BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037555
(298 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 106/260 (40%), Gaps = 44/260 (16%)
Query: 52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS---WKAMGRLQSHSLTVTQ 108
L GH NE+ S+ G L+A+ + +S +W+WEV ++ + L SH+ V
Sbjct: 101 LEGHENEVKSVAWAPSGNLLATCSRDKS-----VWVWEVDEEDEYECVSVLNSHTQDVKH 155
Query: 109 IRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFA 168
+ + LL S S D ++ + E D+ A E H+ +WS +++P G A
Sbjct: 156 VVWHPSQELLASASYDDTVKLYREE-----EDDWVCCATLEGHESTVWSLAFDPSGQRLA 210
Query: 169 TGSRDKTVKIW------------AVENKSSVKQILALPPFNS-SVTALSWVGLDRQKNHG 215
+ S D+TV+IW + S K I L F+S ++ ++W L G
Sbjct: 211 SCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT-----G 265
Query: 216 FLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPK 275
LA I ++ N S P T ++ H VN +AW E
Sbjct: 266 ALATACGDDAIRVFQEDPN-----SDPQQPTFSLTAHL--HQAHSQDVNCVAWNPKEP-- 316
Query: 276 NSRTMQLASCGADNTVRVFQ 295
LASC D V ++
Sbjct: 317 ----GLLASCSDDGEVAFWK 332
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Query: 85 IWLWEVGSWKAMGRL-QSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQ 143
IW E SW L + H TV ++ +S N L S S D ++ + D++
Sbjct: 42 IWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK-----KNQDDFE 96
Query: 144 LIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTAL 203
+ E H+ + S +W P G+ AT SRDK+V +W V+ + + + L V +
Sbjct: 97 CVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHV 156
Query: 204 SW 205
W
Sbjct: 157 VW 158
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 91/230 (39%), Gaps = 24/230 (10%)
Query: 68 GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF 127
G +AS A A IW ++ + L+ H V + ++ NLL + SRD+
Sbjct: 73 GNYLAS---ASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSV 129
Query: 128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSV 187
V+ + E +Y+ ++ +H + + W+P A+ S D TVK++ E V
Sbjct: 130 WVWEVDE----EDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWV 185
Query: 188 KQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWS--ISVNRTNDVSTPAPS 245
L S+V +L++ + LA + + +W + N + +
Sbjct: 186 C-CATLEGHESTVWSLAF-----DPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDP 239
Query: 246 TANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ 295
+ I F H + +AW T LA+ D+ +RVFQ
Sbjct: 240 SWKCICTLSGF--HSRTIYDIAW-------CQLTGALATACGDDAIRVFQ 280
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 144 LIARQEAH-KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTA 202
L+ R AH W +WNP G A+ D+ ++IW E S + + + +V
Sbjct: 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRK 66
Query: 203 LSW 205
++W
Sbjct: 67 VAW 69
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 15/152 (9%)
Query: 52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRF 111
L GH + S+ G+ +ASS +A I +W K + H L ++ + +
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASS-----SADKLIKIWGAYDGKFEKTISGHKLGISDVAW 97
Query: 112 SHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS 171
S D NLL+S S D+ ++ + + + + H ++ C++NP + +GS
Sbjct: 98 SSDSNLLVSASDDKTLKIWDVSSG-------KCLKTLKGHSNYVFCCNFNPQSNLIVSGS 150
Query: 172 RDKTVKIWAVENKSSVKQILALPPFNSSVTAL 203
D++V+IW V+ +K LP + V+A+
Sbjct: 151 FDESVRIWDVKTGKCLK---TLPAHSDPVSAV 179
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 141 DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQI 190
+Y L H + + S ++P G A+ S DK +KIW + K I
Sbjct: 36 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 85
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 77 AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
A S+A I +W K + H L ++ + +S D NLL+S S D+ ++ +
Sbjct: 45 ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG- 103
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF 196
+ + + H ++ C++NP + +GS D++V+IW V+ +K LP
Sbjct: 104 ------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAH 154
Query: 197 NSSVTAL 203
+ V+A+
Sbjct: 155 SDPVSAV 161
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 141 DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQI 190
+Y L H + + S ++P G A+ S DK +KIW + K I
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 67
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 77 AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
A S+A I +W K + H L ++ + +S D NLL+S S D+ ++ +
Sbjct: 42 ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG- 100
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF 196
+ + + H ++ C++NP + +GS D++V+IW V+ +K LP
Sbjct: 101 ------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAH 151
Query: 197 NSSVTAL 203
+ V+A+
Sbjct: 152 SDPVSAV 158
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 133 QRTGTG----EIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVK 188
Q+ G G + +Y L H + + S ++P G A+ S DK +KIW + K
Sbjct: 3 QQMGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 189 QI 190
I
Sbjct: 63 TI 64
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 77 AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
A S+A I +W K + H L ++ + +S D NLL+S S D+ ++ +
Sbjct: 42 ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG- 100
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF 196
+ + + H ++ C++NP + +GS D++V+IW V+ +K LP
Sbjct: 101 ------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAH 151
Query: 197 NSSVTAL 203
+ V+A+
Sbjct: 152 SDPVSAV 158
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 133 QRTGTG----EIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVK 188
Q+ G G + +Y L H + + S ++P G A+ S DK +KIW + K
Sbjct: 3 QQMGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 189 QI 190
I
Sbjct: 63 TI 64
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 77 AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
A S+A I +W K + H L ++ + +S D NLL+S S D+ ++ +
Sbjct: 38 ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG- 96
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF 196
+ + + H ++ C++NP + +GS D++V+IW V+ +K LP
Sbjct: 97 ------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAH 147
Query: 197 NSSVTAL 203
+ V+A+
Sbjct: 148 SDPVSAV 154
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 141 DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQI 190
+Y L H + + S ++P G A+ S DK +KIW + K I
Sbjct: 11 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 60
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 77 AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
A S+A I +W K + H L ++ + +S D NLL+S S D+ ++ +
Sbjct: 35 ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG- 93
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF 196
+ + + H ++ C++NP + +GS D++V+IW V+ +K LP
Sbjct: 94 ------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAH 144
Query: 197 NSSVTAL 203
+ V+A+
Sbjct: 145 SDPVSAV 151
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 141 DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQI 190
+Y L H + + S ++P G A+ S DK +KIW + K I
Sbjct: 8 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 57
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 15/152 (9%)
Query: 52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRF 111
L GH + S+ G+ +ASS +A I +W K + H L ++ + +
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASS-----SADKLIKIWGAYDGKFEKTISGHKLGISDVAW 95
Query: 112 SHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS 171
S D NLL+S S D+ ++ + + + + H ++ C++NP + +GS
Sbjct: 96 SSDSNLLVSASDDKTLKIWDVSSG-------KCLKTLKGHSNYVFCCNFNPQSNLIVSGS 148
Query: 172 RDKTVKIWAVENKSSVKQILALPPFNSSVTAL 203
D++V+IW V+ +K LP + V+A+
Sbjct: 149 FDESVRIWDVKTGKCLK---TLPAHSDPVSAV 177
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 141 DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQI 190
+Y L H + + S ++P G A+ S DK +KIW + K I
Sbjct: 34 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 83
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 77 AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
A S+A I +W K + H L ++ + +S D NLL+S S D+ ++ +
Sbjct: 45 ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG- 103
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF 196
+ + + H ++ C++NP + +GS D++V+IW V+ +K LP
Sbjct: 104 ------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAH 154
Query: 197 NSSVTAL 203
+ V+A+
Sbjct: 155 SDPVSAV 161
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 141 DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQI 190
+Y L H + + S ++P G A+ S DK +KIW + K I
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 67
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 77 AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
A S+A I +W K + H L ++ + +S D NLL+S S D+ ++ +
Sbjct: 44 ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG- 102
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF 196
+ + + H ++ C++NP + +GS D++V+IW V+ +K LP
Sbjct: 103 ------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAH 153
Query: 197 NSSVTAL 203
+ V+A+
Sbjct: 154 SDPVSAV 160
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 141 DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQI 190
+Y L H + + S ++P G A+ S DK +KIW + K I
Sbjct: 17 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 66
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 77 AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
A S+A I +W K + H L ++ + +S D NLL+S S D+ ++ +
Sbjct: 45 ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG- 103
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF 196
+ + + H ++ C++NP + +GS D++V+IW V+ +K LP
Sbjct: 104 ------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAH 154
Query: 197 NSSVTAL 203
+ V+A+
Sbjct: 155 SDPVSAV 161
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 141 DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQI 190
+Y L H + + S ++P G A+ S DK +KIW + K I
Sbjct: 18 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 67
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 77 AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
A S+A I +W K + H L ++ + +S D NLL+S S D+ ++ +
Sbjct: 40 ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG- 98
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF 196
+ + + H ++ C++NP + +GS D++V+IW V+ +K LP
Sbjct: 99 ------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAH 149
Query: 197 NSSVTAL 203
+ V+A+
Sbjct: 150 SDPVSAV 156
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 141 DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQI 190
+Y L H + + S ++P G A+ S DK +KIW + K I
Sbjct: 13 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 62
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 77 AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
A S+A I +W K + H L ++ + +S D NLL+S S D+ ++ +
Sbjct: 39 ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG- 97
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF 196
+ + + H ++ C++NP + +GS D++V+IW V+ +K LP
Sbjct: 98 ------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAH 148
Query: 197 NSSVTAL 203
+ V+A+
Sbjct: 149 SDPVSAV 155
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 141 DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQI 190
+Y L H + + S ++P G A+ S DK +KIW + K I
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 61
