Query 037555
Match_columns 298
No_of_seqs 467 out of 1617
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 13:28:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037555.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037555hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0272 U4/U6 small nuclear ri 100.0 8.4E-46 1.8E-50 284.1 16.3 252 2-295 195-458 (459)
2 KOG0271 Notchless-like WD40 re 100.0 1.1E-42 2.5E-47 264.1 21.2 242 14-297 105-439 (480)
3 KOG0271 Notchless-like WD40 re 100.0 7.7E-41 1.7E-45 254.2 20.9 253 5-295 138-479 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-41 3.4E-46 260.7 16.1 233 21-296 172-417 (459)
5 KOG0279 G protein beta subunit 100.0 2.6E-39 5.5E-44 236.3 24.5 236 16-297 7-262 (315)
6 KOG0263 Transcription initiati 100.0 1E-39 2.2E-44 268.5 19.6 206 49-297 444-649 (707)
7 KOG0315 G-protein beta subunit 100.0 2.6E-37 5.6E-42 222.6 23.3 255 2-297 18-288 (311)
8 KOG0295 WD40 repeat-containing 100.0 3.1E-37 6.7E-42 233.1 20.7 250 3-296 129-405 (406)
9 KOG0279 G protein beta subunit 100.0 2.3E-36 5E-41 220.9 23.7 250 10-297 49-313 (315)
10 KOG0645 WD40 repeat protein [G 100.0 7E-36 1.5E-40 217.6 25.0 260 16-297 6-311 (312)
11 KOG0286 G-protein beta subunit 100.0 3.8E-36 8.3E-41 221.2 23.6 249 4-295 77-343 (343)
12 KOG0284 Polyadenylation factor 100.0 5.8E-38 1.2E-42 240.3 13.2 237 17-295 131-378 (464)
13 KOG0273 Beta-transducin family 100.0 2.9E-36 6.4E-41 234.8 21.9 244 22-297 176-482 (524)
14 KOG0645 WD40 repeat protein [G 100.0 1.3E-34 2.7E-39 211.0 26.4 214 48-296 6-224 (312)
15 KOG0286 G-protein beta subunit 100.0 4.5E-35 9.7E-40 215.6 23.3 213 48-297 47-259 (343)
16 KOG0295 WD40 repeat-containing 100.0 2.3E-35 5.1E-40 222.9 18.9 244 15-297 99-364 (406)
17 KOG0284 Polyadenylation factor 100.0 2E-36 4.3E-41 231.8 12.7 230 24-297 96-337 (464)
18 KOG0292 Vesicle coat complex C 100.0 1E-34 2.2E-39 241.9 20.7 241 18-297 3-280 (1202)
19 KOG0263 Transcription initiati 100.0 2.6E-34 5.7E-39 236.8 22.3 241 8-272 435-697 (707)
20 KOG0318 WD40 repeat stress pro 100.0 1.7E-33 3.6E-38 222.4 25.8 258 8-297 131-560 (603)
21 KOG0285 Pleiotropic regulator 100.0 2.9E-34 6.3E-39 216.9 20.2 226 44-297 139-389 (460)
22 KOG0276 Vesicle coat complex C 100.0 2.4E-34 5.1E-39 231.6 20.0 237 19-296 8-256 (794)
23 KOG0266 WD40 repeat-containing 100.0 5.6E-33 1.2E-37 232.5 26.1 237 17-297 151-409 (456)
24 KOG0282 mRNA splicing factor [ 100.0 5.4E-35 1.2E-39 228.4 12.9 242 14-295 204-503 (503)
25 KOG0315 G-protein beta subunit 100.0 3.9E-33 8.4E-38 201.1 21.2 212 48-297 32-245 (311)
26 KOG0266 WD40 repeat-containing 100.0 5.3E-33 1.2E-37 232.7 25.3 216 44-297 146-364 (456)
27 KOG0281 Beta-TrCP (transducin 100.0 5.1E-35 1.1E-39 220.4 11.3 222 23-297 196-428 (499)
28 KOG0273 Beta-transducin family 100.0 4.7E-33 1E-37 217.0 22.3 228 25-297 236-523 (524)
29 KOG0291 WD40-repeat-containing 100.0 1.3E-32 2.8E-37 225.8 25.4 250 4-297 287-550 (893)
30 KOG0296 Angio-associated migra 100.0 1.7E-32 3.7E-37 207.6 23.5 242 14-297 54-398 (399)
31 KOG0265 U5 snRNP-specific prot 100.0 3.7E-33 8E-38 206.2 19.2 207 47-297 38-246 (338)
32 KOG0293 WD40 repeat-containing 100.0 2.3E-33 5E-38 215.6 18.8 243 15-297 215-513 (519)
33 KOG0278 Serine/threonine kinas 100.0 5.3E-34 1.1E-38 205.8 12.4 243 17-297 7-297 (334)
34 KOG0285 Pleiotropic regulator 100.0 2.1E-32 4.5E-37 206.9 21.3 250 15-296 142-438 (460)
35 KOG0319 WD40-repeat-containing 100.0 1.8E-32 3.8E-37 224.4 22.0 250 8-295 307-617 (775)
36 KOG0265 U5 snRNP-specific prot 100.0 5E-32 1.1E-36 200.2 21.6 252 16-296 39-337 (338)
37 KOG0316 Conserved WD40 repeat- 100.0 3.6E-32 7.9E-37 194.7 19.8 237 15-297 8-257 (307)
38 KOG0277 Peroxisomal targeting 100.0 5.8E-33 1.3E-37 200.7 15.7 249 8-295 42-307 (311)
39 KOG0643 Translation initiation 100.0 1.6E-31 3.5E-36 194.6 22.5 258 18-296 4-316 (327)
40 PTZ00421 coronin; Provisional 100.0 8.1E-31 1.8E-35 219.0 27.2 207 50-297 69-290 (493)
41 KOG0291 WD40-repeat-containing 100.0 8.7E-31 1.9E-35 215.2 26.4 207 48-296 299-507 (893)
42 KOG0277 Peroxisomal targeting 100.0 5.3E-32 1.2E-36 195.8 16.4 203 55-297 59-265 (311)
43 KOG0313 Microtubule binding pr 100.0 2.1E-31 4.6E-36 202.7 19.7 253 2-296 123-417 (423)
44 PTZ00420 coronin; Provisional 100.0 5.3E-30 1.2E-34 215.2 29.5 209 48-297 66-293 (568)
45 KOG0316 Conserved WD40 repeat- 100.0 7E-31 1.5E-35 188.1 20.3 204 48-296 9-212 (307)
46 cd00200 WD40 WD40 domain, foun 100.0 8.2E-30 1.8E-34 202.5 28.7 249 3-295 30-289 (289)
47 KOG1063 RNA polymerase II elon 100.0 4.5E-31 9.8E-36 214.8 19.9 270 21-298 490-764 (764)
48 KOG0276 Vesicle coat complex C 100.0 9E-31 1.9E-35 211.1 21.2 247 2-292 33-294 (794)
49 KOG0264 Nucleosome remodeling 100.0 5.3E-31 1.1E-35 204.7 18.7 253 21-297 121-404 (422)
50 cd00200 WD40 WD40 domain, foun 100.0 1.3E-29 2.8E-34 201.4 26.9 237 17-297 2-249 (289)
51 KOG0310 Conserved WD40 repeat- 100.0 1.5E-30 3.2E-35 203.9 20.3 233 20-296 22-267 (487)
52 KOG0282 mRNA splicing factor [ 100.0 2.8E-31 6.1E-36 207.7 15.8 222 48-297 206-462 (503)
53 KOG0319 WD40-repeat-containing 100.0 2.8E-30 6E-35 211.7 20.0 257 4-297 84-577 (775)
54 KOG0292 Vesicle coat complex C 100.0 6.8E-30 1.5E-34 213.5 22.6 259 3-297 30-321 (1202)
55 KOG0313 Microtubule binding pr 100.0 4.7E-30 1E-34 195.4 19.8 239 22-297 103-376 (423)
56 KOG0318 WD40 repeat stress pro 100.0 4.3E-29 9.4E-34 197.6 25.7 263 12-297 47-350 (603)
57 KOG0281 Beta-TrCP (transducin 100.0 4.1E-31 8.9E-36 199.5 13.2 247 4-297 217-477 (499)
58 PLN00181 protein SPA1-RELATED; 100.0 5.9E-29 1.3E-33 222.7 29.1 238 19-297 478-738 (793)
59 KOG0294 WD40 repeat-containing 100.0 3.3E-29 7.1E-34 186.6 22.3 232 26-297 12-281 (362)
60 KOG0640 mRNA cleavage stimulat 100.0 2.6E-30 5.6E-35 192.4 16.2 213 48-297 104-335 (430)
61 KOG0305 Anaphase promoting com 100.0 2.3E-29 4.9E-34 203.8 21.7 215 55-296 216-460 (484)
62 KOG0640 mRNA cleavage stimulat 100.0 8.3E-30 1.8E-34 189.7 17.5 255 15-296 103-425 (430)
63 KOG0283 WD40 repeat-containing 100.0 1.1E-29 2.4E-34 211.1 20.1 209 50-296 260-531 (712)
64 PLN00181 protein SPA1-RELATED; 100.0 1.7E-28 3.7E-33 219.8 28.8 245 24-296 532-792 (793)
65 KOG0296 Angio-associated migra 100.0 1.3E-28 2.8E-33 186.7 22.7 168 48-235 56-223 (399)
66 KOG0264 Nucleosome remodeling 100.0 2.2E-29 4.8E-34 195.8 17.9 215 51-297 119-347 (422)
67 KOG0283 WD40 repeat-containing 100.0 3.4E-29 7.3E-34 208.3 20.1 209 49-297 362-576 (712)
68 KOG0643 Translation initiation 100.0 1.8E-28 3.9E-33 178.8 21.0 207 51-297 5-220 (327)
69 KOG0306 WD40-repeat-containing 100.0 1.4E-28 3E-33 202.3 22.6 247 3-296 393-663 (888)
70 KOG0973 Histone transcription 100.0 2.7E-28 5.9E-33 208.0 23.0 216 48-297 61-355 (942)
71 KOG0289 mRNA splicing factor [ 100.0 5.9E-28 1.3E-32 187.0 21.9 250 6-296 243-505 (506)
72 KOG0275 Conserved WD40 repeat- 100.0 6.3E-29 1.4E-33 186.3 16.1 236 22-296 211-466 (508)
73 KOG0274 Cdc4 and related F-box 100.0 5.5E-28 1.2E-32 202.4 23.2 242 4-297 228-482 (537)
74 KOG0646 WD40 repeat protein [G 100.0 1.1E-27 2.4E-32 187.0 21.5 219 55-297 80-307 (476)
75 KOG0300 WD40 repeat-containing 100.0 7.9E-28 1.7E-32 179.9 19.4 257 4-298 170-477 (481)
76 KOG0300 WD40 repeat-containing 100.0 1.1E-28 2.4E-33 184.4 14.2 214 48-297 140-386 (481)
77 KOG1446 Histone H3 (Lys4) meth 100.0 2.3E-26 5E-31 171.6 26.1 255 3-295 35-301 (311)
78 PTZ00421 coronin; Provisional 100.0 4.2E-27 9.1E-32 196.8 24.8 205 57-297 21-245 (493)
79 KOG0289 mRNA splicing factor [ 100.0 1.3E-27 2.9E-32 185.1 19.7 200 57-297 220-419 (506)
80 KOG1407 WD40 repeat protein [F 100.0 5.2E-28 1.1E-32 175.8 15.7 210 50-296 14-310 (313)
81 KOG0302 Ribosome Assembly prot 100.0 5E-28 1.1E-32 184.3 15.9 214 53-298 148-379 (440)
82 KOG0299 U3 snoRNP-associated p 100.0 2.1E-27 4.6E-32 185.1 19.2 247 17-297 135-410 (479)
83 KOG0275 Conserved WD40 repeat- 100.0 1.3E-28 2.9E-33 184.6 11.9 204 54-297 211-423 (508)
84 PTZ00420 coronin; Provisional 100.0 2.9E-26 6.4E-31 192.8 26.1 232 7-272 57-318 (568)
85 KOG0310 Conserved WD40 repeat- 100.0 9.1E-27 2E-31 182.8 21.3 242 7-293 51-305 (487)
86 KOG0772 Uncharacterized conser 100.0 1E-27 2.3E-32 189.5 15.7 218 50-297 161-394 (641)
87 KOG0647 mRNA export protein (c 100.0 7.1E-27 1.5E-31 173.3 19.1 211 55-297 26-281 (347)
88 KOG0306 WD40-repeat-containing 100.0 1.1E-26 2.4E-31 191.2 21.2 239 18-296 367-621 (888)
89 KOG1332 Vesicle coat complex C 100.0 1E-26 2.2E-31 167.7 18.2 219 48-297 48-286 (299)
90 KOG0274 Cdc4 and related F-box 100.0 1.5E-26 3.3E-31 193.8 21.0 200 49-297 241-441 (537)
91 KOG0288 WD40 repeat protein Ti 100.0 3.4E-27 7.3E-32 181.7 15.3 249 5-295 198-459 (459)
92 KOG0302 Ribosome Assembly prot 100.0 1.8E-26 3.9E-31 175.9 18.9 227 44-291 199-433 (440)
93 KOG0268 Sof1-like rRNA process 100.0 9E-28 1.9E-32 182.1 11.4 213 47-297 57-302 (433)
94 KOG2445 Nuclear pore complex c 99.9 3.6E-25 7.8E-30 164.7 24.1 261 21-297 10-318 (361)
95 KOG0973 Histone transcription 99.9 3.5E-26 7.5E-31 195.3 21.0 231 55-296 12-311 (942)
96 KOG1446 Histone H3 (Lys4) meth 99.9 1.3E-24 2.8E-29 162.4 26.7 237 23-297 13-262 (311)
97 KOG0269 WD40 repeat-containing 99.9 3.2E-27 7E-32 194.8 14.0 200 58-297 89-296 (839)
98 KOG0641 WD40 repeat protein [G 99.9 1.1E-24 2.5E-29 155.8 24.3 206 50-297 83-303 (350)
99 KOG1332 Vesicle coat complex C 99.9 8.3E-27 1.8E-31 168.1 12.7 218 52-296 7-240 (299)
100 KOG0641 WD40 repeat protein [G 99.9 6.3E-25 1.4E-29 157.1 22.1 237 21-297 86-349 (350)
101 KOG0288 WD40 repeat protein Ti 99.9 9.9E-27 2.1E-31 179.2 13.9 237 15-297 166-417 (459)
102 KOG2096 WD40 repeat protein [G 99.9 1.5E-25 3.2E-30 167.6 19.6 221 49-298 79-309 (420)
103 KOG0269 WD40 repeat-containing 99.9 5.8E-27 1.3E-31 193.3 13.2 205 50-292 127-335 (839)
104 KOG0308 Conserved WD40 repeat- 99.9 1.4E-26 3E-31 187.8 14.9 213 49-297 66-285 (735)
105 KOG0267 Microtubule severing p 99.9 3.2E-27 7E-32 193.5 10.1 227 18-288 22-259 (825)
106 KOG4283 Transcription-coupled 99.9 3.5E-25 7.5E-30 164.1 18.5 221 49-297 36-276 (397)
107 KOG0308 Conserved WD40 repeat- 99.9 2.5E-26 5.3E-31 186.3 13.1 206 54-297 19-243 (735)
108 KOG1408 WD40 repeat protein [F 99.9 1.6E-25 3.4E-30 183.9 17.9 207 52-297 455-713 (1080)
109 KOG0772 Uncharacterized conser 99.9 1.2E-25 2.6E-30 178.0 15.5 208 50-294 262-484 (641)
110 KOG0301 Phospholipase A2-activ 99.9 6.4E-25 1.4E-29 179.3 19.9 238 6-297 37-288 (745)
111 KOG0267 Microtubule severing p 99.9 5.1E-27 1.1E-31 192.4 7.4 205 50-297 22-226 (825)
112 KOG1036 Mitotic spindle checkp 99.9 2E-24 4.4E-29 160.7 20.2 209 56-297 13-262 (323)
113 KOG0278 Serine/threonine kinas 99.9 4.3E-25 9.4E-30 159.9 15.7 206 6-235 83-300 (334)
114 KOG0268 Sof1-like rRNA process 99.9 1.7E-25 3.7E-30 169.9 14.0 248 2-296 87-344 (433)
115 KOG1539 WD repeat protein [Gen 99.9 7.5E-24 1.6E-28 176.5 24.5 278 3-297 181-606 (910)
116 KOG0301 Phospholipase A2-activ 99.9 1E-24 2.2E-29 178.2 19.0 229 16-296 6-248 (745)
117 KOG0299 U3 snoRNP-associated p 99.9 6.7E-25 1.5E-29 171.3 17.1 204 49-297 135-356 (479)
118 KOG0293 WD40 repeat-containing 99.9 9.1E-25 2E-29 168.6 17.0 205 48-297 216-425 (519)
119 KOG2445 Nuclear pore complex c 99.9 4.1E-23 8.9E-28 153.8 23.6 222 53-297 10-256 (361)
120 KOG0270 WD40 repeat-containing 99.9 4.8E-24 1E-28 165.9 16.0 206 53-297 240-449 (463)
121 KOG2096 WD40 repeat protein [G 99.9 3.1E-23 6.8E-28 155.3 19.0 202 59-295 190-400 (420)
122 KOG0647 mRNA export protein (c 99.9 2.2E-23 4.9E-28 154.8 17.4 225 19-272 22-305 (347)
123 KOG4328 WD40 protein [Function 99.9 1.2E-23 2.6E-28 164.3 16.4 212 50-296 180-398 (498)
124 KOG0305 Anaphase promoting com 99.9 1.6E-23 3.4E-28 170.1 17.7 193 60-297 181-376 (484)
