEEeCCchhhhhccCC
Confidence 68995 5999999999999999999999983 5677777777662 110 00
Q ss_pred ---E----------E--------ecCCcccccCCCCHHHHhhh
Q 037554 66 ---V----------L--------ARADASFVEAPRNDNEANWV 87 (173)
Q Consensus 66 ---~----------I--------AGAD~ifv~g~~~~e~i~~i 87 (173)
+ | ||||+||++++ +.+++++|
T Consensus 145 ~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~-~~e~~~~i 186 (240)
T cd06556 145 DEGQYRGDEAGEQLIADALAYAPAGADLIVMECV-PVELAKQI 186 (240)
T ss_pred ceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC-CHHHHHHH
Confidence 0 0 99999999998 99999998
No 17
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=98.91 E-value=2.5e-09 Score=89.85 Aligned_cols=67 Identities=22% Similarity=0.097 Sum_probs=50.5
Q ss_pred CCC-hHHH-HHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcC---------------CCCE
Q 037554 3 GGN-ALNV-QRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIG---------------DSDF 65 (173)
Q Consensus 3 yG~-~~~v-~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~---------------~~d~ 65 (173)
|++ +.++ .++++.+.++||+||+|||+ +++++||++++++.. ..++
T Consensus 85 y~~~~~~av~~a~r~~~~aGa~aVkiEd~-----------------~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~ 147 (254)
T cd06557 85 YQTSPEQALRNAARLMKEAGADAVKLEGG-----------------AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGY 147 (254)
T ss_pred ccCCHHHHHHHHHHHHHHhCCeEEEEcCc-----------------HHHHHHHHHHHHcCCCeeccccccceeeeccCCc
Confidence 443 5554 45566666699999999997 488999999988762 1334
Q ss_pred EE--------------------ecCCcccccCCCCHHHHhhh
Q 037554 66 VL--------------------ARADASFVEAPRNDNEANWV 87 (173)
Q Consensus 66 ~I--------------------AGAD~ifv~g~~~~e~i~~i 87 (173)
.+ ||||+||++++. .++++++
T Consensus 148 ~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v~-~~~~~~i 188 (254)
T cd06557 148 KVQGKTEEEAERLLEDALALEEAGAFALVLECVP-AELAKEI 188 (254)
T ss_pred eeccCCHHHHHHHHHHHHHHHHCCCCEEEEcCCC-HHHHHHH
Confidence 44 999999999995 4788888
No 18
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=98.81 E-value=1.4e-08 Score=85.81 Aligned_cols=68 Identities=21% Similarity=0.074 Sum_probs=51.9
Q ss_pred CCC-ChHHH-HHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc---------------CCCC
Q 037554 2 GGG-NALNV-QRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI---------------GDSD 64 (173)
Q Consensus 2 GyG-~~~~v-~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~---------------~~~d 64 (173)
||+ ++.++ .++++.+.++||+||+|||+ +++++||++++++. ...+
T Consensus 87 ~y~~~~~~av~~a~r~~~~aGa~aVkiEdg-----------------~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg 149 (264)
T PRK00311 87 SYQASPEQALRNAGRLMKEAGAHAVKLEGG-----------------EEVAETIKRLVERGIPVMGHLGLTPQSVNVLGG 149 (264)
T ss_pred CccCCHHHHHHHHHHHHHHhCCeEEEEcCc-----------------HHHHHHHHHHHHCCCCEeeeecccceeecccCC
Confidence 453 56774 55566666699999999997 47899999999875 1124
Q ss_pred EEE--------------------ecCCcccccCCCCHHHHhhh
Q 037554 65 FVL--------------------ARADASFVEAPRNDNEANWV 87 (173)
Q Consensus 65 ~~I--------------------AGAD~ifv~g~~~~e~i~~i 87 (173)
|.| ||||+||++++.+ +.++++
T Consensus 150 ~~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v~~-~~~~~i 191 (264)
T PRK00311 150 YKVQGRDEEAAEKLLEDAKALEEAGAFALVLECVPA-ELAKEI 191 (264)
T ss_pred eeeecCCHHHHHHHHHHHHHHHHCCCCEEEEcCCCH-HHHHHH
Confidence 555 9999999999954 788888
No 19
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=98.24 E-value=4.2e-06 Score=70.78 Aligned_cols=69 Identities=13% Similarity=0.043 Sum_probs=49.2
Q ss_pred CCCCChHHHHHHHHHHHH-hCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHh---------------cCCCC
Q 037554 1 TGGGNALNVQRTVKDLVA-AGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDA---------------IGDSD 64 (173)
Q Consensus 1 tGyG~~~~v~rtv~~~~~-aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a---------------~~~~d 64 (173)
.+|+++....+++.++.+ +||+||+|||. .+++.+|+++.++ +...+
T Consensus 86 ~sy~~~e~a~~na~rl~~eaGa~aVkiEgg-----------------~~~~~~i~~l~~~gIpV~gHiGltPq~a~~~gg 148 (263)
T TIGR00222 86 MSYATPEQALKNAARVMQETGANAVKLEGG-----------------EWLVETVQMLTERGVPVVGHLGLTPQSVNILGG 148 (263)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCeEEEEcCc-----------------HhHHHHHHHHHHCCCCEEEecCCCceeEeecCC
Confidence 378888899999998887 99999999996 2233444443332 11112
Q ss_pred EEE--------------------ecCCcccccCCCCHHHHhhh
Q 037554 65 FVL--------------------ARADASFVEAPRNDNEANWV 87 (173)
Q Consensus 65 ~~I--------------------AGAD~ifv~g~~~~e~i~~i 87 (173)
|.+ ||||+||++++. .+.+++|
T Consensus 149 y~~qgrt~~~a~~~i~~A~a~e~AGA~~ivlE~vp-~~~a~~I 190 (263)
T TIGR00222 149 YKVQGKDEEAAKKLLEDALALEEAGAQLLVLECVP-VELAAKI 190 (263)
T ss_pred eeecCCCHHHHHHHHHHHHHHHHcCCCEEEEcCCc-HHHHHHH
Confidence 222 999999999987 5888888
No 20
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=97.25 E-value=0.0011 Score=57.88 Aligned_cols=78 Identities=18% Similarity=0.077 Sum_probs=50.0
Q ss_pred CC-ChHHHHHHHHHHH-HhCceEEEeccCC-C------------CccCCCCC----------CCcc--cCHHHHHHHHHH
Q 037554 3 GG-NALNVQRTVKDLV-AAGAAGCFLEDQS-W------------PKKCGHMH----------GKQI--IPAEEHAAKIAS 55 (173)
Q Consensus 3 yG-~~~~v~rtv~~~~-~aGvagi~iEDq~-~------------pKrcg~~~----------g~~l--~~~ee~~~kI~A 55 (173)
|+ ++..+.+++.++. ++||.||+|||.. . ---|||.. |-.+ .+.++..+-|+.
T Consensus 108 Y~~s~e~av~nA~rl~~eaGa~aVKlEGg~~~~~~~I~~l~~~GIPV~gHiGLtPQs~~~lGGykvqGr~~~~a~~li~d 187 (332)
T PLN02424 108 YESSTDQAVESAVRMLKEGGMDAVKLEGGSPSRVTAAKAIVEAGIAVMGHVGLTPQAISVLGGFRPQGRTAESAVKVVET 187 (332)
T ss_pred CCCCHHHHHHHHHHHHHHhCCcEEEECCCcHHHHHHHHHHHHcCCCEEEeecccceeehhhcCccccCCCHHHHHHHHHH
Confidence 76 7899999999995 5999999999982 0 11344442 1011 123333333343
Q ss_pred HHHhcCCCCEEEecCCcccccCCCCHHHHhhh
Q 037554 56 ARDAIGDSDFVLARADASFVEAPRNDNEANWV 87 (173)
Q Consensus 56 a~~a~~~~d~~IAGAD~ifv~g~~~~e~i~~i 87 (173)
|+.... |||++|+++++.+. ..++|
T Consensus 188 A~ale~------AGAf~ivLE~Vp~~-la~~I 212 (332)
T PLN02424 188 ALALQE------AGCFAVVLECVPAP-VAAAI 212 (332)
T ss_pred HHHHHH------cCCcEEEEcCCcHH-HHHHH
Confidence 333322 99999999998665 66666
No 21
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=95.44 E-value=0.23 Score=40.46 Aligned_cols=98 Identities=11% Similarity=-0.046 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcC--CCCEEE-----------------
Q 037554 7 LNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIG--DSDFVL----------------- 67 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~--~~d~~I----------------- 67 (173)
......+++..++||.++.+...... .+.++..+.++.++++.. +..++|
T Consensus 76 ~~~~~~v~~a~~~Ga~~v~~~~~~~~-----------~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~ 144 (235)
T cd00958 76 KVLVASVEDAVRLGADAVGVTVYVGS-----------EEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDL 144 (235)
T ss_pred hhhhcCHHHHHHCCCCEEEEEEecCC-----------chHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHH
Confidence 34455688999999999988886532 123555666666555421 333443
Q ss_pred ----------ecCCcccccCCCCHHHHhhhh---cCC--------CCC-------HHHHHhCCccEEEechHHHHH
Q 037554 68 ----------ARADASFVEAPRNDNEANWVW---GHT--------LHT-------PEELKAMGFHLTVHPLTALYA 115 (173)
Q Consensus 68 ----------AGAD~ifv~g~~~~e~i~~i~---g~p--------~~~-------~~eL~~lGv~~v~~~~~~~~a 115 (173)
+|||.|.+....+.+.++++- ..| ..| .+++.+.|++.++++...+.+
T Consensus 145 i~~~~~~a~~~GaD~Ik~~~~~~~~~~~~i~~~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~ 220 (235)
T cd00958 145 IAYAARIGAELGADIVKTKYTGDAESFKEVVEGCPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQR 220 (235)
T ss_pred HHHHHHHHHHHCCCEEEecCCCCHHHHHHHHhcCCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcC
Confidence 799999997666777877771 122 112 678899999999999888743
No 22
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=95.18 E-value=0.23 Score=41.37 Aligned_cols=96 Identities=10% Similarity=-0.040 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcC--CCCEEE-------------------
Q 037554 9 VQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIG--DSDFVL------------------- 67 (173)
Q Consensus 9 v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~--~~d~~I------------------- 67 (173)
....+++..+.||.+|++.+...+ .+..++++.++++++... +..|+|
T Consensus 92 ~~~~v~~al~~Ga~~v~~~~~~g~-----------~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~ 160 (258)
T TIGR01949 92 IVTTVEDAIRMGADAVSIHVNVGS-----------DTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAH 160 (258)
T ss_pred eeeeHHHHHHCCCCEEEEEEecCC-----------chHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHH
Confidence 456799999999999999998542 123455566666665432 333443
Q ss_pred -------ecCCcccccCCCCHHHHhhhh---cCC-----CC----------CHHHHHhCCccEEEechHHHHH
Q 037554 68 -------ARADASFVEAPRNDNEANWVW---GHT-----LH----------TPEELKAMGFHLTVHPLTALYA 115 (173)
Q Consensus 68 -------AGAD~ifv~g~~~~e~i~~i~---g~p-----~~----------~~~eL~~lGv~~v~~~~~~~~a 115 (173)
+|||.|.++...+.+.++++- ..| .. .++++.+.|++.++.+...+++
T Consensus 161 ~~~~a~~~GADyikt~~~~~~~~l~~~~~~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~ 233 (258)
T TIGR01949 161 AARLGAELGADIVKTPYTGDIDSFRDVVKGCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQH 233 (258)
T ss_pred HHHHHHHHCCCEEeccCCCCHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcC
Confidence 799999987666677777772 123 12 2567779999999999888765
No 23
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=94.05 E-value=1.2 Score=38.61 Aligned_cols=109 Identities=20% Similarity=0.066 Sum_probs=75.1
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCC-CccCCCCCCCc-ccCHHHHHHHHHHHHHhcCCCCEEE---------------
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSW-PKKCGHMHGKQ-IIPAEEHAAKIASARDAIGDSDFVL--------------- 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~-pKrcg~~~g~~-l~~~ee~~~kI~Aa~~a~~~~d~~I--------------- 67 (173)
+|....++++..++.|+.+|+|-=... ||-+....|.- |-.++...+-|+|++++-.+..+.+
T Consensus 77 dp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ 156 (323)
T COG0042 77 DPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALE 156 (323)
T ss_pred CHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHH
Confidence 688899999999999999999877664 55555555544 4478888888888888763122222
Q ss_pred -------ecCCcccccCCC---------CHHHHhhhh---c-CC------CCCH----HHHHhCCccEEEechHHH
Q 037554 68 -------ARADASFVEAPR---------NDNEANWVW---G-HT------LHTP----EELKAMGFHLTVHPLTAL 113 (173)
Q Consensus 68 -------AGAD~ifv~g~~---------~~e~i~~i~---g-~p------~~~~----~eL~~lGv~~v~~~~~~~ 113 (173)
+|+|.+.|||.+ +-+.|.++. . .| ..|. +-|..-|+.-|..|-..+
T Consensus 157 ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~ 232 (323)
T COG0042 157 IARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGADGVMIGRGAL 232 (323)
T ss_pred HHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHc
Confidence 999999999965 455566661 1 23 1343 345567888888884443
No 24
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=92.56 E-value=0.86 Score=38.28 Aligned_cols=94 Identities=21% Similarity=0.201 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc-CCCCEEE----------ecCCcccc
Q 037554 7 LNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI-GDSDFVL----------ARADASFV 75 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~-~~~d~~I----------AGAD~ifv 75 (173)
.++.+..+.|+++||+||.+--.. + ++.|. -+.+..++.+++-- -..||++ +|||+|.+
T Consensus 70 ~~~~~~A~~~~~~GA~aisvlte~--~---~f~g~-----~~~l~~v~~~v~iPvl~kdfi~~~~qi~~a~~~GAD~VlL 139 (260)
T PRK00278 70 FDPVEIAKAYEAGGAACLSVLTDE--R---FFQGS-----LEYLRAARAAVSLPVLRKDFIIDPYQIYEARAAGADAILL 139 (260)
T ss_pred CCHHHHHHHHHhCCCeEEEEeccc--c---cCCCC-----HHHHHHHHHhcCCCEEeeeecCCHHHHHHHHHcCCCEEEE
Confidence 467888999999999999873321 1 11221 13444444332210 0256665 99999998
Q ss_pred cCCC-CHHHHhhh-----h-c-CC---CCCHH---HHHhCCccEEEech
Q 037554 76 EAPR-NDNEANWV-----W-G-HT---LHTPE---ELKAMGFHLTVHPL 110 (173)
Q Consensus 76 ~g~~-~~e~i~~i-----~-g-~p---~~~~~---eL~~lGv~~v~~~~ 110 (173)
.+.. +.++++++ + | .+ ..+.+ ...++|++.+.+.+
T Consensus 140 i~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~ 188 (260)
T PRK00278 140 IVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINN 188 (260)
T ss_pred EeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECC
Confidence 7643 56677777 2 4 33 34554 45788999998875
No 25
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=92.34 E-value=0.59 Score=40.12 Aligned_cols=75 Identities=20% Similarity=0.229 Sum_probs=56.3
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCC-CCEEE----------------
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGD-SDFVL---------------- 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~-~d~~I---------------- 67 (173)
|.....+.++.+++.||.||.+==++ +.-..++.+|..+=+++++++..+ ..+++
T Consensus 27 D~~~l~~lv~~li~~Gv~Gi~v~Gst--------GE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~ 98 (309)
T cd00952 27 DLDETARLVERLIAAGVDGILTMGTF--------GECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRA 98 (309)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccc--------ccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHH
Confidence 45778899999999999999875444 445678999999999999987653 44455
Q ss_pred ---ecCCcccccCC----CCHHHHhhh
Q 037554 68 ---ARADASFVEAP----RNDNEANWV 87 (173)
Q Consensus 68 ---AGAD~ifv~g~----~~~e~i~~i 87 (173)
+|||++++..+ .+.+++...
T Consensus 99 A~~~Gad~vlv~~P~y~~~~~~~l~~y 125 (309)
T cd00952 99 LLDLGADGTMLGRPMWLPLDVDTAVQF 125 (309)
T ss_pred HHHhCCCEEEECCCcCCCCCHHHHHHH
Confidence 89998887544 355665554
No 26
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=92.07 E-value=0.76 Score=39.21 Aligned_cols=45 Identities=16% Similarity=0.064 Sum_probs=37.8
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~ 60 (173)
++..+.+.++++.++|+.-|+|-|.++ +..+.+..+.+++.++.-
T Consensus 153 ~~~~~~~~~~~~~~~G~d~i~l~DT~G-----------~~~P~~v~~lv~~l~~~~ 197 (287)
T PRK05692 153 PPEAVADVAERLFALGCYEISLGDTIG-----------VGTPGQVRAVLEAVLAEF 197 (287)
T ss_pred CHHHHHHHHHHHHHcCCcEEEeccccC-----------ccCHHHHHHHHHHHHHhC
Confidence 567889999999999999999999885 456778888888888764
No 27
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=92.06 E-value=1.3 Score=37.42 Aligned_cols=75 Identities=15% Similarity=0.194 Sum_probs=55.2
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCC-CCEEE----------------
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGD-SDFVL---------------- 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~-~d~~I---------------- 67 (173)
|.....+.++.+.+.|+.||.+ ||+++.-..++.+|-.+=++.++++..+ ..++.
T Consensus 17 D~~~~~~~i~~l~~~Gv~Gi~~--------~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~ 88 (285)
T TIGR00674 17 DFAALEKLIDFQIENGTDAIVV--------VGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKF 88 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE--------CccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHH
Confidence 3466889999999999999986 4444445678999999999888886543 44454
Q ss_pred ---ecCCcccccCC----CCHHHHhhh
Q 037554 68 ---ARADASFVEAP----RNDNEANWV 87 (173)
Q Consensus 68 ---AGAD~ifv~g~----~~~e~i~~i 87 (173)
+|||+|++..+ .+.+++.+.
T Consensus 89 a~~~Gad~v~v~pP~y~~~~~~~i~~~ 115 (285)
T TIGR00674 89 AEDVGADGFLVVTPYYNKPTQEGLYQH 115 (285)
T ss_pred HHHcCCCEEEEcCCcCCCCCHHHHHHH
Confidence 89999887543 356666555
No 28
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=92.01 E-value=1.3 Score=37.48 Aligned_cols=75 Identities=17% Similarity=0.162 Sum_probs=54.6
Q ss_pred ChHHHHHHHHHHHHh-CceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCC-CCEEE---------------
Q 037554 5 NALNVQRTVKDLVAA-GAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGD-SDFVL--------------- 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~a-Gvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~-~d~~I--------------- 67 (173)
|.....+.++.+.+. |+.||.+- |+++.-..++.+|-.+=+++++++..+ ..+++
T Consensus 19 D~~~~~~~i~~l~~~~Gv~gi~~~--------GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~ 90 (288)
T cd00954 19 NEDVLRAIVDYLIEKQGVDGLYVN--------GSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAK 90 (288)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEC--------cCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHH
Confidence 346678999999999 99999864 444445678899999999999887654 33444
Q ss_pred ----ecCCcccccCC----CCHHHHhhh
Q 037554 68 ----ARADASFVEAP----RNDNEANWV 87 (173)
Q Consensus 68 ----AGAD~ifv~g~----~~~e~i~~i 87 (173)
+|||++++..+ .+.+++.+.
T Consensus 91 ~a~~~Gad~v~~~~P~y~~~~~~~i~~~ 118 (288)
T cd00954 91 HAEELGYDAISAITPFYYKFSFEEIKDY 118 (288)
T ss_pred HHHHcCCCEEEEeCCCCCCCCHHHHHHH
Confidence 99999985332 355666554
No 29
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=91.78 E-value=0.81 Score=38.63 Aligned_cols=73 Identities=10% Similarity=0.058 Sum_probs=54.0
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE-----------------
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL----------------- 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I----------------- 67 (173)
|.....+.++.+++.||.||.+== .++.-...+.+|-.+=++.++++.. .++.
T Consensus 18 D~~~~~~li~~l~~~Gv~Gl~~~G--------stGE~~~Lt~eEr~~l~~~~~~~~~--~vi~gvg~~~~~~ai~~a~~a 87 (279)
T cd00953 18 DKEKFKKHCENLISKGIDYVFVAG--------TTGLGPSLSFQEKLELLKAYSDITD--KVIFQVGSLNLEESIELARAA 87 (279)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEcc--------cCCCcccCCHHHHHHHHHHHHHHcC--CEEEEeCcCCHHHHHHHHHHH
Confidence 457788999999999999998744 4444567899999999998888753 3333
Q ss_pred --ecCCcccccCC-----CCHHHHhhh
Q 037554 68 --ARADASFVEAP-----RNDNEANWV 87 (173)
Q Consensus 68 --AGAD~ifv~g~-----~~~e~i~~i 87 (173)
+|||++++..+ .+.+++.+.
T Consensus 88 ~~~Gad~v~v~~P~y~~~~~~~~i~~y 114 (279)
T cd00953 88 KSFGIYAIASLPPYYFPGIPEEWLIKY 114 (279)
T ss_pred HHcCCCEEEEeCCcCCCCCCHHHHHHH
Confidence 99999987322 256666554
No 30
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=91.62 E-value=1.9 Score=35.74 Aligned_cols=27 Identities=30% Similarity=0.243 Sum_probs=25.0
Q ss_pred CCCCChHHHHHHHHHHHHhCceEEEec
Q 037554 1 TGGGNALNVQRTVKDLVAAGAAGCFLE 27 (173)
Q Consensus 1 tGyG~~~~v~rtv~~~~~aGvagi~iE 27 (173)
.||.+..+..+.++.++++||..|+|.
T Consensus 8 ~G~P~~~~~~~~~~~l~~~Gad~iel~ 34 (242)
T cd04724 8 AGDPDLETTLEILKALVEAGADIIELG 34 (242)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEC
Confidence 488888899999999999999999998
No 31
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=91.33 E-value=0.5 Score=40.11 Aligned_cols=117 Identities=21% Similarity=0.192 Sum_probs=69.6
Q ss_pred HHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE-----------------------
Q 037554 11 RTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL----------------------- 67 (173)
Q Consensus 11 rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I----------------------- 67 (173)
-+.+-++++|+.-|.+-|+..---.||.+ ..=++.|+|+.-.+|.++...+ -|+|
T Consensus 27 ~~A~~~d~agvD~iLVGDSlgmv~~G~~s-T~~vtld~mi~h~~aV~Rga~~-~~vv~DmPf~sy~~s~e~av~nA~rl~ 104 (261)
T PF02548_consen 27 PSARIADEAGVDIILVGDSLGMVVLGYDS-TLPVTLDEMIYHTKAVRRGAPN-AFVVADMPFGSYQASPEQAVRNAGRLM 104 (261)
T ss_dssp HHHHHHHHTT-SEEEE-TTHHHHTT--SS-STT--HHHHHHHHHHHHHH-TS-SEEEEE--TTSSTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEeCCcHHHheeCCCC-CcCcCHHHHHHHHHHHHhcCCC-ceEEecCCcccccCCHHHHHHHHHHHH
Confidence 45677899999999999997644445543 3347999999999999988753 4666
Q ss_pred --ecCCcccccCCC-CHHHHhhhh--cCC-----CCCHHHHHhC-CccEEEechHHHHHHHHHHHHHHHHHHHcCCc
Q 037554 68 --ARADASFVEAPR-NDNEANWVW--GHT-----LHTPEELKAM-GFHLTVHPLTALYASARALVDVLKTLKESGTT 133 (173)
Q Consensus 68 --AGAD~ifv~g~~-~~e~i~~i~--g~p-----~~~~~eL~~l-Gv~~v~~~~~~~~aa~~a~~~~~~~l~~~g~~ 133 (173)
+|||+|-++|-. ..+.++++. |-| .++++....+ ||+.. |-. ......+.+.++++-+.|-+
T Consensus 105 ke~GadaVKlEGg~~~~~~i~~l~~~GIPV~gHiGLtPQ~~~~~GGyr~q--Gk~--~~~a~~l~~~A~ale~AGaf 177 (261)
T PF02548_consen 105 KEAGADAVKLEGGAEIAETIKALVDAGIPVMGHIGLTPQSVHQLGGYRVQ--GKT--AEEAEKLLEDAKALEEAGAF 177 (261)
T ss_dssp HTTT-SEEEEEBSGGGHHHHHHHHHTT--EEEEEES-GGGHHHHTSS--C--STS--HHHHHHHHHHHHHHHHHT-S
T ss_pred HhcCCCEEEeccchhHHHHHHHHHHCCCcEEEEecCchhheeccCCceEE--ecC--HHHHHHHHHHHHHHHHcCcc
Confidence 999999999864 567777772 444 3566666655 45544 222 12233455556666666654
No 32
>PLN02417 dihydrodipicolinate synthase
Probab=91.32 E-value=1.6 Score=36.78 Aligned_cols=75 Identities=15% Similarity=0.164 Sum_probs=54.8
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCC-CCEEE----------------
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGD-SDFVL---------------- 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~-~d~~I---------------- 67 (173)
|.....+.++.+.+.|+.||.+-=++ +.-..++.+|..+=++.+++...+ ..+++
T Consensus 20 D~~~~~~~i~~l~~~Gv~Gi~~~Gst--------GE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~ 91 (280)
T PLN02417 20 DLEAYDSLVNMQIENGAEGLIVGGTT--------GEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQ 91 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccC--------cchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHH
Confidence 34667899999999999999875443 445678999999988888877543 44444
Q ss_pred ---ecCCcccccCC----CCHHHHhhh
Q 037554 68 ---ARADASFVEAP----RNDNEANWV 87 (173)
Q Consensus 68 ---AGAD~ifv~g~----~~~e~i~~i 87 (173)
+|||++++..+ .+.+++.+.
T Consensus 92 a~~~Gadav~~~~P~y~~~~~~~i~~~ 118 (280)
T PLN02417 92 GFAVGMHAALHINPYYGKTSQEGLIKH 118 (280)
T ss_pred HHHcCCCEEEEcCCccCCCCHHHHHHH
Confidence 99999887543 355666554
No 33
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=91.26 E-value=0.6 Score=44.75 Aligned_cols=70 Identities=14% Similarity=0.198 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhCceEEEec-cCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc-CCCCEEE----------ecCCccc
Q 037554 7 LNVQRTVKDLVAAGAAGCFLE-DQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI-GDSDFVL----------ARADASF 74 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iE-Dq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~-~~~d~~I----------AGAD~if 74 (173)
.+....++.|+++||++|.+= |.. ++.| |. +...+++.++.-- -..||+| +|||+|.
T Consensus 70 ~d~~~~a~~y~~~GA~aiSVlTe~~------~F~G----s~-~~l~~vr~~v~~PvLrKDFIid~~QI~ea~~~GADavL 138 (695)
T PRK13802 70 PDPAALAREYEQGGASAISVLTEGR------RFLG----SL-DDFDKVRAAVHIPVLRKDFIVTDYQIWEARAHGADLVL 138 (695)
T ss_pred CCHHHHHHHHHHcCCcEEEEecCcC------cCCC----CH-HHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCEee
Confidence 467888899999999999763 332 1223 22 4555555543211 1368888 8999987
Q ss_pred ccC-CCCHHHHhhh
Q 037554 75 VEA-PRNDNEANWV 87 (173)
Q Consensus 75 v~g-~~~~e~i~~i 87 (173)
... +-+.++++++
T Consensus 139 LI~~~L~~~~l~~l 152 (695)
T PRK13802 139 LIVAALDDAQLKHL 152 (695)
T ss_pred hhHhhcCHHHHHHH
Confidence 533 3455566555
No 34
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=90.75 E-value=0.49 Score=40.05 Aligned_cols=70 Identities=23% Similarity=0.266 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhCceEEEe-ccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc-CCCCEEE----------ecCCccc
Q 037554 7 LNVQRTVKDLVAAGAAGCFL-EDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI-GDSDFVL----------ARADASF 74 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~i-EDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~-~~~d~~I----------AGAD~if 74 (173)
.+.....+.|++.||++|.+ -|.. ++.|. -+...++++++.-- -..||+| +|||+|.
T Consensus 66 ~dp~~ia~~Ye~~GAa~iSVLTd~~------~F~Gs-----~e~L~~v~~~v~~PvL~KDFiiD~yQI~~Ar~~GADavL 134 (254)
T COG0134 66 FDPVEIAKAYEEGGAAAISVLTDPK------YFQGS-----FEDLRAVRAAVDLPVLRKDFIIDPYQIYEARAAGADAVL 134 (254)
T ss_pred CCHHHHHHHHHHhCCeEEEEecCcc------ccCCC-----HHHHHHHHHhcCCCeeeccCCCCHHHHHHHHHcCcccHH
Confidence 34566789999999999975 3322 22332 24555555444321 1368888 7999987
Q ss_pred ccC-CCCHHHHhhh
Q 037554 75 VEA-PRNDNEANWV 87 (173)
Q Consensus 75 v~g-~~~~e~i~~i 87 (173)
... .-+.++++++
T Consensus 135 LI~~~L~~~~l~el 148 (254)
T COG0134 135 LIVAALDDEQLEEL 148 (254)
T ss_pred HHHHhcCHHHHHHH
Confidence 532 3355555555
No 35
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=90.32 E-value=2.2 Score=36.12 Aligned_cols=75 Identities=17% Similarity=0.132 Sum_probs=55.2
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCC-CCEEE----------------
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGD-SDFVL---------------- 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~-~d~~I---------------- 67 (173)
|.....+.++.+++.||.||.+-=++ +.-..+|.+|-.+-++.++++..+ ..+++
T Consensus 19 D~~~l~~l~~~l~~~Gv~gi~v~Gst--------GE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~t~~~i~~a~~a 90 (289)
T cd00951 19 DEDAYRAHVEWLLSYGAAALFAAGGT--------GEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGYGTATAIAYAQAA 90 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCC--------cCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCCCHHHHHHHHHHH
Confidence 45678899999999999999875444 445678999999999988887542 44455
Q ss_pred --ecCCcccccCC----CCHHHHhhh
Q 037554 68 --ARADASFVEAP----RNDNEANWV 87 (173)
Q Consensus 68 --AGAD~ifv~g~----~~~e~i~~i 87 (173)
+|||++++..+ .+.+++.+.
T Consensus 91 ~~~Gad~v~~~pP~y~~~~~~~i~~~ 116 (289)
T cd00951 91 EKAGADGILLLPPYLTEAPQEGLYAH 116 (289)
T ss_pred HHhCCCEEEECCCCCCCCCHHHHHHH
Confidence 99999886433 355665554
No 36
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=90.31 E-value=0.61 Score=38.96 Aligned_cols=66 Identities=17% Similarity=0.114 Sum_probs=51.3
Q ss_pred HHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE----------------------ec
Q 037554 12 TVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL----------------------AR 69 (173)
Q Consensus 12 tv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I----------------------AG 69 (173)
+.+.++++|+.+|.+-|...--.+|+.. ...++.+||+..+++++++.....++. +|
T Consensus 24 sA~i~e~aG~dai~v~~s~~a~~~G~pD-~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~l~~aG 102 (240)
T cd06556 24 MAKQFADAGLNVMLVGDSQGMTVAGYDD-TLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTFMRAG 102 (240)
T ss_pred HHHHHHHcCCCEEEEChHHHHHhcCCCC-CCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHHHHHcC
Confidence 4577889999999999987654455543 467899999999999998764333333 99
Q ss_pred CCcccccCC
Q 037554 70 ADASFVEAP 78 (173)
Q Consensus 70 AD~ifv~g~ 78 (173)
|++|-+++-
T Consensus 103 a~gv~iED~ 111 (240)
T cd06556 103 AAGVKIEGG 111 (240)
T ss_pred CcEEEEcCc
Confidence 999999884
No 37
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=90.20 E-value=5.3 Score=33.79 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=23.0
Q ss_pred CCCCh---HHHHHHHHHHHHhCceEEEeccC
Q 037554 2 GGGNA---LNVQRTVKDLVAAGAAGCFLEDQ 29 (173)
Q Consensus 2 GyG~~---~~v~rtv~~~~~aGvagi~iEDq 29 (173)
+|-|+ -.+.+.++.+.++|+.|+.|-|-
T Consensus 98 ~Y~N~i~~~G~e~F~~~~~~aGvdgviipDL 128 (263)
T CHL00200 98 TYYNPVLHYGINKFIKKISQAGVKGLIIPDL 128 (263)
T ss_pred ecccHHHHhCHHHHHHHHHHcCCeEEEecCC
Confidence 56665 24678899999999999999994
No 38
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=90.17 E-value=2.3 Score=36.09 Aligned_cols=75 Identities=13% Similarity=0.171 Sum_probs=55.1
Q ss_pred ChHHHHHHHHHHHHhC-ceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCC-CCEEE---------------
Q 037554 5 NALNVQRTVKDLVAAG-AAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGD-SDFVL--------------- 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aG-vagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~-~d~~I--------------- 67 (173)
|.....+.++.+++.| |.||.+==++ +.-..++.+|..+=++.+++...+ ..+++
T Consensus 19 D~~~~~~~i~~~i~~G~v~gi~~~Gst--------GE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~ 90 (290)
T TIGR00683 19 NEKGLRQIIRHNIDKMKVDGLYVGGST--------GENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGK 90 (290)
T ss_pred CHHHHHHHHHHHHhCCCcCEEEECCcc--------cccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHH
Confidence 4467889999999999 9999875544 334567999999999988887543 44555
Q ss_pred ----ecCCcccccCC----CCHHHHhhh
Q 037554 68 ----ARADASFVEAP----RNDNEANWV 87 (173)
Q Consensus 68 ----AGAD~ifv~g~----~~~e~i~~i 87 (173)
+|||+|.+..+ .+.+++...
T Consensus 91 ~a~~~Gad~v~v~~P~y~~~~~~~i~~y 118 (290)
T TIGR00683 91 YATELGYDCLSAVTPFYYKFSFPEIKHY 118 (290)
T ss_pred HHHHhCCCEEEEeCCcCCCCCHHHHHHH
Confidence 89999987443 355665554
No 39
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=90.15 E-value=2.2 Score=36.14 Aligned_cols=75 Identities=13% Similarity=0.136 Sum_probs=54.4
Q ss_pred ChHHHHHHHHHHHH-hCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCC-CCEEE---------------
Q 037554 5 NALNVQRTVKDLVA-AGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGD-SDFVL--------------- 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~-aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~-~d~~I--------------- 67 (173)
|.....+.++.+.+ .||.||-+-= +++.-..++.+|..+=++.++++..+ ..++.
T Consensus 22 D~~~~~~li~~l~~~~Gv~gi~v~G--------stGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~ 93 (293)
T PRK04147 22 DEQGLRRLVRFNIEKQGIDGLYVGG--------STGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAK 93 (293)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEECC--------CccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHH
Confidence 34678899999999 9999998644 44445678999999999998887643 33343
Q ss_pred ----ecCCcccccCC----CCHHHHhhh
Q 037554 68 ----ARADASFVEAP----RNDNEANWV 87 (173)
Q Consensus 68 ----AGAD~ifv~g~----~~~e~i~~i 87 (173)
+|||++.+..+ .+.+++.+.
T Consensus 94 ~a~~~Gad~v~v~~P~y~~~~~~~l~~~ 121 (293)
T PRK04147 94 YATELGYDAISAVTPFYYPFSFEEICDY 121 (293)
T ss_pred HHHHcCCCEEEEeCCcCCCCCHHHHHHH
Confidence 89999987543 245555544
No 40
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=89.95 E-value=2.7 Score=35.43 Aligned_cols=75 Identities=21% Similarity=0.304 Sum_probs=54.7
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCC-CCEEE----------------
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGD-SDFVL---------------- 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~-~d~~I---------------- 67 (173)
|.....+.++.+.+.|+.||.+= |+.+.-..++.+|-.+=++.++++..+ ..+++
T Consensus 20 D~~~l~~~i~~l~~~Gv~gi~~~--------Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~ 91 (292)
T PRK03170 20 DFAALRKLVDYLIANGTDGLVVV--------GTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKF 91 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEC--------CcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHH
Confidence 34667899999999999999864 343445678999999999988887643 44455
Q ss_pred ---ecCCcccccCC----CCHHHHhhh
Q 037554 68 ---ARADASFVEAP----RNDNEANWV 87 (173)
Q Consensus 68 ---AGAD~ifv~g~----~~~e~i~~i 87 (173)
+|||+|++..+ .+.+++.+.
T Consensus 92 a~~~G~d~v~~~pP~~~~~~~~~i~~~ 118 (292)
T PRK03170 92 AEKAGADGALVVTPYYNKPTQEGLYQH 118 (292)
T ss_pred HHHcCCCEEEECCCcCCCCCHHHHHHH
Confidence 89999887433 255666555
No 41
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=89.71 E-value=1.8 Score=34.85 Aligned_cols=93 Identities=22% Similarity=0.211 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc-CCCCEEE----------ecCCcccc
Q 037554 7 LNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI-GDSDFVL----------ARADASFV 75 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~-~~~d~~I----------AGAD~ifv 75 (173)
.+..+..+.++++||.+||+-|...- ..+ . -+.+..|+..++.- .-.++++ +|||+|.+
T Consensus 31 ~~~~~~A~~~~~~GA~~l~v~~~~~~-----~~g-~----~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l 100 (217)
T cd00331 31 FDPVEIAKAYEKAGAAAISVLTEPKY-----FQG-S----LEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLL 100 (217)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCccc-----cCC-C----HHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEE
Confidence 46888999999999999999876431 111 1 14555555443110 0023333 99999986
Q ss_pred cCC-CCHHHHhhh-----h-c-CC---CCC---HHHHHhCCccEEEec
Q 037554 76 EAP-RNDNEANWV-----W-G-HT---LHT---PEELKAMGFHLTVHP 109 (173)
Q Consensus 76 ~g~-~~~e~i~~i-----~-g-~p---~~~---~~eL~~lGv~~v~~~ 109 (173)
... .+.++++.+ . | .+ ..+ .++..++|++.+.++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~~g~~~i~~t 148 (217)
T cd00331 101 IVAALDDEQLKELYELARELGMEVLVEVHDEEELERALALGAKIIGIN 148 (217)
T ss_pred eeccCCHHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHcCCCEEEEe
Confidence 443 233555555 1 3 11 123 467778999999877
No 42
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=89.51 E-value=2.7 Score=32.33 Aligned_cols=93 Identities=13% Similarity=0.075 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE---------ecCCcccccC
Q 037554 7 LNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL---------ARADASFVEA 77 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I---------AGAD~ifv~g 77 (173)
.+..+.++++.++|+..|||.+...+ -.+....+.+|+..... -+..+++ +|||++..+.
T Consensus 12 ~~~~~~l~~l~~~g~~~i~lr~~~~~----------~~~~~~~~~~i~~~~~~-~~~~l~~~~~~~~a~~~g~~~vh~~~ 80 (196)
T cd00564 12 EDLLEVVEAALKGGVTLVQLREKDLS----------ARELLELARALRELCRK-YGVPLIINDRVDLALAVGADGVHLGQ 80 (196)
T ss_pred chHHHHHHHHHhcCCCEEEEeCCCCC----------HHHHHHHHHHHHHHHHH-hCCeEEEeChHHHHHHcCCCEEecCc
Confidence 46778899999999999999986421 11222344455443331 2345666 8999887775
Q ss_pred C-CCHHHHhhh-h-----cCCCCC---HHHHHhCCccEEEech
Q 037554 78 P-RNDNEANWV-W-----GHTLHT---PEELKAMGFHLTVHPL 110 (173)
Q Consensus 78 ~-~~~e~i~~i-~-----g~p~~~---~~eL~~lGv~~v~~~~ 110 (173)
. .....++++ . |....| ..+..+.|++.+.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~g~~~~t~~~~~~~~~~g~d~i~~~~ 123 (196)
T cd00564 81 DDLPVAEARALLGPDLIIGVSTHSLEEALRAEELGADYVGFGP 123 (196)
T ss_pred ccCCHHHHHHHcCCCCEEEeeCCCHHHHHHHhhcCCCEEEECC
Confidence 3 234555554 1 211233 3456677999998753
No 43
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=89.29 E-value=2 Score=36.60 Aligned_cols=75 Identities=21% Similarity=0.207 Sum_probs=55.2
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCC-CCEEE----------------
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGD-SDFVL---------------- 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~-~d~~I---------------- 67 (173)
|...+.+.++.+++.|+.||.+==.+ +.-..++.+|-.+=++.++++..+ ..++.
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v~Gst--------GE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~ 90 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISVGGTS--------GEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKF 90 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECccC--------cccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHH
Confidence 45678899999999999999875444 345678999999999988876543 44554
Q ss_pred ---ecCCcccccCC----CCHHHHhhh
Q 037554 68 ---ARADASFVEAP----RNDNEANWV 87 (173)
Q Consensus 68 ---AGAD~ifv~g~----~~~e~i~~i 87 (173)
+|||++++..+ .+.+++...
T Consensus 91 A~~~Gad~v~v~pP~y~~~~~~~l~~~ 117 (294)
T TIGR02313 91 AEEAGADAAMVIVPYYNKPNQEALYDH 117 (294)
T ss_pred HHHcCCCEEEEcCccCCCCCHHHHHHH
Confidence 89999987544 245555544
No 44
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=89.20 E-value=1.9 Score=36.92 Aligned_cols=66 Identities=24% Similarity=0.365 Sum_probs=52.1
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCC-CCEEE----------------
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGD-SDFVL---------------- 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~-~d~~I---------------- 67 (173)
|-....+.++.+++.|+.||-+ ||.++.-...+.+|..+=++.++++..+ ..++.
T Consensus 23 D~~a~~~lv~~li~~Gv~gi~~--------~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~ 94 (299)
T COG0329 23 DEEALRRLVEFLIAAGVDGLVV--------LGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKH 94 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE--------CCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHH
Confidence 4467889999999999999986 4555556778999999999999998754 34444
Q ss_pred ---ecCCcccccCC
Q 037554 68 ---ARADASFVEAP 78 (173)
Q Consensus 68 ---AGAD~ifv~g~ 78 (173)
+|||+|++..+
T Consensus 95 a~~~Gad~il~v~P 108 (299)
T COG0329 95 AEKLGADGILVVPP 108 (299)
T ss_pred HHhcCCCEEEEeCC
Confidence 89999987554
No 45
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=89.01 E-value=3.2 Score=35.22 Aligned_cols=75 Identities=12% Similarity=0.056 Sum_probs=54.6
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCC-CCEEE----------------
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGD-SDFVL---------------- 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~-~d~~I---------------- 67 (173)
|.....+.++.+++.||.||.+== +++.-..++.+|..+=++.++++..+ ..+++
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~v~G--------stGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~~t~~ai~~a~~a 95 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALFAAG--------GTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGGNTSDAIEIARLA 95 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEEECC--------CCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCccHHHHHHHHHHH
Confidence 456788999999999999998644 44445688999999999988887543 34444
Q ss_pred --ecCCcccccCC----CCHHHHhhh
Q 037554 68 --ARADASFVEAP----RNDNEANWV 87 (173)
Q Consensus 68 --AGAD~ifv~g~----~~~e~i~~i 87 (173)
+|||++++-.+ .+.+++.+.
T Consensus 96 ~~~Gadav~~~pP~y~~~s~~~i~~~ 121 (296)
T TIGR03249 96 EKAGADGYLLLPPYLINGEQEGLYAH 121 (296)
T ss_pred HHhCCCEEEECCCCCCCCCHHHHHHH
Confidence 89998876433 355665554
No 46
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=88.93 E-value=2 Score=36.46 Aligned_cols=45 Identities=18% Similarity=0.016 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~ 60 (173)
++..+.+.++++.++|+.-|+|-|.++ +..+.++.+.+++.++..
T Consensus 145 ~~~~~~~~~~~~~~~G~~~i~l~DT~G-----------~~~P~~v~~l~~~l~~~~ 189 (280)
T cd07945 145 SPDYVFQLVDFLSDLPIKRIMLPDTLG-----------ILSPFETYTYISDMVKRY 189 (280)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCCC-----------CCCHHHHHHHHHHHHhhC
Confidence 567888999999999999999999874 456677888888777654
No 47
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=88.84 E-value=5.6 Score=33.84 Aligned_cols=75 Identities=13% Similarity=0.075 Sum_probs=55.0
Q ss_pred HHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE-----------------------
Q 037554 11 RTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL----------------------- 67 (173)
Q Consensus 11 rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I----------------------- 67 (173)
-+.+.++++|+..|-.-|...----||.++ .-++.++|+...++++++..+ .|+|
T Consensus 26 ~sA~i~~~aG~d~ilvGdSlgm~~lG~~~t-~~vtldem~~h~~aV~rg~~~-~~vv~DmPf~sy~~~e~a~~na~rl~~ 103 (263)
T TIGR00222 26 SFAKLFADAGVDVILVGDSLGMVVLGHDST-LPVTVADMIYHTAAVKRGAPN-CLIVTDLPFMSYATPEQALKNAARVMQ 103 (263)
T ss_pred HHHHHHHHcCCCEEEECccHhHHhcCCCCC-CCcCHHHHHHHHHHHHhhCCC-ceEEeCCCcCCCCCHHHHHHHHHHHHH
Confidence 356778899999999999876444455443 348999999999999988654 3444
Q ss_pred -ecCCcccccCCCC-HHHHhhh
Q 037554 68 -ARADASFVEAPRN-DNEANWV 87 (173)
Q Consensus 68 -AGAD~ifv~g~~~-~e~i~~i 87 (173)
+|||+|-+++-.. .+.++.+
T Consensus 104 eaGa~aVkiEgg~~~~~~i~~l 125 (263)
T TIGR00222 104 ETGANAVKLEGGEWLVETVQML 125 (263)
T ss_pred HhCCeEEEEcCcHhHHHHHHHH
Confidence 8999999998533 2334444
No 48
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=88.79 E-value=3.4 Score=34.56 Aligned_cols=75 Identities=20% Similarity=0.262 Sum_probs=54.2
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCC-CCEEE----------------
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGD-SDFVL---------------- 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~-~d~~I---------------- 67 (173)
|.....+.++.+++.|+.||-+=-.+ +.-...+.+|..+=++.+++...+ ..+++
T Consensus 19 D~~~~~~~i~~l~~~Gv~gl~v~Gst--------GE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~ 90 (284)
T cd00950 19 DFDALERLIEFQIENGTDGLVVCGTT--------GESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKR 90 (284)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCC--------cchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHH
Confidence 34667889999999999999875433 334578999999999988887543 34444
Q ss_pred ---ecCCcccccCC----CCHHHHhhh
Q 037554 68 ---ARADASFVEAP----RNDNEANWV 87 (173)
Q Consensus 68 ---AGAD~ifv~g~----~~~e~i~~i 87 (173)
+|||+|++..+ .+.+++.+.
T Consensus 91 a~~~G~d~v~~~~P~~~~~~~~~l~~~ 117 (284)
T cd00950 91 AEKAGADAALVVTPYYNKPSQEGLYAH 117 (284)
T ss_pred HHHcCCCEEEEcccccCCCCHHHHHHH
Confidence 99998887433 255666555
No 49
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=88.66 E-value=3.9 Score=30.92 Aligned_cols=90 Identities=22% Similarity=0.139 Sum_probs=55.7
Q ss_pred HHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEEecCCcccccCCC--CHHHHhhh-
Q 037554 11 RTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVLARADASFVEAPR--NDNEANWV- 87 (173)
Q Consensus 11 rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~IAGAD~ifv~g~~--~~e~i~~i- 87 (173)
..+..+.++ +|+.+.|.- ..+|++++++ +|++ .+||+|.+-++. +.+.+..+
T Consensus 20 ~iv~~~l~~--~GfeVi~lg-----------~~~s~e~~v~---aa~e---------~~adii~iSsl~~~~~~~~~~~~ 74 (132)
T TIGR00640 20 KVIATAYAD--LGFDVDVGP-----------LFQTPEEIAR---QAVE---------ADVHVVGVSSLAGGHLTLVPALR 74 (132)
T ss_pred HHHHHHHHh--CCcEEEECC-----------CCCCHHHHHH---HHHH---------cCCCEEEEcCchhhhHHHHHHHH
Confidence 344555443 577777753 2367888774 4443 245555555542 33333333
Q ss_pred ----h-----------c-CCCCCHHHHHhCCccEEEechHHHHHHHHHHHHHHH
Q 037554 88 ----W-----------G-HTLHTPEELKAMGFHLTVHPLTALYASARALVDVLK 125 (173)
Q Consensus 88 ----~-----------g-~p~~~~~eL~~lGv~~v~~~~~~~~aa~~a~~~~~~ 125 (173)
+ | .|.-..++|.++|+.+++.+.+.....+.++.+...
T Consensus 75 ~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~~ 128 (132)
T TIGR00640 75 KELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKLR 128 (132)
T ss_pred HHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 1 2 344568899999999999998888888777776443
No 50
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=88.46 E-value=2.2 Score=37.55 Aligned_cols=45 Identities=13% Similarity=0.076 Sum_probs=37.5
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~ 60 (173)
++..+.+.++++.++|+.-|+|-|.++ +..+.+..+.++++++..
T Consensus 195 ~~~~l~~~~~~~~~~Gad~I~l~DT~G-----------~a~P~~v~~lv~~l~~~~ 239 (347)
T PLN02746 195 PPSKVAYVAKELYDMGCYEISLGDTIG-----------VGTPGTVVPMLEAVMAVV 239 (347)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCCcC-----------CcCHHHHHHHHHHHHHhC
Confidence 467789999999999999999999985 456778888888887654
No 51
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=88.29 E-value=3.3 Score=35.49 Aligned_cols=109 Identities=16% Similarity=0.046 Sum_probs=64.0
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCC-CCccCCCCCCCccc-CHHHHHHHHHHHHHhcCCCCEEE---------------
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQS-WPKKCGHMHGKQII-PAEEHAAKIASARDAIGDSDFVL--------------- 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~-~pKrcg~~~g~~l~-~~ee~~~kI~Aa~~a~~~~d~~I--------------- 67 (173)
++.++.+.++.+.++|+.||.|-=.. .+|++....|..+. .++-+.+=+++++++. +..+.+
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~-~~pv~vKir~g~~~~~~~~~~ 151 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAV-DIPVTVKIRIGWDDAHINAVE 151 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhc-CCCEEEEEEcccCCCcchHHH
Confidence 67899999999999999999884221 13333333344443 4555555555555432 122222
Q ss_pred -------ecCCcccccCCC---------CHHHHhhhh---cCC---------CCCHHHHH-hCCccEEEechHHHH
Q 037554 68 -------ARADASFVEAPR---------NDNEANWVW---GHT---------LHTPEELK-AMGFHLTVHPLTALY 114 (173)
Q Consensus 68 -------AGAD~ifv~g~~---------~~e~i~~i~---g~p---------~~~~~eL~-~lGv~~v~~~~~~~~ 114 (173)
+|+|.|.+++.. +.+.++++. ..| .-++.++- ..|++.|.+|-.++.
T Consensus 152 ~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~ 227 (319)
T TIGR00737 152 AARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALG 227 (319)
T ss_pred HHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhh
Confidence 899999887632 233344441 122 12344554 678999999966653
No 52
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=88.04 E-value=4.1 Score=34.78 Aligned_cols=75 Identities=15% Similarity=0.139 Sum_probs=54.5
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCC-CCEEE----------------
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGD-SDFVL---------------- 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~-~d~~I---------------- 67 (173)
|.....+.++.+++.||.||.+==.+ +.-..++.+|-.+-++.++++..+ ..+++
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~~~Gst--------GE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a 97 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALFAAGGT--------GEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAA 97 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcCC--------cCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHH
Confidence 34668899999999999999864443 345678999999999988876543 44454
Q ss_pred --ecCCcccccCC----CCHHHHhhh
Q 037554 68 --ARADASFVEAP----RNDNEANWV 87 (173)
Q Consensus 68 --AGAD~ifv~g~----~~~e~i~~i 87 (173)
+|||++.+..+ .+.+++...
T Consensus 98 ~~~Gadav~~~pP~y~~~~~~~i~~~ 123 (303)
T PRK03620 98 ERAGADGILLLPPYLTEAPQEGLAAH 123 (303)
T ss_pred HHhCCCEEEECCCCCCCCCHHHHHHH
Confidence 89999876443 255666555
No 53
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=88.02 E-value=1.9 Score=35.03 Aligned_cols=47 Identities=26% Similarity=0.348 Sum_probs=36.9
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCC
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGD 62 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~ 62 (173)
++..+.+.++.+.++|+..|.|-|..+ +.+|++....|++.++...+
T Consensus 135 ~~~~~~~~~~~~~~~g~~~i~l~Dt~G-----------~~~P~~v~~lv~~~~~~~~~ 181 (237)
T PF00682_consen 135 DPEELLELAEALAEAGADIIYLADTVG-----------IMTPEDVAELVRALREALPD 181 (237)
T ss_dssp SHHHHHHHHHHHHHHT-SEEEEEETTS------------S-HHHHHHHHHHHHHHSTT
T ss_pred cHHHHHHHHHHHHHcCCeEEEeeCccC-----------CcCHHHHHHHHHHHHHhccC
Confidence 467788999999999999999999875 56778888888888877543
No 54
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=87.99 E-value=0.77 Score=38.98 Aligned_cols=65 Identities=15% Similarity=0.043 Sum_probs=50.5
Q ss_pred HHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE------------------------
Q 037554 12 TVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL------------------------ 67 (173)
Q Consensus 12 tv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I------------------------ 67 (173)
+.+.++++|+..|-.-|+..--..||.. ...++.+||+..+++++++...+ ++|
T Consensus 27 sArl~e~aG~d~i~vGds~~~~~lG~~D-t~~vtl~em~~h~~~V~r~~~~p-~vvaD~pfg~y~~~~~~av~~a~r~~~ 104 (264)
T PRK00311 27 FAKLFDEAGVDVILVGDSLGMVVLGYDS-TLPVTLDDMIYHTKAVARGAPRA-LVVADMPFGSYQASPEQALRNAGRLMK 104 (264)
T ss_pred HHHHHHHcCCCEEEECHHHHHHHcCCCC-CCCcCHHHHHHHHHHHHhcCCCC-cEEEeCCCCCccCCHHHHHHHHHHHHH
Confidence 5577899999999999886544456543 46789999999999998876443 333
Q ss_pred -ecCCcccccCC
Q 037554 68 -ARADASFVEAP 78 (173)
Q Consensus 68 -AGAD~ifv~g~ 78 (173)
+||++|.+++-
T Consensus 105 ~aGa~aVkiEdg 116 (264)
T PRK00311 105 EAGAHAVKLEGG 116 (264)
T ss_pred HhCCeEEEEcCc
Confidence 89999999874
No 55
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=87.81 E-value=2.5 Score=35.55 Aligned_cols=45 Identities=9% Similarity=0.025 Sum_probs=36.8
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~ 60 (173)
++..+.+.++.+.++|+..|+|-|..+ +..|+++.+.+++.++..
T Consensus 136 ~~~~~~~~~~~~~~~g~~~i~l~DT~G-----------~~~P~~v~~lv~~l~~~~ 180 (266)
T cd07944 136 SDEELLELLELVNEIKPDVFYIVDSFG-----------SMYPEDIKRIISLLRSNL 180 (266)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecCCC-----------CCCHHHHHHHHHHHHHhc
Confidence 467788899999999999999999874 566788888888887654
No 56
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=87.74 E-value=3 Score=35.28 Aligned_cols=45 Identities=11% Similarity=0.106 Sum_probs=36.3
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~ 60 (173)
++..+.+.++.+.++|+.-|+|-|.++ +..|.++.+.|++.++.-
T Consensus 147 ~~~~~~~~~~~~~~~Ga~~i~l~DT~G-----------~~~P~~v~~lv~~l~~~~ 191 (274)
T cd07938 147 PPERVAEVAERLLDLGCDEISLGDTIG-----------VATPAQVRRLLEAVLERF 191 (274)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCC-----------ccCHHHHHHHHHHHHHHC
Confidence 346677888999999999999999875 456788888888887653
No 57
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=87.63 E-value=8.5 Score=33.37 Aligned_cols=111 Identities=14% Similarity=0.062 Sum_probs=68.3
Q ss_pred CC-ChHHHHHHHHHHHHhCceEEEeccCCC-CccCCCCCCCcc-cCHHHHHHHHHHHHHhcCCCCEEE------------
Q 037554 3 GG-NALNVQRTVKDLVAAGAAGCFLEDQSW-PKKCGHMHGKQI-IPAEEHAAKIASARDAIGDSDFVL------------ 67 (173)
Q Consensus 3 yG-~~~~v~rtv~~~~~aGvagi~iEDq~~-pKrcg~~~g~~l-~~~ee~~~kI~Aa~~a~~~~d~~I------------ 67 (173)
+| ++..+.+.++.+.+.|+.+|.|-=... +|.+....|..| -.++...+=|++++++.. ..+.+
T Consensus 62 ~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~-~PVsvKiR~g~~~~~~~ 140 (318)
T TIGR00742 62 GGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVN-IPVTVKHRIGIDPLDSY 140 (318)
T ss_pred ccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhC-CCeEEEEecCCCCcchH
Confidence 35 688999999999999999998866542 222211123333 356666666666666532 11222
Q ss_pred ------------ecCCcccccCCC-----------------CHHHHhhh-h---cCC------CCCHHHHHhC--CccEE
Q 037554 68 ------------ARADASFVEAPR-----------------NDNEANWV-W---GHT------LHTPEELKAM--GFHLT 106 (173)
Q Consensus 68 ------------AGAD~ifv~g~~-----------------~~e~i~~i-~---g~p------~~~~~eL~~l--Gv~~v 106 (173)
+|+|.|-|++-+ +.+.+.++ . ..| ..|.++..++ |++-|
T Consensus 141 ~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~NGdI~s~~da~~~l~g~dgV 220 (318)
T TIGR00742 141 EFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEINGGIKNSEQIKQHLSHVDGV 220 (318)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEECCcCCHHHHHHHHhCCCEE
Confidence 999999999854 22344444 1 123 2566555544 89999
Q ss_pred EechHHHH
Q 037554 107 VHPLTALY 114 (173)
Q Consensus 107 ~~~~~~~~ 114 (173)
..|-.++.
T Consensus 221 MigRgal~ 228 (318)
T TIGR00742 221 MVGREAYE 228 (318)
T ss_pred EECHHHHh
Confidence 99866654
No 58
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=87.59 E-value=1.6 Score=38.48 Aligned_cols=93 Identities=20% Similarity=0.234 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhCceEEEe-ccCCCCccCCCCCCCcccCHHHHHHHHHHH-HHhc-CCCCEEE----------ecCCcc
Q 037554 7 LNVQRTVKDLVAAGAAGCFL-EDQSWPKKCGHMHGKQIIPAEEHAAKIASA-RDAI-GDSDFVL----------ARADAS 73 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~i-EDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa-~~a~-~~~d~~I----------AGAD~i 73 (173)
.+....++.|++.||++|.+ -|.. |+.| + -+...++|.+ +..- -..||+| +|||+|
T Consensus 139 ~dp~~iA~~Ye~~GA~aISVLTd~~------~F~G----s-~e~L~~vr~~~v~lPvLrKDFIID~yQI~eAr~~GADAV 207 (338)
T PLN02460 139 FDPVEIAQAYEKGGAACLSVLTDEK------YFQG----S-FENLEAIRNAGVKCPLLCKEFIVDAWQIYYARSKGADAI 207 (338)
T ss_pred CCHHHHHHHHHhCCCcEEEEecCcC------cCCC----C-HHHHHHHHHcCCCCCEeeccccCCHHHHHHHHHcCCCcH
Confidence 46778889999999999975 4433 2233 2 2445555554 3221 1368888 899999
Q ss_pred ccc-CCCCHHHHhhh-----h-c-CC---CCCHHHH---HhC-CccEEEech
Q 037554 74 FVE-APRNDNEANWV-----W-G-HT---LHTPEEL---KAM-GFHLTVHPL 110 (173)
Q Consensus 74 fv~-g~~~~e~i~~i-----~-g-~p---~~~~~eL---~~l-Gv~~v~~~~ 110 (173)
..- ++-+.++++.+ . | .+ ..+.+|| -++ |.+.|-+-+
T Consensus 208 LLIaaiL~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIGINN 259 (338)
T PLN02460 208 LLIAAVLPDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIGINN 259 (338)
T ss_pred HHHHHhCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeC
Confidence 853 45577777777 2 5 44 3676666 455 778776654
No 59
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=87.22 E-value=1.7 Score=38.20 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=55.8
Q ss_pred HHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE-----------------------
Q 037554 11 RTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL----------------------- 67 (173)
Q Consensus 11 rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I----------------------- 67 (173)
-+.+.+.++|+..|-+-|...----||.+. .-++.|+|+...++++++... .|+|
T Consensus 46 ~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T-~~Vtld~mi~H~~aV~Rga~~-a~vVaDmPfgSY~~s~e~av~nA~rl~ 123 (332)
T PLN02424 46 PSAVHVDSAGIDVCLVGDSAAMVVHGHDTT-LPITLDEMLVHCRAVARGANR-PLLVGDLPFGSYESSTDQAVESAVRML 123 (332)
T ss_pred HHHHHHHHcCCCEEEECCcHHHHhcCCCCC-CCcCHHHHHHHHHHHhccCCC-CEEEeCCCCCCCCCCHHHHHHHHHHHH
Confidence 356778999999999999976444455443 358999999999999887654 3555
Q ss_pred --ecCCcccccCC-C-CHHHHhhh
Q 037554 68 --ARADASFVEAP-R-NDNEANWV 87 (173)
Q Consensus 68 --AGAD~ifv~g~-~-~~e~i~~i 87 (173)
+|||+|-++|- . ..+.++++
T Consensus 124 ~eaGa~aVKlEGg~~~~~~~I~~l 147 (332)
T PLN02424 124 KEGGMDAVKLEGGSPSRVTAAKAI 147 (332)
T ss_pred HHhCCcEEEECCCcHHHHHHHHHH
Confidence 89999999986 2 23556655
No 60
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=87.11 E-value=2.9 Score=35.17 Aligned_cols=46 Identities=11% Similarity=0.090 Sum_probs=35.2
Q ss_pred CC-ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHh
Q 037554 3 GG-NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDA 59 (173)
Q Consensus 3 yG-~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a 59 (173)
|+ ++..+.+.++++.++|+..|+|-|..+ +..|++..+.++.+++.
T Consensus 136 ~r~~~~~l~~~~~~~~~~g~~~i~l~Dt~G-----------~~~P~~v~~~~~~~~~~ 182 (262)
T cd07948 136 FRSDLVDLLRVYRAVDKLGVNRVGIADTVG-----------IATPRQVYELVRTLRGV 182 (262)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECCcCC-----------CCCHHHHHHHHHHHHHh
Confidence 45 357788889999999999999999874 45667777777777654
No 61
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=87.10 E-value=2.5 Score=39.06 Aligned_cols=45 Identities=13% Similarity=0.206 Sum_probs=37.8
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~ 60 (173)
++.-+.+.+++++++||.-|+|-|.++ +..+++..+.|++.++.-
T Consensus 153 t~e~~~~~a~~l~~~Gad~I~IkDtaG-----------ll~P~~~~~LV~~Lk~~~ 197 (499)
T PRK12330 153 TVEGFVEQAKRLLDMGADSICIKDMAA-----------LLKPQPAYDIVKGIKEAC 197 (499)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCcc-----------CCCHHHHHHHHHHHHHhC
Confidence 356677889999999999999999874 677888888899888764
No 62
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=86.91 E-value=3.2 Score=35.21 Aligned_cols=64 Identities=9% Similarity=0.056 Sum_probs=49.5
Q ss_pred HHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE---------------ecCCcccc
Q 037554 11 RTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL---------------ARADASFV 75 (173)
Q Consensus 11 rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I---------------AGAD~ifv 75 (173)
..++.+..+|-..|.|+=+= ..++.++...-|+++.... ...++ +||++|.+
T Consensus 30 ~~~E~~a~~GfD~v~iD~EH-----------g~~~~~~l~~~i~a~~~~g--~~~lVRvp~~~~~~i~r~LD~GA~GIiv 96 (267)
T PRK10128 30 YMAEIAATSGYDWLLIDGEH-----------APNTIQDLYHQLQAIAPYA--SQPVIRPVEGSKPLIKQVLDIGAQTLLI 96 (267)
T ss_pred HHHHHHHHcCCCEEEEcccc-----------CCCCHHHHHHHHHHHHhcC--CCeEEECCCCCHHHHHHHhCCCCCeeEe
Confidence 45566778888888887652 2468888888888887542 33344 99999999
Q ss_pred cCCCCHHHHhhh
Q 037554 76 EAPRNDNEANWV 87 (173)
Q Consensus 76 ~g~~~~e~i~~i 87 (173)
|-+.|.|+.+++
T Consensus 97 P~V~saeeA~~~ 108 (267)
T PRK10128 97 PMVDTAEQARQV 108 (267)
T ss_pred cCcCCHHHHHHH
Confidence 999999999988
No 63
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=86.67 E-value=1.2 Score=38.12 Aligned_cols=43 Identities=21% Similarity=0.146 Sum_probs=33.2
Q ss_pred ecCCcccccCCCCHHHHhhh------------h--c-CCCCCHHHHHhCCccEEEechH
Q 037554 68 ARADASFVEAPRNDNEANWV------------W--G-HTLHTPEELKAMGFHLTVHPLT 111 (173)
Q Consensus 68 AGAD~ifv~g~~~~e~i~~i------------~--g-~p~~~~~eL~~lGv~~v~~~~~ 111 (173)
||||.|+..-. +++++++. + | --.-++.++++.||+.+|.|.-
T Consensus 207 agaDiImLDNm-~~e~~~~av~~l~~~~~~~lEaSGgIt~~ni~~yA~tGVD~IS~gal 264 (280)
T COG0157 207 AGADIIMLDNM-SPEELKEAVKLLGLAGRALLEASGGITLENIREYAETGVDVISVGAL 264 (280)
T ss_pred cCCCEEEecCC-CHHHHHHHHHHhccCCceEEEEeCCCCHHHHHHHhhcCCCEEEeCcc
Confidence 99999999875 67777766 1 2 2235789999999999999843
No 64
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=86.59 E-value=4.1 Score=33.96 Aligned_cols=75 Identities=20% Similarity=0.243 Sum_probs=55.3
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCC-CCEEE----------------
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGD-SDFVL---------------- 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~-~d~~I---------------- 67 (173)
|.....+.++.+++.|+.||.+=-.+ +.-...+.+|..+-++.++++..+ ..+++
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~~Gst--------GE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~ 87 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVVLGTT--------GEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARH 87 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCC--------cccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHH
Confidence 45678899999999999999875554 344678999999999999887643 34444
Q ss_pred ---ecCCcccccCC----CCHHHHhhh
Q 037554 68 ---ARADASFVEAP----RNDNEANWV 87 (173)
Q Consensus 68 ---AGAD~ifv~g~----~~~e~i~~i 87 (173)
+|||+|++..+ .+.+++.+.