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 77 AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
A S+A I +W K + H L ++ + +S D NLL+S S D+ ++ +
Sbjct: 39 ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG- 97
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF 196
+ + + H ++ C++NP + +GS D++V+IW V+ +K LP
Sbjct: 98 ------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAH 148
Query: 197 NSSVTAL 203
+ V+A+
Sbjct: 149 SDPVSAV 155
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 141 DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQI 190
+Y L H + + S ++P G A+ S DK +KIW + K I
Sbjct: 12 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 61
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 77 AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
A S+A I +W K + H L ++ + +S D NLL+S S D+ ++ +
Sbjct: 56 ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG- 114
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF 196
+ + + H ++ C++NP + +GS D++V+IW V+ +K LP
Sbjct: 115 ------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAH 165
Query: 197 NSSVTAL 203
+ V+A+
Sbjct: 166 SDPVSAV 172
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 141 DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQI 190
+Y L H + + S ++P G A+ S DK +KIW + K I
Sbjct: 29 NYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 78
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 12/142 (8%)
Query: 47 PESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTV 106
PE + L GH + + + ++ S A A ++W +E G ++ L+ H+ +V
Sbjct: 99 PEKYALSGHRSPVTRVIFHPVFSVMVS---ASEDATIKVWDYETGDFERT--LKGHTDSV 153
Query: 107 TQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHE 166
I F H LL S S D ++ Q ++ I H + S S P G
Sbjct: 154 QDISFDHSGKLLASCSADMTIKLWDFQ-------GFECIRTMHGHDHNVSSVSIMPNGDH 206
Query: 167 FATGSRDKTVKIWAVENKSSVK 188
+ SRDKT+K+W V+ VK
Sbjct: 207 IVSASRDKTIKMWEVQTGYCVK 228
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 70/185 (37%), Gaps = 60/185 (32%)
Query: 52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRF 111
L GH + + + DH GKL+AS C A T I LW+ ++ + + H V+ +
Sbjct: 146 LKGHTDSVQDISFDHSGKLLAS-CSADMT----IKLWDFQGFECIRTMHGHDHNVSSVSI 200
Query: 112 SHDDNLLLSVSRDRQFSVFAIQ-----RTGTGEIDYQLIARQEAHKRIIWSCS------- 159
+ + ++S SRD+ ++ +Q +T TG ++ + R +I SCS
Sbjct: 201 MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 260
Query: 160 -----------------------WNPF--------------------GHEFATGSRDKTV 176
W P G +GSRDKT+
Sbjct: 261 WVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTI 320
Query: 177 KIWAV 181
K+W V
Sbjct: 321 KMWDV 325
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 85 IWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQL 144
I +W+V + + L H V + F +LS + D+ V+ + + +
Sbjct: 320 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK-------NKRC 372
Query: 145 IARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIW 179
+ AH+ + S ++ TGS D+TVK+W
Sbjct: 373 MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/198 (20%), Positives = 71/198 (35%), Gaps = 38/198 (19%)
Query: 99 LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC 158
L H VT++ F ++++S S D V+ + TG+ + L + H +
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE---TGDFERTL----KGHTDSVQDI 156
Query: 159 SWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLA 218
S++ G A+ S D T+K+W + ++ + SSV+ + N +
Sbjct: 157 SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP--------NGDHIV 208
Query: 219 VGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSR 278
I++W + C W +P
Sbjct: 209 SASRDKTIKMWEVQTG----------------------YCVKTFTGHREWVRMVRPNQDG 246
Query: 279 TMQLASCGADNTVRVFQV 296
T+ +ASC D TVRV+ V
Sbjct: 247 TL-IASCSNDQTVRVWVV 263
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 15/113 (13%)
Query: 117 LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTV 176
LLS SRD+ ++ + TG L+ H + ++ G + + DKT+
Sbjct: 310 FLLSGSRDKTIKMWDV---STGMCLMTLVG----HDNWVRGVLFHSGGKFILSCADDKTL 362
Query: 177 KIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELW 229
++W +NK +K + A F +S LD K ++ G +++W
Sbjct: 363 RVWDYKNKRCMKTLNAHEHFVTS--------LDFHKTAPYVVTGSVDQTVKVW 407
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 77 AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
A S+A I +W K + H L ++ + +S D NLL+S S D+ ++ +
Sbjct: 42 AASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG- 100
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF 196
+ + + H ++ C++NP + +GS D++V+IW V+ +K LP
Sbjct: 101 ------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAH 151
Query: 197 NSSVTAL 203
+ V+A+
Sbjct: 152 SDPVSAV 158
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 133 QRTGTG----EIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVK 188
Q+ G G + +Y L H + + S ++P G A S DK +KIW + K
Sbjct: 3 QQMGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEK 62
Query: 189 QI 190
I
Sbjct: 63 TI 64
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 77 AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
A S+A I +W K + H L ++ + +S D NLL+S S D+ ++ +
Sbjct: 42 ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG- 100
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF 196
+ + + H ++ C++NP + +GS D++V+IW V+ +K LP
Sbjct: 101 ------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLK---TLPAH 151
Query: 197 NSSVTAL 203
+ V+A+
Sbjct: 152 SDPVSAV 158
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 141 DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQI 190
+Y L+ H + + S ++P G A+ S DK +KIW + K I
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 64
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 77 AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
A S+A I +W K + H L ++ + +S D NLL+S S D+ ++ +
Sbjct: 42 ASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG- 100
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF 196
+ + + H ++ C++NP + +GS D++V+IW V+ +K LP
Sbjct: 101 ------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLK---TLPAH 151
Query: 197 NSSVTAL 203
+ V+A+
Sbjct: 152 SDPVSAV 158
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 141 DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQI 190
+Y L+ H + + S ++P G A+ S DK +KIW + K I
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI 64
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 14/128 (10%)
Query: 52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRF 111
L GH + ++ + G+ +AS+ ++ + LW + + L HS +V + F
Sbjct: 53 LTGHSSSVWGVAFSPDGQTIASASDDKT-----VKLWNRNG-QLLQTLTGHSSSVRGVAF 106
Query: 112 SHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS 171
S D + S S D+ ++ R G QL+ H +W +++P G A+ S
Sbjct: 107 SPDGQTIASASDDKTVKLW--NRNG------QLLQTLTGHSSSVWGVAFSPDGQTIASAS 158
Query: 172 RDKTVKIW 179
DKTVK+W
Sbjct: 159 DDKTVKLW 166
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 94 KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKR 153
K RL++HS +V + FS D + S S D+ ++ R G QL+ H
Sbjct: 7 KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLW--NRNG------QLLQTLTGHSS 58
Query: 154 IIWSCSWNPFGHEFATGSRDKTVKIW 179
+W +++P G A+ S DKTVK+W
Sbjct: 59 SVWGVAFSPDGQTIASASDDKTVKLW 84
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 80/187 (42%), Gaps = 19/187 (10%)
Query: 1 AYAATRETVERHGNDG--LDTLESVPDAVPAVFTEPPIEDQLAWHTLWPESHKLYGHGNE 58
A A+ +TV+ +G L TL +V V P +DQ ++ KL+ +
Sbjct: 401 ASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSP--DDQTIASASDDKTVKLWNRNGQ 458
Query: 59 LFSLCCDHQGKL--VASSCKAQSTAAAE----IWLWEVGSWKAMGRLQSHSLTVTQIRFS 112
L H + VA S Q+ A+A + LW + + L HS +V + FS
Sbjct: 459 LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFS 517
Query: 113 HDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR 172
D + S S D+ ++ R G QL+ H +W +++P G A+ S
Sbjct: 518 PDGQTIASASDDKTVKLW--NRNG------QLLQTLTGHSSSVWGVAFSPDGQTIASASS 569
Query: 173 DKTVKIW 179
DKTVK+W
Sbjct: 570 DKTVKLW 576
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 15/135 (11%)
Query: 51 KLYGHGNELFSLCCDHQGKL--VASSCKAQSTAAAE----IWLWEVGSWKAMGRLQSHSL 104
KL+ +L H + VA S Q+ A+A + LW + + L HS
Sbjct: 82 KLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSS 140
Query: 105 TVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG 164
+V + FS D + S S D+ ++ R G QL+ H +W +++P G
Sbjct: 141 SVWGVAFSPDGQTIASASDDKTVKLW--NRNG------QLLQTLTGHSSSVWGVAFSPDG 192
Query: 165 HEFATGSRDKTVKIW 179
A+ S DKTVK+W
Sbjct: 193 QTIASASDDKTVKLW 207
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 15/135 (11%)
Query: 51 KLYGHGNELFSLCCDHQGKL--VASSCKAQSTAAAE----IWLWEVGSWKAMGRLQSHSL 104
KL+ +L H + VA S Q+ A+A + LW + + L HS
Sbjct: 205 KLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSS 263
Query: 105 TVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG 164
+V + F D + S S D+ ++ R G QL+ H +W +++P G
Sbjct: 264 SVNGVAFRPDGQTIASASDDKTVKLW--NRNG------QLLQTLTGHSSSVWGVAFSPDG 315
Query: 165 HEFATGSRDKTVKIW 179
A+ S DKTVK+W
Sbjct: 316 QTIASASDDKTVKLW 330
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 14/128 (10%)
Query: 52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRF 111
L GH + + + G+ +AS+ ++ + LW + + L HS +V + F
Sbjct: 258 LTGHSSSVNGVAFRPDGQTIASASDDKT-----VKLWNRNG-QLLQTLTGHSSSVWGVAF 311
Query: 112 SHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS 171
S D + S S D+ ++ R G Q + H +W +++P G A+ S
Sbjct: 312 SPDGQTIASASDDKTVKLW--NRNG------QHLQTLTGHSSSVWGVAFSPDGQTIASAS 363
Query: 172 RDKTVKIW 179
DKTVK+W
Sbjct: 364 DDKTVKLW 371
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 14/128 (10%)
Query: 52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRF 111
L GH + ++ + G+ +AS+ ++ + LW + + L HS +V + F
Sbjct: 299 LTGHSSSVWGVAFSPDGQTIASASDDKT-----VKLWNRNG-QHLQTLTGHSSSVWGVAF 352
Query: 112 SHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS 171
S D + S S D+ ++ R G QL+ H + +++P G A+ S
Sbjct: 353 SPDGQTIASASDDKTVKLW--NRNG------QLLQTLTGHSSSVRGVAFSPDGQTIASAS 404
Query: 172 RDKTVKIW 179
DKTVK+W
Sbjct: 405 DDKTVKLW 412
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 21/189 (11%)
Query: 50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQI 109
+L GH + + + G+ S + E+ LW++ + + R H+ V +
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSG-----SWDGELRLWDLAAGVSTRRFVGHTKDVLSV 478
Query: 110 RFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC---SWNPFGHE 166
FS D+ ++S SRDR ++ GE Y + E H+ + SC S N
Sbjct: 479 AFSLDNRQIVSASRDRTIKLW----NTLGECKYTISEGGEGHRDWV-SCVRFSPNTLQPT 533
Query: 167 FATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVI 226
+ S DKTVK+W + N ++ LA S A+S + A G + GV+
Sbjct: 534 IVSASWDKTVKVWNLSN-CKLRSTLAGHTGYVSTVAVS-------PDGSLCASGGKDGVV 585
Query: 227 ELWSISVNR 235
LW ++ +
Sbjct: 586 LLWDLAEGK 594
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 26/167 (15%)
Query: 68 GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF 127
GK + SS + ++W W+ G + LQ+H TV R D LL S S D
Sbjct: 1022 GKTLISS---SEDSVIQVWNWQTGDYVF---LQAHQETVKDFRLLQDSRLL-SWSFDGTV 1074
Query: 128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSV 187
V+ + TG E D+ H+ + SC+ + +F++ S DKT KIW+ + S +
Sbjct: 1075 KVWNV-ITGRIERDFT------CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL 1127
Query: 188 KQILALPPFNSSV--TALSWVGLDRQKNHGFLAVGMESGVIELWSIS 232
+ L N V +A S G+ LA G ++G I +W++S
Sbjct: 1128 HE---LKGHNGCVRCSAFSLDGI-------LLATGDDNGEIRIWNVS 1164