125 KOG1274 WD40 repeat protein [G 99.9 7.9E-23 1.7E-27 172.1 22.2 236 21-297 10-262 (933)
126 KOG1007 WD repeat protein TSSC 99.9 6.4E-23 1.4E-27 151.7 18.0 253 18-295 57-359 (370)
127 KOG0290 Conserved WD40 repeat- 99.9 7.6E-23 1.6E-27 151.4 18.2 209 53-297 93-318 (364)
128 KOG0270 WD40 repeat-containing 99.9 1.3E-23 2.9E-28 163.4 14.7 199 59-297 176-404 (463)
129 KOG0639 Transducin-like enhanc 99.9 1.7E-23 3.7E-28 165.5 13.7 230 22-297 417-663 (705)
130 KOG4283 Transcription-coupled 99.9 1.4E-22 3E-27 150.4 17.2 255 17-296 36-364 (397)
131 KOG0642 Cell-cycle nuclear pro 99.9 1.1E-22 2.3E-27 162.9 15.5 220 45-297 283-561 (577)
132 KOG1273 WD40 repeat protein [G 99.9 1.3E-21 2.7E-26 146.6 19.7 197 59-297 26-226 (405)
133 KOG0321 WD40 repeat-containing 99.9 6.7E-22 1.5E-26 160.5 19.7 232 50-297 94-391 (720)
134 KOG1036 Mitotic spindle checkp 99.9 1.9E-21 4.2E-26 145.0 20.5 242 2-287 33-294 (323)
135 KOG0646 WD40 repeat protein [G 99.9 4.3E-22 9.4E-27 156.0 17.4 214 23-271 80-330 (476)
136 KOG1007 WD repeat protein TSSC 99.9 6.9E-22 1.5E-26 146.2 17.2 217 49-296 56-288 (370)
137 KOG0294 WD40 repeat-containing 99.9 1.4E-21 3E-26 146.2 18.6 204 17-235 36-284 (362)
138 KOG2048 WD40 repeat protein [G 99.9 7.6E-21 1.6E-25 155.4 24.5 236 20-296 21-274 (691)
139 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 7.4E-20 1.6E-24 146.9 28.4 249 3-297 10-279 (300)
140 KOG1274 WD40 repeat protein [G 99.9 8.3E-21 1.8E-25 160.1 23.3 188 54-272 94-282 (933)
141 KOG0303 Actin-binding protein 99.9 3.1E-21 6.7E-26 148.4 18.7 207 49-297 74-294 (472)
142 KOG0650 WD40 repeat nucleolar 99.9 2.1E-21 4.6E-26 156.7 18.0 260 3-294 421-732 (733)
143 KOG1539 WD repeat protein [Gen 99.9 2.7E-21 5.9E-26 161.4 19.1 194 57-295 449-646 (910)
144 KOG2048 WD40 repeat protein [G 99.9 3E-20 6.6E-25 151.9 24.4 210 52-297 21-233 (691)
145 KOG2055 WD40 repeat protein [G 99.9 4.8E-21 1E-25 150.1 18.7 248 11-297 244-512 (514)
146 KOG0307 Vesicle coat complex C 99.9 2.1E-22 4.6E-27 173.3 11.4 207 56-297 64-284 (1049)
147 KOG1063 RNA polymerase II elon 99.9 2.6E-21 5.7E-26 158.4 16.3 244 22-297 314-648 (764)
148 KOG1407 WD40 repeat protein [F 99.9 2.1E-20 4.6E-25 136.5 19.1 198 3-223 86-293 (313)
149 KOG2106 Uncharacterized conser 99.9 3.5E-20 7.6E-25 146.9 21.8 242 17-296 361-625 (626)
150 KOG2106 Uncharacterized conser 99.9 7.1E-20 1.5E-24 145.2 22.7 239 16-297 192-477 (626)
151 KOG1445 Tumor-specific antigen 99.9 3.2E-21 7E-26 157.0 14.6 118 153-297 628-750 (1012)
152 KOG1408 WD40 repeat protein [F 99.9 3.1E-20 6.6E-25 153.2 19.9 214 50-297 363-671 (1080)
153 KOG1034 Transcriptional repres 99.9 9.8E-21 2.1E-25 142.5 15.6 253 19-297 33-337 (385)
154 KOG4328 WD40 protein [Function 99.9 1.7E-20 3.6E-25 146.9 17.1 250 15-296 177-449 (498)
155 KOG1009 Chromatin assembly com 99.9 7.7E-20 1.7E-24 141.2 19.8 147 55-209 12-177 (434)
156 KOG1523 Actin-related protein 99.9 1.1E-19 2.4E-24 136.5 19.9 222 52-296 6-235 (361)
157 KOG0639 Transducin-like enhanc 99.9 4.7E-21 1E-25 151.9 13.0 195 57-297 510-704 (705)
158 KOG1034 Transcriptional repres 99.9 1.8E-20 4E-25 141.0 15.0 218 48-296 127-382 (385)
159 KOG4378 Nuclear protein COP1 [ 99.9 2.6E-20 5.7E-25 147.5 16.5 197 59-297 82-280 (673)
160 KOG0307 Vesicle coat complex C 99.9 2.5E-21 5.4E-26 166.8 11.0 209 49-297 109-327 (1049)
161 KOG1310 WD40 repeat protein [G 99.9 2.7E-20 5.8E-25 149.2 14.8 234 48-297 42-303 (758)
162 KOG2055 WD40 repeat protein [G 99.9 1.5E-19 3.3E-24 141.8 18.6 201 56-297 213-417 (514)
163 KOG1538 Uncharacterized conser 99.8 4.6E-19 9.9E-24 145.4 21.2 209 58-297 14-293 (1081)
164 KOG1273 WD40 repeat protein [G 99.8 2E-19 4.3E-24 134.9 17.4 228 27-297 26-322 (405)
165 KOG1188 WD40 repeat protein [G 99.8 1.1E-19 2.5E-24 137.4 16.2 194 69-297 41-242 (376)
166 KOG0321 WD40 repeat-containing 99.8 1.1E-19 2.4E-24 147.9 17.1 205 61-297 54-301 (720)
167 KOG2919 Guanine nucleotide-bin 99.8 1.1E-19 2.4E-24 136.7 15.8 206 56-297 104-327 (406)
168 KOG0290 Conserved WD40 repeat- 99.8 2.8E-19 6.1E-24 132.7 17.3 240 21-293 93-361 (364)
169 KOG0771 Prolactin regulatory e 99.8 1.8E-19 4E-24 139.9 16.6 198 60-297 148-354 (398)
170 KOG0650 WD40 repeat nucleolar 99.8 6.2E-19 1.3E-23 142.6 19.4 224 49-295 393-678 (733)
171 KOG4227 WD40 repeat protein [G 99.8 7.5E-19 1.6E-23 135.7 18.0 230 49-295 49-385 (609)
172 KOG4378 Nuclear protein COP1 [ 99.8 4.5E-19 9.7E-24 140.6 16.8 194 44-272 104-305 (673)
173 KOG0322 G-protein beta subunit 99.8 3.7E-19 7.9E-24 130.3 11.0 214 48-296 6-322 (323)
174 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 2.1E-17 4.5E-22 132.7 22.4 182 69-297 2-187 (300)
175 KOG1445 Tumor-specific antigen 99.8 1.3E-18 2.8E-23 142.0 14.6 199 65-295 588-796 (1012)
176 KOG2919 Guanine nucleotide-bin 99.8 3.2E-18 6.8E-23 128.9 15.5 193 54-288 153-361 (406)
177 KOG1188 WD40 repeat protein [G 99.8 2.2E-18 4.8E-23 130.5 14.4 228 48-296 62-345 (376)
178 KOG0644 Uncharacterized conser 99.8 7.4E-20 1.6E-24 153.2 6.8 206 48-296 182-425 (1113)
179 KOG1587 Cytoplasmic dynein int 99.8 9.2E-18 2E-22 140.4 18.4 212 54-297 240-516 (555)
180 KOG0649 WD40 repeat protein [G 99.8 1.9E-16 4.2E-21 115.0 22.4 200 48-296 54-273 (325)
181 KOG2110 Uncharacterized conser 99.8 3.4E-16 7.4E-21 120.0 24.9 159 56-235 87-251 (391)
182 KOG1524 WD40 repeat-containing 99.8 1.3E-17 2.7E-22 133.7 16.5 186 49-293 97-282 (737)
183 KOG0649 WD40 repeat protein [G 99.8 1.8E-17 4E-22 120.2 15.1 202 57-297 11-235 (325)
184 KOG0303 Actin-binding protein 99.8 6.3E-17 1.4E-21 125.0 18.5 200 17-234 74-296 (472)
185 KOG2110 Uncharacterized conser 99.8 1E-15 2.2E-20 117.4 22.7 195 58-297 48-248 (391)
186 KOG2394 WD40 protein DMR-N9 [G 99.8 5E-17 1.1E-21 130.2 16.2 202 67-297 184-452 (636)
187 COG2319 FOG: WD40 repeat [Gene 99.8 1.5E-15 3.3E-20 127.4 25.9 209 48-297 147-359 (466)
188 PRK01742 tolB translocation pr 99.8 2.3E-16 5E-21 132.2 20.6 201 49-296 196-400 (429)
189 KOG1009 Chromatin assembly com 99.7 3.6E-17 7.9E-22 126.6 13.6 167 103-297 13-195 (434)
190 COG2319 FOG: WD40 repeat [Gene 99.7 2.6E-15 5.6E-20 126.0 26.1 239 19-297 60-314 (466)
191 KOG0642 Cell-cycle nuclear pro 99.7 5.6E-17 1.2E-21 130.5 14.6 202 19-234 289-563 (577)
192 KOG1523 Actin-related protein 99.7 1.3E-16 2.8E-21 120.1 15.4 170 99-296 6-175 (361)
193 KOG1587 Cytoplasmic dynein int 99.7 5.5E-16 1.2E-20 129.9 19.6 188 82-297 221-472 (555)
194 KOG2394 WD40 protein DMR-N9 [G 99.7 1.4E-16 3E-21 127.7 13.3 165 56-234 219-454 (636)
195 KOG0644 Uncharacterized conser 99.7 1E-17 2.3E-22 140.5 7.1 239 17-295 183-466 (1113)
196 KOG1310 WD40 repeat protein [G 99.7 4.3E-17 9.3E-22 131.1 10.3 178 96-296 43-230 (758)
197 KOG1963 WD40 repeat protein [G 99.7 2.9E-15 6.3E-20 126.6 20.7 117 54-183 203-323 (792)
198 KOG2139 WD40 repeat protein [G 99.7 9.5E-15 2.1E-19 112.0 21.5 213 3-234 119-385 (445)
199 KOG0322 G-protein beta subunit 99.7 2.4E-16 5.3E-21 115.7 12.2 163 54-231 148-322 (323)
200 KOG1272 WD40-repeat-containing 99.7 2.9E-17 6.2E-22 129.4 7.1 195 56-297 129-323 (545)
201 PRK11028 6-phosphogluconolacto 99.7 2.7E-14 5.8E-19 116.2 24.3 210 57-297 80-304 (330)
202 KOG1517 Guanine nucleotide bin 99.7 3E-15 6.6E-20 129.0 18.9 204 60-296 1169-1380(1387)
203 PRK11028 6-phosphogluconolacto 99.7 1.5E-13 3.3E-18 111.8 27.4 217 49-297 28-258 (330)
204 KOG1334 WD40 repeat protein [G 99.7 6E-16 1.3E-20 122.7 12.1 215 49-295 135-464 (559)
205 KOG1517 Guanine nucleotide bin 99.7 5.1E-15 1.1E-19 127.7 18.5 210 55-297 1063-1287(1387)
206 KOG1524 WD40 repeat-containing 99.7 8.4E-16 1.8E-20 123.4 12.7 157 81-272 83-239 (737)
207 KOG2111 Uncharacterized conser 99.7 2.3E-13 5.1E-18 102.7 23.8 162 55-235 93-259 (346)
208 PRK05137 tolB translocation pr 99.7 3.6E-14 7.8E-19 119.4 22.0 194 49-287 194-396 (435)
209 KOG4227 WD40 repeat protein [G 99.7 1.6E-15 3.5E-20 117.5 12.4 175 97-297 50-225 (609)
210 PF08662 eIF2A: Eukaryotic tra 99.7 3.2E-14 7E-19 105.6 19.0 154 60-233 9-180 (194)
211 PF08662 eIF2A: Eukaryotic tra 99.7 3E-14 6.4E-19 105.8 18.7 149 107-297 9-179 (194)
212 KOG1963 WD40 repeat protein [G 99.7 2.7E-14 5.8E-19 120.9 20.4 203 59-296 19-321 (792)
213 PRK03629 tolB translocation pr 99.7 6.3E-14 1.4E-18 117.4 22.6 203 49-296 191-405 (429)
214 KOG2321 WD40 repeat protein [G 99.7 1.2E-14 2.5E-19 117.8 16.8 176 88-294 160-340 (703)
215 KOG2139 WD40 repeat protein [G 99.6 3.7E-14 7.9E-19 108.9 17.6 201 57-297 99-309 (445)
216 PRK02889 tolB translocation pr 99.6 7.4E-14 1.6E-18 117.0 21.1 197 49-288 188-391 (427)
217 KOG1240 Protein kinase contain 99.6 1.9E-14 4.1E-19 125.9 17.6 186 88-298 1034-1226(1431)
218 KOG2111 Uncharacterized conser 99.6 1.9E-13 4.2E-18 103.2 20.4 180 81-297 73-256 (346)
219 PRK01742 tolB translocation pr 99.6 2.6E-14 5.6E-19 119.9 16.6 216 16-271 195-426 (429)
220 KOG3881 Uncharacterized conser 99.6 7.8E-14 1.7E-18 108.0 17.3 203 51-297 100-320 (412)
221 KOG1240 Protein kinase contain 99.6 1.4E-13 3E-18 120.6 20.6 220 48-297 1040-1273(1431)
222 PRK04922 tolB translocation pr 99.6 2.7E-13 5.9E-18 114.0 21.8 204 48-296 195-410 (433)
223 KOG1272 WD40-repeat-containing 99.6 9.1E-16 2E-20 121.0 6.0 191 56-295 170-360 (545)
224 KOG0771 Prolactin regulatory e 99.6 2.4E-14 5.2E-19 111.8 13.2 162 107-296 148-310 (398)
225 KOG0280 Uncharacterized conser 99.6 1.4E-13 3E-18 102.9 16.0 201 59-295 124-331 (339)
226 KOG1409 Uncharacterized conser 99.6 3E-13 6.6E-18 103.2 17.3 206 15-235 15-273 (404)
227 KOG1354 Serine/threonine prote 99.6 1.4E-13 3.1E-18 105.1 15.1 222 55-297 24-301 (433)
228 KOG1538 Uncharacterized conser 99.6 2.9E-14 6.3E-19 117.7 12.1 203 8-233 37-294 (1081)
229 KOG3881 Uncharacterized conser 99.5 4.8E-13 1E-17 103.7 15.1 158 59-234 151-322 (412)
230 TIGR02800 propeller_TolB tol-p 99.5 2.5E-12 5.4E-17 108.2 20.9 166 49-234 182-356 (417)
231 KOG0974 WD-repeat protein WDR6 99.5 6.3E-13 1.4E-17 114.7 17.1 195 58-297 89-288 (967)
232 KOG4497 Uncharacterized conser 99.5 1.4E-12 2.9E-17 99.3 15.8 203 61-295 13-238 (447)
233 PRK00178 tolB translocation pr 99.5 1.4E-11 3.1E-16 103.9 22.8 166 49-234 191-365 (430)
234 PRK03629 tolB translocation pr 99.5 1E-11 2.2E-16 104.2 21.0 217 17-270 191-427 (429)
235 KOG4497 Uncharacterized conser 99.5 8.8E-12 1.9E-16 95.0 17.9 202 52-296 87-390 (447)
236 PRK01029 tolB translocation pr 99.5 2.9E-11 6.2E-16 101.1 21.9 209 49-296 177-402 (428)
237 KOG4547 WD40 repeat-containing 99.5 2.1E-11 4.5E-16 99.5 20.0 193 66-297 3-220 (541)
238 KOG1064 RAVE (regulator of V-A 99.5 4.9E-13 1.1E-17 121.3 11.2 191 52-297 2204-2398(2439)
239 PRK02889 tolB translocation pr 99.4 3.9E-11 8.5E-16 100.7 19.8 176 82-297 175-360 (427)
240 KOG0280 Uncharacterized conser 99.4 3.5E-11 7.6E-16 90.3 16.8 186 56-272 69-265 (339)
241 PRK05137 tolB translocation pr 99.4 8.8E-11 1.9E-15 99.0 21.5 173 82-296 181-365 (435)
242 PRK04922 tolB translocation pr 99.4 5.3E-11 1.1E-15 100.3 19.8 174 82-297 183-368 (433)
243 COG5170 CDC55 Serine/threonine 99.4 8.9E-12 1.9E-16 94.3 13.4 223 55-297 25-309 (460)
244 PRK04792 tolB translocation pr 99.4 2.8E-10 6E-15 96.0 23.3 165 50-234 211-384 (448)
245 PF02239 Cytochrom_D1: Cytochr 99.4 3E-10 6.5E-15 92.8 22.6 182 81-296 14-201 (369)
246 KOG1409 Uncharacterized conser 99.4 1.8E-11 3.9E-16 93.7 14.3 214 48-297 16-270 (404)
247 PF10282 Lactonase: Lactonase, 99.4 3.6E-09 7.9E-14 86.4 28.9 212 55-297 85-322 (345)
248 KOG0974 WD-repeat protein WDR6 99.4 7.5E-12 1.6E-16 108.3 13.1 149 64-234 141-290 (967)
249 PF02239 Cytochrom_D1: Cytochr 99.4 2.3E-09 5.1E-14 87.6 25.4 147 48-209 28-183 (369)