T Consensus 88 a~~~Gad~v~v~pP~y~~~~~~~~~~~ 114 (281)
T cd00408 88 AEEAGADGVLVVPPYYNKPSQEGIVAH 114 (281)
T ss_pred HHHcCCCEEEECCCcCCCCCHHHHHHH
Confidence 89999887443 255665554
No 65
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=86.58 E-value=3.9 Score=34.16 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=35.4
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~ 60 (173)
++..+...++++.++|+..|.|-|.++ +..+++....+++.++.-
T Consensus 141 ~~~~~~~~~~~~~~~G~~~i~l~DT~G-----------~~~P~~v~~lv~~l~~~~ 185 (268)
T cd07940 141 DLDFLIEVVEAAIEAGATTINIPDTVG-----------YLTPEEFGELIKKLKENV 185 (268)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCC-----------CCCHHHHHHHHHHHHHhC
Confidence 456778888999999999999999874 456677877888777654
No 66
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=86.51 E-value=1.1 Score=37.91 Aligned_cols=65 Identities=22% Similarity=0.096 Sum_probs=50.5
Q ss_pred HHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE------------------------
Q 037554 12 TVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL------------------------ 67 (173)
Q Consensus 12 tv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I------------------------ 67 (173)
+.+.++++|+..|-.-|...--..||.. ...++.+||+..+++++++... .|+|
T Consensus 24 sA~l~e~aG~d~i~vGds~~~~~lG~pD-t~~vtl~em~~~~~~V~r~~~~-p~viaD~~fg~y~~~~~~av~~a~r~~~ 101 (254)
T cd06557 24 TAKLADEAGVDVILVGDSLGMVVLGYDS-TLPVTLDEMIYHTRAVRRGAPR-ALVVADMPFGSYQTSPEQALRNAARLMK 101 (254)
T ss_pred HHHHHHHcCCCEEEECHHHHHHHcCCCC-CCCcCHHHHHHHHHHHHhcCCC-CeEEEeCCCCcccCCHHHHHHHHHHHHH
Confidence 4577899999999998886544456543 3578999999999998887654 3454
Q ss_pred -ecCCcccccCC
Q 037554 68 -ARADASFVEAP 78 (173)
Q Consensus 68 -AGAD~ifv~g~ 78 (173)
+||++|.+++-
T Consensus 102 ~aGa~aVkiEd~ 113 (254)
T cd06557 102 EAGADAVKLEGG 113 (254)
T ss_pred HhCCeEEEEcCc
Confidence 89999999874
No 67
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=86.50 E-value=2.8 Score=36.58 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I 67 (173)
++..+.+.++.+.++|+..|.|-|..+ ...+++..++++++++... +++-|
T Consensus 142 ~~e~l~~~a~~~~~~Ga~~i~i~DT~G-----------~~~P~~v~~~v~~l~~~l~-~~i~i 192 (337)
T PRK08195 142 PPEKLAEQAKLMESYGAQCVYVVDSAG-----------ALLPEDVRDRVRALRAALK-PDTQV 192 (337)
T ss_pred CHHHHHHHHHHHHhCCCCEEEeCCCCC-----------CCCHHHHHHHHHHHHHhcC-CCCeE
Confidence 467888999999999999999999874 4677899999999887652 34444
No 68
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=86.08 E-value=1.2 Score=37.56 Aligned_cols=70 Identities=24% Similarity=0.299 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhCceEEEe-ccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc-CCCCEEE----------ecCCccc
Q 037554 7 LNVQRTVKDLVAAGAAGCFL-EDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI-GDSDFVL----------ARADASF 74 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~i-EDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~-~~~d~~I----------AGAD~if 74 (173)
.++....+.|+++||++|.+ -|..+ +.| + -+....++.+..-- -..||+| +|||+|.
T Consensus 68 ~d~~~~a~~y~~~GA~aiSVlTe~~~------F~G----s-~~dL~~v~~~~~~PvL~KDFIid~~QI~eA~~~GADaVL 136 (254)
T PF00218_consen 68 FDPAEIAKAYEEAGAAAISVLTEPKF------FGG----S-LEDLRAVRKAVDLPVLRKDFIIDPYQIYEARAAGADAVL 136 (254)
T ss_dssp -SHHHHHHHHHHTT-SEEEEE--SCC------CHH----H-HHHHHHHHHHSSS-EEEES---SHHHHHHHHHTT-SEEE
T ss_pred CCHHHHHHHHHhcCCCEEEEECCCCC------CCC----C-HHHHHHHHHHhCCCcccccCCCCHHHHHHHHHcCCCEee
Confidence 57888899999999999975 34321 112 1 13333333332110 0258888 8999976
Q ss_pred c-cCCCCHHHHhhh
Q 037554 75 V-EAPRNDNEANWV 87 (173)
Q Consensus 75 v-~g~~~~e~i~~i 87 (173)
. -.+-+.+++..+
T Consensus 137 LI~~~L~~~~l~~l 150 (254)
T PF00218_consen 137 LIAAILSDDQLEEL 150 (254)
T ss_dssp EEGGGSGHHHHHHH
T ss_pred hhHHhCCHHHHHHH
Confidence 5 344455555555
No 69
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=85.81 E-value=3.6 Score=32.40 Aligned_cols=92 Identities=16% Similarity=0.124 Sum_probs=55.6
Q ss_pred ChHHHHHHHHHHHHhCceEEEe--ccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCE----EE-----------
Q 037554 5 NALNVQRTVKDLVAAGAAGCFL--EDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDF----VL----------- 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~i--EDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~----~I----------- 67 (173)
++.+..+.++.+.++|+.-||+ -|..+- .+.. .+ -+.+++|+.. .+..+ ++
T Consensus 9 ~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~------~~~~-~~-~~~v~~i~~~----~~~~v~v~lm~~~~~~~~~~~~ 76 (210)
T TIGR01163 9 DFARLGEEVKAVEEAGADWIHVDVMDGHFV------PNLT-FG-PPVLEALRKY----TDLPIDVHLMVENPDRYIEDFA 76 (210)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCC------CCcc-cC-HHHHHHHHhc----CCCcEEEEeeeCCHHHHHHHHH
Confidence 4578899999999999999999 565541 1112 22 2566666632 12232 22
Q ss_pred -ecCCcccccCCCCHHHHhhh---h--c-------CCCCCHHHHHhC--CccEEEe
Q 037554 68 -ARADASFVEAPRNDNEANWV---W--G-------HTLHTPEELKAM--GFHLTVH 108 (173)
Q Consensus 68 -AGAD~ifv~g~~~~e~i~~i---~--g-------~p~~~~~eL~~l--Gv~~v~~ 108 (173)
+|||+|.+|+..+.+....+ . + +|..+.+.++++ +++.+.+
T Consensus 77 ~~gadgv~vh~~~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~ 132 (210)
T TIGR01163 77 EAGADIITVHPEASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLL 132 (210)
T ss_pred HcCCCEEEEccCCchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEE
Confidence 89999999886543332222 1 2 244456666665 6677665
No 70
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=85.61 E-value=3.8 Score=34.41 Aligned_cols=64 Identities=14% Similarity=0.040 Sum_probs=48.6
Q ss_pred HHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE---------------ecCCcccc
Q 037554 11 RTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL---------------ARADASFV 75 (173)
Q Consensus 11 rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I---------------AGAD~ifv 75 (173)
..++.+..+|-..|.|+=+= ...+.+++..-|+|+.... ...++ +||++|++
T Consensus 31 ~~~e~~a~~G~D~v~iD~EH-----------g~~~~~~~~~~i~a~~~~g--~~~lVRvp~~~~~~i~r~LD~Ga~giiv 97 (256)
T PRK10558 31 ITTEVLGLAGFDWLVLDGEH-----------APNDVSTFIPQLMALKGSA--SAPVVRVPTNEPVIIKRLLDIGFYNFLI 97 (256)
T ss_pred HHHHHHHhcCCCEEEEcccc-----------CCCCHHHHHHHHHHHhhcC--CCcEEECCCCCHHHHHHHhCCCCCeeee
Confidence 45566778888888886652 2468888888888876542 23333 99999999
Q ss_pred cCCCCHHHHhhh
Q 037554 76 EAPRNDNEANWV 87 (173)
Q Consensus 76 ~g~~~~e~i~~i 87 (173)
|-++|.|+++++
T Consensus 98 P~v~tae~a~~~ 109 (256)
T PRK10558 98 PFVETAEEARRA 109 (256)
T ss_pred cCcCCHHHHHHH
Confidence 999999999988
No 71
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=85.42 E-value=14 Score=30.22 Aligned_cols=87 Identities=11% Similarity=0.032 Sum_probs=52.6
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCC-CCEEE----------------
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGD-SDFVL---------------- 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~-~d~~I---------------- 67 (173)
++.++...++.+.+.|+--+-|-=.+ | ...+-|++.++...+ |+++|
T Consensus 23 ~~~~a~~~~~al~~~Gi~~iEit~~~-~---------------~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~ 86 (213)
T PRK06552 23 SKEEALKISLAVIKGGIKAIEVTYTN-P---------------FASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAIL 86 (213)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCC-c---------------cHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHH
Confidence 45778888999999999988775543 1 233444444443332 57888
Q ss_pred ecCCcccccCCCCHHHHhhhh--c---CC-CCCH---HHHHhCCccEEEe
Q 037554 68 ARADASFVEAPRNDNEANWVW--G---HT-LHTP---EELKAMGFHLTVH 108 (173)
Q Consensus 68 AGAD~ifv~g~~~~e~i~~i~--g---~p-~~~~---~eL~~lGv~~v~~ 108 (173)
+||+-|+-|+. +++.++... + .| ..|+ .+..++|++.+-+
T Consensus 87 aGA~FivsP~~-~~~v~~~~~~~~i~~iPG~~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 87 AGAQFIVSPSF-NRETAKICNLYQIPYLPGCMTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred cCCCEEECCCC-CHHHHHHHHHcCCCEECCcCCHHHHHHHHHcCCCEEEE
Confidence 88888877763 555544441 3 23 2333 3345577777665
No 72
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=85.14 E-value=3.5 Score=37.85 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHH
Q 037554 9 VQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARD 58 (173)
Q Consensus 9 v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~ 58 (173)
..+.+++++++||..|+|-|..+ +..+++..+.|++.++
T Consensus 165 ~~~~a~~l~~~Gad~I~IkDtaG-----------~l~P~~v~~Lv~alk~ 203 (468)
T PRK12581 165 YLSLVKELVEMGADSICIKDMAG-----------ILTPKAAKELVSGIKA 203 (468)
T ss_pred HHHHHHHHHHcCCCEEEECCCCC-----------CcCHHHHHHHHHHHHh
Confidence 67888999999999999999874 6778899999998876
No 73
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=85.02 E-value=3.8 Score=37.34 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc
Q 037554 6 ALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60 (173)
Q Consensus 6 ~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~ 60 (173)
+.-+.+.+++++++||.-|+|-|.++ +..+.+..+.|++.++.-
T Consensus 153 ~~~~~~~a~~l~~~Gad~I~i~Dt~G-----------~l~P~~v~~lv~alk~~~ 196 (448)
T PRK12331 153 IDYFVKLAKEMQEMGADSICIKDMAG-----------ILTPYVAYELVKRIKEAV 196 (448)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCC-----------CCCHHHHHHHHHHHHHhc
Confidence 45677889999999999999999874 567788888888888764
No 74
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=85.01 E-value=4.4 Score=33.89 Aligned_cols=64 Identities=14% Similarity=0.039 Sum_probs=49.3
Q ss_pred HHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE---------------ecCCcccc
Q 037554 11 RTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL---------------ARADASFV 75 (173)
Q Consensus 11 rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I---------------AGAD~ifv 75 (173)
..++.+..+|-..|.|+=+= ..++.++...-|+|+.... ...++ +||++|.+
T Consensus 24 ~~~e~~a~~G~D~v~iD~EH-----------g~~~~~~~~~~~~a~~~~g--~~~~VRvp~~~~~~i~r~LD~Ga~gIiv 90 (249)
T TIGR03239 24 ITTEVLGLAGFDWLLLDGEH-----------APNDVLTFIPQLMALKGSA--SAPVVRPPWNEPVIIKRLLDIGFYNFLI 90 (249)
T ss_pred HHHHHHHhcCCCEEEEeccc-----------CCCCHHHHHHHHHHHhhcC--CCcEEECCCCCHHHHHHHhcCCCCEEEe
Confidence 45566778898888887663 2568888888888876542 23344 99999999
Q ss_pred cCCCCHHHHhhh
Q 037554 76 EAPRNDNEANWV 87 (173)
Q Consensus 76 ~g~~~~e~i~~i 87 (173)
|-++|.|+++++
T Consensus 91 P~v~taeea~~~ 102 (249)
T TIGR03239 91 PFVESAEEAERA 102 (249)
T ss_pred cCcCCHHHHHHH
Confidence 999999999988
No 75
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=84.86 E-value=3.9 Score=35.67 Aligned_cols=51 Identities=8% Similarity=0.171 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I 67 (173)
++..+.+.++.++++|+..|.|-|..+ ...+++..+++++.++... +++-|
T Consensus 141 ~~e~l~~~a~~~~~~Ga~~i~i~DT~G-----------~~~P~~v~~~v~~l~~~l~-~~i~i 191 (333)
T TIGR03217 141 PPEKLAEQAKLMESYGADCVYIVDSAG-----------AMLPDDVRDRVRALKAVLK-PETQV 191 (333)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEccCCC-----------CCCHHHHHHHHHHHHHhCC-CCceE
Confidence 467888999999999999999999874 5677899999999887653 34334
No 76
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=84.64 E-value=3.9 Score=37.47 Aligned_cols=44 Identities=9% Similarity=0.158 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc
Q 037554 6 ALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60 (173)
Q Consensus 6 ~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~ 60 (173)
+..+.+.+++++++||.-|+|-|.++ +..+.+..+.|++.++.-
T Consensus 152 ~e~~~~~a~~l~~~Gad~I~i~Dt~G-----------~l~P~~v~~Lv~~lk~~~ 195 (467)
T PRK14041 152 LEYYLEFARELVDMGVDSICIKDMAG-----------LLTPKRAYELVKALKKKF 195 (467)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccC-----------CcCHHHHHHHHHHHHHhc
Confidence 35678899999999999999999874 567788888888887664
No 77
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=84.50 E-value=6.9 Score=32.87 Aligned_cols=75 Identities=20% Similarity=0.199 Sum_probs=52.8
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCC-CCEEE----------------
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGD-SDFVL---------------- 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~-~d~~I---------------- 67 (173)
|.....+.++.+++.|+.||-+=-.+ +.-..++.+|..+=++.+++...+ ..+++
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~~Gst--------GE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~ 91 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVVLGST--------GEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARH 91 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEESSTT--------TTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCC--------cccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHH
Confidence 34667899999999999999875544 334678999999999998887653 33444
Q ss_pred ---ecCCcccccCC----CCHHHHhhh
Q 037554 68 ---ARADASFVEAP----RNDNEANWV 87 (173)
Q Consensus 68 ---AGAD~ifv~g~----~~~e~i~~i 87 (173)
+|||++++..+ .+.+++.+.
T Consensus 92 a~~~Gad~v~v~~P~~~~~s~~~l~~y 118 (289)
T PF00701_consen 92 AQDAGADAVLVIPPYYFKPSQEELIDY 118 (289)
T ss_dssp HHHTT-SEEEEEESTSSSCCHHHHHHH
T ss_pred HhhcCceEEEEeccccccchhhHHHHH
Confidence 89999876333 467666655
No 78
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=84.24 E-value=4.7 Score=32.88 Aligned_cols=45 Identities=29% Similarity=0.298 Sum_probs=31.9
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~ 60 (173)
++..+...++.+.++|+..|.|-|.++ +.+++++..-|+..++..
T Consensus 144 ~~~~l~~~~~~~~~~g~~~i~l~Dt~G-----------~~~P~~v~~li~~l~~~~ 188 (265)
T cd03174 144 DPEYVLEVAKALEEAGADEISLKDTVG-----------LATPEEVAELVKALREAL 188 (265)
T ss_pred CHHHHHHHHHHHHHcCCCEEEechhcC-----------CcCHHHHHHHHHHHHHhC
Confidence 455677778888888888888888753 456677777777766554
No 79
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=84.13 E-value=4.3 Score=31.16 Aligned_cols=22 Identities=14% Similarity=-0.082 Sum_probs=18.5
Q ss_pred CCHHHHHhCCccEEEechHHHH
Q 037554 93 HTPEELKAMGFHLTVHPLTALY 114 (173)
Q Consensus 93 ~~~~eL~~lGv~~v~~~~~~~~ 114 (173)
-++.++.++|+..+..+...+.
T Consensus 162 ~~i~~~~~~Ga~~i~~g~~i~~ 183 (196)
T cd00564 162 ENAAEVLAAGADGVAVISAITG 183 (196)
T ss_pred HHHHHHHHcCCCEEEEehHhhc
Confidence 3678999999999999988764
No 80
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=83.97 E-value=4.1 Score=31.63 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=28.9
Q ss_pred CCCCHHHHHhCCccEEEechHHHHHHHHHHHHHHHH
Q 037554 91 TLHTPEELKAMGFHLTVHPLTALYASARALVDVLKT 126 (173)
Q Consensus 91 p~~~~~eL~~lGv~~v~~~~~~~~aa~~a~~~~~~~ 126 (173)
|.-+.++|+++|+.++.-|.+.+..++..|.+.+..
T Consensus 104 p~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l~~ 139 (143)
T COG2185 104 PPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRLGA 139 (143)
T ss_pred CchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHHHh
Confidence 334556799999999999999988888888776665
No 81
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=83.41 E-value=3 Score=35.78 Aligned_cols=42 Identities=14% Similarity=0.094 Sum_probs=33.2
Q ss_pred ecCCcccccCCCCHHHHhhh----------h--c-CCCCCHHHHHhCCccEEEech
Q 037554 68 ARADASFVEAPRNDNEANWV----------W--G-HTLHTPEELKAMGFHLTVHPL 110 (173)
Q Consensus 68 AGAD~ifv~g~~~~e~i~~i----------~--g-~p~~~~~eL~~lGv~~v~~~~ 110 (173)
+|||.|+..-. +++++++. + | -..-++.++++.||+++|.|.
T Consensus 212 ~gaDiImLDn~-s~e~l~~av~~~~~~~~leaSGgI~~~ni~~yA~tGVD~Is~ga 266 (281)
T PRK06543 212 AGVDTIMLDNF-SLDDLREGVELVDGRAIVEASGNVNLNTVGAIASTGVDVISVGA 266 (281)
T ss_pred cCCCEEEECCC-CHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 99999999875 77777766 1 2 233577999999999999984
No 82
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=82.98 E-value=5.6 Score=33.51 Aligned_cols=44 Identities=11% Similarity=0.131 Sum_probs=34.4
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHh
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDA 59 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a 59 (173)
++..+.+.++.+.++|+.-|+|-|.++ +..++++...|++.++.
T Consensus 147 ~~~~~~~~~~~~~~~Ga~~i~l~DT~G-----------~~~P~~v~~lv~~l~~~ 190 (275)
T cd07937 147 TLEYYVKLAKELEDMGADSICIKDMAG-----------LLTPYAAYELVKALKKE 190 (275)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCC-----------CCCHHHHHHHHHHHHHh
Confidence 457788888889999999999999874 45667777777777765
No 83
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=82.92 E-value=13 Score=31.78 Aligned_cols=97 Identities=19% Similarity=0.159 Sum_probs=64.9
Q ss_pred HHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE-----------------------
Q 037554 11 RTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL----------------------- 67 (173)
Q Consensus 11 rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I----------------------- 67 (173)
.+.+-+.++|+.-|-+-|+...---||. +.-.++.++|+.--+|.+++..+ -|++
T Consensus 26 ~~A~~~d~agvd~lLVGDSlgmvv~G~~-sTl~Vsl~~mi~ht~aV~Rga~~-~~vv~DmPF~sy~~s~~~a~~nA~r~~ 103 (268)
T COG0413 26 PFAKLFDQAGVDVLLVGDSLGMVVLGYD-STLPVTLEDMIYHTKAVRRGAPN-AFVVADLPFGSYEVSPEQALKNAARLM 103 (268)
T ss_pred HHHhhhhhcCCcEEEEeccHHHHHcCCC-CcceecHHHHHHHHHHHHhcCCC-eeEEeCCCCcccCCCHHHHHHHHHHHH
Confidence 4667889999999999998753333332 34568999999999998877643 2444
Q ss_pred --ecCCcccccCCCC-HHHHhhhh--cCC-----CCCHHHHHhCC-ccEEEec
Q 037554 68 --ARADASFVEAPRN-DNEANWVW--GHT-----LHTPEELKAMG-FHLTVHP 109 (173)
Q Consensus 68 --AGAD~ifv~g~~~-~e~i~~i~--g~p-----~~~~~eL~~lG-v~~v~~~ 109 (173)
+|||+|.++|-.. .+.++++. |-| .++++...-+| |+.+-=.
T Consensus 104 ke~gA~aVKlEGG~~~~~~i~~L~~~gIPV~gHiGLtPQ~v~~~GGykvqGr~ 156 (268)
T COG0413 104 KEAGADAVKLEGGEEMAETIKRLTERGIPVMGHIGLTPQSVNWLGGYKVQGRT 156 (268)
T ss_pred HHhCCCEEEEcCCHHHHHHHHHHHHcCCceEEEecCChhhhhccCCeeeecCC
Confidence 8999999998532 45555662 444 35555544443 6655443
No 84
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=82.89 E-value=6.1 Score=32.87 Aligned_cols=44 Identities=14% Similarity=0.254 Sum_probs=32.5
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHh
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDA 59 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a 59 (173)
++..+.+.++.+.++|+.-|.|-|..+ +..|+++.+-++..++.
T Consensus 139 ~~~~~~~~~~~~~~~G~d~i~l~DT~G-----------~~~P~~v~~lv~~l~~~ 182 (263)
T cd07943 139 SPEELAEQAKLMESYGADCVYVTDSAG-----------AMLPDDVRERVRALREA 182 (263)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCC-----------CcCHHHHHHHHHHHHHh
Confidence 567778888888888888888888874 44566666666666654
No 85
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=82.72 E-value=6.2 Score=33.18 Aligned_cols=43 Identities=23% Similarity=0.105 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHh
Q 037554 6 ALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDA 59 (173)
Q Consensus 6 ~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a 59 (173)
+.-+.+.++.+.++|+..|.|-|.++ ...|+++...+++.++.
T Consensus 150 ~~~~~~~~~~~~~~g~~~i~l~DT~G-----------~~~P~~v~~lv~~l~~~ 192 (273)
T cd07941 150 PEYALATLKAAAEAGADWLVLCDTNG-----------GTLPHEIAEIVKEVRER 192 (273)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCCC-----------CCCHHHHHHHHHHHHHh
Confidence 45566777777777777777777663 34556666666666654
No 86
>PLN02334 ribulose-phosphate 3-epimerase
Probab=82.61 E-value=3.7 Score=33.45 Aligned_cols=68 Identities=18% Similarity=0.125 Sum_probs=41.5
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE------------ecCCc
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL------------ARADA 72 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I------------AGAD~ 72 (173)
+..+..+.+++++++|+.-||+..... |........+ +.+..|+...+..-+.+|+| +|||+
T Consensus 18 ~~~~l~~~l~~~~~~g~~~ihld~~d~-----~f~~~~~~g~-~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~~gad~ 91 (229)
T PLN02334 18 DFANLAEEAKRVLDAGADWLHVDVMDG-----HFVPNLTIGP-PVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAGASI 91 (229)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccC-----CcCCccccCH-HHHHHHHhcCCCcEEEEeccCCHHHHHHHHHHcCCCE
Confidence 446888999999999999999955432 2211112222 45555554321111234444 89999
Q ss_pred ccccCC
Q 037554 73 SFVEAP 78 (173)
Q Consensus 73 ifv~g~ 78 (173)
|.+|.-
T Consensus 92 v~vH~~ 97 (229)
T PLN02334 92 FTFHIE 97 (229)
T ss_pred EEEeec
Confidence 988775
No 87
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=82.27 E-value=5 Score=35.51 Aligned_cols=66 Identities=15% Similarity=0.123 Sum_probs=47.0
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcC----CCCEEE-------------
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIG----DSDFVL------------- 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~----~~d~~I------------- 67 (173)
++.+..+.+..++..|+.+|-. |.. +......|.+|=+..++.+++... ..-+++
T Consensus 144 d~~~la~~~~~l~~gGvD~Ikd-de~-------~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~~~~e~i~~ 215 (367)
T cd08205 144 SPEELAELAYELALGGIDLIKD-DEL-------LADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNITGDPDELRRR 215 (367)
T ss_pred CHHHHHHHHHHHHhcCCCeeec-ccc-------ccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCCHHHHHHH
Confidence 6788999999999999999852 222 234567788888877777776543 333444
Q ss_pred ------ecCCcccccCC
Q 037554 68 ------ARADASFVEAP 78 (173)
Q Consensus 68 ------AGAD~ifv~g~ 78 (173)
+|||++++.-+
T Consensus 216 a~~a~~~Gad~vmv~~~ 232 (367)
T cd08205 216 ADRAVEAGANALLINPN 232 (367)
T ss_pred HHHHHHcCCCEEEEecc
Confidence 89999987544
No 88
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=82.17 E-value=23 Score=33.35 Aligned_cols=73 Identities=8% Similarity=-0.034 Sum_probs=51.1
Q ss_pred ecCCcccccCCCCHHHHhhh------------h-c--------------CC--CCCHHHHHhCCccEEEechHHHHH---
Q 037554 68 ARADASFVEAPRNDNEANWV------------W-G--------------HT--LHTPEELKAMGFHLTVHPLTALYA--- 115 (173)
Q Consensus 68 AGAD~ifv~g~~~~e~i~~i------------~-g--------------~p--~~~~~eL~~lGv~~v~~~~~~~~a--- 115 (173)
.|+..|++|-+.+.+|++++ . + +| ...++++.+ |++.+|+|+.=+..
T Consensus 383 ~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~mIE~p~a~~~~d~i~~-~vDf~sIGtnDL~qy~l 461 (575)
T PRK11177 383 FGKLRIMFPMIISVEEVRELKAEIEILKQELRDEGKAFDESIEIGVMVETPAAAVIARHLAK-EVDFFSIGTNDLTQYTL 461 (575)
T ss_pred CCCcEEEEcCCCCHHHHHHHHHHHHHHHHHHHHhccccCCCcEEEEEEeCHHHHHhHHHHHh-hCCEEEECcHHHHHHHH
Confidence 69999999999999998777 0 1 11 246788886 99999999654443
Q ss_pred -------------------HHHHHHHHHHHHHHcCCcccccccCC
Q 037554 116 -------------------SARALVDVLKTLKESGTTRDHLEKMG 141 (173)
Q Consensus 116 -------------------a~~a~~~~~~~l~~~g~~~~~~~~~~ 141 (173)
...++..+.+..++.|..-+..+.|.
T Consensus 462 a~dr~n~~v~~~~~~~hPav~~~i~~v~~~a~~~g~~v~vCGe~A 506 (575)
T PRK11177 462 AVDRGNELISHLYNPMSPSVLNLIKQVIDASHAEGKWTGMCGELA 506 (575)
T ss_pred HhccCCchhhccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCC
Confidence 33456666666677777665555553
No 89
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=81.81 E-value=32 Score=29.44 Aligned_cols=114 Identities=12% Similarity=0.168 Sum_probs=69.6
Q ss_pred CCChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcC-CCCEEE--------------
Q 037554 3 GGNALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIG-DSDFVL-------------- 67 (173)
Q Consensus 3 yG~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~-~~d~~I-------------- 67 (173)
|.++..+.+.++++.+.||.=|-|-=+.. .+|.+.+|.+|-.+||.-++++.. ..++.|
T Consensus 34 ~~~~~~a~~~a~~~~~~GAdIIDIGgeST------rPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~ISIDT~~~~va~~AL 107 (282)
T PRK11613 34 HNSLIDAVKHANLMINAGATIIDVGGEST------RPGAAEVSVEEELDRVIPVVEAIAQRFEVWISVDTSKPEVIRESA 107 (282)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEECCCCC------CCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEECCCHHHHHHHH
Confidence 34678888999999999999987764443 124557888888888775555533 234444
Q ss_pred -ecCCcc-cccCCCCHHHHhhhhcCCCCCHHHHHhCCccEEEech--------------HHHHHHHHHHHHHHHHHHHcC
Q 037554 68 -ARADAS-FVEAPRNDNEANWVWGHTLHTPEELKAMGFHLTVHPL--------------TALYASARALVDVLKTLKESG 131 (173)
Q Consensus 68 -AGAD~i-fv~g~~~~e~i~~i~g~p~~~~~eL~~lGv~~v~~~~--------------~~~~aa~~a~~~~~~~l~~~g 131 (173)
+|||+| =|-|+.+++-+..+ ++.|+..|+++. .........+.+..+.+.+.|
T Consensus 108 ~~GadiINDI~g~~d~~~~~~~-----------a~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~G 176 (282)
T PRK11613 108 KAGAHIINDIRSLSEPGALEAA-----------AETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAG 176 (282)
T ss_pred HcCCCEEEECCCCCCHHHHHHH-----------HHcCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcC
Confidence 899976 12355454434333 233333333321 344555566777777777777
Q ss_pred Cc
Q 037554 132 TT 133 (173)
Q Consensus 132 ~~ 133 (173)
-.
T Consensus 177 I~ 178 (282)
T PRK11613 177 IA 178 (282)
T ss_pred CC
Confidence 53
No 90
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=81.75 E-value=6 Score=33.30 Aligned_cols=94 Identities=21% Similarity=0.176 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhCceEEEec-cCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc-CCCCEEE----------ecCCccc
Q 037554 7 LNVQRTVKDLVAAGAAGCFLE-DQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI-GDSDFVL----------ARADASF 74 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iE-Dq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~-~~~d~~I----------AGAD~if 74 (173)
.+....++.|+++||++|.+= |.. +..| +. +...+++.++..- -..||+| +|||+|+
T Consensus 61 ~d~~~~A~~y~~~GA~aISVlTe~~------~F~G----s~-~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADavL 129 (247)
T PRK13957 61 YHPVQIAKTYETLGASAISVLTDQS------YFGG----SL-EDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAIL 129 (247)
T ss_pred CCHHHHHHHHHHCCCcEEEEEcCCC------cCCC----CH-HHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEEE
Confidence 456778899999999999652 222 1222 22 4555555544221 1257888 8999987
Q ss_pred ccC-CCCHHHHhhh-----h-c-CCC---CCHHHH---HhCCccEEEechH
Q 037554 75 VEA-PRNDNEANWV-----W-G-HTL---HTPEEL---KAMGFHLTVHPLT 111 (173)
Q Consensus 75 v~g-~~~~e~i~~i-----~-g-~p~---~~~~eL---~~lGv~~v~~~~~ 111 (173)
... .-+.+++..+ . | .|+ .+.+|+ .++|.+.+-+-+-
T Consensus 130 LI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnR 180 (247)
T PRK13957 130 LIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTR 180 (247)
T ss_pred eEHhhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCC
Confidence 643 4567777777 2 5 443 566665 5678887766543
No 91
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=81.74 E-value=6.8 Score=32.70 Aligned_cols=44 Identities=25% Similarity=0.116 Sum_probs=29.9
Q ss_pred ecCCcccccCCCCHHHHhhhh---cCCC-----CCHHHHHhCCccEEEechH
Q 037554 68 ARADASFVEAPRNDNEANWVW---GHTL-----HTPEELKAMGFHLTVHPLT 111 (173)
Q Consensus 68 AGAD~ifv~g~~~~e~i~~i~---g~p~-----~~~~eL~~lGv~~v~~~~~ 111 (173)
+|||+|.+++-+--.....+. +.|+ -|.++++..|+++|-.=.+
T Consensus 74 ~GAd~i~l~~NT~H~~~d~iq~~~~iPllhIidaTa~~ik~~g~kkvgLLgT 125 (230)
T COG1794 74 AGADFIVLPTNTMHKVADDIQKAVGIPLLHIIDATAKAIKAAGAKKVGLLGT 125 (230)
T ss_pred cCCCEEEEeCCcHHHHHHHHHHhcCCCeehHHHHHHHHHHhcCCceeEEeec
Confidence 899999998743223333442 3564 4678999999999876433
No 92
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=81.48 E-value=3.9 Score=32.31 Aligned_cols=45 Identities=18% Similarity=0.130 Sum_probs=32.9
Q ss_pred ecCCcccccCCCCHHHHhhh----h-----------c-CCCCCHHHHHhCCccEEEechHHH
Q 037554 68 ARADASFVEAPRNDNEANWV----W-----------G-HTLHTPEELKAMGFHLTVHPLTAL 113 (173)
Q Consensus 68 AGAD~ifv~g~~~~e~i~~i----~-----------g-~p~~~~~eL~~lGv~~v~~~~~~~ 113 (173)
+|||.|.+.-. ++++++++ + | --.-++.++++.||+.++.|....
T Consensus 99 ~g~d~I~lD~~-~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~~gvD~isvg~~~~ 159 (169)
T PF01729_consen 99 AGADIIMLDNM-SPEDLKEAVEELRELNPRVKIEASGGITLENIAEYAKTGVDVISVGSLTH 159 (169)
T ss_dssp TT-SEEEEES--CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHHTT-SEEEECHHHH
T ss_pred hCCCEEEecCc-CHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHhcCCCEEEcChhhc
Confidence 99999999875 77777776 1 1 224688999999999999986653
No 93
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=81.40 E-value=2.7 Score=36.28 Aligned_cols=42 Identities=10% Similarity=0.000 Sum_probs=32.9
Q ss_pred ecCCcccccCCCCHHHHhhh----------h--c-CCCCCHHHHHhCCccEEEech
Q 037554 68 ARADASFVEAPRNDNEANWV----------W--G-HTLHTPEELKAMGFHLTVHPL 110 (173)
Q Consensus 68 AGAD~ifv~g~~~~e~i~~i----------~--g-~p~~~~~eL~~lGv~~v~~~~ 110 (173)
+|||.|+.+-. +++++++. + | -..-++.++++.||+++|.|.
T Consensus 224 aGaDiImLDnm-spe~l~~av~~~~~~~~lEaSGGIt~~ni~~yA~tGVD~IS~ga 278 (294)
T PRK06978 224 HGAQSVLLDNF-TLDMMREAVRVTAGRAVLEVSGGVNFDTVRAFAETGVDRISIGA 278 (294)
T ss_pred cCCCEEEECCC-CHHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 99999999875 77777766 1 2 223577899999999999985
No 94
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=81.31 E-value=6.1 Score=36.55 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=36.5
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~ 60 (173)
++.-+.+.++.++++|+.-|+|-|.++ +..++++.+.|+..++.-
T Consensus 237 d~efl~~~~~~a~~~Gad~I~l~DTvG-----------~~tP~~v~~lV~~l~~~~ 281 (503)
T PLN03228 237 DKEFLCKILGEAIKAGATSVGIADTVG-----------INMPHEFGELVTYVKANT 281 (503)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEecCCC-----------CCCHHHHHHHHHHHHHHh
Confidence 456688999999999999999999885 456677888888777653
No 95
>PLN02591 tryptophan synthase
Probab=81.27 E-value=20 Score=30.13 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=22.6
Q ss_pred CCCCh---HHHHHHHHHHHHhCceEEEeccC
Q 037554 2 GGGNA---LNVQRTVKDLVAAGAAGCFLEDQ 29 (173)
Q Consensus 2 GyG~~---~~v~rtv~~~~~aGvagi~iEDq 29 (173)
+|-|+ ..+.+.++++.++|+.|+-|-|=
T Consensus 85 ~Y~N~i~~~G~~~F~~~~~~aGv~GviipDL 115 (250)
T PLN02591 85 TYYNPILKRGIDKFMATIKEAGVHGLVVPDL 115 (250)
T ss_pred ecccHHHHhHHHHHHHHHHHcCCCEEEeCCC
Confidence 46664 35678899999999999999993
No 96
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=81.17 E-value=5.5 Score=37.63 Aligned_cols=44 Identities=16% Similarity=0.128 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc
Q 037554 6 ALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60 (173)
Q Consensus 6 ~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~ 60 (173)
+..+.+.+++++++|+.-|+|-|..+ +..++...+.|++.++.-
T Consensus 153 ~e~~~~~ak~l~~~Gad~I~IkDtaG-----------~l~P~~v~~lv~alk~~~ 196 (596)
T PRK14042 153 LDNFLELGKKLAEMGCDSIAIKDMAG-----------LLTPTVTVELYAGLKQAT 196 (596)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCccc-----------CCCHHHHHHHHHHHHhhc
Confidence 45677889999999999999999874 567788888888888763
No 97
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=81.03 E-value=26 Score=27.90 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=20.7
Q ss_pred ChHHHHHHHHHHHHhCceEEEec
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLE 27 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iE 27 (173)
++.+..+.++.+.++|+.||.|-
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln 87 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLN 87 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEe
Confidence 57889999999999999999884
No 98
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=80.96 E-value=7.8 Score=32.17 Aligned_cols=43 Identities=19% Similarity=0.008 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHh
Q 037554 6 ALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDA 59 (173)
Q Consensus 6 ~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a 59 (173)
+..+.+.++++.++|+..|.|=|.++ ...|+++.+.++++++.
T Consensus 138 ~~~~~~~~~~~~~~G~~~i~l~DT~G-----------~~~P~~v~~lv~~l~~~ 180 (259)
T cd07939 138 PDFLIEFAEVAQEAGADRLRFADTVG-----------ILDPFTTYELIRRLRAA 180 (259)
T ss_pred HHHHHHHHHHHHHCCCCEEEeCCCCC-----------CCCHHHHHHHHHHHHHh
Confidence 45566666777777777777777653 34456666666666544
No 99
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=80.94 E-value=3.3 Score=32.55 Aligned_cols=70 Identities=17% Similarity=0.106 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE------------ecCCc
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL------------ARADA 72 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I------------AGAD~ 72 (173)
+..+..+.++.+.++|+..|++-....+ ...... +++ +.+++|+.......+.++++ +|+|+
T Consensus 10 d~~~~~~~~~~~~~~G~~~i~l~~~d~~----~~~~~~-~~~-~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g~dg 83 (211)
T cd00429 10 DFANLGEELKRLEEAGADWIHIDVMDGH----FVPNLT-FGP-PVVKALRKHTDLPLDVHLMVENPERYIEAFAKAGADI 83 (211)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCC----CCCccc-cCH-HHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcCCCE
Confidence 4578889999999999999998432211 001111 222 46666664331111122333 89999
Q ss_pred ccccCCCC
Q 037554 73 SFVEAPRN 80 (173)
Q Consensus 73 ifv~g~~~ 80 (173)
|.+|+..+
T Consensus 84 v~vh~~~~ 91 (211)
T cd00429 84 ITFHAEAT 91 (211)
T ss_pred EEECccch
Confidence 99988754
No 100
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=80.58 E-value=7.1 Score=36.74 Aligned_cols=45 Identities=9% Similarity=0.169 Sum_probs=36.6
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~ 60 (173)
++.-+.+.+++++++|+.-|+|-|..+ +..+.+..+.|++.++.-
T Consensus 147 ~~~~~~~~~~~~~~~Gad~I~i~Dt~G-----------~~~P~~v~~lv~~lk~~~ 191 (582)
T TIGR01108 147 TLETYLDLAEELLEMGVDSICIKDMAG-----------ILTPKAAYELVSALKKRF 191 (582)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCC-----------CcCHHHHHHHHHHHHHhC
Confidence 346678899999999999999999874 566778888888877654
No 101
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=80.47 E-value=6.2 Score=32.40 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=22.9
Q ss_pred ChHHHHHHHHHHHHhCceEEEe--ccCCC
Q 037554 5 NALNVQRTVKDLVAAGAAGCFL--EDQSW 31 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~i--EDq~~ 31 (173)
++.+..+.+++++++|+.-+|+ .|..+
T Consensus 17 d~~~l~~~~~~l~~~~~~~~H~DimDg~f 45 (228)
T PTZ00170 17 DFSKLADEAQDVLSGGADWLHVDVMDGHF 45 (228)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCcc
Confidence 6789999999999999999986 46554
No 102
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=79.91 E-value=14 Score=31.14 Aligned_cols=34 Identities=26% Similarity=0.469 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHH
Q 037554 9 VQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHA 50 (173)
Q Consensus 9 v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~ 50 (173)
+.+.++.+.++|+.+|.|-|+.. +..++|++.+.
T Consensus 170 ~~~~~~~~~~~G~d~i~i~d~~~--------~~~~isp~~f~ 203 (330)
T cd03465 170 IIRYADALIEAGADGIYISDPWA--------SSSILSPEDFK 203 (330)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcc--------ccCCCCHHHHH
Confidence 45667788889999999999763 23466776655
No 103
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=79.68 E-value=7.9 Score=34.21 Aligned_cols=45 Identities=16% Similarity=0.019 Sum_probs=37.0
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~ 60 (173)
++..+.+.++.+.++|+.-|+|-|.++ ...++++.+.|++.++..
T Consensus 143 ~~~~l~~~~~~~~~~Ga~~I~l~DT~G-----------~~~P~~v~~lv~~l~~~~ 187 (378)
T PRK11858 143 DLDFLIEFAKAAEEAGADRVRFCDTVG-----------ILDPFTMYELVKELVEAV 187 (378)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeccCC-----------CCCHHHHHHHHHHHHHhc
Confidence 567788999999999999999999874 456778888888777654
No 104
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=79.59 E-value=4 Score=35.17 Aligned_cols=42 Identities=12% Similarity=0.117 Sum_probs=33.3
Q ss_pred ecCCcccccCCCCHHHHhhh----------h--c-CCCCCHHHHHhCCccEEEech
Q 037554 68 ARADASFVEAPRNDNEANWV----------W--G-HTLHTPEELKAMGFHLTVHPL 110 (173)
Q Consensus 68 AGAD~ifv~g~~~~e~i~~i----------~--g-~p~~~~~eL~~lGv~~v~~~~ 110 (173)
+|||.|+.+-. +++++++. + | -..-++.++++.||++||.|.
T Consensus 216 agaDiImLDnm-spe~l~~av~~~~~~~~leaSGGI~~~ni~~yA~tGVD~Is~ga 270 (290)
T PRK06559 216 AGADIIMLDNM-SLEQIEQAITLIAGRSRIECSGNIDMTTISRFRGLAIDYVSSGS 270 (290)
T ss_pred cCCCEEEECCC-CHHHHHHHHHHhcCceEEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 99999999875 77777776 1 2 223577899999999999985
No 105
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=79.55 E-value=33 Score=28.91 Aligned_cols=69 Identities=17% Similarity=0.054 Sum_probs=42.8
Q ss_pred ChHHHHHHHHHHHHhC--ceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE---------------
Q 037554 5 NALNVQRTVKDLVAAG--AAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL--------------- 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aG--vagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I--------------- 67 (173)
++..+.+.++.++++| +.+|.|-=. .|..++. ...-+-+++...+-|++++++. +..+++
T Consensus 101 ~~~~~~~~a~~~~~~~~~~d~ielN~~-cP~~~~~-g~~l~~~~~~~~eiv~~vr~~~-~~pv~vKi~~~~~~~~~~a~~ 177 (300)
T TIGR01037 101 SVEEFAEVAEKLEKAPPYVDAYELNLS-CPHVKGG-GIAIGQDPELSADVVKAVKDKT-DVPVFAKLSPNVTDITEIAKA 177 (300)
T ss_pred CHHHHHHHHHHHHhccCccCEEEEECC-CCCCCCC-ccccccCHHHHHHHHHHHHHhc-CCCEEEECCCChhhHHHHHHH
Confidence 5788889999999874 899988722 2322221 1112345666666666666653 233444
Q ss_pred ---ecCCccccc
Q 037554 68 ---ARADASFVE 76 (173)
Q Consensus 68 ---AGAD~ifv~ 76 (173)
+|+|+|-+.
T Consensus 178 l~~~G~d~i~v~ 189 (300)
T TIGR01037 178 AEEAGADGLTLI 189 (300)
T ss_pred HHHcCCCEEEEE
Confidence 999999764
No 106
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=79.39 E-value=4.9 Score=36.49 Aligned_cols=40 Identities=13% Similarity=0.245 Sum_probs=33.8
Q ss_pred HHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc
Q 037554 10 QRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60 (173)
Q Consensus 10 ~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~ 60 (173)
.+.++++++.|+.-|+|-|..+ +.++.+..+-|+++++.-
T Consensus 159 v~~akel~~~g~DSIciKDmaG-----------lltP~~ayelVk~iK~~~ 198 (472)
T COG5016 159 VELAKELLEMGVDSICIKDMAG-----------LLTPYEAYELVKAIKKEL 198 (472)
T ss_pred HHHHHHHHHcCCCEEEeecccc-----------cCChHHHHHHHHHHHHhc
Confidence 4677999999999999999864 778888888999888764
No 107
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=78.96 E-value=4.2 Score=34.92 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=31.7
Q ss_pred ecCCcccccCCCCHHHHhhh-h--------------c-CCCCCHHHHHhCCccEEEech
Q 037554 68 ARADASFVEAPRNDNEANWV-W--------------G-HTLHTPEELKAMGFHLTVHPL 110 (173)
Q Consensus 68 AGAD~ifv~g~~~~e~i~~i-~--------------g-~p~~~~~eL~~lGv~~v~~~~ 110 (173)
+|||.|...-. +++++++. . | -..-++.++++.|++.+|.+.
T Consensus 208 agaDiI~LDn~-~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is~ga 265 (284)
T PRK06096 208 AQPDVLQLDKF-SPQQATEIAQIAPSLAPHCTLSLAGGINLNTLKNYADCGIRLFITSA 265 (284)
T ss_pred cCCCEEEECCC-CHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhcCCCEEEECc
Confidence 99999999764 77777766 1 1 112467889999999999874
No 108
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=78.52 E-value=19 Score=29.99 Aligned_cols=109 Identities=9% Similarity=0.040 Sum_probs=65.0
Q ss_pred CCCChHHHHHHHHHHHHhCceEEEeccCCC-CccCCCCCCCc-ccCHHHHHHHHHHHHHhcCCCCEEE------------
Q 037554 2 GGGNALNVQRTVKDLVAAGAAGCFLEDQSW-PKKCGHMHGKQ-IIPAEEHAAKIASARDAIGDSDFVL------------ 67 (173)
Q Consensus 2 GyG~~~~v~rtv~~~~~aGvagi~iEDq~~-pKrcg~~~g~~-l~~~ee~~~kI~Aa~~a~~~~d~~I------------ 67 (173)
|+.++....+.++.+.+ ++.+|-|-=... ||-+.+..|.. +-+++...+=+++++.. +..+++
T Consensus 75 ~~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~--~~PVsvKiR~~~~~~~~~ 151 (231)
T TIGR00736 75 RFVDLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKEL--NKPIFVKIRGNCIPLDEL 151 (231)
T ss_pred ecCCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcC--CCcEEEEeCCCCCcchHH
Confidence 34467777777777655 899987765442 33343344544 44777777777777643 334444
Q ss_pred --------ecCCcccccCCC------CHHHHhhhh---c-CCC---------CCHHHHHhCCccEEEechHHH
Q 037554 68 --------ARADASFVEAPR------NDNEANWVW---G-HTL---------HTPEELKAMGFHLTVHPLTAL 113 (173)
Q Consensus 68 --------AGAD~ifv~g~~------~~e~i~~i~---g-~p~---------~~~~eL~~lGv~~v~~~~~~~ 113 (173)
+|||+|-|+... +.+.++++. . .|. -+..+..+.|.+.|+.+...+
T Consensus 152 ~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l 224 (231)
T TIGR00736 152 IDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGNNSIDDIESAKEMLKAGADFVSVARAIL 224 (231)
T ss_pred HHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhc
Confidence 999999887643 234455551 1 231 244555667888888875443
No 109
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=78.29 E-value=17 Score=34.09 Aligned_cols=47 Identities=11% Similarity=-0.088 Sum_probs=36.0
Q ss_pred ecCCcccccCCCCHHHHhhh------------h-c--------------CC--CCCHHHHHhCCccEEEechHHHHH
Q 037554 68 ARADASFVEAPRNDNEANWV------------W-G--------------HT--LHTPEELKAMGFHLTVHPLTALYA 115 (173)
Q Consensus 68 AGAD~ifv~g~~~~e~i~~i------------~-g--------------~p--~~~~~eL~~lGv~~v~~~~~~~~a 115 (173)
.|+..|++|.+++.+|++++ . + +| ...++++.+ |++.+++|+.=+..
T Consensus 382 ~G~~~Im~PmV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIEtpaav~~~d~ia~-~vDf~sIGtnDLsq 457 (565)
T TIGR01417 382 YGKLRIMFPMVATVEEIRAVKQELEEEKQELNDEGKAFDENIEVGVMIEIPSAALIADHLAK-EVDFFSIGTNDLTQ 457 (565)
T ss_pred cCCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhccccccCcEEEEEEcCHHHHHhHHHHHh-hCCEEEEChhHHHH
Confidence 69999999999999998877 0 1 11 145788888 99999999765443
No 110
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=77.82 E-value=12 Score=31.09 Aligned_cols=64 Identities=13% Similarity=0.062 Sum_probs=46.1
Q ss_pred HHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE---------------ecCCcccc
Q 037554 11 RTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL---------------ARADASFV 75 (173)
Q Consensus 11 rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I---------------AGAD~ifv 75 (173)
..++.+..+|...|.|+=+ |. ..+.+++..-|+++... +...++ +|||+|.+
T Consensus 24 ~~~e~~~~~g~D~v~iDlE-------H~----~~~~~~~~~~~~a~~~~--g~~~~VRv~~~~~~~i~~~Ld~Ga~gIiv 90 (249)
T TIGR02311 24 YAAEICAGAGFDWLLIDGE-------HA----PNDVRTILSQLQALAPY--PSSPVVRPAIGDPVLIKQLLDIGAQTLLV 90 (249)
T ss_pred HHHHHHHhcCCCEEEEecc-------CC----CCCHHHHHHHHHHHHhc--CCCcEEECCCCCHHHHHHHhCCCCCEEEe
Confidence 4567778888888877443 21 24777888777666432 223444 99999999
Q ss_pred cCCCCHHHHhhh
Q 037554 76 EAPRNDNEANWV 87 (173)
Q Consensus 76 ~g~~~~e~i~~i 87 (173)
|-+.|.|+++++
T Consensus 91 P~v~s~e~a~~~ 102 (249)
T TIGR02311 91 PMIETAEQAEAA 102 (249)
T ss_pred cCcCCHHHHHHH
Confidence 999999999998
No 111
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=77.75 E-value=5.6 Score=34.41 Aligned_cols=42 Identities=21% Similarity=0.173 Sum_probs=33.0
Q ss_pred ecCCcccccCCCCHHHHhhh----------h--c-CCCCCHHHHHhCCccEEEech
Q 037554 68 ARADASFVEAPRNDNEANWV----------W--G-HTLHTPEELKAMGFHLTVHPL 110 (173)
Q Consensus 68 AGAD~ifv~g~~~~e~i~~i----------~--g-~p~~~~~eL~~lGv~~v~~~~ 110 (173)
+|||.|..+-. +++++++. + | -..-++.++++.||+.+|.|.
T Consensus 227 ~gaDiI~LDn~-s~e~~~~av~~~~~~~~ieaSGGI~~~ni~~yA~tGVD~Is~ga 281 (296)
T PRK09016 227 AGADIIMLDNF-TTEQMREAVKRTNGRALLEVSGNVTLETLREFAETGVDFISVGA 281 (296)
T ss_pred cCCCEEEeCCC-ChHHHHHHHHhhcCCeEEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 99999999876 56777776 1 2 223578999999999999985
No 112
>PRK00915 2-isopropylmalate synthase; Validated
Probab=77.64 E-value=10 Score=34.94 Aligned_cols=46 Identities=22% Similarity=0.215 Sum_probs=38.3
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcC
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIG 61 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~ 61 (173)
++.-+.+.++.+.++|+.-|+|-|.++ ...|+++.+.|+..++.-.
T Consensus 147 d~~~l~~~~~~~~~~Ga~~i~l~DTvG-----------~~~P~~~~~~i~~l~~~~~ 192 (513)
T PRK00915 147 DLDFLCRVVEAAIDAGATTINIPDTVG-----------YTTPEEFGELIKTLRERVP 192 (513)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEccCCC-----------CCCHHHHHHHHHHHHHhCC
Confidence 567788999999999999999999985 4567888888888877643
No 113
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=77.37 E-value=9.3 Score=36.04 Aligned_cols=44 Identities=9% Similarity=0.157 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc
Q 037554 6 ALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60 (173)
Q Consensus 6 ~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~ 60 (173)
+..+.+.+++++++|+.-|+|-|..+ +..+++..+.++++++.-
T Consensus 153 ~~~~~~~a~~l~~~Gad~I~i~Dt~G-----------~~~P~~~~~lv~~lk~~~ 196 (592)
T PRK09282 153 IEKYVELAKELEEMGCDSICIKDMAG-----------LLTPYAAYELVKALKEEV 196 (592)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcCC-----------CcCHHHHHHHHHHHHHhC
Confidence 46778999999999999999999874 456778888888777653
No 114
>PRK13753 dihydropteroate synthase; Provisional
Probab=77.23 E-value=18 Score=30.95 Aligned_cols=75 Identities=8% Similarity=0.046 Sum_probs=52.0
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE---------------ec
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL---------------AR 69 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I---------------AG 69 (173)
++..+...++.+.+.||.=|-|-=+.. .++...+|.+|-..||.-++++....+..| +|
T Consensus 23 ~~d~a~~~a~~m~~~GAdIIDIGgeST------rPga~~vs~eeE~~Rv~pvI~~l~~~~~~ISIDT~~~~va~~al~aG 96 (279)
T PRK13753 23 DPAGAVTAAIEMLRVGSDVVDVGPAAS------HPDARPVSPADEIRRIAPLLDALSDQMHRVSIDSFQPETQRYALKRG 96 (279)
T ss_pred CHHHHHHHHHHHHHCCCcEEEECCCCC------CCCCCcCCHHHHHHHHHHHHHHHHhCCCcEEEECCCHHHHHHHHHcC
Confidence 457888899999999999887655443 124457888888888877777654323334 99
Q ss_pred CCccc-ccCCCCHHHHh
Q 037554 70 ADASF-VEAPRNDNEAN 85 (173)
Q Consensus 70 AD~if-v~g~~~~e~i~ 85 (173)
||+|- |.|.++++-+.
T Consensus 97 adiINDVsg~~d~~~~~ 113 (279)
T PRK13753 97 VGYLNDIQGFPDPALYP 113 (279)
T ss_pred CCEEEeCCCCCchHHHH
Confidence 99887 55665544443
No 115
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=77.22 E-value=10 Score=33.27 Aligned_cols=45 Identities=16% Similarity=0.087 Sum_probs=37.0
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~ 60 (173)
++.-+.+.++.+.++|+.-|+|-|.++ +..++++.+.|+..++..
T Consensus 140 ~~~~l~~~~~~~~~~Ga~~i~l~DT~G-----------~~~P~~v~~lv~~l~~~~ 184 (365)
T TIGR02660 140 DPDFLVELAEVAAEAGADRFRFADTVG-----------ILDPFSTYELVRALRQAV 184 (365)
T ss_pred CHHHHHHHHHHHHHcCcCEEEEcccCC-----------CCCHHHHHHHHHHHHHhc
Confidence 467788999999999999999999874 456788888888877653
No 116
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=76.94 E-value=6 Score=33.92 Aligned_cols=43 Identities=19% Similarity=0.123 Sum_probs=33.3
Q ss_pred ecCCcccccCCCCHHHHhhh-h-----------c-CCCCCHHHHHhCCccEEEechH
Q 037554 68 ARADASFVEAPRNDNEANWV-W-----------G-HTLHTPEELKAMGFHLTVHPLT 111 (173)
Q Consensus 68 AGAD~ifv~g~~~~e~i~~i-~-----------g-~p~~~~~eL~~lGv~~v~~~~~ 111 (173)
+|||.|..+-. +++++++. . | -..-++.++++.||+++|.|..
T Consensus 213 ~gaDiI~LDn~-s~e~l~~av~~~~~~~~leaSGGI~~~ni~~yA~tGVD~Is~Gal 268 (281)
T PRK06106 213 LGVDAVLLDNM-TPDTLREAVAIVAGRAITEASGRITPETAPAIAASGVDLISVGWL 268 (281)
T ss_pred cCCCEEEeCCC-CHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHhcCCCEEEeChh
Confidence 99999999875 77777766 1 1 2234679999999999999853
No 117
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=76.78 E-value=33 Score=28.67 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhCceEEEeccCC
Q 037554 8 NVQRTVKDLVAAGAAGCFLEDQS 30 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~iEDq~ 30 (173)
.+.+.++.+.++|+.||.|=|-.
T Consensus 103 G~e~f~~~~~~aGvdgviipDlp 125 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVADLP 125 (256)
T ss_pred hHHHHHHHHHHcCCCEEEECCCC
Confidence 35778999999999999999953
No 118
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=76.41 E-value=13 Score=31.58 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhCceEEEec
Q 037554 7 LNVQRTVKDLVAAGAAGCFLE 27 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iE 27 (173)
.++...++.++++||.||.+=
T Consensus 180 ~~~~~~a~~~~~~Gadgi~~~ 200 (299)
T cd02940 180 TDIREIARAAKEGGADGVSAI 200 (299)
T ss_pred hhHHHHHHHHHHcCCCEEEEe
Confidence 467788899999999999853
No 119
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=76.34 E-value=27 Score=28.66 Aligned_cols=91 Identities=15% Similarity=0.141 Sum_probs=60.5
Q ss_pred HHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE---------ecCCcccccCC-C
Q 037554 10 QRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL---------ARADASFVEAP-R 79 (173)
Q Consensus 10 ~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I---------AGAD~ifv~g~-~ 79 (173)
.+.|.+..+.||..++|=|+.... .. ..+.+.+++.++... +..|+| .|||+|=+..- -
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K~~~~-------~~---~~~~a~~~~~lc~~~-~v~liINd~~dlA~~~~AdGVHlGq~D~ 92 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREKDLSD-------EE---YLALAEKLRALCQKY-GVPLIINDRVDLALAVGADGVHLGQDDM 92 (211)
T ss_pred HHHHHHHHhCCCeEEEEecCCCCh-------HH---HHHHHHHHHHHHHHh-CCeEEecCcHHHHHhCCCCEEEcCCccc
Confidence 789999999999999999976321 00 135566777776654 466888 89999988442 2
Q ss_pred CHHHHhhhh------cCCCCCHHHH---HhCCccEEEechH
Q 037554 80 NDNEANWVW------GHTLHTPEEL---KAMGFHLTVHPLT 111 (173)
Q Consensus 80 ~~e~i~~i~------g~p~~~~~eL---~~lGv~~v~~~~~ 111 (173)
...+.+++- |....+.+|+ .++|++.|.+|+.
T Consensus 93 ~~~~ar~~~~~~~iIG~S~h~~eea~~A~~~g~DYv~~Gpi 133 (211)
T COG0352 93 PLAEARELLGPGLIIGLSTHDLEEALEAEELGADYVGLGPI 133 (211)
T ss_pred chHHHHHhcCCCCEEEeecCCHHHHHHHHhcCCCEEEECCc
Confidence 456666661 3233355444 4567888888743
No 120
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=76.30 E-value=10 Score=35.21 Aligned_cols=45 Identities=18% Similarity=0.056 Sum_probs=37.5
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~ 60 (173)
++.-+.+.++.+.++|+.-|+|=|.++ ...|+++.+.|+..++.-
T Consensus 152 ~~~~l~~~~~~a~~aGad~i~i~DTvG-----------~~~P~~v~~li~~l~~~~ 196 (526)
T TIGR00977 152 NPEYALATLATAQQAGADWLVLCDTNG-----------GTLPHEISEITTKVKRSL 196 (526)
T ss_pred CHHHHHHHHHHHHhCCCCeEEEecCCC-----------CcCHHHHHHHHHHHHHhC
Confidence 567889999999999999999999884 456778888888887654
No 121
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=76.05 E-value=40 Score=27.27 Aligned_cols=86 Identities=16% Similarity=0.100 Sum_probs=51.8
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE----------------e
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL----------------A 68 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I----------------A 68 (173)
++.+..+.++.+.+.|+.-|.|-.+.. ...+.|+..++... .++.| +
T Consensus 20 ~~~~~~~~~~a~~~gGi~~iEvt~~~~----------------~~~~~i~~l~~~~~-~~~~iGaGTV~~~~~~~~a~~a 82 (206)
T PRK09140 20 TPDEALAHVGALIEAGFRAIEIPLNSP----------------DPFDSIAALVKALG-DRALIGAGTVLSPEQVDRLADA 82 (206)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCc----------------cHHHHHHHHHHHcC-CCcEEeEEecCCHHHHHHHHHc
Confidence 467888999999999999999876542 12224444443322 24444 8
Q ss_pred cCCcccccCCCCHHHHhhhh--c---CC-CCCHH---HHHhCCccEEEe
Q 037554 69 RADASFVEAPRNDNEANWVW--G---HT-LHTPE---ELKAMGFHLTVH 108 (173)
Q Consensus 69 GAD~ifv~g~~~~e~i~~i~--g---~p-~~~~~---eL~~lGv~~v~~ 108 (173)
|||.+..|+ .+.+.++... + -| ..|.+ +..++|++.+-+
T Consensus 83 GA~fivsp~-~~~~v~~~~~~~~~~~~~G~~t~~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 83 GGRLIVTPN-TDPEVIRRAVALGMVVMPGVATPTEAFAALRAGAQALKL 130 (206)
T ss_pred CCCEEECCC-CCHHHHHHHHHCCCcEEcccCCHHHHHHHHHcCCCEEEE
Confidence 888888766 3554444441 2 12 23443 345677777754
No 122
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=75.95 E-value=12 Score=34.40 Aligned_cols=46 Identities=20% Similarity=0.164 Sum_probs=37.5
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcC
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIG 61 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~ 61 (173)
++.-+.+.++.+.++|+.-|+|=|.++ ...|+++.+.|+..++.-.
T Consensus 144 d~~~l~~~~~~~~~~Ga~~i~l~DTvG-----------~~~P~~~~~~i~~l~~~~~ 189 (494)
T TIGR00973 144 EIPFLARIVEAAINAGATTINIPDTVG-----------YALPAEYGNLIKGLRENVP 189 (494)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCC-----------CCCHHHHHHHHHHHHHhhc
Confidence 567888999999999999999999985 4566788888887776543
No 123
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=75.70 E-value=6.2 Score=33.97 Aligned_cols=44 Identities=14% Similarity=0.054 Sum_probs=33.2
Q ss_pred ecCCcccccCCCCHHHHhhh-h--------------c-CCCCCHHHHHhCCccEEEechHH
Q 037554 68 ARADASFVEAPRNDNEANWV-W--------------G-HTLHTPEELKAMGFHLTVHPLTA 112 (173)
Q Consensus 68 AGAD~ifv~g~~~~e~i~~i-~--------------g-~p~~~~~eL~~lGv~~v~~~~~~ 112 (173)
+|||.|...-. +++++++. . | -..-++.++++.||+.+|.|...