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 79/205 (38%), Gaps = 38/205 (18%)
Query: 94 KAMGRL--QSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH 151
K + RL + H+ V FS D + S D+ VF + TG +D + AH
Sbjct: 611 KNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAE-TGEKLLDIK------AH 663
Query: 152 KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQ 211
+ + C+++ AT S DK VKIW + ++ K + + V + +
Sbjct: 664 EDEVLCCAFSSDDSYIATCSADKKVKIW---DSATGKLVHTYDEHSEQVNCCHFTN---K 717
Query: 212 KNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTH 271
NH LA G ++LW ++ + ++ N RF P
Sbjct: 718 SNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVN-HCRFSP---------------- 760
Query: 272 EKPKNSRTMQLASCGADNTVRVFQV 296
LASC AD T+R++ V
Sbjct: 761 ------DDELLASCSADGTLRLWDV 779
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 87 LWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAI----QRTGTGEIDY 142
LW++ + + H+ +V RFS DD LL S S D ++ + +R +
Sbjct: 734 LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRF 793
Query: 143 QLIARQ--EAHKRIIWSCSWNPFGHEFATGSRDKTV 176
L + E + I+ CSW+ G + +++K +
Sbjct: 794 FLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL 829
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 56/146 (38%), Gaps = 10/146 (6%)
Query: 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH 113
H +E+ LCC S A +A ++ +W+ + K + HS V F++
Sbjct: 662 AHEDEV--LCCAFSSD---DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTN 716
Query: 114 DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD 173
N LL + F + E + H + C ++P A+ S D
Sbjct: 717 KSNHLLLATGSNDF-FLKLWDLNQKECRNTMF----GHTNSVNHCRFSPDDELLASCSAD 771
Query: 174 KTVKIWAVENKSSVKQILALPPFNSS 199
T+++W V + + K I F SS
Sbjct: 772 GTLRLWDVRSANERKSINVKRFFLSS 797
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 26/167 (15%)
Query: 68 GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF 127
GK + SS + ++W W+ G + LQ+H TV R D LL S S D
Sbjct: 1015 GKTLISS---SEDSVIQVWNWQTGDYVF---LQAHQETVKDFRLLQDSRLL-SWSFDGTV 1067
Query: 128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSV 187
V+ + TG E D+ H+ + SC+ + +F++ S DKT KIW+ + S +
Sbjct: 1068 KVWNV-ITGRIERDFT------CHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPL 1120
Query: 188 KQILALPPFNSSV--TALSWVGLDRQKNHGFLAVGMESGVIELWSIS 232
+ L N V +A S G+ LA G ++G I +W++S
Sbjct: 1121 HE---LKGHNGCVRCSAFSLDGI-------LLATGDDNGEIRIWNVS 1157
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 79/205 (38%), Gaps = 38/205 (18%)
Query: 94 KAMGRL--QSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH 151
K + RL + H+ V FS D + S D+ VF + TG +D + AH
Sbjct: 604 KNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAE-TGEKLLDIK------AH 656
Query: 152 KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQ 211
+ + C+++ AT S DK VKIW + ++ K + + V + +
Sbjct: 657 EDEVLCCAFSSDDSYIATCSADKKVKIW---DSATGKLVHTYDEHSEQVNCCHFTN---K 710
Query: 212 KNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTH 271
NH LA G ++LW ++ + ++ N RF P
Sbjct: 711 SNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVN-HCRFSP---------------- 753
Query: 272 EKPKNSRTMQLASCGADNTVRVFQV 296
LASC AD T+R++ V
Sbjct: 754 ------DDELLASCSADGTLRLWDV 772
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 87 LWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAI----QRTGTGEIDY 142
LW++ + + H+ +V RFS DD LL S S D ++ + +R +
Sbjct: 727 LWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRF 786
Query: 143 QLIARQ--EAHKRIIWSCSWNPFGHEFATGSRDKTV 176
L + E + I+ CSW+ G + +++K +
Sbjct: 787 FLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL 822
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 56/146 (38%), Gaps = 10/146 (6%)
Query: 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH 113
H +E+ LCC S A +A ++ +W+ + K + HS V F++
Sbjct: 655 AHEDEV--LCCAFSSD---DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTN 709
Query: 114 DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD 173
N LL + F + E + H + C ++P A+ S D
Sbjct: 710 KSNHLLLATGSNDF-FLKLWDLNQKECRNTMF----GHTNSVNHCRFSPDDELLASCSAD 764
Query: 174 KTVKIWAVENKSSVKQILALPPFNSS 199
T+++W V + + K I F SS
Sbjct: 765 GTLRLWDVRSANERKSINVKRFFLSS 790
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Query: 87 LWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSV-FAIQRTGTGEIDYQLI 145
L+ GS +L H +TQ++++ + +LL S S+D SV +++ G +D
Sbjct: 16 LYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLD---- 71
Query: 146 ARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSV 187
H IWS + F TGS D ++K+W V N V
Sbjct: 72 ----GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCV 109
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 85 IWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVF-AIQRTGTGEIDYQ 143
+ ++E +K H+ V +R++ D +L S D ++ + T TG +
Sbjct: 172 VAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD 231
Query: 144 LIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAV 181
+ + AH ++ +W+P G + A+ S DKT+KIW V
Sbjct: 232 SL-KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV 268
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 71/162 (43%), Gaps = 14/162 (8%)
Query: 52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAA----AEIWLWEV-GSWKAMGRLQSHSLTV 106
+Y HG +L + + VA S Q A +++ ++++ G+ + + H +
Sbjct: 436 IYSHG-KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 494
Query: 107 TQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQE--AHKRIIWSCSWNPFG 164
T + FS++ L++ + R+ +++ +++L H + SW+P
Sbjct: 495 TSVAFSNNGAFLVATDQSRKVIPYSVAN------NFELAHTNSWTFHTAKVACVSWSPDN 548
Query: 165 HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWV 206
ATGS D +V +W + S I+ SSV ++ W+
Sbjct: 549 VRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL 590
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 98 RLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWS 157
RL+ HS V+ + S++ N +S S D ++ +Q G+ Y+ + H + + S
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQ---NGQCQYKFLG----HTKDVLS 114
Query: 158 CSWNPFGHEFATGSRDKTVKIWAVENK 184
+++P + +G RD +++W V+ +
Sbjct: 115 VAFSPDNRQIVSGGRDNALRVWNVKGE 141
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRF 111
L GH N + S+ G L ASS K LW++ +A+ + + + + QI F
Sbjct: 192 LKGHTNYVTSVTVSPDGSLCASSDKDGVAR-----LWDLTKGEALSEMAAGA-PINQICF 245
Query: 112 SHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC---SWNPFGHEFA 168
S + + + ++ +F ++ +I +L + K+I+ C +W+ G
Sbjct: 246 S-PNRYWMCAATEKGIRIFDLENK---DIIVELAPEHQGSKKIVPECVSIAWSADGSTLY 301
Query: 169 TGSRDKTVKIWAV 181
+G D +++W V
Sbjct: 302 SGYTDNVIRVWGV 314
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 70/184 (38%), Gaps = 21/184 (11%)
Query: 51 KLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIR 110
+L GH + + + G S+ S + LW + + + + H+ V +
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHS-----LRLWNLQNGQCQYKFLGHTKDVLSVA 116
Query: 111 FSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF--GHEFA 168
FS D+ ++S RD V+ ++ GE + L + AH + ++P
Sbjct: 117 FSPDNRQIVSGGRDNALRVWNVK----GECMHTL--SRGAHTDWVSCVRFSPSLDAPVIV 170
Query: 169 TGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIEL 228
+G D VK+W + V + + +SVT + A + GV L
Sbjct: 171 SGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTV--------SPDGSLCASSDKDGVARL 222
Query: 229 WSIS 232
W ++
Sbjct: 223 WDLT 226
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 30/150 (20%), Positives = 64/150 (42%), Gaps = 13/150 (8%)
Query: 50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQI 109
+K GH ++ S+ + + S + A +W + + R +H+ V+ +
Sbjct: 103 YKFLGHTKDVLSVAFSPDNRQIVSGGRDN---ALRVWNVKGECMHTLSR-GAHTDWVSCV 158
Query: 110 RFSH--DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEF 167
RFS D +++S D V+ + TG +L+ + H + S + +P G
Sbjct: 159 RFSPSLDAPVIVSGGWDNLVKVWDL---ATG----RLVTDLKGHTNYVTSVTVSPDGSLC 211
Query: 168 ATGSRDKTVKIWAVENKSSVKQILALPPFN 197
A+ +D ++W + ++ ++ A P N
Sbjct: 212 ASSDKDGVARLWDLTKGEALSEMAAGAPIN 241
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 28/181 (15%)
Query: 102 HSLTVTQIRF-SHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW 160
H + +++F D NLLLSVS+D ++ IQ I E H+ + S +
Sbjct: 113 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI----FGGVEGHRDEVLSADY 168
Query: 161 NPFGHEFATGSRDKTVKIWAVE-------------------NKSSVKQILALPPFNSSVT 201
+ G + + D ++K+W + N+ + Q + P F++
Sbjct: 169 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDI 228
Query: 202 ALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIII--RFDPFACH 259
++V R L+ E+ ++ W +D+ PS +N+ I RFD C
Sbjct: 229 HRNYVDCVRWLGDLILSKSCENAIV-CWKPG-KMEDDIDKIKPSESNVTILGRFDYSQCD 286
Query: 260 V 260
+
Sbjct: 287 I 287
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 28/181 (15%)
Query: 102 HSLTVTQIRF-SHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW 160
H + +++F D NLLLSVS+D ++ IQ I E H+ + S +
Sbjct: 150 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI----FGGVEGHRDEVLSADY 205
Query: 161 NPFGHEFATGSRDKTVKIWAVE-------------------NKSSVKQILALPPFNSSVT 201
+ G + + D ++K+W + N+ + Q + P F++
Sbjct: 206 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDI 265
Query: 202 ALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIII--RFDPFACH 259
++V R L+ E+ ++ W +D+ PS +N+ I RFD C
Sbjct: 266 HRNYVDCVRWLGDLILSKSCENAIV-CWKPG-KMEDDIDKIKPSESNVTILGRFDYSQCD 323
Query: 260 V 260
+
Sbjct: 324 I 324
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 28/181 (15%)
Query: 102 HSLTVTQIRF-SHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW 160
H + +++F D NLLLSVS+D ++ IQ I E H+ + S +
Sbjct: 113 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI----FGGVEGHRDEVLSADY 168
Query: 161 NPFGHEFATGSRDKTVKIWAVE-------------------NKSSVKQILALPPFNSSVT 201
+ G + + D ++K+W + N+ + Q + P F++
Sbjct: 169 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDI 228
Query: 202 ALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIII--RFDPFACH 259
++V R L+ E+ ++ W +D+ PS +N+ I RFD C
Sbjct: 229 HRNYVDCVRWLGDLILSKSCENAIV-CWKPG-KMEDDIDKIKPSESNVTILGRFDYSQCD 286
Query: 260 V 260
+
Sbjct: 287 I 287
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 28/181 (15%)
Query: 102 HSLTVTQIRF-SHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW 160
H + +++F D NLLLSVS+D ++ IQ I E H+ + S +
Sbjct: 109 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI----FGGVEGHRDEVLSADY 164
Query: 161 NPFGHEFATGSRDKTVKIWAVE-------------------NKSSVKQILALPPFNSSVT 201
+ G + + D ++K+W + N+ + Q + P F++
Sbjct: 165 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDI 224
Query: 202 ALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIII--RFDPFACH 259
++V R L+ E+ ++ W +D+ PS +N+ I RFD C
Sbjct: 225 HRNYVDCVRWLGDLILSKSCENAIV-CWKPG-KMEDDIDKIKPSESNVTILGRFDYSQCD 282
Query: 260 V 260
+
Sbjct: 283 I 283
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 28/181 (15%)
Query: 102 HSLTVTQIRF-SHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW 160
H + +++F D NLLLSVS+D ++ IQ I E H+ + S +
Sbjct: 114 HGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAI----FGGVEGHRDEVLSADY 169
Query: 161 NPFGHEFATGSRDKTVKIWAVE-------------------NKSSVKQILALPPFNSSVT 201
+ G + + D ++K+W + N+ + Q + P F++
Sbjct: 170 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDI 229
Query: 202 ALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIII--RFDPFACH 259
++V R L+ E+ ++ W +D+ PS +N+ I RFD C