250 PF10282 Lactonase: Lactonase, 99.3 1.9E-08 4.1E-13 82.2 29.6 218 55-296 35-274 (345)
251 KOG1064 RAVE (regulator of V-A 99.3 7E-12 1.5E-16 114.0 10.2 146 57-234 2252-2400(2439)
252 KOG1334 WD40 repeat protein [G 99.3 3.9E-12 8.5E-17 101.4 7.4 173 96-297 135-312 (559)
253 TIGR02800 propeller_TolB tol-p 99.3 6.6E-10 1.4E-14 93.6 21.2 173 82-296 169-353 (417)
254 PRK01029 tolB translocation pr 99.3 6.6E-10 1.4E-14 93.1 20.8 172 50-234 224-405 (428)
255 COG2706 3-carboxymuconate cycl 99.3 2E-08 4.3E-13 78.0 25.5 216 54-296 37-273 (346)
256 KOG2321 WD40 repeat protein [G 99.3 9.5E-11 2.1E-15 95.6 12.8 163 50-233 169-344 (703)
257 COG4946 Uncharacterized protei 99.3 2.2E-08 4.7E-13 80.6 24.6 129 45-186 348-481 (668)
258 PF15492 Nbas_N: Neuroblastoma 99.2 4.9E-08 1.1E-12 73.7 24.4 216 62-297 3-259 (282)
259 KOG0309 Conserved WD40 repeat- 99.2 1E-10 2.2E-15 98.3 9.9 225 50-297 108-339 (1081)
260 KOG3914 WD repeat protein WDR4 99.2 7.6E-10 1.6E-14 86.6 13.7 157 105-297 64-223 (390)
261 PRK04043 tolB translocation pr 99.2 2.9E-08 6.3E-13 82.8 24.1 155 58-234 189-359 (419)
262 KOG4547 WD40 repeat-containing 99.2 4E-09 8.7E-14 86.5 18.1 148 69-233 71-221 (541)
263 KOG2315 Predicted translation 99.2 4.2E-08 9.1E-13 80.3 23.0 199 55-297 164-390 (566)
264 KOG4714 Nucleoporin [Nuclear s 99.2 7.6E-10 1.6E-14 81.9 11.8 220 49-295 82-316 (319)
265 PRK00178 tolB translocation pr 99.2 1.4E-08 3.1E-13 85.8 21.2 172 83-296 179-362 (430)
266 PF04762 IKI3: IKI3 family; I 99.2 3E-08 6.5E-13 90.0 23.7 225 55-297 208-456 (928)
267 KOG4532 WD40-like repeat conta 99.1 2.2E-08 4.7E-13 74.8 18.4 201 61-297 72-282 (344)
268 KOG4190 Uncharacterized conser 99.1 1.1E-10 2.5E-15 95.1 7.1 169 49-236 728-910 (1034)
269 KOG1354 Serine/threonine prote 99.1 5.3E-10 1.2E-14 85.9 10.1 166 54-234 162-361 (433)
270 KOG2041 WD40 repeat protein [G 99.1 2.8E-09 6.1E-14 89.6 15.0 158 56-232 14-186 (1189)
271 PLN02919 haloacid dehalogenase 99.1 5E-08 1.1E-12 90.1 24.5 220 58-297 625-888 (1057)
272 PRK04792 tolB translocation pr 99.1 2.7E-08 5.9E-13 84.1 21.2 172 83-296 198-379 (448)
273 COG2706 3-carboxymuconate cycl 99.1 5E-07 1.1E-11 70.5 25.9 209 57-297 89-321 (346)
274 KOG2695 WD40 repeat protein [G 99.1 9.7E-10 2.1E-14 84.6 11.0 168 82-270 233-402 (425)
275 KOG4190 Uncharacterized conser 99.1 4.8E-10 1E-14 91.6 9.6 177 96-297 728-906 (1034)
276 KOG3914 WD repeat protein WDR4 99.1 1.9E-09 4.1E-14 84.5 12.5 162 58-238 64-229 (390)
277 KOG4714 Nucleoporin [Nuclear s 99.1 4.2E-10 9.2E-15 83.2 7.8 152 112-297 98-254 (319)
278 KOG1275 PAB-dependent poly(A) 99.1 3.3E-09 7.2E-14 91.3 14.1 176 82-295 156-340 (1118)
279 PF04762 IKI3: IKI3 family; I 99.1 8.8E-08 1.9E-12 87.0 23.9 203 54-296 118-378 (928)
280 KOG2315 Predicted translation 99.1 2E-08 4.3E-13 82.1 17.4 154 60-234 221-392 (566)
281 KOG1832 HIV-1 Vpr-binding prot 99.1 1.8E-10 4E-15 98.7 5.1 162 48-234 1093-1257(1516)
282 TIGR02658 TTQ_MADH_Hv methylam 99.1 1.1E-06 2.4E-11 70.7 26.2 217 48-297 39-330 (352)
283 KOG0309 Conserved WD40 repeat- 99.0 7.2E-10 1.6E-14 93.3 8.0 204 56-297 24-232 (1081)
284 KOG4532 WD40-like repeat conta 99.0 8.9E-08 1.9E-12 71.6 16.6 146 81-236 136-286 (344)
285 PF00400 WD40: WD domain, G-be 99.0 1.9E-09 4.1E-14 57.7 5.7 39 93-131 1-39 (39)
286 KOG2695 WD40 repeat protein [G 99.0 1.1E-09 2.4E-14 84.2 6.2 147 119-297 228-376 (425)
287 KOG1912 WD40 repeat protein [G 99.0 7.5E-08 1.6E-12 82.0 17.5 138 56-210 15-168 (1062)
288 PF00400 WD40: WD domain, G-be 98.9 8.3E-09 1.8E-13 55.2 6.7 38 143-180 2-39 (39)
289 PF07433 DUF1513: Protein of u 98.9 5.2E-06 1.1E-10 64.8 24.4 167 48-234 48-249 (305)
290 PF08450 SGL: SMP-30/Gluconola 98.9 1.1E-05 2.4E-10 62.8 26.9 184 59-286 42-245 (246)
291 PF15492 Nbas_N: Neuroblastoma 98.9 2.5E-06 5.4E-11 64.7 21.2 165 59-236 46-263 (282)
292 COG4946 Uncharacterized protei 98.9 1.3E-06 2.9E-11 70.6 20.1 144 67-234 331-479 (668)
293 KOG0882 Cyclophilin-related pe 98.8 7.6E-08 1.6E-12 76.9 12.3 215 54-297 7-231 (558)
294 KOG2314 Translation initiation 98.8 1.2E-06 2.5E-11 72.1 18.7 78 55-134 249-335 (698)
295 PF08450 SGL: SMP-30/Gluconola 98.8 2E-05 4.2E-10 61.5 25.3 196 61-296 4-212 (246)
296 KOG1645 RING-finger-containing 98.8 4.8E-07 1E-11 71.4 15.1 83 49-137 186-270 (463)
297 COG5354 Uncharacterized protei 98.8 3.7E-06 8E-11 68.5 19.7 198 57-297 174-395 (561)
298 KOG2066 Vacuolar assembly/sort 98.8 4.1E-07 9E-12 77.8 14.8 149 55-236 38-191 (846)
299 KOG1912 WD40 repeat protein [G 98.8 5.8E-07 1.2E-11 76.8 15.5 108 70-188 439-557 (1062)
300 PF07433 DUF1513: Protein of u 98.8 1.2E-05 2.7E-10 62.7 21.6 201 59-297 7-247 (305)
301 KOG1275 PAB-dependent poly(A) 98.7 3.2E-07 7E-12 79.5 13.8 152 58-231 179-341 (1118)
302 KOG2041 WD40 repeat protein [G 98.7 1.1E-07 2.4E-12 80.4 10.2 165 103-297 14-186 (1189)
303 KOG2066 Vacuolar assembly/sort 98.7 3.9E-06 8.4E-11 72.1 19.2 164 48-233 50-234 (846)
304 KOG2114 Vacuolar assembly/sort 98.7 3E-06 6.5E-11 73.3 18.5 198 63-296 30-242 (933)
305 KOG3617 WD40 and TPR repeat-co 98.7 7E-07 1.5E-11 77.1 14.7 115 59-183 18-132 (1416)
306 PLN02919 haloacid dehalogenase 98.7 3.6E-06 7.8E-11 78.2 20.2 166 59-235 685-891 (1057)
307 KOG2314 Translation initiation 98.7 1E-05 2.2E-10 66.8 19.9 255 5-297 283-573 (698)
308 KOG1920 IkappaB kinase complex 98.7 4E-06 8.6E-11 75.2 18.9 207 55-296 67-321 (1265)
309 PF11768 DUF3312: Protein of u 98.7 7.9E-07 1.7E-11 73.9 13.4 113 150-272 257-369 (545)
310 COG5354 Uncharacterized protei 98.7 1.4E-05 3E-10 65.4 19.9 230 26-297 34-306 (561)
311 PF11768 DUF3312: Protein of u 98.7 3.1E-06 6.8E-11 70.4 16.5 111 156-297 209-329 (545)
312 PRK04043 tolB translocation pr 98.6 1.4E-05 3E-10 66.9 20.2 160 50-232 226-400 (419)
313 KOG0882 Cyclophilin-related pe 98.6 5.2E-07 1.1E-11 72.3 11.0 176 49-239 46-238 (558)
314 KOG3621 WD40 repeat-containing 98.6 1.5E-06 3.2E-11 73.5 13.7 145 56-207 33-180 (726)
315 PF06977 SdiA-regulated: SdiA- 98.6 0.00011 2.4E-09 56.6 24.4 213 50-294 15-247 (248)
316 KOG1645 RING-finger-containing 98.6 1E-06 2.3E-11 69.6 11.0 139 85-233 175-316 (463)
317 KOG3617 WD40 and TPR repeat-co 98.5 8.5E-06 1.8E-10 70.8 16.2 71 59-134 62-132 (1416)
318 KOG1008 Uncharacterized conser 98.5 4.2E-08 9E-13 81.8 2.1 207 57-297 57-275 (783)
319 KOG1920 IkappaB kinase complex 98.5 6.4E-05 1.4E-09 67.8 21.2 162 55-234 108-324 (1265)
320 COG5170 CDC55 Serine/threonine 98.5 1.7E-06 3.7E-11 66.3 9.7 172 102-297 25-252 (460)
321 KOG1008 Uncharacterized conser 98.5 8E-08 1.7E-12 80.1 2.8 169 50-234 96-277 (783)
322 TIGR02658 TTQ_MADH_Hv methylam 98.5 0.00023 5E-09 57.6 21.8 99 83-190 27-144 (352)
323 TIGR03300 assembly_YfgL outer 98.3 0.00016 3.4E-09 60.3 18.8 170 81-294 198-376 (377)
324 PF08553 VID27: VID27 cytoplas 98.3 8.4E-05 1.8E-09 65.9 17.6 140 81-232 502-647 (794)
325 KOG1832 HIV-1 Vpr-binding prot 98.3 1.7E-06 3.7E-11 75.3 5.6 125 94-236 1092-1218(1516)
326 COG0823 TolB Periplasmic compo 98.3 6.8E-05 1.5E-09 62.6 14.9 167 50-234 186-360 (425)
327 PF13360 PQQ_2: PQQ-like domai 98.2 0.00032 6.9E-09 54.3 18.0 140 82-236 2-144 (238)
328 PF13360 PQQ_2: PQQ-like domai 98.2 0.00015 3.2E-09 56.2 16.0 183 67-297 35-230 (238)
329 PF03178 CPSF_A: CPSF A subuni 98.2 0.0017 3.6E-08 52.8 23.2 183 83-297 2-202 (321)
330 KOG4649 PQQ (pyrrolo-quinoline 98.2 0.00049 1.1E-08 52.0 16.7 63 67-134 62-124 (354)
331 TIGR03300 assembly_YfgL outer 98.2 0.00056 1.2E-08 57.0 19.0 142 68-235 65-211 (377)
332 KOG2114 Vacuolar assembly/sort 98.2 0.00088 1.9E-08 58.7 19.7 175 49-234 57-245 (933)
333 KOG3621 WD40 repeat-containing 98.1 3.7E-05 7.9E-10 65.5 10.8 121 153-297 34-154 (726)
334 PF08596 Lgl_C: Lethal giant l 98.1 0.0026 5.7E-08 52.8 20.9 177 49-234 79-292 (395)
335 KOG4640 Anaphase-promoting com 98.1 2.3E-05 5E-10 65.8 8.8 96 55-162 19-115 (665)
336 PF08596 Lgl_C: Lethal giant l 98.1 0.0043 9.3E-08 51.6 23.0 203 58-297 3-290 (395)
337 PRK02888 nitrous-oxide reducta 98.0 0.00054 1.2E-08 59.0 16.3 197 63-297 199-404 (635)
338 KOG4640 Anaphase-promoting com 98.0 5.2E-05 1.1E-09 63.8 9.5 96 102-207 19-115 (665)
339 PF04053 Coatomer_WDAD: Coatom 98.0 0.0021 4.6E-08 54.1 18.8 150 49-234 25-175 (443)
340 PF14783 BBS2_Mid: Ciliary BBS 98.0 0.0013 2.8E-08 43.2 13.3 104 106-227 2-109 (111)
341 smart00320 WD40 WD40 repeats. 97.9 3.1E-05 6.7E-10 40.3 4.8 38 94-131 3-40 (40)
342 PF04841 Vps16_N: Vps16, N-ter 97.9 0.0051 1.1E-07 51.7 18.8 48 84-133 62-109 (410)
343 PF08553 VID27: VID27 cytoplas 97.9 0.001 2.2E-08 59.3 15.1 137 122-296 501-646 (794)
344 PRK11138 outer membrane biogen 97.8 0.0046 1E-07 51.9 18.6 171 81-296 213-393 (394)
345 smart00320 WD40 WD40 repeats. 97.8 8E-05 1.7E-09 38.7 5.5 38 143-180 3-40 (40)
346 PF04053 Coatomer_WDAD: Coatom 97.8 0.0053 1.2E-07 51.8 17.8 140 103-296 32-172 (443)
347 COG3391 Uncharacterized conser 97.8 0.016 3.5E-07 48.3 22.3 158 59-234 76-241 (381)
348 PF03178 CPSF_A: CPSF A subuni 97.8 0.014 3E-07 47.5 25.0 202 68-293 42-261 (321)
349 PF00930 DPPIV_N: Dipeptidyl p 97.8 0.014 3.1E-07 48.1 20.1 100 65-172 1-120 (353)
350 PF06433 Me-amine-dh_H: Methyl 97.7 0.014 3.1E-07 46.6 22.3 201 60-297 98-320 (342)
351 PRK13616 lipoprotein LpqB; Pro 97.7 0.0072 1.6E-07 53.0 18.4 162 57-232 350-525 (591)
352 COG3204 Uncharacterized protei 97.7 0.012 2.7E-07 45.6 17.8 173 52-233 81-264 (316)
353 PF14783 BBS2_Mid: Ciliary BBS 97.7 0.0052 1.1E-07 40.4 13.4 105 155-293 2-110 (111)
354 KOG2395 Protein involved in va 97.6 0.0026 5.6E-08 53.1 13.3 137 81-233 354-501 (644)
355 KOG2444 WD40 repeat protein [G 97.6 9E-05 2E-09 54.7 3.9 143 117-297 32-177 (238)
356 PF00930 DPPIV_N: Dipeptidyl p 97.5 0.038 8.2E-07 45.7 20.6 175 49-233 35-267 (353)
357 COG3490 Uncharacterized protei 97.5 0.0047 1E-07 47.6 12.4 166 63-235 120-313 (366)
358 PF06977 SdiA-regulated: SdiA- 97.5 0.026 5.6E-07 43.7 17.4 171 99-296 17-200 (248)
359 COG0823 TolB Periplasmic compo 97.5 0.0038 8.2E-08 52.4 13.1 139 58-209 239-381 (425)
360 KOG2395 Protein involved in va 97.5 0.0047 1E-07 51.6 13.1 145 114-297 344-500 (644)
361 COG3391 Uncharacterized conser 97.5 0.044 9.6E-07 45.7 20.0 160 58-234 117-285 (381)
362 PRK02888 nitrous-oxide reducta 97.5 0.005 1.1E-07 53.3 13.4 109 66-183 286-405 (635)
363 KOG2079 Vacuolar assembly/sort 97.5 0.00095 2.1E-08 60.0 9.3 106 163-297 98-203 (1206)
364 PRK13616 lipoprotein LpqB; Pro 97.5 0.037 8E-07 48.7 19.0 177 82-297 328-525 (591)
365 PF14870 PSII_BNR: Photosynthe 97.4 0.043 9.4E-07 43.8 21.4 158 101-294 142-301 (302)
366 PF05694 SBP56: 56kDa selenium 97.4 0.064 1.4E-06 44.5 18.8 211 57-297 65-342 (461)
367 PF12234 Rav1p_C: RAVE protein 97.3 0.036 7.8E-07 48.6 17.0 124 153-295 30-154 (631)
368 PF10647 Gmad1: Lipoprotein Lp 97.3 0.051 1.1E-06 42.5 18.9 154 105-287 25-185 (253)
369 PRK11138 outer membrane biogen 97.3 0.06 1.3E-06 45.2 18.0 139 81-234 168-314 (394)
370 KOG2079 Vacuolar assembly/sort 97.2 0.0022 4.7E-08 57.9 8.8 106 114-232 98-203 (1206)
371 PHA02713 hypothetical protein; 97.2 0.047 1E-06 48.0 16.6 67 67-135 303-377 (557)
372 PF00780 CNH: CNH domain; Int 97.1 0.11 2.3E-06 41.2 18.1 153 66-235 5-168 (275)
373 COG3490 Uncharacterized protei 97.0 0.075 1.6E-06 41.3 14.1 103 59-171 70-180 (366)
374 PF12894 Apc4_WD40: Anaphase-p 97.0 0.0032 6.9E-08 34.6 5.1 34 56-95 11-44 (47)
375 COG3386 Gluconolactonase [Carb 97.0 0.081 1.7E-06 42.5 15.0 145 57-207 111-264 (307)
376 PF06433 Me-amine-dh_H: Methyl 97.0 0.13 2.9E-06 41.3 20.5 132 83-234 17-167 (342)
377 PF08728 CRT10: CRT10; InterP 97.0 0.15 3.3E-06 45.3 17.6 124 154-297 102-246 (717)
378 PF12894 Apc4_WD40: Anaphase-p 97.0 0.0043 9.4E-08 34.0 5.4 32 151-182 10-41 (47)
379 PF04841 Vps16_N: Vps16, N-ter 97.0 0.19 4.1E-06 42.4 22.1 154 57-234 81-248 (410)