T Consensus 218 ~gaDiI~LDnm-~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~yA~tGvD~Is~galt 277 (289)
T PRK07896 218 EGAELVLLDNF-PVWQTQEAVQRRDARAPTVLLESSGGLTLDTAAAYAETGVDYLAVGALT 277 (289)
T ss_pred cCCCEEEeCCC-CHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEEEeChhh
Confidence 99999999876 57777766 1 1 11246799999999999998533
No 124
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=75.63 E-value=3 Score=33.86 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=22.0
Q ss_pred ChHHHHHHHHHHHHhCceEEEec--cCCC
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLE--DQSW 31 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iE--Dq~~ 31 (173)
+..+..+.+++++++|+.-+||. |..+
T Consensus 10 d~~~l~~~i~~l~~~g~d~lHiDiMDg~f 38 (201)
T PF00834_consen 10 DFLNLEEEIKRLEEAGADWLHIDIMDGHF 38 (201)
T ss_dssp -GGGHHHHHHHHHHTT-SEEEEEEEBSSS
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeccccc
Confidence 56899999999999999999975 7665
No 125
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=75.16 E-value=12 Score=35.39 Aligned_cols=43 Identities=9% Similarity=0.112 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc
Q 037554 7 LNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~ 60 (173)
.-..+.++.++++|+.-|+|-|..+ +..+++..+.|++.++.-
T Consensus 155 ~~~~~~a~~l~~~Gad~i~i~Dt~G-----------~l~P~~~~~lv~~lk~~~ 197 (593)
T PRK14040 155 QTWVDLAKQLEDMGVDSLCIKDMAG-----------LLKPYAAYELVSRIKKRV 197 (593)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCC-----------CcCHHHHHHHHHHHHHhc
Confidence 4577888999999999999999874 566778888888877654
No 126
>PLN02321 2-isopropylmalate synthase
Probab=74.90 E-value=12 Score=35.70 Aligned_cols=45 Identities=18% Similarity=0.174 Sum_probs=37.9
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~ 60 (173)
++.-+.+.++.+.++|+.-|+|-|.++ ...++++.+.|+..++.-
T Consensus 238 d~d~l~~~~~~a~~aGa~~I~L~DTvG-----------~~~P~~v~~li~~l~~~~ 282 (632)
T PLN02321 238 DPEFLYRILGEVIKAGATTLNIPDTVG-----------YTLPSEFGQLIADIKANT 282 (632)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccccc-----------CCCHHHHHHHHHHHHHhc
Confidence 567889999999999999999999985 456688888888887654
No 127
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=74.86 E-value=55 Score=28.25 Aligned_cols=119 Identities=13% Similarity=0.046 Sum_probs=65.1
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE-----------------
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL----------------- 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I----------------- 67 (173)
++....+.++.++++|+.+|.|-=...|.+-+. .+.. ..+...+-+++++++. +..+++
T Consensus 110 ~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~-~g~~--~~~~~~eiv~~v~~~~-~iPv~vKl~p~~~~~~~~a~~l~ 185 (325)
T cd04739 110 SAGGWVDYARQIEEAGADALELNIYALPTDPDI-SGAE--VEQRYLDILRAVKSAV-TIPVAVKLSPFFSALAHMAKQLD 185 (325)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCc-ccch--HHHHHHHHHHHHHhcc-CCCEEEEcCCCccCHHHHHHHHH
Confidence 456788999999999999997654332211111 1111 1233444555555543 334555
Q ss_pred -ecCCcccccCCC-----CH---------------------HHHhhhh---cCC---------CCCHHHHHhCCccEEEe
Q 037554 68 -ARADASFVEAPR-----ND---------------------NEANWVW---GHT---------LHTPEELKAMGFHLTVH 108 (173)
Q Consensus 68 -AGAD~ifv~g~~-----~~---------------------e~i~~i~---g~p---------~~~~~eL~~lGv~~v~~ 108 (173)
+|||+|-+.... +. +.+.++. ..| .-++.+.-.+|.+.|.+
T Consensus 186 ~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv 265 (325)
T cd04739 186 AAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASLAASGGVHDAEDVVKYLLAGADVVMT 265 (325)
T ss_pred HcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCEEEECCCCCHHHHHHHHHcCCCeeEE
Confidence 899999875531 11 1112220 012 13455556699999999
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 037554 109 PLTALYASARALVDVLKTL 127 (173)
Q Consensus 109 ~~~~~~aa~~a~~~~~~~l 127 (173)
+..++..-...+.+..++|
T Consensus 266 ~ta~~~~gp~~~~~i~~~L 284 (325)
T cd04739 266 TSALLRHGPDYIGTLLAGL 284 (325)
T ss_pred ehhhhhcCchHHHHHHHHH
Confidence 9888775344444443333
No 128
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=74.76 E-value=32 Score=26.82 Aligned_cols=93 Identities=18% Similarity=0.121 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE---------ecCCcccccCC
Q 037554 8 NVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL---------ARADASFVEAP 78 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I---------AGAD~ifv~g~ 78 (173)
+....++++.+.|+..|+|-+...+ . ....+.+.+|+...+.+ +..|+| .|+|+|-++.-
T Consensus 14 ~~~~~~~~~~~~g~~~v~lR~~~~~-------~---~~~~~~~~~l~~~~~~~-~~~l~i~~~~~la~~~g~~GvHl~~~ 82 (196)
T TIGR00693 14 DLLNRVEAALKGGVTLVQLRDKGSN-------T---RERLALAEKLQELCRRY-GVPFIVNDRVDLALALGADGVHLGQD 82 (196)
T ss_pred cHHHHHHHHHhcCCCEEEEecCCCC-------H---HHHHHHHHHHHHHHHHh-CCeEEEECHHHHHHHcCCCEEecCcc
Confidence 4567788899999999999775321 1 11234556666665544 356777 89998876432
Q ss_pred -CCHHHHhhh--h----cCCCCCHHH---HHhCCccEEEechH
Q 037554 79 -RNDNEANWV--W----GHTLHTPEE---LKAMGFHLTVHPLT 111 (173)
Q Consensus 79 -~~~e~i~~i--~----g~p~~~~~e---L~~lGv~~v~~~~~ 111 (173)
.+.+.++.. . +....+.++ ..++|++.+.+++.
T Consensus 83 ~~~~~~~r~~~~~~~~ig~s~h~~~e~~~a~~~g~dyi~~~~v 125 (196)
T TIGR00693 83 DLPASEARALLGPDKIIGVSTHNLEELAEAEAEGADYIGFGPI 125 (196)
T ss_pred cCCHHHHHHhcCCCCEEEEeCCCHHHHHHHhHcCCCEEEECCc
Confidence 345566554 1 223344444 45679999987543
No 129
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=74.60 E-value=9.4 Score=32.97 Aligned_cols=111 Identities=15% Similarity=0.059 Sum_probs=65.5
Q ss_pred CC-ChHHHHHHHHHHHHhCceEEEeccCCC-CccCCCCCCCccc-CHHHHHHHHHHHHHhcC-CCCEEE-----------
Q 037554 3 GG-NALNVQRTVKDLVAAGAAGCFLEDQSW-PKKCGHMHGKQII-PAEEHAAKIASARDAIG-DSDFVL----------- 67 (173)
Q Consensus 3 yG-~~~~v~rtv~~~~~aGvagi~iEDq~~-pKrcg~~~g~~l~-~~ee~~~kI~Aa~~a~~-~~d~~I----------- 67 (173)
+| +|..+.+.++.+.+.|..+|+|-=... ||-+....|..|. .++-..+=+++++++-. +..+.+
T Consensus 70 ~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~ 149 (312)
T PRK10550 70 LGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGER 149 (312)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchH
Confidence 46 688899999999999999998864442 2222222232333 44555555566665532 223333
Q ss_pred ----------ecCCcccccCCC----------CHHHHhhh-h--cCC------CCCH---HH-HHhCCccEEEechHHH
Q 037554 68 ----------ARADASFVEAPR----------NDNEANWV-W--GHT------LHTP---EE-LKAMGFHLTVHPLTAL 113 (173)
Q Consensus 68 ----------AGAD~ifv~g~~----------~~e~i~~i-~--g~p------~~~~---~e-L~~lGv~~v~~~~~~~ 113 (173)
+|+|.|-|++-+ +.+.++++ + ..| ..|. .+ |..-|++.|.+|-.++
T Consensus 150 ~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l 228 (312)
T PRK10550 150 KFEIADAVQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGAL 228 (312)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhH
Confidence 999999998742 23445555 1 123 2343 33 3456899999985544
No 130
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=74.47 E-value=50 Score=27.75 Aligned_cols=28 Identities=29% Similarity=0.318 Sum_probs=22.6
Q ss_pred CCCCh---HHHHHHHHHHHHhCceEEEeccC
Q 037554 2 GGGNA---LNVQRTVKDLVAAGAAGCFLEDQ 29 (173)
Q Consensus 2 GyG~~---~~v~rtv~~~~~aGvagi~iEDq 29 (173)
+|-|+ -.+.+.++++.++||.|+.|-|=
T Consensus 96 ~Y~N~i~~~G~e~f~~~~~~aGvdGviipDL 126 (258)
T PRK13111 96 TYYNPIFQYGVERFAADAAEAGVDGLIIPDL 126 (258)
T ss_pred ecccHHhhcCHHHHHHHHHHcCCcEEEECCC
Confidence 46665 35678899999999999999883
No 131
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=74.32 E-value=6.7 Score=33.52 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=31.5
Q ss_pred ecCCcccccCCCCHHHHhhh-h--------------c-CCCCCHHHHHhCCccEEEech
Q 037554 68 ARADASFVEAPRNDNEANWV-W--------------G-HTLHTPEELKAMGFHLTVHPL 110 (173)
Q Consensus 68 AGAD~ifv~g~~~~e~i~~i-~--------------g-~p~~~~~eL~~lGv~~v~~~~ 110 (173)
+|||.|..+.. +++++++. . | -..-++.++++.|++.+|.+.
T Consensus 207 ~GaDiI~lDn~-~~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~ya~~GvD~is~ga 264 (277)
T TIGR01334 207 ASPDILQLDKF-TPQQLHHLHERLKFFDHIPTLAAAGGINPENIADYIEAGIDLFITSA 264 (277)
T ss_pred cCcCEEEECCC-CHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 99999999975 66666655 1 1 112467889999999999974
No 132
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=73.83 E-value=11 Score=31.17 Aligned_cols=131 Identities=15% Similarity=0.121 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCC-EEE------------------e
Q 037554 8 NVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSD-FVL------------------A 68 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d-~~I------------------A 68 (173)
++.+.++-..+++-...-||=. ++|+-. |-++-|+..|+.. || +++ +
T Consensus 14 ~l~~Ai~~a~~v~~~~diiEvG-----------TpLik~-eG~~aV~~lr~~~--pd~~IvAD~Kt~D~G~~e~~ma~~a 79 (217)
T COG0269 14 DLEEAIEIAEEVADYVDIIEVG-----------TPLIKA-EGMRAVRALRELF--PDKIIVADLKTADAGAIEARMAFEA 79 (217)
T ss_pred CHHHHHHHHHHhhhcceEEEeC-----------cHHHHH-hhHHHHHHHHHHC--CCCeEEeeeeecchhHHHHHHHHHc
Confidence 3444455555555555556643 455543 4446666666665 44 333 9
Q ss_pred cCCcccccCCCCHHHHhhh-----h----------c--CCCCCHHHHHhCCccEEEechHHHHHH----H-HHHHHHHHH
Q 037554 69 RADASFVEAPRNDNEANWV-----W----------G--HTLHTPEELKAMGFHLTVHPLTALYAS----A-RALVDVLKT 126 (173)
Q Consensus 69 GAD~ifv~g~~~~e~i~~i-----~----------g--~p~~~~~eL~~lGv~~v~~~~~~~~aa----~-~a~~~~~~~ 126 (173)
|||.+-|-|..+.+.|... + + +|.--.++|.++|++.+.|+...=..+ . ....+..+.
T Consensus 80 GAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~ 159 (217)
T COG0269 80 GADWVTVLGAADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHRGRDAQAAGKSWGEDDLEKIKK 159 (217)
T ss_pred CCCEEEEEecCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEEecccHhhcCCCccHHHHHHHHH
Confidence 9999999999888887766 1 2 233456888899999999985432211 1 123334444
Q ss_pred HHHcCCcccccccCCCHHHHHHhcChh
Q 037554 127 LKESGTTRDHLEKMGTFEEFNQLVNLE 153 (173)
Q Consensus 127 l~~~g~~~~~~~~~~~~~e~~~l~g~~ 153 (173)
+...|-.-.+.++ .+.+++..+.+.+
T Consensus 160 ~~~~g~~vAVaGG-I~~~~i~~~~~~~ 185 (217)
T COG0269 160 LSDLGAKVAVAGG-ITPEDIPLFKGIG 185 (217)
T ss_pred hhccCceEEEecC-CCHHHHHHHhcCC
Confidence 4444433334444 4566666655544
No 133
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=73.81 E-value=32 Score=26.82 Aligned_cols=94 Identities=17% Similarity=0.157 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE---------ecCCcccccC
Q 037554 7 LNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL---------ARADASFVEA 77 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I---------AGAD~ifv~g 77 (173)
.+....+..+.+.|+..|+|-+...++ -...+.+.+|....+.. +..++| .|||+|-++.
T Consensus 12 ~~~~~~l~~~~~~gv~~v~lR~k~~~~----------~~~~~~a~~l~~~~~~~-~~~liin~~~~la~~~~~dGvHl~~ 80 (180)
T PF02581_consen 12 DDFLEQLEAALAAGVDLVQLREKDLSD----------EELLELARRLAELCQKY-GVPLIINDRVDLALELGADGVHLGQ 80 (180)
T ss_dssp CHHHHHHHHHHHTT-SEEEEE-SSS-H----------HHHHHHHHHHHHHHHHT-TGCEEEES-HHHHHHCT-SEEEEBT
T ss_pred chHHHHHHHHHHCCCcEEEEcCCCCCc----------cHHHHHHHHHHHHhhcc-eEEEEecCCHHHHHhcCCCEEEecc
Confidence 457788899999999999999875321 12344555665555433 346777 8999998866
Q ss_pred CC-CHHHHhhh---h---cCCCCCHH---HHHhCCccEEEechH
Q 037554 78 PR-NDNEANWV---W---GHTLHTPE---ELKAMGFHLTVHPLT 111 (173)
Q Consensus 78 ~~-~~e~i~~i---~---g~p~~~~~---eL~~lGv~~v~~~~~ 111 (173)
.. ...+.++. + |....+.+ ++.+.|++.+.+++.
T Consensus 81 ~~~~~~~~r~~~~~~~~ig~S~h~~~e~~~a~~~g~dYv~~gpv 124 (180)
T PF02581_consen 81 SDLPPAEARKLLGPDKIIGASCHSLEEAREAEELGADYVFLGPV 124 (180)
T ss_dssp TSSSHHHHHHHHTTTSEEEEEESSHHHHHHHHHCTTSEEEEETS
T ss_pred cccchHHhhhhcccceEEEeecCcHHHHHHhhhcCCCEEEECCc
Confidence 42 45556554 1 33345554 445689999999875
No 134
>PRK06256 biotin synthase; Validated
Probab=73.68 E-value=20 Score=30.63 Aligned_cols=55 Identities=13% Similarity=-0.116 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcC
Q 037554 6 ALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIG 61 (173)
Q Consensus 6 ~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~ 61 (173)
..++.+++..+.+.|+.-+.+-= ..|..-..+.+.+..+.+|+...|..+|-.-.
T Consensus 215 ~ed~~~~~~~l~~l~~~~v~i~~-l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p 269 (336)
T PRK06256 215 LEDRVEHAFFLKELDADSIPINF-LNPIPGTPLENHPELTPLECLKTIAIFRLINP 269 (336)
T ss_pred HHHHHHHHHHHHhCCCCEEeecc-cccCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
Confidence 45566666666666654444321 12222222223344566777766666665543
No 135
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=73.38 E-value=8.3 Score=33.57 Aligned_cols=44 Identities=11% Similarity=0.029 Sum_probs=33.1
Q ss_pred ecCCcccccCC--------CCHHHHhhh-h-----------c-CCCCCHHHHHhCCccEEEechH
Q 037554 68 ARADASFVEAP--------RNDNEANWV-W-----------G-HTLHTPEELKAMGFHLTVHPLT 111 (173)
Q Consensus 68 AGAD~ifv~g~--------~~~e~i~~i-~-----------g-~p~~~~~eL~~lGv~~v~~~~~ 111 (173)
+|||.|+..-. ++++++++. . | -..-++.++++.||+++|.|.-
T Consensus 228 agaDiImLDnm~~~~~~~~~~~e~l~~av~~~~~~~~lEaSGGIt~~ni~~yA~tGVD~Is~Gal 292 (308)
T PLN02716 228 TSLTRVMLDNMVVPLENGDVDVSMLKEAVELINGRFETEASGNVTLDTVHKIGQTGVTYISSGAL 292 (308)
T ss_pred CCCCEEEeCCCcccccccCCCHHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHcCCCEEEeCcc
Confidence 78999999876 277777766 1 1 2235778999999999999853
No 136
>PRK12999 pyruvate carboxylase; Reviewed
Probab=73.17 E-value=30 Score=35.22 Aligned_cols=118 Identities=19% Similarity=0.130 Sum_probs=72.6
Q ss_pred CCCC-hHHHHHH-HHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcC------------------
Q 037554 2 GGGN-ALNVQRT-VKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIG------------------ 61 (173)
Q Consensus 2 GyG~-~~~v~rt-v~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~------------------ 61 (173)
||-+ |.|+.+. |+...+.|+.-++|=|... +++.+..-|++++++-.
T Consensus 620 gy~~yp~~v~~~~i~~a~~~Gid~~rifd~ln-------------d~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~ 686 (1146)
T PRK12999 620 GYTNYPDNVVRAFVREAAAAGIDVFRIFDSLN-------------WVENMRVAIDAVRETGKIAEAAICYTGDILDPARA 686 (1146)
T ss_pred cccCCCchHHHHHHHHHHHcCCCEEEEeccCC-------------hHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCC
Confidence 5665 6677765 9999999999999998642 23334444455544411
Q ss_pred --CCCEEE--------ecCCcccc---cCCCCHHHHhhh------h-cCC---------C---CCHHHHHhCCccEEEec
Q 037554 62 --DSDFVL--------ARADASFV---EAPRNDNEANWV------W-GHT---------L---HTPEELKAMGFHLTVHP 109 (173)
Q Consensus 62 --~~d~~I--------AGAD~ifv---~g~~~~e~i~~i------~-g~p---------~---~~~~eL~~lGv~~v~~~ 109 (173)
++|+++ +|||.|.+ -|+-+++++.++ + +.| . -+.-.-.+.|++.|-..
T Consensus 687 ~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~~ipi~~H~Hnt~Gla~an~laA~~aGad~vD~a 766 (1146)
T PRK12999 687 KYDLDYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEVDLPIHLHTHDTSGNGLATYLAAAEAGVDIVDVA 766 (1146)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCchHHHHHHHHHHhCCCEEEec
Confidence 011111 79998876 345677776666 1 122 1 23345668899998877
Q ss_pred hHHH--HHHHHHHHHHHHHHHHcCC
Q 037554 110 LTAL--YASARALVDVLKTLKESGT 132 (173)
Q Consensus 110 ~~~~--~aa~~a~~~~~~~l~~~g~ 132 (173)
...+ ++...++...+..|...|.
T Consensus 767 v~glg~~tgn~~le~vv~~L~~~~~ 791 (1146)
T PRK12999 767 VASMSGLTSQPSLNSIVAALEGTER 791 (1146)
T ss_pred chhhcCCcCCHHHHHHHHHHHhcCC
Confidence 6665 4555666777777765543
No 137
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=73.00 E-value=13 Score=32.64 Aligned_cols=44 Identities=14% Similarity=0.143 Sum_probs=36.0
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHh
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDA 59 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a 59 (173)
++..+.+.++.+.++|+..|+|-|.++ ...++++.+.|+..++.
T Consensus 139 ~~~~l~~~~~~~~~~g~~~i~l~DT~G-----------~~~P~~v~~li~~l~~~ 182 (363)
T TIGR02090 139 DIDFLIKVFKRAEEAGADRINIADTVG-----------VLTPQKMEELIKKLKEN 182 (363)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeCCCC-----------ccCHHHHHHHHHHHhcc
Confidence 467788999999999999999999874 45667888888877754
No 138
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=72.85 E-value=7.2 Score=31.02 Aligned_cols=71 Identities=17% Similarity=0.098 Sum_probs=41.7
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE------------ecCCc
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL------------ARADA 72 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I------------AGAD~ 72 (173)
|+.+..+.++.+.++|+.-||+-....+ +.+..+ +. .+.+++|+.......+.++++ +|+|+
T Consensus 14 ~~~~~~~~~~~~~~~G~~~i~l~~~d~~----~~~~~~-~~-~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~g~d~ 87 (220)
T PRK05581 14 DFARLGEEVKAVEAAGADWIHVDVMDGH----FVPNLT-IG-PPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAKAGADI 87 (220)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCccCC----cCCCcC-cC-HHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCE
Confidence 5578889999999999999999432211 101111 11 245555553322000123333 89999
Q ss_pred ccccCCCCH
Q 037554 73 SFVEAPRND 81 (173)
Q Consensus 73 ifv~g~~~~ 81 (173)
|.+|+..+.
T Consensus 88 v~vh~~~~~ 96 (220)
T PRK05581 88 ITFHVEASE 96 (220)
T ss_pred EEEeeccch
Confidence 999987653
No 139
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=72.81 E-value=23 Score=30.22 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHH
Q 037554 9 VQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAA 51 (173)
Q Consensus 9 v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~ 51 (173)
+.+.++.+.++||.+|.|-|+.. +..++|++++.+
T Consensus 182 ~~~~~~~~~~aGad~I~i~d~~a--------~~~~lsp~~f~e 216 (339)
T PRK06252 182 CIEYAKAQLEAGADVICIADPSA--------SPELLGPKMFEE 216 (339)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCc--------cccccCHHHHHH
Confidence 34566778899999999999753 235777777663
No 140
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=72.24 E-value=16 Score=27.91 Aligned_cols=28 Identities=29% Similarity=0.279 Sum_probs=22.6
Q ss_pred HHHhCCccEEEechHHHHHHHHHHHHHH
Q 037554 97 ELKAMGFHLTVHPLTALYASARALVDVL 124 (173)
Q Consensus 97 eL~~lGv~~v~~~~~~~~aa~~a~~~~~ 124 (173)
+|+++||.+|.-|.+.+......+++.+
T Consensus 105 ~l~~~Gv~~vF~pgt~~~~iv~~l~~~~ 132 (134)
T TIGR01501 105 RFKEMGFDRVFAPGTPPEVVIADLKKDL 132 (134)
T ss_pred HHHHcCCCEEECcCCCHHHHHHHHHHHh
Confidence 5999999999999888777777666554
No 141
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=72.01 E-value=14 Score=31.97 Aligned_cols=127 Identities=11% Similarity=0.081 Sum_probs=73.3
Q ss_pred CC-ChHHHHHHHHHHHHhCceEEEeccCCC-CccCCCCCCCccc-CHHHHHHHHHHHHHhcCCCCEEE------------
Q 037554 3 GG-NALNVQRTVKDLVAAGAAGCFLEDQSW-PKKCGHMHGKQII-PAEEHAAKIASARDAIGDSDFVL------------ 67 (173)
Q Consensus 3 yG-~~~~v~rtv~~~~~aGvagi~iEDq~~-pKrcg~~~g~~l~-~~ee~~~kI~Aa~~a~~~~d~~I------------ 67 (173)
+| ++..+.++++.+.+.|+.+|.|-=... +|.+....|..|+ +++...+=+++++++. +..+.+
T Consensus 72 ~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~-d~pv~vKiR~G~~~~~~~ 150 (321)
T PRK10415 72 AGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV-DVPVTLKIRTGWAPEHRN 150 (321)
T ss_pred eCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc-CCceEEEEEccccCCcch
Confidence 46 688889999998899999998866643 2333333344333 5555555555555543 212222
Q ss_pred ----------ecCCcccccCCC---------CHHHHhhh-h--cCC------CC---CHHHHHh-CCccEEEechHHHHH
Q 037554 68 ----------ARADASFVEAPR---------NDNEANWV-W--GHT------LH---TPEELKA-MGFHLTVHPLTALYA 115 (173)
Q Consensus 68 ----------AGAD~ifv~g~~---------~~e~i~~i-~--g~p------~~---~~~eL~~-lGv~~v~~~~~~~~a 115 (173)
+|+|.|.+++.+ +.+.++++ . ..| .. +.+++.+ .|++.|.+|-.++.-
T Consensus 151 ~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~n 230 (321)
T PRK10415 151 CVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALMIGRAAQGR 230 (321)
T ss_pred HHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhcC
Confidence 899999988743 22334444 1 123 12 3355554 699999999666532
Q ss_pred HHHHHHHHHHHHHHcCC
Q 037554 116 SARALVDVLKTLKESGT 132 (173)
Q Consensus 116 a~~a~~~~~~~l~~~g~ 132 (173)
= .+.+..+...+.|.
T Consensus 231 P--~if~~~~~~~~~~~ 245 (321)
T PRK10415 231 P--WIFREIQHYLDTGE 245 (321)
T ss_pred C--hHHHHHHHHHhCCC
Confidence 1 23333344444443
No 142
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=71.93 E-value=25 Score=29.97 Aligned_cols=35 Identities=20% Similarity=0.143 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHH
Q 037554 9 VQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAA 51 (173)
Q Consensus 9 v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~ 51 (173)
+.+.++.+.++||.+|.|-|+.. +..++|++++.+
T Consensus 173 ~~~~~~~~~eaGad~i~i~d~~a--------~~~~isp~~f~e 207 (326)
T cd03307 173 CIEYAKAQLEAGADIITIADPTA--------SPELISPEFYEE 207 (326)
T ss_pred HHHHHHHHHHcCCCEEEecCCCc--------cccccCHHHHHH
Confidence 34556777889999999999863 235778887764
No 143
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=71.31 E-value=12 Score=31.14 Aligned_cols=63 Identities=14% Similarity=0.140 Sum_probs=46.2
Q ss_pred HHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE---------------------ecC
Q 037554 12 TVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL---------------------ARA 70 (173)
Q Consensus 12 tv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I---------------------AGA 70 (173)
+.+.++++|..+|-+-|...---.|+.. ..+++.+|++..++.+..+..-| +.. +|+
T Consensus 21 sA~~~e~~G~~ai~~s~~~~~~s~G~pD-~~~~~~~e~~~~~~~I~~~~~~P-v~~D~~~G~g~~~~~~~~v~~~~~~G~ 98 (243)
T cd00377 21 SARLAERAGFKAIYTSGAGVAASLGLPD-GGLLTLDEVLAAVRRIARAVDLP-VIADADTGYGNALNVARTVRELEEAGA 98 (243)
T ss_pred HHHHHHHcCCCEEEeccHHHHHhcCCCC-CCcCCHHHHHHHHHHHHhhccCC-EEEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence 4577888999999999975422224432 36889999999999998886433 333 899
Q ss_pred Cccccc
Q 037554 71 DASFVE 76 (173)
Q Consensus 71 D~ifv~ 76 (173)
++|.++
T Consensus 99 ~gv~iE 104 (243)
T cd00377 99 AGIHIE 104 (243)
T ss_pred EEEEEe
Confidence 999983
No 144
>PRK12999 pyruvate carboxylase; Reviewed
Probab=71.11 E-value=14 Score=37.56 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc
Q 037554 6 ALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60 (173)
Q Consensus 6 ~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~ 60 (173)
+.-..+.+++++++|+.-|+|-|.++ +..+++..+.|++.+++-
T Consensus 690 ~~~~~~~a~~l~~~Ga~~i~ikDt~G-----------~l~P~~~~~lv~~lk~~~ 733 (1146)
T PRK12999 690 LDYYVDLAKELEKAGAHILAIKDMAG-----------LLKPAAAYELVSALKEEV 733 (1146)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccC-----------CCCHHHHHHHHHHHHHHc
Confidence 34466888999999999999999874 677788888888888764
No 145
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=71.06 E-value=15 Score=30.56 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhCceEEEec
Q 037554 7 LNVQRTVKDLVAAGAAGCFLE 27 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iE 27 (173)
.+....++.++++|+.+|+|+
T Consensus 148 ~~~~~~a~~l~~aGad~i~Vd 168 (231)
T TIGR00736 148 LDELIDALNLVDDGFDGIHVD 168 (231)
T ss_pred chHHHHHHHHHHcCCCEEEEe
Confidence 456688899999999999994
No 146
>PRK04302 triosephosphate isomerase; Provisional
Probab=70.98 E-value=30 Score=28.02 Aligned_cols=94 Identities=13% Similarity=0.055 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE-------------ecCCcccc
Q 037554 9 VQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL-------------ARADASFV 75 (173)
Q Consensus 9 v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I-------------AGAD~ifv 75 (173)
-..+++.+.++|+.|+-|-|... ..+.+|...+++++.+. +-+.++ .|.|.|.+
T Consensus 74 g~~~~~~l~~~G~~~vii~~ser-----------~~~~~e~~~~v~~a~~~--Gl~~I~~v~~~~~~~~~~~~~~~~I~~ 140 (223)
T PRK04302 74 GHILPEAVKDAGAVGTLINHSER-----------RLTLADIEAVVERAKKL--GLESVVCVNNPETSAAAAALGPDYVAV 140 (223)
T ss_pred hhhHHHHHHHcCCCEEEEecccc-----------ccCHHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHhcCCCCEEEE
Confidence 34568899999999999888531 13556777777777663 222222 67777764
Q ss_pred cC-----C------CCHHHHhhh-----h---cCC---------CCCHHHHHhCCccEEEechHHHHH
Q 037554 76 EA-----P------RNDNEANWV-----W---GHT---------LHTPEELKAMGFHLTVHPLTALYA 115 (173)
Q Consensus 76 ~g-----~------~~~e~i~~i-----~---g~p---------~~~~~eL~~lGv~~v~~~~~~~~a 115 (173)
.. . .+++.+.++ . ..| .-..+++.+.|++-|..|...+++
T Consensus 141 ~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~ 208 (223)
T PRK04302 141 EPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVKA 208 (223)
T ss_pred eCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCC
Confidence 22 1 134555443 1 123 234566778999999999888754
No 147
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=70.76 E-value=36 Score=29.11 Aligned_cols=35 Identities=26% Similarity=0.224 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHH
Q 037554 9 VQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAA 51 (173)
Q Consensus 9 v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~ 51 (173)
+.+.++.+.++|+.+|.|-|+.. +..++|++++.+
T Consensus 182 ~~~~~~~~~~~Gad~I~i~dp~a--------~~~~lsp~~f~e 216 (340)
T TIGR01463 182 VIAYAKAMVEAGADVIAIADPFA--------SSDLISPETYKE 216 (340)
T ss_pred HHHHHHHHHHcCCCEEEecCCcc--------CccccCHHHHHH
Confidence 45566778899999999999753 235778875553
No 148
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=70.67 E-value=49 Score=25.87 Aligned_cols=92 Identities=14% Similarity=0.065 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE---------ecCCcccccC
Q 037554 7 LNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL---------ARADASFVEA 77 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I---------AGAD~ifv~g 77 (173)
.+....++.+.++|+..|||-....+ + ......+.+++..... .+..+++ +|||+|-++.
T Consensus 21 ~~~~~~~~~~~~~gv~~v~lr~~~~~-------~---~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~a~~~gad~vh~~~ 89 (212)
T PRK00043 21 RDLLEVVEAALEGGVTLVQLREKGLD-------T---RERLELARALKELCRR-YGVPLIVNDRVDLALAVGADGVHLGQ 89 (212)
T ss_pred ccHHHHHHHHHhcCCCEEEEeCCCCC-------H---HHHHHHHHHHHHHHHH-hCCeEEEeChHHHHHHcCCCEEecCc
Confidence 34667889999999999999765321 1 1122344444433332 2344555 8999987755
Q ss_pred CC-CHHHHhhh-h-----cCCCCCH---HHHHhCCccEEEec
Q 037554 78 PR-NDNEANWV-W-----GHTLHTP---EELKAMGFHLTVHP 109 (173)
Q Consensus 78 ~~-~~e~i~~i-~-----g~p~~~~---~eL~~lGv~~v~~~ 109 (173)
.. ....++.+ . |....|. .+..+.|++.|.++
T Consensus 90 ~~~~~~~~~~~~~~~~~~g~~~~t~~e~~~a~~~gaD~v~~~ 131 (212)
T PRK00043 90 DDLPVADARALLGPDAIIGLSTHTLEEAAAALAAGADYVGVG 131 (212)
T ss_pred ccCCHHHHHHHcCCCCEEEEeCCCHHHHHHHhHcCCCEEEEC
Confidence 32 23445544 1 2112343 44456799999875
No 149
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=70.18 E-value=11 Score=31.98 Aligned_cols=93 Identities=14% Similarity=0.070 Sum_probs=57.2
Q ss_pred HHHHHhCceE--EEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcC--CCCEEE-------------------ecC
Q 037554 14 KDLVAAGAAG--CFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIG--DSDFVL-------------------ARA 70 (173)
Q Consensus 14 ~~~~~aGvag--i~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~--~~d~~I-------------------AGA 70 (173)
.+....|+.. +.+||.+.|. ..++.-..+.....+.. +..++| +|+
T Consensus 18 ~ka~~~gaD~vilDLEDav~~~-----------~k~~AR~~v~~~l~~~~~~~~~~~VRIn~~~~~~~~~di~~~l~~g~ 86 (288)
T TIGR01588 18 SDAFIYGADSVMFDLEDAVSLA-----------EKDSARLLVYEALQTPDYGDTETVVRINGLDTPFGLADIKAVVKAGV 86 (288)
T ss_pred HhhhhcCCCEEEEecccCCCcc-----------hHHHHHHHHHHHHhccCCCCCEEEEEECCCCChhHHHHHHHHHhcCC
Confidence 4444455544 5689998752 23444444444443322 345566 899
Q ss_pred CcccccCCCCHHHHhhh-------h---cC--------C-------CCCHHHHHh--CCccEEEechHHHHHHH
Q 037554 71 DASFVEAPRNDNEANWV-------W---GH--------T-------LHTPEELKA--MGFHLTVHPLTALYASA 117 (173)
Q Consensus 71 D~ifv~g~~~~e~i~~i-------~---g~--------p-------~~~~~eL~~--lGv~~v~~~~~~~~aa~ 117 (173)
|+|++|-+.+.++++.+ + +. | ...++++.. -|+..+++|+.=+.+.+
T Consensus 87 ~givlPKv~s~~~v~~~~~~l~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eIa~a~~rv~~l~~G~~Dls~~l 160 (288)
T TIGR01588 87 DVVRLPKTDTAEDIHELEKLIERIEKEIGREVGSTKLMAAIESALGVVNAVEIARASKRLMGIALGAEDYVTDM 160 (288)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeeEEEEeCCHHHHHhHHHHHhcCCcceEEEeCHHHHHHHc
Confidence 99999999999998887 1 11 1 135677773 37888888876555444
No 150
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=70.14 E-value=41 Score=30.64 Aligned_cols=118 Identities=16% Similarity=0.073 Sum_probs=70.1
Q ss_pred CCCC-hHH-HHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE------------
Q 037554 2 GGGN-ALN-VQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL------------ 67 (173)
Q Consensus 2 GyG~-~~~-v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I------------ 67 (173)
||.+ |.| +...|++..++|+.-|+|-|...+- ..+..-|+.|++.-....+.|
T Consensus 89 G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~-------------~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~ 155 (448)
T PRK12331 89 GYRNYADDVVESFVQKSVENGIDIIRIFDALNDV-------------RNLETAVKATKKAGGHAQVAISYTTSPVHTIDY 155 (448)
T ss_pred ccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH-------------HHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHH
Confidence 5553 445 4567888899999999999976431 122223344443311111111
Q ss_pred ----------ecCCcccc---cCCCCHHHHhhh-----h--cCC---------C---CCHHHHHhCCccEEEechHHH--
Q 037554 68 ----------ARADASFV---EAPRNDNEANWV-----W--GHT---------L---HTPEELKAMGFHLTVHPLTAL-- 113 (173)
Q Consensus 68 ----------AGAD~ifv---~g~~~~e~i~~i-----~--g~p---------~---~~~~eL~~lGv~~v~~~~~~~-- 113 (173)
+|||.|.+ -|+-+++++.++ . +.| . -+.-.-.+.|+++|-.....+
T Consensus 156 ~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~~pi~~H~Hnt~GlA~AN~laAieaGad~vD~sv~glg~ 235 (448)
T PRK12331 156 FVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVTVPLEVHTHATSGIAEMTYLKAIEAGADIIDTAISPFAG 235 (448)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHHHHHcCCCEEEeeccccCC
Confidence 89999887 345677777666 1 122 1 233345688999887665554
Q ss_pred HHHHHHHHHHHHHHHHcCC
Q 037554 114 YASARALVDVLKTLKESGT 132 (173)
Q Consensus 114 ~aa~~a~~~~~~~l~~~g~ 132 (173)
++...++...+..|...|.
T Consensus 236 gaGN~~tE~lv~~L~~~g~ 254 (448)
T PRK12331 236 GTSQPATESMVAALQDLGY 254 (448)
T ss_pred CcCCHhHHHHHHHHHhcCC
Confidence 5666667777777665543
No 151
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=69.61 E-value=69 Score=29.00 Aligned_cols=65 Identities=18% Similarity=0.281 Sum_probs=44.2
Q ss_pred ecCCcccccCC-C-----CHHHHhhh-------h-c------------CCCCCHHHHHhCCccEEEec-------hHHHH
Q 037554 68 ARADASFVEAP-R-----NDNEANWV-------W-G------------HTLHTPEELKAMGFHLTVHP-------LTALY 114 (173)
Q Consensus 68 AGAD~ifv~g~-~-----~~e~i~~i-------~-g------------~p~~~~~eL~~lGv~~v~~~-------~~~~~ 114 (173)
+|||.+.++++ - +.+++.++ | + +|..-.+-+..+|-+.|... +.-..
T Consensus 297 aGaD~~~~~t~~~Gk~~~~~~~~~~~~~~~~~~~~~~k~~~Pv~sGG~~~~~vp~~~~~~G~Dvil~~GGGi~gHp~G~~ 376 (412)
T TIGR03326 297 IGVDQLHTGTAGVGKLEGGKEDTKQINDFLRQKWHHIKPVFPVSSGGLHPGLVPPLIDALGKDLVIQAGGGVHGHPDGPR 376 (412)
T ss_pred cCCCeeeeCCCccCCCCCCHHHHHHHHHHHhCcccCCCCceEecCCCCChhHHHHHHHhcCCceEEecCCccccCCCChh
Confidence 99999999887 2 56666666 1 1 22233567788898766543 33346
Q ss_pred HHHHHHHHHHHHHHHcCC
Q 037554 115 ASARALVDVLKTLKESGT 132 (173)
Q Consensus 115 aa~~a~~~~~~~l~~~g~ 132 (173)
+-.++++++.+...+..+
T Consensus 377 aGa~A~rqA~ea~~~G~~ 394 (412)
T TIGR03326 377 AGAKALRAAIDAIIEGIS 394 (412)
T ss_pred hHHHHHHHHHHHHHcCCC
Confidence 788899999999885433
No 152
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=68.85 E-value=22 Score=30.01 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhCceEEEecc
Q 037554 7 LNVQRTVKDLVAAGAAGCFLED 28 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iED 28 (173)
.++...++.++++|+.||++-.
T Consensus 169 ~~~~~~a~~l~~~G~d~i~~~n 190 (301)
T PRK07259 169 TDIVEIAKAAEEAGADGLSLIN 190 (301)
T ss_pred hhHHHHHHHHHHcCCCEEEEEc
Confidence 4677888999999999998743
No 153
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=68.45 E-value=18 Score=31.34 Aligned_cols=73 Identities=16% Similarity=0.089 Sum_probs=44.0
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCC-CccCCCCCCCcc-cCHHHHHHHHHHHHHhcCCCCEEE---------------
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSW-PKKCGHMHGKQI-IPAEEHAAKIASARDAIGDSDFVL--------------- 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~-pKrcg~~~g~~l-~~~ee~~~kI~Aa~~a~~~~d~~I--------------- 67 (173)
+|....++++.+.++|+.||.|-=... ++.+....|..+ -.++-..+=|++++++. +..+.+
T Consensus 75 ~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v-~~pVsvKiR~g~~~~~t~~~~ 153 (333)
T PRK11815 75 DPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAV-SIPVTVKHRIGIDDQDSYEFL 153 (333)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHc-CCceEEEEEeeeCCCcCHHHH
Confidence 688999999999999999997764331 222221123233 34554444555555542 111222
Q ss_pred ---------ecCCcccccCC
Q 037554 68 ---------ARADASFVEAP 78 (173)
Q Consensus 68 ---------AGAD~ifv~g~ 78 (173)
+|+|.|-+++.
T Consensus 154 ~~~~~~l~~aG~d~i~vh~R 173 (333)
T PRK11815 154 CDFVDTVAEAGCDTFIVHAR 173 (333)
T ss_pred HHHHHHHHHhCCCEEEEcCC
Confidence 89999998863
No 154
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=68.32 E-value=26 Score=29.33 Aligned_cols=64 Identities=17% Similarity=0.155 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcC---CCCEEE-------------e
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIG---DSDFVL-------------A 68 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~---~~d~~I-------------A 68 (173)
++..+.+.++++.+.||.=|-|--... .++...++.++-.+|+..++++.. +..+.| +
T Consensus 21 ~~~~~~~~a~~~~~~GA~iIDIG~~st------~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiDT~~~~vi~~al~~ 94 (257)
T TIGR01496 21 SVDKAVAHAERMLEEGADIIDVGGEST------RPGADRVSPEEELNRVVPVIKALRDQPDVPISVDTYRAEVARAALEA 94 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCC------CCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCCHHHHHHHHHc
Confidence 467888999999999999998832111 123456777877777777776543 233444 8
Q ss_pred cCCccc
Q 037554 69 RADASF 74 (173)
Q Consensus 69 GAD~if 74 (173)
|+|+|-
T Consensus 95 G~~iIN 100 (257)
T TIGR01496 95 GADIIN 100 (257)
T ss_pred CCCEEE
Confidence 999876
No 155
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=68.27 E-value=72 Score=26.86 Aligned_cols=65 Identities=14% Similarity=0.158 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHHHHhC-ceEEEeccCCCCccCCCCC--CCc-ccCHHHHHHHHHHHHHhcCCCCEEE-------------
Q 037554 5 NALNVQRTVKDLVAAG-AAGCFLEDQSWPKKCGHMH--GKQ-IIPAEEHAAKIASARDAIGDSDFVL------------- 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aG-vagi~iEDq~~pKrcg~~~--g~~-l~~~ee~~~kI~Aa~~a~~~~d~~I------------- 67 (173)
++....+.++++.++| +.||.|-= .|.|.. |.. .-+++...+-|++++++. +..+++
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~-----~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~a 175 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNI-----SCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTPNVTDIVEIA 175 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEEC-----CCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCCCchhHHHHH
Confidence 4678889999999999 99997642 233332 112 234555555666666553 333444
Q ss_pred -----ecCCcccc
Q 037554 68 -----ARADASFV 75 (173)
Q Consensus 68 -----AGAD~ifv 75 (173)
+|+|+|-+
T Consensus 176 ~~l~~~G~d~i~~ 188 (301)
T PRK07259 176 KAAEEAGADGLSL 188 (301)
T ss_pred HHHHHcCCCEEEE
Confidence 89998754
No 156
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=68.10 E-value=56 Score=30.32 Aligned_cols=117 Identities=12% Similarity=0.064 Sum_probs=69.7
Q ss_pred CCCC-hHH-HHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE------------
Q 037554 2 GGGN-ALN-VQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL------------ 67 (173)
Q Consensus 2 GyG~-~~~-v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I------------ 67 (173)
||.+ +.| +...|+...+.|+.-|+|=|.... ++.+..-|++++++.......|
T Consensus 90 Gy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lnd-------------v~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~ 156 (499)
T PRK12330 90 GYRHYEDEVVDRFVEKSAENGMDVFRVFDALND-------------PRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEG 156 (499)
T ss_pred CccCcchhHHHHHHHHHHHcCCCEEEEEecCCh-------------HHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHH
Confidence 6775 444 556788999999999999997642 2333333444444322111111
Q ss_pred ----------ecCCcccc---cCCCCHHHHhhh-----h--c--CC---------C---CCHHHHHhCCccEEEechHHH
Q 037554 68 ----------ARADASFV---EAPRNDNEANWV-----W--G--HT---------L---HTPEELKAMGFHLTVHPLTAL 113 (173)
Q Consensus 68 ----------AGAD~ifv---~g~~~~e~i~~i-----~--g--~p---------~---~~~~eL~~lGv~~v~~~~~~~ 113 (173)
+|||.|.+ -|+-+++++.++ . + .| . .+.-.-.+.|+++|-.....+
T Consensus 157 ~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDtai~Gl 236 (499)
T PRK12330 157 FVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDTAISSM 236 (499)
T ss_pred HHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEeecccc
Confidence 89999887 345678777666 1 1 12 1 123345688999886654443
Q ss_pred --HHHHHHHHHHHHHHHHcC
Q 037554 114 --YASARALVDVLKTLKESG 131 (173)
Q Consensus 114 --~aa~~a~~~~~~~l~~~g 131 (173)
++...++...+..|...|
T Consensus 237 g~~aGn~atE~vv~~L~~~g 256 (499)
T PRK12330 237 SLGPGHNPTESLVEMLEGTG 256 (499)
T ss_pred cccccchhHHHHHHHHHhcC
Confidence 555566667777666554
No 157
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=67.97 E-value=12 Score=33.24 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhCceEEEeccCC
Q 037554 7 LNVQRTVKDLVAAGAAGCFLEDQS 30 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iEDq~ 30 (173)
.++...++.++++||.||.+-..+
T Consensus 180 ~~~~~~a~~~~~~Gadgi~~~Nt~ 203 (420)
T PRK08318 180 TDIREPARAAKRGGADAVSLINTI 203 (420)
T ss_pred ccHHHHHHHHHHCCCCEEEEeccc
Confidence 457788889999999999964443
No 158
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=67.66 E-value=73 Score=26.67 Aligned_cols=65 Identities=22% Similarity=0.254 Sum_probs=42.1
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCC--Cc-ccCHHHHHHHHHHHHHhcCCCCEEE--------------
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHG--KQ-IIPAEEHAAKIASARDAIGDSDFVL-------------- 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g--~~-l~~~ee~~~kI~Aa~~a~~~~d~~I-------------- 67 (173)
++....+.+++++++|+.+|.|-= .|.+..+ .. ..+++...+-|++++++. +..+++
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~-----~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~-~~Pv~vKl~~~~~~~~~~a~ 173 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNI-----SCPNVKGGGMAFGTDPEAVAEIVKAVKKAT-DVPVIVKLTPNVTDIVEIAR 173 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEC-----CCCCCCCCcccccCCHHHHHHHHHHHHhcc-CCCEEEEeCCCchhHHHHHH
Confidence 467788999999999999997751 2444432 22 345666666666666653 233443
Q ss_pred ----ecCCcccc
Q 037554 68 ----ARADASFV 75 (173)
Q Consensus 68 ----AGAD~ifv 75 (173)
+|||+|-+
T Consensus 174 ~~~~~G~d~i~~ 185 (296)
T cd04740 174 AAEEAGADGLTL 185 (296)
T ss_pred HHHHcCCCEEEE
Confidence 89998754
No 159
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=66.84 E-value=80 Score=26.91 Aligned_cols=29 Identities=7% Similarity=-0.010 Sum_probs=20.4
Q ss_pred CHHHHHhCCccEEEechHHHHHHHHHHHH
Q 037554 94 TPEELKAMGFHLTVHPLTALYASARALVD 122 (173)
Q Consensus 94 ~~~eL~~lGv~~v~~~~~~~~aa~~a~~~ 122 (173)
.+.++.+.|++-|-+.+.++.+...++++
T Consensus 215 ~~~~~i~~G~~kinv~T~i~~a~~~a~~~ 243 (281)
T PRK06806 215 DFKKCIQHGIRKINVATATFNSVITAVNN 243 (281)
T ss_pred HHHHHHHcCCcEEEEhHHHHHHHHHHHHH
Confidence 45667889999999988887754444433
No 160
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=66.80 E-value=42 Score=27.72 Aligned_cols=85 Identities=14% Similarity=0.103 Sum_probs=58.2
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE----------------e
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL----------------A 68 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I----------------A 68 (173)
++.+....++.+++.|+-.|-|-=.+ ....+-|+++++.. ++++| |
T Consensus 23 ~~e~a~~~a~Ali~gGi~~IEITl~s----------------p~a~e~I~~l~~~~--p~~lIGAGTVL~~~q~~~a~~a 84 (211)
T COG0800 23 DVEEALPLAKALIEGGIPAIEITLRT----------------PAALEAIRALAKEF--PEALIGAGTVLNPEQARQAIAA 84 (211)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEecCC----------------CCHHHHHHHHHHhC--cccEEccccccCHHHHHHHHHc
Confidence 46778888999999999999875432 12445566666554 47777 9
Q ss_pred cCCcccccCCCCHHHHhhhh--c---CC-CCCH---HHHHhCCccEEEe
Q 037554 69 RADASFVEAPRNDNEANWVW--G---HT-LHTP---EELKAMGFHLTVH 108 (173)
Q Consensus 69 GAD~ifv~g~~~~e~i~~i~--g---~p-~~~~---~eL~~lGv~~v~~ 108 (173)
||+.|+-|++ +++.++.-. + .| ..|+ ....++|++.+=+
T Consensus 85 Ga~fiVsP~~-~~ev~~~a~~~~ip~~PG~~TptEi~~Ale~G~~~lK~ 132 (211)
T COG0800 85 GAQFIVSPGL-NPEVAKAANRYGIPYIPGVATPTEIMAALELGASALKF 132 (211)
T ss_pred CCCEEECCCC-CHHHHHHHHhCCCcccCCCCCHHHHHHHHHcChhheee
Confidence 9999998885 666666663 3 33 2444 4456788887654
No 161
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=66.76 E-value=20 Score=36.55 Aligned_cols=43 Identities=16% Similarity=0.096 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc
Q 037554 7 LNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~ 60 (173)
.-+.+.+++++++|+.-|+|-|..+ +..+.++..-|++.++.-
T Consensus 689 ~y~~~~ak~l~~~Gad~I~ikDt~G-----------ll~P~~~~~Lv~~lk~~~ 731 (1143)
T TIGR01235 689 KYYTNLAVELEKAGAHILGIKDMAG-----------LLKPAAAKLLIKALREKT 731 (1143)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCcC-----------CcCHHHHHHHHHHHHHhc
Confidence 4466889999999999999999874 567778888888877654
No 162
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=66.68 E-value=49 Score=29.19 Aligned_cols=92 Identities=18% Similarity=0.179 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE---------ecCCcccccCC
Q 037554 8 NVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL---------ARADASFVEAP 78 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I---------AGAD~ifv~g~ 78 (173)
+....+....++|+..|++-+...+ . ....+.+.+|+..++.. +.-|+| .|||+|-++.
T Consensus 158 ~ll~~l~~al~~Gv~~VQLR~K~~~-------~---~~~~~~a~~L~~l~~~~-~~~lIIND~vdlAl~~~aDGVHLgq- 225 (347)
T PRK02615 158 NLLEVVEAALKGGVTLVQYRDKTAD-------D---RQRLEEAKKLKELCHRY-GALFIVNDRVDIALAVDADGVHLGQ- 225 (347)
T ss_pred hHHHHHHHHHHcCCCEEEECCCCCC-------H---HHHHHHHHHHHHHHHHh-CCeEEEeChHHHHHHcCCCEEEeCh-
Confidence 3566789999999999999876542 1 12345566777666554 345666 9999998843
Q ss_pred CC--HHHHhhhh------cCCCCCHHHHH---hCCccEEEechH
Q 037554 79 RN--DNEANWVW------GHTLHTPEELK---AMGFHLTVHPLT 111 (173)
Q Consensus 79 ~~--~e~i~~i~------g~p~~~~~eL~---~lGv~~v~~~~~ 111 (173)
.+ ..+.+++- |....+.+++. +.|++.|.+|+.
T Consensus 226 ~dl~~~~aR~llg~~~iIG~S~Hs~~e~~~A~~~GaDYI~lGPv 269 (347)
T PRK02615 226 EDLPLAVARQLLGPEKIIGRSTTNPEEMAKAIAEGADYIGVGPV 269 (347)
T ss_pred hhcCHHHHHHhcCCCCEEEEecCCHHHHHHHHHcCCCEEEECCC
Confidence 33 45555541 33334565544 479999988753
No 163
>COG3246 Uncharacterized conserved protein [Function unknown]
Probab=66.59 E-value=26 Score=30.41 Aligned_cols=54 Identities=22% Similarity=0.255 Sum_probs=41.1
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I 67 (173)
.|.++++.+....+|||+-+||-=- |+ .|++..+++.+.+-+.+++++ ++|.+|
T Consensus 27 TP~qIA~~a~~aa~AGAai~HlHvR--p~-----dG~pt~d~~~yr~~l~rIr~~--~~D~vi 80 (298)
T COG3246 27 TPDQIASDAIAAAKAGAAILHLHVR--PE-----DGRPTLDPEAYREVLERIRAA--VGDAVI 80 (298)
T ss_pred CHHHHHHHHHHHHhcCcceEEEEec--CC-----CCCcccCHHHHHHHHHHHHcc--CCCeEE
Confidence 3689999999999999999998533 32 467778888887766666655 467777
No 164
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=66.56 E-value=69 Score=26.04 Aligned_cols=98 Identities=13% Similarity=0.113 Sum_probs=62.4
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE----------------e
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL----------------A 68 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I----------------A 68 (173)
++.++...++.+.+.|+..|-|-=.+ | ...+.++++ ++.. +++.| |
T Consensus 14 ~~~~a~~ia~al~~gGi~~iEit~~t-p------------~a~~~I~~l---~~~~--~~~~vGAGTVl~~e~a~~ai~a 75 (201)
T PRK06015 14 DVEHAVPLARALAAGGLPAIEITLRT-P------------AALDAIRAV---AAEV--EEAIVGAGTILNAKQFEDAAKA 75 (201)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC-c------------cHHHHHHHH---HHHC--CCCEEeeEeCcCHHHHHHHHHc
Confidence 46788899999999999988876543 1 122344443 3222 57777 9
Q ss_pred cCCcccccCCCCHHHHhhhh--c---CC-CCCH---HHHHhCCccEEEechH-HH--HHHHHHHH
Q 037554 69 RADASFVEAPRNDNEANWVW--G---HT-LHTP---EELKAMGFHLTVHPLT-AL--YASARALV 121 (173)
Q Consensus 69 GAD~ifv~g~~~~e~i~~i~--g---~p-~~~~---~eL~~lGv~~v~~~~~-~~--~aa~~a~~ 121 (173)
||+-|+-|+. +++.++.-. + .| .+|+ ....++|++.|-+-+. .+ -.-+++++
T Consensus 76 GA~FivSP~~-~~~vi~~a~~~~i~~iPG~~TptEi~~A~~~Ga~~vK~FPa~~~GG~~yikal~ 139 (201)
T PRK06015 76 GSRFIVSPGT-TQELLAAANDSDVPLLPGAATPSEVMALREEGYTVLKFFPAEQAGGAAFLKALS 139 (201)
T ss_pred CCCEEECCCC-CHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECCchhhCCHHHHHHHH
Confidence 9999988874 666666552 3 34 3455 4557899998866543 33 24444444
No 165
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=66.42 E-value=15 Score=31.47 Aligned_cols=43 Identities=19% Similarity=0.119 Sum_probs=33.1
Q ss_pred ecCCcccccCCCCHHHHhhh-h-----c-CC-----------CCCHHHHHhCCccEEEechH
Q 037554 68 ARADASFVEAPRNDNEANWV-W-----G-HT-----------LHTPEELKAMGFHLTVHPLT 111 (173)
Q Consensus 68 AGAD~ifv~g~~~~e~i~~i-~-----g-~p-----------~~~~~eL~~lGv~~v~~~~~ 111 (173)
+|||+|..... ++++++++ + + .| .-++.++++.|++.+|.|..
T Consensus 201 agaDiI~LDn~-~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is~gal 261 (278)
T PRK08385 201 AGADIIMLDNM-TPEEIREVIEALKREGLRERVKIEVSGGITPENIEEYAKLDVDVISLGAL 261 (278)
T ss_pred cCcCEEEECCC-CHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHcCCCEEEeChh
Confidence 99999999886 77777766 1 2 23 13678999999999999853
No 166
>PRK08185 hypothetical protein; Provisional
Probab=66.35 E-value=84 Score=26.93 Aligned_cols=33 Identities=15% Similarity=0.108 Sum_probs=26.9
Q ss_pred CHHHHHhCCccEEEechHHHHHHHHHHHHHHHH
Q 037554 94 TPEELKAMGFHLTVHPLTALYASARALVDVLKT 126 (173)
Q Consensus 94 ~~~eL~~lGv~~v~~~~~~~~aa~~a~~~~~~~ 126 (173)
.+....++|++-|-+++-+..+.+.++++.+.+
T Consensus 213 ~~~~ai~~GI~KiNi~T~l~~a~~~~~~~~~~~ 245 (283)
T PRK08185 213 EIAESVQLGVGKINISSDMKYAFFKKVREILSD 245 (283)
T ss_pred HHHHHHHCCCeEEEeChHHHHHHHHHHHHHHHh
Confidence 345566899999999999999999988877643
No 167
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=66.32 E-value=19 Score=30.72 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=22.2
Q ss_pred CCCCh---HHHHHHHHHHHHhCceEEEecc
Q 037554 2 GGGNA---LNVQRTVKDLVAAGAAGCFLED 28 (173)
Q Consensus 2 GyG~~---~~v~rtv~~~~~aGvagi~iED 28 (173)
+|-|+ ..+.+.+++..++|+.|+.|=|
T Consensus 101 ~Y~Npi~~~Gie~F~~~~~~~GvdGlivpD 130 (265)
T COG0159 101 TYYNPIFNYGIEKFLRRAKEAGVDGLLVPD 130 (265)
T ss_pred EeccHHHHhhHHHHHHHHHHcCCCEEEeCC
Confidence 45665 4567789999999999999999
No 168
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=66.22 E-value=26 Score=32.48 Aligned_cols=45 Identities=29% Similarity=0.142 Sum_probs=36.1
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~ 60 (173)
++.-+.+.++.+.++|+.-|+|-|.++ +..|+++.+.|+..++..
T Consensus 156 d~~~l~~~~~~~~~~Gad~i~l~DTvG-----------~~~P~~v~~li~~l~~~~ 200 (524)
T PRK12344 156 NPEYALATLKAAAEAGADWVVLCDTNG-----------GTLPHEVAEIVAEVRAAP 200 (524)
T ss_pred CHHHHHHHHHHHHhCCCCeEEEccCCC-----------CcCHHHHHHHHHHHHHhc
Confidence 356678889999999999999999874 556778888888777653
No 169
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=65.53 E-value=13 Score=31.75 Aligned_cols=44 Identities=14% Similarity=0.037 Sum_probs=33.5
Q ss_pred ecCCcccccCCCCHHHHhhh--h---cCC--------C---CCHHHHHhCCccEEEechHH
Q 037554 68 ARADASFVEAPRNDNEANWV--W---GHT--------L---HTPEELKAMGFHLTVHPLTA 112 (173)
Q Consensus 68 AGAD~ifv~g~~~~e~i~~i--~---g~p--------~---~~~~eL~~lGv~~v~~~~~~ 112 (173)
+|||.|....+ +++++++. . +.| . -++.++.+.|+..+|.|...
T Consensus 201 ~GaDiI~LDn~-~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ni~~ya~~GvD~IsvG~l~ 260 (273)
T PRK05848 201 AGADIVMCDNM-SVEEIKEVVAYRNANYPHVLLEASGNITLENINAYAKSGVDAISSGSLI 260 (273)
T ss_pred cCCCEEEECCC-CHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHHcCCCEEEeChhh
Confidence 99999999875 78887777 1 123 1 35688999999999998643
No 170
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=65.20 E-value=19 Score=31.34 Aligned_cols=24 Identities=8% Similarity=0.166 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhCceEEEeccCC
Q 037554 7 LNVQRTVKDLVAAGAAGCFLEDQS 30 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iEDq~ 30 (173)
.++...++.++++||.||.+--.+
T Consensus 225 ~~~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 225 EELDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred HHHHHHHHHHHHhCCcEEEEeCCc
Confidence 468889999999999999998765
No 171
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=65.00 E-value=71 Score=26.10 Aligned_cols=87 Identities=11% Similarity=-0.069 Sum_probs=56.1
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE----------------e
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL----------------A 68 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I----------------A 68 (173)
++.++.+.++.+.+.|+.-|-|-=.. .+..+-|+..++.. +++.| |
T Consensus 25 ~~~~a~~i~~al~~~Gi~~iEitl~~----------------~~~~~~I~~l~~~~--p~~~IGAGTVl~~~~a~~a~~a 86 (212)
T PRK05718 25 KLEDAVPLAKALVAGGLPVLEVTLRT----------------PAALEAIRLIAKEV--PEALIGAGTVLNPEQLAQAIEA 86 (212)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC----------------ccHHHHHHHHHHHC--CCCEEEEeeccCHHHHHHHHHc
Confidence 46778888899999999888776211 12333344444332 56666 9
Q ss_pred cCCcccccCCCCHHHHhhhh--c---CCC-CC---HHHHHhCCccEEEech
Q 037554 69 RADASFVEAPRNDNEANWVW--G---HTL-HT---PEELKAMGFHLTVHPL 110 (173)
Q Consensus 69 GAD~ifv~g~~~~e~i~~i~--g---~p~-~~---~~eL~~lGv~~v~~~~ 110 (173)
|||.+..|+. +++.++... + .|. .| +.+..++|++.|-+-+
T Consensus 87 GA~FivsP~~-~~~vi~~a~~~~i~~iPG~~TptEi~~a~~~Ga~~vKlFP 136 (212)
T PRK05718 87 GAQFIVSPGL-TPPLLKAAQEGPIPLIPGVSTPSELMLGMELGLRTFKFFP 136 (212)
T ss_pred CCCEEECCCC-CHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEEcc
Confidence 9999999986 445555542 3 332 34 4566789999887744
No 172
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=64.84 E-value=51 Score=26.68 Aligned_cols=86 Identities=14% Similarity=0.108 Sum_probs=55.5
Q ss_pred HHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHH---HHHHHHHHHhcCCCCEEE---------ecCCcccccCC
Q 037554 11 RTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEH---AAKIASARDAIGDSDFVL---------ARADASFVEAP 78 (173)
Q Consensus 11 rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~---~~kI~Aa~~a~~~~d~~I---------AGAD~ifv~g~ 78 (173)
+.++...++|+..|+|=+... |.+++ +.+|....+.. +..++| .|||+|-+..
T Consensus 23 ~~l~~~l~~G~~~vqLR~k~~-------------~~~~~~~la~~l~~~~~~~-~~~liInd~~~lA~~~~adGVHlg~- 87 (211)
T PRK03512 23 QWIERLLDAGVRTLQLRIKDR-------------RDEEVEADVVAAIALGRRY-QARLFINDYWRLAIKHQAYGVHLGQ- 87 (211)
T ss_pred HHHHHHHhCCCCEEEEcCCCC-------------CHHHHHHHHHHHHHHHHHh-CCeEEEeCHHHHHHHcCCCEEEcCh-
Confidence 358899999999999987643 33444 44444444433 355666 7999997743
Q ss_pred CC--HHHHhhh---h---cCCCCCHHHHH---hCCccEEEechH
Q 037554 79 RN--DNEANWV---W---GHTLHTPEELK---AMGFHLTVHPLT 111 (173)
Q Consensus 79 ~~--~e~i~~i---~---g~p~~~~~eL~---~lGv~~v~~~~~ 111 (173)
++ ..+++++ + |....+.+|+. +.|++.+.+|+.
T Consensus 88 ~d~~~~~~r~~~~~~~~iG~S~H~~~e~~~A~~~gaDYi~lgpv 131 (211)
T PRK03512 88 EDLETADLNAIRAAGLRLGVSTHDDMEIDVALAARPSYIALGHV 131 (211)
T ss_pred HhCCHHHHHHhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECCc
Confidence 33 2556654 1 33345666655 479999999864
No 173
>PRK09389 (R)-citramalate synthase; Provisional
Probab=64.75 E-value=27 Score=32.16 Aligned_cols=44 Identities=16% Similarity=0.090 Sum_probs=35.5
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHh
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDA 59 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a 59 (173)
++.-+.+.++.+.++|+.-|+|-|.++ ...|+++.+.|+..++.
T Consensus 141 ~~~~l~~~~~~~~~~Ga~~i~l~DTvG-----------~~~P~~~~~lv~~l~~~ 184 (488)
T PRK09389 141 DLDFLKELYKAGIEAGADRICFCDTVG-----------ILTPEKTYELFKRLSEL 184 (488)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecCCC-----------CcCHHHHHHHHHHHHhh
Confidence 566788999999999999999999874 45667788777777654
No 174
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=64.50 E-value=80 Score=29.98 Aligned_cols=117 Identities=15% Similarity=0.025 Sum_probs=69.7
Q ss_pred CCCC-hHHHH-HHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE------------
Q 037554 2 GGGN-ALNVQ-RTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL------------ 67 (173)
Q Consensus 2 GyG~-~~~v~-rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I------------ 67 (173)
||++ |.||. ..|+...+.|+.=+-|=|... +.+.+..-|++++++-......|
T Consensus 89 Gy~~~~d~vv~~~v~~a~~~Gidv~Rifd~ln-------------d~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~ 155 (596)
T PRK14042 89 GYRNYADDVVRAFVKLAVNNGVDVFRVFDALN-------------DARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDN 155 (596)
T ss_pred ccccCChHHHHHHHHHHHHcCCCEEEEcccCc-------------chHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHH
Confidence 7775 66655 588889999999999988642 33444444555554321111111
Q ss_pred ----------ecCCcccc---cCCCCHHHHhhh-----h--cCC---------C---CCHHHHHhCCccEEEechHHH--
Q 037554 68 ----------ARADASFV---EAPRNDNEANWV-----W--GHT---------L---HTPEELKAMGFHLTVHPLTAL-- 113 (173)
Q Consensus 68 ----------AGAD~ifv---~g~~~~e~i~~i-----~--g~p---------~---~~~~eL~~lGv~~v~~~~~~~-- 113 (173)
+|||.|.+ -|+-+++++.++ . +.| . .+.-.-.++|+++|-.....+
T Consensus 156 ~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~~ipi~~H~Hnt~Gla~an~laAieaGad~iD~ai~glGg 235 (596)
T PRK14042 156 FLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQATGLPVHLHSHSTSGLASICHYEAVLAGCNHIDTAISSFSG 235 (596)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhcCCEEEEEeCCCCCcHHHHHHHHHHhCCCEEEeccccccC
Confidence 79998887 345677777666 1 112 1 233445688998886665544
Q ss_pred HHHHHHHHHHHHHHHHcC
Q 037554 114 YASARALVDVLKTLKESG 131 (173)
Q Consensus 114 ~aa~~a~~~~~~~l~~~g 131 (173)
++...++...+..|...|
T Consensus 236 ~tGn~~tE~lv~~L~~~g 253 (596)
T PRK14042 236 GASHPPTEALVAALTDTP 253 (596)
T ss_pred CCCcHhHHHHHHHHHhcC
Confidence 345555666666665544
No 175
>TIGR00035 asp_race aspartate racemase.