Sbjct: 230 HRNYVDCVRWLGDLILSKSCENAIV-CWKPG-KMEDDIDKIKPSESNVTILGRFDYSQCD 287
Query: 260 V 260
+
Sbjct: 288 I 288
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 101 SHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW 160
S L + + FS D L + + DR ++ I+ + +++ + H++ I+S +
Sbjct: 121 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE-------NRKIVMILQGHEQDIYSLDY 173
Query: 161 NPFGHEFATGSRDKTVKIW 179
P G + +GS D+TV+IW
Sbjct: 174 FPSGDKLVSGSGDRTVRIW 192
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 155 IWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSW 205
I S ++P G ATG+ D+ ++IW +EN+ K ++ L + +L +
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENR---KIVMILQGHEQDIYSLDY 173
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 16/160 (10%)
Query: 52 LYGHGNELFSLCCDHQG-KLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIR 110
L GH +++SL G KLV+ S + +W++ + + L T
Sbjct: 161 LQGHEQDIYSLDYFPSGDKLVSGS------GDRTVRIWDLRTGQCSLTLSIEDGVTTVAV 214
Query: 111 FSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEA---HKRIIWSCSWNPFGHEF 167
D + + S DR V+ + TG + +L + E+ HK ++S + G
Sbjct: 215 SPGDGKYIAAGSLDRAVRVWDSE---TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV 271
Query: 168 ATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG 207
+GS D++VK+W ++N ++ K P NS ++++G
Sbjct: 272 VSGSLDRSVKLWNLQNANN-KSDSKTP--NSGTCEVTYIG 308
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 111 FSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATG 170
F +L + S DR+ + +++ ID + + AHK+ I S +W P A G
Sbjct: 20 FDFSQGILATGSTDRKIKLVSVKYDDFTLID---VLDETAHKKAIRSVAWRPHTSLLAAG 76
Query: 171 SRDKTVKIWAVENKS 185
S D TV IWA E +
Sbjct: 77 SFDSTVSIWAKEESA 91
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 101 SHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW 160
+H + + + +LL + S D S++A + + + L+A E H+ + +W
Sbjct: 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW 115
Query: 161 NPFGHEFATGSRDKTVKIWAV-ENKSSVKQILALPPFNSSVTALSW 205
+ G+ AT SRDK+V IW E+ + I L + V + W
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIW 161
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 96 MGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRII 155
+ ++ H V + +S+D L + SRD+ ++ +G +Y+ I+ + H + +
Sbjct: 100 LAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGE---EYECISVLQEHSQDV 156
Query: 156 WSCSWNPFGHEFATGSRDKTVKIW 179
W+P A+ S D TV+IW
Sbjct: 157 KHVIWHPSEALLASSSYDDTVRIW 180
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 84/232 (36%), Gaps = 64/232 (27%)
Query: 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS----WKAMGRLQSHSLTVTQI 109
GH NE+ + + G +A+ + +S +W+WE ++ + LQ HS V +
Sbjct: 105 GHENEVKGVAWSNDGYYLATCSRDKS-----VWIWETDESGEEYECISVLQEHSQDVKHV 159
Query: 110 RFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEF-- 167
+ + LL S S D ++ + D++ +A H+ +WS ++ F
Sbjct: 160 IWHPSEALLASSSYDDTVRIWK-----DYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRL 214
Query: 168 ATGSRDKTVKIWAVENKSSVKQ----ILALPP-------------FNSSVTALSWVGL-- 208
+GS D TV++W Q A+ P FN + ++ G+
Sbjct: 215 CSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLA 274
Query: 209 -------------DRQKNHG----------------FLAVGMESGVIELWSI 231
R HG LA G + G++ WS+
Sbjct: 275 VYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 75/199 (37%), Gaps = 36/199 (18%)
Query: 93 WKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHK 152
W + L+ H+ VT I ++ D N +++ DR V+ ++ G +I R
Sbjct: 42 WVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLK--GRTWKPTLVILRINRAA 99
Query: 153 RIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSS---VKQILALPPFNSSVTALSWVGLD 209
R + W P +FA GS + + I E ++ K I P S+V +L W
Sbjct: 100 RCV---RWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI--KKPIRSTVLSLDW---- 150
Query: 210 RQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFA------------ 257
N LA G ++S + + P P + + PF
Sbjct: 151 -HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM-----PFGELMFESSSSCGW 204
Query: 258 ----CHVAAVNRMAWKTHE 272
C A +R+AW +H+
Sbjct: 205 VHGVCFSANGSRVAWVSHD 223
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
Query: 77 AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
A T++AE+ LW+V K + + SHS V + + + +L S SR ++
Sbjct: 174 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVR--- 228
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIW 179
+ +A H + + W P G A+G D V +W
Sbjct: 229 ---VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 268
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 9/113 (7%)
Query: 99 LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC 158
L HS V +R++ D L S D +V+ G + Q + + + + C
Sbjct: 237 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 296
Query: 159 SWNPFGHEFATGSRDKTVKIW---------AVENKSSVKQILALPPFNSSVTA 202
W G+ D+ ++IW AV+ S V IL P + ++
Sbjct: 297 PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISG 349
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 22/166 (13%)
Query: 104 LTVTQIRFSHDDNLL-------LSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIW 156
L +IR + NL+ L+V+ D +++ +G+I QL+ + E I
Sbjct: 108 LDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWS---ASSGDI-LQLL-QMEQPGEYIS 162
Query: 157 SCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGF 216
S +W G+ A G+ V++W V+ + K++ + ++ V +LSW N
Sbjct: 163 SVAWIKEGNYLAVGTSSAEVQLWDVQQQ---KRLRNMTSHSARVGSLSW-------NSYI 212
Query: 217 LAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAA 262
L+ G SG I + V + + S +R+ P H+A+
Sbjct: 213 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLAS 258
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
Query: 77 AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
A T++AE+ LW+V K + + SHS V + + + +L S SR ++
Sbjct: 163 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVR--- 217
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIW 179
+ +A H + + W P G A+G D V +W
Sbjct: 218 ---VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 9/113 (7%)
Query: 99 LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC 158
L HS V +R++ D L S D +V+ G + Q + + + + C
Sbjct: 226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 285
Query: 159 SWNPFGHEFATGSRDKTVKIW---------AVENKSSVKQILALPPFNSSVTA 202
W G+ D+ ++IW AV+ S V IL P + ++
Sbjct: 286 PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISG 338
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 22/166 (13%)
Query: 104 LTVTQIRFSHDDNLL-------LSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIW 156
L +IR + NL+ L+V+ D +++ +G+I QL+ + E I
Sbjct: 97 LDAPEIRNDYYLNLVDWSSGNVLAVALDNSVYLWS---ASSGDI-LQLL-QMEQPGEYIS 151
Query: 157 SCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGF 216
S +W G+ A G+ V++W V+ + K++ + ++ V +LSW N
Sbjct: 152 SVAWIKEGNYLAVGTSSAEVQLWDVQQQ---KRLRNMTSHSARVGSLSW-------NSYI 201
Query: 217 LAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAA 262
L+ G SG I + V + + S +R+ P H+A+
Sbjct: 202 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLAS 247
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 75/199 (37%), Gaps = 36/199 (18%)
Query: 93 WKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHK 152
W + L+ H+ VT + ++ D N +++ DR V+ ++ G +I R
Sbjct: 42 WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK--GRTWKPTLVILRINRAA 99
Query: 153 RIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSS---VKQILALPPFNSSVTALSWVGLD 209
R + W P +FA GS + + I E ++ K I P S+V +L W
Sbjct: 100 RCV---RWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI--KKPIRSTVLSLDW---- 150
Query: 210 RQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFA------------ 257
N LA G ++S + + P P + + PF
Sbjct: 151 -HPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM-----PFGELMFESSSSCGW 204
Query: 258 ----CHVAAVNRMAWKTHE 272
C A +R+AW +H+
Sbjct: 205 VHGVCFSANGSRVAWVSHD 223
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 75/195 (38%), Gaps = 36/195 (18%)
Query: 99 LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC 158
++ H+ V FS D + S D+ VF + TGE ++ +AH+ + C
Sbjct: 617 VRPHTDAVYHACFSEDGQRIASCGADKTLQVF---KAETGEKLLEI----KAHEDEVLCC 669
Query: 159 SWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLA 218
+++ AT S DK VKIW N + + + + V + +H LA
Sbjct: 670 AFSTDDRFIATCSVDKKVKIW---NSMTGELVHTYDEHSEQVNCCHFTN---SSHHLLLA 723
Query: 219 VGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSR 278
G ++LW ++ R F H +VN + +K
Sbjct: 724 TGSSDCFLKLWDLNQKEC---------------RNTMFG-HTNSVNHCRFSPDDKL---- 763
Query: 279 TMQLASCGADNTVRV 293
LASC AD T+++
Sbjct: 764 ---LASCSADGTLKL 775
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 66/156 (42%), Gaps = 27/156 (17%)
Query: 81 AAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI 140
A ++W W++ L+ H TV R + LL S S D V+ I TG E
Sbjct: 1031 AEIQVWNWQLDKCIF---LRGHQETVKDFRLLKNSRLL-SWSFDGTVKVWNI-ITGNKEK 1085
Query: 141 DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF---- 196
D+ H+ + SC + +F++ S DKT KIW+ + L LP
Sbjct: 1086 DFV------CHQGTVLSCDISHDATKFSSTSADKTAKIWSFD--------LLLPLHELRG 1131
Query: 197 NSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSIS 232
++ S +D LA G ++G I +W++S
Sbjct: 1132 HNGCVRCSAFSVDST----LLATGDDNGEIRIWNVS 1163
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Query: 87 LWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVF----AIQRTGTG--EI 140
LW++ + + H+ +V RFS DD LL S S D ++ A +R +
Sbjct: 733 LWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQF 792
Query: 141 DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDK 174
L QE + I+ CSW+ G +++K
Sbjct: 793 FLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNK 826
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
Query: 77 AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
A T++AE+ LW+V K + + SHS V + + + +L S SR ++
Sbjct: 83 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVR--- 137
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIW 179
+ +A H + + W P G A+G D V +W
Sbjct: 138 ---VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 9/113 (7%)
Query: 99 LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC 158
L HS V +R++ D L S D +V+ G + Q + + + + C
Sbjct: 146 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 205
Query: 159 SWNPFGHEFATGSRDKTVKIW---------AVENKSSVKQILALPPFNSSVTA 202
W G+ D+ ++IW AV+ S V IL P + ++
Sbjct: 206 PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISG 258
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 65/145 (44%), Gaps = 15/145 (10%)
Query: 118 LLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVK 177
+L+V+ D +++ +G+I QL+ + E I S +W G+ A G+ V+
Sbjct: 38 VLAVALDNSVYLWS---ASSGDI-LQLL-QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQ 92
Query: 178 IWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTN 237
+W V+ + K++ + ++ V +LSW N L+ G SG I + V +
Sbjct: 93 LWDVQQQ---KRLRNMTSHSARVGSLSW-------NSYILSSGSRSGHIHHHDVRVAEHH 142
Query: 238 DVSTPAPSTANIIIRFDPFACHVAA 262
+ S +R+ P H+A+
Sbjct: 143 VATLSGHSQEVCGLRWAPDGRHLAS 167
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 60/268 (22%), Positives = 111/268 (41%), Gaps = 57/268 (21%)
Query: 51 KLYGHGNELFSLCCDHQ--GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRL-------QS 101
+L GH E + L + G L+++S I LW++ + G++
Sbjct: 172 RLRGHQKEGYGLSWNPNLSGHLLSASDDHT------ICLWDISAVPKEGKVVDAKTIFTG 225
Query: 102 HSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW 160