380 PF05096 Glu_cyclase_2: Glutam 96.9 0.12 2.6E-06 40.1 21.6 188 59-286 47-250 (264)
381 PF08728 CRT10: CRT10; InterP 96.9 0.16 3.5E-06 45.2 17.0 127 105-232 102-246 (717)
382 PF15390 DUF4613: Domain of un 96.9 0.24 5.2E-06 42.6 18.5 163 51-233 14-187 (671)
383 PF10168 Nup88: Nuclear pore c 96.9 0.33 7.1E-06 43.9 20.7 86 103-188 84-185 (717)
384 KOG2444 WD40 repeat protein [G 96.8 0.0079 1.7E-07 44.8 7.2 104 68-183 70-178 (238)
385 PF02897 Peptidase_S9_N: Proly 96.8 0.27 5.8E-06 41.7 26.6 122 58-184 125-262 (414)
386 KOG4649 PQQ (pyrrolo-quinoline 96.8 0.16 3.4E-06 39.0 18.9 123 68-207 23-145 (354)
387 PF10647 Gmad1: Lipoprotein Lp 96.8 0.19 4E-06 39.4 16.3 150 58-222 25-185 (253)
388 COG3386 Gluconolactonase [Carb 96.7 0.25 5.4E-06 39.8 20.4 193 56-288 65-277 (307)
389 PF14870 PSII_BNR: Photosynthe 96.7 0.25 5.4E-06 39.6 20.2 159 54-229 142-301 (302)
390 PF15390 DUF4613: Domain of un 96.6 0.15 3.2E-06 43.8 14.3 152 103-295 19-184 (671)
391 KOG3630 Nuclear pore complex, 96.5 0.029 6.4E-07 51.4 10.1 149 50-209 93-255 (1405)
392 PRK10115 protease 2; Provision 96.5 0.61 1.3E-05 42.3 24.5 119 57-182 127-255 (686)
393 KOG4441 Proteins containing BT 96.5 0.32 6.9E-06 43.0 16.3 157 59-234 325-501 (571)
394 PF12234 Rav1p_C: RAVE protein 96.5 0.21 4.5E-06 44.1 14.7 128 46-182 19-156 (631)
395 KOG4499 Ca2+-binding protein R 96.4 0.26 5.7E-06 37.3 13.3 148 56-208 108-264 (310)
396 PHA02713 hypothetical protein; 96.4 0.11 2.3E-06 45.9 13.0 152 67-234 351-535 (557)
397 cd00216 PQQ_DH Dehydrogenases 96.4 0.55 1.2E-05 40.8 17.8 102 81-190 69-191 (488)
398 KOG1916 Nuclear protein, conta 96.4 0.0024 5.2E-08 56.6 2.5 125 55-187 179-328 (1283)
399 PHA03098 kelch-like protein; P 96.3 0.66 1.4E-05 40.9 18.4 110 67-185 294-417 (534)
400 COG3823 Glutamine cyclotransfe 96.3 0.28 6.2E-06 36.4 12.8 106 67-185 55-161 (262)
401 PF07995 GSDH: Glucose / Sorbo 96.3 0.49 1.1E-05 38.8 24.2 108 58-172 3-133 (331)
402 PF14727 PHTB1_N: PTHB1 N-term 96.2 0.64 1.4E-05 39.1 17.7 154 115-297 37-204 (418)
403 PF05694 SBP56: 56kDa selenium 96.1 0.62 1.3E-05 38.9 14.8 128 59-188 183-348 (461)
404 KOG4441 Proteins containing BT 96.1 0.51 1.1E-05 41.8 15.4 153 65-234 282-454 (571)
405 TIGR02604 Piru_Ver_Nterm putat 96.0 0.79 1.7E-05 38.2 15.4 154 57-221 14-202 (367)
406 KOG1897 Damage-specific DNA bi 95.9 1.4 3E-05 40.5 19.8 159 59-233 777-943 (1096)
407 PF00780 CNH: CNH domain; Int 95.8 0.74 1.6E-05 36.5 16.8 132 114-270 6-148 (275)
408 KOG3630 Nuclear pore complex, 95.8 0.24 5.3E-06 45.8 11.9 145 104-272 101-255 (1405)
409 KOG2377 Uncharacterized conser 95.7 0.54 1.2E-05 39.3 12.7 139 107-272 26-165 (657)
410 PF10168 Nup88: Nuclear pore c 95.6 1.2 2.6E-05 40.5 15.8 79 152-233 84-180 (717)
411 COG5167 VID27 Protein involved 95.6 0.56 1.2E-05 39.8 12.7 145 66-233 477-633 (776)
412 PHA02790 Kelch-like protein; P 95.6 1.4 3E-05 38.2 18.6 110 67-185 271-387 (480)
413 PF10313 DUF2415: Uncharacteri 95.5 0.084 1.8E-06 28.1 5.1 31 57-92 1-34 (43)
414 PF10313 DUF2415: Uncharacteri 95.4 0.079 1.7E-06 28.2 4.8 31 153-183 1-34 (43)
415 KOG1916 Nuclear protein, conta 95.4 0.015 3.3E-07 51.9 3.2 146 82-233 110-266 (1283)
416 KOG2377 Uncharacterized conser 95.2 0.51 1.1E-05 39.4 11.1 105 54-171 64-172 (657)
417 PF14655 RAB3GAP2_N: Rab3 GTPa 95.2 1.6 3.6E-05 36.7 22.2 89 61-162 6-118 (415)
418 PHA03098 kelch-like protein; P 95.1 2.1 4.6E-05 37.7 16.0 151 67-234 342-513 (534)
419 PF12657 TFIIIC_delta: Transcr 95.1 0.21 4.6E-06 36.5 8.2 31 153-183 86-122 (173)
420 COG3204 Uncharacterized protei 94.9 1.4 3.1E-05 34.7 17.3 124 99-234 81-212 (316)
421 PF14655 RAB3GAP2_N: Rab3 GTPa 94.9 0.98 2.1E-05 38.0 12.2 81 149-234 304-400 (415)
422 PF14583 Pectate_lyase22: Olig 94.7 2.2 4.7E-05 35.4 19.0 154 63-233 42-223 (386)
423 KOG1900 Nuclear pore complex, 94.6 1.6 3.5E-05 41.4 13.8 167 55-234 77-274 (1311)
424 KOG2280 Vacuolar assembly/sort 94.6 3.3 7.1E-05 37.1 17.5 51 82-134 63-113 (829)
425 COG5276 Uncharacterized conser 94.6 1.8 3.9E-05 34.2 19.1 140 103-272 86-225 (370)
426 KOG1900 Nuclear pore complex, 94.5 0.65 1.4E-05 43.9 11.2 154 122-297 96-272 (1311)
427 COG5167 VID27 Protein involved 94.5 1.3 2.9E-05 37.7 11.8 145 114-297 478-632 (776)
428 PF05096 Glu_cyclase_2: Glutam 94.4 1.9 4.1E-05 33.7 13.2 156 95-270 35-194 (264)
429 PRK13684 Ycf48-like protein; P 94.2 2.6 5.7E-05 34.6 17.6 157 56-231 172-330 (334)
430 PRK13684 Ycf48-like protein; P 94.0 3 6.5E-05 34.3 21.2 156 103-295 172-329 (334)
431 KOG2247 WD40 repeat-containing 93.9 0.0076 1.6E-07 50.0 -1.8 147 104-291 35-182 (615)
432 KOG1983 Tomosyn and related SN 93.9 1.4 3E-05 41.8 12.3 34 54-92 33-66 (993)
433 PF07569 Hira: TUP1-like enhan 93.8 0.76 1.7E-05 35.1 8.8 64 65-134 19-96 (219)
434 PF07995 GSDH: Glucose / Sorbo 93.7 3.3 7.2E-05 34.0 13.7 52 155-208 4-59 (331)
435 cd00216 PQQ_DH Dehydrogenases 93.7 4.4 9.5E-05 35.3 19.3 133 83-235 256-427 (488)
436 PF07569 Hira: TUP1-like enhan 93.7 0.44 9.5E-06 36.4 7.4 73 111-184 18-97 (219)
437 PF14781 BBS2_N: Ciliary BBSom 93.7 1.6 3.4E-05 30.1 12.4 116 109-232 4-125 (136)
438 PF12657 TFIIIC_delta: Transcr 93.7 0.97 2.1E-05 33.1 8.9 36 198-233 86-122 (173)
439 PF14781 BBS2_N: Ciliary BBSom 93.6 1.6 3.4E-05 30.1 11.7 75 158-234 4-83 (136)
440 PF08801 Nucleoporin_N: Nup133 93.5 4.3 9.2E-05 34.6 15.3 30 199-233 191-220 (422)
441 PF14761 HPS3_N: Hermansky-Pud 93.3 2.7 5.8E-05 31.7 13.5 106 116-234 29-165 (215)
442 KOG4499 Ca2+-binding protein R 93.2 2.9 6.2E-05 31.9 10.5 93 59-162 160-263 (310)
443 PF14583 Pectate_lyase22: Olig 93.1 4.5 9.7E-05 33.6 14.2 109 88-207 15-132 (386)
444 PF12768 Rax2: Cortical protei 93.0 3.9 8.4E-05 32.6 14.8 119 82-208 15-147 (281)
445 TIGR02604 Piru_Ver_Nterm putat 92.9 4.8 0.0001 33.6 16.0 100 105-209 15-135 (367)
446 PF08801 Nucleoporin_N: Nup133 92.8 5.5 0.00012 34.0 14.3 30 261-297 190-219 (422)
447 PHA02790 Kelch-like protein; P 92.7 6.3 0.00014 34.3 13.8 145 67-234 318-472 (480)
448 KOG2247 WD40 repeat-containing 92.6 0.013 2.7E-07 48.8 -2.5 135 57-209 35-171 (615)
449 KOG4460 Nuclear pore complex, 92.5 4.6 9.9E-05 34.8 11.9 84 104-187 104-203 (741)
450 KOG4460 Nuclear pore complex, 91.7 8 0.00017 33.4 13.1 79 153-233 104-199 (741)
451 COG4590 ABC-type uncharacteriz 91.5 2 4.4E-05 36.1 8.7 166 52-235 216-389 (733)
452 TIGR02276 beta_rpt_yvtn 40-res 91.3 1.2 2.6E-05 23.3 5.3 32 66-101 1-32 (42)
453 PF02333 Phytase: Phytase; In 91.1 8.1 0.00018 32.2 22.2 201 67-296 67-289 (381)
454 PF11715 Nup160: Nucleoporin N 90.9 3.6 7.9E-05 36.4 10.7 77 113-189 156-255 (547)
455 COG5276 Uncharacterized conser 90.4 7.7 0.00017 30.9 20.4 155 56-234 86-243 (370)
456 PF07676 PD40: WD40-like Beta 90.3 1.5 3.3E-05 22.6 5.0 26 51-76 3-28 (39)
457 PF07250 Glyoxal_oxid_N: Glyox 89.9 5.2 0.00011 31.1 9.3 121 63-188 73-203 (243)
458 PF11635 Med16: Mediator compl 89.7 17 0.00037 33.7 20.5 82 198-292 260-345 (753)
459 KOG1898 Splicing factor 3b, su 88.1 24 0.00052 33.4 16.3 159 58-233 879-1049(1205)
460 TIGR03606 non_repeat_PQQ dehyd 88.0 16 0.00035 31.4 15.4 61 50-115 23-90 (454)
461 PLN00033 photosystem II stabil 87.7 16 0.00035 30.9 17.3 151 59-229 241-396 (398)
462 PLN02153 epithiospecifier prot 87.7 14 0.00031 30.4 18.4 28 67-94 85-112 (341)
463 PF02897 Peptidase_S9_N: Proly 87.5 17 0.00036 30.9 24.2 162 61-232 174-357 (414)
464 TIGR03606 non_repeat_PQQ dehyd 86.8 19 0.00042 30.9 13.6 60 104-164 30-90 (454)
465 PF14761 HPS3_N: Hermansky-Pud 86.8 12 0.00025 28.4 15.3 140 82-231 37-213 (215)
466 KOG2280 Vacuolar assembly/sort 86.7 24 0.00053 32.0 13.7 153 57-234 84-248 (829)
467 PF10214 Rrn6: RNA polymerase 86.4 28 0.00062 32.5 18.6 167 54-233 77-277 (765)
468 TIGR03075 PQQ_enz_alc_DH PQQ-d 86.3 23 0.0005 31.3 22.9 53 84-136 272-336 (527)
469 PF13449 Phytase-like: Esteras 86.3 17 0.00037 29.8 19.2 114 103-222 19-166 (326)
470 PF11715 Nup160: Nucleoporin N 86.1 4.9 0.00011 35.6 8.3 74 162-236 156-252 (547)
471 TIGR03548 mutarot_permut cycli 85.2 19 0.00041 29.4 17.8 112 67-185 72-197 (323)
472 KOG1897 Damage-specific DNA bi 84.9 35 0.00076 32.2 21.9 122 104-234 488-615 (1096)
473 TIGR03118 PEPCTERM_chp_1 conse 84.8 19 0.00041 29.0 22.2 117 59-182 25-170 (336)
474 COG4590 ABC-type uncharacteriz 84.5 9.5 0.00021 32.3 8.4 163 99-297 216-386 (733)
475 PF03088 Str_synth: Strictosid 84.4 8.3 0.00018 24.6 8.7 60 61-121 2-74 (89)
476 PF05935 Arylsulfotrans: Aryls 83.8 29 0.00062 30.3 16.1 79 82-171 127-208 (477)
477 PF07676 PD40: WD40-like Beta 83.7 4.2 9.1E-05 20.9 4.3 30 259-294 7-38 (39)
478 PF12768 Rax2: Cortical protei 83.5 21 0.00046 28.5 13.3 93 125-231 16-122 (281)
479 PF07250 Glyoxal_oxid_N: Glyox 83.0 20 0.00044 27.9 11.4 142 85-234 48-199 (243)
480 TIGR03075 PQQ_enz_alc_DH PQQ-d 82.3 35 0.00077 30.2 18.1 28 163-190 471-498 (527)
481 COG5290 IkappaB kinase complex 81.4 6.8 0.00015 35.6 6.8 96 106-210 249-349 (1243)
482 COG4257 Vgb Streptogramin lyas 80.7 26 0.00057 27.8 12.1 104 105-221 63-166 (353)
483 KOG1896 mRNA cleavage and poly 80.3 60 0.0013 31.6 17.3 185 83-296 1004-1212(1366)
484 PF14779 BBS1: Ciliary BBSome 80.1 26 0.00056 27.5 8.9 77 196-294 175-255 (257)
485 COG5290 IkappaB kinase complex 79.9 51 0.0011 30.5 11.7 72 156-234 250-326 (1243)
486 TIGR03118 PEPCTERM_chp_1 conse 79.2 32 0.00069 27.8 14.0 127 106-234 25-172 (336)
487 PLN00033 photosystem II stabil 78.0 42 0.00091 28.5 21.8 152 106-294 241-396 (398)
488 COG4257 Vgb Streptogramin lyas 78.0 33 0.00071 27.3 15.0 151 56-234 61-220 (353)
489 KOG3616 Selective LIM binding 77.1 9.5 0.00021 34.6 6.4 70 152-232 14-83 (1636)
490 PLN02193 nitrile-specifier pro 76.0 53 0.0011 28.6 18.2 112 67-186 228-355 (470)
491 smart00564 PQQ beta-propeller 75.5 7.1 0.00015 18.9 3.4 24 165-188 7-30 (33)
492 PF02333 Phytase: Phytase; In 75.5 48 0.001 27.9 21.5 148 83-234 127-292 (381)
493 PF12341 DUF3639: Protein of u 74.5 7.8 0.00017 18.3 3.5 25 199-230 3-27 (27)
494 PF10395 Utp8: Utp8 family; I 74.3 69 0.0015 29.1 16.2 165 56-231 129-304 (670)
495 PF10214 Rrn6: RNA polymerase 74.2 78 0.0017 29.7 21.2 128 101-235 77-235 (765)
496 KOG3616 Selective LIM binding 71.7 16 0.00035 33.2 6.5 70 103-182 14-83 (1636)
497 PF11725 AvrE: Pathogenicity f 71.2 25 0.00054 35.2 8.0 153 54-234 360-518 (1774)
498 COG5308 NUP170 Nuclear pore co 71.1 95 0.0021 29.3 15.6 145 82-234 101-277 (1263)
499 TIGR03548 mutarot_permut cycli 71.0 56 0.0012 26.7 12.5 68 67-135 123-196 (323)
500 PF13570 PQQ_3: PQQ-like domai 70.9 9.6 0.00021 19.7 3.3 21 163-183 20-40 (40)
No 1
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8.4e-46 Score=284.12 Aligned_cols=252 Identities=21% Similarity=0.309 Sum_probs=232.3
Q ss_pred cccccceeeeecCcccccccCCCCCceeeeccCCC-ccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCC
Q 037555 2 YAATRETVERHGNDGLDTLESVPDAVPAVFTEPPI-EDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGK 69 (298)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~ 69 (298)
|++..+.++..+.+.+.+|.+|...|.++.|.|-. ...++++ ++|+ ++..|.+|...|..++|+|+|+
T Consensus 195 wsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~ 274 (459)
T KOG0272|consen 195 WSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGK 274 (459)
T ss_pred cCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCc
Confidence 89999999999999999999999999999999773 5567776 5774 5778999999999999999999
Q ss_pred EEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEee
Q 037555 70 LVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQE 149 (298)
Q Consensus 70 ~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 149 (298)
+|+++|. |.+-++||++++..+....+|...|.+++|.|||.++++|+.|..-+|||+++ +..+..+.