Probab=64.15 E-value=37 Score=27.57 Aligned_cols=42 Identities=24% Similarity=0.137 Sum_probs=27.6
Q ss_pred ecCCcccccCCCCHHHHhhhh---cCCC-----CCHHHHHhCCccEEEec
Q 037554 68 ARADASFVEAPRNDNEANWVW---GHTL-----HTPEELKAMGFHLTVHP 109 (173)
Q Consensus 68 AGAD~ifv~g~~~~e~i~~i~---g~p~-----~~~~eL~~lGv~~v~~~ 109 (173)
+|||+|.+++-+....+.++. ..|. .+.+.+++.|.++|-+=
T Consensus 74 ~g~d~iviaCNTah~~~~~l~~~~~iPii~i~~~~~~~~~~~~~~~VgvL 123 (229)
T TIGR00035 74 AGADFIIMPCNTAHKFAEDIQKAIGIPLISMIEETAEAVKEDGVKKAGLL 123 (229)
T ss_pred cCCCEEEECCccHHHHHHHHHHhCCCCEechHHHHHHHHHHcCCCEEEEE
Confidence 899999998854433344552 2454 34677878888887553
No 176
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=64.11 E-value=27 Score=30.91 Aligned_cols=48 Identities=15% Similarity=0.159 Sum_probs=33.4
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~ 60 (173)
++.+.++.+.++...|+..|- .|.. +..++..|.+|=+..+..+++..
T Consensus 139 ~~~~~a~~~~~~~~gGvD~IK-dDe~-------l~~~~~~p~~eRv~~v~~av~~a 186 (364)
T cd08210 139 SAAELAELAYAFALGGIDIIK-DDHG-------LADQPFAPFEERVKACQEAVAEA 186 (364)
T ss_pred CHHHHHHHHHHHHhcCCCeee-cCcc-------ccCccCCCHHHHHHHHHHHHHHH
Confidence 678999999999999999983 2322 12345667777766666666544
No 177
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=63.65 E-value=87 Score=26.16 Aligned_cols=26 Identities=27% Similarity=0.303 Sum_probs=22.1
Q ss_pred CCCCChHHHHHHHHHHHHhCceEEEe
Q 037554 1 TGGGNALNVQRTVKDLVAAGAAGCFL 26 (173)
Q Consensus 1 tGyG~~~~v~rtv~~~~~aGvagi~i 26 (173)
.||-+.....+.++.+.++||.-|-|
T Consensus 18 aG~P~~~~~~~~~~~l~~~Gad~iEl 43 (256)
T TIGR00262 18 AGDPTLETSLEIIKTLIEAGADALEL 43 (256)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 37777788889999999999998766
No 178
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=63.45 E-value=10 Score=32.30 Aligned_cols=46 Identities=13% Similarity=0.079 Sum_probs=29.5
Q ss_pred HHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc
Q 037554 12 TVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60 (173)
Q Consensus 12 tv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~ 60 (173)
-+++..++|+..|+|-+.+.+. |...+-=.+++|.+++++.+++..
T Consensus 84 ~ie~A~~~g~~~v~i~~~~s~~---~~~~n~~~~~~e~l~~~~~~v~~a 129 (287)
T PRK05692 84 GLEAALAAGADEVAVFASASEA---FSQKNINCSIAESLERFEPVAEAA 129 (287)
T ss_pred HHHHHHHcCCCEEEEEEecCHH---HHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3566678899999999877642 221111246778777777666654
No 179
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=63.06 E-value=76 Score=29.26 Aligned_cols=143 Identities=14% Similarity=0.042 Sum_probs=81.5
Q ss_pred CCCC-hHH-HHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE------------
Q 037554 2 GGGN-ALN-VQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL------------ 67 (173)
Q Consensus 2 GyG~-~~~-v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I------------ 67 (173)
||-+ |.| +...|+...+.|+.=+-|=|.. -+++.+..-|++++++-....+.|
T Consensus 98 gy~~ypddvv~~fv~~a~~~Gidi~Rifd~l-------------nd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y 164 (468)
T PRK12581 98 GYRHYADDIVDKFISLSAQNGIDVFRIFDAL-------------NDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNY 164 (468)
T ss_pred CccCCcchHHHHHHHHHHHCCCCEEEEcccC-------------CCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHH
Confidence 4443 455 4456788889999999988854 244555555666665421111222
Q ss_pred ----------ecCCcccc---cCCCCHHHHhhh-----h--cCC---------C---CCHHHHHhCCccEEEechHHH--
Q 037554 68 ----------ARADASFV---EAPRNDNEANWV-----W--GHT---------L---HTPEELKAMGFHLTVHPLTAL-- 113 (173)
Q Consensus 68 ----------AGAD~ifv---~g~~~~e~i~~i-----~--g~p---------~---~~~~eL~~lGv~~v~~~~~~~-- 113 (173)
+|||.|.+ -|+-+++++.++ . +.| . -+.-.-.+.|+++|-.....+
T Consensus 165 ~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~~~~pi~~H~Hnt~GlA~An~laAieAGad~vD~ai~g~g~ 244 (468)
T PRK12581 165 YLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAMTNLPLIVHTHATSGISQMTYLAAVEAGADRIDTALSPFSE 244 (468)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHhccCCeEEEEeCCCCccHHHHHHHHHHcCCCEEEeeccccCC
Confidence 89999987 345678777666 1 112 1 233445688998876554443
Q ss_pred HHHHHHHHHHHHHHHHcCCcccccccCCCHHHHHHhcChhhHHHHHhcccc
Q 037554 114 YASARALVDVLKTLKESGTTRDHLEKMGTFEEFNQLVNLESWFEIEGRYSN 164 (173)
Q Consensus 114 ~aa~~a~~~~~~~l~~~g~~~~~~~~~~~~~e~~~l~g~~~~~~~~~~y~~ 164 (173)
++...++...+..|...|.... ...+.+.++-. .|.++-++|.+
T Consensus 245 gagN~~tE~lv~~L~~~g~~tg-----iDl~~L~~~a~--~~~~vr~~y~~ 288 (468)
T PRK12581 245 GTSQPATESMYLALKEAGYDIT-----LDETLLEQAAN--HLRQARQKYLA 288 (468)
T ss_pred CcCChhHHHHHHHHHhcCCCCC-----cCHHHHHHHHH--HHHHHHHHhcc
Confidence 5566667777776765543221 23333333221 14556666664
No 180
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=62.33 E-value=24 Score=29.83 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE
Q 037554 6 ALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL 67 (173)
Q Consensus 6 ~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I 67 (173)
|.++.+.+.+-.+|||+.|||==...+ .|++..+++.+.+=++++|+. .+|++|
T Consensus 25 peEia~~A~~c~~AGAa~vH~H~R~~~------~G~~s~d~~~~~e~~~~IR~~--~pd~iv 78 (272)
T PF05853_consen 25 PEEIAADAVACYEAGAAIVHIHARDDE------DGRPSLDPELYAEVVEAIRAA--CPDLIV 78 (272)
T ss_dssp HHHHHHHHHHHHHHTESEEEE-EE-TT------TS-EE--HHHHHHHHHHHHHH--STTSEE
T ss_pred HHHHHHHHHHHHHcCCcEEEeecCCCC------CCCcCCCHHHHHHHHHHHHHH--CCCeEE
Confidence 578899999999999999998421000 356778889998888888877 477777
No 181
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=62.04 E-value=83 Score=29.81 Aligned_cols=117 Identities=14% Similarity=0.034 Sum_probs=68.3
Q ss_pred CCCC-hHH-HHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCC----------C----CE
Q 037554 2 GGGN-ALN-VQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGD----------S----DF 65 (173)
Q Consensus 2 GyG~-~~~-v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~----------~----d~ 65 (173)
||.+ |.| +...|+...+.|+..|+|-|...+ ++.+..-|++|++.-.. + ++
T Consensus 90 g~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd-------------~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~ 156 (593)
T PRK14040 90 GYRHYADDVVERFVERAVKNGMDVFRVFDAMND-------------PRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQT 156 (593)
T ss_pred ccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCc-------------HHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHH
Confidence 4443 455 456788889999999999996531 23344444544443110 0 11
Q ss_pred EE--------ecCCcccc---cCCCCHHHHhhh-----h--cCC---------C---CCHHHHHhCCccEEEechHHH--
Q 037554 66 VL--------ARADASFV---EAPRNDNEANWV-----W--GHT---------L---HTPEELKAMGFHLTVHPLTAL-- 113 (173)
Q Consensus 66 ~I--------AGAD~ifv---~g~~~~e~i~~i-----~--g~p---------~---~~~~eL~~lGv~~v~~~~~~~-- 113 (173)
++ +|||.|.+ -|.-+++++.++ . +.| . -+.-.-.+.|++.|-.....+
T Consensus 157 ~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~~pi~~H~Hnt~GlA~An~laAieAGa~~vD~ai~glG~ 236 (593)
T PRK14040 157 WVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVDVPLHLHCHATTGLSTATLLKAIEAGIDGVDTAISSMSM 236 (593)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCchHHHHHHHHHHcCCCEEEeccccccc
Confidence 11 79998886 345678777766 1 122 1 123345678998887665444
Q ss_pred HHHHHHHHHHHHHHHHcC
Q 037554 114 YASARALVDVLKTLKESG 131 (173)
Q Consensus 114 ~aa~~a~~~~~~~l~~~g 131 (173)
++...++...+..|...|
T Consensus 237 ~~Gn~~le~vv~~L~~~~ 254 (593)
T PRK14040 237 TYGHSATETLVATLEGTE 254 (593)
T ss_pred cccchhHHHHHHHHHhcC
Confidence 455566666666665444
No 182
>PRK06801 hypothetical protein; Provisional
Probab=62.02 E-value=1e+02 Score=26.40 Aligned_cols=32 Identities=13% Similarity=0.012 Sum_probs=25.3
Q ss_pred CHHHHHhCCccEEEechHHHHHHHHHHHHHHH
Q 037554 94 TPEELKAMGFHLTVHPLTALYASARALVDVLK 125 (173)
Q Consensus 94 ~~~eL~~lGv~~v~~~~~~~~aa~~a~~~~~~ 125 (173)
.+.++.++|++-|-+.+.+..+.+.++++.+.
T Consensus 218 ~~~~~i~~Gi~KINv~T~~~~a~~~~~~~~~~ 249 (286)
T PRK06801 218 DFRRAIELGIHKINFYTGMSQAALAAVEQRMT 249 (286)
T ss_pred HHHHHHHcCCcEEEehhHHHHHHHHHHHHHHH
Confidence 34666789999999998888888888877664
No 183
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=61.21 E-value=33 Score=30.93 Aligned_cols=46 Identities=22% Similarity=0.209 Sum_probs=38.2
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcC
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIG 61 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~ 61 (173)
++..+.+.++.+..+|+.=|+|=|.++ ...+.++.+.|++.+..-.
T Consensus 144 ~~~~l~~~~~~~~~~ga~~i~l~DTvG-----------~~~P~~~~~~i~~l~~~v~ 189 (409)
T COG0119 144 DPEFLAEVVKAAIEAGADRINLPDTVG-----------VATPNEVADIIEALKANVP 189 (409)
T ss_pred CHHHHHHHHHHHHHcCCcEEEECCCcC-----------ccCHHHHHHHHHHHHHhCC
Confidence 567888999999999999999999985 4567888889998887653
No 184
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=61.13 E-value=12 Score=30.11 Aligned_cols=114 Identities=25% Similarity=0.234 Sum_probs=65.0
Q ss_pred HHHHHHHHhCceEE--EeccCCCCccCCCCCCCc--ccCHHHHHHHHHHHHHhcCCCCEEE------------------e
Q 037554 11 RTVKDLVAAGAAGC--FLEDQSWPKKCGHMHGKQ--IIPAEEHAAKIASARDAIGDSDFVL------------------A 68 (173)
Q Consensus 11 rtv~~~~~aGvagi--~iEDq~~pKrcg~~~g~~--l~~~ee~~~kI~Aa~~a~~~~d~~I------------------A 68 (173)
+.++.....|+..| -+||.+.|. .|. -....+++..+++++.. ...++| +
T Consensus 12 ~~~~~a~~~g~D~vilDlEd~~~~~------~K~~ar~~~~~~~~~~~~~~~~--~~~~~VRvn~~~~~~~~~Dl~~l~~ 83 (221)
T PF03328_consen 12 KMLEKAAASGADFVILDLEDGVPPD------EKDEAREDLAEALRSIRAARAA--GSEIIVRVNSLDSPHIERDLEALDA 83 (221)
T ss_dssp HHHHHHHTTCSSEEEEESSTTSSGG------GHHHHHHHHHHHHHHHHHHTTS--SSEEEEE-SSTTCHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCEEEEeCcccCCcc------cchhhHHHHHHHHHhhcccccc--cccceecCCCCCcchhhhhhhhccc
Confidence 45566667777654 568877442 111 12333444444332211 234555 7
Q ss_pred cCCcccccCCCCHHHHhhhh---c-CC---------------------CCCHHHHHhC-CccEEEechHHHHHH------
Q 037554 69 RADASFVEAPRNDNEANWVW---G-HT---------------------LHTPEELKAM-GFHLTVHPLTALYAS------ 116 (173)
Q Consensus 69 GAD~ifv~g~~~~e~i~~i~---g-~p---------------------~~~~~eL~~l-Gv~~v~~~~~~~~aa------ 116 (173)
|+|+|++|-+.+.++++++. . .| ...++++... |+..+.+|+.=+.+.
T Consensus 84 g~~gI~lP~ves~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~a~~~v~~l~~G~~Dls~~lG~~~~ 163 (221)
T PF03328_consen 84 GADGIVLPKVESAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIAAVPGVDGLFFGPADLSASLGIPGQ 163 (221)
T ss_dssp TSSEEEETT--SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HHHHHHHTTTTTS
T ss_pred CCCeeeccccCcHHHHHHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhcccCCeeEEEeCcHHHHhhhccCCC
Confidence 99999999999999999881 0 11 1356666665 788999987665443
Q ss_pred ------HHHHHHHHHHHHHcCC
Q 037554 117 ------ARALVDVLKTLKESGT 132 (173)
Q Consensus 117 ------~~a~~~~~~~l~~~g~ 132 (173)
..++.+.+..-+..|.
T Consensus 164 ~~~~~~~~a~~~v~~aa~a~g~ 185 (221)
T PF03328_consen 164 PDHPEVLEARSKVVLAARAAGK 185 (221)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTE
T ss_pred CcchHHHHHHHHHHHHHHHcCC
Confidence 3445555666666664
No 185
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=61.01 E-value=38 Score=28.38 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhCceEEEecc
Q 037554 7 LNVQRTVKDLVAAGAAGCFLED 28 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iED 28 (173)
.++.+.++.++++||.+|.+-.
T Consensus 166 ~~~~~~a~~~~~~G~d~i~~~n 187 (296)
T cd04740 166 TDIVEIARAAEEAGADGLTLIN 187 (296)
T ss_pred hhHHHHHHHHHHcCCCEEEEEC
Confidence 3566788899999999998754
No 186
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=60.94 E-value=8.5 Score=33.04 Aligned_cols=106 Identities=14% Similarity=0.079 Sum_probs=59.4
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCC-CccCCCCCCCc-ccCHHHHHHHHHHHHHhcCCCCEEE---------------
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSW-PKKCGHMHGKQ-IIPAEEHAAKIASARDAIGDSDFVL--------------- 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~-pKrcg~~~g~~-l~~~ee~~~kI~Aa~~a~~~~d~~I--------------- 67 (173)
+|.++.+.++.+.+.|+.||+|-=... ||-..+..|.. |-+++...+=|++++++.. ..+-+
T Consensus 64 ~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~-~pvsvKiR~g~~~~~~~~~~ 142 (309)
T PF01207_consen 64 DPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVP-IPVSVKIRLGWDDSPEETIE 142 (309)
T ss_dssp -HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-S-SEEEEEEESECT--CHHHHH
T ss_pred cHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccc-cceEEecccccccchhHHHH
Confidence 688999999999999999999876642 22222223444 4477777778888887643 22333
Q ss_pred -------ecCCcccccCC---------CCHHHHhhhh---cCC------CCCHHHHHh---C-CccEEEechH
Q 037554 68 -------ARADASFVEAP---------RNDNEANWVW---GHT------LHTPEELKA---M-GFHLTVHPLT 111 (173)
Q Consensus 68 -------AGAD~ifv~g~---------~~~e~i~~i~---g~p------~~~~~eL~~---l-Gv~~v~~~~~ 111 (173)
+|+|.|.||+. .+-+.+.++- ..| ..|.++..+ . |+.-|.+|-.
T Consensus 143 ~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRg 215 (309)
T PF01207_consen 143 FARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVMIGRG 215 (309)
T ss_dssp HHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEEESHH
T ss_pred HHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEEEchh
Confidence 99999999983 2445566651 122 244444332 3 7888888733
No 187
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=60.86 E-value=50 Score=26.75 Aligned_cols=89 Identities=13% Similarity=0.123 Sum_probs=54.8
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE----------------e
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL----------------A 68 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I----------------A 68 (173)
++.++...++.+.+.|+--|.|-=++. ..-+.+++++ +.. ++++| |
T Consensus 18 ~~~~a~~~~~al~~gGi~~iEiT~~t~-------------~a~~~I~~l~---~~~--p~~~vGAGTV~~~e~a~~a~~a 79 (196)
T PF01081_consen 18 DPEDAVPIAEALIEGGIRAIEITLRTP-------------NALEAIEALR---KEF--PDLLVGAGTVLTAEQAEAAIAA 79 (196)
T ss_dssp SGGGHHHHHHHHHHTT--EEEEETTST-------------THHHHHHHHH---HHH--TTSEEEEES--SHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCc-------------cHHHHHHHHH---HHC--CCCeeEEEeccCHHHHHHHHHc
Confidence 467888999999999999988876541 1234444443 332 67888 9
Q ss_pred cCCcccccCCCCHHHHhhhh--c---CC-CCCHHH---HHhCCccEEEechHH
Q 037554 69 RADASFVEAPRNDNEANWVW--G---HT-LHTPEE---LKAMGFHLTVHPLTA 112 (173)
Q Consensus 69 GAD~ifv~g~~~~e~i~~i~--g---~p-~~~~~e---L~~lGv~~v~~~~~~ 112 (173)
||+.+.-|+. +++-++... + .| ..|+.| ..++|++.|-+-+..
T Consensus 80 GA~FivSP~~-~~~v~~~~~~~~i~~iPG~~TptEi~~A~~~G~~~vK~FPA~ 131 (196)
T PF01081_consen 80 GAQFIVSPGF-DPEVIEYAREYGIPYIPGVMTPTEIMQALEAGADIVKLFPAG 131 (196)
T ss_dssp T-SEEEESS---HHHHHHHHHHTSEEEEEESSHHHHHHHHHTT-SEEEETTTT
T ss_pred CCCEEECCCC-CHHHHHHHHHcCCcccCCcCCHHHHHHHHHCCCCEEEEecch
Confidence 9999998873 666665552 3 33 355544 578899988665433
No 188
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=60.78 E-value=56 Score=29.83 Aligned_cols=89 Identities=15% Similarity=0.086 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHH---HHHHHHHhcCCCCEEE---------ecCCcccc
Q 037554 8 NVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAA---KIASARDAIGDSDFVL---------ARADASFV 75 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~---kI~Aa~~a~~~~d~~I---------AGAD~ifv 75 (173)
...+.++++.++|+..|+|-|+.. |.+++.+ +++...+.. +..++| .|||+|=+
T Consensus 308 ~~~~~l~~~l~~Gv~~vqlR~k~~-------------~~~~~~~~a~~l~~~~~~~-~~~liind~~~lA~~~~adGvHl 373 (502)
T PLN02898 308 STVDAVRAAIEGGATIVQLREKEA-------------ETREFIEEAKACLAICRSY-GVPLLINDRVDVALACDADGVHL 373 (502)
T ss_pred hHHHHHHHHHHcCCCEEEEccCCC-------------CHHHHHHHHHHHHHHHHHh-CCEEEEcChHHHHHhcCCCEEEe
Confidence 355679999999999999998653 2334444 444343332 345677 79999876
Q ss_pred cCC-CCHHHHhhh---h---cCCCCCHHH---HHhCCccEEEech
Q 037554 76 EAP-RNDNEANWV---W---GHTLHTPEE---LKAMGFHLTVHPL 110 (173)
Q Consensus 76 ~g~-~~~e~i~~i---~---g~p~~~~~e---L~~lGv~~v~~~~ 110 (173)
..- .+..+.+++ . |....+.+| ..+.|++.|.+|+
T Consensus 374 ~~~d~~~~~~r~~~~~~~~iG~S~h~~~e~~~a~~~gadyi~~gp 418 (502)
T PLN02898 374 GQSDMPVRLARSLLGPGKIIGVSCKTPEQAEQAWKDGADYIGCGG 418 (502)
T ss_pred ChHhcCHHHHHHhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECC
Confidence 431 124555554 1 322344444 4467999998764
No 189
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=60.53 E-value=30 Score=29.10 Aligned_cols=87 Identities=11% Similarity=0.053 Sum_probs=54.4
Q ss_pred ecCCcccccCCC-----CHHHHhhh--h--c-------------CCCCCHHHHHhCCccEEEechHHHHHHHHHHHHHHH
Q 037554 68 ARADASFVEAPR-----NDNEANWV--W--G-------------HTLHTPEELKAMGFHLTVHPLTALYASARALVDVLK 125 (173)
Q Consensus 68 AGAD~ifv~g~~-----~~e~i~~i--~--g-------------~p~~~~~eL~~lGv~~v~~~~~~~~aa~~a~~~~~~ 125 (173)
+|+++|..-+++ |.+-++++ + + .|...+++|.++||.||...... ..|..++....+
T Consensus 85 lG~~GVV~G~lt~dg~iD~~~le~Li~aA~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTsGg~-~sa~eg~~~l~~ 163 (241)
T COG3142 85 LGVQGVVLGALTADGNIDMPRLEKLIEAAGGLGVTFHRAFDECPDPLEALEQLIELGVERILTSGGK-ASALEGLDLLKR 163 (241)
T ss_pred cCCCcEEEeeecCCCccCHHHHHHHHHHccCCceeeehhhhhcCCHHHHHHHHHHCCCcEEecCCCc-CchhhhHHHHHH
Confidence 888888765543 45556666 1 1 23457899999999999988776 677777766666
Q ss_pred HHHHc-CCcccccccCC---CHHHHHHhcChhhH
Q 037554 126 TLKES-GTTRDHLEKMG---TFEEFNQLVNLESW 155 (173)
Q Consensus 126 ~l~~~-g~~~~~~~~~~---~~~e~~~l~g~~~~ 155 (173)
-+... |...-+...-. +..++...+|..++
T Consensus 164 li~~a~gri~Im~GaGV~~~N~~~l~~~tg~~e~ 197 (241)
T COG3142 164 LIEQAKGRIIIMAGAGVRAENIAELVLLTGVTEV 197 (241)
T ss_pred HHHHhcCCEEEEeCCCCCHHHHHHHHHhcCchhh
Confidence 55544 33332332212 45555555666554
No 190
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=60.44 E-value=77 Score=26.64 Aligned_cols=83 Identities=22% Similarity=0.166 Sum_probs=50.8
Q ss_pred CCCCChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcc-----------cCHHHHHHHHHHHHHhcCCCCEEE--
Q 037554 1 TGGGNALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQI-----------IPAEEHAAKIASARDAIGDSDFVL-- 67 (173)
Q Consensus 1 tGyG~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l-----------~~~ee~~~kI~Aa~~a~~~~d~~I-- 67 (173)
.||.+.....+.++.+.+.||.-|-|- +|=.-.-..|+.+ ++.++..+-++..++-..+..+++
T Consensus 20 aG~P~~~~~~~~~~~l~~~Gad~iElG---iPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~ 96 (258)
T PRK13111 20 AGDPDLETSLEIIKALVEAGADIIELG---IPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMT 96 (258)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEC---CCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 478888888999999999999887652 1211111123211 233444445555442223445656
Q ss_pred -------------------ecCCcccccCCCCHHHHhhh
Q 037554 68 -------------------ARADASFVEAPRNDNEANWV 87 (173)
Q Consensus 68 -------------------AGAD~ifv~g~~~~e~i~~i 87 (173)
+|+|++.+|.+. .|+++.+
T Consensus 97 Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp-~ee~~~~ 134 (258)
T PRK13111 97 YYNPIFQYGVERFAADAAEAGVDGLIIPDLP-PEEAEEL 134 (258)
T ss_pred cccHHhhcCHHHHHHHHHHcCCcEEEECCCC-HHHHHHH
Confidence 999999999874 5666666
No 191
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=60.28 E-value=89 Score=27.17 Aligned_cols=67 Identities=10% Similarity=0.054 Sum_probs=38.7
Q ss_pred hHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCC-CcccCHHHHHHHHHHHHHhcC----CCCEEE-------------
Q 037554 6 ALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHG-KQIIPAEEHAAKIASARDAIG----DSDFVL------------- 67 (173)
Q Consensus 6 ~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g-~~l~~~ee~~~kI~Aa~~a~~----~~d~~I------------- 67 (173)
..+..+.++.+.. ++.+|.|.= .|.|..+ ...-..+...+-+++++++.. +..+++
T Consensus 156 ~~d~~~~~~~~~~-~ad~lelN~-----scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ 229 (344)
T PRK05286 156 VDDYLICLEKLYP-YADYFTVNI-----SSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDD 229 (344)
T ss_pred HHHHHHHHHHHHh-hCCEEEEEc-----cCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHH
Confidence 3455566666544 477776542 3555533 234455556666666666543 134555
Q ss_pred -------ecCCcccccCC
Q 037554 68 -------ARADASFVEAP 78 (173)
Q Consensus 68 -------AGAD~ifv~g~ 78 (173)
+|||+|.+.+.
T Consensus 230 ia~~l~~~Gadgi~~~nt 247 (344)
T PRK05286 230 IADLALEHGIDGVIATNT 247 (344)
T ss_pred HHHHHHHhCCcEEEEeCC
Confidence 89999988763
No 192
>PLN02334 ribulose-phosphate 3-epimerase
Probab=60.04 E-value=68 Score=25.96 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=18.9
Q ss_pred CCHHHHHhCCccEEEechHHHHH
Q 037554 93 HTPEELKAMGFHLTVHPLTALYA 115 (173)
Q Consensus 93 ~~~~eL~~lGv~~v~~~~~~~~a 115 (173)
-++.++.+.|++.+..+...+.+
T Consensus 186 e~i~~l~~aGad~vvvgsai~~~ 208 (229)
T PLN02334 186 STIDKAAEAGANVIVAGSAVFGA 208 (229)
T ss_pred HHHHHHHHcCCCEEEEChHHhCC
Confidence 36678999999999999887653
No 193
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=60.00 E-value=1.1e+02 Score=26.19 Aligned_cols=115 Identities=13% Similarity=0.039 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhCceEEEeccCCC---CccCC---CCCCCcccCHHHHHHHHHHHHHhcCCCCEEE--ec-CCcccccC
Q 037554 7 LNVQRTVKDLVAAGAAGCFLEDQSW---PKKCG---HMHGKQIIPAEEHAAKIASARDAIGDSDFVL--AR-ADASFVEA 77 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iEDq~~---pKrcg---~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I--AG-AD~ifv~g 77 (173)
.|+..|-+-.+.|-..|+.+|=..+ .+--+ +.....+.++++..+-++ +.+.|++= .| +-+++...
T Consensus 115 eNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~-----~TgvD~LAvaiGt~HG~y~~~ 189 (288)
T TIGR00167 115 ENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVK-----LTGVDSLAAAIGNVHGVYKGE 189 (288)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHh-----ccCCcEEeeccCccccccCCC
Confidence 7888888888888888888886542 11101 111122556776665553 33566553 34 55666544
Q ss_pred CC--CHHHHhhhh---cCC----------CCCHHHHHhCCccEEEechHHHHHHHHHHHHHHHH
Q 037554 78 PR--NDNEANWVW---GHT----------LHTPEELKAMGFHLTVHPLTALYASARALVDVLKT 126 (173)
Q Consensus 78 ~~--~~e~i~~i~---g~p----------~~~~~eL~~lGv~~v~~~~~~~~aa~~a~~~~~~~ 126 (173)
+. +.+-+++|. +.| .-.+.++-+.|++-|-+++.+..+.+.++++.+.+
T Consensus 190 p~~Ld~~~L~~I~~~v~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~~ 253 (288)
T TIGR00167 190 PKGLDFERLEEIQKYVNLPLVLHGGSGIPDEEIKKAISLGVVKVNIDTELQIAFAAAVRNYYAE 253 (288)
T ss_pred CCccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEcChHHHHHHHHHHHHHHHh
Confidence 43 667777772 123 23455666899999999999999999988887743
No 194
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=59.68 E-value=82 Score=26.58 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=22.6
Q ss_pred CCCCChHHHHHHHHHHHHhCceEEEe
Q 037554 1 TGGGNALNVQRTVKDLVAAGAAGCFL 26 (173)
Q Consensus 1 tGyG~~~~v~rtv~~~~~aGvagi~i 26 (173)
.||-+.....+.++.+.+.||.-|-|
T Consensus 23 aG~P~~~~~~~~~~~l~~~Gad~iEl 48 (263)
T CHL00200 23 AGDPDIVITKKALKILDKKGADIIEL 48 (263)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 37888888899999999999998876
No 195
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=59.53 E-value=57 Score=27.14 Aligned_cols=57 Identities=19% Similarity=0.262 Sum_probs=34.3
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCC-Cc-ccCHHHHHHHHHHHHHhcCCCCEEE
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHG-KQ-IIPAEEHAAKIASARDAIGDSDFVL 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g-~~-l~~~ee~~~kI~Aa~~a~~~~d~~I 67 (173)
++.+..+.++.++++|+.+|.|-=. |.+... +. +.+++...+-|++++++. +..+++
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~-----cP~~~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~v 167 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLS-----CPNVGGGRQLGQDPEAVANLLKAVKAAV-DIPLLV 167 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcC-----CCCCCCCcccccCHHHHHHHHHHHHHcc-CCCEEE
Confidence 4678889999999999998876432 444322 22 234555555666666543 333443
No 196
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=59.16 E-value=60 Score=27.52 Aligned_cols=57 Identities=21% Similarity=0.165 Sum_probs=34.6
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCC-----CCcc-cCHHHHHHHHHHHHHhcCCCCEEE
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMH-----GKQI-IPAEEHAAKIASARDAIGDSDFVL 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~-----g~~l-~~~ee~~~kI~Aa~~a~~~~d~~I 67 (173)
++....+.++.++++|+.+|.|-=. |.+.. |..+ .+++...+=+++++++. +..+++
T Consensus 111 ~~~~~~~~a~~~~~~gad~ielN~s-----CP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~-~~Pv~v 173 (299)
T cd02940 111 NKEDWTELAKLVEEAGADALELNFS-----CPHGMPERGMGAAVGQDPELVEEICRWVREAV-KIPVIA 173 (299)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECC-----CCCCCCCCCCchhhccCHHHHHHHHHHHHHhc-CCCeEE
Confidence 6778889999999999988877443 33321 2222 35555555556555543 334555
No 197
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=58.70 E-value=39 Score=26.60 Aligned_cols=43 Identities=23% Similarity=0.141 Sum_probs=27.3
Q ss_pred ecCCcccccCCCCHHHHhhh-----h-c--------CCCCCH---HHHHhCCccEEEech
Q 037554 68 ARADASFVEAPRNDNEANWV-----W-G--------HTLHTP---EELKAMGFHLTVHPL 110 (173)
Q Consensus 68 AGAD~ifv~g~~~~e~i~~i-----~-g--------~p~~~~---~eL~~lGv~~v~~~~ 110 (173)
+|||.|.+++..+...+.++ + | +|..+. ..+.++|++.|.+.+
T Consensus 75 ~Gad~i~vh~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 75 AGADIVTVLGVADDATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYIGVHT 134 (206)
T ss_pred cCCCEEEEeccCCHHHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEEEEcC
Confidence 89999999887654333333 1 3 222222 445788999998864
No 198
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=58.27 E-value=1.1e+02 Score=25.82 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhCceEEEec
Q 037554 8 NVQRTVKDLVAAGAAGCFLE 27 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~iE 27 (173)
+..+.+++..++|..||.|-
T Consensus 142 ~~~~aA~~a~~aGfDgveih 161 (327)
T cd02803 142 DFAAAARRAKEAGFDGVEIH 161 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEc
Confidence 44566678888999999884
No 199
>PLN02433 uroporphyrinogen decarboxylase
Probab=57.86 E-value=75 Score=27.46 Aligned_cols=32 Identities=19% Similarity=0.060 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHH
Q 037554 9 VQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHA 50 (173)
Q Consensus 9 v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~ 50 (173)
+.+-++.+.++||..+.|-|... .++|++++.
T Consensus 181 ~~~~~~~~ieaGa~~i~i~d~~~----------~~lsp~~f~ 212 (345)
T PLN02433 181 VIEYVDYQIDAGAQVVQIFDSWA----------GHLSPVDFE 212 (345)
T ss_pred HHHHHHHHHHcCCCEEEEecCcc----------ccCCHHHHH
Confidence 34555667779999999999642 267777665
No 200
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=57.63 E-value=52 Score=26.31 Aligned_cols=36 Identities=11% Similarity=-0.081 Sum_probs=24.8
Q ss_pred CCHHHHHhCCccEEEechHHHHHHHHHHHHHHHHHH
Q 037554 93 HTPEELKAMGFHLTVHPLTALYASARALVDVLKTLK 128 (173)
Q Consensus 93 ~~~~eL~~lGv~~v~~~~~~~~aa~~a~~~~~~~l~ 128 (173)
-++.++.++|..-|.++..+++..-.......++..
T Consensus 169 ~~v~~~l~~GadgV~vgS~l~~~~e~~~~~~~~~~~ 204 (236)
T cd04730 169 RGIAAALALGADGVQMGTRFLATEESGASPAYKQAL 204 (236)
T ss_pred HHHHHHHHcCCcEEEEchhhhcCcccCCCHHHHHHH
Confidence 456777789999999998887765554444444443
No 201
>PRK08999 hypothetical protein; Provisional
Probab=57.46 E-value=73 Score=26.78 Aligned_cols=93 Identities=17% Similarity=0.150 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE---------ecCCcccccCC
Q 037554 8 NVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL---------ARADASFVEAP 78 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I---------AGAD~ifv~g~ 78 (173)
+....+++..+.|+..|+|=|...+ -......+.+|+...+.. +.-|+| .|+|+|-+...
T Consensus 145 ~~~~~~~~~l~~g~~~vqlR~k~~~----------~~~~~~~~~~l~~~~~~~-~~~liind~~~la~~~~~~GvHl~~~ 213 (312)
T PRK08999 145 AFLARLERALAAGIRLIQLRAPQLP----------PAAYRALARAALGLCRRA-GAQLLLNGDPELAEDLGADGVHLTSA 213 (312)
T ss_pred HHHHHHHHHHHCCCcEEEEeCCCCC----------HHHHHHHHHHHHHHHHHh-CCEEEEECcHHHHHhcCCCEEEcChh
Confidence 3456677778999999999886432 112233444444444333 344666 89999987542
Q ss_pred C-CHHHHhhhh-----cCCCCCHHHH---HhCCccEEEechH
Q 037554 79 R-NDNEANWVW-----GHTLHTPEEL---KAMGFHLTVHPLT 111 (173)
Q Consensus 79 ~-~~e~i~~i~-----g~p~~~~~eL---~~lGv~~v~~~~~ 111 (173)
. +..+.+++. |....+.+++ .++|++.+.+++.
T Consensus 214 d~~~~~~r~~~~~~~ig~S~h~~~~~~~a~~~~~dyi~~gpv 255 (312)
T PRK08999 214 QLAALAARPLPAGRWVAASCHDAEELARAQRLGVDFAVLSPV 255 (312)
T ss_pred hcChHhhccCCCCCEEEEecCCHHHHHHHHhcCCCEEEECCC
Confidence 1 233344431 3223455444 4568999998864
No 202
>PRK15452 putative protease; Provisional
Probab=57.36 E-value=55 Score=29.78 Aligned_cols=104 Identities=13% Similarity=0.124 Sum_probs=58.3
Q ss_pred HHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE-----------------------
Q 037554 11 RTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL----------------------- 67 (173)
Q Consensus 11 rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I----------------------- 67 (173)
..++..+++||-+|-+.=+.+.-|. .....+.+++.+-++-|.+. +..+++
T Consensus 14 e~l~aAi~~GADaVY~G~~~~~~R~----~~~~f~~edl~eav~~ah~~--g~kvyvt~n~i~~e~el~~~~~~l~~l~~ 87 (443)
T PRK15452 14 KNMRYAFAYGADAVYAGQPRYSLRV----RNNEFNHENLALGINEAHAL--GKKFYVVVNIAPHNAKLKTFIRDLEPVIA 87 (443)
T ss_pred HHHHHHHHCCCCEEEECCCccchhh----hccCCCHHHHHHHHHHHHHc--CCEEEEEecCcCCHHHHHHHHHHHHHHHh
Confidence 4566778899999998554443221 11234556666555544432 334444
Q ss_pred ecCCcccccCCCCHHHHhhhh------c-CC-----CCCHHHHHhCCccEEEechHHHHHHHHHH
Q 037554 68 ARADASFVEAPRNDNEANWVW------G-HT-----LHTPEELKAMGFHLTVHPLTALYASARAL 120 (173)
Q Consensus 68 AGAD~ifv~g~~~~e~i~~i~------g-~p-----~~~~~eL~~lGv~~v~~~~~~~~aa~~a~ 120 (173)
+|.|+|.|-.+-....+++.. + +. ..+++-+.++|++||+.+.-+-..-++.|
T Consensus 88 ~gvDgvIV~d~G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrELsl~EI~~i 152 (443)
T PRK15452 88 MKPDALIMSDPGLIMMVREHFPEMPIHLSVQANAVNWATVKFWQQMGLTRVILSRELSLEEIEEI 152 (443)
T ss_pred CCCCEEEEcCHHHHHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcCCHHHHHHH
Confidence 799998874433333333320 1 11 13556778888888888766543433333
No 203
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=57.09 E-value=1.4e+02 Score=28.11 Aligned_cols=144 Identities=17% Similarity=0.129 Sum_probs=77.3
Q ss_pred CCCC-hHH-HHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCC--------------CE
Q 037554 2 GGGN-ALN-VQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDS--------------DF 65 (173)
Q Consensus 2 GyG~-~~~-v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~--------------d~ 65 (173)
||-+ |.+ +...+++..++|+.-|+|=|.... ...+..-|+.|+++-... ++
T Consensus 84 G~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd-------------~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~ 150 (582)
T TIGR01108 84 GYRHYADDVVERFVKKAVENGMDVFRIFDALND-------------PRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLET 150 (582)
T ss_pred ccccCchhhHHHHHHHHHHCCCCEEEEEEecCc-------------HHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHH
Confidence 4443 555 445678889999999999887642 123333334444331101 11
Q ss_pred EE--------ecCCcccc---cCCCCHHHHhhh-----h--cCC---------C---CCHHHHHhCCccEEEechHHH--
Q 037554 66 VL--------ARADASFV---EAPRNDNEANWV-----W--GHT---------L---HTPEELKAMGFHLTVHPLTAL-- 113 (173)
Q Consensus 66 ~I--------AGAD~ifv---~g~~~~e~i~~i-----~--g~p---------~---~~~~eL~~lGv~~v~~~~~~~-- 113 (173)
++ +|||.|.+ -|.-++.++.++ . +.| . -+.-.-.+.|++.|-.....+
T Consensus 151 ~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAveaGa~~vd~ai~GlG~ 230 (582)
T TIGR01108 151 YLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRFGLPVHLHSHATTGMAEMALLKAIEAGADGIDTAISSMSG 230 (582)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCEEEeccccccc
Confidence 11 78888876 345677777666 1 122 1 133345678988886665544
Q ss_pred HHHHHHHHHHHHHHHHcCCcccccccCCCHHHHHHhcChhhHHHHHhcccch
Q 037554 114 YASARALVDVLKTLKESGTTRDHLEKMGTFEEFNQLVNLESWFEIEGRYSNF 165 (173)
Q Consensus 114 ~aa~~a~~~~~~~l~~~g~~~~~~~~~~~~~e~~~l~g~~~~~~~~~~y~~~ 165 (173)
++...++...+..|...|.... .+.+.+.++ -..|.++-++|..+
T Consensus 231 ~tGn~~le~vv~~L~~~g~~tg-----id~~~L~~l--~~~~~~v~~~Y~~~ 275 (582)
T TIGR01108 231 GTSHPPTETMVAALRGTGYDTG-----LDIELLLEI--AAYFREVRKKYSQF 275 (582)
T ss_pred cccChhHHHHHHHHHhcCCCcc-----cCHHHHHHH--HHHHHHHHHHhhcC
Confidence 4555666666666654443211 234444443 22244455566443
No 204
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=56.86 E-value=25 Score=29.56 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhCceEEEecc
Q 037554 7 LNVQRTVKDLVAAGAAGCFLED 28 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iED 28 (173)
.++...++.++++|+.+|++-.
T Consensus 169 ~~~~~~a~~l~~~G~d~i~v~n 190 (300)
T TIGR01037 169 TDITEIAKAAEEAGADGLTLIN 190 (300)
T ss_pred hhHHHHHHHHHHcCCCEEEEEc
Confidence 4677888999999999999853
No 205
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=56.34 E-value=8.8 Score=31.54 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHhCce
Q 037554 6 ALNVQRTVKDLVAAGAA 22 (173)
Q Consensus 6 ~~~v~rtv~~~~~aGva 22 (173)
+..+.+|++.|.++|+.
T Consensus 91 ~~gl~~Tl~~L~~~gi~ 107 (250)
T PF09587_consen 91 EEGLLDTLEALDKAGIP 107 (250)
T ss_pred HHHHHHHHHHHHHCCCc
Confidence 45677899999998853
No 206
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=56.28 E-value=1.1e+02 Score=25.15 Aligned_cols=139 Identities=14% Similarity=0.049 Sum_probs=78.6
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE----------------e
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL----------------A 68 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I----------------A 68 (173)
++.+....++.+.+.|+--|-|-=.+. ...+..++|+.-.. ...|++.| +
T Consensus 25 ~~~~a~~~~~al~~gGi~~iEiT~~tp-------------~a~~~i~~l~~~~~-~~~p~~~vGaGTVl~~e~a~~a~~a 90 (222)
T PRK07114 25 DVEVAKKVIKACYDGGARVFEFTNRGD-------------FAHEVFAELVKYAA-KELPGMILGVGSIVDAATAALYIQL 90 (222)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCC-------------cHHHHHHHHHHHHH-hhCCCeEEeeEeCcCHHHHHHHHHc
Confidence 457788888999999999887755431 12334444432221 12467888 9
Q ss_pred cCCcccccCCCCHHHHhhhh--c---CC-CCCH---HHHHhCCccEEEechH-HH-HHHHHHHH----------------
Q 037554 69 RADASFVEAPRNDNEANWVW--G---HT-LHTP---EELKAMGFHLTVHPLT-AL-YASARALV---------------- 121 (173)
Q Consensus 69 GAD~ifv~g~~~~e~i~~i~--g---~p-~~~~---~eL~~lGv~~v~~~~~-~~-~aa~~a~~---------------- 121 (173)
||+-|.-|+. +++-++... + .| ..|+ .+..++|++.|-+-+. .+ -..+++++
T Consensus 91 GA~FiVsP~~-~~~v~~~~~~~~i~~iPG~~TpsEi~~A~~~Ga~~vKlFPA~~~G~~~ikal~~p~p~i~~~ptGGV~~ 169 (222)
T PRK07114 91 GANFIVTPLF-NPDIAKVCNRRKVPYSPGCGSLSEIGYAEELGCEIVKLFPGSVYGPGFVKAIKGPMPWTKIMPTGGVEP 169 (222)
T ss_pred CCCEEECCCC-CHHHHHHHHHcCCCEeCCCCCHHHHHHHHHCCCCEEEECcccccCHHHHHHHhccCCCCeEEeCCCCCc
Confidence 9998888874 666655552 3 33 2454 4456789888755432 21 22333333
Q ss_pred --HHHHHHHHcCCcccccc-cCCCHHHHHHhcChhhHHHHHhcc
Q 037554 122 --DVLKTLKESGTTRDHLE-KMGTFEEFNQLVNLESWFEIEGRY 162 (173)
Q Consensus 122 --~~~~~l~~~g~~~~~~~-~~~~~~e~~~l~g~~~~~~~~~~y 162 (173)
+.+.++++.|-...-.+ .+.+ .+++.-.+|.++.++.
T Consensus 170 ~~~n~~~yl~aGa~avg~Gs~L~~----~~~~~~~~~~~i~~~a 209 (222)
T PRK07114 170 TEENLKKWFGAGVTCVGMGSKLIP----KEALAAKDYAGIEQKV 209 (222)
T ss_pred chhcHHHHHhCCCEEEEEChhhcC----ccccccccHHHHHHHH
Confidence 57778888775433222 2222 1334445566665553
No 207
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=56.27 E-value=92 Score=27.80 Aligned_cols=91 Identities=21% Similarity=0.161 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE-----------------e
Q 037554 6 ALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL-----------------A 68 (173)
Q Consensus 6 ~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I-----------------A 68 (173)
.....+.++.+.+.|+.-|++. + +..+ .+....|++.++...++.++. +
T Consensus 15 ~~~~~~~~~~~~~~Gv~~ie~g---~----------p~~~-~~~~~~i~~l~~~~~~~~ii~D~kl~d~g~~~v~~a~~a 80 (430)
T PRK07028 15 LDRAVEIAKEAVAGGADWIEAG---T----------PLIK-SEGMNAIRTLRKNFPDHTIVADMKTMDTGAIEVEMAAKA 80 (430)
T ss_pred HHHHHHHHHHHHhcCCcEEEeC---C----------HHHH-HhhHHHHHHHHHHCCCCEEEEEeeeccchHHHHHHHHHc
Confidence 4455667777788999988651 1 2221 334566776665543332321 8
Q ss_pred cCCcccccCCCCHHHHhhh-----h-c--------CCCCC---HHHHHhCCccEEEech
Q 037554 69 RADASFVEAPRNDNEANWV-----W-G--------HTLHT---PEELKAMGFHLTVHPL 110 (173)
Q Consensus 69 GAD~ifv~g~~~~e~i~~i-----~-g--------~p~~~---~~eL~~lGv~~v~~~~ 110 (173)
|||+|.+++..+...+.++ . | +|..+ ..++.++|++.+.+++
T Consensus 81 GAdgV~v~g~~~~~~~~~~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~p 139 (430)
T PRK07028 81 GADIVCILGLADDSTIEDAVRAARKYGVRLMADLINVPDPVKRAVELEELGVDYINVHV 139 (430)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHHcCCEEEEEecCCCCHHHHHHHHHhcCCCEEEEEe
Confidence 9999998887554332222 1 2 22222 3455789999998775
No 208
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=56.19 E-value=68 Score=28.51 Aligned_cols=69 Identities=14% Similarity=0.008 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcc-cCHHHHHHHHHHHHHhcCCCCEEE----------------
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQI-IPAEEHAAKIASARDAIGDSDFVL---------------- 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l-~~~ee~~~kI~Aa~~a~~~~d~~I---------------- 67 (173)
++..+.+.++.++++|+.+|.|-=....+-.....|..+ ..++.+.+=++++++. .+..+++
T Consensus 111 ~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~-~~~Pv~vKl~p~~~~~~~~a~~~ 189 (420)
T PRK08318 111 NEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRG-SRLPVIVKLTPNITDIREPARAA 189 (420)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhc-cCCcEEEEcCCCcccHHHHHHHH
Confidence 467789999999999999998754332110000012222 3455555555555544 2344555
Q ss_pred --ecCCccc
Q 037554 68 --ARADASF 74 (173)
Q Consensus 68 --AGAD~if 74 (173)
+|||+|.
T Consensus 190 ~~~Gadgi~ 198 (420)
T PRK08318 190 KRGGADAVS 198 (420)
T ss_pred HHCCCCEEE
Confidence 8999887
No 209
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=56.12 E-value=1.3e+02 Score=25.79 Aligned_cols=31 Identities=3% Similarity=-0.221 Sum_probs=25.2
Q ss_pred HHHHHhCCccEEEechHHHHHHHHHHHHHHH
Q 037554 95 PEELKAMGFHLTVHPLTALYASARALVDVLK 125 (173)
Q Consensus 95 ~~eL~~lGv~~v~~~~~~~~aa~~a~~~~~~ 125 (173)
+....++|++-|-+++.+..+.+.++++.+.
T Consensus 215 ~~~ai~~Gi~KiNi~Tel~~a~~~~~~~~l~ 245 (283)
T PRK07998 215 LRSFVNYKVAKVNIASDLRKAFITTVGKAYV 245 (283)
T ss_pred HHHHHHcCCcEEEECHHHHHHHHHHHHHHHH
Confidence 4555679999999999998888888887764
No 210
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=55.96 E-value=45 Score=26.69 Aligned_cols=21 Identities=19% Similarity=0.086 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHhCceEEEe
Q 037554 6 ALNVQRTVKDLVAAGAAGCFL 26 (173)
Q Consensus 6 ~~~v~rtv~~~~~aGvagi~i 26 (173)
+..+.+.++.+.++|+.|+.+
T Consensus 22 ~~~~~~~a~a~~~~G~~~~~~ 42 (221)
T PRK01130 22 PEIMAAMALAAVQGGAVGIRA 42 (221)
T ss_pred HHHHHHHHHHHHHCCCeEEEc
Confidence 356889999999999999997
No 211
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=55.63 E-value=21 Score=32.99 Aligned_cols=38 Identities=21% Similarity=0.218 Sum_probs=31.3
Q ss_pred CcccCHHHHHHHHHHHHHhcCCCCEEE-----------------ecCCcccccCC
Q 037554 41 KQIIPAEEHAAKIASARDAIGDSDFVL-----------------ARADASFVEAP 78 (173)
Q Consensus 41 ~~l~~~ee~~~kI~Aa~~a~~~~d~~I-----------------AGAD~ifv~g~ 78 (173)
+.+.|+|+...+|...+++.....+.+ ||||.|.|.|-
T Consensus 282 HDiysieDLaqlI~dLk~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~ 336 (485)
T COG0069 282 HDIYSIEDLAQLIKDLKEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGA 336 (485)
T ss_pred ccccCHHHHHHHHHHHHhcCCCCeEEEEEecccchHHHHhhhhhccCCEEEEcCC
Confidence 578999999999999999865444444 89999999875
No 212
>COG2048 HdrB Heterodisulfide reductase, subunit B [Energy production and conversion]
Probab=55.57 E-value=18 Score=31.36 Aligned_cols=67 Identities=28% Similarity=0.279 Sum_probs=44.6
Q ss_pred CCCChHHHHHHHHHHHHhCceEEEeccCCCCccCC--CCCCCcccCHHHHHHHHHHHHHhcCCCCEEEecCCcccccCCC
Q 037554 2 GGGNALNVQRTVKDLVAAGAAGCFLEDQSWPKKCG--HMHGKQIIPAEEHAAKIASARDAIGDSDFVLARADASFVEAPR 79 (173)
Q Consensus 2 GyG~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg--~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~IAGAD~ifv~g~~ 79 (173)
|++|+.|-...=.-++..||-=+..+|. +-.|| |.....=.+.+-...|++-+++ +|||+|..+++.
T Consensus 164 ~~~~pE~P~~ldel~ealGA~~v~~~~~--~~cCG~~~~~~~~~~sl~~~~~kL~~~ke---------~gad~ivt~Cp~ 232 (293)
T COG2048 164 GFDNPENPQSLDELVEALGAEPVDYEDK--TQCCGAPHSSLNLSVSLKLAKRKLQSAKE---------AGADCIVTPCPL 232 (293)
T ss_pred ccCCccchHHHHHHHHHhCCCCCCcCCc--ccccCcchhcccHHHHHHHHHHHHHHHHh---------cCCCEEEecCcc
Confidence 4567766666656677889999999998 67888 5443222334444446665554 688888887763
No 213
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=55.53 E-value=52 Score=27.81 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhCceEEEeccC
Q 037554 8 NVQRTVKDLVAAGAAGCFLEDQ 29 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~iEDq 29 (173)
.+.+.++++.++|+.|+.|=|=
T Consensus 103 G~e~F~~~~~~aGvdGlIipDL 124 (259)
T PF00290_consen 103 GIERFFKEAKEAGVDGLIIPDL 124 (259)
T ss_dssp -HHHHHHHHHHHTEEEEEETTS
T ss_pred chHHHHHHHHHcCCCEEEEcCC
Confidence 3667889999999999999994
No 214
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=55.27 E-value=1.1e+02 Score=27.56 Aligned_cols=63 Identities=17% Similarity=0.176 Sum_probs=39.7
Q ss_pred ecCCcccccCC-----CCHHHHhhh-------h-c--C---C--------CCCHHHHHhCC-ccEEEec-------hHHH
Q 037554 68 ARADASFVEAP-----RNDNEANWV-------W-G--H---T--------LHTPEELKAMG-FHLTVHP-------LTAL 113 (173)
Q Consensus 68 AGAD~ifv~g~-----~~~e~i~~i-------~-g--~---p--------~~~~~eL~~lG-v~~v~~~-------~~~~ 113 (173)
+|||.+.++++ .+.+++.++ + + . | ..-.+-+..+| .+.+... +.-.
T Consensus 293 aGaD~~~~~~~~Gkf~~~~~~~~~~~~~~~~p~~~~~k~~~Pv~sgG~~~~~vp~~~~~~G~~Dvi~~aGGGi~gHP~G~ 372 (406)
T cd08207 293 AGVDHLHVNGLASKFWESDDSVIESARACLTPLGGPDDAAMPVFSSGQWGGQAPPTYRRLGSVDLLYLAGGGIMAHPDGP 372 (406)
T ss_pred cCCCccccCCCcCCcCCCcHHHHHHHHHHhCchhccCCCeeEeccCCCCHhHHHHHHHHhCCCceEEecCCceecCCCCc
Confidence 99999998775 244555554 1 1 1 1 12245667888 5766652 3334
Q ss_pred HHHHHHHHHHHHHHHHc
Q 037554 114 YASARALVDVLKTLKES 130 (173)
Q Consensus 114 ~aa~~a~~~~~~~l~~~ 130 (173)
.+-.++++++.+..++.
T Consensus 373 ~aGa~A~rqA~ea~~~G 389 (406)
T cd08207 373 AAGVRSLRQAWEAAVAG 389 (406)
T ss_pred hhHHHHHHHHHHHHHcC
Confidence 67788899988887644
No 215
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=54.78 E-value=93 Score=28.51 Aligned_cols=69 Identities=9% Similarity=0.086 Sum_probs=39.1
Q ss_pred ecCCcccccCC--C-----CHHHHhhh--h-c---CCCCCHHHHHhCCccEEEechHHHHHHHHHHHHHHHHHHHcCCcc
Q 037554 68 ARADASFVEAP--R-----NDNEANWV--W-G---HTLHTPEELKAMGFHLTVHPLTALYASARALVDVLKTLKESGTTR 134 (173)
Q Consensus 68 AGAD~ifv~g~--~-----~~e~i~~i--~-g---~p~~~~~eL~~lGv~~v~~~~~~~~aa~~a~~~~~~~l~~~g~~~ 134 (173)
.|||.|.+-.. . ..+..++. . + +-.-+..|+.++|++.-.+--..++++-. .+.++-+++.++.+
T Consensus 245 LGAdgV~~GT~flat~Esgas~~~K~~L~~a~~~DT~~ap~~dmfe~G~~~qvlkrg~~f~~ra--~kl~~ly~~~~s~~ 322 (444)
T TIGR02814 245 LGADFIVTGSVNQCTVEAGTSDNVKKLLAKADVQDTAYAPAGDMFELGVKLQVLKRGTLFPARA--NKLYELYRRYDSLE 322 (444)
T ss_pred cCCcEEEeccHHHhCccccCCHHHHHHHHhCCCcCeEEecCccccccCceeeeeccccCcHHHH--HHHHHHHHhCCChh
Confidence 89999887332 0 12223332 1 1 22445678999999988877666555442 23444445566655
Q ss_pred cccc
Q 037554 135 DHLE 138 (173)
Q Consensus 135 ~~~~ 138 (173)
.++.
T Consensus 323 ~i~~ 326 (444)
T TIGR02814 323 ALPA 326 (444)
T ss_pred hCCH
Confidence 4443
No 216
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=54.38 E-value=91 Score=29.48 Aligned_cols=117 Identities=14% Similarity=0.040 Sum_probs=65.3
Q ss_pred CCCC-hHH-HHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCC--------------CE
Q 037554 2 GGGN-ALN-VQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDS--------------DF 65 (173)
Q Consensus 2 GyG~-~~~-v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~--------------d~ 65 (173)
||.+ |.| +...|++..++|+.-|+|-|...+ ...+..-|++++++-... ++
T Consensus 89 gy~~ypd~vv~~~v~~A~~~Gvd~irif~~lnd-------------~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~ 155 (592)
T PRK09282 89 GYRHYPDDVVEKFVEKAAENGIDIFRIFDALND-------------VRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEK 155 (592)
T ss_pred ccccccchhhHHHHHHHHHCCCCEEEEEEecCh-------------HHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHH
Confidence 4553 444 446778888899999999987642 122333333333321000 11
Q ss_pred EE--------ecCCcccc---cCCCCHHHHhhh-----h--cCC---------C---CCHHHHHhCCccEEEechHHH--
Q 037554 66 VL--------ARADASFV---EAPRNDNEANWV-----W--GHT---------L---HTPEELKAMGFHLTVHPLTAL-- 113 (173)
Q Consensus 66 ~I--------AGAD~ifv---~g~~~~e~i~~i-----~--g~p---------~---~~~~eL~~lGv~~v~~~~~~~-- 113 (173)
++ +|||.|.+ -|.-+++++.++ . +.| . -+.-.--+.|+++|-.....+
T Consensus 156 ~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~~pi~~H~Hnt~Gla~An~laAv~aGad~vD~ai~g~g~ 235 (592)
T PRK09282 156 YVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEVDLPVQLHSHCTSGLAPMTYLKAVEAGVDIIDTAISPLAF 235 (592)
T ss_pred HHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCCCeEEEEEcCCCCcHHHHHHHHHHhCCCEEEeeccccCC
Confidence 11 78888886 345677777766 1 122 1 233455678988876554443
Q ss_pred HHHHHHHHHHHHHHHHcC
Q 037554 114 YASARALVDVLKTLKESG 131 (173)
Q Consensus 114 ~aa~~a~~~~~~~l~~~g 131 (173)
++...++...+..|...|
T Consensus 236 ~agn~~~e~vv~~L~~~g 253 (592)
T PRK09282 236 GTSQPPTESMVAALKGTP 253 (592)
T ss_pred CcCCHhHHHHHHHHHhCC
Confidence 445555666666665444
No 217
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=54.15 E-value=1.2e+02 Score=24.71 Aligned_cols=112 Identities=14% Similarity=0.043 Sum_probs=70.4
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE----------------e
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL----------------A 68 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I----------------A 68 (173)
++.+....++.+.+.|+..|.|-=.+ | ...+-|+..++. -+++.| |
T Consensus 18 ~~e~a~~~~~al~~~Gi~~iEit~~t-~---------------~a~~~i~~l~~~--~~~~~vGAGTVl~~~~a~~a~~a 79 (204)
T TIGR01182 18 DVDDALPLAKALIEGGLRVLEVTLRT-P---------------VALDAIRLLRKE--VPDALIGAGTVLNPEQLRQAVDA 79 (204)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCC-c---------------cHHHHHHHHHHH--CCCCEEEEEeCCCHHHHHHHHHc
Confidence 46788899999999999988775433 1 233333433332 256777 9
Q ss_pred cCCcccccCCCCHHHHhhhh--c---CC-CCCH---HHHHhCCccEEEech-HHHH--HHHHHHH---------------
Q 037554 69 RADASFVEAPRNDNEANWVW--G---HT-LHTP---EELKAMGFHLTVHPL-TALY--ASARALV--------------- 121 (173)
Q Consensus 69 GAD~ifv~g~~~~e~i~~i~--g---~p-~~~~---~eL~~lGv~~v~~~~-~~~~--aa~~a~~--------------- 121 (173)
||+.|.-|+. +++.++... + .| ..|+ ....++|.+.|-+-+ ..+- .-+++++
T Consensus 80 GA~FivsP~~-~~~v~~~~~~~~i~~iPG~~TptEi~~A~~~Ga~~vKlFPA~~~GG~~yikal~~plp~i~~~ptGGV~ 158 (204)
T TIGR01182 80 GAQFIVSPGL-TPELAKHAQDHGIPIIPGVATPSEIMLALELGITALKLFPAEVSGGVKMLKALAGPFPQVRFCPTGGIN 158 (204)
T ss_pred CCCEEECCCC-CHHHHHHHHHcCCcEECCCCCHHHHHHHHHCCCCEEEECCchhcCCHHHHHHHhccCCCCcEEecCCCC
Confidence 9999988875 565555542 3 33 2455 445678998875443 3332 3445554
Q ss_pred -HHHHHHHHcCCccc
Q 037554 122 -DVLKTLKESGTTRD 135 (173)
Q Consensus 122 -~~~~~l~~~g~~~~ 135 (173)
+.+.++++.|....
T Consensus 159 ~~N~~~~l~aGa~~v 173 (204)
T TIGR01182 159 LANVRDYLAAPNVAC 173 (204)
T ss_pred HHHHHHHHhCCCEEE
Confidence 67788888886543
No 218
>KOG2794 consensus Delta-aminolevulinic acid dehydratase [Coenzyme transport and metabolism]
Probab=54.14 E-value=15 Score=31.83 Aligned_cols=20 Identities=15% Similarity=-0.002 Sum_probs=14.8
Q ss_pred ecCCcccc-cCCCCHHHHhhh
Q 037554 68 ARADASFV-EAPRNDNEANWV 87 (173)
Q Consensus 68 AGAD~ifv-~g~~~~e~i~~i 87 (173)
-|||+++| ||+...+.++.+
T Consensus 253 EGAD~lmVKPg~pyLDIir~~ 273 (340)
T KOG2794|consen 253 EGADILMVKPGLPYLDIIRLL 273 (340)
T ss_pred ccCceEEecCCCcHHHHHHHH
Confidence 69999988 666666666655
No 219
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=54.10 E-value=1.3e+02 Score=25.27 Aligned_cols=36 Identities=14% Similarity=0.102 Sum_probs=24.4
Q ss_pred CHHHHHh-CCccEEEechHHH-HHHHHHHHHHHHHHHH
Q 037554 94 TPEELKA-MGFHLTVHPLTAL-YASARALVDVLKTLKE 129 (173)
Q Consensus 94 ~~~eL~~-lGv~~v~~~~~~~-~aa~~a~~~~~~~l~~ 129 (173)
++..+.. -++.=+++|.+++ +|...+|.++.+++++
T Consensus 197 Nv~~i~~ip~i~EvnIGHsiia~Al~~Gl~~aV~~m~~ 234 (239)
T PRK05265 197 NVKPIAAIPGIEELNIGHAIIARALFVGLEEAVREMKR 234 (239)
T ss_pred hHHHHhhCCCCeEEccCHHHHHHHHHHhHHHHHHHHHH
Confidence 4444555 4578899998876 5667777777776654
No 220
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=53.82 E-value=21 Score=30.00 Aligned_cols=58 Identities=22% Similarity=0.330 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE--------------------
Q 037554 8 NVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL-------------------- 67 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I-------------------- 67 (173)
.+.+-++...+.|...|-|-|.+.+ +|.++-++-|+.+++. .|.+
T Consensus 85 ~~~~yl~~~k~lGf~~IEiSdGti~-----------l~~~~r~~~I~~~~~~----Gf~v~~EvG~K~~~~~~~~~~~~~ 149 (244)
T PF02679_consen 85 KFDEYLEECKELGFDAIEISDGTID-----------LPEEERLRLIRKAKEE----GFKVLSEVGKKDPESDFSLDPEEL 149 (244)
T ss_dssp -HHHHHHHHHHCT-SEEEE--SSS--------------HHHHHHHHHHHCCT----TSEEEEEES-SSHHHHTT--CCHH
T ss_pred hHHHHHHHHHHcCCCEEEecCCcee-----------CCHHHHHHHHHHHHHC----CCEEeecccCCCchhcccCCHHHH
Confidence 4556778888899999999998753 5677766666655432 2323
Q ss_pred ---------ecCCcccccCCCC
Q 037554 68 ---------ARADASFVEAPRN 80 (173)
Q Consensus 68 ---------AGAD~ifv~g~~~ 80 (173)
||||.|.+++-.+
T Consensus 150 i~~~~~dLeAGA~~ViiEarEs 171 (244)
T PF02679_consen 150 IEQAKRDLEAGADKVIIEARES 171 (244)
T ss_dssp HHHHHHHHHHTECEEEE--TTT
T ss_pred HHHHHHHHHCCCCEEEEeeecc
Confidence 9999999988633
No 221
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=53.57 E-value=1.4e+02 Score=25.55 Aligned_cols=115 Identities=15% Similarity=0.045 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHhCceEEEeccCCC---CccCCCCC-CCcccCHHHHHHHHHHHHHhcCCCCEEE--ec-CCccccc-CC
Q 037554 7 LNVQRTVKDLVAAGAAGCFLEDQSW---PKKCGHMH-GKQIIPAEEHAAKIASARDAIGDSDFVL--AR-ADASFVE-AP 78 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iEDq~~---pKrcg~~~-g~~l~~~ee~~~kI~Aa~~a~~~~d~~I--AG-AD~ifv~-g~ 78 (173)
.|+..|.+-.+-|=..|+.+|=..+ .+.-+... ...+.++++..+-++. .+.|++= .| +-+++.. .+
T Consensus 107 eNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~-----TgvD~LAvsiGt~HG~Y~~~~p 181 (276)
T cd00947 107 ENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEE-----TGVDALAVAIGTSHGAYKGGEP 181 (276)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHH-----HCCCEEEeccCccccccCCCCC
Confidence 6788777777777777888887653 11101000 0124567777655553 3456443 22 4455543 12
Q ss_pred -CCHHHHhhhh---cCC-------CC---CHHHHHhCCccEEEechHHHHHHHHHHHHHHHH
Q 037554 79 -RNDNEANWVW---GHT-------LH---TPEELKAMGFHLTVHPLTALYASARALVDVLKT 126 (173)
Q Consensus 79 -~~~e~i~~i~---g~p-------~~---~~~eL~~lGv~~v~~~~~~~~aa~~a~~~~~~~ 126 (173)
-+.+-++++. +.| .+ .+..+.+.|++-|-+.+.+..+.+.++++.+.+
T Consensus 182 ~L~~~~L~~i~~~~~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~~ 243 (276)
T cd00947 182 KLDFDRLKEIAERVNVPLVLHGGSGIPDEQIRKAIKLGVCKININTDLRLAFTAALREYLAE 243 (276)
T ss_pred ccCHHHHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHHHh
Confidence 3666677772 223 23 355667899999999999999999988887743
No 222
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=53.53 E-value=93 Score=27.09 Aligned_cols=119 Identities=11% Similarity=0.050 Sum_probs=57.7
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEEecCCcccccCCCCHHHH
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVLARADASFVEAPRNDNEA 84 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~IAGAD~ifv~g~~~~e~i 84 (173)
+..++...++.+.++|+.-|-+-=...-+..+...|.+..+..|.++.+. +...+..+.. .+.||..+.+++
T Consensus 22 ~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~---~~~~~~~~~~-----ll~pg~~~~~dl 93 (333)
T TIGR03217 22 TIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAA---DVVKRAKVAV-----LLLPGIGTVHDL 93 (333)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHH---HhCCCCEEEE-----EeccCccCHHHH
Confidence 45788899999999999999874111000001111334455555554444 3333333321 122333344444
Q ss_pred hhh-h-c-------CC-------CCCHHHHHhCCccEEEechHHHHHHHHHHHHHHHHHHHcC
Q 037554 85 NWV-W-G-------HT-------LHTPEELKAMGFHLTVHPLTALYASARALVDVLKTLKESG 131 (173)
Q Consensus 85 ~~i-~-g-------~p-------~~~~~eL~~lGv~~v~~~~~~~~aa~~a~~~~~~~l~~~g 131 (173)
+.. . | +. ....+..+++|+....+.....+.....+.+.++.+.+.|
T Consensus 94 ~~a~~~gvd~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~G 156 (333)
T TIGR03217 94 KAAYDAGARTVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYG 156 (333)
T ss_pred HHHHHCCCCEEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcC
Confidence 333 0 1 00 1234556666666554444444444445555555555555
No 223
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=53.04 E-value=38 Score=29.22 Aligned_cols=24 Identities=33% Similarity=0.338 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhCceEEEeccCC
Q 037554 7 LNVQRTVKDLVAAGAAGCFLEDQS 30 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iEDq~ 30 (173)
.++...++.++++||.||.+-...