H+ V + + ++L SV+ D++ ++ + T + + + +AH + S+
Sbjct: 226 HTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSV----DAHTAEVNCLSF 281
Query: 161 NPFGHEF--ATGSRDKTVKIWAVEN--------KSSVKQILAL--PPFNSSVTALSWVGL 208
NP+ EF ATGS DKTV +W + N +S +I + P N ++ A S G
Sbjct: 282 NPYS-EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS--GT 338
Query: 209 DRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAW 268
DR+ N V +L I ++ + + P I H A ++ +W
Sbjct: 339 DRRLN-----------VWDLSKIGEEQSPEDAEDGPPELLFI-----HGGHTAKISDFSW 382
Query: 269 KTHEKPKNSRTMQLASCGADNTVRVFQV 296
+E + S DN ++V+Q+
Sbjct: 383 NPNEP------WVICSVSEDNIMQVWQM 404
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 14/146 (9%)
Query: 79 STAAAEIWLWEV--GSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136
+TA ++ L+E WK H VT + ++ N +++ S+DR V+ + G
Sbjct: 29 TTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG 88
Query: 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSS--VKQILALP 194
T + L+ A + WS P +FA GS + + + E ++ V + L
Sbjct: 89 TWKQTLVLLRLNRAATFVRWS----PNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR- 143
Query: 195 PFNSSVTALSWVGLDRQKNHGFLAVG 220
P S++ +L W N+ LA G
Sbjct: 144 PLRSTILSLDW-----HPNNVLLAAG 164
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 151 HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR 210
H +I+ W P + T S+D+ ++ + KQ L L N + T + W
Sbjct: 54 HDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRW----- 108
Query: 211 QKNHGFLAVGMESGVIEL 228
N AVG + VI +
Sbjct: 109 SPNEDKFAVGSGARVISV 126
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 67/140 (47%), Gaps = 15/140 (10%)
Query: 51 KLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEV-GSWK-AMGRLQSHSLTVTQ 108
+ GH +E++S+ + + S+ A EI LW + G K + ++HS V+
Sbjct: 113 RFVGHQSEVYSVAFSPDNRQILSA-----GAEREIKLWNILGECKFSSAEKENHSDWVSC 167
Query: 109 IRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI-----DYQLIARQEAHKRIIWSCSWNPF 163
+R+S ++ S ++ + F+ + G + ++Q+ +AH+ + S +P
Sbjct: 168 VRYSP---IMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPN 224
Query: 164 GHEFATGSRDKTVKIWAVEN 183
G ATG +DK + IW + N
Sbjct: 225 GKYIATGGKDKKLLIWDILN 244
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 99 LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC 158
+ HS V + D LS S D+ ++ + TGE YQ R HK + S
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV---ATGET-YQ---RFVGHKSDVMSV 113
Query: 159 SWNPFGHEFATGSRDKTVKIWAVENK 184
+ +GSRDKT+K+W ++ +
Sbjct: 114 DIDKKASMIISGSRDKTIKVWTIKGQ 139
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
Query: 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH 113
GH + + +L G L+AS+ K EI LW + + KAM L + V + FS
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKD-----GEIMLWNLAAKKAMYTLSAQD-EVFSLAFSP 247
Query: 114 DDNLLLSVSRDRQFSVFAIQ-RTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR 172
+ L+ + VF++ + ++ + A + S +W+ G G
Sbjct: 248 N-RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYT 306
Query: 173 DKTVKIWAV 181
D +++W V
Sbjct: 307 DNVIRVWQV 315
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 29/151 (19%), Positives = 61/151 (40%), Gaps = 14/151 (9%)
Query: 87 LWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIA 146
LW+V + + R H V + ++++S SRD+ V+ I+ G+ L+
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK----GQCLATLLG 146
Query: 147 RQE--AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALS 204
+ + R++ + + + DK VK W N + + NS++ L+
Sbjct: 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW---NLNQFQIEADFIGHNSNINTLT 203
Query: 205 WVGLDRQKNHGFLAVGMESGVIELWSISVNR 235
+ +A + G I LW+++ +
Sbjct: 204 -----ASPDGTLIASAGKDGEIMLWNLAAKK 229
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 99 LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC 158
+ HS V + D LS S D+ ++ + TGE YQ R HK + S
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV---ATGET-YQ---RFVGHKSDVMSV 113
Query: 159 SWNPFGHEFATGSRDKTVKIWAVENK 184
+ +GSRDKT+K+W ++ +
Sbjct: 114 DIDKKASMIISGSRDKTIKVWTIKGQ 139
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 8/129 (6%)
Query: 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH 113
GH + + +L G L+AS+ K EI LW + + KAM L + V + FS
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKD-----GEIMLWNLAAKKAMYTLSAQD-EVFSLAFSP 247
Query: 114 DDNLLLSVSRDRQFSVFAIQ-RTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR 172
+ L+ + VF++ + ++ + +A + S +W+ G G
Sbjct: 248 N-RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 306
Query: 173 DKTVKIWAV 181
D +++W V
Sbjct: 307 DNVIRVWQV 315
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 37/186 (19%)
Query: 51 KLYGHGNELFSLC--CDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRL-------QS 101
+L GH E + L + G L+++S + LW++ + G++
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHT------VCLWDINAGPKEGKIVDAKAIFTG 227
Query: 102 HSLTVTQI--RFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS 159
HS V + H+ +L SV+ D++ ++ + T + + + +AH + S
Sbjct: 228 HSAVVEDVAWHLLHE-SLFGSVADDQKLXIWDTRSNTTSKPSHLV----DAHTAEVNCLS 282
Query: 160 WNPFGHEF--ATGSRDKTVKIWAVEN--------KSSVKQILAL--PPFNSSVTALSWVG 207
+NP+ EF ATGS DKTV +W + N +S +I + P N ++ A S G
Sbjct: 283 FNPYS-EFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASS--G 339
Query: 208 LDRQKN 213
DR+ N
Sbjct: 340 TDRRLN 345
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 13/123 (10%)
Query: 49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK-AMGRLQSHSLTVT 107
SH + H E+ L + + + ++ A T A LW++ + K + +SH +
Sbjct: 268 SHLVDAHTAEVNCLSFNPYSEFILATGSADKTVA----LWDLRNLKLKLHTFESHKDEIF 323
Query: 108 QIRFS-HDDNLLLSVSRDRQFSVFAIQRTGTGEIDY-------QLIARQEAHKRIIWSCS 159
Q+ +S H++ +L S DR+ +V+ + + G + +L+ H I S
Sbjct: 324 QVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFS 383
Query: 160 WNP 162
WNP
Sbjct: 384 WNP 386
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 99 LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC 158
+ HS V + D LS S D+ ++ + TGE YQ R HK + S
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV---ATGET-YQ---RFVGHKSDVMSV 113
Query: 159 SWNPFGHEFATGSRDKTVKIWAVENK 184
+ +GSRDKT+K+W ++ +
Sbjct: 114 DIDKKASMIISGSRDKTIKVWTIKGQ 139
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 8/129 (6%)
Query: 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH 113
GH + + +L G L+AS+ K EI LW + + KAM L + V + FS
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKD-----GEIMLWNLAAKKAMYTLSAQD-EVFSLAFSP 247
Query: 114 DDNLLLSVSRDRQFSVFAIQ-RTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR 172
+ L+ + VF++ + ++ + +A + S +W+ G G
Sbjct: 248 N-RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 306
Query: 173 DKTVKIWAV 181
D +++W V
Sbjct: 307 DNVIRVWQV 315
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 29/151 (19%), Positives = 61/151 (40%), Gaps = 14/151 (9%)
Query: 87 LWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIA 146
LW+V + + R H V + ++++S SRD+ V+ I+ G+ L+
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK----GQCLATLLG 146
Query: 147 RQE--AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALS 204
+ + R++ + + + DK VK W N + + NS++ L+
Sbjct: 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW---NLNQFQIEADFIGHNSNINTLT 203
Query: 205 WVGLDRQKNHGFLAVGMESGVIELWSISVNR 235
+ +A + G I LW+++ +
Sbjct: 204 -----ASPDGTLIASAGKDGEIMLWNLAAKK 229
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 99 LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC 158
+ HS V + D LS S D+ ++ + TGE YQ R HK + S
Sbjct: 55 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV---ATGET-YQ---RFVGHKSDVMSV 107
Query: 159 SWNPFGHEFATGSRDKTVKIWAVENK 184
+ +GSRDKT+K+W ++ +
Sbjct: 108 DIDKKASMIISGSRDKTIKVWTIKGQ 133
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 8/129 (6%)
Query: 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH 113
GH + + +L G L+AS+ K EI LW + + KAM L + V + FS
Sbjct: 188 GHNSNINTLTASPDGTLIASAGKD-----GEIMLWNLAAKKAMYTLSAQD-EVFSLAFSP 241
Query: 114 DDNLLLSVSRDRQFSVFAIQ-RTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR 172
+ L+ + VF++ + ++ + +A + S +W+ G G
Sbjct: 242 N-RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 300
Query: 173 DKTVKIWAV 181
D +++W V
Sbjct: 301 DNVIRVWQV 309
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 29/151 (19%), Positives = 61/151 (40%), Gaps = 14/151 (9%)
Query: 87 LWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIA 146
LW+V + + R H V + ++++S SRD+ V+ I+ G+ L+
Sbjct: 85 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK----GQCLATLLG 140
Query: 147 RQE--AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALS 204
+ + R++ + + + DK VK W N + + NS++ L+
Sbjct: 141 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW---NLNQFQIEADFIGHNSNINTLT 197
Query: 205 WVGLDRQKNHGFLAVGMESGVIELWSISVNR 235
+ +A + G I LW+++ +
Sbjct: 198 -----ASPDGTLIASAGKDGEIMLWNLAAKK 223
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 114 DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD 173
DD +S S D + + TG++ + E H+ ++ P G + G D
Sbjct: 194 DDGHFISCSND---GLIKLVDXHTGDV----LRTYEGHESFVYCIKLLPNGDIVSCG-ED 245
Query: 174 KTVKIWAVENKSSVKQILALPPFN 197
+TV+IW+ EN S+KQ++ LP +
Sbjct: 246 RTVRIWSKEN-GSLKQVITLPAIS 268
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLL 118
L S+C D + +L+ K T + L+ + L H V + F D ++
Sbjct: 62 LNSVCYDSEKELLLFGGK--DTXINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ--DGVV 117
Query: 119 LSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG-HEFATGSRDKTVK 177
+S S D+ V+ G + Y L +AH +W F ++F T S DKT+K
Sbjct: 118 ISGSWDKTAKVWK-----EGSLVYNL----QAHNASVWDAKVVSFSENKFLTASADKTIK 168
Query: 178 IW 179
+W
Sbjct: 169 LW 170
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 99 LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC 158
+ HS V + D LS S D+ ++ + TGE YQ R HK + S
Sbjct: 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV---ATGET-YQ---RFVGHKSDVMSV 113
Query: 159 SWNPFGHEFATGSRDKTVKIWAVENK 184
+ +GSRDKT+K+W ++ +
Sbjct: 114 DIDKKASMIISGSRDKTIKVWTIKGQ 139
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 8/127 (6%)
Query: 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH 113
GH + + +L G L+AS+ K EI LW + + KAM L + V + FS
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKD-----GEIMLWNLAAKKAMYTLSAQD-EVFSLAFSP 247
Query: 114 DDNLLLSVSRDRQFSVFAIQ-RTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR 172
+ L+ + VF++ + ++ + +A + S +W+ G G
Sbjct: 248 N-RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 306
Query: 173 DKTVKIW 179
D +++W
Sbjct: 307 DNVIRVW 313
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 29/151 (19%), Positives = 61/151 (40%), Gaps = 14/151 (9%)
Query: 87 LWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIA 146
LW+V + + R H V + ++++S SRD+ V+ I+ G+ L+
Sbjct: 91 LWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK----GQCLATLLG 146
Query: 147 RQE--AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALS 204
+ + R++ + + + DK VK W N + + NS++ L+
Sbjct: 147 HNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAW---NLNQFQIEADFIGHNSNINTLT 203
Query: 205 WVGLDRQKNHGFLAVGMESGVIELWSISVNR 235
+ +A + G I LW+++ +
Sbjct: 204 -----ASPDGTLIASAGKDGEIMLWNLAAKK 229
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 35.0 bits (79), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 17/103 (16%)