T Consensus 275 ~L~Tasf-----D~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt-------gr~im~L~ 342 (459)
T KOG0272|consen 275 FLGTASF-----DSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT-------GRCIMFLA 342 (459)
T ss_pred eeeeccc-----ccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeeccc-------CcEEEEec
Confidence 9999976 89999999999999888899999999999999999999999999999999998 77888999
Q ss_pred ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEE
Q 037555 150 AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELW 229 (298)
Q Consensus 150 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vw 229 (298)
+|..+|.+++|+|+|..||+|+.|++++|||++....+. .+++|..-|+.+.|.|... .+|++++.|+.++||
T Consensus 343 gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly---~ipAH~nlVS~Vk~~p~~g----~fL~TasyD~t~kiW 415 (459)
T KOG0272|consen 343 GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELY---TIPAHSNLVSQVKYSPQEG----YFLVTASYDNTVKIW 415 (459)
T ss_pred ccccceeeEeECCCceEEeecCCCCcEEEeeecccccce---ecccccchhhheEecccCC----eEEEEcccCcceeee
Confidence 999999999999999999999999999999999888766 8889999999999999442 899999999999999
Q ss_pred EeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555 230 SISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ 295 (298)
Q Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~ 295 (298)
..++. .+++. +.+|.+.|.+++.++++ .+++|++.|.++++|.
T Consensus 416 s~~~~-------------~~~ks---LaGHe~kV~s~Dis~d~-------~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 416 STRTW-------------SPLKS---LAGHEGKVISLDISPDS-------QAIATSSFDRTIKLWR 458 (459)
T ss_pred cCCCc-------------ccchh---hcCCccceEEEEeccCC-------ceEEEeccCceeeecc
Confidence 98876 44444 67999999999999999 8999999999999995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-42 Score=264.14 Aligned_cols=242 Identities=22% Similarity=0.348 Sum_probs=204.2
Q ss_pred CcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCc
Q 037555 14 NDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAA 82 (298)
Q Consensus 14 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d 82 (298)
-.+...+.||.++|.++.|.| .+..++++ ++|+ +..+.++|...|.|++|+|||+.||+|+. |
T Consensus 105 trCssS~~GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~-----d 178 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSK-----D 178 (480)
T ss_pred ceeccccCCCCCcEEEEEecC-CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhcccc-----C
Confidence 356788999999999999995 88888887 6886 47888999999999999999999999976 9
Q ss_pred eEEEEEEcCCceee-eccccccccEEEEEEcC-----CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceE
Q 037555 83 AEIWLWEVGSWKAM-GRLQSHSLTVTQIRFSH-----DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIW 156 (298)
Q Consensus 83 ~~i~vw~~~~~~~~-~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 156 (298)
|.|++||..+++.+ ..+.+|...|++++|.| ..++|++++.||.++|||+.. ...+..+.+|..+|+
T Consensus 179 g~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~-------~~~~~~lsgHT~~VT 251 (480)
T KOG0271|consen 179 GSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL-------GTCVRTLSGHTASVT 251 (480)
T ss_pred CeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC-------ceEEEEeccCccceE
Confidence 99999999998776 56899999999999987 556999999999999999987 677889999999999
Q ss_pred EEEEccCCCEEEEeeCCCeEEEEEccCCccee------------------------------------------------
Q 037555 157 SCSWNPFGHEFATGSRDKTVKIWAVENKSSVK------------------------------------------------ 188 (298)
Q Consensus 157 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~------------------------------------------------ 188 (298)
|++|--+ .+|++|+.|++|++|+...+....
T Consensus 252 CvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~ 330 (480)
T KOG0271|consen 252 CVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEA 330 (480)
T ss_pred EEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHH
Confidence 9999844 589999999999999988754433
Q ss_pred ----------------------------eeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccccccc
Q 037555 189 ----------------------------QILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVS 240 (298)
Q Consensus 189 ----------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~ 240 (298)
++....+|+.-|..+.|+|++ .++++++-|..|++|+.+++
T Consensus 331 ~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~-----r~IASaSFDkSVkLW~g~tG------ 399 (480)
T KOG0271|consen 331 VLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDG-----RYIASASFDKSVKLWDGRTG------ 399 (480)
T ss_pred hhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCc-----cEEEEeecccceeeeeCCCc------
Confidence 111223455556666666666 68888888888888888877
Q ss_pred CCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 241 TPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+.+.. +++|-.+|..++|+.|. ++|++|+.|.++++|+++
T Consensus 400 -------k~las---fRGHv~~VYqvawsaDs-------RLlVS~SkDsTLKvw~V~ 439 (480)
T KOG0271|consen 400 -------KFLAS---FRGHVAAVYQVAWSADS-------RLLVSGSKDSTLKVWDVR 439 (480)
T ss_pred -------chhhh---hhhccceeEEEEeccCc-------cEEEEcCCCceEEEEEee
Confidence 33333 77999999999999999 899999999999999986
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.7e-41 Score=254.23 Aligned_cols=253 Identities=22% Similarity=0.352 Sum_probs=220.3
Q ss_pred ccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC------ceEEeccCCCceEEEEEcC-----C
Q 037555 5 TRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP------ESHKLYGHGNELFSLCCDH-----Q 67 (298)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~------~~~~~~~h~~~v~~~~~s~-----~ 67 (298)
..|.++..+...+.+.++|.+-|.++.++ |+++.++++ .+|+ ....|.+|+..|++++|.| .
T Consensus 138 TvR~WD~~TeTp~~t~KgH~~WVlcvaws-PDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~ 216 (480)
T KOG0271|consen 138 TVRLWDLDTETPLFTCKGHKNWVLCVAWS-PDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPP 216 (480)
T ss_pred eEEeeccCCCCcceeecCCccEEEEEEEC-CCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCC
Confidence 46788899999999999999999999999 788899887 4675 3678999999999999965 5
Q ss_pred CCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc-------
Q 037555 68 GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI------- 140 (298)
Q Consensus 68 ~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~------- 140 (298)
.++||++++ ||.|+|||+..++++..+.+|+.+|+|++|--+| +|++++.|++|++|+...+.....
T Consensus 217 ~r~las~sk-----Dg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahw 290 (480)
T KOG0271|consen 217 CRRLASSSK-----DGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHW 290 (480)
T ss_pred ccceecccC-----CCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchh
Confidence 678999965 9999999999999999999999999999997554 899999999999999765320000
Q ss_pred -----------------------------------------------------------------ceeeeEEeeccCCce
Q 037555 141 -----------------------------------------------------------------DYQLIARQEAHKRII 155 (298)
Q Consensus 141 -----------------------------------------------------------------~~~~~~~~~~~~~~v 155 (298)
..+++....+|...|
T Consensus 291 vN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lV 370 (480)
T KOG0271|consen 291 VNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALV 370 (480)
T ss_pred eeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhe
Confidence 122334556788999
Q ss_pred EEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecc
Q 037555 156 WSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNR 235 (298)
Q Consensus 156 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 235 (298)
+.+.|+||++++|+++.|..|++||.++++.+. .+.+|-.+|+.++|+.+. .+|++|+.|.++++|++++.+
T Consensus 371 n~V~fSPd~r~IASaSFDkSVkLW~g~tGk~la---sfRGHv~~VYqvawsaDs-----RLlVS~SkDsTLKvw~V~tkK 442 (480)
T KOG0271|consen 371 NHVSFSPDGRYIASASFDKSVKLWDGRTGKFLA---SFRGHVAAVYQVAWSADS-----RLLVSGSKDSTLKVWDVRTKK 442 (480)
T ss_pred eeEEECCCccEEEEeecccceeeeeCCCcchhh---hhhhccceeEEEEeccCc-----cEEEEcCCCceEEEEEeeeee
Confidence 999999999999999999999999999999888 888999999999999998 799999999999999999863
Q ss_pred cccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555 236 TNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ 295 (298)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~ 295 (298)
... .+.+|...|.++.|+||| ..+++++.|..+++|.
T Consensus 443 -------------l~~---DLpGh~DEVf~vDwspDG-------~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 443 -------------LKQ---DLPGHADEVFAVDWSPDG-------QRVASGGKDKVLRLWR 479 (480)
T ss_pred -------------ecc---cCCCCCceEEEEEecCCC-------ceeecCCCceEEEeec
Confidence 222 277899999999999999 8999999999999995
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-41 Score=260.70 Aligned_cols=233 Identities=18% Similarity=0.309 Sum_probs=207.0
Q ss_pred cCCCCCceeeeccCCCccccccc------CCC-----CceEEeccCCCceEEEEEcCC--CCEEEeEeccCCCCceEEEE
Q 037555 21 ESVPDAVPAVFTEPPIEDQLAWH------TLW-----PESHKLYGHGNELFSLCCDHQ--GKLVASSCKAQSTAAAEIWL 87 (298)
Q Consensus 21 ~~~~~~v~~~~~~~~~~~~~~~~------~~~-----~~~~~~~~h~~~v~~~~~s~~--~~~l~~~~~~~~~~d~~i~v 87 (298)
.+-..++..+.|+ ++++.++++ ++| +.+.+|+||...|.++.|+|. +..||+++ .||++++
T Consensus 172 ~gd~rPis~~~fS-~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s-----~Dgtvkl 245 (459)
T KOG0272|consen 172 VGDTRPISGCSFS-RDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATAS-----ADGTVKL 245 (459)
T ss_pred ccCCCcceeeEee-cCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeec-----cCCceee
Confidence 3445567777777 677788876 466 368999999999999999996 66899994 5999999
Q ss_pred EEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEE
Q 037555 88 WEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEF 167 (298)
Q Consensus 88 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 167 (298)
|++.+..++..+.+|...|..++|+|+|++|++++.|.+-++||+.+ ...+....+|...|.+++|+|+|..+
T Consensus 246 w~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~t-------k~ElL~QEGHs~~v~~iaf~~DGSL~ 318 (459)
T KOG0272|consen 246 WKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLET-------KSELLLQEGHSKGVFSIAFQPDGSLA 318 (459)
T ss_pred eccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhccccc-------chhhHhhcccccccceeEecCCCcee
Confidence 99998899999999999999999999999999999999999999998 45566778999999999999999999
Q ss_pred EEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCc
Q 037555 168 ATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTA 247 (298)
Q Consensus 168 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~ 247 (298)
++|+.|..-+|||+++++++. .+.+|..+|.+++|+|+| ..|+||+.|++++|||++..
T Consensus 319 ~tGGlD~~~RvWDlRtgr~im---~L~gH~k~I~~V~fsPNG-----y~lATgs~Dnt~kVWDLR~r------------- 377 (459)
T KOG0272|consen 319 ATGGLDSLGRVWDLRTGRCIM---FLAGHIKEILSVAFSPNG-----YHLATGSSDNTCKVWDLRMR------------- 377 (459)
T ss_pred eccCccchhheeecccCcEEE---EecccccceeeEeECCCc-----eEEeecCCCCcEEEeeeccc-------------
Confidence 999999999999999999988 778899999999999999 89999999999999999976
Q ss_pred ceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 248 NIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 248 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
..+.. ..+|..-|+.++|+|.. +.+|+|++.|++++||.-
T Consensus 378 ~~ly~---ipAH~nlVS~Vk~~p~~------g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 378 SELYT---IPAHSNLVSQVKYSPQE------GYFLVTASYDNTVKIWST 417 (459)
T ss_pred cccee---cccccchhhheEecccC------CeEEEEcccCcceeeecC
Confidence 33333 66899999999999943 289999999999999974
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-39 Score=236.33 Aligned_cols=236 Identities=19% Similarity=0.312 Sum_probs=202.3
Q ss_pred ccccccCCCCCceeeeccCCCccccccc------CCCC----------ceEEeccCCCceEEEEEcCCCCEEEeEeccCC
Q 037555 16 GLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP----------ESHKLYGHGNELFSLCCDHQGKLVASSCKAQS 79 (298)
Q Consensus 16 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~----------~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~ 79 (298)
...++++|++.|..+...+...+.+.++ ..|+ .++.|+||...|..+..+++|++.++++.
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~sw--- 83 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASW--- 83 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccc---
Confidence 4567899999999998887655555554 1332 47889999999999999999999999965
Q ss_pred CCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeec--cCCceEE
Q 037555 80 TAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEA--HKRIIWS 157 (298)
Q Consensus 80 ~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~v~~ 157 (298)
|+++++||+.+++..+.|.+|...|.+++|++|.+.+++|+.|.+|++|+... .+..+... +.+.|.+
T Consensus 84 --D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g--------~ck~t~~~~~~~~WVsc 153 (315)
T KOG0279|consen 84 --DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG--------VCKYTIHEDSHREWVSC 153 (315)
T ss_pred --cceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc--------cEEEEEecCCCcCcEEE
Confidence 99999999999999999999999999999999999999999999999999874 33333333 3789999
Q ss_pred EEEccC--CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecc
Q 037555 158 CSWNPF--GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNR 235 (298)
Q Consensus 158 ~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 235 (298)
+.|+|+ ..+|++++.|++|++||+++.+... .+.+|...++.++++|+| .++++|+.||.+.+||++.+
T Consensus 154 vrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~---~~~gh~~~v~t~~vSpDG-----slcasGgkdg~~~LwdL~~~- 224 (315)
T KOG0279|consen 154 VRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT---TFIGHSGYVNTVTVSPDG-----SLCASGGKDGEAMLWDLNEG- 224 (315)
T ss_pred EEEcCCCCCcEEEEccCCceEEEEccCCcchhh---ccccccccEEEEEECCCC-----CEEecCCCCceEEEEEccCC-
Confidence 999997 6899999999999999999988777 788999999999999999 79999999999999999987
Q ss_pred cccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 236 TNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+.+..+ .|...|.+++|+|+. .+|+.+ .+..|+|||+.
T Consensus 225 ------------k~lysl----~a~~~v~sl~fspnr-------ywL~~a-t~~sIkIwdl~ 262 (315)
T KOG0279|consen 225 ------------KNLYSL----EAFDIVNSLCFSPNR-------YWLCAA-TATSIKIWDLE 262 (315)
T ss_pred ------------ceeEec----cCCCeEeeEEecCCc-------eeEeec-cCCceEEEecc
Confidence 555544 488999999999997 555554 45669999975
No 6
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1e-39 Score=268.54 Aligned_cols=206 Identities=24% Similarity=0.480 Sum_probs=193.1
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEE
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFS 128 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 128 (298)
.+++.||.++|..+.|+|+.++|+++ ++|+++++|.+.+..++..+++|..+|.++.|+|.|-+||+++.|++-+
T Consensus 444 ~~~L~GH~GPVyg~sFsPd~rfLlSc-----SED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tAr 518 (707)
T KOG0263|consen 444 SRTLYGHSGPVYGCSFSPDRRFLLSC-----SEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTAR 518 (707)
T ss_pred eEEeecCCCceeeeeecccccceeec-----cCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceee
Confidence 56799999999999999999999999 5699999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeec
Q 037555 129 VFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGL 208 (298)
Q Consensus 129 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 208 (298)
+|.... ..+.+.+.+|.+.|.|+.|+|+.+++++||.|.+||+||+.++...+ .+.+|.++|.+++|+|+
T Consensus 519 LWs~d~-------~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR---iF~GH~~~V~al~~Sp~ 588 (707)
T KOG0263|consen 519 LWSTDH-------NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR---IFTGHKGPVTALAFSPC 588 (707)
T ss_pred eeeccc-------CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEE---EecCCCCceEEEEEcCC
Confidence 999987 67788899999999999999999999999999999999999999887 77899999999999999
Q ss_pred cccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCC
Q 037555 209 DRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD 288 (298)
Q Consensus 209 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d 288 (298)
| .+|++|+.||.|.+||+.++ ..+.. +.+|.+.|.+|.|+.++ ..||++|.|
T Consensus 589 G-----r~LaSg~ed~~I~iWDl~~~-------------~~v~~---l~~Ht~ti~SlsFS~dg-------~vLasgg~D 640 (707)
T KOG0263|consen 589 G-----RYLASGDEDGLIKIWDLANG-------------SLVKQ---LKGHTGTIYSLSFSRDG-------NVLASGGAD 640 (707)
T ss_pred C-----ceEeecccCCcEEEEEcCCC-------------cchhh---hhcccCceeEEEEecCC-------CEEEecCCC
Confidence 9 79999999999999999987 33333 66799999999999999 899999999
Q ss_pred CcEEEeEec
Q 037555 289 NTVRVFQVN 297 (298)
Q Consensus 289 ~~i~iw~~~ 297 (298)
++|++||+.