T Consensus 175 ~~~~~~a~~l~~~Gadgi~~~nt~ 198 (325)
T cd04739 175 SALAHMAKQLDAAGADGLVLFNRF 198 (325)
T ss_pred cCHHHHHHHHHHcCCCeEEEEcCc
Confidence 367788899999999999997764
No 224
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=52.83 E-value=55 Score=29.13 Aligned_cols=44 Identities=25% Similarity=0.338 Sum_probs=25.0
Q ss_pred HHHHHHHHHhCceEEEeccCCCCccCCCCCCCcc---cCHHHHHHHHHHHHH
Q 037554 10 QRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQI---IPAEEHAAKIASARD 58 (173)
Q Consensus 10 ~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l---~~~ee~~~kI~Aa~~ 58 (173)
.+.++.+.++||.||.+=- ..+|.....+ +|..+.+..+.++++
T Consensus 199 ~e~A~~~~~aGaDgV~~G~-----gg~~~~~~~lg~~~p~~~ai~d~~~a~~ 245 (369)
T TIGR01304 199 YTTALHLMRTGAAGVIVGP-----GGANTTRLVLGIEVPMATAIADVAAARR 245 (369)
T ss_pred HHHHHHHHHcCCCEEEECC-----CCCcccccccCCCCCHHHHHHHHHHHHH
Confidence 3456677789999998211 1123322222 566666666766654
No 225
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=52.66 E-value=1.4e+02 Score=25.10 Aligned_cols=37 Identities=8% Similarity=0.109 Sum_probs=25.9
Q ss_pred CCHHHHHhC-C-ccEEEechHHH-HHHHHHHHHHHHHHHH
Q 037554 93 HTPEELKAM-G-FHLTVHPLTAL-YASARALVDVLKTLKE 129 (173)
Q Consensus 93 ~~~~eL~~l-G-v~~v~~~~~~~-~aa~~a~~~~~~~l~~ 129 (173)
-++..+... + +.=+++|.+++ +|...+|.++.+++++
T Consensus 194 ~Nv~~i~~~~~~i~EvnIGHsiia~Al~~Gl~~AV~~m~~ 233 (237)
T TIGR00559 194 HNVKYFAEILPYLDELNIGHAIIADAVYLGLEEAIREMRD 233 (237)
T ss_pred HhHHHHHhCCCCceEEecCHHHHHHHHHHhHHHHHHHHHH
Confidence 345555443 5 78999998876 6777788887777654
No 226
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=52.62 E-value=31 Score=30.69 Aligned_cols=19 Identities=21% Similarity=0.461 Sum_probs=14.6
Q ss_pred HHHHHHHHHhCceEEEecc
Q 037554 10 QRTVKDLVAAGAAGCFLED 28 (173)
Q Consensus 10 ~rtv~~~~~aGvagi~iED 28 (173)
.+.++.+.++||.||.+--
T Consensus 239 ~eda~~a~~~Gvd~I~VS~ 257 (367)
T TIGR02708 239 PEDADRALKAGASGIWVTN 257 (367)
T ss_pred HHHHHHHHHcCcCEEEECC
Confidence 3567788899999997654
No 227
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=52.60 E-value=1.1e+02 Score=26.29 Aligned_cols=32 Identities=13% Similarity=0.075 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHH
Q 037554 9 VQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHA 50 (173)
Q Consensus 9 v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~ 50 (173)
+.+.++.+.++||.+|.|-|... .++|++++-
T Consensus 188 ~~~~~~~~~eaGad~i~i~d~~~----------~~lsp~~f~ 219 (346)
T PRK00115 188 TIAYLNAQIEAGAQAVQIFDSWA----------GALSPADYR 219 (346)
T ss_pred HHHHHHHHHHcCCCEEEEecCcc----------ccCCHHHHH
Confidence 34556667789999999888632 267777665
No 228
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=52.29 E-value=38 Score=29.88 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=15.1
Q ss_pred HHHHHHHHhCceEEEeccC
Q 037554 11 RTVKDLVAAGAAGCFLEDQ 29 (173)
Q Consensus 11 rtv~~~~~aGvagi~iEDq 29 (173)
..++.+.++||.||.+-..
T Consensus 233 ~dA~~a~~~G~d~I~vsnh 251 (351)
T cd04737 233 EDADVAINAGADGIWVSNH 251 (351)
T ss_pred HHHHHHHHcCCCEEEEeCC
Confidence 4567888899999988763
No 229
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=52.22 E-value=91 Score=26.86 Aligned_cols=22 Identities=14% Similarity=0.086 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhCceEEEecc
Q 037554 7 LNVQRTVKDLVAAGAAGCFLED 28 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iED 28 (173)
....+.++.++++|+..|+|-=
T Consensus 148 ~~~~~~a~~l~~~Gvd~i~Vh~ 169 (312)
T PRK10550 148 ERKFEIADAVQQAGATELVVHG 169 (312)
T ss_pred hHHHHHHHHHHhcCCCEEEECC
Confidence 4467888999999999999853
No 230
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=52.08 E-value=1.3e+02 Score=24.55 Aligned_cols=93 Identities=14% Similarity=0.161 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhC-ceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE---------ecCCcccccC
Q 037554 8 NVQRTVKDLVAAG-AAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL---------ARADASFVEA 77 (173)
Q Consensus 8 ~v~rtv~~~~~aG-vagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I---------AGAD~ifv~g 77 (173)
+..+.++...+.| +..|+|=+...+ . -...+.+.+|+...+.. +..|+| .|||+|=++.
T Consensus 27 ~~~~~l~~al~~G~v~~vQlR~K~l~-------~---~~~~~~a~~l~~l~~~~-gv~liINd~~dlA~~~~adGVHLg~ 95 (221)
T PRK06512 27 ELAKLLRAALQGGDVASVILPQYGLD-------E---ATFQKQAEKLVPVIQEA-GAAALIAGDSRIAGRVKADGLHIEG 95 (221)
T ss_pred cHHHHHHHHHcCCCccEEEEeCCCCC-------H---HHHHHHHHHHHHHHHHh-CCEEEEeCHHHHHHHhCCCEEEECc
Confidence 5667888999999 799999887532 1 12234455666555443 355777 8999997753
Q ss_pred C-CCHHHHhhhh------c-CCCCCHH---HHHhCCccEEEechH
Q 037554 78 P-RNDNEANWVW------G-HTLHTPE---ELKAMGFHLTVHPLT 111 (173)
Q Consensus 78 ~-~~~e~i~~i~------g-~p~~~~~---eL~~lGv~~v~~~~~ 111 (173)
- .+..++++.- | +-..+.+ +..++|.+.+.+|+.
T Consensus 96 ~d~~~~~~r~~~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv 140 (221)
T PRK06512 96 NLAALAEAIEKHAPKMIVGFGNLRDRHGAMEIGELRPDYLFFGKL 140 (221)
T ss_pred cccCHHHHHHhcCCCCEEEecCCCCHHHHHHhhhcCCCEEEECCC
Confidence 1 2456666441 3 2223343 445789999999975
No 231
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=51.98 E-value=1.1e+02 Score=23.87 Aligned_cols=87 Identities=14% Similarity=0.091 Sum_probs=53.8
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE----------------e
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL----------------A 68 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I----------------A 68 (173)
++.++...++.+.++|+..|.+--... +..+.+.+|+ +.. +++.| +
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~~~-------------~~~~~i~~l~---~~~--~~~~iGag~v~~~~~~~~a~~~ 75 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLRTP-------------GALEAIRALR---KEF--PEALIGAGTVLTPEQADAAIAA 75 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCh-------------hHHHHHHHHH---HHC--CCCEEEEEeCCCHHHHHHHHHc
Confidence 467888999999999999999986531 1223444443 322 24433 9
Q ss_pred cCCcccccCCCCHHHHhhhh--c---CC-CCCHHH---HHhCCccEEEech
Q 037554 69 RADASFVEAPRNDNEANWVW--G---HT-LHTPEE---LKAMGFHLTVHPL 110 (173)
Q Consensus 69 GAD~ifv~g~~~~e~i~~i~--g---~p-~~~~~e---L~~lGv~~v~~~~ 110 (173)
|||.|..++ .+.+-+.... + .| ..|++| ..++|++.+-+-+
T Consensus 76 Ga~~i~~p~-~~~~~~~~~~~~~~~~i~gv~t~~e~~~A~~~Gad~i~~~p 125 (190)
T cd00452 76 GAQFIVSPG-LDPEVVKAANRAGIPLLPGVATPTEIMQALELGADIVKLFP 125 (190)
T ss_pred CCCEEEcCC-CCHHHHHHHHHcCCcEECCcCCHHHHHHHHHCCCCEEEEcC
Confidence 999998766 3444333331 2 22 235444 4568999997643
No 232
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=50.41 E-value=70 Score=30.05 Aligned_cols=45 Identities=11% Similarity=-0.073 Sum_probs=35.9
Q ss_pred ChHHHHHHHHHHHHhCce------EEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc
Q 037554 5 NALNVQRTVKDLVAAGAA------GCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGva------gi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~ 60 (173)
++.-+.+.++.+.++|+. -|+|=|.++ ...++++...|+..++..
T Consensus 182 d~~~l~~~~~~a~~ag~~~~~~~~~i~l~DTvG-----------~a~P~~~~~~i~~l~~~~ 232 (564)
T TIGR00970 182 ELEFAKEVCEAVKEVWAPTPERPIIFNLPATVE-----------MTTPNVYADSIEYFSTNI 232 (564)
T ss_pred CHHHHHHHHHHHHHhCCCccCCeeEEEeccccC-----------ccCHHHHHHHHHHHHHhc
Confidence 567888999999999985 689999885 456788888888877653
No 233
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=50.39 E-value=58 Score=26.81 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhCceEEEec
Q 037554 7 LNVQRTVKDLVAAGAAGCFLE 27 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iE 27 (173)
.+..+.++.++++|+.+||+.
T Consensus 152 ~~~~~la~~l~~aG~d~ihv~ 172 (233)
T cd02911 152 VDDEELARLIEKAGADIIHVD 172 (233)
T ss_pred cCHHHHHHHHHHhCCCEEEEC
Confidence 356678899999999999994
No 234
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).
Probab=50.39 E-value=1.3e+02 Score=25.63 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHH
Q 037554 9 VQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHA 50 (173)
Q Consensus 9 v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~ 50 (173)
+.+.++.+.++||.+|.|-|... .++|++.+-
T Consensus 179 ~~~~~~~~ieaGad~i~i~d~~~----------~~lsp~~f~ 210 (335)
T cd00717 179 TIEYLKAQIEAGAQAVQIFDSWA----------GALSPEDFE 210 (335)
T ss_pred HHHHHHHHHHhCCCEEEEeCccc----------ccCCHHHHH
Confidence 34556777789999999888632 267777665
No 235
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=50.25 E-value=60 Score=28.53 Aligned_cols=43 Identities=23% Similarity=0.203 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE
Q 037554 9 VQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL 67 (173)
Q Consensus 9 v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I 67 (173)
.++..-.+++|||.-|-=-|=- +=.+..||.+.+...-.++-|
T Consensus 149 Lak~Al~~A~AGADiVAPSdMM----------------DGrV~aIR~aLd~~g~~~v~I 191 (324)
T PF00490_consen 149 LAKQALSHAEAGADIVAPSDMM----------------DGRVGAIREALDEAGFSDVPI 191 (324)
T ss_dssp HHHHHHHHHHHT-SEEEE-S------------------TTHHHHHHHHHHHTTCTTSEE
T ss_pred HHHHHHHHHHhCCCeecccccc----------------CCHHHHHHHHHHhCCCCCccE
Confidence 4556667788998777544421 124555566666555467777
No 236
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=49.68 E-value=24 Score=25.93 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=24.1
Q ss_pred CCCC--C--hHHHHHHHHHHHHhCceEEEeccCC
Q 037554 1 TGGG--N--ALNVQRTVKDLVAAGAAGCFLEDQS 30 (173)
Q Consensus 1 tGyG--~--~~~v~rtv~~~~~aGvagi~iEDq~ 30 (173)
|||. + +....+.++++.++|++|+.|.-..
T Consensus 49 tg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~ 82 (123)
T PF07905_consen 49 TGYALRDDDEEELREFIRELAEKGAAGLGIKTGR 82 (123)
T ss_pred CCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccC
Confidence 4665 2 3458999999999999999997764
No 237
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=49.56 E-value=32 Score=28.95 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHh
Q 037554 7 LNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDA 59 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a 59 (173)
.+|-+-.++..+.|.-.|.|-|...| ++.++-|+-|+-++++
T Consensus 90 ~kvdeyl~e~~~lGfe~iEIS~G~i~-----------m~~eek~~lIe~a~d~ 131 (258)
T COG1809 90 DKVDEYLNEAKELGFEAIEISNGTIP-----------MSTEEKCRLIERAVDE 131 (258)
T ss_pred ccHHHHHHHHHHcCccEEEecCCeee-----------cchHHHHHHHHHHHhc
Confidence 35667778888899999999998765 6788888888888876
No 238
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=49.44 E-value=1.5e+02 Score=24.39 Aligned_cols=54 Identities=11% Similarity=0.067 Sum_probs=34.2
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCC-CCccCCCCCCCc-ccCHHHHHHHHHHHHHh
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQS-WPKKCGHMHGKQ-IIPAEEHAAKIASARDA 59 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~-~pKrcg~~~g~~-l~~~ee~~~kI~Aa~~a 59 (173)
++..+.+.++.+.+ ++.+|.|-=.. .+|-|.+..|.. +.+++...+-+++++++
T Consensus 83 ~~~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~ 138 (233)
T cd02911 83 SLEPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKET 138 (233)
T ss_pred CHHHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhc
Confidence 57778888888877 45788775443 233344444543 44677777777877764
No 239
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=49.21 E-value=40 Score=24.57 Aligned_cols=27 Identities=26% Similarity=0.209 Sum_probs=20.0
Q ss_pred CHHHHHhCCccEEEechHHHHHHHHHH
Q 037554 94 TPEELKAMGFHLTVHPLTALYASARAL 120 (173)
Q Consensus 94 ~~~eL~~lGv~~v~~~~~~~~aa~~a~ 120 (173)
..++|.++|+..++.+.+........+
T Consensus 94 ~~~~~~~~G~d~~~~~~~~~~~~~~~~ 120 (122)
T cd02071 94 DYELLKEMGVAEIFGPGTSIEEIIDKI 120 (122)
T ss_pred HHHHHHHCCCCEEECCCCCHHHHHHHH
Confidence 467788999999999887765554433
No 240
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=48.88 E-value=46 Score=26.42 Aligned_cols=90 Identities=13% Similarity=-0.007 Sum_probs=54.8
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc-CCCCEEE----------ecCCcc
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI-GDSDFVL----------ARADAS 73 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~-~~~d~~I----------AGAD~i 73 (173)
++.++.+.++.+.+.|+.-|.|-++.. +..+....++..+... .....++ +|||+|
T Consensus 22 ~~~~~~~~~~~~~~~Gv~~vqlr~k~~-------------~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv 88 (187)
T PRK07455 22 DLELGLQMAEAVAAGGMRLIEITWNSD-------------QPAELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFC 88 (187)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCC-------------CHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEE
Confidence 467888999999999999999988753 2344554444332211 1112222 999999
Q ss_pred cccCCCCHHHHhhh--hc---CC-CCCHHHH---HhCCccEEEe
Q 037554 74 FVEAPRNDNEANWV--WG---HT-LHTPEEL---KAMGFHLTVH 108 (173)
Q Consensus 74 fv~g~~~~e~i~~i--~g---~p-~~~~~eL---~~lGv~~v~~ 108 (173)
..|.. +.+.+..- .+ .| ..|+.|+ .++|++.+-+
T Consensus 89 ~~p~~-~~~~~~~~~~~~~~~i~G~~t~~e~~~A~~~Gadyv~~ 131 (187)
T PRK07455 89 FTPHV-DPELIEAAVAQDIPIIPGALTPTEIVTAWQAGASCVKV 131 (187)
T ss_pred ECCCC-CHHHHHHHHHcCCCEEcCcCCHHHHHHHHHCCCCEEEE
Confidence 88875 33333222 12 12 3455444 4689998865
No 241
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=48.76 E-value=1.7e+02 Score=24.96 Aligned_cols=79 Identities=22% Similarity=0.162 Sum_probs=49.1
Q ss_pred CCCCChHHHHHHHHHHHHhCceEEEec----cCCCC--c-cCCCCC-CCcccCHHHHHHHHHHHHHhcCCCCEEE-----
Q 037554 1 TGGGNALNVQRTVKDLVAAGAAGCFLE----DQSWP--K-KCGHMH-GKQIIPAEEHAAKIASARDAIGDSDFVL----- 67 (173)
Q Consensus 1 tGyG~~~~v~rtv~~~~~aGvagi~iE----Dq~~p--K-rcg~~~-g~~l~~~ee~~~kI~Aa~~a~~~~d~~I----- 67 (173)
.||.+.....+.++.|.++||..|-|- |-... . +-.|.. -+.=++.+...+-++.+++.-....+++
T Consensus 25 ~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~N 104 (265)
T COG0159 25 AGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYN 104 (265)
T ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEecc
Confidence 378888899999999999999988763 32210 0 000000 0123455666666666665433344555
Q ss_pred ----------------ecCCcccccCCC
Q 037554 68 ----------------ARADASFVEAPR 79 (173)
Q Consensus 68 ----------------AGAD~ifv~g~~ 79 (173)
+|.|++.+|-+.
T Consensus 105 pi~~~Gie~F~~~~~~~GvdGlivpDLP 132 (265)
T COG0159 105 PIFNYGIEKFLRRAKEAGVDGLLVPDLP 132 (265)
T ss_pred HHHHhhHHHHHHHHHHcCCCEEEeCCCC
Confidence 999999998863
No 242
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=48.72 E-value=91 Score=26.04 Aligned_cols=89 Identities=13% Similarity=0.074 Sum_probs=53.3
Q ss_pred HHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE-------------ecCCcccccCC
Q 037554 12 TVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL-------------ARADASFVEAP 78 (173)
Q Consensus 12 tv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I-------------AGAD~ifv~g~ 78 (173)
-+.....+||.+|++--... +.++..+-++.++.- +-+.++ +|||.|-+...
T Consensus 125 qi~~a~~~GAD~VlLi~~~l-------------~~~~l~~li~~a~~l--Gl~~lvevh~~~E~~~A~~~gadiIgin~r 189 (260)
T PRK00278 125 QIYEARAAGADAILLIVAAL-------------DDEQLKELLDYAHSL--GLDVLVEVHDEEELERALKLGAPLIGINNR 189 (260)
T ss_pred HHHHHHHcCCCEEEEEeccC-------------CHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHHcCCCEEEECCC
Confidence 36677889999999876542 223344444444332 344444 79998887651
Q ss_pred ------CCHHHHhhhh----c-CC------CC---CHHHHHhCCccEEEechHHHHH
Q 037554 79 ------RNDNEANWVW----G-HT------LH---TPEELKAMGFHLTVHPLTALYA 115 (173)
Q Consensus 79 ------~~~e~i~~i~----g-~p------~~---~~~eL~~lGv~~v~~~~~~~~a 115 (173)
.+.+...++- + .| .. ++.++.++|+.-|..|...+++
T Consensus 190 dl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~ 246 (260)
T PRK00278 190 NLKTFEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMRA 246 (260)
T ss_pred CcccccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCC
Confidence 1333333331 1 12 12 4567778999999999888764
No 243
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=48.65 E-value=1.5e+02 Score=25.37 Aligned_cols=32 Identities=19% Similarity=0.155 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHH
Q 037554 9 VQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHA 50 (173)
Q Consensus 9 v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~ 50 (173)
+.+.++.+.++||.++.|-|... .++|++++-
T Consensus 182 ~~~~~~~~~eaGad~i~i~d~~~----------~~lsp~~f~ 213 (338)
T TIGR01464 182 TIEYLVEQVKAGAQAVQIFDSWA----------GALSPEDFE 213 (338)
T ss_pred HHHHHHHHHHcCCCEEEEECCcc----------ccCCHHHHH
Confidence 34556777789999999988632 256766665
No 244
>PLN02591 tryptophan synthase
Probab=48.18 E-value=34 Score=28.70 Aligned_cols=147 Identities=18% Similarity=0.122 Sum_probs=77.2
Q ss_pred CCCCChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCc-----------ccCHHHHHHHHHHHHHhcCCCCEEE--
Q 037554 1 TGGGNALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQ-----------IIPAEEHAAKIASARDAIGDSDFVL-- 67 (173)
Q Consensus 1 tGyG~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~-----------l~~~ee~~~kI~Aa~~a~~~~d~~I-- 67 (173)
.||-+.....+.++.++++||.-|-|- +|=.-.-..|.. =++++...+-++..++. .+..+++
T Consensus 10 aG~P~~e~~~~~~~~l~~~Gad~iElG---iPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~-~~~p~ilm~ 85 (250)
T PLN02591 10 AGDPDLDTTAEALRLLDACGADVIELG---VPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQ-LSCPIVLFT 85 (250)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEC---CCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCCCEEEEe
Confidence 378888889999999999999988762 110000111211 12333344444444321 2334555
Q ss_pred -------------------ecCCcccccCCCCHHHHhhh-----h-c-------CCCCCHHH---HHhC--Ccc-EEE-e
Q 037554 68 -------------------ARADASFVEAPRNDNEANWV-----W-G-------HTLHTPEE---LKAM--GFH-LTV-H 108 (173)
Q Consensus 68 -------------------AGAD~ifv~g~~~~e~i~~i-----~-g-------~p~~~~~e---L~~l--Gv~-~v~-~ 108 (173)
+|+|++.+|-+. .||...+ . | +|..+.++ +.+. ||= .|+ .
T Consensus 86 Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP-~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~ 164 (250)
T PLN02591 86 YYNPILKRGIDKFMATIKEAGVHGLVVPDLP-LEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSST 164 (250)
T ss_pred cccHHHHhHHHHHHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCC
Confidence 999999999874 4665555 1 2 35454433 3333 322 223 4
Q ss_pred chHHHHHH-HHHHHHHHHHHHHcCCccccc-ccCCCHHHHHHhcCh
Q 037554 109 PLTALYAS-ARALVDVLKTLKESGTTRDHL-EKMGTFEEFNQLVNL 152 (173)
Q Consensus 109 ~~~~~~aa-~~a~~~~~~~l~~~g~~~~~~-~~~~~~~e~~~l~g~ 152 (173)
|.+..+.. -..+.+.++.+++.-+..-.. -+..+.+++..+...
T Consensus 165 GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~ 210 (250)
T PLN02591 165 GVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGW 210 (250)
T ss_pred CCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhc
Confidence 44443322 344566677777643221111 123356677666555
No 245
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=48.11 E-value=62 Score=27.15 Aligned_cols=39 Identities=23% Similarity=0.260 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHH
Q 037554 9 VQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARD 58 (173)
Q Consensus 9 v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~ 58 (173)
+.+-++...+.|...|-|-|.+.+ +|.++.++-|+.+.+
T Consensus 73 ~~~Yl~~~k~lGf~~IEiS~G~~~-----------i~~~~~~rlI~~~~~ 111 (237)
T TIGR03849 73 FDEYLNECDELGFEAVEISDGSME-----------ISLEERCNLIERAKD 111 (237)
T ss_pred HHHHHHHHHHcCCCEEEEcCCccC-----------CCHHHHHHHHHHHHh
Confidence 344556777889999999998653 566666666666553
No 246
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=48.08 E-value=45 Score=29.64 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=13.5
Q ss_pred HHHhCCccEEEechHHHHHH
Q 037554 97 ELKAMGFHLTVHPLTALYAS 116 (173)
Q Consensus 97 eL~~lGv~~v~~~~~~~~aa 116 (173)
..-.||.+.|.+|...+.+.
T Consensus 306 KALaLGA~aV~iGr~~l~~l 325 (361)
T cd04736 306 KALALGANAVLLGRATLYGL 325 (361)
T ss_pred HHHHcCCCEEEECHHHHHHH
Confidence 34467888888887666554
No 247
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=48.00 E-value=75 Score=26.97 Aligned_cols=32 Identities=31% Similarity=0.405 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHH
Q 037554 8 NVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEH 49 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~ 49 (173)
...+.++.+.++|+.+|.+-|+. ..++|++.+
T Consensus 183 ~~~~~~~~~~~~G~d~i~~~d~~----------~~~isp~~f 214 (343)
T PF01208_consen 183 FIIEYAKAQIEAGADGIFIFDSS----------GSLISPEMF 214 (343)
T ss_dssp HHHHHHHHHHHTT-SEEEEEETT----------GGGS-HHHH
T ss_pred HHHHHHHHHHHhCCCcccccccc----------cCCCCHHHH
Confidence 34566788899999999999932 358888876
No 248
>PF13011 LZ_Tnp_IS481: leucine-zipper of insertion element IS481
Probab=47.91 E-value=66 Score=22.74 Aligned_cols=47 Identities=26% Similarity=0.307 Sum_probs=32.9
Q ss_pred CC-ChHHHHHHHHHHHHhCceEEEeccCC-CCccCCCCCCCcccCHHHHHHHHHHHH
Q 037554 3 GG-NALNVQRTVKDLVAAGAAGCFLEDQS-WPKKCGHMHGKQIIPAEEHAAKIASAR 57 (173)
Q Consensus 3 yG-~~~~v~rtv~~~~~aGvagi~iEDq~-~pKrcg~~~g~~l~~~ee~~~kI~Aa~ 57 (173)
|| +...+.+-+.+|.+-|.+|+. |-. -|.+|.+.. | .+.+.+|.+.+
T Consensus 35 ~gVS~~Ta~kW~~Ryra~G~~GL~--DRSSRP~~sP~~t-----~-~~~~~~I~~lR 83 (85)
T PF13011_consen 35 FGVSRRTAYKWLARYRAEGEAGLQ--DRSSRPHRSPRRT-----P-PEVERRIIELR 83 (85)
T ss_pred hCCCHHHHHHHHHHHHHcCccccc--ccCCCCCCCCccC-----C-HHHHHHHHHHh
Confidence 66 667888889999999999985 754 488776642 3 24555555443
No 249
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=47.55 E-value=78 Score=27.27 Aligned_cols=23 Identities=9% Similarity=0.176 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhCceEEEeccC
Q 037554 7 LNVQRTVKDLVAAGAAGCFLEDQ 29 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iEDq 29 (173)
.++...++.++++||.||.+--.
T Consensus 216 ~~~~~ia~~l~~aGad~I~~~n~ 238 (327)
T cd04738 216 EELEDIADVALEHGVDGIIATNT 238 (327)
T ss_pred HHHHHHHHHHHHcCCcEEEEECC
Confidence 46788899999999999997653
No 250
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=47.07 E-value=90 Score=25.92 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHhCceEEEeccC
Q 037554 6 ALNVQRTVKDLVAAGAAGCFLEDQ 29 (173)
Q Consensus 6 ~~~v~rtv~~~~~aGvagi~iEDq 29 (173)
..++.+.++.++++||.+|++--.
T Consensus 175 ~~~~~~~a~~l~~~Gad~i~~~~~ 198 (289)
T cd02810 175 LEDIVELAKAAERAGADGLTAINT 198 (289)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcc
Confidence 457888999999999999998543
No 251
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=46.97 E-value=43 Score=28.29 Aligned_cols=29 Identities=24% Similarity=0.174 Sum_probs=16.0
Q ss_pred HHHHHHHhCceEEEeccCCCCccCCCCCCCcccCH
Q 037554 12 TVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPA 46 (173)
Q Consensus 12 tv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ 46 (173)
+.|+|+++|++.|--==. .-.+|+.|..+
T Consensus 136 ~akrL~d~GcaavMPlgs------PIGSg~Gi~n~ 164 (247)
T PF05690_consen 136 LAKRLEDAGCAAVMPLGS------PIGSGRGIQNP 164 (247)
T ss_dssp HHHHHHHTT-SEBEEBSS------STTT---SSTH
T ss_pred HHHHHHHCCCCEEEeccc------ccccCcCCCCH
Confidence 568889999988863222 23346677776
No 252
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=46.76 E-value=1.9e+02 Score=29.77 Aligned_cols=145 Identities=15% Similarity=0.076 Sum_probs=77.2
Q ss_pred CCCC-hHHH-HHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCC----------------
Q 037554 2 GGGN-ALNV-QRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDS---------------- 63 (173)
Q Consensus 2 GyG~-~~~v-~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~---------------- 63 (173)
||-+ |.|| ...|+...+.|+.=+-|=|.. -+++.|..-|++++++-.-.
T Consensus 618 gy~~ypd~vv~~f~~~~~~~GidifrifD~l-------------N~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~ 684 (1143)
T TIGR01235 618 GYTNYPDNVVKYFVKQAAQGGIDIFRVFDSL-------------NWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARP 684 (1143)
T ss_pred CccCCCHHHHHHHHHHHHHcCCCEEEECccC-------------cCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCC
Confidence 5664 5564 466788889999888888864 23334444444444331100
Q ss_pred ----CEEE--------ecCCcccc---cCCCCHHHHhhh-----h--cCC---------C---CCHHHHHhCCccEEEec
Q 037554 64 ----DFVL--------ARADASFV---EAPRNDNEANWV-----W--GHT---------L---HTPEELKAMGFHLTVHP 109 (173)
Q Consensus 64 ----d~~I--------AGAD~ifv---~g~~~~e~i~~i-----~--g~p---------~---~~~~eL~~lGv~~v~~~ 109 (173)
++++ +|||.|.+ -|+-++..+..+ . +.| . .+.-.-.+.|+++|-..
T Consensus 685 ~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~~~pi~~H~Hdt~Gla~an~laA~eaGad~vD~a 764 (1143)
T TIGR01235 685 KYDLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKTDLPIHFHTHDTSGIAVASMLAAVEAGVDVVDVA 764 (1143)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhcCCeEEEEECCCCCcHHHHHHHHHHhCCCEEEec
Confidence 0011 78888876 345577776666 1 122 1 23334568999999887
Q ss_pred hHHHH--HHHHHHHHHHHHHHHcCCcccccccCCCHHHHHHhcChhhHHHHHhcccchh
Q 037554 110 LTALY--ASARALVDVLKTLKESGTTRDHLEKMGTFEEFNQLVNLESWFEIEGRYSNFK 166 (173)
Q Consensus 110 ~~~~~--aa~~a~~~~~~~l~~~g~~~~~~~~~~~~~e~~~l~g~~~~~~~~~~y~~~~ 166 (173)
...+. +...++...+..|...|.. .. .+++.+.++-. .|.++...|.++.
T Consensus 765 i~gl~G~ts~p~~e~~v~~L~~~~~~----tg-idl~~l~~is~--~~~~vr~~y~~~~ 816 (1143)
T TIGR01235 765 VDSMSGLTSQPSLGAIVAALEGSERD----PG-LNVAWIRELSA--YWEAVRNLYAAFE 816 (1143)
T ss_pred chhhcCCCCCHhHHHHHHHHHhCCCC----CC-cCHHHHHHHHH--HHHHHHHHhhcCC
Confidence 76652 1222455555556544422 11 33444433222 2444666665553
No 253
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=46.70 E-value=27 Score=19.86 Aligned_cols=19 Identities=16% Similarity=0.351 Sum_probs=14.3
Q ss_pred HHHHHHHHHhCceEEEecc
Q 037554 10 QRTVKDLVAAGAAGCFLED 28 (173)
Q Consensus 10 ~rtv~~~~~aGvagi~iED 28 (173)
..+.+.+.++||.||+=.+
T Consensus 10 ~~~~~~~l~~GVDgI~Td~ 28 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMTDY 28 (30)
T ss_dssp HHHHHHHHHHT-SEEEES-
T ss_pred HHHHHHHHHcCCCEeeCCC
Confidence 5678999999999998543
No 254
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=46.39 E-value=69 Score=26.36 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=22.8
Q ss_pred ChHHHHHHHHHHHHhCceEEEe--ccCCC
Q 037554 5 NALNVQRTVKDLVAAGAAGCFL--EDQSW 31 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~i--EDq~~ 31 (173)
+..+..+.+++++++|+.=+|| .|..|
T Consensus 14 d~~~l~~~i~~l~~~g~d~lHiDimDG~F 42 (223)
T PRK08745 14 DFARLGEEVDNVLKAGADWVHFDVMDNHY 42 (223)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCcc
Confidence 5689999999999999999986 47654
No 255
>PRK08005 epimerase; Validated
Probab=46.38 E-value=71 Score=26.12 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=22.7
Q ss_pred ChHHHHHHHHHHHHhCceEEEec--cCCC
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLE--DQSW 31 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iE--Dq~~ 31 (173)
+..+..+.+++++++|+.-+|+. |..|
T Consensus 11 d~~~l~~el~~l~~~g~d~lHiDvMDG~F 39 (210)
T PRK08005 11 DPLRYAEALTALHDAPLGSLHLDIEDTSF 39 (210)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeccCCCc
Confidence 56899999999999999999874 6544
No 256
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=45.91 E-value=87 Score=28.80 Aligned_cols=113 Identities=14% Similarity=0.071 Sum_probs=64.6
Q ss_pred hHH-HHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCC--------------CEEE---
Q 037554 6 ALN-VQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDS--------------DFVL--- 67 (173)
Q Consensus 6 ~~~-v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~--------------d~~I--- 67 (173)
+.+ +...|++..++|+.-|+|-|.... .+.+..-|++|++.-... ++++
T Consensus 93 ~dDvv~~fv~~A~~~Gvd~irif~~lnd-------------~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a 159 (467)
T PRK14041 93 ADDVVELFVKKVAEYGLDIIRIFDALND-------------IRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFA 159 (467)
T ss_pred cchhhHHHHHHHHHCCcCEEEEEEeCCH-------------HHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHH
Confidence 445 344588888999999999987642 122333333333321100 1111
Q ss_pred -----ecCCcccc---cCCCCHHHHhhh-----h--cCC---------C---CCHHHHHhCCccEEEechHHH--HHHHH
Q 037554 68 -----ARADASFV---EAPRNDNEANWV-----W--GHT---------L---HTPEELKAMGFHLTVHPLTAL--YASAR 118 (173)
Q Consensus 68 -----AGAD~ifv---~g~~~~e~i~~i-----~--g~p---------~---~~~~eL~~lGv~~v~~~~~~~--~aa~~ 118 (173)
+|||.|.+ -|+-++.++.++ . +.| . -+.-.-.+.|+++|-.....+ ++...
T Consensus 160 ~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv~~~g~gagN~ 239 (467)
T PRK14041 160 RELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFGVPVEVHSHCTTGLASLAYLAAVEAGADMFDTAISPFSMGTSQP 239 (467)
T ss_pred HHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhcCCceEEEecCCCCcHHHHHHHHHHhCCCEEEeeccccCCCCCCh
Confidence 78998886 345677777666 1 122 1 233345588998886654443 55666
Q ss_pred HHHHHHHHHHHcC
Q 037554 119 ALVDVLKTLKESG 131 (173)
Q Consensus 119 a~~~~~~~l~~~g 131 (173)
++...+..|...|
T Consensus 240 atE~lv~~L~~~g 252 (467)
T PRK14041 240 PFESMYYAFRENG 252 (467)
T ss_pred hHHHHHHHHHhcC
Confidence 6777777666544
No 257
>PRK08005 epimerase; Validated
Probab=45.76 E-value=36 Score=27.84 Aligned_cols=75 Identities=12% Similarity=0.073 Sum_probs=50.3
Q ss_pred CcccccCCC-CHHHHhhhh--c-----------CCCCCHHHHHhCCccEEEechHHHHHHHHHHHHHHHHHHHcCCcccc
Q 037554 71 DASFVEAPR-NDNEANWVW--G-----------HTLHTPEELKAMGFHLTVHPLTALYASARALVDVLKTLKESGTTRDH 136 (173)
Q Consensus 71 D~ifv~g~~-~~e~i~~i~--g-----------~p~~~~~eL~~lGv~~v~~~~~~~~aa~~a~~~~~~~l~~~g~~~~~ 136 (173)
|+.|||.++ .++.++.+. . .|..-++++.++|.++++++.-.- ..+.+.++.+++.|.-.++
T Consensus 36 DG~FVPN~tfG~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~gad~It~H~Ea~----~~~~~~l~~Ik~~G~k~Gl 111 (210)
T PRK08005 36 DTSFINNITFGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPGWIFIHAESV----QNPSEILADIRAIGAKAGL 111 (210)
T ss_pred CCCcCCccccCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhCCCEEEEcccCc----cCHHHHHHHHHHcCCcEEE
Confidence 789999864 456666651 1 344456889999999999986632 3456788889999976654
Q ss_pred c-ccCCCHHHHHHh
Q 037554 137 L-EKMGTFEEFNQL 149 (173)
Q Consensus 137 ~-~~~~~~~e~~~l 149 (173)
. +-.++.+.+..+
T Consensus 112 AlnP~Tp~~~i~~~ 125 (210)
T PRK08005 112 ALNPATPLLPYRYL 125 (210)
T ss_pred EECCCCCHHHHHHH
Confidence 2 112466655544
No 258
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=45.66 E-value=65 Score=27.74 Aligned_cols=92 Identities=12% Similarity=0.098 Sum_probs=62.1
Q ss_pred ccCHHHHHHHHHHHHHhcCCCCEEEecCCcccccCCCCHHHHhhh-------------hc--------------CC--CC
Q 037554 43 IIPAEEHAAKIASARDAIGDSDFVLARADASFVEAPRNDNEANWV-------------WG--------------HT--LH 93 (173)
Q Consensus 43 l~~~ee~~~kI~Aa~~a~~~~d~~IAGAD~ifv~g~~~~e~i~~i-------------~g--------------~p--~~ 93 (173)
|..++.+..-|+|...|+...++- |++|-+++.+|+.++ +| +| .+
T Consensus 116 l~~p~~f~~QlrAilra~~~g~l~------Im~PmV~~~~E~~~~~~~l~~~~~~L~~~g~~~~~~~~vG~MiEvPsaal 189 (293)
T PF02896_consen 116 LAHPELFRTQLRAILRAAAEGNLR------IMFPMVSTVEEVREAKEILEEVKEELREEGIPFDPDLPVGIMIEVPSAAL 189 (293)
T ss_dssp HHSHHHHHHHHHHHHHHHHHSEEE------EEESS--SHHHHHHHHHHHHHHHHHHHHHTCTTGTT-EEEEEE-SHHHHH
T ss_pred ccchhhHHHHHHHHHHHHhhcCCE------EEecCCCcHHHHHHHHHHHHHHHHHHHHhccCccccceEEEEechhHHHH
Confidence 556888999999999987644555 678899999988777 01 12 25
Q ss_pred CHHHHHhCCccEEEechHHHH----------------------HHHHHHHHHHHHHHHcCCcccccccCC
Q 037554 94 TPEELKAMGFHLTVHPLTALY----------------------ASARALVDVLKTLKESGTTRDHLEKMG 141 (173)
Q Consensus 94 ~~~eL~~lGv~~v~~~~~~~~----------------------aa~~a~~~~~~~l~~~g~~~~~~~~~~ 141 (173)
..++|.+. ++++|+|+.=+. +.++.+..+.+.-.+.|..-.+.+.+.
T Consensus 190 ~~~~~~~~-~DF~SIGtNDLtQy~la~DR~n~~v~~~~d~~~Pavl~li~~vi~~a~~~g~~vsvCGe~a 258 (293)
T PF02896_consen 190 MADEFAKE-VDFFSIGTNDLTQYTLAADRDNARVAYLYDPLHPAVLRLIKQVIDAAHKAGKPVSVCGEMA 258 (293)
T ss_dssp THHHHHTT-SSEEEEEHHHHHHHHHTS-TTCCTCGGGS-TTSHHHHHHHHHHHHHHHHTT-EEEEESGGG
T ss_pred HHHHHHHH-CCEEEEChhHHHHHHhhcCCCCcchhhhcCcchHHHHHHHHHHHHHHhhcCcEEEEecCCC
Confidence 78999999 999999865442 344555566666666776655555554
No 259
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=45.20 E-value=76 Score=27.35 Aligned_cols=29 Identities=10% Similarity=0.056 Sum_probs=22.4
Q ss_pred CCCC-hHHHHHHHHHHHHhCceEEEeccCC
Q 037554 2 GGGN-ALNVQRTVKDLVAAGAAGCFLEDQS 30 (173)
Q Consensus 2 GyG~-~~~v~rtv~~~~~aGvagi~iEDq~ 30 (173)
||-. ..+..+.++.++++|+.+|++...+
T Consensus 143 G~~~~~~~~~~~a~~le~~G~d~i~vh~rt 172 (321)
T PRK10415 143 GWAPEHRNCVEIAQLAEDCGIQALTIHGRT 172 (321)
T ss_pred cccCCcchHHHHHHHHHHhCCCEEEEecCc
Confidence 4442 3467788999999999999997654
No 260
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=45.06 E-value=83 Score=27.62 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHhCceEEEe
Q 037554 6 ALNVQRTVKDLVAAGAAGCFL 26 (173)
Q Consensus 6 ~~~v~rtv~~~~~aGvagi~i 26 (173)
...+...++++.+.|+.+|-|
T Consensus 53 ~d~l~~~v~~~~~~Gi~~v~l 73 (320)
T cd04823 53 IDELLKEAEEAVDLGIPAVAL 73 (320)
T ss_pred HHHHHHHHHHHHHcCCCEEEE
Confidence 467788899999999999876
No 261
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=44.74 E-value=2e+02 Score=24.67 Aligned_cols=122 Identities=13% Similarity=0.052 Sum_probs=67.2
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE-----------------
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL----------------- 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I----------------- 67 (173)
++....+.++.++++|+.+|.|-=...|.+.+.. +. ...+.+.+-|++++++. +..+++
T Consensus 112 ~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~-g~--~~~~~~~eil~~v~~~~-~iPV~vKl~p~~~~~~~~a~~l~ 187 (334)
T PRK07565 112 SAGGWVDYARQIEQAGADALELNIYYLPTDPDIS-GA--EVEQRYLDILRAVKSAV-SIPVAVKLSPYFSNLANMAKRLD 187 (334)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCc-cc--cHHHHHHHHHHHHHhcc-CCcEEEEeCCCchhHHHHHHHHH
Confidence 4567788999999999999987332212111111 11 12233445556665543 233444
Q ss_pred -ecCCcccccCCC-----CHHH---------------------Hhhhh---cCC---------CCCHHHHHhCCccEEEe
Q 037554 68 -ARADASFVEAPR-----NDNE---------------------ANWVW---GHT---------LHTPEELKAMGFHLTVH 108 (173)
Q Consensus 68 -AGAD~ifv~g~~-----~~e~---------------------i~~i~---g~p---------~~~~~eL~~lGv~~v~~ 108 (173)
+|+|+|-+.... +.+. +.++. ..| .-++.+.-.+|.+.|.+
T Consensus 188 ~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipIig~GGI~s~~Da~e~l~aGA~~V~v 267 (334)
T PRK07565 188 AAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADLAATTGVHDAEDVIKMLLAGADVVMI 267 (334)
T ss_pred HcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHcCCCceee
Confidence 899998765431 1111 11110 012 23556666799999999
Q ss_pred chHHHHHHHHH---HHHHHHHHHHc
Q 037554 109 PLTALYASARA---LVDVLKTLKES 130 (173)
Q Consensus 109 ~~~~~~aa~~a---~~~~~~~l~~~ 130 (173)
+..++..-... +.+.+++++..
T Consensus 268 ~t~~~~~g~~~~~~i~~~L~~~l~~ 292 (334)
T PRK07565 268 ASALLRHGPDYIGTILRGLEDWMER 292 (334)
T ss_pred ehHHhhhCcHHHHHHHHHHHHHHHH
Confidence 98888753333 44444444443
No 262
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=44.68 E-value=2.4e+02 Score=25.51 Aligned_cols=65 Identities=20% Similarity=0.267 Sum_probs=43.9
Q ss_pred ecCCcccccCC-----CCHHHHhhh-------h------------c-CCCCCHHHHHhCCccEEEec-------hHHHHH
Q 037554 68 ARADASFVEAP-----RNDNEANWV-------W------------G-HTLHTPEELKAMGFHLTVHP-------LTALYA 115 (173)
Q Consensus 68 AGAD~ifv~g~-----~~~e~i~~i-------~------------g-~p~~~~~eL~~lGv~~v~~~-------~~~~~a 115 (173)
+|||.+.++++ -+.+++.++ + | +|..-.+-+..+|-+.|... +.-..+
T Consensus 292 aGaD~~~~~~~~Gk~~~~~~~~~~~~~~~~~p~~~~k~~~Pv~sGG~~~~~~p~~~~~~G~Dvil~~GGGi~gHP~G~~a 371 (407)
T TIGR03332 292 AGADFSLFPSPYGSVALEREDALAISKELTEDDAPFKKTFAVPSAGIHPGMVPLIMRDFGIDHIINAGGGIHGHPNGAQG 371 (407)
T ss_pred cCcCccccCCcccCCCCCHHHHHHHHHHHhccccCCCccEEecCCCcChhHHHHHHHHhCCceEEecCcccccCCCCchh
Confidence 99999998775 266776666 1 1 22334577888888766543 333467
Q ss_pred HHHHHHHHHHHHHHcCC
Q 037554 116 SARALVDVLKTLKESGT 132 (173)
Q Consensus 116 a~~a~~~~~~~l~~~g~ 132 (173)
-.++++++++...+..+
T Consensus 372 Ga~A~rqA~ea~~~g~~ 388 (407)
T TIGR03332 372 GGRAFRAAIDAVLEAKP 388 (407)
T ss_pred hHHHHHHHHHHHhcCCC
Confidence 88899999998875443
No 263
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=44.53 E-value=2.2e+02 Score=24.95 Aligned_cols=24 Identities=17% Similarity=-0.045 Sum_probs=19.3
Q ss_pred CCHHHHHhCCccEEEechHHHHHH
Q 037554 93 HTPEELKAMGFHLTVHPLTALYAS 116 (173)
Q Consensus 93 ~~~~eL~~lGv~~v~~~~~~~~aa 116 (173)
.++...-.+|.+.|.++...++++
T Consensus 274 ~dv~k~l~~GAd~v~ig~~~l~~~ 297 (352)
T PRK05437 274 LDIAKALALGADAVGMAGPFLKAA 297 (352)
T ss_pred HHHHHHHHcCCCEEEEhHHHHHHH
Confidence 355667778999999999888875
No 264
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=44.37 E-value=2.4e+02 Score=25.38 Aligned_cols=64 Identities=23% Similarity=0.315 Sum_probs=43.2
Q ss_pred ecCCcccccCC-----CCHHHHhhhh------------------c-CCCCCHHHHHhCCccEEEec-------hHHHHHH
Q 037554 68 ARADASFVEAP-----RNDNEANWVW------------------G-HTLHTPEELKAMGFHLTVHP-------LTALYAS 116 (173)
Q Consensus 68 AGAD~ifv~g~-----~~~e~i~~i~------------------g-~p~~~~~eL~~lGv~~v~~~-------~~~~~aa 116 (173)
+|||.+.++++ .+.+++.++. | +|..-.+-+..+|-+.+... +.-..+-
T Consensus 277 aGaD~~~~~~~~Gk~~~~~~~~~~~~~~~~~~~~~k~~~Pv~sgG~~~g~vp~~~~~~G~Dvi~~~GGGi~gHp~G~~aG 356 (391)
T cd08209 277 AGADAVLFPSPYGSVALSKEEALAIAEALRRGGAFKGVFPVPSAGIHPGLVPQLLRDFGTDVILNAGGGIHGHPDGAAAG 356 (391)
T ss_pred cCCCccccCCccCCcCCCHHHHHHHHHHHhCcCCCCCceEecCCCCChhHHHHHHHHhCCceEEecCcceecCCCCchhH
Confidence 99999988775 2566666660 1 23344577788898766543 3334678
Q ss_pred HHHHHHHHHHHHHcC
Q 037554 117 ARALVDVLKTLKESG 131 (173)
Q Consensus 117 ~~a~~~~~~~l~~~g 131 (173)
.++++++.+...+.-
T Consensus 357 a~A~rqA~ea~~~G~ 371 (391)
T cd08209 357 VRAFREAIDAVLAGE 371 (391)
T ss_pred HHHHHHHHHHHhcCC
Confidence 888999988877443
No 265
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=44.23 E-value=1.1e+02 Score=26.15 Aligned_cols=44 Identities=7% Similarity=-0.105 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHh---Cce---EEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc
Q 037554 6 ALNVQRTVKDLVAA---GAA---GCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60 (173)
Q Consensus 6 ~~~v~rtv~~~~~a---Gva---gi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~ 60 (173)
+..+.+.++.+.++ |+. -|+|=|.++ +..+.++.+.|++.++..
T Consensus 155 ~~~l~~~~~~~~~~~~~g~~~~~~i~laDTvG-----------~a~P~~v~~~~~~l~~~~ 204 (284)
T cd07942 155 LDFALEVCEAVIDVWQPTPENKIILNLPATVE-----------VATPNVYADQIEWFCRNL 204 (284)
T ss_pred HHHHHHHHHHHHHhhcCCCCcceEEEcccccc-----------ccCHHHHHHHHHHHHHhc
Confidence 45677777777666 443 688888874 456677777777776553
No 266
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=44.10 E-value=1.2e+02 Score=27.02 Aligned_cols=17 Identities=35% Similarity=0.518 Sum_probs=13.5
Q ss_pred HHHHHHHHHhCceEEEe
Q 037554 10 QRTVKDLVAAGAAGCFL 26 (173)
Q Consensus 10 ~rtv~~~~~aGvagi~i 26 (173)
.+.++.+.++||.+|.+
T Consensus 198 ~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 198 YTTALHLMRTGAAGVLV 214 (368)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 34567778899999977
No 267
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=43.96 E-value=84 Score=25.70 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=22.8
Q ss_pred ChHHHHHHHHHHHHhCceEEEec--cCCC
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLE--DQSW 31 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iE--Dq~~ 31 (173)
+..+..+.+++++++|+.=+|+. |..|
T Consensus 10 d~~~l~~~i~~l~~~g~~~lH~DvmDG~F 38 (220)
T PRK08883 10 DFARLGEDVEKVLAAGADVVHFDVMDNHY 38 (220)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCcc
Confidence 56889999999999999999974 6554
No 268
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=43.59 E-value=1.4e+02 Score=27.99 Aligned_cols=28 Identities=7% Similarity=0.036 Sum_probs=21.2
Q ss_pred CHHHHHhCCccEEEechHHHHHHHHHHH
Q 037554 94 TPEELKAMGFHLTVHPLTALYASARALV 121 (173)
Q Consensus 94 ~~~eL~~lGv~~v~~~~~~~~aa~~a~~ 121 (173)
.+..|..+|++.+|+++..+-.+-..++
T Consensus 510 ~~~~l~~~G~~~lsv~~~~i~~~k~~i~ 537 (565)
T TIGR01417 510 AIPLLLGLGLRELSMSASSILRIKMIIR 537 (565)
T ss_pred HHHHHHHCCCCEEEEChHhHHHHHHHHH
Confidence 3478889999999999887666555443
No 269
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=43.29 E-value=1e+02 Score=25.06 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE---------ecCCcccccCC
Q 037554 8 NVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL---------ARADASFVEAP 78 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I---------AGAD~ifv~g~ 78 (173)
++...++.+.++|+.+|-|-=++ =++.+.+..-++++++. .+..+++ -+||.+|++++
T Consensus 12 ~~~~ia~~v~~~gtDaI~VGGS~------------gvt~~~~~~~v~~ik~~-~~lPvilfp~~~~~i~~~aD~~~~~sl 78 (205)
T TIGR01769 12 EIEKIAKNAKDAGTDAIMVGGSL------------GIVESNLDQTVKKIKKI-TNLPVILFPGNVNGLSRYADAVFFMSL 78 (205)
T ss_pred HHHHHHHHHHhcCCCEEEEcCcC------------CCCHHHHHHHHHHHHhh-cCCCEEEECCCccccCcCCCEEEEEEe
Confidence 45556778999999999764221 13456666666666653 2334555 78999999986
No 270
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=42.98 E-value=1.3e+02 Score=24.99 Aligned_cols=132 Identities=10% Similarity=0.063 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE---------------ecCCc
Q 037554 8 NVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL---------------ARADA 72 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I---------------AGAD~ 72 (173)
+....++.|.+.|+--+||=|=..- .+|+. .-.+++++|.... ..+.+ +|||-
T Consensus 31 dP~~~A~~~~~~ga~~lhivDLd~a-~~g~~------~n~~~i~~i~~~~-----~~v~vGGGIrs~e~~~~~l~~Ga~r 98 (241)
T PRK14114 31 DPAELVEKLIEEGFTLIHVVDLSKA-IENSV------ENLPVLEKLSEFA-----EHIQIGGGIRSLDYAEKLRKLGYRR 98 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCc-ccCCc------chHHHHHHHHhhc-----CcEEEecCCCCHHHHHHHHHCCCCE
Confidence 5566788889999999999996532 12221 1245666665543 13445 89999
Q ss_pred ccccC--CCCHHHHhhhh--------------c---------CCCCC----HHHHHhCCccEEEechHHHHHHHHHH-HH
Q 037554 73 SFVEA--PRNDNEANWVW--------------G---------HTLHT----PEELKAMGFHLTVHPLTALYASARAL-VD 122 (173)
Q Consensus 73 ifv~g--~~~~e~i~~i~--------------g---------~p~~~----~~eL~~lGv~~v~~~~~~~~aa~~a~-~~ 122 (173)
|.+.. +++++.++++. | ....+ ++++.++|+..+++..-----++... .+
T Consensus 99 vvigT~a~~~p~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~d~e 178 (241)
T PRK14114 99 QIVSSKVLEDPSFLKFLKEIDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFS 178 (241)
T ss_pred EEECchhhCCHHHHHHHHHhCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCEEEEEeechhhcCCCcCHH
Confidence 87744 26776665540 1 01122 47788999999998733322222211 12
Q ss_pred HHHHHHHcCCcc-cccccCCCHHHHHHhcC
Q 037554 123 VLKTLKESGTTR-DHLEKMGTFEEFNQLVN 151 (173)
Q Consensus 123 ~~~~l~~~g~~~-~~~~~~~~~~e~~~l~g 151 (173)
.++.+.+.-... -..+..-+.+++.++..
T Consensus 179 l~~~l~~~~~~pviasGGv~s~~Dl~~l~~ 208 (241)
T PRK14114 179 LTRKIAIEAEVKVFAAGGISSENSLKTAQR 208 (241)
T ss_pred HHHHHHHHCCCCEEEECCCCCHHHHHHHHh
Confidence 223333321111 12344556677765543
No 271
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=42.93 E-value=1.3e+02 Score=24.41 Aligned_cols=43 Identities=14% Similarity=-0.015 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHH
Q 037554 6 ALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASAR 57 (173)
Q Consensus 6 ~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~ 57 (173)
+..+.......+..|..=|+|||..+. ...++ .+++++|+...
T Consensus 133 ~e~~~~~a~aa~~~G~~~i~Le~~sGa--------~~~v~-~e~i~~Vk~~~ 175 (205)
T TIGR01769 133 PEIAAAYCLAAKYFGMKWVYLEAGSGA--------SYPVN-PETISLVKKAS 175 (205)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCCCC--------CCCCC-HHHHHHHHHhh
Confidence 456667777777899999999996532 11233 57787887654
No 272
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=42.91 E-value=2e+02 Score=24.88 Aligned_cols=34 Identities=6% Similarity=-0.010 Sum_probs=21.5
Q ss_pred HHHHHHHHh-CceEEEeccCCCCccCCCCCCCcccCHHHHH
Q 037554 11 RTVKDLVAA-GAAGCFLEDQSWPKKCGHMHGKQIIPAEEHA 50 (173)
Q Consensus 11 rtv~~~~~a-Gvagi~iEDq~~pKrcg~~~g~~l~~~ee~~ 50 (173)
+.++..+++ |+.+|.|-|.-.- + ...++|++++-
T Consensus 159 ~y~~~qiea~Gad~I~i~Ddwa~----~--~~~~LSpe~f~ 193 (321)
T cd03309 159 KLYERRIKHLEPDLLVYHDDLGS----Q--KGSFISPATFR 193 (321)
T ss_pred HHHHHHHHHhCCCEEEEeCCCcc----c--cCCccCHHHHH
Confidence 344555666 9999999875421 1 12577777765
No 273
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=42.79 E-value=1.2e+02 Score=26.57 Aligned_cols=21 Identities=14% Similarity=0.120 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHhCceEEEe
Q 037554 6 ALNVQRTVKDLVAAGAAGCFL 26 (173)
Q Consensus 6 ~~~v~rtv~~~~~aGvagi~i 26 (173)
...+.+.++++.+.|+-+|-|
T Consensus 60 id~l~~~~~~~~~~Gi~~v~l 80 (322)
T PRK13384 60 ESALADEIERLYALGIRYVMP 80 (322)
T ss_pred HHHHHHHHHHHHHcCCCEEEE
Confidence 356778899999999999984
No 274
>PLN02826 dihydroorotate dehydrogenase
Probab=42.74 E-value=1.2e+02 Score=27.42 Aligned_cols=89 Identities=13% Similarity=0.162 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhCceEEEeccCCC---------Cc--cCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEEecCCcccc
Q 037554 7 LNVQRTVKDLVAAGAAGCFLEDQSW---------PK--KCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVLARADASFV 75 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iEDq~~---------pK--rcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~IAGAD~ifv 75 (173)
.++...++.++++|+.||.+-..+. +. ..|=+.|+++.+. ..+-|+.+.++.. .++-| |-+
T Consensus 276 ~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~--sl~~v~~l~~~~~-~~ipI-----Igv 347 (409)
T PLN02826 276 EDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDL--STEVLREMYRLTR-GKIPL-----VGC 347 (409)
T ss_pred HHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHH--HHHHHHHHHHHhC-CCCcE-----EEE
Confidence 3677888999999999998877542 11 1222345666654 3333444443322 23333 334
Q ss_pred cCCCCHHHHhhhhcCCCCCHHHHHhCCccEEEechHHHH
Q 037554 76 EAPRNDNEANWVWGHTLHTPEELKAMGFHLTVHPLTALY 114 (173)
Q Consensus 76 ~g~~~~e~i~~i~g~p~~~~~eL~~lGv~~v~~~~~~~~ 114 (173)
-|+.+.+++ -+.-.+|.+.|-+++.++.
T Consensus 348 GGI~sg~Da-----------~e~i~AGAs~VQv~Ta~~~ 375 (409)
T PLN02826 348 GGVSSGEDA-----------YKKIRAGASLVQLYTAFAY 375 (409)
T ss_pred CCCCCHHHH-----------HHHHHhCCCeeeecHHHHh
Confidence 455555544 2444456666655555444
No 275
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=42.63 E-value=55 Score=28.99 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=14.4
Q ss_pred HHHHHHHHHhCceEEEec
Q 037554 10 QRTVKDLVAAGAAGCFLE 27 (173)
Q Consensus 10 ~rtv~~~~~aGvagi~iE 27 (173)
.+.++.++++||.||-+-
T Consensus 161 ~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 161 GEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 356788999999998653
No 276
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=42.62 E-value=1.1e+02 Score=27.30 Aligned_cols=24 Identities=8% Similarity=0.047 Sum_probs=19.9
Q ss_pred ChHHHHHHHHHHHHhCceEEEecc
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLED 28 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iED 28 (173)
++.+..+.+++++++||.+|.|-=
T Consensus 125 s~~~~~~~a~~~e~~GaD~iELNi 148 (385)
T PLN02495 125 NKDAWEEIIERVEETGVDALEINF 148 (385)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEEC
Confidence 467788899999999999997643
No 277
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=42.51 E-value=31 Score=29.00 Aligned_cols=46 Identities=13% Similarity=0.019 Sum_probs=29.8
Q ss_pred HHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc
Q 037554 12 TVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60 (173)
Q Consensus 12 tv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~ 60 (173)
-+++..++|+..|+|-..+.+. |...+.-.++++..++++.+++..
T Consensus 76 di~~a~~~g~~~i~i~~~~S~~---~~~~~~~~~~~e~~~~~~~~i~~a 121 (262)
T cd07948 76 DARIAVETGVDGVDLVFGTSPF---LREASHGKSITEIIESAVEVIEFV 121 (262)
T ss_pred HHHHHHHcCcCEEEEEEecCHH---HHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4667778899999998876542 221122246788888886666543
No 278
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=42.49 E-value=1.6e+02 Score=25.01 Aligned_cols=24 Identities=8% Similarity=-0.060 Sum_probs=18.5
Q ss_pred ChHHHHHHHHHHHHh--CceEEEecc
Q 037554 5 NALNVQRTVKDLVAA--GAAGCFLED 28 (173)
Q Consensus 5 ~~~~v~rtv~~~~~a--Gvagi~iED 28 (173)
+..++.+.++.+.++ ||.||.+=.
T Consensus 169 ~~~~~~~~a~~l~~~~~G~~gi~~~N 194 (294)
T cd04741 169 DPAQFDTLAEALNAFACPISFITATN 194 (294)
T ss_pred CHHHHHHHHHHHhccccCCcEEEEEc
Confidence 445677888888888 999999643
No 279
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.42 E-value=49 Score=28.26 Aligned_cols=43 Identities=14% Similarity=0.072 Sum_probs=32.6
Q ss_pred ecCCcccccCCCCHHHHhhh-h---c-CC--------CCCHHHHHhCCccEEEechH
Q 037554 68 ARADASFVEAPRNDNEANWV-W---G-HT--------LHTPEELKAMGFHLTVHPLT 111 (173)
Q Consensus 68 AGAD~ifv~g~~~~e~i~~i-~---g-~p--------~~~~~eL~~lGv~~v~~~~~ 111 (173)
+|||+|..+ .-++++++++ . + .| .-++.++.+.|+..++.|..