Query: 92 SWKAMG----------RLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEID 141
SWK G + HS V + D LS S D+ ++ + TGE
Sbjct: 44 SWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV---ATGET- 99
Query: 142 YQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENK 184
YQ R HK + S + +GSRDKT+K+W ++ +
Sbjct: 100 YQ---RFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQ 139
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
Query: 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH 113
GH + + +L G L+AS+ K EI LW + + KA L + V + FS
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKD-----GEIXLWNLAAKKAXYTLSAQD-EVFSLAFSP 247
Query: 114 DDNLLLSVSRDRQFSVFAIQ-RTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR 172
+ L+ + VF++ + ++ + +A + S +W+ G G
Sbjct: 248 N-RYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYT 306
Query: 173 DKTVKIWAV 181
D +++W V
Sbjct: 307 DNVIRVWQV 315
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 111/269 (41%), Gaps = 59/269 (21%)
Query: 51 KLYGHGNELFSLC--CDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRL-------QS 101
+L GH E + L + G L+++S + LW++ + G++
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHT------VCLWDINAGPKEGKIVDAKAIFTG 227
Query: 102 HSLTVTQI--RFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS 159
HS V + H+ +L SV+ D++ ++ + T + + + +AH + S
Sbjct: 228 HSAVVEDVAWHLLHE-SLFGSVADDQKLMIWDTRSNTTSKPSHLV----DAHTAEVNCLS 282
Query: 160 WNPFGHEF--ATGSRDKTVKIWAVEN--------KSSVKQILAL--PPFNSSVTALSWVG 207
+NP+ EF ATGS DKTV +W + N +S +I + P N ++ A S G
Sbjct: 283 FNPYS-EFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASS--G 339
Query: 208 LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMA 267
DR+ N V +L I ++ + + P I H A ++ +
Sbjct: 340 TDRRLN-----------VWDLSKIGEEQSAEDAEDGPPELLFI-----HGGHTAKISDFS 383
Query: 268 WKTHEKPKNSRTMQLASCGADNTVRVFQV 296
W +E + S DN ++++Q+
Sbjct: 384 WNPNEP------WVICSVSEDNIMQIWQM 406
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 46/221 (20%), Positives = 84/221 (38%), Gaps = 31/221 (14%)
Query: 50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQI 109
H L GH + C + G+ V S + +W+ + + LQ H+ V +
Sbjct: 233 HVLMGHVAAV--RCVQYDGRRVVSG-----AYDFMVKVWDPETETCLHTLQGHTNRVYSL 285
Query: 110 RFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFAT 169
+F D ++S S D V+ ++ TG + L Q + + +
Sbjct: 286 QF--DGIHVVSGSLDTSIRVWDVE---TGNCIHTLTGHQSL------TSGMELKDNILVS 334
Query: 170 GSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELW 229
G+ D TVKIW ++ ++ + S+VT L Q N F+ + G ++LW
Sbjct: 335 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL-------QFNKNFVITSSDDGTVKLW 387
Query: 230 SISVNR--TNDVSTPAPSTANIIIRF----DPFACHVAAVN 264
+ N V+ + + ++ R C V + N
Sbjct: 388 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 428
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 21/143 (14%)
Query: 52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTV--TQI 109
L GH + + + C G + S + + +W + K + L H+ V +Q+
Sbjct: 114 LKGHDDHVIT-CLQFCGNRIVSGSDDNT-----LKVWSAVTGKCLRTLVGHTGGVWSSQM 167
Query: 110 RFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFAT 169
R DN+++S S DR V+ + TGE + L + + + +
Sbjct: 168 R----DNIIISGSTDRTLKVWNAE---TGECIHTLYGHTSTVRCM------HLHEKRVVS 214
Query: 170 GSRDKTVKIWAVENKSSVKQILA 192
GSRD T+++W +E + ++
Sbjct: 215 GSRDATLRVWDIETGQCLHVLMG 237
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 48/123 (39%), Gaps = 18/123 (14%)
Query: 150 AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLD 209
AH +I + +G AT S DKT+KI+ VE ++ K I L V + W
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWA--- 62
Query: 210 RQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWK 269
K LA G + +W R + ++ A H A+VN + W
Sbjct: 63 HPKFGTILASCSYDGKVLIWKEENGRWSQIAV--------------HAVHSASVNSVQWA 108
Query: 270 THE 272
HE
Sbjct: 109 PHE 111
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 51/131 (38%), Gaps = 33/131 (25%)
Query: 64 CDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDN--LLLSV 121
C + GK++ IW E G W + HS +V ++++ + LLL
Sbjct: 73 CSYDGKVL-------------IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVA 119
Query: 122 SRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHE-------------FA 168
S D + SV + GT +I +AH + S SW P E F
Sbjct: 120 SSDGKVSVVEFKENGTTS---PIII--DAHAIGVNSASWAPATIEEDGEHNGTKESRKFV 174
Query: 169 TGSRDKTVKIW 179
TG D VKIW
Sbjct: 175 TGGADNLVKIW 185
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 18/129 (13%)
Query: 144 LIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTAL 203
++ AH +I + +G AT S DKT+KI+ VE ++ K I L V +
Sbjct: 3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRV 61
Query: 204 SWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAV 263
W K LA G + +W R + ++ A H A+V
Sbjct: 62 DWA---HPKFGTILASCSYDGKVLIWKEENGRWSQIAV--------------HAVHSASV 104
Query: 264 NRMAWKTHE 272
N + W HE
Sbjct: 105 NSVQWAPHE 113
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 61/152 (40%), Gaps = 27/152 (17%)
Query: 48 ESHKLY----GHGNELFSLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSH 102
E+HKL GH ++ + H + + +SC IW E G W + H
Sbjct: 43 ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL--IWKEENGRWSQIAVHAVH 100
Query: 103 SLTVTQIRFSHDDN--LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW 160
S +V ++++ + LLL S D + SV + GT +I +AH + S SW
Sbjct: 101 SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS---PIII--DAHAIGVNSASW 155
Query: 161 NPFGHE-------------FATGSRDKTVKIW 179
P E F TG D VKIW
Sbjct: 156 APATIEEDGEHNGTKESRKFVTGGADNLVKIW 187
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 99 LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC 158
L+ HS V+ + S D LS S D ++ + TGT R H + + S
Sbjct: 59 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT-TGT------TTRRFVGHTKDVLSV 111
Query: 159 SWNPFGHEFATGSRDKTVKIW 179
+++ + +GSRDKT+K+W
Sbjct: 112 AFSSDNRQIVSGSRDKTIKLW 132
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 20/105 (19%)
Query: 87 LWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSV--------FAIQRTGTG 138
LW++ + R H+ V + FS D+ ++S SRD+ + + +Q
Sbjct: 89 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHS 148
Query: 139 EIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVEN 183
E + + II SC W DK VK+W + N
Sbjct: 149 EWVSCVRFSPNSSNPIIVSCGW------------DKLVKVWNLAN 181
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 99 LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC 158
L+ HS V+ + S D LS S D ++ + TGT R H + + S
Sbjct: 82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT-TGT------TTRRFVGHTKDVLSV 134
Query: 159 SWNPFGHEFATGSRDKTVKIW 179
+++ + +GSRDKT+K+W
Sbjct: 135 AFSSDNRQIVSGSRDKTIKLW 155
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 20/105 (19%)
Query: 87 LWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSV--------FAIQRTGTG 138
LW++ + R H+ V + FS D+ ++S SRD+ + + +Q
Sbjct: 112 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHS 171
Query: 139 EIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVEN 183
E + + II SC W DK VK+W + N
Sbjct: 172 EWVSCVRFSPNSSNPIIVSCGW------------DKLVKVWNLAN 204
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 18/129 (13%)
Query: 144 LIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTAL 203
++ AH +I + +G AT S DKT+KI+ VE ++ K I L V +
Sbjct: 1 MVVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRV 59
Query: 204 SWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAV 263
W K LA G + +W R + ++ A H A+V
Sbjct: 60 DWA---HPKFGTILASCSYDGKVMIWKEENGRWSQIAV--------------HAVHSASV 102
Query: 264 NRMAWKTHE 272
N + W HE
Sbjct: 103 NSVQWAPHE 111
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 61/152 (40%), Gaps = 27/152 (17%)
Query: 48 ESHKLY----GHGNELFSLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSH 102
E+HKL GH ++ + H + + +SC IW E G W + H
Sbjct: 41 ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM--IWKEENGRWSQIAVHAVH 98
Query: 103 SLTVTQIRFSHDDN--LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW 160
S +V ++++ + +LL S D + SV + GT +I +AH + S SW
Sbjct: 99 SASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTS---PIII--DAHAIGVNSASW 153
Query: 161 NPFGHE-------------FATGSRDKTVKIW 179
P E F TG D VKIW
Sbjct: 154 APATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 18/129 (13%)
Query: 144 LIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTAL 203
++ AH +I + +G AT S DKT+KI+ VE ++ K I L V +
Sbjct: 1 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRV 59
Query: 204 SWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAV 263
W K LA G + +W R + ++ A H A+V
Sbjct: 60 DWA---HPKFGTILASCSYDGKVLIWKEENGRWSQIAV--------------HAVHSASV 102
Query: 264 NRMAWKTHE 272
N + W HE
Sbjct: 103 NSVQWAPHE 111
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 61/152 (40%), Gaps = 27/152 (17%)
Query: 48 ESHKLY----GHGNELFSLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSH 102
E+HKL GH ++ + H + + +SC IW E G W + H
Sbjct: 41 ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL--IWKEENGRWSQIAVHAVH 98
Query: 103 SLTVTQIRFSHDDN--LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW 160
S +V ++++ + LLL S D + SV + GT +I +AH + S SW
Sbjct: 99 SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS---PIII--DAHAIGVNSASW 153
Query: 161 NPFGHE-------------FATGSRDKTVKIW 179
P E F TG D VKIW
Sbjct: 154 APATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 99 LQSHSLTVTQIRFSHD---DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRII 155
L+ HS V + +S + L SVS+DR ++ Q G L+ ++E ++
Sbjct: 200 LEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT-QDNEQGPWKKTLL-KEEKFPDVL 257
Query: 156 WSCSWNPFGHEFATGSRDKTVKIW 179
W SW+ G+ A D V +W
Sbjct: 258 WRASWSLSGNVLALSGGDNKVTLW 281
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 35/191 (18%)
Query: 115 DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEF--ATGSR 172
++L SV+ D++ ++ + T + + + +AH + S+NP+ EF ATGS
Sbjct: 244 ESLFGSVADDQKLMIWDTRNNNTSKPSHTV----DAHTAEVNCLSFNPYS-EFILATGSA 298
Query: 173 DKTVKIWAVENKSSVKQILALPPFNS---SVTALSWVGLDRQKNHGFLAVGMESGVIELW 229
DKTV +W + N L L F S + + W N LA + +W
Sbjct: 299 DKTVALWDLRNLK-----LKLHSFESHKDEIFQVQW----SPHNETILASSGTDRRLHVW 349
Query: 230 SISV----NRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASC 285
+S T D P I H A ++ +W +E + S
Sbjct: 350 DLSKIGEEQSTEDAEDGPPELLFI------HGGHTAKISDFSWNPNEP------WIICSV 397
Query: 286 GADNTVRVFQV 296
DN ++V+Q+
Sbjct: 398 SEDNIMQVWQM 408
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 35/191 (18%)
Query: 115 DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEF--ATGSR 172
++L SV+ D++ ++ + T + + + +AH + S+NP+ EF ATGS
Sbjct: 246 ESLFGSVADDQKLMIWDTRNNNTSKPSHTV----DAHTAEVNCLSFNPYS-EFILATGSA 300
Query: 173 DKTVKIWAVENKSSVKQILALPPFNS---SVTALSWVGLDRQKNHGFLAVGMESGVIELW 229
DKTV +W + N L L F S + + W N LA + +W
Sbjct: 301 DKTVALWDLRNLK-----LKLHSFESHKDEIFQVQW----SPHNETILASSGTDRRLHVW 351
Query: 230 SISV----NRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASC 285
+S T D P I H A ++ +W +E + S
Sbjct: 352 DLSKIGEEQSTEDAEDGPPELLFI------HGGHTAKISDFSWNPNEP------WIICSV 399
Query: 286 GADNTVRVFQV 296
DN ++V+Q+
Sbjct: 400 SEDNIMQVWQM 410
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 35/191 (18%)
Query: 115 DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEF--ATGSR 172
++L SV+ D++ ++ + T + + + +AH + S+NP+ EF ATGS