T Consensus 641 nsV~lWD~~ 649 (707)
T KOG0263|consen 641 NSVRLWDLT 649 (707)
T ss_pred CeEEEEEch
Confidence 999999985
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.6e-37 Score=222.56 Aligned_cols=255 Identities=15% Similarity=0.223 Sum_probs=216.3
Q ss_pred cccccceeeeecCcccccccCCCCCceeeeccCCCccccccc-----CCC------C-ceEEeccCCCceEEEEEcCCCC
Q 037555 2 YAATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH-----TLW------P-ESHKLYGHGNELFSLCCDHQGK 69 (298)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~------~-~~~~~~~h~~~v~~~~~s~~~~ 69 (298)
|+..+|.++..+|.+..++......|..+... |+...++.+ +++ | ++.++.+|+..|+++.|..+|+
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiT-pdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgr 96 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPDSQVNRLEIT-PDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGR 96 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCccceeeEEEc-CCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCe
Confidence 78889999999999999999988999999888 555555555 233 2 6889999999999999999999
Q ss_pred EEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEee
Q 037555 70 LVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQE 149 (298)
Q Consensus 70 ~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 149 (298)
.+++| ++||+++|||++...+.+.++ |..+|+++..+|+...|++|..+|.|++||+.... ....+.
T Consensus 97 WMyTg-----seDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~-------c~~~li 163 (311)
T KOG0315|consen 97 WMYTG-----SEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENS-------CTHELI 163 (311)
T ss_pred EEEec-----CCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCc-------cccccC
Confidence 99999 569999999999877666666 88999999999999999999999999999998732 222222
Q ss_pred -ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCc---ceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCc
Q 037555 150 -AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKS---SVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGV 225 (298)
Q Consensus 150 -~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~ 225 (298)
.....|.++...|+|.+++.+...|..++|++-+.. .+.++..++.|+..+..+.++|++ ++|++++.|.+
T Consensus 164 Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~-----k~lat~ssdkt 238 (311)
T KOG0315|consen 164 PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDV-----KYLATCSSDKT 238 (311)
T ss_pred CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCC-----cEEEeecCCce
Confidence 234679999999999999999999999999997643 344555677899999999999999 89999999999
Q ss_pred EEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 226 IELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 226 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
++||+.+..- +... .+.+|...+++++||.|+ .+|+|++.|+.+++|++.
T Consensus 239 v~iwn~~~~~------------kle~---~l~gh~rWvWdc~FS~dg-------~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 239 VKIWNTDDFF------------KLEL---VLTGHQRWVWDCAFSADG-------EYLVTASSDHTARLWDLS 288 (311)
T ss_pred EEEEecCCce------------eeEE---EeecCCceEEeeeeccCc-------cEEEecCCCCceeecccc
Confidence 9999987541 1111 266899999999999999 899999999999999985
No 8
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-37 Score=233.08 Aligned_cols=250 Identities=20% Similarity=0.323 Sum_probs=226.1
Q ss_pred ccccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC------ceEEeccCCCceEEEEEcCCCCE
Q 037555 3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP------ESHKLYGHGNELFSLCCDHQGKL 70 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~------~~~~~~~h~~~v~~~~~s~~~~~ 70 (298)
++.++.++..+|+....|.||.++|..+.|. ..+..+++. .+|+ +++.+.+|...|.++.|-|.|.+
T Consensus 129 d~tikv~D~~tg~~e~~LrGHt~sv~di~~~-a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ 207 (406)
T KOG0295|consen 129 DATIKVFDTETGELERSLRGHTDSVFDISFD-ASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDH 207 (406)
T ss_pred CceEEEEEccchhhhhhhhccccceeEEEEe-cCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCe
Confidence 4678999999999999999999999999998 556666664 5775 46778899999999999999999
Q ss_pred EEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeec
Q 037555 71 VASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEA 150 (298)
Q Consensus 71 l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 150 (298)
++++++ |.+|+.|++.++-++.+|.+|...|..++.+.||.++++++.|.++++|-+.+ ..+...+..
T Consensus 208 ilS~sr-----D~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t-------~~~k~~lR~ 275 (406)
T KOG0295|consen 208 ILSCSR-----DNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVAT-------KQCKAELRE 275 (406)
T ss_pred eeeccc-----ccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEecc-------chhhhhhhc
Confidence 999965 89999999999999999999999999999999999999999999999999987 555677888
Q ss_pred cCCceEEEEEccCC---------------CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCcc
Q 037555 151 HKRIIWSCSWNPFG---------------HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHG 215 (298)
Q Consensus 151 ~~~~v~~~~~~~~~---------------~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (298)
|+.+|.+++|.|.. .++.+++.|++|++||+.++.++. ++.+|...|..++|+|.| .
T Consensus 276 hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~---tL~ghdnwVr~~af~p~G-----k 347 (406)
T KOG0295|consen 276 HEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLF---TLVGHDNWVRGVAFSPGG-----K 347 (406)
T ss_pred cccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEE---EEecccceeeeeEEcCCC-----e
Confidence 99999999997632 489999999999999999998888 888999999999999999 8
Q ss_pred EEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555 216 FLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ 295 (298)
Q Consensus 216 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~ 295 (298)
||+++.+|+++++||+++. +++..+. .|..-|++++|+.+. .+++||+-|.++++|.
T Consensus 348 yi~ScaDDktlrvwdl~~~-------------~cmk~~~---ah~hfvt~lDfh~~~-------p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 348 YILSCADDKTLRVWDLKNL-------------QCMKTLE---AHEHFVTSLDFHKTA-------PYVVTGSVDQTVKVWE 404 (406)
T ss_pred EEEEEecCCcEEEEEeccc-------------eeeeccC---CCcceeEEEecCCCC-------ceEEeccccceeeeee
Confidence 9999999999999999988 7777754 699999999999998 7999999999999997
Q ss_pred e
Q 037555 296 V 296 (298)
Q Consensus 296 ~ 296 (298)
-
T Consensus 405 c 405 (406)
T KOG0295|consen 405 C 405 (406)
T ss_pred c
Confidence 4
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-36 Score=220.90 Aligned_cols=250 Identities=18% Similarity=0.283 Sum_probs=202.5
Q ss_pred eeecCcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccC
Q 037555 10 ERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQ 78 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~ 78 (298)
+...|..+..+.||+..|..+... +++.+..++ ++|+ ..+.|.||...|++++|++|.+.+++|+.
T Consensus 49 d~~~G~~~r~~~GHsH~v~dv~~s-~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSr-- 125 (315)
T KOG0279|consen 49 DIKYGVPVRRLTGHSHFVSDVVLS-SDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSR-- 125 (315)
T ss_pred ccccCceeeeeeccceEecceEEc-cCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCC--
Confidence 566788899999999999999888 556555554 5775 36789999999999999999999999965
Q ss_pred CCCceEEEEEEcCCceeeecccc--ccccEEEEEEcCC--CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCc
Q 037555 79 STAAAEIWLWEVGSWKAMGRLQS--HSLTVTQIRFSHD--DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRI 154 (298)
Q Consensus 79 ~~~d~~i~vw~~~~~~~~~~~~~--~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 154 (298)
|.+|++|++... +..++.. +.+.|+|++|+|+ ..+|++++.|+++++||+++ .+....+.+|.+.
T Consensus 126 ---DkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-------~~l~~~~~gh~~~ 194 (315)
T KOG0279|consen 126 ---DKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-------CQLRTTFIGHSGY 194 (315)
T ss_pred ---cceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-------cchhhcccccccc
Confidence 999999999744 4444432 3789999999997 67999999999999999998 6677888899999
Q ss_pred eEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555 155 IWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 155 v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
++.++++|||.+.++|+.||.+.+||++.++.+. .+. +...|.+++|+|.. +.++...+..|+|||+.+.
T Consensus 195 v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~ly---sl~-a~~~v~sl~fspnr------ywL~~at~~sIkIwdl~~~ 264 (315)
T KOG0279|consen 195 VNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLY---SLE-AFDIVNSLCFSPNR------YWLCAATATSIKIWDLESK 264 (315)
T ss_pred EEEEEECCCCCEEecCCCCceEEEEEccCCceeE---ecc-CCCeEeeEEecCCc------eeEeeccCCceEEEeccch
Confidence 9999999999999999999999999999998866 554 78999999999986 4444445667999999987
Q ss_pred ccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 235 RTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
............. ..........+++|+++| ..|+++-.|+.|++|.+.
T Consensus 265 ~~v~~l~~d~~g~-------s~~~~~~~clslaws~dG-------~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 265 AVVEELKLDGIGP-------SSKAGDPICLSLAWSADG-------QTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hhhhhcccccccc-------ccccCCcEEEEEEEcCCC-------cEEEeeecCCcEEEEEee
Confidence 4433211110000 012234456789999999 899999999999999975
No 10
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=7e-36 Score=217.57 Aligned_cols=260 Identities=21% Similarity=0.326 Sum_probs=207.9
Q ss_pred ccccccCCCCCceeeeccCCCccccccc------CCCC--------ceEEe-ccCCCceEEEEEcCCCCEEEeEeccCCC
Q 037555 16 GLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP--------ESHKL-YGHGNELFSLCCDHQGKLVASSCKAQST 80 (298)
Q Consensus 16 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~--------~~~~~-~~h~~~v~~~~~s~~~~~l~~~~~~~~~ 80 (298)
.+..+++|.+.+..+++.|-.+..+++. ++|. +...+ .+|+..|.+++|+|.|++||+++.
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSF---- 81 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASF---- 81 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeec----
Confidence 4567889999999999996656666665 3443 33333 269999999999999999999966
Q ss_pred CceEEEEEEcCCc--eeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEE
Q 037555 81 AAAEIWLWEVGSW--KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC 158 (298)
Q Consensus 81 ~d~~i~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~ 158 (298)
|.++.||.-..+ +++.++.+|+..|.+++|+++|++||+|++|+.|.||.+..... ..+...+.+|...|..+
T Consensus 82 -D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE----fec~aVL~~HtqDVK~V 156 (312)
T KOG0645|consen 82 -DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE----FECIAVLQEHTQDVKHV 156 (312)
T ss_pred -cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc----EEEEeeeccccccccEE
Confidence 899999987644 67888999999999999999999999999999999999985433 77889999999999999
Q ss_pred EEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccc--
Q 037555 159 SWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRT-- 236 (298)
Q Consensus 159 ~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~-- 236 (298)
.|+|...+|++++.|++|++|+-.........+++.+|...|.+++|++.+ ..|+++++|+.|+||...+.-.
T Consensus 157 ~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G-----~rl~s~sdD~tv~Iw~~~~~~~~~ 231 (312)
T KOG0645|consen 157 IWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIG-----SRLVSCSDDGTVSIWRLYTDLSGM 231 (312)
T ss_pred EEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCC-----ceEEEecCCcceEeeeeccCcchh
Confidence 999999999999999999999887555455556888999999999999998 7999999999999998543211
Q ss_pred --cccc----------CCCCCCcceeee---------------eccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCC
Q 037555 237 --NDVS----------TPAPSTANIIIR---------------FDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADN 289 (298)
Q Consensus 237 --~~~~----------~~~~~~~~~~~~---------------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~ 289 (298)
...+ ..+.+ ..+.. ......|...|+++.|+|... ++|++|+.||
T Consensus 232 ~sr~~Y~v~W~~~~IaS~ggD--~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~------~~L~s~~DDG 303 (312)
T KOG0645|consen 232 HSRALYDVPWDNGVIASGGGD--DAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVS------NRLASGGDDG 303 (312)
T ss_pred cccceEeeeecccceEeccCC--CEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCC------CceeecCCCc
Confidence 0000 00000 00111 111346888999999999643 7999999999
Q ss_pred cEEEeEec
Q 037555 290 TVRVFQVN 297 (298)
Q Consensus 290 ~i~iw~~~ 297 (298)
.|++|.+.
T Consensus 304 ~v~~W~l~ 311 (312)
T KOG0645|consen 304 IVNFWELE 311 (312)
T ss_pred eEEEEEec
Confidence 99999985
No 11
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.8e-36 Score=221.17 Aligned_cols=249 Identities=18% Similarity=0.237 Sum_probs=213.2
Q ss_pred cccceeeeecCcccccccCCCCCceeeeccCCCcccccccCC------C-----------CceEEeccCCCceEEEEEcC
Q 037555 4 ATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHTL------W-----------PESHKLYGHGNELFSLCCDH 66 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------~-----------~~~~~~~~h~~~v~~~~~s~ 66 (298)
+.+=.|+.-+.+.++.+.-...-|-..+|. |.+..++.+-+ + +..+.+.+|++-+.|+.|-+
T Consensus 77 GklIvWDs~TtnK~haipl~s~WVMtCA~s-PSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d 155 (343)
T KOG0286|consen 77 GKLIVWDSFTTNKVHAIPLPSSWVMTCAYS-PSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD 155 (343)
T ss_pred CeEEEEEcccccceeEEecCceeEEEEEEC-CCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcC
Confidence 344456677777788888777888888888 66667666522 1 23567899999999999988
Q ss_pred CCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccCCCCccceeee
Q 037555 67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLI 145 (298)
Q Consensus 67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 145 (298)
|+ .|++++ .|.+.-+||+++++.+..|.+|.+.|.++.++| +++.+++|+.|+..++||++. ...+
T Consensus 156 D~-~ilT~S-----GD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~-------~~c~ 222 (343)
T KOG0286|consen 156 DN-HILTGS-----GDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRS-------GQCV 222 (343)
T ss_pred CC-ceEecC-----CCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccC-------ccee
Confidence 55 566673 489999999999999999999999999999999 999999999999999999998 6778
Q ss_pred EEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCc
Q 037555 146 ARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGV 225 (298)
Q Consensus 146 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~ 225 (298)
+.+.+|+..|++++|.|+|.-|++|++|++.++||+|..+.+..+. ......+|++++|+..| .+|++|..|..
T Consensus 223 qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys-~~~~~~gitSv~FS~SG-----RlLfagy~d~~ 296 (343)
T KOG0286|consen 223 QTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYS-HDSIICGITSVAFSKSG-----RLLFAGYDDFT 296 (343)
T ss_pred EeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeec-cCcccCCceeEEEcccc-----cEEEeeecCCc
Confidence 9999999999999999999999999999999999999988876443 23345789999999999 79999999999
Q ss_pred EEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555 226 IELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ 295 (298)
Q Consensus 226 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~ 295 (298)
+.+||.-.+ +.... +.+|...|+++..+||| ..++|++.|..+|||.
T Consensus 297 c~vWDtlk~-------------e~vg~---L~GHeNRvScl~~s~DG-------~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 297 CNVWDTLKG-------------ERVGV---LAGHENRVSCLGVSPDG-------MAVATGSWDSTLRIWA 343 (343)
T ss_pred eeEeecccc-------------ceEEE---eeccCCeeEEEEECCCC-------cEEEecchhHheeecC
Confidence 999999876 33333 55899999999999999 8999999999999994
No 12
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.8e-38 Score=240.26 Aligned_cols=237 Identities=18% Similarity=0.298 Sum_probs=209.8
Q ss_pred cccccCCCCCceeeeccCCCccccccc------CCCC----ceEEeccCC-CceEEEEEcCCCCEEEeEeccCCCCceEE
Q 037555 17 LDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP----ESHKLYGHG-NELFSLCCDHQGKLVASSCKAQSTAAAEI 85 (298)
Q Consensus 17 ~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~----~~~~~~~h~-~~v~~~~~s~~~~~l~~~~~~~~~~d~~i 85 (298)
-..+..|..+|.++.++ +.+..++++ +.|. .++.+..|. ..|++++|+|+...++++ ++|++|
T Consensus 131 EtilQaHDs~Vr~m~ws-~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~-----SdDg~i 204 (464)
T KOG0284|consen 131 ETILQAHDSPVRTMKWS-HNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTC-----SDDGTI 204 (464)
T ss_pred HHHhhhhcccceeEEEc-cCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEe-----cCCCeE
Confidence 34568999999999998 677777776 4664 355566666 899999999999999999 569999
Q ss_pred EEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCC
Q 037555 86 WLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGH 165 (298)
Q Consensus 86 ~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 165 (298)
+|||....+....+.+|.-.|.++.|+|...++++++.|..|++||.++ ..++..+..|...|..+.|+|+++
T Consensus 205 kiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprS-------g~cl~tlh~HKntVl~~~f~~n~N 277 (464)
T KOG0284|consen 205 KIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRS-------GSCLATLHGHKNTVLAVKFNPNGN 277 (464)
T ss_pred EEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCC-------cchhhhhhhccceEEEEEEcCCCC
Confidence 9999998888888999999999999999999999999999999999998 678899999999999999999999
Q ss_pred EEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCC
Q 037555 166 EFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPS 245 (298)
Q Consensus 166 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~ 245 (298)
+|++++.|..++++|+++.+.++ .+.+|...++++.|+|... .+|.+|+.||.|..|.+...
T Consensus 278 ~Llt~skD~~~kv~DiR~mkEl~---~~r~Hkkdv~~~~WhP~~~----~lftsgg~Dgsvvh~~v~~~----------- 339 (464)
T KOG0284|consen 278 WLLTGSKDQSCKVFDIRTMKELF---TYRGHKKDVTSLTWHPLNE----SLFTSGGSDGSVVHWVVGLE----------- 339 (464)
T ss_pred eeEEccCCceEEEEehhHhHHHH---Hhhcchhhheeeccccccc----cceeeccCCCceEEEecccc-----------
Confidence 99999999999999999877777 7888999999999999886 89999999999999998744
Q ss_pred CcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555 246 TANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ 295 (298)
Q Consensus 246 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~ 295 (298)
.++..+ -.+|...|++++|+|-| .+|++|+.|.++++|.