T Consensus 208 ~gaD~I~LD-~~~~e~l~~~v~~~~~~i~leAsGGIt~~ni~~~a~tGvD~Isvg~l 263 (277)
T PRK05742 208 AGADIVMLD-ELSLDDMREAVRLTAGRAKLEASGGINESTLRVIAETGVDYISIGAM 263 (277)
T ss_pred cCCCEEEEC-CCCHHHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHcCCCEEEEChh
Confidence 899999985 4588888876 1 1 23 13568999999999999853
No 280
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=42.18 E-value=98 Score=26.13 Aligned_cols=52 Identities=8% Similarity=-0.001 Sum_probs=33.9
Q ss_pred ecCCcccccCCC-----CHHHHhhh-h---cCC-------------CCCHHHHHhCCccEEEechHHHHHHHHHH
Q 037554 68 ARADASFVEAPR-----NDNEANWV-W---GHT-------------LHTPEELKAMGFHLTVHPLTALYASARAL 120 (173)
Q Consensus 68 AGAD~ifv~g~~-----~~e~i~~i-~---g~p-------------~~~~~eL~~lGv~~v~~~~~~~~aa~~a~ 120 (173)
+|||+|.+-.++ |.+-++++ . +.| .-.+++|.++||.||......- .+...+
T Consensus 85 ~GadGvV~G~L~~dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTSGg~~-~a~~g~ 158 (248)
T PRK11572 85 LGFPGLVTGVLDVDGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLGVARILTSGQQQ-DAEQGL 158 (248)
T ss_pred cCCCEEEEeeECCCCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcCCCEEECCCCCC-CHHHHH
Confidence 899998774433 55666666 1 122 2357999999999998875553 344443
No 281
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=42.11 E-value=1.7e+02 Score=26.61 Aligned_cols=73 Identities=21% Similarity=0.312 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE-------------------
Q 037554 7 LNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL------------------- 67 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I------------------- 67 (173)
....+.+++..++||.-+ || +| || +|.++...-++..+....+-.|++
T Consensus 243 ~~lgeL~~rA~e~gVQvM-VE---GP---GH------vPl~~I~~nv~lqK~lc~~APfYvLGPLvTDiApGYDHItsAI 309 (423)
T TIGR00190 243 ITLGELVERAREADVQCM-VE---GP---GH------VPLDQIEANVRLQKELCDEAPFYVLGPLVTDIAPGYDHITSAI 309 (423)
T ss_pred HHHHHHHHHHHHcCCeEE-EE---CC---CC------CcHHHHHHHHHHHHHhhCCCCeeecCCcccccCCCchHHHHHH
Confidence 345678899999998654 34 23 34 578888888888777776667777
Q ss_pred -------ecCCcccccCCCCHHHHhhhhcCCCCCHHHHHh
Q 037554 68 -------ARADASFVEAPRNDNEANWVWGHTLHTPEELKA 100 (173)
Q Consensus 68 -------AGAD~ifv~g~~~~e~i~~i~g~p~~~~~eL~~ 100 (173)
+|||.+.- ++..|.+ -+++.++.++
T Consensus 310 GgAiAa~~GAdfLCY--VTPaEHL------~LP~~eDVre 341 (423)
T TIGR00190 310 GAAIAGWAGADFLCY--VTPKEHL------ALPNVEDVKE 341 (423)
T ss_pred HHHHHHHcCCCeEEe--cCcHHHc------CCCCHHHHHH
Confidence 78986653 4444544 3567777665
No 282
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=42.03 E-value=1.4e+02 Score=29.21 Aligned_cols=98 Identities=14% Similarity=0.054 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEecCCc--ccccCCCCHHHHhhh------hc---------------CC--CCCHHHHHh
Q 037554 46 AEEHAAKIASARDAIGDSDFVLARADA--SFVEAPRNDNEANWV------WG---------------HT--LHTPEELKA 100 (173)
Q Consensus 46 ~ee~~~kI~Aa~~a~~~~d~~IAGAD~--ifv~g~~~~e~i~~i------~g---------------~p--~~~~~eL~~ 100 (173)
++.+..-|||+..+.. | +|+.. |++|-+++.+|++++ .+ +| ...++++.+
T Consensus 609 ~~lf~~qlraI~ral~--d---~G~~~~~Im~PmV~s~eE~~~~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~ 683 (782)
T TIGR01418 609 EEAFRLECRAIKRVRE--E---MGLTNVEVMIPFVRTPEEGKRALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFAK 683 (782)
T ss_pred HHHHHHHHHHHHHHHH--h---cCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHHH
Confidence 6788889999998852 2 68888 899999999998876 01 11 246788888
Q ss_pred CCccEEEechHHHHH----------------------HHHHHHHHHHHHHHcCCcccccccCC--CHHHHHHh
Q 037554 101 MGFHLTVHPLTALYA----------------------SARALVDVLKTLKESGTTRDHLEKMG--TFEEFNQL 149 (173)
Q Consensus 101 lGv~~v~~~~~~~~a----------------------a~~a~~~~~~~l~~~g~~~~~~~~~~--~~~e~~~l 149 (173)
. ++.+++|+.=+.. ...++.++.+..++.|..-+....+. +...+..+
T Consensus 684 ~-vDfisIGtnDLtq~~lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~vgicge~~~~~p~~~~~l 755 (782)
T TIGR01418 684 E-FDGFSIGSNDLTQLTLGVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKVGICGQAPSDYPEVVEFL 755 (782)
T ss_pred h-CCEEEECchHHHHHHhCccCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeEEEeCCCCCCCHHHHHHH
Confidence 8 9999999653332 34455555666666776555544333 24444443
No 283
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=41.87 E-value=2.9e+02 Score=25.55 Aligned_cols=39 Identities=21% Similarity=0.123 Sum_probs=26.9
Q ss_pred CHHHHHhCCccEEEec-------hHHHHHHHHHHHHHHHHHHHcCC
Q 037554 94 TPEELKAMGFHLTVHP-------LTALYASARALVDVLKTLKESGT 132 (173)
Q Consensus 94 ~~~eL~~lGv~~v~~~-------~~~~~aa~~a~~~~~~~l~~~g~ 132 (173)
-.+-+..+|-+.|... +....+-.+|++++++...+..+
T Consensus 380 vp~~~~~~G~Dvil~~GGGi~gHP~G~~aGa~A~rqA~ea~~~g~~ 425 (468)
T PRK04208 380 MPALLDIFGDDVVLQFGGGTHGHPDGTAAGATANRVALEACVEARN 425 (468)
T ss_pred HHHHHHHhCCceEEecCCceecCCCChhhHHHHHHHHHHHHHhcCc
Confidence 3567778887765432 34446788899999999776544
No 284
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=41.72 E-value=77 Score=27.86 Aligned_cols=20 Identities=25% Similarity=0.061 Sum_probs=13.9
Q ss_pred ecCCcccc-cCCCCHHHHhhh
Q 037554 68 ARADASFV-EAPRNDNEANWV 87 (173)
Q Consensus 68 AGAD~ifv-~g~~~~e~i~~i 87 (173)
-|||+|+| |++.-.+-|+++
T Consensus 240 EGAD~lMVKPal~YLDIi~~~ 260 (323)
T PRK09283 240 EGADMVMVKPALPYLDIIRRV 260 (323)
T ss_pred hCCCEEEEcCCchHHHHHHHH
Confidence 58888887 666566666666
No 285
>KOG2949 consensus Ketopantoate hydroxymethyltransferase [Coenzyme transport and metabolism]
Probab=41.62 E-value=1.1e+02 Score=26.12 Aligned_cols=74 Identities=22% Similarity=0.123 Sum_probs=51.9
Q ss_pred HHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE------------------------e
Q 037554 13 VKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL------------------------A 68 (173)
Q Consensus 13 v~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I------------------------A 68 (173)
.+-+..+|..=+-+-|+..----||..- --+|.+||.-..++.+.+..++=++. +
T Consensus 51 a~~~~~ag~dv~LVGDSl~Mt~~GhdtT-lpiSl~e~~yH~~sV~Rga~~~llv~DlPFgtyeS~~sda~knAv~vmk~~ 129 (306)
T KOG2949|consen 51 AVHFDTAGIDVCLVGDSLAMTVHGHDTT-LPISLEEMLYHCRSVARGAKRPLLVGDLPFGTYESSWSDAVKNAVRVMKEG 129 (306)
T ss_pred hhhhhhcCCcEEEeccchhheeeccccc-eeeeHHHHHHHHHHHHccCCCceEEEecCcccccccHHHHHHHHHHHHHhc
Confidence 4557788888888899876555566433 34799999999999887766543333 8
Q ss_pred cCCcccccCCCC--HHHHhhh
Q 037554 69 RADASFVEAPRN--DNEANWV 87 (173)
Q Consensus 69 GAD~ifv~g~~~--~e~i~~i 87 (173)
|+|.|=++|-.. .+-++++
T Consensus 130 g~~~vK~EgGs~~~~~~~~~l 150 (306)
T KOG2949|consen 130 GMDAVKLEGGSNSRITAAKRL 150 (306)
T ss_pred CCceEEEccCcHHHHHHHHHH
Confidence 999999988532 2444455
No 286
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=41.46 E-value=1.1e+02 Score=26.70 Aligned_cols=67 Identities=21% Similarity=0.161 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHHHhC-ceEEEeccCCCCccCCCCCC-CcccCHHHHHHHHHHHHHhcCCCCEEE---------------
Q 037554 5 NALNVQRTVKDLVAAG-AAGCFLEDQSWPKKCGHMHG-KQIIPAEEHAAKIASARDAIGDSDFVL--------------- 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aG-vagi~iEDq~~pKrcg~~~g-~~l~~~ee~~~kI~Aa~~a~~~~d~~I--------------- 67 (173)
......+.++.++++| +.+|.|- =.|.|+.+ ..|-.--|.+.+|-.++++.....+++
T Consensus 107 ~~~~~~d~~~~~~~~~~ad~ielN-----iScPnt~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~ 181 (310)
T COG0167 107 SEEAWADYARLLEEAGDADAIELN-----ISCPNTPGGRALGQDPELLEKLLEAVKAATKVPVFVKLAPNITDIDEIAKA 181 (310)
T ss_pred cHHHHHHHHHHHHhcCCCCEEEEE-----ccCCCCCChhhhccCHHHHHHHHHHHHhcccCceEEEeCCCHHHHHHHHHH
Confidence 3456778888888888 6776553 34778766 344422356666666666655566777
Q ss_pred ---ecCCccccc
Q 037554 68 ---ARADASFVE 76 (173)
Q Consensus 68 ---AGAD~ifv~ 76 (173)
+|||+|-+.
T Consensus 182 ~~~~g~Dgl~~~ 193 (310)
T COG0167 182 AEEAGADGLIAI 193 (310)
T ss_pred HHHcCCcEEEEE
Confidence 899988753
No 287
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=41.45 E-value=73 Score=27.87 Aligned_cols=20 Identities=25% Similarity=-0.014 Sum_probs=13.3
Q ss_pred ecCCcccc-cCCCCHHHHhhh
Q 037554 68 ARADASFV-EAPRNDNEANWV 87 (173)
Q Consensus 68 AGAD~ifv-~g~~~~e~i~~i 87 (173)
-|||+|+| |++.-.+-|+++
T Consensus 232 EGAD~lMVKPal~YLDIi~~~ 252 (314)
T cd00384 232 EGADILMVKPALAYLDIIRDV 252 (314)
T ss_pred hCCCEEEEcCCchHHHHHHHH
Confidence 57887777 565556666665
No 288
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=41.35 E-value=86 Score=26.07 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=22.1
Q ss_pred ChHHHHHHHHHHHHhCceEEEec--cCCC
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLE--DQSW 31 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iE--Dq~~ 31 (173)
+..+..+-+++++++|+.=||+. |.-|
T Consensus 14 D~~~l~~el~~~~~agad~iH~DVMDghF 42 (220)
T COG0036 14 DFARLGEELKALEAAGADLIHIDVMDGHF 42 (220)
T ss_pred CHhHHHHHHHHHHHcCCCEEEEeccCCCc
Confidence 45788899999999999999975 6443
No 289
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=41.19 E-value=57 Score=26.35 Aligned_cols=16 Identities=31% Similarity=0.287 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhCce
Q 037554 7 LNVQRTVKDLVAAGAA 22 (173)
Q Consensus 7 ~~v~rtv~~~~~aGva 22 (173)
..+.+|++.+.++|..
T Consensus 94 ~gl~~t~~~l~~~~i~ 109 (239)
T cd07381 94 EGLLDTLDALDEAGIA 109 (239)
T ss_pred HHHHHHHHHHHHcCCc
Confidence 4566788888777753
No 290
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=40.88 E-value=81 Score=26.57 Aligned_cols=59 Identities=15% Similarity=0.220 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE---------ecCCcccccC
Q 037554 7 LNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL---------ARADASFVEA 77 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I---------AGAD~ifv~g 77 (173)
.+..+.++...++|..+|-|-=+.. ++.+.+.+-++++++ +.+..+++ =+||.+|+++
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGGS~g------------vt~~~~~~~v~~ik~-~~~lPvilfP~~~~~is~~aDavff~s 94 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGGSDG------------VTEENVDNVVEAIKE-RTDLPVILFPGSPSGISPYADAVFFPS 94 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECCccc------------ccHHHHHHHHHHHHh-hcCCCEEEecCChhccCccCCeEEEEE
Confidence 3456778899999999998865442 344445555555554 43444555 6899999988
Q ss_pred C
Q 037554 78 P 78 (173)
Q Consensus 78 ~ 78 (173)
+
T Consensus 95 v 95 (240)
T COG1646 95 V 95 (240)
T ss_pred E
Confidence 6
No 291
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=40.70 E-value=2.5e+02 Score=24.48 Aligned_cols=48 Identities=21% Similarity=0.043 Sum_probs=29.3
Q ss_pred ChHHHHHHHHHHHHhCceEEEec--cCCCCccCCCCCCCcccCHHHHHHHHH
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLE--DQSWPKKCGHMHGKQIIPAEEHAAKIA 54 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iE--Dq~~pKrcg~~~g~~l~~~ee~~~kI~ 54 (173)
+..++.+.++.+.++|+.-|.+- |...... ...+.+..|..|.+++++
T Consensus 23 ~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s--~~~g~~~~~~~e~i~~~~ 72 (337)
T PRK08195 23 TLEQVRAIARALDAAGVPVIEVTHGDGLGGSS--FNYGFGAHTDEEYIEAAA 72 (337)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeecCCCCCCcc--ccCCCCCCCHHHHHHHHH
Confidence 35788899999999999999773 2211111 111334456666665554
No 292
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.67 E-value=53 Score=28.20 Aligned_cols=44 Identities=11% Similarity=0.029 Sum_probs=32.5
Q ss_pred ecCCcccccCCCCHHHHhhh-----h-c--CC--------CCCHHHHHhCCccEEEechHH
Q 037554 68 ARADASFVEAPRNDNEANWV-----W-G--HT--------LHTPEELKAMGFHLTVHPLTA 112 (173)
Q Consensus 68 AGAD~ifv~g~~~~e~i~~i-----~-g--~p--------~~~~~eL~~lGv~~v~~~~~~ 112 (173)
+|||+|.+.- -+++++++. + . .| .-++.++.+.|++.|+.+...
T Consensus 215 ~GaD~I~LDn-~~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~~ya~tGvD~Isvgsl~ 274 (288)
T PRK07428 215 YGADIIMLDN-MPVDLMQQAVQLIRQQNPRVKIEASGNITLETIRAVAETGVDYISSSAPI 274 (288)
T ss_pred cCCCEEEECC-CCHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEEchhh
Confidence 9999999864 577777765 1 1 12 246789999999999998543
No 293
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=40.67 E-value=71 Score=24.16 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=17.6
Q ss_pred HHHHhCCccEEEechHHHHHHHH
Q 037554 96 EELKAMGFHLTVHPLTALYASAR 118 (173)
Q Consensus 96 ~eL~~lGv~~v~~~~~~~~aa~~ 118 (173)
++|+++||+++.-|.+.....+.
T Consensus 102 ~~L~~~Gv~~vf~pgt~~~~i~~ 124 (128)
T cd02072 102 KRFKEMGFDRVFAPGTPPEEAIA 124 (128)
T ss_pred HHHHHcCCCEEECcCCCHHHHHH
Confidence 55999999999887776555543
No 294
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=40.66 E-value=2.4e+02 Score=24.32 Aligned_cols=26 Identities=19% Similarity=0.015 Sum_probs=19.9
Q ss_pred CCHHHHHhCCccEEEechHHHHHHHH
Q 037554 93 HTPEELKAMGFHLTVHPLTALYASAR 118 (173)
Q Consensus 93 ~~~~eL~~lGv~~v~~~~~~~~aa~~ 118 (173)
.++...-.+|.+.|.++..++++.+.
T Consensus 268 ~dv~kal~lGAd~V~i~~~~L~~~~~ 293 (326)
T cd02811 268 LDIAKALALGADLVGMAGPFLKAALE 293 (326)
T ss_pred HHHHHHHHhCCCEEEEcHHHHHHHhc
Confidence 34556667899999999888877763
No 295
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=40.58 E-value=92 Score=27.33 Aligned_cols=20 Identities=15% Similarity=-0.029 Sum_probs=13.4
Q ss_pred ecCCcccc-cCCCCHHHHhhh
Q 037554 68 ARADASFV-EAPRNDNEANWV 87 (173)
Q Consensus 68 AGAD~ifv-~g~~~~e~i~~i 87 (173)
-|||+|+| |++.-.+-|+++
T Consensus 237 EGAD~lMVKPal~YLDIi~~~ 257 (320)
T cd04824 237 EGADMIMVKPGTPYLDIVREA 257 (320)
T ss_pred hCCCEEEEcCCchHHHHHHHH
Confidence 57888777 555556666666
No 296
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=40.25 E-value=2.1e+02 Score=23.52 Aligned_cols=78 Identities=10% Similarity=0.058 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEEecCCcccccCCCCHHHHhhh
Q 037554 8 NVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVLARADASFVEAPRNDNEANWV 87 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~IAGAD~ifv~g~~~~e~i~~i 87 (173)
+..+.++.|.+.|+..||+=|-...+. ++. .--+++.+|+... +..+ ++--|+++.+++
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~-----~~~--~n~~~i~~i~~~~----~~pv-------~~~GGi~s~~d~--- 89 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASSE-----GRT--TMIDVVERTAETV----FIPL-------TVGGGIKSIEDV--- 89 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcccc-----cCh--hhHHHHHHHHHhc----CCCE-------EEECCCCCHHHH---
Confidence 666788888889999999999764311 111 1234444554332 1222 233456666655
Q ss_pred hcCCCCCHHHHHhCCccEEEechHHHH
Q 037554 88 WGHTLHTPEELKAMGFHLTVHPLTALY 114 (173)
Q Consensus 88 ~g~p~~~~~eL~~lGv~~v~~~~~~~~ 114 (173)
+++..+|+++|+.|...+.
T Consensus 90 --------~~~~~~Ga~~vivgt~~~~ 108 (254)
T TIGR00735 90 --------DKLLRAGADKVSINTAAVK 108 (254)
T ss_pred --------HHHHHcCCCEEEEChhHhh
Confidence 3455567777777766554
No 297
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=40.09 E-value=1.1e+02 Score=26.72 Aligned_cols=107 Identities=15% Similarity=0.129 Sum_probs=57.7
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCC-----------c-cCCC--CCCCcccCHHHHHHHHHHHHHhcCCCCEEEecC
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWP-----------K-KCGH--MHGKQIIPAEEHAAKIASARDAIGDSDFVLARA 70 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~p-----------K-rcg~--~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~IAGA 70 (173)
+..++...++.++++|+.||.+--.+.. + +.+| ++|++|.|+ ..+-|+..... .++++-|.|.
T Consensus 171 ~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~--al~~v~~l~~~-~~~~ipIIGv 247 (310)
T COG0167 171 NITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPI--ALRVVAELYKR-LGGDIPIIGV 247 (310)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcCcccchHH--HHHHHHHHHHh-cCCCCcEEEe
Confidence 3467888999999999999887664431 1 1222 245676665 33334433332 2345666554
Q ss_pred CcccccCCCCHHHHhhh-h-cCCCCCHHHHHhCCccEEEechHHHHHHHHHHHHHHH
Q 037554 71 DASFVEAPRNDNEANWV-W-GHTLHTPEELKAMGFHLTVHPLTALYASARALVDVLK 125 (173)
Q Consensus 71 D~ifv~g~~~~e~i~~i-~-g~p~~~~~eL~~lGv~~v~~~~~~~~aa~~a~~~~~~ 125 (173)
-|+.|.++..++ - | ..+-+.|-..+-.|+..++-..+.+.+.++
T Consensus 248 -----GGI~s~~DA~E~i~aG------A~~vQv~Tal~~~Gp~i~~~I~~~l~~~l~ 293 (310)
T COG0167 248 -----GGIETGEDALEFILAG------ASAVQVGTALIYKGPGIVKEIIKGLARWLE 293 (310)
T ss_pred -----cCcCcHHHHHHHHHcC------CchheeeeeeeeeCchHHHHHHHHHHHHHH
Confidence 445555544332 1 2 122234444555666666666665555444
No 298
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=39.84 E-value=1.1e+02 Score=26.95 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHhCceEEEe
Q 037554 6 ALNVQRTVKDLVAAGAAGCFL 26 (173)
Q Consensus 6 ~~~v~rtv~~~~~aGvagi~i 26 (173)
...+...|+++.+.|+.+|-|
T Consensus 58 ~d~l~~~v~~~~~~Gi~av~L 78 (323)
T PRK09283 58 IDLLVKEAEEAVELGIPAVAL 78 (323)
T ss_pred HHHHHHHHHHHHHCCCCEEEE
Confidence 356788899999999999876
No 299
>PRK03739 2-isopropylmalate synthase; Validated
Probab=39.49 E-value=97 Score=29.01 Aligned_cols=45 Identities=7% Similarity=-0.076 Sum_probs=32.1
Q ss_pred ChHHHHHHHHHHHHh---CceE---EEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc
Q 037554 5 NALNVQRTVKDLVAA---GAAG---CFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60 (173)
Q Consensus 5 ~~~~v~rtv~~~~~a---Gvag---i~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~ 60 (173)
++.-+.+.++.+.++ |+.. |+|=|.++ +..++++...|+..++..
T Consensus 183 d~~~l~~~~~~a~~~~~ag~~~~~~i~l~DTvG-----------~~~P~~~~~~v~~l~~~~ 233 (552)
T PRK03739 183 ELDFALEVCDAVIDVWQPTPERKVILNLPATVE-----------MSTPNVYADQIEWMCRNL 233 (552)
T ss_pred CHHHHHHHHHHHHHhhcCCCCceeEEEeccCCc-----------CcCHHHHHHHHHHHHHhC
Confidence 356677788887764 4443 99999885 566788888888877653
No 300
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=39.16 E-value=1.5e+02 Score=27.46 Aligned_cols=58 Identities=14% Similarity=0.145 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhCceEEEeccCCCCcc-CCCCCCCcccCHHHHHHHHHHHHHh-----cCCCCEEE
Q 037554 8 NVQRTVKDLVAAGAAGCFLEDQSWPKK-CGHMHGKQIIPAEEHAAKIASARDA-----IGDSDFVL 67 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~iEDq~~pKr-cg~~~g~~l~~~ee~~~kI~Aa~~a-----~~~~d~~I 67 (173)
-+.+++..|.+.|+. .|+-..+.-- ||-.+...+-++++.+..+...... ..+..++|
T Consensus 198 at~~Nl~~L~~~G~~--vi~P~~g~lA~~g~~G~Grm~e~~~I~~~v~~~~~~~~~~~l~gkkvLI 261 (475)
T PRK13982 198 ATRRNVAQLKRDGVH--MIGPNAGEMAERGEAGVGRMAEPLEIAAAAEALLRPPQPKPLAGRRVLI 261 (475)
T ss_pred HHHHHHHHHHHCCCE--EECCCCCccccCCCcCCCCCCCHHHHHHHHHHHHhhccccccCCCEEEE
Confidence 356899999998865 3344333222 6766556788999999998877643 13456777
No 301
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=39.06 E-value=1e+02 Score=27.54 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=13.7
Q ss_pred HHHHHHHHhCceEEEecc
Q 037554 11 RTVKDLVAAGAAGCFLED 28 (173)
Q Consensus 11 rtv~~~~~aGvagi~iED 28 (173)
..++...++||.||.+.-
T Consensus 265 ~dA~~a~~~G~d~I~vsn 282 (383)
T cd03332 265 DDARRAVEAGVDGVVVSN 282 (383)
T ss_pred HHHHHHHHCCCCEEEEcC
Confidence 456677888999998873
No 302
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=38.94 E-value=84 Score=26.57 Aligned_cols=147 Identities=19% Similarity=0.126 Sum_probs=76.3
Q ss_pred CCCCChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCc-----------ccCHHHHHHHHHHHHHhcCCCCEEE--
Q 037554 1 TGGGNALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQ-----------IIPAEEHAAKIASARDAIGDSDFVL-- 67 (173)
Q Consensus 1 tGyG~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~-----------l~~~ee~~~kI~Aa~~a~~~~d~~I-- 67 (173)
.||-+.....+.++.+.+.||.-|-|- +|=.-....|.. =++.+...+-++.+++...+..+++
T Consensus 18 aG~P~~~~~~~~~~~l~~~GaD~iEiG---iPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~ 94 (259)
T PF00290_consen 18 AGYPDLETTLEILKALEEAGADIIEIG---IPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMT 94 (259)
T ss_dssp TTSSSHHHHHHHHHHHHHTTBSSEEEE-----SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEC---CCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEe
Confidence 488888999999999999999877652 121111112321 1234444444555553444566776
Q ss_pred -------------------ecCCcccccCCCC--HHHHhhh--h-c-------CCCCCHHHHHh---C--CccEE--Eec
Q 037554 68 -------------------ARADASFVEAPRN--DNEANWV--W-G-------HTLHTPEELKA---M--GFHLT--VHP 109 (173)
Q Consensus 68 -------------------AGAD~ifv~g~~~--~e~i~~i--~-g-------~p~~~~~eL~~---l--Gv~~v--~~~ 109 (173)
+|+|++.+|-+.- .+++... . | +|..+.++++. . ||=.+ ..|
T Consensus 95 Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~G 174 (259)
T PF00290_consen 95 YYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMG 174 (259)
T ss_dssp -HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSS
T ss_pred eccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCC
Confidence 8999999998742 2333333 1 2 45455555544 2 33222 133
Q ss_pred hHHHHH-HHHHHHHHHHHHHHcCCcccccc-cCCCHHHHHHhc
Q 037554 110 LTALYA-SARALVDVLKTLKESGTTRDHLE-KMGTFEEFNQLV 150 (173)
Q Consensus 110 ~~~~~a-a~~a~~~~~~~l~~~g~~~~~~~-~~~~~~e~~~l~ 150 (173)
.+..+. ....+.+.++.+++.-+..-..+ +.-+.+++..+.
T Consensus 175 vTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGFGI~~~e~~~~~~ 217 (259)
T PF00290_consen 175 VTGSRTELPDELKEFIKRIKKHTDLPVAVGFGISTPEQAKKLA 217 (259)
T ss_dssp SSSTTSSCHHHHHHHHHHHHHTTSS-EEEESSS-SHHHHHHHH
T ss_pred CCCCcccchHHHHHHHHHHHhhcCcceEEecCCCCHHHHHHHH
Confidence 333322 23456677777776653221111 223555665554
No 303
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=38.41 E-value=1e+02 Score=27.43 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=14.7
Q ss_pred HHHHHHHHHhCceEEEecc
Q 037554 10 QRTVKDLVAAGAAGCFLED 28 (173)
Q Consensus 10 ~rtv~~~~~aGvagi~iED 28 (173)
.+.++.+.++||.||.+-=
T Consensus 235 ~~dA~~a~~~Gvd~I~Vsn 253 (367)
T PLN02493 235 GEDARIAIQAGAAGIIVSN 253 (367)
T ss_pred HHHHHHHHHcCCCEEEECC
Confidence 3567788999999997654
No 304
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=38.35 E-value=1.7e+02 Score=26.90 Aligned_cols=87 Identities=11% Similarity=0.046 Sum_probs=54.0
Q ss_pred HHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcC--CCCEEE---------ecCCcccccCCC
Q 037554 11 RTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIG--DSDFVL---------ARADASFVEAPR 79 (173)
Q Consensus 11 rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~--~~d~~I---------AGAD~ifv~g~~ 79 (173)
..++++.++|+.-|+|-++.. +.+++...++.+++... +..|+| .|||+|=+. ..
T Consensus 221 ~~ve~aL~aGv~~VQLReK~l-------------s~~el~~la~~l~~l~~~~gv~LiIND~~dlAl~~gAdGVHLG-Qe 286 (437)
T PRK12290 221 EWIERLLPLGINTVQLRIKDP-------------QQADLEQQIIRAIALGREYNAQVFINDYWQLAIKHQAYGVHLG-QE 286 (437)
T ss_pred HHHHHHHhCCCCEEEEeCCCC-------------CHHHHHHHHHHHHHHHHHhCCEEEEECHHHHHHHcCCCEEEcC-hH
Confidence 358899999999999988753 23444444444433321 466777 799999763 23
Q ss_pred C--HHHHhhhh------cCCCCCHHHH---HhCCccEEEechH
Q 037554 80 N--DNEANWVW------GHTLHTPEEL---KAMGFHLTVHPLT 111 (173)
Q Consensus 80 ~--~e~i~~i~------g~p~~~~~eL---~~lGv~~v~~~~~ 111 (173)
| ..+.+++- |....+.+|+ .++|.+.+.+|+.
T Consensus 287 DL~~~~aR~ilg~~~iIGvStHs~eEl~~A~~~gaDYI~lGPI 329 (437)
T PRK12290 287 DLEEANLAQLTDAGIRLGLSTHGYYELLRIVQIQPSYIALGHI 329 (437)
T ss_pred HcchhhhhhhcCCCCEEEEecCCHHHHHHHhhcCCCEEEECCc
Confidence 2 34455551 3233455554 4578999988753
No 305
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=38.18 E-value=39 Score=29.66 Aligned_cols=75 Identities=8% Similarity=-0.073 Sum_probs=45.0
Q ss_pred HHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcC--CCCEEE--------------------
Q 037554 10 QRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIG--DSDFVL-------------------- 67 (173)
Q Consensus 10 ~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~--~~d~~I-------------------- 67 (173)
.+.++...++|+..|+|-..+.+- |...+-=.+.++..+++..+++... +..+.+
T Consensus 75 ~~di~~a~~~g~~~i~i~~~~Sd~---~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~ 151 (365)
T TIGR02660 75 DADIEAAARCGVDAVHISIPVSDL---QIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVA 151 (365)
T ss_pred HHHHHHHHcCCcCEEEEEEccCHH---HHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHH
Confidence 345677888999999999877642 1111111356777777765554332 222222
Q ss_pred --ecCCccccc---CCCCHHHHhhh
Q 037554 68 --ARADASFVE---APRNDNEANWV 87 (173)
Q Consensus 68 --AGAD~ifv~---g~~~~e~i~~i 87 (173)
+|||.|.++ |.-+++++.++
T Consensus 152 ~~~Ga~~i~l~DT~G~~~P~~v~~l 176 (365)
T TIGR02660 152 AEAGADRFRFADTVGILDPFSTYEL 176 (365)
T ss_pred HHcCcCEEEEcccCCCCCHHHHHHH
Confidence 899988763 34577776655
No 306
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=38.14 E-value=1.9e+02 Score=25.35 Aligned_cols=92 Identities=21% Similarity=0.216 Sum_probs=57.8
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE-------------ecCC
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL-------------ARAD 71 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I-------------AGAD 71 (173)
++..+.+.++.+.+.|+.-|+|--...| ...+++.+++-|+.+++.-....+=+ ||+|
T Consensus 104 s~eEI~~~a~~~~~~Gv~~i~lvgGe~p---------~~~~~e~l~eii~~Ik~~~p~i~Iei~~lt~e~~~~Lk~aGv~ 174 (366)
T TIGR02351 104 NEEEIEREIEAIKKSGFKEILLVTGESE---------KAAGVEYIAEAIKLAREYFSSLAIEVQPLNEEEYKKLVEAGLD 174 (366)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeeCCCC---------CCCCHHHHHHHHHHHHHhCCccccccccCCHHHHHHHHHcCCC
Confidence 4577888999999999999998743322 23566777777777765421111111 8888
Q ss_pred cccccCCC--CHHHHhhhh--c---CC---CCCHHHHHhCCccEE
Q 037554 72 ASFVEAPR--NDNEANWVW--G---HT---LHTPEELKAMGFHLT 106 (173)
Q Consensus 72 ~ifv~g~~--~~e~i~~i~--g---~p---~~~~~eL~~lGv~~v 106 (173)
.+.+ ++. +++....+. | +. +-+++.+.++|++.|
T Consensus 175 r~~i-~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v 218 (366)
T TIGR02351 175 GVTV-YQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKI 218 (366)
T ss_pred EEEE-EeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCee
Confidence 7665 343 355555553 2 11 246788889998753
No 307
>PRK15447 putative protease; Provisional
Probab=38.02 E-value=1.6e+02 Score=25.17 Aligned_cols=44 Identities=7% Similarity=0.046 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHH
Q 037554 8 NVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARD 58 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~ 58 (173)
++......+.+.||.+|-+--+.+++|-. .+.++..+-|+-+.+
T Consensus 16 ~~~~~~~~~~~~gaDaVY~g~~~~~~R~~-------f~~~~l~e~v~~~~~ 59 (301)
T PRK15447 16 TVRDFYQRAADSPVDIVYLGETVCSKRRE-------LKVGDWLELAERLAA 59 (301)
T ss_pred CHHHHHHHHHcCCCCEEEECCccCCCccC-------CCHHHHHHHHHHHHH
Confidence 45555566778899999999877776632 345555555555444
No 308
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=37.80 E-value=1.1e+02 Score=25.83 Aligned_cols=52 Identities=25% Similarity=0.249 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHh
Q 037554 7 LNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDA 59 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a 59 (173)
..+....+.-..+||.|+.||=...|.+.. ..+..-++++++..-++.++..
T Consensus 211 ~~v~~~~~aAva~Ga~Gl~iE~H~~pd~a~-~D~~~sl~p~~l~~l~~~i~~~ 262 (266)
T PRK13398 211 ELVIPMAKAAIAAGADGLMIEVHPEPEKAL-SDARQTLNFEEMKELVDELKPM 262 (266)
T ss_pred hhHHHHHHHHHHcCCCEEEEeccCCccccC-CchhhcCCHHHHHHHHHHHHHH
Confidence 456777888899999999999766555543 3455667777776666655543
No 309
>PRK07695 transcriptional regulator TenI; Provisional
Probab=37.79 E-value=2e+02 Score=22.57 Aligned_cols=89 Identities=9% Similarity=0.033 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcC-CCCEEE---------ecCCcccccC
Q 037554 8 NVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIG-DSDFVL---------ARADASFVEA 77 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~-~~d~~I---------AGAD~ifv~g 77 (173)
.....+. ..++|+..|+|-|.. .|.++....++++++.-. ...++| .|+|++.++.
T Consensus 16 ~~~~~~~-~~~~g~~~iqlR~k~-------------~~~~~~~~~~~~l~~~~~~~~~liin~~~~la~~~~~~gvHl~~ 81 (201)
T PRK07695 16 ELVAVAM-QIHSEVDYIHIRERE-------------KSAKELYEGVESLLKKGVPASKLIINDRVDIALLLNIHRVQLGY 81 (201)
T ss_pred hHHHHHH-HHhCCCCEEEEcCCC-------------CCHHHHHHHHHHHHHhCCCCCeEEEECHHHHHHHcCCCEEEeCc
Confidence 3444444 789999999999865 245666666666654422 233666 8999998865
Q ss_pred CC-CHHHHhhh--h---cCCCCCH---HHHHhCCccEEEech
Q 037554 78 PR-NDNEANWV--W---GHTLHTP---EELKAMGFHLTVHPL 110 (173)
Q Consensus 78 ~~-~~e~i~~i--~---g~p~~~~---~eL~~lGv~~v~~~~ 110 (173)
-. ..+++++. . |....+. .++.++|++.+.+|+
T Consensus 82 ~~~~~~~~r~~~~~~~ig~s~~s~e~a~~a~~~Gadyi~~g~ 123 (201)
T PRK07695 82 RSFSVRSVREKFPYLHVGYSVHSLEEAIQAEKNGADYVVYGH 123 (201)
T ss_pred ccCCHHHHHHhCCCCEEEEeCCCHHHHHHHHHcCCCEEEECC
Confidence 31 23555543 1 3112344 456788999998764
No 310
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=37.73 E-value=18 Score=31.63 Aligned_cols=20 Identities=25% Similarity=0.041 Sum_probs=12.1
Q ss_pred ecCCcccc-cCCCCHHHHhhh
Q 037554 68 ARADASFV-EAPRNDNEANWV 87 (173)
Q Consensus 68 AGAD~ifv-~g~~~~e~i~~i 87 (173)
-|||+|+| |++.=.+-++++
T Consensus 245 EGAD~lMVKPal~YLDIi~~v 265 (330)
T COG0113 245 EGADILMVKPALPYLDIIRRV 265 (330)
T ss_pred cCCcEEEEcCCchHHHHHHHH
Confidence 57777776 554445555555
No 311
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=37.72 E-value=1.4e+02 Score=26.11 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHhCceEEEe
Q 037554 6 ALNVQRTVKDLVAAGAAGCFL 26 (173)
Q Consensus 6 ~~~v~rtv~~~~~aGvagi~i 26 (173)
...+.+.++++.+.|+.+|-|
T Consensus 50 ~d~l~~~~~~~~~~Gi~~v~L 70 (314)
T cd00384 50 VDSLVEEAEELADLGIRAVIL 70 (314)
T ss_pred HHHHHHHHHHHHHCCCCEEEE
Confidence 356778899999999999876
No 312
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=37.64 E-value=34 Score=28.42 Aligned_cols=52 Identities=29% Similarity=0.305 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCC-CCEEEecCCcccccCCCCHHHHhhhhcCCCCCHHHHHhCCccEEEechHHHHH
Q 037554 47 EEHAAKIASARDAIGD-SDFVLARADASFVEAPRNDNEANWVWGHTLHTPEELKAMGFHLTVHPLTALYA 115 (173)
Q Consensus 47 ee~~~kI~Aa~~a~~~-~d~~IAGAD~ifv~g~~~~e~i~~i~g~p~~~~~eL~~lGv~~v~~~~~~~~a 115 (173)
+++++||+.+++.... .++.| -|.| |.-.-++.++.+.|.+.+..|+..+..
T Consensus 151 ~~~l~Ki~~lr~~~~~~~~~~I------eVDG-----------GI~~~t~~~~~~AGad~~VaGSalF~~ 203 (220)
T COG0036 151 PEVLEKIRELRAMIDERLDILI------EVDG-----------GINLETIKQLAAAGADVFVAGSALFGA 203 (220)
T ss_pred HHHHHHHHHHHHHhcccCCeEE------EEeC-----------CcCHHHHHHHHHcCCCEEEEEEEEeCC
Confidence 4788999998887642 14443 3343 122235566666777766666655544
No 313
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=37.58 E-value=2.2e+02 Score=27.57 Aligned_cols=92 Identities=16% Similarity=0.116 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE---------ecCCcccccCC
Q 037554 8 NVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL---------ARADASFVEAP 78 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I---------AGAD~ifv~g~ 78 (173)
+....+++..++|+..|+|-++..+ .. .....+.+|++..+.. +..|+| +|+| |=++.-
T Consensus 20 ~~~~~l~~~l~~g~~~iqlR~K~~~-------~~---~~~~~a~~l~~l~~~~-~~~liind~~~la~~~~~d-VHlg~~ 87 (755)
T PRK09517 20 KVAGIVDSAISGGVSVVQLRDKNAG-------VE---DVRAAAKELKELCDAR-GVALVVNDRLDVAVELGLH-VHIGQG 87 (755)
T ss_pred cHHHHHHHHHhcCCCEEEEeCCCCC-------HH---HHHHHHHHHHHHHHHh-CCeEEEeChHHHHHHcCCC-eecCCC
Confidence 4667888999999999999886532 11 2234455666555443 345666 8999 544321
Q ss_pred -CCHHHHhhhh------cCCCCCHHHHHh-------C---CccEEEechH
Q 037554 79 -RNDNEANWVW------GHTLHTPEELKA-------M---GFHLTVHPLT 111 (173)
Q Consensus 79 -~~~e~i~~i~------g~p~~~~~eL~~-------l---Gv~~v~~~~~ 111 (173)
-+.+..+++- |....+.+|+.. + |++.+.+|+.
T Consensus 88 dl~~~~~r~~~~~~~~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~Gpv 137 (755)
T PRK09517 88 DTPYTQARRLLPAHLELGLTIETLDQLEAVIAQCAETGVALPDVIGIGPV 137 (755)
T ss_pred cCCHHHHHHhcCCCCEEEEeCCCHHHHHHHHhhhccCCCCCCCEEEECCc
Confidence 1346666661 334567776642 2 4999999864
No 314
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=37.58 E-value=1.7e+02 Score=24.15 Aligned_cols=91 Identities=14% Similarity=0.028 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE---------------ecC
Q 037554 6 ALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL---------------ARA 70 (173)
Q Consensus 6 ~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I---------------AGA 70 (173)
+..+.+.++.+.+.|+-.++|-+..++ .......+.+..|....... +..+.+ ||.
T Consensus 64 ~eei~~~~~~~~~~g~~~~~l~~~g~~--------~~~~~~~~~~~~i~~~~~~~-~i~~~~~~g~~~~e~l~~Lk~aG~ 134 (296)
T TIGR00433 64 VDEVLEEARKAKAAGATRFCLVASGRG--------PKDREFMEYVEAMVQIVEEM-GLKTCATLGLLDPEQAKRLKDAGL 134 (296)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEecCC--------CChHHHHHHHHHHHHHHHhC-CCeEEecCCCCCHHHHHHHHHcCC
Confidence 456777777778889999988775432 01112245555555443321 222222 788
Q ss_pred CcccccCCCCHHHHhhhh-c-CC---CCCHHHHHhCCccE
Q 037554 71 DASFVEAPRNDNEANWVW-G-HT---LHTPEELKAMGFHL 105 (173)
Q Consensus 71 D~ifv~g~~~~e~i~~i~-g-~p---~~~~~eL~~lGv~~ 105 (173)
|.+.+.--.+++...++. + +. .-.++.+++.|++.
T Consensus 135 ~~v~i~~E~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v 174 (296)
T TIGR00433 135 DYYNHNLDTSQEFYSNIISTHTYDDRVDTLENAKKAGLKV 174 (296)
T ss_pred CEEEEcccCCHHHHhhccCCCCHHHHHHHHHHHHHcCCEE
Confidence 887653213444454443 2 11 23578888999975
No 315
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=37.44 E-value=93 Score=27.07 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhCceEEEeccCC
Q 037554 8 NVQRTVKDLVAAGAAGCFLEDQS 30 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~iEDq~ 30 (173)
++...++.++++|+.||.+-...
T Consensus 225 ~i~~ia~~~~~~GadGi~l~NT~ 247 (335)
T TIGR01036 225 DLEDIADSLVELGIDGVIATNTT 247 (335)
T ss_pred HHHHHHHHHHHhCCcEEEEECCC
Confidence 68888899999999999987754
No 316
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=37.42 E-value=1.4e+02 Score=24.53 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhCceEEEeccC
Q 037554 9 VQRTVKDLVAAGAAGCFLEDQ 29 (173)
Q Consensus 9 v~rtv~~~~~aGvagi~iEDq 29 (173)
+.+.++.+.++|+.||.|=|-
T Consensus 93 ~~~fi~~~~~aG~~giiipDl 113 (242)
T cd04724 93 LERFLRDAKEAGVDGLIIPDL 113 (242)
T ss_pred HHHHHHHHHHCCCcEEEECCC
Confidence 467899999999999999773
No 317
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=37.22 E-value=71 Score=26.59 Aligned_cols=88 Identities=19% Similarity=0.216 Sum_probs=55.6
Q ss_pred CCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEEecCCcccccCCCCHHHHhhh---h--c-------------CC-CCCH
Q 037554 35 CGHMHGKQIIPAEEHAAKIASARDAIGDSDFVLARADASFVEAPRNDNEANWV---W--G-------------HT-LHTP 95 (173)
Q Consensus 35 cg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~IAGAD~ifv~g~~~~e~i~~i---~--g-------------~p-~~~~ 95 (173)
|--.++.+|.+.+-+..--+||.. +||-+|=++|+++...++.. . | +| +-++
T Consensus 21 CQal~~~pl~~~~iv~~mA~Aa~~---------gGAvgiR~~gv~dIkai~~~v~vPIIGIiKrd~~~s~v~ITptlkeV 91 (229)
T COG3010 21 CQALPGEPLDSPEIVAAMALAAEQ---------GGAVGIRIEGVEDIKAIRAVVDVPIIGIIKRDYPDSPVRITPTLKEV 91 (229)
T ss_pred eecCCCCCCcchhHHHHHHHHHHh---------CCcceEeecchhhHHHHHhhCCCCeEEEEecCCCCCCceecccHHHH
Confidence 444567788888555544344332 79999999999888888877 0 1 22 2357
Q ss_pred HHHHhCCccEEEechHHHHHHHH-HHHHHHHHHHHcCC
Q 037554 96 EELKAMGFHLTVHPLTALYASAR-ALVDVLKTLKESGT 132 (173)
Q Consensus 96 ~eL~~lGv~~v~~~~~~~~aa~~-a~~~~~~~l~~~g~ 132 (173)
++|.+.|+..|-+-.+. |.=.. .+.+..+..+..|.
T Consensus 92 d~L~~~Ga~IIA~DaT~-R~RP~~~~~~~i~~~k~~~~ 128 (229)
T COG3010 92 DALAEAGADIIAFDATD-RPRPDGDLEELIARIKYPGQ 128 (229)
T ss_pred HHHHHCCCcEEEeeccc-CCCCcchHHHHHHHhhcCCc
Confidence 99999999999886443 22222 44444454444443
No 318
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=37.14 E-value=1.1e+02 Score=27.69 Aligned_cols=100 Identities=19% Similarity=0.221 Sum_probs=53.5
Q ss_pred HHHHHHHHhC---------------ceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc---C--CCCE-EE--
Q 037554 11 RTVKDLVAAG---------------AAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI---G--DSDF-VL-- 67 (173)
Q Consensus 11 rtv~~~~~aG---------------vagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~---~--~~d~-~I-- 67 (173)
+.++++.++| +..|+.| .-.. ||..+.++. ....-|...++.. . ..++ +|
T Consensus 153 ~~v~~L~~~G~it~~eA~~A~~~g~aD~Ivvq-~EAG---GH~g~~~~~---~Llp~v~~l~d~v~~~~~~~~~ipViAA 225 (418)
T cd04742 153 RILKKLLAEGKITEEQAELARRVPVADDITVE-ADSG---GHTDNRPLS---VLLPTIIRLRDELAARYGYRRPIRVGAA 225 (418)
T ss_pred HHHHHHHHcCCCCHHHHHHHHhCCCCCEEEEc-ccCC---CCCCCccHH---hHHHHHHHHHHHHhhccccCCCceEEEE
Confidence 4556666666 7999998 3322 687543333 3344444444332 1 1123 33
Q ss_pred --------------ecCCcccccCC-------CCHHHHhhh--h-c---CCCCCHHHHHhCCccEEEechHHHHHHH
Q 037554 68 --------------ARADASFVEAP-------RNDNEANWV--W-G---HTLHTPEELKAMGFHLTVHPLTALYASA 117 (173)
Q Consensus 68 --------------AGAD~ifv~g~-------~~~e~i~~i--~-g---~p~~~~~eL~~lGv~~v~~~~~~~~aa~ 117 (173)
.|||.|.+-.. ...+..+.. . + +-..+..|+.++|++.-.+-...++++-
T Consensus 226 GGI~tg~~vaAA~alGAd~V~~GT~flat~Ea~~s~~~K~~L~~a~~~DT~~tp~~dmfe~G~~vqvlk~g~~f~~r 302 (418)
T cd04742 226 GGIGTPEAAAAAFALGADFIVTGSINQCTVEAGTSDAVKDLLQKAGVQDTAYAPAADMFELGAKVQVLKRGTLFPAR 302 (418)
T ss_pred CCCCCHHHHHHHHHcCCcEEeeccHHHhCccccCCHHHHHHHHhCCCCCeEEecccccccCCceehhhhhcccchHH
Confidence 89999887331 111223332 1 1 2234456788899887776666655543
No 319
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=37.04 E-value=2.7e+02 Score=23.86 Aligned_cols=31 Identities=16% Similarity=0.097 Sum_probs=25.2
Q ss_pred HHHHHhCCccEEEechHHHHHHHHHHHHHHH
Q 037554 95 PEELKAMGFHLTVHPLTALYASARALVDVLK 125 (173)
Q Consensus 95 ~~eL~~lGv~~v~~~~~~~~aa~~a~~~~~~ 125 (173)
+....++|++-|-+++-+..+.+.++++.+.
T Consensus 219 ~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~ 249 (285)
T PRK07709 219 IEKAISLGTSKINVNTENQIEFTKAVREVLN 249 (285)
T ss_pred HHHHHHcCCeEEEeChHHHHHHHHHHHHHHH
Confidence 4555679999999999998888888877764
No 320
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=37.01 E-value=1.2e+02 Score=28.12 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhCceEEEec
Q 037554 7 LNVQRTVKDLVAAGAAGCFLE 27 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iE 27 (173)
.+....++.|.++|+..|.|.
T Consensus 241 ~~~~~ra~~Lv~aGvd~i~vd 261 (502)
T PRK07107 241 RDYAERVPALVEAGADVLCID 261 (502)
T ss_pred hhHHHHHHHHHHhCCCeEeec
Confidence 456788899999999999985
No 321
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=36.96 E-value=53 Score=30.04 Aligned_cols=69 Identities=13% Similarity=0.138 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhCceEEEe-ccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc-CCCCEEE----------ecCCccc
Q 037554 7 LNVQRTVKDLVAAGAAGCFL-EDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI-GDSDFVL----------ARADASF 74 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~i-EDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~-~~~d~~I----------AGAD~if 74 (173)
.+.....+.| +.||++|.+ -|.. ++.| |. +...+++.++..- -..||+| +|||+|.
T Consensus 70 ~d~~~~a~~y-~~gA~aiSVlTe~~------~F~G----s~-~~l~~vr~~v~~PvLrKDFiid~~QI~ea~~~GADavL 137 (454)
T PRK09427 70 FDPAEIARVY-KHYASAISVLTDEK------YFQG----SF-DFLPIVRAIVTQPILCKDFIIDPYQIYLARYYGADAIL 137 (454)
T ss_pred CCHHHHHHHH-HcCCeEEEEecCcC------cCCC----CH-HHHHHHHHhCCCCEEeccccCCHHHHHHHHHcCCCchh
Confidence 3566777888 889999875 2322 2223 22 3444555443311 1368888 8999988
Q ss_pred cc-CCCCHHHHhhh
Q 037554 75 VE-APRNDNEANWV 87 (173)
Q Consensus 75 v~-g~~~~e~i~~i 87 (173)
.. ++-+.+++..+
T Consensus 138 LI~~~L~~~~l~~l 151 (454)
T PRK09427 138 LMLSVLDDEQYRQL 151 (454)
T ss_pred HHHHhCCHHHHHHH
Confidence 53 33455566655
No 322
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=36.87 E-value=66 Score=26.73 Aligned_cols=42 Identities=26% Similarity=0.300 Sum_probs=26.2
Q ss_pred cCHHHHHHHHHHHHHhcCCCCEEEecCCcccccCC--CCHHHHhhhh---cCCCCC
Q 037554 44 IPAEEHAAKIASARDAIGDSDFVLARADASFVEAP--RNDNEANWVW---GHTLHT 94 (173)
Q Consensus 44 ~~~ee~~~kI~Aa~~a~~~~d~~IAGAD~ifv~g~--~~~e~i~~i~---g~p~~~ 94 (173)
++++...+-++.+ . . .+||.||+.+. ++.+-+.+++ |.|.+|
T Consensus 165 i~p~~i~~~~~~~---~-~-----~~aDAifisCTnLrt~~vi~~lE~~lGkPVls 211 (239)
T TIGR02990 165 ISPDCIVEAALAA---F-D-----PDADALFLSCTALRAATCAQRIEQAIGKPVVT 211 (239)
T ss_pred cCHHHHHHHHHHh---c-C-----CCCCEEEEeCCCchhHHHHHHHHHHHCCCEEE
Confidence 6777776544433 1 1 57999999774 5667776664 566443
No 323
>PF13541 ChlI: Subunit ChlI of Mg-chelatase
Probab=36.61 E-value=82 Score=23.46 Aligned_cols=67 Identities=24% Similarity=0.233 Sum_probs=42.1
Q ss_pred cCHHHHHHHHHHHHHhcC----CCCEEE--ecCCcccccCCCCHHHHhhh-----------------h----c--CC---
Q 037554 44 IPAEEHAAKIASARDAIG----DSDFVL--ARADASFVEAPRNDNEANWV-----------------W----G--HT--- 91 (173)
Q Consensus 44 ~~~ee~~~kI~Aa~~a~~----~~d~~I--AGAD~ifv~g~~~~e~i~~i-----------------~----g--~p--- 91 (173)
.++.|..+||++|..... +.|++| +++|.=.-...-|..-.-.+ | | .|
T Consensus 20 ~av~esr~Rv~~al~~~g~~~p~~~i~VNlap~~l~k~g~~~DLaIA~ailsa~~~~~~~~~~~~~GEl~L~G~ir~v~~ 99 (121)
T PF13541_consen 20 TAVKESRERVRSALKNSGFPFPNQDITVNLAPADLKKEGPAFDLAIAIAILSAFGQIPIPEDTVFIGELGLDGEIRPVPG 99 (121)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcceeeeEEEeCCEEEeeeeehHHHHHHHHHhCCCcccCCCEEEEEEecCCccEEecCc
Confidence 456888899999998853 367777 66664332222233333222 1 2 22
Q ss_pred -CCCHHHHHhCCccEEEech
Q 037554 92 -LHTPEELKAMGFHLTVHPL 110 (173)
Q Consensus 92 -~~~~~eL~~lGv~~v~~~~ 110 (173)
..-+.+.+++|+++++.|.
T Consensus 100 ~~~~~~~A~~~G~~~vivP~ 119 (121)
T PF13541_consen 100 ILPRIIEAKKLGFKRVIVPK 119 (121)
T ss_pred HHHHHHHHHHCCCCEEEeCC
Confidence 2356789999999999873
No 324
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=36.08 E-value=1.3e+02 Score=26.49 Aligned_cols=20 Identities=20% Similarity=0.028 Sum_probs=14.5
Q ss_pred ecCCcccc-cCCCCHHHHhhh
Q 037554 68 ARADASFV-EAPRNDNEANWV 87 (173)
Q Consensus 68 AGAD~ifv-~g~~~~e~i~~i 87 (173)
-|||+++| |++.-.+-|+.+
T Consensus 237 EGAD~lMVKPal~YLDIi~~~ 257 (320)
T cd04823 237 EGADMVMVKPGMPYLDIIRRV 257 (320)
T ss_pred hCCCEEEEcCCchHHHHHHHH
Confidence 58888887 666666667666
No 325
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=36.06 E-value=1.2e+02 Score=27.48 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhCceEEEeccCCC
Q 037554 8 NVQRTVKDLVAAGAAGCFLEDQSW 31 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~iEDq~~ 31 (173)
+..+.++.++++||.-|.| |.+.
T Consensus 153 ~~~~~v~~lv~aGvDvI~i-D~a~ 175 (404)
T PRK06843 153 DTIERVEELVKAHVDILVI-DSAH 175 (404)
T ss_pred HHHHHHHHHHhcCCCEEEE-ECCC
Confidence 4568899999999999999 6553
No 326
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=36.00 E-value=25 Score=28.49 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHhcCCCCEEEecCCcccccCCC-CHHHHhhhh---------c----CCCCCHHHHHhCCccEEEech
Q 037554 45 PAEEHAAKIASARDAIGDSDFVLARADASFVEAPR-NDNEANWVW---------G----HTLHTPEELKAMGFHLTVHPL 110 (173)
Q Consensus 45 ~~ee~~~kI~Aa~~a~~~~d~~IAGAD~ifv~g~~-~~e~i~~i~---------g----~p~~~~~eL~~lGv~~v~~~~ 110 (173)
..++.+.++..+-.-.-.-|++ |+.|+|.+. .++.++.+. . .|..-++++.++|..+|+++.
T Consensus 13 ~l~~~i~~l~~~g~d~lHiDiM----Dg~fvpn~~~g~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~~H~ 88 (201)
T PF00834_consen 13 NLEEEIKRLEEAGADWLHIDIM----DGHFVPNLTFGPDIIKAIRKITDLPLDVHLMVENPERYIEEFAEAGADYITFHA 88 (201)
T ss_dssp GHHHHHHHHHHTT-SEEEEEEE----BSSSSSSB-B-HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHHT-SEEEEEG
T ss_pred HHHHHHHHHHHcCCCEEEEeec----ccccCCcccCCHHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhcCCCEEEEcc
Confidence 3455555554321000124555 899998874 455565551 1 455667999999999999997
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccc
Q 037554 111 TALYASARALVDVLKTLKESGTTRD 135 (173)
Q Consensus 111 ~~~~aa~~a~~~~~~~l~~~g~~~~ 135 (173)
- +..-..+.++.+++.|.-.+
T Consensus 89 E----~~~~~~~~i~~ik~~g~k~G 109 (201)
T PF00834_consen 89 E----ATEDPKETIKYIKEAGIKAG 109 (201)
T ss_dssp G----GTTTHHHHHHHHHHTTSEEE
T ss_pred c----chhCHHHHHHHHHHhCCCEE
Confidence 6 33445567888888886544
No 327
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=35.94 E-value=1.1e+02 Score=26.94 Aligned_cols=20 Identities=15% Similarity=0.039 Sum_probs=13.3
Q ss_pred ecCCcccc-cCCCCHHHHhhh
Q 037554 68 ARADASFV-EAPRNDNEANWV 87 (173)
Q Consensus 68 AGAD~ifv-~g~~~~e~i~~i 87 (173)
-|||+|+| |++.-.+-|+++
T Consensus 241 EGAD~lMVKPal~YLDIi~~~ 261 (322)
T PRK13384 241 EGADILMVKPGTPYLDVLSRL 261 (322)
T ss_pred hCCCEEEEcCCchHHHHHHHH
Confidence 57787777 565556666665
No 328
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=35.06 E-value=43 Score=29.83 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=27.1
Q ss_pred CcccCHHHHHHHHHHHHHhcCCCCEEE-----------------ecCCcccccCC
Q 037554 41 KQIIPAEEHAAKIASARDAIGDSDFVL-----------------ARADASFVEAP 78 (173)
Q Consensus 41 ~~l~~~ee~~~kI~Aa~~a~~~~d~~I-----------------AGAD~ifv~g~ 78 (173)
+.+.++|++..+|.-.++.-....+-| +|+|.|-|.|-
T Consensus 182 ~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~ 236 (368)
T PF01645_consen 182 HDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGA 236 (368)
T ss_dssp TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-T
T ss_pred CCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCC
Confidence 568899999999999998864444444 89999999874
No 329
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=34.94 E-value=1.8e+02 Score=22.49 Aligned_cols=10 Identities=20% Similarity=0.149 Sum_probs=5.4
Q ss_pred ecCCcccccC
Q 037554 68 ARADASFVEA 77 (173)
Q Consensus 68 AGAD~ifv~g 77 (173)
.|.|.||-|+
T Consensus 114 ~G~~~if~pg 123 (143)
T COG2185 114 MGVDRIFGPG 123 (143)
T ss_pred hCcceeeCCC
Confidence 4555555554
No 330
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=34.82 E-value=51 Score=29.12 Aligned_cols=75 Identities=13% Similarity=0.034 Sum_probs=47.0
Q ss_pred HHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCC--CCEEE--------------------
Q 037554 10 QRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGD--SDFVL-------------------- 67 (173)
Q Consensus 10 ~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~--~d~~I-------------------- 67 (173)
.+.++...++|+..|+|-..+.+- |...+-=.+.++..+++..+++...+ ..+.+
T Consensus 78 ~~di~~a~~~g~~~i~i~~~~Sd~---h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~ 154 (378)
T PRK11858 78 KSDIDASIDCGVDAVHIFIATSDI---HIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAA 154 (378)
T ss_pred HHHHHHHHhCCcCEEEEEEcCCHH---HHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHH
Confidence 455778888999999998877652 11111124678888877766655432 22222
Q ss_pred --ecCCccccc---CCCCHHHHhhh
Q 037554 68 --ARADASFVE---APRNDNEANWV 87 (173)
Q Consensus 68 --AGAD~ifv~---g~~~~e~i~~i 87 (173)
+|||.|.+. |.-+++++.++
T Consensus 155 ~~~Ga~~I~l~DT~G~~~P~~v~~l 179 (378)
T PRK11858 155 EEAGADRVRFCDTVGILDPFTMYEL 179 (378)
T ss_pred HhCCCCEEEEeccCCCCCHHHHHHH
Confidence 788887753 34567776655
No 331
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=34.74 E-value=1e+02 Score=24.53 Aligned_cols=93 Identities=14% Similarity=0.057 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE---------------ecCC
Q 037554 7 LNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL---------------ARAD 71 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I---------------AGAD 71 (173)
.+....++.|.+.|+..++|=|-..- ..++.. --+++.+|+... +..+.+ +|||
T Consensus 29 ~dp~~~a~~~~~~g~d~l~v~dl~~~-~~~~~~------~~~~i~~i~~~~----~~pv~~~GgI~~~e~~~~~~~~Gad 97 (234)
T cd04732 29 DDPVEVAKKWEEAGAKWLHVVDLDGA-KGGEPV------NLELIEEIVKAV----GIPVQVGGGIRSLEDIERLLDLGVS 97 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEEECCCcc-ccCCCC------CHHHHHHHHHhc----CCCEEEeCCcCCHHHHHHHHHcCCC
Confidence 36667888899999999999986531 111111 123454444332 233444 8999
Q ss_pred cccccCC--CCHHHHhhh-h--cC-----C-----------------CC----CHHHHHhCCccEEEech
Q 037554 72 ASFVEAP--RNDNEANWV-W--GH-----T-----------------LH----TPEELKAMGFHLTVHPL 110 (173)
Q Consensus 72 ~ifv~g~--~~~e~i~~i-~--g~-----p-----------------~~----~~~eL~~lGv~~v~~~~ 110 (173)
.|.+... .+++.++++ . +. + .. -.+.+.+.|++.+++..
T Consensus 98 ~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~ 167 (234)
T cd04732 98 RVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTD 167 (234)
T ss_pred EEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEe
Confidence 9887543 466666655 1 11 0 01 14668888999888863
No 332
>PRK00208 thiG thiazole synthase; Reviewed
Probab=34.04 E-value=1.5e+02 Score=25.19 Aligned_cols=75 Identities=17% Similarity=0.145 Sum_probs=37.2
Q ss_pred HHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEEecCCcccccCCCCHHHHhhhhcC
Q 037554 11 RTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVLARADASFVEAPRNDNEANWVWGH 90 (173)
Q Consensus 11 rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~IAGAD~ifv~g~~~~e~i~~i~g~ 90 (173)
...++++++|+..|--== .|- ..|+.+.. .++++.|+ +. .+.. +|++| |+.+++++
T Consensus 135 ~~ak~l~~~G~~~vmPlg--~pI----Gsg~gi~~-~~~i~~i~---e~-~~vp-VIvea------GI~tpeda------ 190 (250)
T PRK00208 135 VLAKRLEEAGCAAVMPLG--API----GSGLGLLN-PYNLRIII---EQ-ADVP-VIVDA------GIGTPSDA------ 190 (250)
T ss_pred HHHHHHHHcCCCEeCCCC--cCC----CCCCCCCC-HHHHHHHH---Hh-cCCe-EEEeC------CCCCHHHH------
Confidence 355777778888872100 011 12345545 34444443 33 1222 33433 45555544
Q ss_pred CCCCHHHHHhCCccEEEechHHHH
Q 037554 91 TLHTPEELKAMGFHLTVHPLTALY 114 (173)
Q Consensus 91 p~~~~~eL~~lGv~~v~~~~~~~~ 114 (173)
.+.-++|+.-|..++...+
T Consensus 191 -----~~AmelGAdgVlV~SAItk 209 (250)
T PRK00208 191 -----AQAMELGADAVLLNTAIAV 209 (250)
T ss_pred -----HHHHHcCCCEEEEChHhhC
Confidence 3455577777777665554
No 333
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=33.97 E-value=1.4e+02 Score=25.32 Aligned_cols=70 Identities=13% Similarity=0.088 Sum_probs=44.6
Q ss_pred HHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEEecCCcccccCCCCHHHHhhhhc
Q 037554 10 QRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVLARADASFVEAPRNDNEANWVWG 89 (173)
Q Consensus 10 ~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~IAGAD~ifv~g~~~~e~i~~i~g 89 (173)
.+.++.|.++|+..|||=|= .+ + . .+.+++|.... +..+ ..--|+++ +
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL-g~---------~--n-~~~i~~i~~~~----~~~v-------~vGGGIr~-e------- 88 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML-GP---------N--N-DDAAKEALHAY----PGGL-------QVGGGIND-T------- 88 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC-CC---------C--c-HHHHHHHHHhC----CCCE-------EEeCCcCH-H-------
Confidence 67789999999999999996 11 1 1 24444444321 1121 12224443 3
Q ss_pred CCCCCHHHHHhCCccEEEechHHHHH
Q 037554 90 HTLHTPEELKAMGFHLTVHPLTALYA 115 (173)
Q Consensus 90 ~p~~~~~eL~~lGv~~v~~~~~~~~a 115 (173)
+++++-++|+++|+.++.++.-
T Consensus 89 ----~v~~~l~aGa~rVvIGS~av~~ 110 (253)
T TIGR02129 89 ----NAQEWLDEGASHVIVTSWLFTK 110 (253)
T ss_pred ----HHHHHHHcCCCEEEECcHHHhC
Confidence 4578889999999999887653
No 334
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=33.87 E-value=1.3e+02 Score=26.85 Aligned_cols=26 Identities=8% Similarity=0.167 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHhCceEEEeccCCC
Q 037554 6 ALNVQRTVKDLVAAGAAGCFLEDQSW 31 (173)
Q Consensus 6 ~~~v~rtv~~~~~aGvagi~iEDq~~ 31 (173)
..++...++.+.++|+.||.+=....