Sbjct: 248 ESLFGSVADDQKLMIWDTRNNNTSKPSHTV----DAHTAEVNCLSFNPYS-EFILATGSA 302
Query: 173 DKTVKIWAVENKSSVKQILALPPFNS---SVTALSWVGLDRQKNHGFLAVGMESGVIELW 229
DKTV +W + N L L F S + + W N LA + +W
Sbjct: 303 DKTVALWDLRNLK-----LKLHSFESHKDEIFQVQW----SPHNETILASSGTDRRLHVW 353
Query: 230 SISV----NRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASC 285
+S T D P I H A ++ +W +E + S
Sbjct: 354 DLSKIGEEQSTEDAEDGPPELLFI------HGGHTAKISDFSWNPNEP------WIICSV 401
Query: 286 GADNTVRVFQV 296
DN ++V+Q+
Sbjct: 402 SEDNIMQVWQM 412
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 70/183 (38%), Gaps = 42/183 (22%)
Query: 42 WHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS 101
W W +H +YG N L S C + K++ IW E G+W+
Sbjct: 61 WQVAW--AHPMYG--NILAS--CSYDRKVI-------------IWREENGTWEKSHEHAG 101
Query: 102 HSLTVTQIRFS-HDDNLLLSV-SRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS 159
H +V + ++ HD L+L+ S D S+ T TGE +++ AH + S
Sbjct: 102 HDSSVNSVCWAPHDYGLILACGSSDGAISLL----TYTGEGQWEVKKINNAHTIGCNAVS 157
Query: 160 WNP-----------------FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTA 202
W P + FA+G D +K+W E K+ L + V
Sbjct: 158 WAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRD 217
Query: 203 LSW 205
++W
Sbjct: 218 VAW 220
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 93 WKAMGRLQSHSLTVTQI-----RFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR 147
W +++ S+ VT+ +F N ++ S D + VF TG +D+
Sbjct: 40 WNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN-TGEKVVDF----- 93
Query: 148 QEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQIL 191
EAH I S + +P +GS D TVK+W EN +++Q
Sbjct: 94 -EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 10/112 (8%)
Query: 82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFS-HDDNLLLSVSRDRQFSVFAIQRTGTGEI 140
++W WE +W + H V + F+ D + S DR V+++ G
Sbjct: 120 TVKLWNWE-NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL---GQSTP 175
Query: 141 DYQLIARQEAHKRIIWSCSWNPFGHE--FATGSRDKTVKIWAVENKSSVKQI 190
++ L QE R + + P + T S D T+KIW + KS V +
Sbjct: 176 NFTLTTGQE---RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 93 WKAMGRLQSHSLTVTQI-----RFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR 147
W +++ S+ VT+ +F N ++ S D + VF TG +D+
Sbjct: 40 WNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN-TGEKVVDF----- 93
Query: 148 QEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQIL 191
EAH I S + +P +GS D TVK+W EN +++Q
Sbjct: 94 -EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 10/112 (8%)
Query: 82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFS-HDDNLLLSVSRDRQFSVFAIQRTGTGEI 140
++W WE +W + H V + F+ D + S DR V+++ G
Sbjct: 120 TVKLWNWE-NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL---GQSTP 175
Query: 141 DYQLIARQEAHKRIIWSCSWNPFGHE--FATGSRDKTVKIWAVENKSSVKQI 190
++ L QE R + + P + T S D T+KIW + KS V +
Sbjct: 176 NFTLTTGQE---RGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL 224
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 93 WKAMGRLQSHSLTVTQI-----RFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR 147
W +++ S+ VT+ +F N ++ S D + VF TG +D+
Sbjct: 40 WNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN-TGEKVVDF----- 93
Query: 148 QEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQIL 191
EAH I S + +P +GS D TVK+W EN +++Q
Sbjct: 94 -EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 19/117 (16%)
Query: 80 TAAAEIWLWEVGSWKAMGRLQSHSLTVTQI-----RFSHDDNLLLSVSRDRQFSVFAIQR 134
+ EIW +E +++ S+ VT+ +F N ++ S D + VF
Sbjct: 34 SGRVEIWNYET-------QVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN- 85
Query: 135 TGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQIL 191
TG +D+ EAH I S + +P +GS D TVK+W EN +++Q
Sbjct: 86 TGEKVVDF------EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 87 LWEVGSWKAMGRLQSHSLTVTQIRF--SHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQL 144
LW+V S + + H V + S N +S D++ V+ + R+G Q
Sbjct: 180 LWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM-RSG------QC 232
Query: 145 IARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIW 179
+ E H+ + S + P G FA+GS D T +++
Sbjct: 233 VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLY 267
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 32.0 bits (71), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 61/140 (43%), Gaps = 12/140 (8%)
Query: 48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVT 107
+ + L G + S+ GK +AS I ++++ + K + L+ H++ +
Sbjct: 156 KEYSLDTRGKFILSIAYSPDGKYLASGA-----IDGIINIFDIATGKLLHTLEGHAMPIR 210
Query: 108 QIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEF 167
+ FS D LL++ S D ++ +Q L H + + ++ P F
Sbjct: 211 SLTFSPDSQLLVTASDDGYIKIYDVQHA-------NLAGTLSGHASWVLNVAFCPDDTHF 263
Query: 168 ATGSRDKTVKIWAVENKSSV 187
+ S DK+VK+W V ++ V
Sbjct: 264 VSSSSDKSVKVWDVGTRTCV 283
Score = 31.6 bits (70), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/152 (20%), Positives = 62/152 (40%), Gaps = 15/152 (9%)
Query: 84 EIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQ 143
++W W L+ H L V + SH + S S D ++ ++ +
Sbjct: 61 KVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENG-------K 113
Query: 144 LIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTAL 203
I +A W+ +++P ATG+ V I+ VE S K+ +L + ++
Sbjct: 114 QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVE---SGKKEYSLDTRGKFILSI 170
Query: 204 SWVGLDRQKNHGFLAVGMESGVIELWSISVNR 235
++ + +LA G G+I ++ I+ +
Sbjct: 171 AY-----SPDGKYLASGAIDGIINIFDIATGK 197
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 138 GEIDYQLIARQE-AHKRIIWSCSWNPFGHE----FATGSRDKTVKIW 179
G Y ++ +QE AH IWS +W E TGS D VK+W
Sbjct: 17 GTNQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVW 63
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 19/109 (17%)
Query: 128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSV 187
S F +QR EID +AH I + P G + S+D +KIW+V++ S+
Sbjct: 126 SNFNLQR----EID-------QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP 174
Query: 188 KQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRT 236
+ ++ ++VT ++ + DR +N L+ ++ G I LW T
Sbjct: 175 RTLIG---HRATVTDIAII--DRGRN--VLSASLD-GTIRLWECGTGTT 215
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 100 QSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS 159
Q+H +T+++F L+S S+D Q +++++ G LI H+ + +
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK---DGSNPRTLI----GHRATVTDIA 188
Query: 160 WNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALS-WVGLDRQ 211
G + S D T+++W +++ + V +++ +VG DRQ
Sbjct: 189 IIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ 241
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 19/109 (17%)
Query: 128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSV 187
S F +QR EID +AH I + P G + S+D +KIW+V++ S+
Sbjct: 123 SNFNLQR----EID-------QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP 171
Query: 188 KQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRT 236
+ ++ ++VT ++ + DR +N L+ ++ G I LW T
Sbjct: 172 RTLIG---HRATVTDIAII--DRGRN--VLSASLD-GTIRLWECGTGTT 212
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query: 100 QSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS 159
Q+H +T+++F L+S S+D Q +++++ G LI H+ + +
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK---DGSNPRTLI----GHRATVTDIA 185
Query: 160 WNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALS-WVGLDRQ 211
G + S D T+++W +++ + V +++ +VG DRQ
Sbjct: 186 IIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ 238
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 106 VTQIRFSHDDN-LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG 164
V + FS D +++V DR+ S F + +GE + QE + I++ SW
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRKISCFDGK---SGEFLKYIEDDQEPVQGGIFALSWLD-S 264
Query: 165 HEFATGSRDKTVKIWAVENKSSVKQ 189
+FAT D T+++W V V++
Sbjct: 265 QKFATVGADATIRVWDVTTSKCVQK 289
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 106 VTQIRFSHDDN-LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG 164
V + FS D +++V DR+ S F + +GE + QE + I++ SW
Sbjct: 209 VRDVEFSPDSGEFVITVGSDRKISCFDGK---SGEFLKYIEDDQEPVQGGIFALSWLD-S 264
Query: 165 HEFATGSRDKTVKIWAVENKSSVKQ 189
+FAT D T+++W V V++
Sbjct: 265 QKFATVGADATIRVWDVTTSKCVQK 289
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 47/123 (38%), Gaps = 18/123 (14%)
Query: 150 AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLD 209
AH I + +G AT S DKT+KI+ VE ++ K I L V + W
Sbjct: 7 AHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWA--- 62
Query: 210 RQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWK 269
K LA G + +W R + ++ A H A+VN + W
Sbjct: 63 HPKFGTILASCSYDGKVXIWKEENGRWSQIAV--------------HAVHSASVNSVQWA 108
Query: 270 THE 272
HE
Sbjct: 109 PHE 111
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 60/152 (39%), Gaps = 27/152 (17%)
Query: 48 ESHKLY----GHGNELFSLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSH 102
E+HKL GH ++ + H + + +SC IW E G W + H
Sbjct: 41 ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD--GKVXIWKEENGRWSQIAVHAVH 98
Query: 103 SLTVTQIRFSHDDN--LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW 160
S +V ++++ + LL S D + SV + GT +I +AH + S SW
Sbjct: 99 SASVNSVQWAPHEYGPXLLVASSDGKVSVVEFKENGTTS---PIII--DAHAIGVNSASW 153
Query: 161 NPFGHE-------------FATGSRDKTVKIW 179
P E F TG D VKIW
Sbjct: 154 APATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRF 111
L GH + ++S DH+ K S+ + I +W++ + + M LQ H+ V +R
Sbjct: 306 LSGHTDRIYSTIYDHERKRCISA-----SMDTTIRIWDLENGELMYTLQGHTALVGLLRL 360
Query: 112 SHDDNLLLSVSRD 124
S D L+S + D
Sbjct: 361 S--DKFLVSAAAD 371
Score = 27.7 bits (60), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 16/143 (11%)
Query: 47 PESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTV 106
P+ L GH + + C + V + + I +++ + K + +L H V
Sbjct: 112 PQRTTLRGHMTSVIT-CLQFEDNYVITGADDKM-----IRVYDSINKKFLLQLSGHDGGV 165
Query: 107 TQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGH- 165
++++H +L+S S DR V+ I++ + E H + + +
Sbjct: 166 WALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHV-------FEGHNSTVRCLDIVEYKNI 217
Query: 166 -EFATGSRDKTVKIWAVENKSSV 187
TGSRD T+ +W + +SSV
Sbjct: 218 KYIVTGSRDNTLHVWKLPKESSV 240
>pdb|1FSL|A Chain A, Ferric Soybean Leghemoglobin Complexed With Nicotinate
pdb|1FSL|B Chain B, Ferric Soybean Leghemoglobin Complexed With Nicotinate
pdb|1BIN|A Chain A, Leghemoglobin A (Acetomet)
pdb|1BIN|B Chain B, Leghemoglobin A (Acetomet)
Length = 143
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 47 PESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAM 96
P + KL GH +LF+L D G+L KA T A+ L V + KA+
Sbjct: 53 PTNPKLTGHAEKLFALVRDSAGQL-----KASGTVVADAALGSVHAQKAV 97
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 30.8 bits (68), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 34/171 (19%), Positives = 69/171 (40%), Gaps = 43/171 (25%)
Query: 52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRF 111
L GH + L D + + SS + + +W+V + + + L H V +RF
Sbjct: 169 LTGHTGSVLCLQYDERVIITGSS-------DSTVRVWDVNTGEMLNTLIHHCEAVLHLRF 221
Query: 112 SHDDNLLLSVSRDRQFSV--------FAIQRTGTG--------EIDYQLIARQEAHKRI- 154
++ ++++ S+DR +V ++R G + D + I + I
Sbjct: 222 --NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIK 279
Query: 155 IWSCSWNPF-----GHE------------FATGSRDKTVKIWAVENKSSVK 188
+W+ S F GH+ +GS D T+++W +E + ++