T Consensus 340 --~p~~~i--~~AHd~~iwsl~~hPlG-------hil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 340 --EPLGEI--PPAHDGEIWSLAYHPLG-------HILATGSNDRTVRFWT 378 (464)
T ss_pred --ccccCC--Ccccccceeeeeccccc-------eeEeecCCCcceeeec
Confidence 233333 34799999999999999 9999999999999995
No 13
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.9e-36 Score=234.80 Aligned_cols=244 Identities=20% Similarity=0.308 Sum_probs=203.5
Q ss_pred CCCCCceeeeccCCCccccccc------CCCCceE---------Eec------c----CCCceEEEEEcCCCCEEEeEec
Q 037555 22 SVPDAVPAVFTEPPIEDQLAWH------TLWPESH---------KLY------G----HGNELFSLCCDHQGKLVASSCK 76 (298)
Q Consensus 22 ~~~~~v~~~~~~~~~~~~~~~~------~~~~~~~---------~~~------~----h~~~v~~~~~s~~~~~l~~~~~ 76 (298)
.|...|.+.+++|.....++.+ ++|.... .|+ + -...|++++|+.+|.+||+|+
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~- 254 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS- 254 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee-
Confidence 3888999999997666555554 5665332 011 1 225699999999999999995
Q ss_pred cCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc----------------
Q 037555 77 AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI---------------- 140 (298)
Q Consensus 77 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---------------- 140 (298)
.||.+++|+.. |..+.++..|.++|.++.|+.+|++|++++.|+++.+||..++...+.
T Consensus 255 ----~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~ 329 (524)
T KOG0273|consen 255 ----EDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN 329 (524)
T ss_pred ----cCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC
Confidence 59999999986 778889999999999999999999999999999999999854331100
Q ss_pred ------------------ceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEE
Q 037555 141 ------------------DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTA 202 (298)
Q Consensus 141 ------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~ 202 (298)
...++.++.+|.++|.++.|+|.+.+|+++++|++++||......... .+..|...|..
T Consensus 330 ~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~---~l~~Hskei~t 406 (524)
T KOG0273|consen 330 DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH---DLQAHSKEIYT 406 (524)
T ss_pred ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh---hhhhhccceee
Confidence 234556777899999999999999999999999999999998887777 77789999999
Q ss_pred EEEeeccc----cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCc
Q 037555 203 LSWVGLDR----QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSR 278 (298)
Q Consensus 203 ~~~~~~~~----~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 278 (298)
+.|+|.++ ...+..+++++.|+.|++||+..+ .++.. +..|..+|.+++|+|++
T Consensus 407 ~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g-------------v~i~~---f~kH~~pVysvafS~~g------ 464 (524)
T KOG0273|consen 407 IKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG-------------VPIHT---LMKHQEPVYSVAFSPNG------ 464 (524)
T ss_pred EeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC-------------ceeEe---eccCCCceEEEEecCCC------
Confidence 99999886 223468999999999999999987 66666 44699999999999999
Q ss_pred ceEEEeeeCCCcEEEeEec
Q 037555 279 TMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 279 ~~~l~s~~~d~~i~iw~~~ 297 (298)
.++++|+.||.|.+|+.+
T Consensus 465 -~ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 465 -RYLASGSLDGCVHIWSTK 482 (524)
T ss_pred -cEEEecCCCCeeEecccc
Confidence 899999999999999875
No 14
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.3e-34 Score=211.05 Aligned_cols=214 Identities=22% Similarity=0.403 Sum_probs=188.0
Q ss_pred ceEEeccCCCceEEEEEcCC-CCEEEeEeccCCCCceEEEEEEcCC---ceeeecc-ccccccEEEEEEcCCCCEEEEEe
Q 037555 48 ESHKLYGHGNELFSLCCDHQ-GKLVASSCKAQSTAAAEIWLWEVGS---WKAMGRL-QSHSLTVTQIRFSHDDNLLLSVS 122 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~-~~~l~~~~~~~~~~d~~i~vw~~~~---~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~ 122 (298)
..+.+.+|++.|..++|+|- |..||+++ .|+.|++|+... ..+...+ .+|+..|.+++|+|.|++|++++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg-----~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aS 80 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCG-----TDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASAS 80 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeec-----CCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEee
Confidence 46788999999999999997 88999994 599999999984 3344444 36999999999999999999999
Q ss_pred CCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEE
Q 037555 123 RDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTA 202 (298)
Q Consensus 123 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~ 202 (298)
.|.++.||.-.... .+.+..+.+|..+|.+++|+++|++||+++.|..|-+|.+...........+++|...|..
T Consensus 81 FD~t~~Iw~k~~~e-----fecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~ 155 (312)
T KOG0645|consen 81 FDATVVIWKKEDGE-----FECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKH 155 (312)
T ss_pred ccceEEEeecCCCc-----eeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccE
Confidence 99999999876443 7889999999999999999999999999999999999999977777777788899999999
Q ss_pred EEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEE
Q 037555 203 LSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQL 282 (298)
Q Consensus 203 ~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 282 (298)
+.|+|.. .+|++++.|.+|++|+-... ..+.+... +.+|...|.+++|++.| ..|
T Consensus 156 V~WHPt~-----dlL~S~SYDnTIk~~~~~~d----------ddW~c~~t---l~g~~~TVW~~~F~~~G-------~rl 210 (312)
T KOG0645|consen 156 VIWHPTE-----DLLFSCSYDNTIKVYRDEDD----------DDWECVQT---LDGHENTVWSLAFDNIG-------SRL 210 (312)
T ss_pred EEEcCCc-----ceeEEeccCCeEEEEeecCC----------CCeeEEEE---ecCccceEEEEEecCCC-------ceE
Confidence 9999988 79999999999999987632 23456666 45799999999999999 899
Q ss_pred EeeeCCCcEEEeEe
Q 037555 283 ASCGADNTVRVFQV 296 (298)
Q Consensus 283 ~s~~~d~~i~iw~~ 296 (298)
++|+.|++++||.+
T Consensus 211 ~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 211 VSCSDDGTVSIWRL 224 (312)
T ss_pred EEecCCcceEeeee
Confidence 99999999999974
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.5e-35 Score=215.57 Aligned_cols=213 Identities=16% Similarity=0.298 Sum_probs=191.1
Q ss_pred ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeE
Q 037555 48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF 127 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 127 (298)
..++|+||.+.|.++.|++|.+++++++ .||.+.|||.-+...++.+......|..++|+|.|++++.|+.|+..
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaS-----qDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~C 121 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSAS-----QDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKC 121 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeec-----cCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCcee
Confidence 4588999999999999999999999994 59999999999888888888888999999999999999999999999
Q ss_pred EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555 128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG 207 (298)
Q Consensus 128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (298)
.||++........ .+..+.+.+|.+.+.++.|-+ ...|++++.|.+..+||+++++... .+.+|.+.|.++.+.|
T Consensus 122 siy~ls~~d~~g~-~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~---~f~GH~gDV~slsl~p 196 (343)
T KOG0286|consen 122 SIYPLSTRDAEGN-VRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQ---VFHGHTGDVMSLSLSP 196 (343)
T ss_pred EEEeccccccccc-ceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEE---EecCCcccEEEEecCC
Confidence 9999986533222 456678899999999999987 5679999999999999999999888 8889999999999999
Q ss_pred ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC
Q 037555 208 LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA 287 (298)
Q Consensus 208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~ 287 (298)
... +.+++|+-|+..++||++.+ .+... +.+|...|++++|.|+| .-+++|+.
T Consensus 197 ~~~----ntFvSg~cD~~aklWD~R~~-------------~c~qt---F~ghesDINsv~ffP~G-------~afatGSD 249 (343)
T KOG0286|consen 197 SDG----NTFVSGGCDKSAKLWDVRSG-------------QCVQT---FEGHESDINSVRFFPSG-------DAFATGSD 249 (343)
T ss_pred CCC----CeEEecccccceeeeeccCc-------------ceeEe---ecccccccceEEEccCC-------CeeeecCC
Confidence 432 89999999999999999988 55555 55899999999999999 89999999
Q ss_pred CCcEEEeEec
Q 037555 288 DNTVRVFQVN 297 (298)
Q Consensus 288 d~~i~iw~~~ 297 (298)
|++.|+||++
T Consensus 250 D~tcRlyDlR 259 (343)
T KOG0286|consen 250 DATCRLYDLR 259 (343)
T ss_pred CceeEEEeec
Confidence 9999999986
No 16
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-35 Score=222.94 Aligned_cols=244 Identities=20% Similarity=0.361 Sum_probs=212.3
Q ss_pred cccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCce
Q 037555 15 DGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAA 83 (298)
Q Consensus 15 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~ 83 (298)
++.+.+.+|..+|..+.+.|.. -.++.+ +.|+ ....++||.+.|..++|+..|++||+++. |-
T Consensus 99 ~l~~~l~g~r~~vt~v~~hp~~-~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs-----Dl 172 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIFHPSE-ALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSS-----DL 172 (406)
T ss_pred CchhhhhccccceeeeeeccCc-eEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCC-----cc
Confidence 5677788899999999998543 333333 2332 46778999999999999999999999965 66
Q ss_pred EEEEEEcCC-ceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc
Q 037555 84 EIWLWEVGS-WKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP 162 (298)
Q Consensus 84 ~i~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 162 (298)
.+++||.++ .++++.+.+|...|.+++|-|.|.++++++.|.+|+.|++.+ +..+.++.+|...|..++.+.
T Consensus 173 ~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~t-------g~cv~t~~~h~ewvr~v~v~~ 245 (406)
T KOG0295|consen 173 SAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDT-------GYCVKTFPGHSEWVRMVRVNQ 245 (406)
T ss_pred chhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEeccc-------ceeEEeccCchHhEEEEEecC
Confidence 799999986 567778889999999999999999999999999999999998 778999999999999999999
Q ss_pred CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc----------cCCccEEEEeecCCcEEEEEee
Q 037555 163 FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR----------QKNHGFLAVGMESGVIELWSIS 232 (298)
Q Consensus 163 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------~~~~~~l~~g~~dg~i~vwd~~ 232 (298)
||..+++++.|.+|++|-+.++++.. .+..|+.+|.+++|.|... ..++.++.+++.|+.|++||+.
T Consensus 246 DGti~As~s~dqtl~vW~~~t~~~k~---~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~ 322 (406)
T KOG0295|consen 246 DGTIIASCSNDQTLRVWVVATKQCKA---ELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS 322 (406)
T ss_pred CeeEEEecCCCceEEEEEeccchhhh---hhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc
Confidence 99999999999999999999987766 6667999999999999764 1234699999999999999999
Q ss_pred ecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 233 VNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
++ .++.. +.+|...|..++|+|.| ++|+++..|+++++||++
T Consensus 323 tg-------------~cL~t---L~ghdnwVr~~af~p~G-------kyi~ScaDDktlrvwdl~ 364 (406)
T KOG0295|consen 323 TG-------------MCLFT---LVGHDNWVRGVAFSPGG-------KYILSCADDKTLRVWDLK 364 (406)
T ss_pred CC-------------eEEEE---EecccceeeeeEEcCCC-------eEEEEEecCCcEEEEEec
Confidence 88 66666 55899999999999999 899999999999999985
No 17
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2e-36 Score=231.85 Aligned_cols=230 Identities=21% Similarity=0.340 Sum_probs=197.8
Q ss_pred CCCceeeeccCCCccccccc------CCCCc-----eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC
Q 037555 24 PDAVPAVFTEPPIEDQLAWH------TLWPE-----SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS 92 (298)
Q Consensus 24 ~~~v~~~~~~~~~~~~~~~~------~~~~~-----~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~ 92 (298)
.-.|..+.+. |.+..+.++ +||.- -..++.|..+|+++.|++++..+++| +.+|.|++|+..
T Consensus 96 kc~V~~v~Wt-PeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSg-----D~gG~iKyWqpn- 168 (464)
T KOG0284|consen 96 KCPVNVVRWT-PEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISG-----DKGGMIKYWQPN- 168 (464)
T ss_pred ccceeeEEEc-CCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEc-----CCCceEEecccc-
Confidence 3456777777 666777666 57753 12346899999999999999999999 669999999987
Q ss_pred ceeeeccccc-cccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee
Q 037555 93 WKAMGRLQSH-SLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS 171 (298)
Q Consensus 93 ~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 171 (298)
...++.++.| ...|++++|+|+...|++++.||+|+|||... .+....+.+|.-.|.+++|+|...++++++
T Consensus 169 mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~-------~kee~vL~GHgwdVksvdWHP~kgLiasgs 241 (464)
T KOG0284|consen 169 MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM-------PKEERVLRGHGWDVKSVDWHPTKGLIASGS 241 (464)
T ss_pred hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC-------CchhheeccCCCCcceeccCCccceeEEcc
Confidence 4455566655 49999999999999999999999999999987 445566789999999999999999999999
Q ss_pred CCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceee
Q 037555 172 RDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIII 251 (298)
Q Consensus 172 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 251 (298)
.|..|++||.+++.++. ++..|+..|..+.|+|++ ++|++++.|..++++|+++.+
T Consensus 242 kDnlVKlWDprSg~cl~---tlh~HKntVl~~~f~~n~-----N~Llt~skD~~~kv~DiR~mk---------------- 297 (464)
T KOG0284|consen 242 KDNLVKLWDPRSGSCLA---TLHGHKNTVLAVKFNPNG-----NWLLTGSKDQSCKVFDIRTMK---------------- 297 (464)
T ss_pred CCceeEeecCCCcchhh---hhhhccceEEEEEEcCCC-----CeeEEccCCceEEEEehhHhH----------------
Confidence 99999999999999998 888999999999999998 899999999999999998542
Q ss_pred eeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 252 RFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 252 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.+..+++|...|+++.|+|-.. .+|.+++.||.|..|.+.
T Consensus 298 El~~~r~Hkkdv~~~~WhP~~~------~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 298 ELFTYRGHKKDVTSLTWHPLNE------SLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred HHHHhhcchhhheeeccccccc------cceeeccCCCceEEEecc
Confidence 2233778999999999999764 799999999999999864
No 18
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-34 Score=241.94 Aligned_cols=241 Identities=18% Similarity=0.278 Sum_probs=209.2
Q ss_pred ccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEE
Q 037555 18 DTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIW 86 (298)
Q Consensus 18 ~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~ 86 (298)
..++..+..|..+.|.|... .+.++ .+|+ .+..|..|.++|..++|+|++.++++| ++|..|+
T Consensus 3 tkfEskSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSG-----GDDykIk 76 (1202)
T KOG0292|consen 3 TKFESKSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSG-----GDDYKIK 76 (1202)
T ss_pred chhhcccccccceecCCCCC-EEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEec-----CCccEEE
Confidence 45667778889999995543 44333 6776 578889999999999999999999999 5699999
Q ss_pred EEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCE
Q 037555 87 LWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHE 166 (298)
Q Consensus 87 vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 166 (298)
||+..+.+++.++.+|-..|..+.|++.-.+|+++|.|-+|+||+.++ .+++..+.+|...|.|..|+|....
T Consensus 77 VWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqs-------r~~iavltGHnHYVMcAqFhptEDl 149 (1202)
T KOG0292|consen 77 VWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQS-------RKCIAVLTGHNHYVMCAQFHPTEDL 149 (1202)
T ss_pred EEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccC-------CceEEEEecCceEEEeeccCCccce
Confidence 999999999999999999999999999999999999999999999998 7789999999999999999999999
Q ss_pred EEEeeCCCeEEEEEccCCcce--------------------------eeeeecCCCCCceEEEEEeeccccCCccEEEEe
Q 037555 167 FATGSRDKTVKIWAVENKSSV--------------------------KQILALPPFNSSVTALSWVGLDRQKNHGFLAVG 220 (298)
Q Consensus 167 l~~~~~dg~i~~wd~~~~~~~--------------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g 220 (298)
++++|-|.+||+||+...+.. .....+.+|...|+-++|+|.- .+|++|
T Consensus 150 IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-----pliVSG 224 (1202)
T KOG0292|consen 150 IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-----PLIVSG 224 (1202)
T ss_pred EEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc-----ceEEec
Confidence 999999999999999742110 0112456899999999999998 699999
Q ss_pred ecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 221 MESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 221 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
++|..|++|.+... ....+....+|...|.++-|+|.. .++++.|+|++|++||++
T Consensus 225 ~DDRqVKlWrmnet--------------KaWEvDtcrgH~nnVssvlfhp~q-------~lIlSnsEDksirVwDm~ 280 (1202)
T KOG0292|consen 225 ADDRQVKLWRMNET--------------KAWEVDTCRGHYNNVSSVLFHPHQ-------DLILSNSEDKSIRVWDMT 280 (1202)
T ss_pred CCcceeeEEEeccc--------------cceeehhhhcccCCcceEEecCcc-------ceeEecCCCccEEEEecc
Confidence 99999999998764 334455578999999999999998 899999999999999985
No 19
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.6e-34 Score=236.77 Aligned_cols=241 Identities=19% Similarity=0.258 Sum_probs=202.6
Q ss_pred eeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEec
Q 037555 8 TVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCK 76 (298)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~ 76 (298)
..+..++.....+-||.++|....|. |....+.+. ++|. .+-.++||..||.++.|+|.|-++|+++
T Consensus 435 ~~D~~~~~~~~~L~GH~GPVyg~sFs-Pd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas- 512 (707)
T KOG0263|consen 435 MLDDDSSGTSRTLYGHSGPVYGCSFS-PDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATAS- 512 (707)
T ss_pred hccccCCceeEEeecCCCceeeeeec-ccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecC-
Confidence 34455566667799999999999999 555666555 5664 5777889999999999999999999995
Q ss_pred cCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceE
Q 037555 77 AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIW 156 (298)
Q Consensus 77 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 156 (298)
.|++-++|......+++.+.+|-+.|.|+.|+|+.+++++||.|.++++||+.+ +..++.+.+|.++|.
T Consensus 513 ----~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~-------G~~VRiF~GH~~~V~ 581 (707)
T KOG0263|consen 513 ----HDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVST-------GNSVRIFTGHKGPVT 581 (707)
T ss_pred ----CCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCC-------CcEEEEecCCCCceE
Confidence 599999999999999999999999999999999999999999999999999998 667889999999999
Q ss_pred EEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccc
Q 037555 157 SCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRT 236 (298)
Q Consensus 157 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~ 236 (298)
+++|+|+|++|++|+.||.|++||+.+++.+. .+.+|.+.|.++.|+.++ .+|++|+.|.+|++||+.....