T Consensus 193 ~t~i~~ia~aa~~~Gadgi~liNT~~ 218 (385)
T PLN02495 193 ITDITQPARVALKSGCEGVAAINTIM 218 (385)
T ss_pred hhhHHHHHHHHHHhCCCEEEEecccC
Confidence 35688888999999999998876543
No 335
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=33.86 E-value=2.6e+02 Score=22.76 Aligned_cols=48 Identities=15% Similarity=0.031 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcC
Q 037554 6 ALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIG 61 (173)
Q Consensus 6 ~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~ 61 (173)
...-..-+++..+.||..|- =+.+ .|++... ..+...+-|++++++..
T Consensus 69 ~~~K~~E~~~Av~~GAdEiD---vv~n--~g~l~~g---~~~~v~~ei~~i~~~~~ 116 (211)
T TIGR00126 69 TDVKLYETKEAIKYGADEVD---MVIN--IGALKDG---NEEVVYDDIRAVVEACA 116 (211)
T ss_pred HHHHHHHHHHHHHcCCCEEE---eecc--hHhhhCC---cHHHHHHHHHHHHHHcC
Confidence 33444556778888988883 3332 1111111 23556666777776654
No 336
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=33.64 E-value=2.4e+02 Score=22.38 Aligned_cols=94 Identities=15% Similarity=0.034 Sum_probs=50.9
Q ss_pred HHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE-------------ecCCcccc--
Q 037554 11 RTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL-------------ARADASFV-- 75 (173)
Q Consensus 11 rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I-------------AGAD~ifv-- 75 (173)
..++...++|+..|.+.-...+ .+.-...++++.+++ +.- +..+++ +|+|.|-+
T Consensus 83 ~~~~~a~~aGad~I~~~~~~~~-------~p~~~~~~~~i~~~~---~~g-~~~iiv~v~t~~ea~~a~~~G~d~i~~~~ 151 (219)
T cd04729 83 EEVDALAAAGADIIALDATDRP-------RPDGETLAELIKRIH---EEY-NCLLMADISTLEEALNAAKLGFDIIGTTL 151 (219)
T ss_pred HHHHHHHHcCCCEEEEeCCCCC-------CCCCcCHHHHHHHHH---HHh-CCeEEEECCCHHHHHHHHHcCCCEEEccC
Confidence 4678888999998777322110 000013344444443 322 233333 89998743
Q ss_pred cCC---------CCHHHHhhhh---cCC---------CCCHHHHHhCCccEEEechHHHHH
Q 037554 76 EAP---------RNDNEANWVW---GHT---------LHTPEELKAMGFHLTVHPLTALYA 115 (173)
Q Consensus 76 ~g~---------~~~e~i~~i~---g~p---------~~~~~eL~~lGv~~v~~~~~~~~a 115 (173)
.|. .+.+.++++. +.| .-+++++.++|++-|..|..++++
T Consensus 152 ~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~~ 212 (219)
T cd04729 152 SGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGADAVVVGSAITRP 212 (219)
T ss_pred ccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhCh
Confidence 221 2234455441 123 135577778899999999877654
No 337
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=33.43 E-value=45 Score=27.30 Aligned_cols=84 Identities=14% Similarity=0.205 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHhcCCCCEEEecCCcccccCCCCHHHHhhhhcCCCCCHHHHHhCCccEEEec-hHHHHHHHHHHHHH
Q 037554 45 PAEEHAAKIASARDAIGDSDFVLARADASFVEAPRNDNEANWVWGHTLHTPEELKAMGFHLTVHP-LTALYASARALVDV 123 (173)
Q Consensus 45 ~~ee~~~kI~Aa~~a~~~~d~~IAGAD~ifv~g~~~~e~i~~i~g~p~~~~~eL~~lGv~~v~~~-~~~~~aa~~a~~~~ 123 (173)
..+...+.|+-.... .|++++--.+.+.........-..+ ..|.-.++.|+.+||+.++.+ ++.+-.-..++.++
T Consensus 22 ~~~~~~~~v~~~l~~---aD~~~~NlE~~v~~~~~~~~~~~~f-~~~~~~~~~L~~~G~d~vslANNH~~D~G~~gl~~T 97 (250)
T PF09587_consen 22 GFDYIFEDVKPLLQS---ADLVVANLETPVTDSGQPASGYPHF-NAPPEILDALKDAGFDVVSLANNHIFDYGEEGLLDT 97 (250)
T ss_pred ChHHHHHHHHHHHhh---CCEEEEEeeecCcCCCCcCCCccee-cCCHHHHHHHHHcCCCEEEecCCCCccccHHHHHHH
Confidence 445556666644433 4666644444342211100000111 123234799999999999998 88888888999999
Q ss_pred HHHHHHcCC
Q 037554 124 LKTLKESGT 132 (173)
Q Consensus 124 ~~~l~~~g~ 132 (173)
++.|.+.|-
T Consensus 98 l~~L~~~gi 106 (250)
T PF09587_consen 98 LEALDKAGI 106 (250)
T ss_pred HHHHHHCCC
Confidence 999988773
No 338
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=33.34 E-value=3e+02 Score=23.38 Aligned_cols=84 Identities=14% Similarity=0.259 Sum_probs=63.7
Q ss_pred HHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE-----------------ecCCccc
Q 037554 12 TVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL-----------------ARADASF 74 (173)
Q Consensus 12 tv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I-----------------AGAD~if 74 (173)
-.-++++-|--|+-|--... .+.-+|.+.+-.-|++..+- ..|.| +++|.+.
T Consensus 47 ~~~el~kkGy~g~llSGGm~--------srg~VPl~kf~d~lK~lke~---~~l~inaHvGfvdE~~~eklk~~~vdvvs 115 (275)
T COG1856 47 RCMELEKKGYEGCLLSGGMD--------SRGKVPLWKFKDELKALKER---TGLLINAHVGFVDESDLEKLKEELVDVVS 115 (275)
T ss_pred HHHHHHhcCceeEEEeCCcC--------CCCCccHHHHHHHHHHHHHh---hCeEEEEEeeeccHHHHHHHHHhcCcEEE
Confidence 34578888999998876543 24468999999999987764 44666 8999999
Q ss_pred ccCCCCHHHHhhhhcCC------CCCHHHHHhCCccEE
Q 037554 75 VEAPRNDNEANWVWGHT------LHTPEELKAMGFHLT 106 (173)
Q Consensus 75 v~g~~~~e~i~~i~g~p------~~~~~eL~~lGv~~v 106 (173)
..-+.|.+.|+++-+.| +-++..|++.|.+.|
T Consensus 116 LDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvv 153 (275)
T COG1856 116 LDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVV 153 (275)
T ss_pred EeecCChHHHHHHHcCCccHHHHHHHHHHHHHcCceec
Confidence 98888999999994211 347788999998864
No 339
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=33.20 E-value=1.7e+02 Score=24.21 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=21.0
Q ss_pred ChHHHHHHHHHHHHhCceEEEec--cCCC
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLE--DQSW 31 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iE--Dq~~ 31 (173)
+..+..+.++++++ |+.-+|+. |..|
T Consensus 13 d~~~l~~el~~l~~-g~d~lH~DiMDG~F 40 (229)
T PRK09722 13 DLLKFKEQIEFLNS-KADYFHIDIMDGHF 40 (229)
T ss_pred CHHHHHHHHHHHHh-CCCEEEEecccCcc
Confidence 56789999999988 99998864 6554
No 340
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=33.08 E-value=1.4e+02 Score=25.13 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhCceEEEeccCC
Q 037554 7 LNVQRTVKDLVAAGAAGCFLEDQS 30 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iEDq~ 30 (173)
..+.+-++.|++.|+.||.||..-
T Consensus 29 e~A~~ea~~l~~~GvDgiiveN~~ 52 (254)
T PF03437_consen 29 ERAVREAEALEEGGVDGIIVENMG 52 (254)
T ss_pred HHHHHHHHHHHHCCCCEEEEecCC
Confidence 345677789999999999999964
No 341
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=33.00 E-value=69 Score=27.86 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEEecCCcccccC
Q 037554 10 QRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVLARADASFVEA 77 (173)
Q Consensus 10 ~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~IAGAD~ifv~g 77 (173)
..+++.|.+.|+--.-|.|.. +...-...|.+|.|||+|+..|
T Consensus 160 ~~~ak~L~~~gI~~~~I~Dsa-------------------------~~~~~~~vd~VivGad~I~~nG 202 (301)
T COG1184 160 RIMAKELRQSGIPVTVIVDSA-------------------------VGAFMSRVDKVLVGADAILANG 202 (301)
T ss_pred HHHHHHHHHcCCceEEEechH-------------------------HHHHHHhCCEEEECccceecCC
Confidence 456666666666666666642 1122223688889999999886
No 342
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=32.95 E-value=1.4e+02 Score=27.46 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhCceEEEeccCC
Q 037554 7 LNVQRTVKDLVAAGAAGCFLEDQS 30 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iEDq~ 30 (173)
.+..+.++.|.++|+..|.| |.+
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~-D~a 246 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVI-DTA 246 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEE-eCC
Confidence 35678899999999999998 655
No 343
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=32.92 E-value=3.1e+02 Score=23.41 Aligned_cols=32 Identities=9% Similarity=-0.043 Sum_probs=25.8
Q ss_pred HHHHHhCCccEEEechHHHHHHHHHHHHHHHH
Q 037554 95 PEELKAMGFHLTVHPLTALYASARALVDVLKT 126 (173)
Q Consensus 95 ~~eL~~lGv~~v~~~~~~~~aa~~a~~~~~~~ 126 (173)
+....++|++-|-+++.+..+.+.++++.+.+
T Consensus 216 ~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~~ 247 (282)
T TIGR01858 216 VRRTIELGICKVNVATELKIAFSGAVKAYFAE 247 (282)
T ss_pred HHHHHHcCCeEEEeCcHHHHHHHHHHHHHHHh
Confidence 44556799999999999999999888887643
No 344
>KOG0538 consensus Glycolate oxidase [Energy production and conversion]
Probab=32.88 E-value=79 Score=27.94 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=13.4
Q ss_pred HHHHHHHhCceEEEecc
Q 037554 12 TVKDLVAAGAAGCFLED 28 (173)
Q Consensus 12 tv~~~~~aGvagi~iED 28 (173)
-++...++|++||.+--
T Consensus 236 DA~~Ave~G~~GIIVSN 252 (363)
T KOG0538|consen 236 DARKAVEAGVAGIIVSN 252 (363)
T ss_pred HHHHHHHhCCceEEEeC
Confidence 35667889999998765
No 345
>PRK06256 biotin synthase; Validated
Probab=32.72 E-value=2.1e+02 Score=24.36 Aligned_cols=93 Identities=13% Similarity=0.077 Sum_probs=53.0
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE---------------ec
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL---------------AR 69 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I---------------AG 69 (173)
++.++.+.++.+.+.|+.-++|-+...+ . ...+.+.+.+-++.+++. .+..+.+ ||
T Consensus 92 s~eeI~~~~~~~~~~g~~~~~l~~~g~~------p--~~~~~~~~~e~i~~i~~~-~~i~~~~~~g~l~~e~l~~LkeaG 162 (336)
T PRK06256 92 DIEELIEAAKEAIEEGAGTFCIVASGRG------P--SGKEVDQVVEAVKAIKEE-TDLEICACLGLLTEEQAERLKEAG 162 (336)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEecCCC------C--CchHHHHHHHHHHHHHhc-CCCcEEecCCcCCHHHHHHHHHhC
Confidence 4678888999999999877777654321 0 111234555555555443 2222222 88
Q ss_pred CCcccccCCC-CHHHHhhhh-c-CC---CCCHHHHHhCCccEEE
Q 037554 70 ADASFVEAPR-NDNEANWVW-G-HT---LHTPEELKAMGFHLTV 107 (173)
Q Consensus 70 AD~ifv~g~~-~~e~i~~i~-g-~p---~~~~~eL~~lGv~~v~ 107 (173)
.|.+.+ ++. +.+...++. + +. .-+++.++++|+...+
T Consensus 163 ~~~v~~-~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~ 205 (336)
T PRK06256 163 VDRYNH-NLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCS 205 (336)
T ss_pred CCEEec-CCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeecc
Confidence 888776 443 344444443 2 11 2466778888886543
No 346
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=32.56 E-value=1.1e+02 Score=25.81 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=15.0
Q ss_pred HHHHHHHHhCceEEEecc
Q 037554 11 RTVKDLVAAGAAGCFLED 28 (173)
Q Consensus 11 rtv~~~~~aGvagi~iED 28 (173)
+.++.++++||.+|.+.-
T Consensus 184 ~~a~~a~~~G~d~I~v~~ 201 (299)
T cd02809 184 EDALRAVDAGADGIVVSN 201 (299)
T ss_pred HHHHHHHHCCCCEEEEcC
Confidence 567888999999998874
No 347
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=32.54 E-value=3.8e+02 Score=24.26 Aligned_cols=64 Identities=17% Similarity=0.210 Sum_probs=42.5
Q ss_pred ecCCcccccCC-----CCHHHHhhh-------h-c------------CCCCCHHHHHhCCccEEEec-------hHHHHH
Q 037554 68 ARADASFVEAP-----RNDNEANWV-------W-G------------HTLHTPEELKAMGFHLTVHP-------LTALYA 115 (173)
Q Consensus 68 AGAD~ifv~g~-----~~~e~i~~i-------~-g------------~p~~~~~eL~~lGv~~v~~~-------~~~~~a 115 (173)
+|||.+.++++ -+.+++.++ | + +|..-.+-+..+|-+.|... +.-..+
T Consensus 287 aGaD~~~~~~~~Gk~~~~~~~~~~~~~~~~~~~~~~k~~~Pv~sGG~~~~~~p~~~~~~G~D~il~~GGgi~gHp~G~~a 366 (407)
T PRK09549 287 AGADFSLFPSPYGSVALEKEEALAIAKELTEDDDPFKRSFPVPSAGIHPGLVPLLIRDFGKDVVINAGGGIHGHPNGAQG 366 (407)
T ss_pred cCCCccccCCCcCCcCCCHHHHHHHHHHHhccccCCCccEEeecCCCChhHHHHHHHHhCCceEEecCCceecCCCCchh
Confidence 99999998775 256666666 1 1 22233567778887766543 333467
Q ss_pred HHHHHHHHHHHHHHcC
Q 037554 116 SARALVDVLKTLKESG 131 (173)
Q Consensus 116 a~~a~~~~~~~l~~~g 131 (173)
-.++++++++...+..
T Consensus 367 Ga~A~rqA~ea~~~g~ 382 (407)
T PRK09549 367 GGKAFRAAIDAVLQGK 382 (407)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 7888999999887443
No 348
>PRK13352 thiamine biosynthesis protein ThiC; Provisional
Probab=32.38 E-value=3e+02 Score=25.16 Aligned_cols=48 Identities=23% Similarity=0.410 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE
Q 037554 7 LNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL 67 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I 67 (173)
....+.+++..++||.-+ ||= | || +|.++...-++-.+....+-.|++
T Consensus 246 ~~lgeL~~RA~e~gVQvM-VEG---P---GH------vPl~~I~~nv~l~K~lc~~APfYv 293 (431)
T PRK13352 246 ITLGELVKRAREAGVQVM-VEG---P---GH------VPLDQIEANVKLQKRLCHGAPFYV 293 (431)
T ss_pred HHHHHHHHHHHHcCCeEE-EEC---C---CC------CCHHHHHHHHHHHHHhhCCCCcee
Confidence 345677889999998654 442 3 33 677887777887777666666776
No 349
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=32.34 E-value=2.3e+02 Score=21.87 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=17.8
Q ss_pred CCHHHHHhCCccEEEechHHHH
Q 037554 93 HTPEELKAMGFHLTVHPLTALY 114 (173)
Q Consensus 93 ~~~~eL~~lGv~~v~~~~~~~~ 114 (173)
-++.++.+.|++.+..|..+++
T Consensus 170 ~~i~~~~~~Gad~vvvGsai~~ 191 (202)
T cd04726 170 DTLPEFKKAGADIVIVGRAITG 191 (202)
T ss_pred HHHHHHHhcCCCEEEEeehhcC
Confidence 3667888899999999987754
No 350
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=32.24 E-value=1e+02 Score=24.90 Aligned_cols=69 Identities=19% Similarity=0.137 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE---------------ecCCc
Q 037554 8 NVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL---------------ARADA 72 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I---------------AGAD~ 72 (173)
+..+.++.|.+.|+..+|+=|...... .. .+....|+..++.. +..|.| +|||.
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~~-------~~---~~~~~~i~~i~~~~-~~~l~v~GGi~~~~~~~~~~~~Ga~~ 101 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAFE-------GE---RKNAEAIEKIIEAV-GVPVQLGGGIRSAEDAASLLDLGVDR 101 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhhc-------CC---cccHHHHHHHHHHc-CCcEEEcCCcCCHHHHHHHHHcCCCE
Confidence 566678888999999999999764211 11 12334444444332 234555 89998
Q ss_pred ccccCC--CCHHHHhhh
Q 037554 73 SFVEAP--RNDNEANWV 87 (173)
Q Consensus 73 ifv~g~--~~~e~i~~i 87 (173)
|.+... .+++.+.++
T Consensus 102 v~iGs~~~~~~~~~~~i 118 (241)
T PRK13585 102 VILGTAAVENPEIVREL 118 (241)
T ss_pred EEEChHHhhChHHHHHH
Confidence 877442 355555555
No 351
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=31.89 E-value=1.8e+02 Score=25.19 Aligned_cols=91 Identities=18% Similarity=0.152 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhCceEEEecc-----------CCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE---ec-CCc
Q 037554 8 NVQRTVKDLVAAGAAGCFLED-----------QSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL---AR-ADA 72 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~iED-----------q~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I---AG-AD~ 72 (173)
...+.+++..++|..||.|-= ...+||.....|.-.-......+-|++++++. ++||.| .+ .|.
T Consensus 138 ~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~v-G~d~~v~iRi~~~D~ 216 (353)
T cd02930 138 DFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAV-GEDFIIIYRLSMLDL 216 (353)
T ss_pred HHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHc-CCCceEEEEeccccc
Confidence 455666778889999999821 02345555554531112334444556666554 456655 33 343
Q ss_pred ccccCCCCHHHHhhhhcCCCCCHHHHHhCCccEEEe
Q 037554 73 SFVEAPRNDNEANWVWGHTLHTPEELKAMGFHLTVH 108 (173)
Q Consensus 73 ifv~g~~~~e~i~~i~g~p~~~~~eL~~lGv~~v~~ 108 (173)
. ++-.+.++..++ .+.|.++|++.+.+
T Consensus 217 -~-~~g~~~~e~~~i-------~~~Le~~G~d~i~v 243 (353)
T cd02930 217 -V-EGGSTWEEVVAL-------AKALEAAGADILNT 243 (353)
T ss_pred -C-CCCCCHHHHHHH-------HHHHHHcCCCEEEe
Confidence 2 222355554333 23455555555544
No 352
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=31.11 E-value=3.5e+02 Score=23.45 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhCceEEEec
Q 037554 8 NVQRTVKDLVAAGAAGCFLE 27 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~iE 27 (173)
+..+.+++..++|..||.|-
T Consensus 145 ~f~~aA~~a~~aGfDgVeih 164 (353)
T cd04735 145 AFGEATRRAIEAGFDGVEIH 164 (353)
T ss_pred HHHHHHHHHHHcCCCEEEEc
Confidence 34566677788999999875
No 353
>COG2301 CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism]
Probab=31.10 E-value=1.2e+02 Score=26.00 Aligned_cols=58 Identities=14% Similarity=0.129 Sum_probs=35.7
Q ss_pred hCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcC-CCCEEE-------------------ecCCcccccCC
Q 037554 19 AGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIG-DSDFVL-------------------ARADASFVEAP 78 (173)
Q Consensus 19 aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~-~~d~~I-------------------AGAD~ifv~g~ 78 (173)
+-+.=+.|||.+.|+ ..+.....+..+..... ...++| .|.|+|.+|-.
T Consensus 21 aD~vi~DLEDaVa~~-----------~K~~Ar~~l~~~l~~~~~~~~~~VRIN~l~t~~g~~Dl~av~~~~~d~v~LPK~ 89 (283)
T COG2301 21 ADSVILDLEDAVAPA-----------DKDAARDNLRRALLDLPFTGEVVVRINGLDTPWGADDLAAVVRSAVDGVVLPKV 89 (283)
T ss_pred CCEEEEeccccCCcc-----------chHHHHHHHHHHhcccCccCceEEEecCCCChhhHHHHHHHHhcCCCEEEccCc
Confidence 334457889998753 12333333454444432 223455 78999999999
Q ss_pred CCHHHHhhh
Q 037554 79 RNDNEANWV 87 (173)
Q Consensus 79 ~~~e~i~~i 87 (173)
.+..++..+
T Consensus 90 e~~~~v~~~ 98 (283)
T COG2301 90 ESAADVEEL 98 (283)
T ss_pred CchHHHHHH
Confidence 888776555
No 354
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=30.97 E-value=2.7e+02 Score=22.12 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhCceEEEeccCC
Q 037554 8 NVQRTVKDLVAAGAAGCFLEDQS 30 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~iEDq~ 30 (173)
+....++.|.+.|+..++|=|-.
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~ 51 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLD 51 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCC
Confidence 56667778899999999998764
No 355
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=30.59 E-value=73 Score=24.13 Aligned_cols=26 Identities=8% Similarity=0.181 Sum_probs=22.5
Q ss_pred CCCChHHHHHHHHHHHHhCceEEEec
Q 037554 2 GGGNALNVQRTVKDLVAAGAAGCFLE 27 (173)
Q Consensus 2 GyG~~~~v~rtv~~~~~aGvagi~iE 27 (173)
|+.+..++.+.++.+.+.|+.||.+-
T Consensus 8 ~~~d~~~~~~~~~~~~~~gv~gi~~~ 33 (201)
T cd00945 8 PDATLEDIAKLCDEAIEYGFAAVCVN 33 (201)
T ss_pred CCCCHHHHHHHHHHHHHhCCcEEEEC
Confidence 56677889999999999999999764
No 356
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=30.56 E-value=31 Score=27.78 Aligned_cols=52 Identities=17% Similarity=0.068 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc
Q 037554 6 ALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60 (173)
Q Consensus 6 ~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~ 60 (173)
...+.+.++.+..+|+..|++-+...+. |...+--.+.++..++++.+.+..
T Consensus 66 ~~~i~~~~~~~~~~g~~~i~i~~~~s~~---~~~~~~~~~~~~~~~~~~~~v~~a 117 (237)
T PF00682_consen 66 EEDIERAVEAAKEAGIDIIRIFISVSDL---HIRKNLNKSREEALERIEEAVKYA 117 (237)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEEETSHH---HHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHhccCCEEEecCcccHH---HHHHhhcCCHHHHHHHHHHHHHHH
Confidence 3556677888888999999999987641 111112346788888887666554
No 357
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=30.53 E-value=32 Score=28.94 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=16.1
Q ss_pred CCHHHHHhCCccEEEechHHH
Q 037554 93 HTPEELKAMGFHLTVHPLTAL 113 (173)
Q Consensus 93 ~~~~eL~~lGv~~v~~~~~~~ 113 (173)
-+++.|.++|++||++|+..+
T Consensus 88 ~~v~~ll~~G~~rViiGt~av 108 (241)
T COG0106 88 EDVEALLDAGVARVIIGTAAV 108 (241)
T ss_pred HHHHHHHHCCCCEEEEeccee
Confidence 456788888888888887664
No 358
>PLN02389 biotin synthase
Probab=30.52 E-value=2.6e+02 Score=24.83 Aligned_cols=37 Identities=24% Similarity=0.204 Sum_probs=23.3
Q ss_pred CcccCHHHHHHHHHHHHHhcCCCCEEE-----------------ecCCcccccC
Q 037554 41 KQIIPAEEHAAKIASARDAIGDSDFVL-----------------ARADASFVEA 77 (173)
Q Consensus 41 ~~l~~~ee~~~kI~Aa~~a~~~~d~~I-----------------AGAD~ifv~g 77 (173)
.+..+.++....|..+|-.-.+..+-| +|||.+|+-.
T Consensus 277 ~~~~s~~e~lr~iAi~Rl~lP~~~i~i~~gr~~l~~~~~~~~l~~GAN~~~~g~ 330 (379)
T PLN02389 277 QKPVEIWEMVRMIATARIVMPKAMVRLSAGRVRFSMAEQALCFLAGANSIFTGD 330 (379)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCccccccccccccChhHHHHHHHhCCCEEEECC
Confidence 345677888888888776642211111 7888888754
No 359
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=30.49 E-value=3.2e+02 Score=22.78 Aligned_cols=111 Identities=18% Similarity=0.185 Sum_probs=64.0
Q ss_pred ChHHHHHHHHHHHHhCceEEEecc-CCCCccCCCCCCCcccCHHHHHHHHHHHHHhcC---CCCEEE-------------
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLED-QSWPKKCGHMHGKQIIPAEEHAAKIASARDAIG---DSDFVL------------- 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iED-q~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~---~~d~~I------------- 67 (173)
+...+.+.++++.+.||.-|-|-= .+.| +...++.++-.+|+.-++++.. +..+.|
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDIG~~st~p-------~~~~i~~~~E~~rl~~~v~~i~~~~~~plSIDT~~~~v~e~al~ 94 (257)
T cd00739 22 SLDKAVAHAEKMIAEGADIIDIGGESTRP-------GADPVSVEEELERVIPVLEALRGELDVLISVDTFRAEVARAALE 94 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCC-------CCCCCCHHHHHHHHHHHHHHHHhcCCCcEEEeCCCHHHHHHHHH
Confidence 456788889999999999997742 1222 4456777777888765554432 233444
Q ss_pred ecCCccc-ccCCCCHHHHhhhhcCCCCCHHHHHhCCccEEEech--------------HHHHHHHHHHHHHHHHHHHcCC
Q 037554 68 ARADASF-VEAPRNDNEANWVWGHTLHTPEELKAMGFHLTVHPL--------------TALYASARALVDVLKTLKESGT 132 (173)
Q Consensus 68 AGAD~if-v~g~~~~e~i~~i~g~p~~~~~eL~~lGv~~v~~~~--------------~~~~aa~~a~~~~~~~l~~~g~ 132 (173)
+|+|+|- +.+.+..+++..+ +++.|+..|.++. .........+.+..+.+.+.|-
T Consensus 95 ~G~~iINdisg~~~~~~~~~l----------~~~~~~~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi 164 (257)
T cd00739 95 AGADIINDVSGGSDDPAMLEV----------AAEYGAPLVLMHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGV 164 (257)
T ss_pred hCCCEEEeCCCCCCChHHHHH----------HHHcCCCEEEECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCC
Confidence 7777765 4443321333222 2333444444332 2345566667777777777774
No 360
>PRK07094 biotin synthase; Provisional
Probab=30.11 E-value=2.8e+02 Score=23.37 Aligned_cols=57 Identities=11% Similarity=-0.078 Sum_probs=31.5
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCC
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGD 62 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~ 62 (173)
+..++.++++.+.+.++..+.+-= ..|..-.-+....-.+.++....++.+|..-.+
T Consensus 193 t~ed~~~~l~~l~~l~~~~v~~~~-~~P~pgTpl~~~~~~~~~~~~~~~a~~R~~lp~ 249 (323)
T PRK07094 193 TLEDLADDILFLKELDLDMIGIGP-FIPHPDTPLKDEKGGSLELTLKVLALLRLLLPD 249 (323)
T ss_pred CHHHHHHHHHHHHhCCCCeeeeec-cccCCCCCcccCCCCCHHHHHHHHHHHHHhCcC
Confidence 456777777777777765443321 113211111122345778888888877776544
No 361
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=30.10 E-value=1.7e+02 Score=27.17 Aligned_cols=21 Identities=29% Similarity=0.392 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhCceEEEeccC
Q 037554 8 NVQRTVKDLVAAGAAGCFLEDQ 29 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~iEDq 29 (173)
+..+.++.++++|+.-|.| |.
T Consensus 248 ~~~~r~~~l~~ag~d~i~i-D~ 268 (505)
T PLN02274 248 SDKERLEHLVKAGVDVVVL-DS 268 (505)
T ss_pred cHHHHHHHHHHcCCCEEEE-eC
Confidence 5578899999999999998 54
No 362
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=29.98 E-value=3e+02 Score=22.33 Aligned_cols=88 Identities=17% Similarity=0.139 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEEecCCcccccCCCCHHHHhhh
Q 037554 8 NVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVLARADASFVEAPRNDNEANWV 87 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~IAGAD~ifv~g~~~~e~i~~i 87 (173)
+....++.|.+.|+.-+||=|=..- + ||... .+.+.+|.... ...+.+-| |+++.|++
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~-~-~~~~n------~~~i~~i~~~~----~~~v~vgG-------Gir~~edv--- 93 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAI-M-GRGDN------DEAIRELAAAW----PLGLWVDG-------GIRSLENA--- 93 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccc-c-CCCcc------HHHHHHHHHhC----CCCEEEec-------CcCCHHHH---
Confidence 5666888888899999999996532 1 33211 23444444221 12333211 55665554
Q ss_pred hcCCCCCHHHHHhCCccEEEechHHHHHHHHHHHHHHHHH
Q 037554 88 WGHTLHTPEELKAMGFHLTVHPLTALYASARALVDVLKTL 127 (173)
Q Consensus 88 ~g~p~~~~~eL~~lGv~~v~~~~~~~~aa~~a~~~~~~~l 127 (173)
+.+-.+|+.+|++++..+.. .-+.++++.+
T Consensus 94 --------~~~l~~Ga~~viigt~~~~~--~~~~~~~~~~ 123 (233)
T cd04723 94 --------QEWLKRGASRVIVGTETLPS--DDDEDRLAAL 123 (233)
T ss_pred --------HHHHHcCCCeEEEcceeccc--hHHHHHHHhc
Confidence 45556677777777666554 4455555554
No 363
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=29.96 E-value=2.8e+02 Score=22.85 Aligned_cols=14 Identities=7% Similarity=-0.294 Sum_probs=8.2
Q ss_pred HhCCccEEEechHH
Q 037554 99 KAMGFHLTVHPLTA 112 (173)
Q Consensus 99 ~~lGv~~v~~~~~~ 112 (173)
-..|++.++.|..+
T Consensus 263 l~~G~n~i~~g~~~ 276 (296)
T TIGR00433 263 FMAGANSIFVGDYL 276 (296)
T ss_pred HHhcCceEEEcCcc
Confidence 45566666666544
No 364
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=29.90 E-value=3.5e+02 Score=22.97 Aligned_cols=32 Identities=16% Similarity=0.054 Sum_probs=26.3
Q ss_pred CHHHHHhCCccEEEechHHHHHHHHHHHHHHH
Q 037554 94 TPEELKAMGFHLTVHPLTALYASARALVDVLK 125 (173)
Q Consensus 94 ~~~eL~~lGv~~v~~~~~~~~aa~~a~~~~~~ 125 (173)
.+.++.+.|++-|-+++.+..+.+.++++.+.
T Consensus 215 ~i~~~i~~Gi~kiNv~T~l~~a~~~~~~~~~~ 246 (282)
T TIGR01859 215 QIKKAIKLGIAKINIDTDCRIAFTAAIRKVLT 246 (282)
T ss_pred HHHHHHHcCCCEEEECcHHHHHHHHHHHHHHH
Confidence 45666789999999999998888888877764
No 365
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.76 E-value=45 Score=27.86 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=18.6
Q ss_pred ecCCcccccCC--CCHHHHhhhh---cCCC
Q 037554 68 ARADASFVEAP--RNDNEANWVW---GHTL 92 (173)
Q Consensus 68 AGAD~ifv~g~--~~~e~i~~i~---g~p~ 92 (173)
-+||+||+-+. ++.+-+.+++ |.|.
T Consensus 178 ~~~DaiFiSCTnlRt~eii~~lE~~~G~PV 207 (238)
T COG3473 178 PDADAIFISCTNLRTFEIIEKLERDTGVPV 207 (238)
T ss_pred CCCCeEEEEeeccccHHHHHHHHHHhCCce
Confidence 57999999764 6778888875 5664
No 366
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=29.70 E-value=1.9e+02 Score=25.85 Aligned_cols=77 Identities=25% Similarity=0.345 Sum_probs=40.3
Q ss_pred HHHHHHHHhCceEEEeccCCCCccCCCCCCCc---ccCHHHHHHHHHHHHHhcCCCCEEEecCCcccccCCCCHHHHhhh
Q 037554 11 RTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQ---IIPAEEHAAKIASARDAIGDSDFVLARADASFVEAPRNDNEANWV 87 (173)
Q Consensus 11 rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~---l~~~ee~~~kI~Aa~~a~~~~d~~IAGAD~ifv~g~~~~e~i~~i 87 (173)
+.++.+.++||.||.+.- |. |++ .++.-+.+..|+.++. .+..++ .--|+++..++
T Consensus 257 ~dA~~a~~~Gvd~I~Vs~--------hG-Gr~~d~~~~t~~~L~~i~~a~~--~~~~vi-------~dGGIr~g~Di--- 315 (381)
T PRK11197 257 EDARDAVRFGADGIVVSN--------HG-GRQLDGVLSSARALPAIADAVK--GDITIL-------ADSGIRNGLDV--- 315 (381)
T ss_pred HHHHHHHhCCCCEEEECC--------CC-CCCCCCcccHHHHHHHHHHHhc--CCCeEE-------eeCCcCcHHHH---
Confidence 456778889999998642 32 222 3444455544443321 122222 22234443333
Q ss_pred hcCCCCCHHHHHhCCccEEEechHHHHHH
Q 037554 88 WGHTLHTPEELKAMGFHLTVHPLTALYAS 116 (173)
Q Consensus 88 ~g~p~~~~~eL~~lGv~~v~~~~~~~~aa 116 (173)
--.-.||.+.|.+|...+++.
T Consensus 316 --------~KALaLGA~~V~iGr~~l~~l 336 (381)
T PRK11197 316 --------VRMIALGADTVLLGRAFVYAL 336 (381)
T ss_pred --------HHHHHcCcCceeEhHHHHHHH
Confidence 233456777777777666654
No 367
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=29.54 E-value=1.8e+02 Score=24.94 Aligned_cols=29 Identities=17% Similarity=0.082 Sum_probs=19.3
Q ss_pred HHHHHHHhCceEEEeccCCCCccCCCCCCCcccCH
Q 037554 12 TVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPA 46 (173)
Q Consensus 12 tv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ 46 (173)
..++|+++|++.|--== ..-.+|+.|..+
T Consensus 150 ~a~rLed~Gc~aVMPlg------sPIGSg~Gl~n~ 178 (267)
T CHL00162 150 LAKHLEDIGCATVMPLG------SPIGSGQGLQNL 178 (267)
T ss_pred HHHHHHHcCCeEEeecc------CcccCCCCCCCH
Confidence 56899999999986322 223346677765
No 368
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=29.15 E-value=2.8e+02 Score=22.62 Aligned_cols=92 Identities=17% Similarity=0.082 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE---------------ecCCc
Q 037554 8 NVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL---------------ARADA 72 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I---------------AGAD~ 72 (173)
+....++.|.+.|+--|||=|=..-+ |+. +-.+.+.+|...+ +..+.+ +|||-
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~--g~~------~n~~~i~~i~~~~----~~pv~vgGGirs~edv~~~l~~Ga~k 100 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAF--GRG------SNRELLAEVVGKL----DVKVELSGGIRDDESLEAALATGCAR 100 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccC--CCC------ccHHHHHHHHHHc----CCCEEEcCCCCCHHHHHHHHHCCCCE
Confidence 34457788999999999999965421 221 1125555555433 234555 89998
Q ss_pred ccccCC--CCHHHHhhhh---c------CCC------------------CCHHHHHhCCccEEEechH
Q 037554 73 SFVEAP--RNDNEANWVW---G------HTL------------------HTPEELKAMGFHLTVHPLT 111 (173)
Q Consensus 73 ifv~g~--~~~e~i~~i~---g------~p~------------------~~~~eL~~lGv~~v~~~~~ 111 (173)
+.+-+. ++++.+.++. + .|. --.+.|.++|++.+++..-
T Consensus 101 vviGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~ 168 (241)
T PRK14024 101 VNIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVTDV 168 (241)
T ss_pred EEECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEEee
Confidence 876442 6777777661 1 010 1136677889988887643
No 369
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=29.09 E-value=1e+02 Score=27.10 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHhCceEEEe
Q 037554 6 ALNVQRTVKDLVAAGAAGCFL 26 (173)
Q Consensus 6 ~~~v~rtv~~~~~aGvagi~i 26 (173)
...+...|+++.+.|+-+|-|
T Consensus 56 id~l~~~v~~~~~~GI~~v~l 76 (324)
T PF00490_consen 56 IDSLVKEVEEAVDLGIRAVIL 76 (324)
T ss_dssp HHHHHHHHHHHHHTT--EEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEE
Confidence 356778899999999999877
No 370
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=29.03 E-value=68 Score=28.15 Aligned_cols=75 Identities=12% Similarity=0.042 Sum_probs=44.6
Q ss_pred HHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcC--CCCEEE--------------------
Q 037554 10 QRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIG--DSDFVL-------------------- 67 (173)
Q Consensus 10 ~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~--~~d~~I-------------------- 67 (173)
.+.+++..++|+..|+|-..+.+-+ ...+-=.+.++..+++..+.+... +..+.+
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~Sd~~---~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~ 150 (363)
T TIGR02090 74 KKDIDKAIDCGVDSIHTFIATSPIH---LKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRA 150 (363)
T ss_pred HHHHHHHHHcCcCEEEEEEcCCHHH---HHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHH
Confidence 3557788899999999988876531 110001356666666655544322 222222
Q ss_pred --ecCCccccc---CCCCHHHHhhh
Q 037554 68 --ARADASFVE---APRNDNEANWV 87 (173)
Q Consensus 68 --AGAD~ifv~---g~~~~e~i~~i 87 (173)
+|||.|.+. |.-+++++.++
T Consensus 151 ~~~g~~~i~l~DT~G~~~P~~v~~l 175 (363)
T TIGR02090 151 EEAGADRINIADTVGVLTPQKMEEL 175 (363)
T ss_pred HhCCCCEEEEeCCCCccCHHHHHHH
Confidence 788888763 34567777666
No 371
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=28.94 E-value=4.4e+02 Score=23.88 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=27.2
Q ss_pred CHHHHHhCCccEEEec-------hHHHHHHHHHHHHHHHHHHHcCC
Q 037554 94 TPEELKAMGFHLTVHP-------LTALYASARALVDVLKTLKESGT 132 (173)
Q Consensus 94 ~~~eL~~lGv~~v~~~-------~~~~~aa~~a~~~~~~~l~~~g~ 132 (173)
-.+-+..+|-+.|... +.-..+-.+|++++++...+..+
T Consensus 351 ~p~~~~~~G~Dvil~~GGGi~gHP~G~~aGa~A~rqA~ea~~~g~~ 396 (414)
T cd08206 351 MPALIEILGDDVILQFGGGTHGHPDGPAAGAKANRQALEAWVQGRI 396 (414)
T ss_pred HHHHHHHhCCceEEecCCceecCCCChhhHHHHHHHHHHHHHhCCC
Confidence 3567788887766543 34446788899999998876544
No 372
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=28.89 E-value=1.5e+02 Score=25.38 Aligned_cols=71 Identities=21% Similarity=0.369 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhCceEEEec-cCCCCc--cCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE--ecCCcccccCCCCH
Q 037554 7 LNVQRTVKDLVAAGAAGCFLE-DQSWPK--KCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL--ARADASFVEAPRND 81 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iE-Dq~~pK--rcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I--AGAD~ifv~g~~~~ 81 (173)
.|...|+.++.+.|+.=|.=| |.+.|. .+++.. +-+...+++.+-..| |++| .-.||+|- ++.+.
T Consensus 132 ~Nl~~Ti~eLL~m~viPIvNeNDavs~~~~~~~D~~-----dNDsLsA~laaei~A----DlLilLsDVdglYt-~PPd~ 201 (285)
T KOG1154|consen 132 KNLQNTISELLSMNVIPIVNENDAVSPREIPFGDSS-----DNDSLAAILAAEIKA----DLLILLSDVDGLYT-GPPDA 201 (285)
T ss_pred HHHHHHHHHHHhCCceeeecCCCccCCcccccCCCC-----cccHHHHHHHHHhcc----CEEEEEeccccccc-CCCCC
Confidence 478899999999999887655 544443 333322 345566666655544 7776 89999997 77776
Q ss_pred HHHhhh
Q 037554 82 NEANWV 87 (173)
Q Consensus 82 e~i~~i 87 (173)
+-++-+
T Consensus 202 ~~~~li 207 (285)
T KOG1154|consen 202 DPSKLI 207 (285)
T ss_pred Ccceee
Confidence 666655
No 373
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=28.80 E-value=2.4e+02 Score=24.79 Aligned_cols=85 Identities=13% Similarity=0.024 Sum_probs=45.5
Q ss_pred HHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEEecCCcccccCCCCHHHHhhhhc
Q 037554 10 QRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVLARADASFVEAPRNDNEANWVWG 89 (173)
Q Consensus 10 ~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~IAGAD~ifv~g~~~~e~i~~i~g 89 (173)
.+.++.+.++||.||.+-..-+- .- ....++-+.+..|+.++.+..+ ++- .|.--|+++..++
T Consensus 224 ~~dA~~a~~~G~d~I~vsnhgG~-----~~-d~~~~~~~~L~~i~~~~~~~~~-~~~-----vi~~GGIr~G~Dv----- 286 (344)
T cd02922 224 VEDAVLAAEYGVDGIVLSNHGGR-----QL-DTAPAPIEVLLEIRKHCPEVFD-KIE-----VYVDGGVRRGTDV----- 286 (344)
T ss_pred HHHHHHHHHcCCCEEEEECCCcc-----cC-CCCCCHHHHHHHHHHHHHHhCC-Cce-----EEEeCCCCCHHHH-----
Confidence 45667888999999998753210 00 1123444555555554433211 221 1223345444433
Q ss_pred CCCCCHHHHHhCCccEEEechHHHHHHH
Q 037554 90 HTLHTPEELKAMGFHLTVHPLTALYASA 117 (173)
Q Consensus 90 ~p~~~~~eL~~lGv~~v~~~~~~~~aa~ 117 (173)
-..-.||.+.|.+|...+.+..
T Consensus 287 ------~kalaLGA~aV~iG~~~l~~l~ 308 (344)
T cd02922 287 ------LKALCLGAKAVGLGRPFLYALS 308 (344)
T ss_pred ------HHHHHcCCCEEEECHHHHHHHh
Confidence 3455678888888866666554
No 374
>PRK00719 alkanesulfonate monooxygenase; Provisional
Probab=28.78 E-value=61 Score=28.52 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=23.1
Q ss_pred CCChHHHHHHHHHHHHhCceEEEec
Q 037554 3 GGNALNVQRTVKDLVAAGAAGCFLE 27 (173)
Q Consensus 3 yG~~~~v~rtv~~~~~aGvagi~iE 27 (173)
.|+|.+|++.+++|.++|+.++.|-
T Consensus 304 vGspe~Vae~l~~~~~~Gvd~fil~ 328 (378)
T PRK00719 304 VGDPPTVAARIKEYAALGIDTFILS 328 (378)
T ss_pred ecCHHHHHHHHHHHHHcCCCEEEEc
Confidence 3789999999999999999999994
No 375
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=28.73 E-value=2.2e+02 Score=24.30 Aligned_cols=47 Identities=26% Similarity=0.423 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHH
Q 037554 7 LNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIA 54 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~ 54 (173)
.-|....|.-...|++|+.||=..-|+. ....|...+|.+++..-+.
T Consensus 216 efv~~LaRAa~AvGvaGlF~EtHpdP~~-A~sDgp~mlpL~~le~ll~ 262 (279)
T COG2877 216 EFVPTLARAAVAVGVAGLFIETHPDPDN-AKSDGPNMLPLDKLEALLE 262 (279)
T ss_pred hhHHHHHHHHHHhccceEEEeccCCccc-CCCCCccccCHHHHHHHHH
Confidence 5677777888999999999998776652 2234555555555544333
No 376
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=28.71 E-value=3.3e+02 Score=22.28 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhCceEEEeccC
Q 037554 7 LNVQRTVKDLVAAGAAGCFLEDQ 29 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iEDq 29 (173)
.+..+.++.+.++|+.||.|=|-
T Consensus 88 ~~~~~~i~~~~~~Gadgvii~dl 110 (244)
T PRK13125 88 DSLDNFLNMARDVGADGVLFPDL 110 (244)
T ss_pred hCHHHHHHHHHHcCCCEEEECCC
Confidence 46778899999999999999763
No 377
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=28.70 E-value=1e+02 Score=26.05 Aligned_cols=41 Identities=22% Similarity=0.208 Sum_probs=30.6
Q ss_pred ecCCcccccCCCCHHHHhhh-h---c-CC--------CCCHHHHHhCCccEEEec
Q 037554 68 ARADASFVEAPRNDNEANWV-W---G-HT--------LHTPEELKAMGFHLTVHP 109 (173)
Q Consensus 68 AGAD~ifv~g~~~~e~i~~i-~---g-~p--------~~~~~eL~~lGv~~v~~~ 109 (173)
+|||.|.+.. -++++++++ . . .| .-++.++.+.|++.++.+
T Consensus 197 ~gaDyI~ld~-~~~e~lk~~v~~~~~~ipi~AsGGI~~~ni~~~a~~Gvd~Isvg 250 (265)
T TIGR00078 197 AGADIIMLDN-MKPEEIKEAVQLLKGRVLLEASGGITLDNLEEYAETGVDVISSG 250 (265)
T ss_pred cCCCEEEECC-CCHHHHHHHHHHhcCCCcEEEECCCCHHHHHHHHHcCCCEEEeC
Confidence 8999998854 467777776 1 1 33 246789999999999994
No 378
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=28.67 E-value=1.5e+02 Score=26.36 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhCceEEEec
Q 037554 7 LNVQRTVKDLVAAGAAGCFLE 27 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iE 27 (173)
.+..+.++.++++||..|.+-
T Consensus 141 ~~~~e~a~~l~eaGvd~I~vh 161 (368)
T PRK08649 141 QRAQELAPTVVEAGVDLFVIQ 161 (368)
T ss_pred cCHHHHHHHHHHCCCCEEEEe
Confidence 456788889999999999984
No 379
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=28.40 E-value=1.6e+02 Score=26.37 Aligned_cols=72 Identities=18% Similarity=0.214 Sum_probs=49.0
Q ss_pred HHHHHHHHHhCceEEEec-cCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEEecCCcccccCCCCHHHHhhh
Q 037554 10 QRTVKDLVAAGAAGCFLE-DQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVLARADASFVEAPRNDNEANWV 87 (173)
Q Consensus 10 ~rtv~~~~~aGvagi~iE-Dq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~IAGAD~ifv~g~~~~e~i~~i 87 (173)
...|++|++||..=||+- |..-||..--+.|..=.+++...+-.+.+..+ ..|++||= +++||..|.| +.++
T Consensus 204 ~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a--~idvlIaP---v~lPG~ND~E-~~~i 276 (414)
T COG2100 204 KKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANA--GIDVLIAP---VWLPGVNDDE-MPKI 276 (414)
T ss_pred HHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhC--CCCEEEee---eecCCcChHH-HHHH
Confidence 367899999999999996 44557765555666666777666666666553 46777653 5778976554 4444
No 380
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=28.05 E-value=2.2e+02 Score=27.61 Aligned_cols=79 Identities=22% Similarity=0.155 Sum_probs=0.0
Q ss_pred ceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE---------------------ecCC-cccccCC
Q 037554 21 AAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL---------------------ARAD-ASFVEAP 78 (173)
Q Consensus 21 vagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I---------------------AGAD-~ifv~g~ 78 (173)
++|+.+ |.... ..|+++.+ +++++. +.|+++ +|++ +.++-|
T Consensus 608 ~~GfeV-~~~~~----------~~s~e~~v---~aa~~~--~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G~~~v~vl~G- 670 (714)
T PRK09426 608 DLGFDV-DIGPL----------FQTPEEAA---RQAVEN--DVHVVGVSSLAAGHKTLVPALIEALKKLGREDIMVVVG- 670 (714)
T ss_pred hCCeeE-ecCCC----------CCCHHHHH---HHHHHc--CCCEEEEeccchhhHHHHHHHHHHHHhcCCCCcEEEEe-
Q ss_pred CCHHHHhhhhc-CCCCCHHHHHhCCccEEEechHHHHHHHHHHHHHHHH
Q 037554 79 RNDNEANWVWG-HTLHTPEELKAMGFHLTVHPLTALYASARALVDVLKT 126 (173)
Q Consensus 79 ~~~e~i~~i~g-~p~~~~~eL~~lGv~~v~~~~~~~~aa~~a~~~~~~~ 126 (173)
| .|.-..++|.++|++.++++..-..+.+..+++.+..
T Consensus 671 ----------G~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~~ 709 (714)
T PRK09426 671 ----------GVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLSA 709 (714)
T ss_pred ----------CCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHHH
No 381
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=27.86 E-value=4e+02 Score=23.01 Aligned_cols=24 Identities=17% Similarity=0.007 Sum_probs=18.4
Q ss_pred CHHHHHhCCccEEEechHHHHHHH
Q 037554 94 TPEELKAMGFHLTVHPLTALYASA 117 (173)
Q Consensus 94 ~~~eL~~lGv~~v~~~~~~~~aa~ 117 (173)
++...-.+|.+.|.++..++++++
T Consensus 268 di~kaLalGAd~V~igr~~L~~~~ 291 (333)
T TIGR02151 268 DVAKAIALGADAVGMARPFLKAAL 291 (333)
T ss_pred HHHHHHHhCCCeehhhHHHHHHHH
Confidence 445556689999999988887775
No 382
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=27.83 E-value=1.8e+02 Score=23.13 Aligned_cols=23 Identities=22% Similarity=0.102 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhCceEEEeccCC
Q 037554 8 NVQRTVKDLVAAGAAGCFLEDQS 30 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~iEDq~ 30 (173)
+....++.|.+.|+..+++-|-.
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dld 53 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDLD 53 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCC
Confidence 66778888999999999999963
No 383
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=27.76 E-value=1.2e+02 Score=26.04 Aligned_cols=90 Identities=8% Similarity=0.003 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEEecCCcccccCCCCHHHHhhhhc
Q 037554 10 QRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVLARADASFVEAPRNDNEANWVWG 89 (173)
Q Consensus 10 ~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~IAGAD~ifv~g~~~~e~i~~i~g 89 (173)
.+.++.+.++|+.-++.--++.|+-+.++ ++-.+.++..+.|+-++++..+.. .+.|+|+=.| .|.+++
T Consensus 156 ~e~l~~l~~aG~dv~~hnlEt~~~l~~~v--rr~~t~e~~Le~l~~ak~~~pgi~---~~TgiIVGlG-ETeee~----- 224 (302)
T TIGR00510 156 IAALDILLDAPPDVYNHNLETVERLTPFV--RPGATYRWSLKLLERAKEYLPNLP---TKSGIMVGLG-ETNEEI----- 224 (302)
T ss_pred HHHHHHHHHcCchhhcccccchHHHHHHh--CCCCCHHHHHHHHHHHHHhCCCCe---ecceEEEECC-CCHHHH-----
Q ss_pred CCCCCHHHHHhCCccEEEechHH
Q 037554 90 HTLHTPEELKAMGFHLTVHPLTA 112 (173)
Q Consensus 90 ~p~~~~~eL~~lGv~~v~~~~~~ 112 (173)
.-+++.|.++|+..+.++..+
T Consensus 225 --~etl~~Lrelg~d~v~igqYl 245 (302)
T TIGR00510 225 --KQTLKDLRDHGVTMVTLGQYL 245 (302)
T ss_pred --HHHHHHHHhcCCCEEEeeccc
No 384
>PRK00957 methionine synthase; Provisional
Probab=27.23 E-value=2.2e+02 Score=23.93 Aligned_cols=43 Identities=14% Similarity=0.127 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHh
Q 037554 9 VQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDA 59 (173)
Q Consensus 9 v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a 59 (173)
..+-++.+.++|+.-|+|.|-...- .+.+.+.+..-++.+.++
T Consensus 146 ~~~~i~~l~~~G~~~IqiDEP~l~~--------~~~~~~~~~~~~~~~~~~ 188 (305)
T PRK00957 146 LRKEAEALEKAGVAMIQIDEPILST--------GAYDLEVAKKAIDIITKG 188 (305)
T ss_pred HHHHHHHHHHcCCCEEEecChhhhc--------CCchHHHHHHHHHHHHHh
Confidence 3455677899999999999865421 244555555555555444
No 385
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=27.16 E-value=3.9e+02 Score=22.65 Aligned_cols=47 Identities=9% Similarity=-0.037 Sum_probs=33.3
Q ss_pred ecCCccccc--------CCCCHHHHhhh-h--cCCC---------CCHHHHHhCCccEEEechHHHH
Q 037554 68 ARADASFVE--------APRNDNEANWV-W--GHTL---------HTPEELKAMGFHLTVHPLTALY 114 (173)
Q Consensus 68 AGAD~ifv~--------g~~~~e~i~~i-~--g~p~---------~~~~eL~~lGv~~v~~~~~~~~ 114 (173)
+|+|+|.+. |+.+++.|+.+ + ..|. -.+.+.-++|+.-|..++...+
T Consensus 143 ~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~ 209 (248)
T cd04728 143 AGCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAK 209 (248)
T ss_pred cCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcC
Confidence 899999651 34577777777 1 2331 2456778899999999987765
No 386
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=27.03 E-value=5e+02 Score=23.86 Aligned_cols=36 Identities=14% Similarity=0.086 Sum_probs=24.8
Q ss_pred CHHHHHhCCccEEEec-------hHHHHHHHHHHHHHHHHHHH
Q 037554 94 TPEELKAMGFHLTVHP-------LTALYASARALVDVLKTLKE 129 (173)
Q Consensus 94 ~~~eL~~lGv~~v~~~-------~~~~~aa~~a~~~~~~~l~~ 129 (173)
-.+-+..+|-+.|+.. +.-..+-.++++++++...+
T Consensus 364 vp~~~~~~G~Dvil~~GGGi~gHP~G~~aGa~A~rqA~ea~~~ 406 (450)
T cd08212 364 MHQLIEIFGDDVVLQFGGGTIGHPWGIAAGATANRVALEAMVQ 406 (450)
T ss_pred HHHHHHhcCCceEEecCcceecCCCChhHHHHHHHHHHHHHHH
Confidence 3466778888766543 23346778888888888776
No 387
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=26.97 E-value=47 Score=27.06 Aligned_cols=45 Identities=20% Similarity=0.169 Sum_probs=27.2
Q ss_pred ecCCcccccCCC-----CHHHHhhh-h---cCC-------------CCCHHHHHhCCccEEEechHH
Q 037554 68 ARADASFVEAPR-----NDNEANWV-W---GHT-------------LHTPEELKAMGFHLTVHPLTA 112 (173)
Q Consensus 68 AGAD~ifv~g~~-----~~e~i~~i-~---g~p-------------~~~~~eL~~lGv~~v~~~~~~ 112 (173)
+|||++.+-.++ |.+-++++ + +.| .-.+++|.++||++|......
T Consensus 84 ~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSGg~ 150 (201)
T PF03932_consen 84 LGADGFVFGALTEDGEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSGGA 150 (201)
T ss_dssp TT-SEEEE--BETTSSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEESTTS
T ss_pred cCCCeeEEEeECCCCCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCCCC
Confidence 899997764443 45566666 1 122 235799999999999876554
No 388
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=26.90 E-value=86 Score=27.61 Aligned_cols=115 Identities=20% Similarity=0.153 Sum_probs=57.7
Q ss_pred HHHHHHHHhCceEEEeccCCCCccCCCCCCCc---ccCHHHHHHHHHHHHHhcCCCCEEEecCCcccccCCCCHHHHhhh
Q 037554 11 RTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQ---IIPAEEHAAKIASARDAIGDSDFVLARADASFVEAPRNDNEANWV 87 (173)
Q Consensus 11 rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~---l~~~ee~~~kI~Aa~~a~~~~d~~IAGAD~ifv~g~~~~e~i~~i 87 (173)
+.++.+.++||.||.+-=. .|++ -+|.-+....|+.++. .+.+++ +=-|+++..++
T Consensus 237 ~da~~~~~~G~~~i~vs~h---------GGr~~d~~~~~~~~L~~i~~~~~--~~~~i~-------~dgGir~g~Dv--- 295 (356)
T PF01070_consen 237 EDAKRAVDAGVDGIDVSNH---------GGRQLDWGPPTIDALPEIRAAVG--DDIPII-------ADGGIRRGLDV--- 295 (356)
T ss_dssp HHHHHHHHTT-SEEEEESG---------TGTSSTTS-BHHHHHHHHHHHHT--TSSEEE-------EESS--SHHHH---
T ss_pred HHHHHHHhcCCCEEEecCC---------CcccCccccccccccHHHHhhhc--CCeeEE-------EeCCCCCHHHH---
Confidence 5678889999999976532 1222 2344455555555442 123322 11244444333
Q ss_pred hcCCCCCHHHHHhCCccEEEechHHHHHHHHHHHHHHHHHHHcCCcccccccCCCHHHHHHhcChhhHHHHHhcc
Q 037554 88 WGHTLHTPEELKAMGFHLTVHPLTALYASARALVDVLKTLKESGTTRDHLEKMGTFEEFNQLVNLESWFEIEGRY 162 (173)
Q Consensus 88 ~g~p~~~~~eL~~lGv~~v~~~~~~~~aa~~a~~~~~~~l~~~g~~~~~~~~~~~~~e~~~l~g~~~~~~~~~~y 162 (173)
-..-.||.+.|.++-..++++...=.+.+..+.+. +.. .......++|.....++.+++
T Consensus 296 --------~kalaLGA~~v~igr~~l~~l~~~g~~gv~~~~~~-----l~~---el~~~m~l~G~~~~~~l~~~~ 354 (356)
T PF01070_consen 296 --------AKALALGADAVGIGRPFLYALAAGGEEGVERVLEI-----LKE---ELKRAMFLLGARSIAELRRSL 354 (356)
T ss_dssp --------HHHHHTT-SEEEESHHHHHHHHHHHHHHHHHHHHH-----HHH---HHHHHHHHHT-SBGGGHTGGG
T ss_pred --------HHHHHcCCCeEEEccHHHHHHHHhhHHHHHHHHHH-----HHH---HHHHHHHHHCCCCHHHhCHHh
Confidence 34557899999999888887654434444433321 001 133444556666655555544
No 389
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=26.74 E-value=3.1e+02 Score=24.39 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=27.1
Q ss_pred ecCCcccccCC-----CCHHHHhhh-------h-c------------CCCCCHHHHHhCCccEEEec
Q 037554 68 ARADASFVEAP-----RNDNEANWV-------W-G------------HTLHTPEELKAMGFHLTVHP 109 (173)
Q Consensus 68 AGAD~ifv~g~-----~~~e~i~~i-------~-g------------~p~~~~~eL~~lGv~~v~~~ 109 (173)
+|||.+-++++ .+.+++.++ | + +|..-.+-+..+|-+.|...
T Consensus 279 aGaD~~~~~t~~Gk~~~~~~~~~~~~~~~~~~~~~~k~~~Pv~sgG~~~~~vp~~~~~~G~Dvil~~ 345 (366)
T cd08148 279 AGGDFIHTGTVVGKMALEREEALGIADALTDDWAGFKRVFPVASGGIHPGLVPGILRDFGIDVILQA 345 (366)
T ss_pred cCCCccccCCcccCcCCCHHHHHHHHHHHhCcccCCCCceEeccCCCChhHHHHHHHHhCCcEEEEc
Confidence 99999998875 256666666 1 1 22233466777887766554
No 390
>PLN02444 HMP-P synthase
Probab=26.70 E-value=83 Score=29.92 Aligned_cols=72 Identities=18% Similarity=0.000 Sum_probs=51.2
Q ss_pred CcccCHHHHHHHHHHHHHhcCCCCEEEecCCcccccCC-CCHHHHhhh---h-----c-CCC-------------CC---
Q 037554 41 KQIIPAEEHAAKIASARDAIGDSDFVLARADASFVEAP-RNDNEANWV---W-----G-HTL-------------HT--- 94 (173)
Q Consensus 41 ~~l~~~ee~~~kI~Aa~~a~~~~d~~IAGAD~ifv~g~-~~~e~i~~i---~-----g-~p~-------------~~--- 94 (173)
....++++=++|++.|.+ .|||.|+=-+. .+..++++- + | .|. +|
T Consensus 231 ~~~s~ie~EveK~~~A~~---------~GADTvMDLSTGgdi~~iR~~Il~~spvPVGTVPIYqA~~~~~~~~~~lt~d~ 301 (642)
T PLN02444 231 AVTSSIEEEVYKLQWATM---------WGADTVMDLSTGRHIHETREWILRNSPVPVGTVPIYQALEKVDGIAENLTWEV 301 (642)
T ss_pred CCCCCHHHHHHHHHHHHH---------cCCCeEeeccCCCCHHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHH
Confidence 356799999999999886 69999984333 467777665 1 3 341 33
Q ss_pred ----HHHHHhCCccEEEechHHHHHHHHHHH
Q 037554 95 ----PEELKAMGFHLTVHPLTALYASARALV 121 (173)
Q Consensus 95 ----~~eL~~lGv~~v~~~~~~~~aa~~a~~ 121 (173)
+++=.+-||+++.++....+..+.-+.
T Consensus 302 ~~d~ieeQaeqGVDfmTIH~Gv~~~~v~~~~ 332 (642)
T PLN02444 302 FRETLIEQAEQGVDYFTIHAGVLLRYIPLTA 332 (642)
T ss_pred HHHHHHHHHHhCCCEEEEChhhHHHHHHHHh
Confidence 445567899999999888776666554
No 391
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=26.59 E-value=2.3e+02 Score=26.10 Aligned_cols=54 Identities=24% Similarity=0.252 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE----------------ecC
Q 037554 7 LNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL----------------ARA 70 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I----------------AGA 70 (173)
.++.+.++.|.++|+.-|.| |.+. || + ....+++.+||.. -|++.| |||
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~-D~a~----~~--~---~~~~~~i~~ik~~-----~p~~~v~agnv~t~~~a~~l~~aGa 290 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVV-DTAH----GH--Q---EKMLEALRAVRAL-----DPGVPIVAGNVVTAEGTRDLVEAGA 290 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEE-eccC----Cc--c---HHHHHHHHHHHHH-----CCCCeEEeeccCCHHHHHHHHHcCC
Confidence 36778899999999999888 5442 22 2 2345666666642 244444 899
Q ss_pred Ccccc
Q 037554 71 DASFV 75 (173)
Q Consensus 71 D~ifv 75 (173)
|+|=|
T Consensus 291 d~v~v 295 (479)
T PRK07807 291 DIVKV 295 (479)
T ss_pred CEEEE
Confidence 99863
No 392
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=26.33 E-value=2.8e+02 Score=23.60 Aligned_cols=49 Identities=24% Similarity=0.362 Sum_probs=33.4
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHH
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIA 54 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~ 54 (173)
...-|.-..+.-+.+|+.|+.||=...|.+ ....+.+.++++++..-++
T Consensus 199 ~r~~v~~la~AAvA~GaDGl~iEvHpdP~~-AlsDg~q~l~~~~~~~ll~ 247 (258)
T TIGR01362 199 LREFVPTLARAAVAVGIDGLFMETHPDPKN-AKSDGPNMLPLSELEGLLE 247 (258)
T ss_pred cHHHHHHHHHHHHHhCCCEEEEEeCCCccc-cCCCccccCCHHHHHHHHH
Confidence 345566777888999999999997665543 3445666676666554433
No 393
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=26.14 E-value=4e+02 Score=22.45 Aligned_cols=101 Identities=19% Similarity=0.137 Sum_probs=56.8
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE--------------ecC
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL--------------ARA 70 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I--------------AGA 70 (173)
++....+.+++..+.|+.+|.|-=... +. +.. ...+.+++| ++.-. ..+++ +||
T Consensus 127 ~~~~~~~~i~~~~~~g~~~i~l~~~~p-----~~-~~~--~~~~~i~~l---~~~~~-~pvivK~v~s~~~a~~a~~~G~ 194 (299)
T cd02809 127 DREITEDLLRRAEAAGYKALVLTVDTP-----VL-GRR--LTWDDLAWL---RSQWK-GPLILKGILTPEDALRAVDAGA 194 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCC-----CC-CCC--CCHHHHHHH---HHhcC-CCEEEeecCCHHHHHHHHHCCC
Confidence 466777888888999999877643221 11 111 112344444 33322 23433 899
Q ss_pred CcccccC---------CCCHHHHhhh-h--c--CC---------CCCHHHHHhCCccEEEechHHHHHHH
Q 037554 71 DASFVEA---------PRNDNEANWV-W--G--HT---------LHTPEELKAMGFHLTVHPLTALYASA 117 (173)
Q Consensus 71 D~ifv~g---------~~~~e~i~~i-~--g--~p---------~~~~~eL~~lGv~~v~~~~~~~~aa~ 117 (173)
|+|.+.+ +.+.+.+.++ . . .| ..++...-.+|.+-|.+|...+.+..
T Consensus 195 d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~ 264 (299)
T cd02809 195 DGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLA 264 (299)
T ss_pred CEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHHH
Confidence 9998833 2334444444 1 1 22 12444445699999999987766543
No 394
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=26.13 E-value=2.8e+02 Score=23.70 Aligned_cols=52 Identities=21% Similarity=0.347 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHH
Q 037554 6 ALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARD 58 (173)
Q Consensus 6 ~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~ 58 (173)
..-|--..+.-+.+|+.|+.||=...|.+ ....+.+.++++++..-++..+.