Sbjct: 280 VWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLR 330
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 143 QLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIW 179
+L++ + H +WS SWN G ++ D V++W
Sbjct: 295 ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 331
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 120 SVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN--PFGHEFATGSRDKTVK 177
+ S D+ VF + + + +++L AH I + W +G A+ S DKTVK
Sbjct: 26 TCSSDQHIKVFKLDKDTS---NWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 82
Query: 178 IW 179
+W
Sbjct: 83 LW 84
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 119 LSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP----FGHEFATGSRDK 174
L+VS Q ++ QR G++ + A+ HK +I S SW P + ATG +D
Sbjct: 183 LAVSALEQAIIY--QRGKDGKL--HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG 238
Query: 175 TVKIWAVENKSS 186
++I+ + K S
Sbjct: 239 RIRIFKITEKLS 250
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 143 QLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIW 179
+L++ + H +WS SWN G ++ D V++W
Sbjct: 297 ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 119 LSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP----FGHEFATGSRDK 174
L+VS Q ++ QR G++ + A+ HK +I S SW P + ATG +D
Sbjct: 185 LAVSALEQAIIY--QRGKDGKL--HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG 240
Query: 175 TVKIWAVENKSS 186
++I+ + K S
Sbjct: 241 RIRIFKITEKLS 252
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 120 SVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP--FGHEFATGSRDKTVK 177
+ S D+ VF + + + +++L AH I + W +G A+ S DKTVK
Sbjct: 28 TCSSDQHIKVFKLDKDTS---NWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84
Query: 178 IW 179
+W
Sbjct: 85 LW 86
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 143 QLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIW 179
+L++ + H +WS SWN G ++ D V++W
Sbjct: 297 ELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 120 SVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN--PFGHEFATGSRDKTVK 177
+ S D+ VF + + + +++L AH I + W +G A+ S DKTVK
Sbjct: 28 TCSSDQHIKVFKLDKDTS---NWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84
Query: 178 IW 179
+W
Sbjct: 85 LW 86
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 8/72 (11%)
Query: 119 LSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP----FGHEFATGSRDK 174
L+VS Q ++ QR G++ + A+ HK +I S SW P + ATG +D
Sbjct: 185 LAVSALEQAIIY--QRGKDGKL--HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG 240
Query: 175 TVKIWAVENKSS 186
++I+ + K S
Sbjct: 241 RIRIFKITEKLS 252
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 14/115 (12%)
Query: 116 NLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR-QEAHKRIIWSCSWNPFGHEFATGSRDK 174
N L++ S + +Q +G Q I + Q+ H + W+ G + T S DK
Sbjct: 55 NFLIAGSWANDVRCWEVQDSG------QTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDK 108
Query: 175 TVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELW 229
T K+W + S Q + + ++ V + W+ + N+ + G ++ W
Sbjct: 109 TAKMWDL----SSNQAIQIAQHDAPVKTIHWI---KAPNYSCVMTGSWDKTLKFW 156
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 102 HSLTVTQIRFS-HDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW 160
HS VT + FS H L S+S D +V + + R +AH+ + +W
Sbjct: 256 HSQCVTGLVFSPHSVPFLASLSEDCSLAVL--------DSSLSELFRSQAHRDFVRDATW 307
Query: 161 NPFGHEFAT 169
+P H T
Sbjct: 308 SPLNHSLLT 316
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 149 EAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKS 185
+ H++ I + SW+P + + AT S D VK+W V S
Sbjct: 183 QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRAS 220
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 102 HSLTVTQIRFS-HDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW 160
HS +T + +S H L S+S D +V + D+ + R +H+ + +W
Sbjct: 268 HSQNITGLAYSYHSSPFLASISEDCTVAVL--------DADFSEVFRDLSHRDFVTGVAW 319
Query: 161 NPFGH 165
+P H
Sbjct: 320 SPLDH 324
>pdb|1IJS|P Chain P, Cpv (Strain D) Mutant A300d, Complex (Viral CoatDNA), VP2,
PH7.5, T4 Degrees C
pdb|1C8D|A Chain A, Canine Panleukopenia Virus Empty Capsid Structure
Length = 584
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 9/105 (8%)
Query: 164 GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSV------TALSWVGLDRQKNHGFL 217
G EFATG+ K + + + L LPPF +S+ T +G+ + K G
Sbjct: 258 GDEFATGTFFFDCKPCRLTHTWQTNRALGLPPFLNSLPQSEGDTNFGDIGVQQDKRRGVT 317
Query: 218 AVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAA 262
+G + + E ++ R +V AP + PF +AA
Sbjct: 318 QMGNTNYITE---ATIMRPAEVGYSAPYYSFEASTQGPFKTPIAA 359
>pdb|1P5Y|A Chain A, The Structures Of Host Range Controlling Regions Of The
Capsids Of Canine And Feline Parvoviruses And Mutants
Length = 548
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 9/105 (8%)
Query: 164 GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSV------TALSWVGLDRQKNHGFL 217
G EFATG+ K + + + L LPPF +S+ T +G+ + K G
Sbjct: 222 GDEFATGTFFFDCKPCRLTHTWQTNRALGLPPFLNSLPQSEGATNFGDIGVQQDKRRGVT 281
Query: 218 AVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAA 262
+G + + E ++ R +V AP + PF +AA
Sbjct: 282 QMGNTNYITE---ATIMRPAEVGYSAPYYSFEASTQGPFKTPIAA 323
>pdb|1P5W|A Chain A, The Structures Of Host Range Controlling Regions Of The
Capsids Of Canine And Feline Parvoviruses And Mutants
Length = 548
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 9/105 (8%)
Query: 164 GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSV------TALSWVGLDRQKNHGFL 217
G EFATG+ K + + + L LPPF +S+ T +G+ + K G
Sbjct: 222 GDEFATGTFFFDCKPCRLTHTWQTNRALGLPPFLNSLPQSEGATNFGDIGVQQDKRRGVT 281
Query: 218 AVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAA 262
+G + + E ++ R +V AP + PF +AA
Sbjct: 282 QMGNTNYITE---ATIMRPAEVGYSAPYYSFEASTQGPFKTPIAA 323
>pdb|4DPV|Z Chain Z, ParvovirusDNA COMPLEX
pdb|1C8H|A Chain A, Canine Parvovirus Strain D Empty Capsid Structure At Ph
5.5
Length = 584
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 9/105 (8%)
Query: 164 GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSV------TALSWVGLDRQKNHGFL 217
G EFATG+ K + + + L LPPF +S+ T +G+ + K G
Sbjct: 258 GDEFATGTFFFDCKPCRLTHTWQTNRALGLPPFLNSLPQSEGATNFGDIGVQQDKRRGVT 317
Query: 218 AVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAA 262
+G + + E ++ R +V AP + PF +AA
Sbjct: 318 QMGNTNYITE---ATIMRPAEVGYSAPYYSFEASTQGPFKTPIAA 359
>pdb|2CAS|A Chain A, The Canine Parvovirus Empty Capsid Structure
Length = 548
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 9/105 (8%)
Query: 164 GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSV------TALSWVGLDRQKNHGFL 217
G EFATG+ K + + + L LPPF +S+ T +G+ + K G
Sbjct: 222 GDEFATGTFFFDCKPCRLTHTWQTNRALGLPPFLNSLPQSEGATNFGDIGVQQDKRRGVT 281
Query: 218 AVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAA 262
+G + + E ++ R +V AP + PF +AA
Sbjct: 282 QMGNTNYITE---ATIMRPAEVGYSAPYYSFEASTQGPFKTPIAA 323
>pdb|1FPV|A Chain A, Structure Determination Of Feline Panleukopenia Virus
Empty Particles
Length = 584
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 9/105 (8%)
Query: 164 GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSV------TALSWVGLDRQKNHGFL 217
G EFATG+ K + + + L LPPF +S+ T +G+ + K G
Sbjct: 258 GDEFATGTFFFDCKPCRLTHTWQTNRALGLPPFLNSLPQSEGATNFGDIGVQQDKRRGVT 317
Query: 218 AVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAA 262
+G + E ++ R +V AP + PF +AA
Sbjct: 318 QMGNTDYITE---ATIMRPAEVGYSAPYYSFEASTQGPFKTPIAA 359
>pdb|1C8E|A Chain A, Feline Panleukopenia Virus Empty Capsid Structure
pdb|1C8F|A Chain A, Feline Panleukopenia Virus Empty Capsid Structure
pdb|1C8G|A Chain A, Feline Panleukopenia Virus Empty Capsid Structure
Length = 548
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 9/105 (8%)
Query: 164 GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSV------TALSWVGLDRQKNHGFL 217
G EFATG+ K + + + L LPPF +S+ T +G+ + K G
Sbjct: 222 GDEFATGTFFFDCKPCRLTHTWQTNRALGLPPFLNSLPQSEGATNFGDIGVQQDKRRGVT 281
Query: 218 AVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAA 262
+G + E ++ R +V AP + PF +AA
Sbjct: 282 QMGNTDYITE---ATIMRPAEVGYSAPYYSFEASTQGPFKTPIAA 323
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 16/143 (11%)
Query: 47 PESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTV 106
P+ L GH + + C + V + + I +++ + K + +L H V
Sbjct: 112 PQRTTLRGHXTSVIT-CLQFEDNYVITGADDKX-----IRVYDSINKKFLLQLSGHDGGV 165
Query: 107 TQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGH- 165
++++H +L+S S DR V+ I++ + E H + + +
Sbjct: 166 WALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHV-------FEGHNSTVRCLDIVEYKNI 217
Query: 166 -EFATGSRDKTVKIWAVENKSSV 187
TGSRD T+ +W + +SSV
Sbjct: 218 KYIVTGSRDNTLHVWKLPKESSV 240
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 145 IARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALS 204
I + H + +W G + A+G D V+IW + +SS+ + N++V A++
Sbjct: 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIW--DARSSIPKFTKT-NHNAAVKAVA 266
Query: 205 W 205
W
Sbjct: 267 W 267
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 116 NLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKT 175
N+LLS D +V + GTG L + H I+S W+ G T RDK
Sbjct: 145 NVLLSAGXD---NVILVWDVGTGAA--VLTLGPDVHPDTIYSVDWSRDGALICTSCRDKR 199
Query: 176 VKI 178
V++
Sbjct: 200 VRV 202
>pdb|2FUG|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|L Chain L, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|U Chain U, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|L Chain L, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|U Chain U, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|3 Chain 3, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|C Chain C, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|3 Chain 3, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|3 Chain 3, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|D Chain D, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 783
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 135 TGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKT 175
T +GE+ ++ AR+ IW C FGHE+A +R KT
Sbjct: 269 TRSGEL-LRIRAREVPEVNEIWICDAGRFGHEWADQNRLKT 308
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 30/147 (20%), Positives = 61/147 (41%), Gaps = 16/147 (10%)
Query: 85 IWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQL 144
I+++++ G+L H ++ + F+ + LLLS S D ++ + Y
Sbjct: 229 IFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY-- 286
Query: 145 IARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALS 204
H + I S SW + + S D +V++W+++ + +LAL +
Sbjct: 287 -----GHSQSIVSASW-VGDDKVISCSMDGSVRLWSLKQNT----LLALSIVDGVPIFAG 336
Query: 205 WVGLDRQKNHGFLAVGMESGVIELWSI 231
+ D QK AV G + ++ +
Sbjct: 337 RISQDGQK----YAVAFMDGQVNVYDL 359
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.130 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,068,965
Number of Sequences: 62578
Number of extensions: 355636
Number of successful extensions: 1380
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 966
Number of HSP's gapped (non-prelim): 295
length of query: 298
length of database: 14,973,337
effective HSP length: 98
effective length of query: 200
effective length of database: 8,840,693
effective search space: 1768138600
effective search space used: 1768138600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)