T Consensus 208 r~~v~~la~AAvA~GadGl~iEvHpdP~~-AlsDg~q~l~~~~~~~ll~~l~~ 259 (264)
T PRK05198 208 REFVPVLARAAVAVGVAGLFIETHPDPDN-ALSDGPNMLPLDKLEPLLEQLKA 259 (264)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCCCccc-cCCCccccCCHHHHHHHHHHHHH
Confidence 34566777888999999999996665542 34456777787777665555443
No 395
>PRK14847 hypothetical protein; Provisional
Probab=26.01 E-value=3.1e+02 Score=24.17 Aligned_cols=28 Identities=14% Similarity=-0.130 Sum_probs=18.7
Q ss_pred ceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHh
Q 037554 21 AAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDA 59 (173)
Q Consensus 21 vagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a 59 (173)
+.=|+|-|.++ +..+.++.+.|+..++.
T Consensus 207 a~~i~l~DTVG-----------~~~P~~~~~~i~~l~~~ 234 (333)
T PRK14847 207 KMIINLPATVE-----------SSTANVYADQIEWMHRS 234 (333)
T ss_pred CcEEEeCCccc-----------cCCHHHHHHHHHHHHHh
Confidence 44588888774 45567777777776654
No 396
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=25.97 E-value=2.2e+02 Score=24.09 Aligned_cols=18 Identities=22% Similarity=-0.057 Sum_probs=11.8
Q ss_pred HHHHHhCce-EEEeccCCC
Q 037554 14 KDLVAAGAA-GCFLEDQSW 31 (173)
Q Consensus 14 ~~~~~aGva-gi~iEDq~~ 31 (173)
+...++|+. -|+|=|.++
T Consensus 156 ~~~~~~G~~~~i~l~DTvG 174 (279)
T cd07947 156 KLSKESGIPVKIRLCDTLG 174 (279)
T ss_pred HHHHHCCCCEEEEeccCCC
Confidence 333347877 688888774
No 397
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=25.96 E-value=4.6e+02 Score=23.08 Aligned_cols=105 Identities=17% Similarity=0.198 Sum_probs=66.4
Q ss_pred HHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE----------------------
Q 037554 10 QRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL---------------------- 67 (173)
Q Consensus 10 ~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I---------------------- 67 (173)
.+.++..+++||.+|-+-=+.+ |++... .-.+.+++.+-|+-|.++ +..+++
T Consensus 16 l~~l~~ai~~GADaVY~G~~~~---~~R~~a-~nfs~~~l~e~i~~ah~~--gkk~~V~~N~~~~~~~~~~~~~~l~~l~ 89 (347)
T COG0826 16 LEDLKAAIAAGADAVYIGEKEF---GLRRRA-LNFSVEDLAEAVELAHSA--GKKVYVAVNTLLHNDELETLERYLDRLV 89 (347)
T ss_pred HHHHHHHHHcCCCEEEeCCccc---cccccc-ccCCHHHHHHHHHHHHHc--CCeEEEEeccccccchhhHHHHHHHHHH
Confidence 4566778889999988765422 333322 346778877767766654 334444
Q ss_pred -ecCCcccccCCCCHHHHhhhh--c--CC-----------CCCHHHHHhCCccEEEechHHHHHHHHHHHHH
Q 037554 68 -ARADASFVEAPRNDNEANWVW--G--HT-----------LHTPEELKAMGFHLTVHPLTALYASARALVDV 123 (173)
Q Consensus 68 -AGAD~ifv~g~~~~e~i~~i~--g--~p-----------~~~~~eL~~lGv~~v~~~~~~~~aa~~a~~~~ 123 (173)
+|+|.|.+ .|+--+.-+. + .| .-+++-+.++|++||..+.-+-..-+..+.+.
T Consensus 90 e~GvDaviv---~Dpg~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rEls~~ei~~i~~~ 158 (347)
T COG0826 90 ELGVDAVIV---ADPGLIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRVVLPRELSLEEIKEIKEQ 158 (347)
T ss_pred HcCCCEEEE---cCHHHHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEEEeCccCCHHHHHHHHHh
Confidence 89999876 4665555441 2 12 24678889999999999876655544444433
No 398
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=25.61 E-value=2.6e+02 Score=25.22 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHhCceEEEe
Q 037554 8 NVQRTVKDLVAAGAAGCFL 26 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~i 26 (173)
+..+-++.+.++|+-.|.|
T Consensus 224 ~~~~r~~~L~~aG~d~I~v 242 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVI 242 (450)
T ss_pred hHHHHHHHHHHhCCCEEEE
Confidence 4456677999999999999
No 399
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=25.57 E-value=4.5e+02 Score=23.01 Aligned_cols=34 Identities=9% Similarity=0.022 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhCceE-EEeccCCCCccCCCCCCCcccCHHHHH
Q 037554 9 VQRTVKDLVAAGAAG-CFLEDQSWPKKCGHMHGKQIIPAEEHA 50 (173)
Q Consensus 9 v~rtv~~~~~aGvag-i~iEDq~~pKrcg~~~g~~l~~~ee~~ 50 (173)
..+.++...++|+.| |.+-|... ...++|++.+-
T Consensus 216 ~i~~~~~~ieaGa~~~i~i~~~~s--------~~~~lsp~~f~ 250 (378)
T cd03308 216 MIKMGTATAPAPYPGPVFTPIPLH--------LPPFLRPKQFE 250 (378)
T ss_pred HHHHHHHHHHhCCCCceEEEeccc--------ccCccCHHHHH
Confidence 445567778899998 77766542 23577777665
No 400
>PLN02979 glycolate oxidase
Probab=25.50 E-value=2.4e+02 Score=25.27 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=14.4
Q ss_pred HHHHHHHHHhCceEEEecc
Q 037554 10 QRTVKDLVAAGAAGCFLED 28 (173)
Q Consensus 10 ~rtv~~~~~aGvagi~iED 28 (173)
.+.++.+.++||.||.+-=
T Consensus 234 ~~dA~~a~~~Gvd~I~Vsn 252 (366)
T PLN02979 234 GEDARIAIQAGAAGIIVSN 252 (366)
T ss_pred HHHHHHHHhcCCCEEEECC
Confidence 3567788899999997654
No 401
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=25.42 E-value=1.1e+02 Score=26.04 Aligned_cols=20 Identities=35% Similarity=0.180 Sum_probs=17.5
Q ss_pred ecCCcccccCCCCHHHHhhh
Q 037554 68 ARADASFVEAPRNDNEANWV 87 (173)
Q Consensus 68 AGAD~ifv~g~~~~e~i~~i 87 (173)
+|+|+|+++.+.+.+|++.+
T Consensus 152 ~gvD~i~~ET~~~~~E~~~~ 171 (304)
T PRK09485 152 AGADLLACETIPNLDEAEAL 171 (304)
T ss_pred CCCCEEEEeccCCHHHHHHH
Confidence 89999999999999887755
No 402
>smart00351 PAX Paired Box domain.
Probab=25.37 E-value=2.4e+02 Score=20.73 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=30.1
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCE
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDF 65 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~ 65 (173)
+...|.+.+++|.+.|. +-||.+||...+.+ + ++....|.+.+.. +|++
T Consensus 46 s~~tV~kwi~r~~~~G~--------~~pk~~gg~rp~~~-~-~~~~~~I~~~~~~--~p~~ 94 (125)
T smart00351 46 SHGCVSKILGRYYETGS--------IRPGAIGGSKPKVA-T-PKVVKKIADYKQE--NPGI 94 (125)
T ss_pred CHHHHHHHHHHHHHcCC--------cCCcCCCCCCCCcc-C-HHHHHHHHHHHHH--CCCC
Confidence 45678889999999885 56888876433333 2 2444556655443 4553
No 403
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=25.24 E-value=2.5e+02 Score=25.89 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhCceEEEec
Q 037554 8 NVQRTVKDLVAAGAAGCFLE 27 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~iE 27 (173)
+....++.+.++|+.-|+|.
T Consensus 241 ~~~~~~~~l~~ag~d~i~id 260 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVVD 260 (495)
T ss_pred HHHHHHHHHHHCCCCEEEEe
Confidence 45788999999999999984
No 404
>PRK00208 thiG thiazole synthase; Reviewed
Probab=24.73 E-value=4.3e+02 Score=22.38 Aligned_cols=29 Identities=24% Similarity=0.221 Sum_probs=19.4
Q ss_pred CccCCCCCCC-cccCHHHHHHHHHHHHHhc
Q 037554 32 PKKCGHMHGK-QIIPAEEHAAKIASARDAI 60 (173)
Q Consensus 32 pKrcg~~~g~-~l~~~ee~~~kI~Aa~~a~ 60 (173)
+++|-.+++. ...+.+|++.--+-||++-
T Consensus 60 ~~~~~~lpNTaG~~ta~eAv~~a~lare~~ 89 (250)
T PRK00208 60 PLGVTLLPNTAGCRTAEEAVRTARLAREAL 89 (250)
T ss_pred ccCCEECCCCCCCCCHHHHHHHHHHHHHHh
Confidence 4566666553 4678889887777777654
No 405
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=24.61 E-value=3.6e+02 Score=21.34 Aligned_cols=47 Identities=17% Similarity=0.054 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcC
Q 037554 7 LNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIG 61 (173)
Q Consensus 7 ~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~ 61 (173)
......+++..+.||..|-+==..+ .... -..+++.+-|++++++..
T Consensus 69 ~~k~~eve~A~~~GAdevdvv~~~g-----~~~~---~~~~~~~~ei~~v~~~~~ 115 (203)
T cd00959 69 EVKVAEAREAIADGADEIDMVINIG-----ALKS---GDYEAVYEEIAAVVEACG 115 (203)
T ss_pred HHHHHHHHHHHHcCCCEEEEeecHH-----HHhC---CCHHHHHHHHHHHHHhcC
Confidence 4456668888999999884421111 0000 023567777777777754
No 406
>smart00876 BATS Biotin and Thiamin Synthesis associated domain. Biotin synthase (BioB), , catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer PUBMED:12482614. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimerPUBMED:12650933. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers PUBMED:12482614, PUBMED:12650933. This domain therefore may be involved in co-factor binding or dimerisation.
Probab=24.58 E-value=2e+02 Score=20.00 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=17.3
Q ss_pred cccCHHHHHHHHHHHHHhcCCCCE
Q 037554 42 QIIPAEEHAAKIASARDAIGDSDF 65 (173)
Q Consensus 42 ~l~~~ee~~~kI~Aa~~a~~~~d~ 65 (173)
+.++.++++.-|.++|-+-.+..+
T Consensus 18 ~~~~~~~~l~~ia~~Rl~~P~~~I 41 (94)
T smart00876 18 PPVSPEEFLRTIAAARLALPDAGI 41 (94)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcce
Confidence 457899999888888877543333
No 407
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=24.56 E-value=3e+02 Score=25.45 Aligned_cols=21 Identities=19% Similarity=0.017 Sum_probs=16.4
Q ss_pred HHHHHHHHHhCceEEEeccCCCC
Q 037554 10 QRTVKDLVAAGAAGCFLEDQSWP 32 (173)
Q Consensus 10 ~rtv~~~~~aGvagi~iEDq~~p 32 (173)
.+.++.++++||.+|-+ ..+|
T Consensus 295 ~e~a~~li~aGAd~I~v--g~g~ 315 (502)
T PRK07107 295 REGFRYLAEAGADFVKV--GIGG 315 (502)
T ss_pred HHHHHHHHHcCCCEEEE--CCCC
Confidence 35788899999999988 4443
No 408
>PF13565 HTH_32: Homeodomain-like domain
Probab=24.47 E-value=1.7e+02 Score=18.96 Aligned_cols=44 Identities=20% Similarity=0.242 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHh
Q 037554 9 VQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDA 59 (173)
Q Consensus 9 v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a 59 (173)
|.+.+++|.+-|.+|+. |....++ .|++.. .+++...|.+.+..
T Consensus 2 v~rw~~ry~~~G~~gL~--~~~~~~~----~Grp~~-~~e~~~~i~~~~~~ 45 (77)
T PF13565_consen 2 VYRWLKRYREEGLEGLK--DRKRRPR----PGRPRK-DPEQRERIIALIEE 45 (77)
T ss_pred HHHHHHHHHhhCchhhh--cccccCC----CCCCCC-cHHHHHHHHHHHHh
Confidence 67889999999999986 3211122 233322 45666777777654
No 409
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=24.35 E-value=2.3e+02 Score=21.26 Aligned_cols=47 Identities=19% Similarity=0.053 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhc
Q 037554 6 ALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAI 60 (173)
Q Consensus 6 ~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~ 60 (173)
..+..+.++.+.++|+.++.+---... .. .+ +.++..+.+++++++.
T Consensus 64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~---~~-~~----~~~~~~~~~~~i~~~~ 110 (201)
T cd00945 64 TEVKVAEVEEAIDLGADEIDVVINIGS---LK-EG----DWEEVLEEIAAVVEAA 110 (201)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccHHH---Hh-CC----CHHHHHHHHHHHHHHh
Confidence 577889999999999999988532210 00 00 2577777777777764
No 410
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=24.26 E-value=2.2e+02 Score=25.43 Aligned_cols=72 Identities=17% Similarity=0.085 Sum_probs=40.4
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccC--CCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE---------------
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKC--GHMHGKQIIPAEEHAAKIASARDAIGDSDFVL--------------- 67 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrc--g~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I--------------- 67 (173)
||.+....++....-+ .||+|-=...+|.- |+. |--|+.--|.+..+--++.+..+..+.+
T Consensus 84 dp~~ll~Aa~lv~~y~-D~idlNcGCPq~~a~~g~y-Ga~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~a 161 (358)
T KOG2335|consen 84 DPENLLKAARLVQPYC-DGIDLNCGCPQKVAKRGGY-GAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYA 161 (358)
T ss_pred CHHHHHHHHHHhhhhc-CcccccCCCCHHHHhcCCc-cceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHH
Confidence 5677777776666666 88887665543321 222 2234433344443333344443333443
Q ss_pred -----ecCCcccccCC
Q 037554 68 -----ARADASFVEAP 78 (173)
Q Consensus 68 -----AGAD~ifv~g~ 78 (173)
||++.+.|+|.
T Consensus 162 k~~e~aG~~~ltVHGR 177 (358)
T KOG2335|consen 162 KMLEDAGVSLLTVHGR 177 (358)
T ss_pred HHHHhCCCcEEEEecc
Confidence 99999999994
No 411
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=24.23 E-value=1.6e+02 Score=26.05 Aligned_cols=55 Identities=25% Similarity=0.282 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE--------------ecCCcc
Q 037554 8 NVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL--------------ARADAS 73 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I--------------AGAD~i 73 (173)
+-.+.++.|.++|+.-|.|.=.. ||. +.+...|+..++.-.+.+++. +|||+|
T Consensus 108 ~~~er~~~L~~agvD~ivID~a~-----g~s--------~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~v 174 (352)
T PF00478_consen 108 DDFERAEALVEAGVDVIVIDSAH-----GHS--------EHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAV 174 (352)
T ss_dssp CHHHHHHHHHHTT-SEEEEE-SS-----TTS--------HHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHHcCCCEEEccccC-----ccH--------HHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEE
Confidence 45678888999999999885321 232 334444555544433223222 999999
Q ss_pred cc
Q 037554 74 FV 75 (173)
Q Consensus 74 fv 75 (173)
-|
T Consensus 175 kV 176 (352)
T PF00478_consen 175 KV 176 (352)
T ss_dssp EE
T ss_pred EE
Confidence 87
No 412
>COG4531 ZnuA ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=24.05 E-value=3.9e+02 Score=23.30 Aligned_cols=59 Identities=14% Similarity=0.150 Sum_probs=38.0
Q ss_pred ecCCcccccCCCCHHHHhhhh-cCCCCCHHHHHhCCccEEEechHHHHHHHHHHHHHHHHHH
Q 037554 68 ARADASFVEAPRNDNEANWVW-GHTLHTPEELKAMGFHLTVHPLTALYASARALVDVLKTLK 128 (173)
Q Consensus 68 AGAD~ifv~g~~~~e~i~~i~-g~p~~~~~eL~~lGv~~v~~~~~~~~aa~~a~~~~~~~l~ 128 (173)
.||-|||.+-.-.+..++.+. |++. ..-+|--+|.+ |..+...+...+..+...+...+
T Consensus 257 ~~a~CvFaEPQF~Pkvve~v~~GT~v-r~g~LDPlg~~-i~lg~~sY~~fl~~lA~sy~~CL 316 (318)
T COG4531 257 QKATCVFAEPQFRPKVVETVAEGTSV-RSGTLDPLGTN-IKLGKDSYFNFLSNLANSYASCL 316 (318)
T ss_pred hCCcEEecCCCCchHHHHHHhcCCcc-ceeeeccCccc-ceeCcchHHHHHHHHHHHHHHHh
Confidence 789999987666788888774 6552 22345556765 44556666776666666555543
No 413
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=24.02 E-value=2.4e+02 Score=23.62 Aligned_cols=49 Identities=31% Similarity=0.336 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHH
Q 037554 9 VQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARD 58 (173)
Q Consensus 9 v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~ 58 (173)
+....+.-..+||.||.||=...|.+-- ..++.-++++++..-++.+++
T Consensus 211 ~~~~~~aAva~Ga~gl~iE~H~t~d~a~-~D~~~sl~p~~l~~lv~~i~~ 259 (260)
T TIGR01361 211 VIPLAKAAIAAGADGLMIEVHPDPEKAL-SDSKQQLTPEEFKRLVKELRA 259 (260)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCCccccC-CcchhcCCHHHHHHHHHHHhh
Confidence 3455667789999999999776655433 345667888888887776653
No 414
>PRK09284 thiamine biosynthesis protein ThiC; Provisional
Probab=23.99 E-value=88 Score=29.65 Aligned_cols=73 Identities=18% Similarity=0.032 Sum_probs=51.7
Q ss_pred CcccCHHHHHHHHHHHHHhcCCCCEEEecCCcccccCC-CCHHHHhhh---h-----c-CCC-------------CC---
Q 037554 41 KQIIPAEEHAAKIASARDAIGDSDFVLARADASFVEAP-RNDNEANWV---W-----G-HTL-------------HT--- 94 (173)
Q Consensus 41 ~~l~~~ee~~~kI~Aa~~a~~~~d~~IAGAD~ifv~g~-~~~e~i~~i---~-----g-~p~-------------~~--- 94 (173)
....++++=++|++.|.+ .|||.|+=-+. .+..++++- + | .|. +|
T Consensus 226 ~~~s~ieeEveK~~~A~~---------~GADtvMDLSTGgdi~~~R~~Il~~spvPvGTVPiYqA~~~~~~~~~~lt~e~ 296 (607)
T PRK09284 226 AVTSSIEEEVEKMVWATR---------WGADTVMDLSTGKNIHETREWILRNSPVPIGTVPIYQALEKVNGVAEDLTWEI 296 (607)
T ss_pred CCCCCHHHHHHHHHHHHH---------cCCCEEEecCCCCCHHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHH
Confidence 356789999999999876 69999984333 467777665 1 3 341 33
Q ss_pred ----HHHHHhCCccEEEechHHHHHHHHHHHH
Q 037554 95 ----PEELKAMGFHLTVHPLTALYASARALVD 122 (173)
Q Consensus 95 ----~~eL~~lGv~~v~~~~~~~~aa~~a~~~ 122 (173)
+++=++-||++++++....+..+.-+..
T Consensus 297 ~~d~ieeQAeqGVDf~TIHaGv~~~~v~~~~~ 328 (607)
T PRK09284 297 FRDTLIEQAEQGVDYFTIHAGVLLRYVPLTAK 328 (607)
T ss_pred HHHHHHHHHHhCCCEEEEChhhHHHHHHHHhC
Confidence 4555678999999998887776665543
No 415
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=23.92 E-value=2.3e+02 Score=23.49 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE---------ecCCcccccCC
Q 037554 8 NVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL---------ARADASFVEAP 78 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I---------AGAD~ifv~g~ 78 (173)
...+.++.+.+.|..+|-|-=+.. ++.+.+..-++++++. ...+++ -+||.+|++++
T Consensus 15 ~~~~~~~~~~~~gtdai~vGGS~~------------vt~~~~~~~v~~ik~~--~lPvilfp~~~~~i~~~aDa~l~~sv 80 (223)
T TIGR01768 15 EADEIAKAAAESGTDAILIGGSQG------------VTYEKTDTLIEALRRY--GLPIILFPSNPTNVSRDADALFFPSV 80 (223)
T ss_pred ccHHHHHHHHhcCCCEEEEcCCCc------------ccHHHHHHHHHHHhcc--CCCEEEeCCCccccCcCCCEEEEEEe
Confidence 345678889999999997754331 3334444444444432 234444 89999999986
No 416
>PLN02535 glycolate oxidase
Probab=23.72 E-value=2.4e+02 Score=25.05 Aligned_cols=19 Identities=16% Similarity=0.259 Sum_probs=13.3
Q ss_pred HHHhCCccEEEechHHHHH
Q 037554 97 ELKAMGFHLTVHPLTALYA 115 (173)
Q Consensus 97 eL~~lGv~~v~~~~~~~~a 115 (173)
..-.||.+.|.+|...+.+
T Consensus 295 KALalGA~aV~vGr~~l~~ 313 (364)
T PLN02535 295 KALALGAQAVLVGRPVIYG 313 (364)
T ss_pred HHHHcCCCEEEECHHHHhh
Confidence 4456788888888777665
No 417
>PRK06267 hypothetical protein; Provisional
Probab=23.64 E-value=3.5e+02 Score=23.48 Aligned_cols=17 Identities=18% Similarity=0.061 Sum_probs=8.7
Q ss_pred ccCHHHHHHHHHHHHHh
Q 037554 43 IIPAEEHAAKIASARDA 59 (173)
Q Consensus 43 l~~~ee~~~kI~Aa~~a 59 (173)
..+.++.+.-|.++|-.
T Consensus 217 ~~s~~e~lr~ia~~Rl~ 233 (350)
T PRK06267 217 SVTTLEYMNWVSSVRLN 233 (350)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 34555555555555544
No 418
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=23.50 E-value=1.5e+02 Score=25.33 Aligned_cols=67 Identities=21% Similarity=0.274 Sum_probs=36.2
Q ss_pred HHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcC--CCCEEEecCCcccccC--CCCHHHHhhh
Q 037554 13 VKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIG--DSDFVLARADASFVEA--PRNDNEANWV 87 (173)
Q Consensus 13 v~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~--~~d~~IAGAD~ifv~g--~~~~e~i~~i 87 (173)
.+.+.+|||.-|++-=...- -|...-+.-.+.++.+++++++.++.. +||+++ +.+| +.+++++..+
T Consensus 163 A~~M~~AGaDiiv~H~GlT~--gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~dii~------l~hGGPI~~p~D~~~~ 233 (268)
T PF09370_consen 163 ARAMAEAGADIIVAHMGLTT--GGSIGAKTALSLEEAAERIQEIFDAARAVNPDIIV------LCHGGPIATPEDAQYV 233 (268)
T ss_dssp HHHHHHHT-SEEEEE-SS------------S--HHHHHHHHHHHHHHHHCC-TT-EE------EEECTTB-SHHHHHHH
T ss_pred HHHHHHcCCCEEEecCCccC--CCCcCccccCCHHHHHHHHHHHHHHHHHhCCCeEE------EEeCCCCCCHHHHHHH
Confidence 45667999998875432211 011122457799999999999998853 688663 3343 3577777766
No 419
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=23.49 E-value=39 Score=30.41 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=18.6
Q ss_pred CHHHHHhCCccEEEechHHHHH
Q 037554 94 TPEELKAMGFHLTVHPLTALYA 115 (173)
Q Consensus 94 ~~~eL~~lGv~~v~~~~~~~~a 115 (173)
.++-|++.||+|||+|.+.+..
T Consensus 139 ~~~~l~~~GvNRiSlGVQsf~~ 160 (416)
T COG0635 139 KFKALKEAGVNRISLGVQSFND 160 (416)
T ss_pred HHHHHHHcCCCEEEeccccCCH
Confidence 4578999999999999888753
No 420
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=23.44 E-value=2.5e+02 Score=23.84 Aligned_cols=14 Identities=29% Similarity=0.413 Sum_probs=10.3
Q ss_pred HHHHHHHhCceEEE
Q 037554 12 TVKDLVAAGAAGCF 25 (173)
Q Consensus 12 tv~~~~~aGvagi~ 25 (173)
..|+|+++|+++|-
T Consensus 143 ~arrLee~GcaavM 156 (262)
T COG2022 143 LARRLEEAGCAAVM 156 (262)
T ss_pred HHHHHHhcCceEec
Confidence 35788888888874
No 421
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=23.33 E-value=3.2e+02 Score=22.36 Aligned_cols=132 Identities=8% Similarity=0.006 Sum_probs=70.6
Q ss_pred HHHHHHHHHHH-hCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE---------------ecCC
Q 037554 8 NVQRTVKDLVA-AGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL---------------ARAD 71 (173)
Q Consensus 8 ~v~rtv~~~~~-aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I---------------AGAD 71 (173)
+....++.|.+ .|+.-+||=|=..-+ .+|.. --+.+.+|...+ +..+.+ +|||
T Consensus 32 dp~~~a~~~~~~~Ga~~l~ivDLd~a~-~~~~~------n~~~I~~i~~~~----~~pi~vGGGIrs~e~v~~~l~~Ga~ 100 (234)
T PRK13587 32 SAEESIAYYSQFECVNRIHIVDLIGAK-AQHAR------EFDYIKSLRRLT----TKDIEVGGGIRTKSQIMDYFAAGIN 100 (234)
T ss_pred CHHHHHHHHHhccCCCEEEEEECcccc-cCCcc------hHHHHHHHHhhc----CCeEEEcCCcCCHHHHHHHHHCCCC
Confidence 34447888888 699999999975432 22221 124444444321 233555 8999
Q ss_pred cccccCC--CCHHHHhhhh---------------c----------C---CCCCHHHHHhCCccEEEechHHHHHHHHHH-
Q 037554 72 ASFVEAP--RNDNEANWVW---------------G----------H---TLHTPEELKAMGFHLTVHPLTALYASARAL- 120 (173)
Q Consensus 72 ~ifv~g~--~~~e~i~~i~---------------g----------~---p~~~~~eL~~lGv~~v~~~~~~~~aa~~a~- 120 (173)
-+.+... ++++.++++. + + |.--.+++.++|++.+++..-.--..+...
T Consensus 101 kvvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~ 180 (234)
T PRK13587 101 YCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPN 180 (234)
T ss_pred EEEECchHhcCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccC
Confidence 9987443 5777777660 1 0 011246778899999988754321111111
Q ss_pred HHHHHHHHHc-CCcccccccCCCHHHHHHhc
Q 037554 121 VDVLKTLKES-GTTRDHLEKMGTFEEFNQLV 150 (173)
Q Consensus 121 ~~~~~~l~~~-g~~~~~~~~~~~~~e~~~l~ 150 (173)
.+.++++.+. +..--..+...+.+++.+++
T Consensus 181 ~~li~~l~~~~~ipvi~~GGi~s~edi~~l~ 211 (234)
T PRK13587 181 FELTGQLVKATTIPVIASGGIRHQQDIQRLA 211 (234)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHH
Confidence 1122333322 22222334456777776654
No 422
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=23.30 E-value=3.2e+02 Score=24.75 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=13.6
Q ss_pred HHHHHHHHHhCceEEEe
Q 037554 10 QRTVKDLVAAGAAGCFL 26 (173)
Q Consensus 10 ~rtv~~~~~aGvagi~i 26 (173)
.+.++.++++||.+|-+
T Consensus 205 ~e~a~~l~~aGaD~I~v 221 (404)
T PRK06843 205 KEAALDLISVGADCLKV 221 (404)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 35667888999999985
No 423
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=23.21 E-value=3.5e+02 Score=24.73 Aligned_cols=72 Identities=15% Similarity=0.057 Sum_probs=50.2
Q ss_pred CcccCHHHHHHHHHHHHHhcCCCCEEEecCCcccccCC-CCHHHHhhh--h------c-CCC-------------CCHHH
Q 037554 41 KQIIPAEEHAAKIASARDAIGDSDFVLARADASFVEAP-RNDNEANWV--W------G-HTL-------------HTPEE 97 (173)
Q Consensus 41 ~~l~~~ee~~~kI~Aa~~a~~~~d~~IAGAD~ifv~g~-~~~e~i~~i--~------g-~p~-------------~~~~e 97 (173)
....++++=++|+++|.+ +|||.|+=-+. .+.+++++- + | .|. +|.++
T Consensus 71 ~~~~d~~~E~~K~~~A~~---------~GADtiMDLStGgdl~~iR~~il~~s~vpvGTVPiYqa~~~~~~~~~~mt~d~ 141 (423)
T TIGR00190 71 ADTSDIEEEVEKALIAIK---------YGADTVMDLSTGGDLDEIRKAILDAVPVPVGTVPIYQAAEKVHGAVEDMDEDD 141 (423)
T ss_pred CCCCCHHHHHHHHHHHHH---------cCCCeEeeccCCCCHHHHHHHHHHcCCCCccCccHHHHHHHhcCChhhCCHHH
Confidence 357789999999999987 69999984333 477777766 1 3 341 34444
Q ss_pred -------HHhCCccEEEechHHHHHHHHHHH
Q 037554 98 -------LKAMGFHLTVHPLTALYASARALV 121 (173)
Q Consensus 98 -------L~~lGv~~v~~~~~~~~aa~~a~~ 121 (173)
=.+-||++++++...-+..+..++
T Consensus 142 ~~~~ie~qa~dGVDfmTiH~Gi~~~~~~~~~ 172 (423)
T TIGR00190 142 MFRAIEKQAKDGVDFMTIHAGVLLEYVERLK 172 (423)
T ss_pred HHHHHHHHHHhCCCEEEEccchhHHHHHHHH
Confidence 456799999999887665555443
No 424
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=23.21 E-value=2.8e+02 Score=22.60 Aligned_cols=69 Identities=14% Similarity=0.113 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE---------------ecCCc
Q 037554 8 NVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL---------------ARADA 72 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I---------------AGAD~ 72 (173)
+..+.++.|.+.|+..|+|=|-.... .+++ .--+++.+|+... +..+.+ +|||.
T Consensus 31 d~~~~a~~~~~~G~~~i~i~dl~~~~-----~~~~--~~~~~i~~i~~~~----~ipv~~~GGi~s~~~~~~~l~~Ga~~ 99 (253)
T PRK02083 31 DPVELAKRYNEEGADELVFLDITASS-----EGRD--TMLDVVERVAEQV----FIPLTVGGGIRSVEDARRLLRAGADK 99 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccc-----ccCc--chHHHHHHHHHhC----CCCEEeeCCCCCHHHHHHHHHcCCCE
Confidence 55667788889999999999976411 1111 2234555554432 234444 89999
Q ss_pred ccccCC--CCHHHHhhh
Q 037554 73 SFVEAP--RNDNEANWV 87 (173)
Q Consensus 73 ifv~g~--~~~e~i~~i 87 (173)
|.+... .+++.+.++
T Consensus 100 Viigt~~l~~p~~~~ei 116 (253)
T PRK02083 100 VSINSAAVANPELISEA 116 (253)
T ss_pred EEEChhHhhCcHHHHHH
Confidence 877432 466666655
No 425
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=23.09 E-value=4.8e+02 Score=22.34 Aligned_cols=33 Identities=12% Similarity=-0.065 Sum_probs=26.2
Q ss_pred CHHHHHhCCccEEEechHHHHHHHHHHHHHHHH
Q 037554 94 TPEELKAMGFHLTVHPLTALYASARALVDVLKT 126 (173)
Q Consensus 94 ~~~eL~~lGv~~v~~~~~~~~aa~~a~~~~~~~ 126 (173)
.+....++|++-|-+++-+..+...++++.+.+
T Consensus 217 ~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~~~ 249 (286)
T PRK12738 217 FVRRTIELGVTKVNVATELKIAFAGAVKAWFAE 249 (286)
T ss_pred HHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHHh
Confidence 345556899999999999988888888887643
No 426
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=22.99 E-value=3.7e+02 Score=26.43 Aligned_cols=105 Identities=15% Similarity=0.029 Sum_probs=0.0
Q ss_pred ccCH--HHHHHHHHHHHHhcCCCCEEEecCCc--ccccCCCCHHHHhhh--------------h---c----CC--CCCH
Q 037554 43 IIPA--EEHAAKIASARDAIGDSDFVLARADA--SFVEAPRNDNEANWV--------------W---G----HT--LHTP 95 (173)
Q Consensus 43 l~~~--ee~~~kI~Aa~~a~~~~d~~IAGAD~--ifv~g~~~~e~i~~i--------------~---g----~p--~~~~ 95 (173)
+..+ +.+..-|+|+..+... +|++. |++|-+++.+|++++ + + +| ...+
T Consensus 611 l~~p~~~lf~~qlraI~rald~-----~G~~~~~ImvPmV~s~eEa~~~~~~~~~~g~~~~~~~~~vg~MIEtp~av~~~ 685 (795)
T PRK06464 611 LSESFREAFALECEAIKRVREE-----MGLTNVEVMIPFVRTVEEAEKVIELLAENGLKRGENGLKVIMMCEIPSNALLA 685 (795)
T ss_pred ccCchHHHHHHHHHHHHHHHHh-----cCCCCeEEEecCCCCHHHHHHHHHHHHHhCccccccCcEEEEEEcCHHHHHHH
Q ss_pred HHHHhCCccEEEechHHHH----------------------HHHHHHHHHHHHHHHcCCcccccccCC-C-HHHHHHhcC
Q 037554 96 EELKAMGFHLTVHPLTALY----------------------ASARALVDVLKTLKESGTTRDHLEKMG-T-FEEFNQLVN 151 (173)
Q Consensus 96 ~eL~~lGv~~v~~~~~~~~----------------------aa~~a~~~~~~~l~~~g~~~~~~~~~~-~-~~e~~~l~g 151 (173)
+++.+. ++.+++|+.=+. +...++.++.+..++.|..-.....+. + ...+..+++
T Consensus 686 deIa~~-vDfi~IGtnDLtq~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g~~vgicge~a~~~p~~~~~l~~ 764 (795)
T PRK06464 686 EEFLEY-FDGFSIGSNDLTQLTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAGKYVGICGQAPSDHPDFAEWLVE 764 (795)
T ss_pred HHHHHh-CCEEEECchHHHHHHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcCCEEEEcCCCCCCcHHHHHHHHH
Q ss_pred hh
Q 037554 152 LE 153 (173)
Q Consensus 152 ~~ 153 (173)
..
T Consensus 765 ~G 766 (795)
T PRK06464 765 EG 766 (795)
T ss_pred CC
No 427
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=22.53 E-value=4.6e+02 Score=22.29 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=30.7
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHH
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIA 54 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~ 54 (173)
|...+...++.+.+.|+.-|-.==...| +|...+....+..|+++-||
T Consensus 90 n~~~i~~~l~~~~~~Gi~~ilaLrGDpp--~g~~~~~~~~~s~dLv~lik 137 (291)
T COG0685 90 NRIEIISILKGAAALGIRNILALRGDPP--AGDKPGGKDLYSVDLVELIK 137 (291)
T ss_pred CHHHHHHHHHHHHHhCCceEEEecCCCC--CCCCCCccccCHHHHHHHHH
Confidence 5577888999999999998876544444 44333322445556665444
No 428
>cd03681 MM_CoA_mutase_MeaA Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, MeaA-like subfamily; contains various methylmalonyl coenzyme A (CoA) mutase (MCM)-like proteins similar to the Streptomyces cinnamonensis MeaA, Methylobacterium extorquens MeaA and Streptomyces collinus B12-dependent mutase. Members of this subfamily contain an N-terminal MCM domain and a C-terminal coenzyme B12 binding domain. S. cinnamonensis MeaA is a putative B12-dependent mutase which provides methylmalonyl-CoA precursors for the biosynthesis of the monensin polyketide via an unknown pathway. S. collinus B12-dependent mutase may be involved in a pathway for acetate assimilation.
Probab=22.31 E-value=2.1e+02 Score=25.96 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=25.0
Q ss_pred CCCCChHHHHHHHHHHHHhCceEEEec
Q 037554 1 TGGGNALNVQRTVKDLVAAGAAGCFLE 27 (173)
Q Consensus 1 tGyG~~~~v~rtv~~~~~aGvagi~iE 27 (173)
.|||+|.+.-+..+.+.+.|..|+++-
T Consensus 8 ~g~~t~ee~N~~~~~~L~~G~t~ls~a 34 (407)
T cd03681 8 AGHSTAEESNELYRKNLAKGQTGLSVA 34 (407)
T ss_pred cCCCCHHHHHHHHHHHHHCCCCeeEEe
Confidence 489999999999999999999999985
No 429
>PRK07094 biotin synthase; Provisional
Probab=22.06 E-value=3.9e+02 Score=22.50 Aligned_cols=44 Identities=16% Similarity=0.136 Sum_probs=29.6
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHH
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARD 58 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~ 58 (173)
++.++.+.++.+.+.|+..|.|-+...| ..+.+.+.+-++.+++
T Consensus 71 s~eei~~~~~~~~~~g~~~i~l~gG~~~----------~~~~~~l~~l~~~i~~ 114 (323)
T PRK07094 71 SPEEILECAKKAYELGYRTIVLQSGEDP----------YYTDEKIADIIKEIKK 114 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCC----------CCCHHHHHHHHHHHHc
Confidence 4678888899999999999999754322 2344555555555544
No 430
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=22.03 E-value=5.1e+02 Score=22.20 Aligned_cols=31 Identities=26% Similarity=0.169 Sum_probs=24.6
Q ss_pred HHHHHhCCccEEEechHHHHHHHHHHHHHHH
Q 037554 95 PEELKAMGFHLTVHPLTALYASARALVDVLK 125 (173)
Q Consensus 95 ~~eL~~lGv~~v~~~~~~~~aa~~a~~~~~~ 125 (173)
+.++.++|++-|-+.+-+..+.+.++++.+.
T Consensus 219 ~~~ai~~GI~KiNi~T~l~~a~~~~~~~~~~ 249 (286)
T PRK08610 219 IQKAIPFGTAKINVNTENQIASAKAVRDVLN 249 (286)
T ss_pred HHHHHHCCCeEEEeccHHHHHHHHHHHHHHH
Confidence 4455578999999998888888888887764
No 431
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=21.87 E-value=84 Score=25.35 Aligned_cols=82 Identities=17% Similarity=0.242 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHHHhcCCCCEEEecCCcccccCCCCHHHHhhh-h-cCCCCCHHHHHhCCccEEEec-hHHHHHHHHHHH
Q 037554 45 PAEEHAAKIASARDAIGDSDFVLARADASFVEAPRNDNEANWV-W-GHTLHTPEELKAMGFHLTVHP-LTALYASARALV 121 (173)
Q Consensus 45 ~~ee~~~kI~Aa~~a~~~~d~~IAGAD~ifv~g~~~~e~i~~i-~-g~p~~~~~eL~~lGv~~v~~~-~~~~~aa~~a~~ 121 (173)
+.+...+.|+-.... .|+.|+--.+.+...... ....- . ..|...++.|.++||+.++.+ ++.+-.-..++.
T Consensus 23 ~~~~~~~~v~~~~~~---~D~~~~NlE~~~~~~~~~--~~~~~~~f~~~~~~~~~L~~~G~d~~tlaNNH~fD~G~~gl~ 97 (239)
T cd07381 23 DFDPLFEDVKPLLRA---ADLAIGNLETPLTDKGSP--APSKYPHFRAPPEVADALKAAGFDVVSLANNHTLDYGEEGLL 97 (239)
T ss_pred CchhHHHHHHHHHhc---CCEEEEEeecCccCCCCc--CCCCceEecCCHHHHHHHHHhCCCEEEcccccccccchHHHH
Confidence 445566666655443 577775444444332211 00000 1 134446789999999999999 888877777888
Q ss_pred HHHHHHHHcC
Q 037554 122 DVLKTLKESG 131 (173)
Q Consensus 122 ~~~~~l~~~g 131 (173)
+.++.+.+.+
T Consensus 98 ~t~~~l~~~~ 107 (239)
T cd07381 98 DTLDALDEAG 107 (239)
T ss_pred HHHHHHHHcC
Confidence 8887777655
No 432
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=21.71 E-value=2.2e+02 Score=24.38 Aligned_cols=68 Identities=25% Similarity=0.276 Sum_probs=42.3
Q ss_pred ChHHHHHHHHHHHH-hCceEEEeccC----------------------CCCccCCCCCCCccc-CHHHHHHHHH-HHHHh
Q 037554 5 NALNVQRTVKDLVA-AGAAGCFLEDQ----------------------SWPKKCGHMHGKQII-PAEEHAAKIA-SARDA 59 (173)
Q Consensus 5 ~~~~v~rtv~~~~~-aGvagi~iEDq----------------------~~pKrcg~~~g~~l~-~~ee~~~kI~-Aa~~a 59 (173)
++.+..++..++.+ +|+.++-||=. ..|.++.++.|-++. .-++.++||. .|++.
T Consensus 91 s~~~a~~nA~r~~ke~gA~aVKlEGG~~~~~~i~~L~~~gIPV~gHiGLtPQ~v~~~GGykvqGr~~~~a~~l~~dA~al 170 (268)
T COG0413 91 SPEQALKNAARLMKEAGADAVKLEGGEEMAETIKRLTERGIPVMGHIGLTPQSVNWLGGYKVQGRTEESAEKLLEDAKAL 170 (268)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHcCCceEEEecCChhhhhccCCeeeecCCHHHHHHHHHHHHHH
Confidence 67777788877777 99999999986 124444444442222 2234444444 33332
Q ss_pred cCCCCEEEecCCcccccCC
Q 037554 60 IGDSDFVLARADASFVEAP 78 (173)
Q Consensus 60 ~~~~d~~IAGAD~ifv~g~ 78 (173)
+ + |||=++.++++
T Consensus 171 -e--~---AGaf~ivlE~V 183 (268)
T COG0413 171 -E--E---AGAFALVLECV 183 (268)
T ss_pred -H--h---cCceEEEEecc
Confidence 2 2 89999999886
No 433
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=21.56 E-value=88 Score=26.24 Aligned_cols=43 Identities=14% Similarity=0.095 Sum_probs=28.9
Q ss_pred CCCCCHHHHHhCCccEEEechHHHHHHH----HHHHHHHHHHHHcCC
Q 037554 90 HTLHTPEELKAMGFHLTVHPLTALYASA----RALVDVLKTLKESGT 132 (173)
Q Consensus 90 ~p~~~~~eL~~lGv~~v~~~~~~~~aa~----~a~~~~~~~l~~~g~ 132 (173)
|-.+|++-|+++|++.|+.|++=-|... ..+.+-.+..++.|.
T Consensus 74 TGevS~~mLkd~G~~~viiGHSERR~~f~Etd~~v~~K~~~a~~~gl 120 (250)
T PRK00042 74 TGEISAEMLKDLGVKYVIIGHSERRQYFGETDELVNKKVKAALKAGL 120 (250)
T ss_pred cCccCHHHHHHCCCCEEEeCcccccCccCcCHHHHHHHHHHHHHCCC
Confidence 4568999999999999999988755432 223333333555554
No 434
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=21.52 E-value=1.4e+02 Score=26.46 Aligned_cols=38 Identities=13% Similarity=0.097 Sum_probs=30.2
Q ss_pred ccccCCCCHHHHhhh--hc-------CCCC-CHHHHHhCCccEEEech
Q 037554 73 SFVEAPRNDNEANWV--WG-------HTLH-TPEELKAMGFHLTVHPL 110 (173)
Q Consensus 73 ifv~g~~~~e~i~~i--~g-------~p~~-~~~eL~~lGv~~v~~~~ 110 (173)
|.|+|.+|.+-++++ +| .|.. -.+.+-+.|+++|+++.
T Consensus 27 ilveg~~d~~~l~~lgi~g~~i~~s~~p~~~cad~ii~~gi~rVVi~~ 74 (360)
T PRK14719 27 ILVEGPNDILSLKNLKINANFITVSNTPVFQIADDLIAENISEVILLT 74 (360)
T ss_pred EEEEcchHHHHHHHcCCCCcEEEEeCCchHHHHHHHHHcCCCEEEEEE
Confidence 688999999999999 21 4543 45778889999999986
No 435
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=21.44 E-value=1.3e+02 Score=25.25 Aligned_cols=47 Identities=11% Similarity=0.036 Sum_probs=28.4
Q ss_pred HHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHh
Q 037554 10 QRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDA 59 (173)
Q Consensus 10 ~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a 59 (173)
.+-+++..++|+..|+|-+.+.+. |...+-=.+.++..+++..+++.
T Consensus 76 ~~dv~~A~~~g~~~i~i~~~~Sd~---~~~~~~~~s~~~~~~~~~~~v~~ 122 (274)
T cd07938 76 LRGAERALAAGVDEVAVFVSASET---FSQKNINCSIAESLERFEPVAEL 122 (274)
T ss_pred HHHHHHHHHcCcCEEEEEEecCHH---HHHHHcCCCHHHHHHHHHHHHHH
Confidence 345788889999999999887641 11111112456666665555444
No 436
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=21.40 E-value=5.2e+02 Score=22.09 Aligned_cols=31 Identities=16% Similarity=0.075 Sum_probs=24.9
Q ss_pred HHHHHhCCccEEEechHHHHHHHHHHHHHHH
Q 037554 95 PEELKAMGFHLTVHPLTALYASARALVDVLK 125 (173)
Q Consensus 95 ~~eL~~lGv~~v~~~~~~~~aa~~a~~~~~~ 125 (173)
+.+..++|++-|-+++-+..+...++++.+.
T Consensus 218 ~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~ 248 (284)
T PRK09195 218 IQQTIKLGICKVNVATELKIAFSQALKNYLT 248 (284)
T ss_pred HHHHHHcCCeEEEeCcHHHHHHHHHHHHHHH
Confidence 4555679999999999998888888877664
No 437
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=21.39 E-value=2.7e+02 Score=24.46 Aligned_cols=50 Identities=30% Similarity=0.308 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHH
Q 037554 8 NVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARD 58 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~ 58 (173)
-+....+.-..+||.|+.||=...|.+.- ..+.+-++++++..-++.++.
T Consensus 278 ~v~~~a~AAvA~GAdGliIE~H~~pd~al-sD~~~sl~p~e~~~lv~~i~~ 327 (335)
T PRK08673 278 LVEPLALAAVAAGADGLIVEVHPDPEKAL-SDGPQSLTPEEFEELMKKLRA 327 (335)
T ss_pred chHHHHHHHHHhCCCEEEEEecCCcccCC-CcchhcCCHHHHHHHHHHHHH
Confidence 34456677889999999999877776654 456666677766655544443
No 438
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=21.25 E-value=4.5e+02 Score=22.55 Aligned_cols=58 Identities=17% Similarity=0.201 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhCceEEEeccC--------CCC---ccCCCCCCCccc-CHHHHHHHHHHHHHhcCCCCEEE
Q 037554 8 NVQRTVKDLVAAGAAGCFLEDQ--------SWP---KKCGHMHGKQII-PAEEHAAKIASARDAIGDSDFVL 67 (173)
Q Consensus 8 ~v~rtv~~~~~aGvagi~iEDq--------~~p---Krcg~~~g~~l~-~~ee~~~kI~Aa~~a~~~~d~~I 67 (173)
+..+.+++..++|..||.|-=. ..| ||-.-..| .|. ...-..+.|++++++. ++||.|
T Consensus 150 ~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGG-slenR~rf~~EiI~aIR~av-G~d~~v 219 (338)
T cd04733 150 RFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGG-SLENRARLLLEIYDAIRAAV-GPGFPV 219 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCC-CHHHHHHHHHHHHHHHHHHc-CCCCeE
Confidence 4556677888899999987422 123 33223233 233 2334455677777665 345543
No 439
>PRK09389 (R)-citramalate synthase; Provisional
Probab=21.05 E-value=1.3e+02 Score=27.70 Aligned_cols=115 Identities=15% Similarity=0.025 Sum_probs=66.0
Q ss_pred HHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcC--CCCEEE---------------------
Q 037554 11 RTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIG--DSDFVL--------------------- 67 (173)
Q Consensus 11 rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~--~~d~~I--------------------- 67 (173)
+-++...++|+..|||-..+.+. |...+--.+.++..+++..+++... +.++.+
T Consensus 77 ~di~~a~~~g~~~v~i~~~~Sd~---h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~ 153 (488)
T PRK09389 77 VDIDAALECDVDSVHLVVPTSDL---HIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGI 153 (488)
T ss_pred HHHHHHHhCCcCEEEEEEccCHH---HHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHH
Confidence 44677788999999999887764 2222222467888888776665432 222222
Q ss_pred -ecCCcccccC---CCCHHHHhhh-----h--cCCC------------CCHHHHHhCCccEEEechHHH--HHHHHHHHH
Q 037554 68 -ARADASFVEA---PRNDNEANWV-----W--GHTL------------HTPEELKAMGFHLTVHPLTAL--YASARALVD 122 (173)
Q Consensus 68 -AGAD~ifv~g---~~~~e~i~~i-----~--g~p~------------~~~~eL~~lGv~~v~~~~~~~--~aa~~a~~~ 122 (173)
+|||.|.++- ..+|+++.++ . +.|+ -+.-.--+.|+++|-.....+ |+-..++..
T Consensus 154 ~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~Vd~Ti~GiGERaGNa~lE~ 233 (488)
T PRK09389 154 EAGADRICFCDTVGILTPEKTYELFKRLSELVKGPVSIHCHNDFGLAVANTLAALAAGADQVHVTINGIGERAGNASLEE 233 (488)
T ss_pred hCCCCEEEEecCCCCcCHHHHHHHHHHHHhhcCCeEEEEecCCccHHHHHHHHHHHcCCCEEEEEcccccccccCccHHH
Confidence 8999887643 3577776655 0 1110 122233467777776554443 344444555
Q ss_pred HHHHHH
Q 037554 123 VLKTLK 128 (173)
Q Consensus 123 ~~~~l~ 128 (173)
.+..|+
T Consensus 234 lv~~L~ 239 (488)
T PRK09389 234 VVMALK 239 (488)
T ss_pred HHHHHH
Confidence 555554
No 440
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=20.93 E-value=6.4e+02 Score=22.97 Aligned_cols=62 Identities=13% Similarity=0.119 Sum_probs=40.4
Q ss_pred ecCCcccccCC-----CCHHHHhhh-------hc-----CC--------CCCHHHHHhCC-ccEEEe-c------hHHHH
Q 037554 68 ARADASFVEAP-----RNDNEANWV-------WG-----HT--------LHTPEELKAMG-FHLTVH-P------LTALY 114 (173)
Q Consensus 68 AGAD~ifv~g~-----~~~e~i~~i-------~g-----~p--------~~~~~eL~~lG-v~~v~~-~------~~~~~ 114 (173)
+|||.+-+++. .+.+++.++ ++ .| ..-.+-+..+| .+.|.. | +....
T Consensus 310 aGaD~ih~~~~gg~~~~~~~~~~~~~~~~~~~~~~~k~~~Pv~SGG~~~~~~p~~~~~~G~~Dvil~~GGGi~gHP~G~a 389 (424)
T cd08208 310 AGLDVVIMPGFGPRMMTPEEEVLECVIACLEPMGPIKPCLPVPGGSDSALTLQTVYEKVGNVDFGFVPGRGVFGHPMGPK 389 (424)
T ss_pred cCCCeeeccCCCCCccchHHHHHHHHHHHhCcccCCCCceEecccCCCHhHHHHHHHHhCCCCEEEecCccccCCCCChH
Confidence 99999998773 345666555 11 12 22346677888 576643 2 33346
Q ss_pred HHHHHHHHHHHHHHH
Q 037554 115 ASARALVDVLKTLKE 129 (173)
Q Consensus 115 aa~~a~~~~~~~l~~ 129 (173)
+-.++++++++..++
T Consensus 390 aGa~A~RqA~ea~~~ 404 (424)
T cd08208 390 AGAKSIRQAWEAIEA 404 (424)
T ss_pred HHHHHHHHHHHHHHc
Confidence 788899999999874
No 441
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=20.71 E-value=5.2e+02 Score=23.43 Aligned_cols=38 Identities=16% Similarity=0.262 Sum_probs=26.5
Q ss_pred CHHHHHhCCccEEEec-------hHHHHHHHHHHHHHHHHHHHcC
Q 037554 94 TPEELKAMGFHLTVHP-------LTALYASARALVDVLKTLKESG 131 (173)
Q Consensus 94 ~~~eL~~lGv~~v~~~-------~~~~~aa~~a~~~~~~~l~~~g 131 (173)
-.+-+..+|-+.|... +....+-.+|++++.+...+..
T Consensus 349 ~p~~~~~~G~Dvil~~GGGi~gHP~G~~aGa~A~rqA~ea~~~g~ 393 (412)
T cd08213 349 VPDVIDILGKDIVIQVGGGVHGHPDGTRAGAKAVRQAIEAALEGI 393 (412)
T ss_pred HHHHHHHhCCceEEecCCceecCCCCchhHHHHHHHHHHHHHcCC
Confidence 4567788887765432 3444678889999999887543
No 442
>PRK05926 hypothetical protein; Provisional
Probab=20.68 E-value=1.7e+02 Score=25.87 Aligned_cols=60 Identities=13% Similarity=0.057 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhCceEEEec------cC----CCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEEecCCcccccCC
Q 037554 9 VQRTVKDLVAAGAAGCFLE------DQ----SWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVLARADASFVEAP 78 (173)
Q Consensus 9 v~rtv~~~~~aGvagi~iE------Dq----~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~IAGAD~ifv~g~ 78 (173)
..+.+++|-+||+.-++.- |. ..|++ .+.++.++-++.|.++- -.+. +| +||=++
T Consensus 168 ~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~---------~t~~e~l~~i~~a~~~G--i~~~-sg--mi~G~g- 232 (370)
T PRK05926 168 VKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAPGR---------LSSQGFLEIHKTAHSLG--IPSN-AT--MLCYHR- 232 (370)
T ss_pred HHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCCCC---------CCHHHHHHHHHHHHHcC--Cccc-Cc--eEEeCC-
Confidence 4667899999999887753 22 22433 35577777777777653 2211 44 777666
Q ss_pred CCHHH
Q 037554 79 RNDNE 83 (173)
Q Consensus 79 ~~~e~ 83 (173)
.+.++
T Consensus 233 Et~ed 237 (370)
T PRK05926 233 ETPED 237 (370)
T ss_pred CCHHH
Confidence 45444
No 443
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=20.68 E-value=4.3e+02 Score=22.80 Aligned_cols=53 Identities=23% Similarity=0.376 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHH---HHHHHHHHHh
Q 037554 6 ALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEH---AAKIASARDA 59 (173)
Q Consensus 6 ~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~---~~kI~Aa~~a 59 (173)
..=|--..+.-..+||.|+.||=...|.+ ....+.+.++++++ .+.|++..++
T Consensus 216 re~v~~larAAvA~GaDGl~iEvHpdP~~-AlsDg~q~l~~~~~~~l~~~l~~i~~~ 271 (281)
T PRK12457 216 RRQVLDLARAGMAVGLAGLFLEAHPDPDR-ARCDGPSALPLDQLEPFLSQVKALDDL 271 (281)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCccc-cCCCcccccCHHHHHHHHHHHHHHHHH
Confidence 34566778888999999999996665542 33456666666654 4555555544
No 444
>PRK08445 hypothetical protein; Provisional
Probab=20.63 E-value=1.4e+02 Score=26.05 Aligned_cols=41 Identities=22% Similarity=0.191 Sum_probs=29.3
Q ss_pred HHHHHHHHHhCceE---EEec-------cCCCCccCCCCCCCcccCHHHHHHHHHHHHHh
Q 037554 10 QRTVKDLVAAGAAG---CFLE-------DQSWPKKCGHMHGKQIIPAEEHAAKIASARDA 59 (173)
Q Consensus 10 ~rtv~~~~~aGvag---i~iE-------Dq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a 59 (173)
.+.+++|-+||+.- +.+| ++..||+ ++.+++.+-|+.|+++
T Consensus 144 ~e~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~---------~t~~~~i~~i~~a~~~ 194 (348)
T PRK08445 144 KEVLERLQAKGLSSIPGAGAEILSDRVRDIIAPKK---------LDSDRWLEVHRQAHLI 194 (348)
T ss_pred HHHHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCC---------CCHHHHHHHHHHHHHc
Confidence 57889999999984 4578 4555654 4567777777777765
No 445
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=20.62 E-value=2.1e+02 Score=24.62 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=27.4
Q ss_pred HHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE---------------ecCCcccc
Q 037554 13 VKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL---------------ARADASFV 75 (173)
Q Consensus 13 v~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I---------------AGAD~ifv 75 (173)
.+.++++|+.+|.+|=.-.. ||.. .++-+.-.....++.+++ ..++. .|||+|.+
T Consensus 149 A~~a~~~G~D~iv~qG~eAG---GH~g-~~~~~~~~L~~~v~~~~~----iPViaAGGI~dg~~iaaal~lGA~gV~~ 218 (330)
T PF03060_consen 149 ARKAAKAGADAIVAQGPEAG---GHRG-FEVGSTFSLLPQVRDAVD----IPVIAAGGIADGRGIAAALALGADGVQM 218 (330)
T ss_dssp HHHHHHTT-SEEEEE-TTSS---EE----SSG-HHHHHHHHHHH-S----S-EEEESS--SHHHHHHHHHCT-SEEEE
T ss_pred HHHhhhcCCCEEEEeccccC---CCCC-ccccceeeHHHHHhhhcC----CcEEEecCcCCHHHHHHHHHcCCCEeec
Confidence 46778899999998843322 5654 112244455545544433 33333 78888875
No 446
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=20.61 E-value=4.2e+02 Score=22.97 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=35.5
Q ss_pred ChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHH---HHHHHHHh
Q 037554 5 NALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAA---KIASARDA 59 (173)
Q Consensus 5 ~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~---kI~Aa~~a 59 (173)
...-|.-..+.-..+|+.|+.||=...|.+ ....+.+.++++++.. ++++..++
T Consensus 218 ~Re~V~~larAAvA~GaDGlfiEvHpdP~~-AlsDg~q~l~~~~l~~ll~~l~~i~~~ 274 (290)
T PLN03033 218 LRELIPCIARTAVAVGVDGIFMEVHDDPLS-APVDGPTQWPLRHLEELLEELIAIARV 274 (290)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEecCCccc-cCCCcccCcCHHHHHHHHHHHHHHHHH
Confidence 445677778888999999999996655542 2335666666666544 44444433
No 447
>PRK14567 triosephosphate isomerase; Provisional
Probab=20.49 E-value=97 Score=26.15 Aligned_cols=26 Identities=8% Similarity=0.013 Sum_probs=22.1
Q ss_pred CCCCCHHHHHhCCccEEEechHHHHH
Q 037554 90 HTLHTPEELKAMGFHLTVHPLTALYA 115 (173)
Q Consensus 90 ~p~~~~~eL~~lGv~~v~~~~~~~~a 115 (173)
|-.+|++-|+++|++.|+.|++=-|.
T Consensus 73 TGEvS~~mLkd~G~~yviiGHSERR~ 98 (253)
T PRK14567 73 TGEISARMLEDIGCDYLLIGHSERRS 98 (253)
T ss_pred cCcCCHHHHHHcCCCEEEECcccccC
Confidence 45689999999999999999877553
No 448
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=20.46 E-value=2.2e+02 Score=24.25 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=31.9
Q ss_pred ecCCcccccCCCCHHHHhhhh---c--CC--------CCCHHHHHhCCccEEEech
Q 037554 68 ARADASFVEAPRNDNEANWVW---G--HT--------LHTPEELKAMGFHLTVHPL 110 (173)
Q Consensus 68 AGAD~ifv~g~~~~e~i~~i~---g--~p--------~~~~~eL~~lGv~~v~~~~ 110 (173)
+|||.|.++. -++++++++. . .| .-++.++.+.|++.|+.+.
T Consensus 207 ~gaDyI~lD~-~~~e~l~~~~~~~~~~i~i~AiGGIt~~ni~~~a~~Gvd~IAvg~ 261 (277)
T PRK08072 207 AGADIIMFDN-RTPDEIREFVKLVPSAIVTEASGGITLENLPAYGGTGVDYISLGF 261 (277)
T ss_pred cCCCEEEECC-CCHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEECh
Confidence 8999999864 5778888772 1 22 1356889999999999985
No 449
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=20.35 E-value=2.1e+02 Score=24.20 Aligned_cols=43 Identities=23% Similarity=0.324 Sum_probs=31.3
Q ss_pred CCCEEEecCCcccccCCCCHHHHhhhhcCCCCCHHHHHhCCccEEEechHHHHH
Q 037554 62 DSDFVLARADASFVEAPRNDNEANWVWGHTLHTPEELKAMGFHLTVHPLTALYA 115 (173)
Q Consensus 62 ~~d~~IAGAD~ifv~g~~~~e~i~~i~g~p~~~~~eL~~lGv~~v~~~~~~~~a 115 (173)
..||+|+..|.. ..|. |.|....++|.++||+.++.|++.|..
T Consensus 30 ~~D~vIaNgEn~-~gG~----------Gi~~~~~~~L~~~GvDviT~GNH~~Dk 72 (266)
T TIGR00282 30 QADLVIANGENT-THGK----------GLTLKIYEFLKQSGVNYITMGNHTWFQ 72 (266)
T ss_pred CCCEEEEcCccc-CCCC----------CCCHHHHHHHHhcCCCEEEccchhccC
Confidence 468888766664 2221 234567899999999999999999853
No 450
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=20.30 E-value=3.1e+02 Score=22.34 Aligned_cols=91 Identities=20% Similarity=0.152 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCHHHHHHHHHHHHHhcCCCCEEE--------------ecCCccc
Q 037554 9 VQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPAEEHAAKIASARDAIGDSDFVL--------------ARADASF 74 (173)
Q Consensus 9 v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~ee~~~kI~Aa~~a~~~~d~~I--------------AGAD~if 74 (173)
..+-|+++.++|+.=|-|.=..-| ++ .+.++++.+|+.-- -++. +|+|+|=
T Consensus 53 T~~ev~~l~~aGadIIAlDaT~R~--------Rp-~~l~~li~~i~~~~------~l~MADist~ee~~~A~~~G~D~I~ 117 (192)
T PF04131_consen 53 TLKEVDALAEAGADIIALDATDRP--------RP-ETLEELIREIKEKY------QLVMADISTLEEAINAAELGFDIIG 117 (192)
T ss_dssp SHHHHHHHHHCT-SEEEEE-SSSS---------S-S-HHHHHHHHHHCT------SEEEEE-SSHHHHHHHHHTT-SEEE
T ss_pred CHHHHHHHHHcCCCEEEEecCCCC--------CC-cCHHHHHHHHHHhC------cEEeeecCCHHHHHHHHHcCCCEEE
Confidence 357789999999998888654332 34 78889988887421 2333 8888774
Q ss_pred cc------CC----CCHHHHhhhh--cCC------CCCH---HHHHhCCccEEEechHHHH
Q 037554 75 VE------AP----RNDNEANWVW--GHT------LHTP---EELKAMGFHLTVHPLTALY 114 (173)
Q Consensus 75 v~------g~----~~~e~i~~i~--g~p------~~~~---~eL~~lGv~~v~~~~~~~~ 114 (173)
.. .. .|.+.++++. +.| ..|+ .+.-++|..-|..|+..-|
T Consensus 118 TTLsGYT~~t~~~~pD~~lv~~l~~~~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAITr 178 (192)
T PF04131_consen 118 TTLSGYTPYTKGDGPDFELVRELVQADVPVIAEGRIHTPEQAAKALELGAHAVVVGSAITR 178 (192)
T ss_dssp -TTTTSSTTSTTSSHHHHHHHHHHHTTSEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH-
T ss_pred cccccCCCCCCCCCCCHHHHHHHHhCCCcEeecCCCCCHHHHHHHHhcCCeEEEECcccCC
Confidence 31 11 2345555552 223 1233 5666789888888876644
No 451
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.28 E-value=4e+02 Score=24.94 Aligned_cols=102 Identities=20% Similarity=0.143 Sum_probs=62.6
Q ss_pred CCCCChHHHHHHHHHHHHhCceEEEeccCCCCccCCCCCCCcccCH--HHHHHHHHHHHHhcCCCCEEEecCCcccccCC
Q 037554 1 TGGGNALNVQRTVKDLVAAGAAGCFLEDQSWPKKCGHMHGKQIIPA--EEHAAKIASARDAIGDSDFVLARADASFVEAP 78 (173)
Q Consensus 1 tGyG~~~~v~rtv~~~~~aGvagi~iEDq~~pKrcg~~~g~~l~~~--ee~~~kI~Aa~~a~~~~d~~IAGAD~ifv~g~ 78 (173)
||=|.....+..+..+-.-...=+.|||-+-=+--|... -++.+. =.|..-+|+.. |.|||+ |+|--+
T Consensus 267 TGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q-~qVN~k~gltfa~~LRa~L--RqDPDv-------ImVGEI 336 (500)
T COG2804 267 TGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQ-VQVNPKIGLTFARALRAIL--RQDPDV-------IMVGEI 336 (500)
T ss_pred CCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcce-eecccccCCCHHHHHHHHh--ccCCCe-------EEEecc
Confidence 566777888999999999999999999954210000000 000000 03566667665 457874 466667
Q ss_pred CCHHHHhhh---h--c----CC------CCCHHHHHhCCccEEEechHH
Q 037554 79 RNDNEANWV---W--G----HT------LHTPEELKAMGFHLTVHPLTA 112 (173)
Q Consensus 79 ~~~e~i~~i---~--g----~p------~~~~~eL~~lGv~~v~~~~~~ 112 (173)
+|.|..+-. . | +- .-.+..|.+|||..-.+..++
T Consensus 337 RD~ETAeiavqAalTGHLVlSTlHtnda~~ai~RL~~mGv~~~~l~s~l 385 (500)
T COG2804 337 RDLETAEIAVQAALTGHLVLSTLHTNDAPGAITRLLEMGVEPYLLASSL 385 (500)
T ss_pred CCHHHHHHHHHHHhcCCeEeeecccCchHHHHHHHHHcCCCHHHHHHHH
Confidence 888887655 1 3 11 124689999999865555444
Done!