T Consensus 582 al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~---~l~~Ht~ti~SlsFS~dg-----~vLasgg~DnsV~lWD~~~~~~ 653 (707)
T KOG0263|consen 582 ALAFSPCGRYLASGDEDGLIKIWDLANGSLVK---QLKGHTGTIYSLSFSRDG-----NVLASGGADNSVRLWDLTKVIE 653 (707)
T ss_pred EEEEcCCCceEeecccCCcEEEEEcCCCcchh---hhhcccCceeEEEEecCC-----CEEEecCCCCeEEEEEchhhcc
Confidence 99999999999999999999999999998888 777899999999999999 8999999999999999976543
Q ss_pred cccc-----------CCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555 237 NDVS-----------TPAPSTANIIIRFDPFACHVAAVNRMAWKTHE 272 (298)
Q Consensus 237 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 272 (298)
.... .....+.-.+..+ ..-..+|..+.|...+
T Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~llgs~---~tK~tpv~~l~FtrrN 697 (707)
T KOG0263|consen 654 LLNLGHISTSNSAITQENNASSLLLGSF---YTKNTPVVGLHFTRRN 697 (707)
T ss_pred cccccccccccccccccCCCCcceeeee---eecCceEEEEEEeccc
Confidence 3000 0001111223333 3356789999998876
No 20
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-33 Score=222.35 Aligned_cols=258 Identities=17% Similarity=0.295 Sum_probs=211.3
Q ss_pred eeeeecCcccccccCCCCCceeeeccCCCcccccccC-----------CCCceEEeccCCCceEEEEEcCCCCEEEeEec
Q 037555 8 TVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHT-----------LWPESHKLYGHGNELFSLCCDHQGKLVASSCK 76 (298)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~ 76 (298)
.|--++|+.+..+.||...|..+.|.|...-++++.. -++...+++.|..-|.|+.|+|||.++|+++
T Consensus 131 ~F~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~g- 209 (603)
T KOG0318|consen 131 VFLWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAG- 209 (603)
T ss_pred EEEecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEec-
Confidence 4557889999999999999999999988877777762 2233556678999999999999999999995
Q ss_pred cCCCCceEEEEEEcCCceeeeccc---cccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc-------------
Q 037555 77 AQSTAAAEIWLWEVGSWKAMGRLQ---SHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI------------- 140 (298)
Q Consensus 77 ~~~~~d~~i~vw~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~------------- 140 (298)
.||+|.+||-.+++.+..+. +|.+.|.++.|+||+..+++++.|.+++|||+.+.+....
T Consensus 210 ----sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG 285 (603)
T KOG0318|consen 210 ----SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVG 285 (603)
T ss_pred ----CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEE
Confidence 59999999999999998887 8999999999999999999999999999999986541110
Q ss_pred -----------------------ceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCccee---------
Q 037555 141 -----------------------DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVK--------- 188 (298)
Q Consensus 141 -----------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~--------- 188 (298)
...+++.+.+|...|+++..+|++.+|++|+.||.|.-||...+..-.
T Consensus 286 ~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nq 365 (603)
T KOG0318|consen 286 CLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQ 365 (603)
T ss_pred EEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccce
Confidence 223456667899999999999999999999999999999987522110
Q ss_pred --------------------------------------------------------------------------------
Q 037555 189 -------------------------------------------------------------------------------- 188 (298)
Q Consensus 189 -------------------------------------------------------------------------------- 188 (298)
T Consensus 366 I~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~ 445 (603)
T KOG0318|consen 366 IKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYE 445 (603)
T ss_pred EEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccc
Confidence
Q ss_pred ---------------------------------eeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecc
Q 037555 189 ---------------------------------QILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNR 235 (298)
Q Consensus 189 ---------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 235 (298)
+......|.++|++++++|++ .+|++|...+.+.+||+.+.+
T Consensus 446 ~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~-----~yla~~Da~rkvv~yd~~s~~ 520 (603)
T KOG0318|consen 446 SSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDG-----AYLAAGDASRKVVLYDVASRE 520 (603)
T ss_pred cceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCC-----cEEEEeccCCcEEEEEcccCc
Confidence 011122466677888888887 899999999999999998763
Q ss_pred cccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 236 TNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
. ....+.-|...|++|+|+|+. .++|||+.|-.|.||+++
T Consensus 521 ~---------------~~~~w~FHtakI~~~aWsP~n-------~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 521 V---------------KTNRWAFHTAKINCVAWSPNN-------KLVATGSLDTNVIIYSVK 560 (603)
T ss_pred e---------------ecceeeeeeeeEEEEEeCCCc-------eEEEeccccceEEEEEcc
Confidence 2 111133499999999999999 899999999999999975
No 21
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.9e-34 Score=216.87 Aligned_cols=226 Identities=19% Similarity=0.327 Sum_probs=194.6
Q ss_pred CCCCceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC
Q 037555 44 TLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR 123 (298)
Q Consensus 44 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 123 (298)
.-|...+.+.+|.+.|.|+++.|....|++|+ .|++|+|||+.+++...++.+|...|..+++++-..++++++.
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs-----~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~ge 213 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGS-----ADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGE 213 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecC-----CCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecC
Confidence 34566788899999999999999999999994 5999999999999999999999999999999999999999999
Q ss_pred CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEE
Q 037555 124 DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTAL 203 (298)
Q Consensus 124 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~ 203 (298)
|+.|+.||+.. .+.++.+.+|-..|.+++.+|.-..|++|+.|.++++||+++...+. .+.+|..+|.++
T Consensus 214 dk~VKCwDLe~-------nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~---~l~GH~~~V~~V 283 (460)
T KOG0285|consen 214 DKQVKCWDLEY-------NKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVH---VLSGHTNPVASV 283 (460)
T ss_pred CCeeEEEechh-------hhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEE---EecCCCCcceeE
Confidence 99999999997 67788999999999999999999999999999999999999988877 888999999999
Q ss_pred EEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCC-----------------CCccee--------eeeccCCc
Q 037555 204 SWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAP-----------------STANII--------IRFDPFAC 258 (298)
Q Consensus 204 ~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-----------------~~~~~~--------~~~~~~~~ 258 (298)
.+.|.. ..+++|+.|++|++||++.++.....+-.. .....+ ..+..+.+
T Consensus 284 ~~~~~d-----pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsg 358 (460)
T KOG0285|consen 284 MCQPTD-----PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSG 358 (460)
T ss_pred EeecCC-----CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhcccc
Confidence 999988 579999999999999999875432211110 000111 11223567
Q ss_pred ccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 259 HVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 259 ~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
|...|++++.+.|+ ++++|+.+|.|.+||.+
T Consensus 359 h~~iintl~~nsD~--------v~~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 359 HNAIINTLSVNSDG--------VLVSGGDNGSIMFWDWK 389 (460)
T ss_pred ccceeeeeeeccCc--------eEEEcCCceEEEEEecC
Confidence 88899999998887 99999999999999964
No 22
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-34 Score=231.55 Aligned_cols=237 Identities=16% Similarity=0.260 Sum_probs=209.6
Q ss_pred cccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEE
Q 037555 19 TLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWL 87 (298)
Q Consensus 19 ~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~v 87 (298)
.+..+++.|.++.+.|. +..+..+ .+|+ +++.+.-..-||.+..|-+..+.+++| ++|..|+|
T Consensus 8 k~~~rSdRVKsVd~HPt-ePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~G-----sDD~~IrV 81 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPT-EPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTG-----SDDMQIRV 81 (794)
T ss_pred HhhccCCceeeeecCCC-CceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEe-----cCCceEEE
Confidence 45568888999998844 4443333 4564 577777788899999999999999999 56999999
Q ss_pred EEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc-CCCE
Q 037555 88 WEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-FGHE 166 (298)
Q Consensus 88 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 166 (298)
|+.++++.+..|..|...|.+++.+|...+++++|.|-+|++||.+.. +.+.+.+.+|...|.+++|+| |.+.
T Consensus 82 fnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~------wa~~qtfeGH~HyVMqv~fnPkD~nt 155 (794)
T KOG0276|consen 82 FNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE------WACEQTFEGHEHYVMQVAFNPKDPNT 155 (794)
T ss_pred EecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCc------eeeeeEEcCcceEEEEEEecCCCccc
Confidence 999999999999999999999999999999999999999999999874 888999999999999999999 6689
Q ss_pred EEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCC
Q 037555 167 FATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPST 246 (298)
Q Consensus 167 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 246 (298)
|++++-|++|++|.+.+..+.. ++.+|...|+++.+-+.+. ..+|++|++|..|+|||..+.
T Consensus 156 FaS~sLDrTVKVWslgs~~~nf---Tl~gHekGVN~Vdyy~~gd---kpylIsgaDD~tiKvWDyQtk------------ 217 (794)
T KOG0276|consen 156 FASASLDRTVKVWSLGSPHPNF---TLEGHEKGVNCVDYYTGGD---KPYLISGADDLTIKVWDYQTK------------ 217 (794)
T ss_pred eeeeeccccEEEEEcCCCCCce---eeeccccCcceEEeccCCC---cceEEecCCCceEEEeecchH------------
Confidence 9999999999999999888777 7889999999999998652 259999999999999999987
Q ss_pred cceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 247 ANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 247 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
.|+.. +.+|...|..+.|+|.- .+++||++||++|||+-
T Consensus 218 -~CV~T---LeGHt~Nvs~v~fhp~l-------piiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 218 -SCVQT---LEGHTNNVSFVFFHPEL-------PIIISGSEDGTVRIWNS 256 (794)
T ss_pred -HHHHH---hhcccccceEEEecCCC-------cEEEEecCCccEEEecC
Confidence 56555 66899999999999998 79999999999999974
No 23
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.6e-33 Score=232.53 Aligned_cols=237 Identities=22% Similarity=0.345 Sum_probs=195.3
Q ss_pred cccccCC-CCCceeeeccCCCccccccc------CCCC-------ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCc
Q 037555 17 LDTLESV-PDAVPAVFTEPPIEDQLAWH------TLWP-------ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAA 82 (298)
Q Consensus 17 ~~~~~~~-~~~v~~~~~~~~~~~~~~~~------~~~~-------~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d 82 (298)
...+..| ...|.++.|. +.+..++.. .+|. +.+.+.+|...|.+++|+|++++++++ +.|
T Consensus 151 ~~~~~~~~~~sv~~~~fs-~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~-----s~D 224 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFS-PDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSG-----SDD 224 (456)
T ss_pred eeeecccccCceEEEEEc-CCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEe-----cCC
Confidence 3344444 6778888888 445555554 2332 356668999999999999999999999 459
Q ss_pred eEEEEEEc-CCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEc
Q 037555 83 AEIWLWEV-GSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN 161 (298)
Q Consensus 83 ~~i~vw~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 161 (298)
++|+|||+ ..+..++++.+|...|++++|+|+++++++|+.|++|++||+++ ..+...+..|.+.|.+++|+
T Consensus 225 ~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~-------~~~~~~l~~hs~~is~~~f~ 297 (456)
T KOG0266|consen 225 KTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT-------GECVRKLKGHSDGISGLAFS 297 (456)
T ss_pred ceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC-------CeEEEeeeccCCceEEEEEC
Confidence 99999999 55588899999999999999999999999999999999999998 67899999999999999999
Q ss_pred cCCCEEEEeeCCCeEEEEEccCCcc--eeeeeecCCCCC--ceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccc
Q 037555 162 PFGHEFATGSRDKTVKIWAVENKSS--VKQILALPPFNS--SVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTN 237 (298)
Q Consensus 162 ~~~~~l~~~~~dg~i~~wd~~~~~~--~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~ 237 (298)
+++++|++++.|+.|++||+.++.. .. .+..+.. +++++.|+|++ .+++++..|+.+++||+....
T Consensus 298 ~d~~~l~s~s~d~~i~vwd~~~~~~~~~~---~~~~~~~~~~~~~~~fsp~~-----~~ll~~~~d~~~~~w~l~~~~-- 367 (456)
T KOG0266|consen 298 PDGNLLVSASYDGTIRVWDLETGSKLCLK---LLSGAENSAPVTSVQFSPNG-----KYLLSASLDRTLKLWDLRSGK-- 367 (456)
T ss_pred CCCCEEEEcCCCccEEEEECCCCceeeee---cccCCCCCCceeEEEECCCC-----cEEEEecCCCeEEEEEccCCc--
Confidence 9999999999999999999999883 34 3333333 59999999999 899999999999999999773
Q ss_pred cccCCCCCCcceeeeeccCCcccc---eEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 238 DVSTPAPSTANIIIRFDPFACHVA---AVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.... +.+|.. .+.+...++.+ .++++++.|+.|++|++.
T Consensus 368 -----------~~~~---~~~~~~~~~~~~~~~~~~~~-------~~i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 368 -----------SVGT---YTGHSNLVRCIFSPTLSTGG-------KLIYSGSEDGSVYVWDSS 409 (456)
T ss_pred -----------ceee---ecccCCcceeEecccccCCC-------CeEEEEeCCceEEEEeCC
Confidence 3333 233444 34445556667 899999999999999975
No 24
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=5.4e-35 Score=228.41 Aligned_cols=242 Identities=18% Similarity=0.328 Sum_probs=203.1
Q ss_pred CcccccccCCCCCceeeeccCCCccccccc------CCCC------ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCC
Q 037555 14 NDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP------ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTA 81 (298)
Q Consensus 14 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~------~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~ 81 (298)
.+.+.++.+|+..|.++.+.|-....++++ .+|. +++++.+|..+|.+++|+++|..+.+++.
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sf----- 278 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASF----- 278 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeec-----
Confidence 345788899999999999996566666665 4563 68899999999999999999999999965
Q ss_pred ceEEEEEEcCCceeeeccccccccEEEEEEcCCC-CEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEE
Q 037555 82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDD-NLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW 160 (298)
Q Consensus 82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 160 (298)
|+.|++||+++|+++..|. ....++|+.|+|++ +.+++|+.|+.|+.||++. .+.++.+..|-+.|..+.|
T Consensus 279 D~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs-------~kvvqeYd~hLg~i~~i~F 350 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS-------GKVVQEYDRHLGAILDITF 350 (503)
T ss_pred ceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccc-------hHHHHHHHhhhhheeeeEE
Confidence 9999999999999999887 45678999999988 8999999999999999998 6778888889999999999
Q ss_pred ccCCCEEEEeeCCCeEEEEEccCCcceeeee-------------------------------------------ecCCCC
Q 037555 161 NPFGHEFATGSRDKTVKIWAVENKSSVKQIL-------------------------------------------ALPPFN 197 (298)
Q Consensus 161 ~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-------------------------------------------~~~~~~ 197 (298)
-+++.++++.+.|+.+++|+.+....+..+. .+.+|.
T Consensus 351 ~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~ 430 (503)
T KOG0282|consen 351 VDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHS 430 (503)
T ss_pred ccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhccee
Confidence 9999999999999999999988644332110 111222
Q ss_pred --CceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCC
Q 037555 198 --SSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPK 275 (298)
Q Consensus 198 --~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 275 (298)
+.-..+.|+|++ .+|++|+.||.+.+||.++. +.+. .+.+|..++..+.|+|..+
T Consensus 431 vaGys~~v~fSpDG-----~~l~SGdsdG~v~~wdwkt~-------------kl~~---~lkah~~~ci~v~wHP~e~-- 487 (503)
T KOG0282|consen 431 VAGYSCQVDFSPDG-----RTLCSGDSDGKVNFWDWKTT-------------KLVS---KLKAHDQPCIGVDWHPVEP-- 487 (503)
T ss_pred ccCceeeEEEcCCC-----CeEEeecCCccEEEeechhh-------------hhhh---ccccCCcceEEEEecCCCc--
Confidence 223567788887 89999999999999999876 3333 3668999999999999886
Q ss_pred CCcceEEEeeeCCCcEEEeE
Q 037555 276 NSRTMQLASCGADNTVRVFQ 295 (298)
Q Consensus 276 ~~~~~~l~s~~~d~~i~iw~ 295 (298)
..+|||+.||.|++|+
T Consensus 488 ----Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 488 ----SKVATCGWDGLIKIWD 503 (503)
T ss_pred ----ceeEecccCceeEecC
Confidence 8999999999999996
No 25
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.9e-33 Score=201.10 Aligned_cols=212 Identities=17% Similarity=0.328 Sum_probs=182.5
Q ss_pred ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce--eeeccccccccEEEEEEcCCCCEEEEEeCCC
Q 037555 48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK--AMGRLQSHSLTVTQIRFSHDDNLLLSVSRDR 125 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 125 (298)
+.+++......|+.+...|+++.||+++ ...|++||+++++ ++.+|.+|...|+++.|..+|+.+++|+.||
T Consensus 32 C~rTiqh~dsqVNrLeiTpdk~~LAaa~------~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg 105 (311)
T KOG0315|consen 32 CSRTIQHPDSQVNRLEITPDKKDLAAAG------NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDG 105 (311)
T ss_pred EEEEEecCccceeeEEEcCCcchhhhcc------CCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCc
Confidence 5778877777899999999999999996 5789999998875 5788999999999999999999999999999
Q ss_pred eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEE
Q 037555 126 QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSW 205 (298)
Q Consensus 126 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~ 205 (298)
+++|||++.. . ......|..+|+++..+|+...|++|..+|.|++||+....+... -++.....|.++..
T Consensus 106 t~kIWdlR~~-------~-~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~--liPe~~~~i~sl~v 175 (311)
T KOG0315|consen 106 TVKIWDLRSL-------S-CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHE--LIPEDDTSIQSLTV 175 (311)
T ss_pred eEEEEeccCc-------c-cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccc--cCCCCCcceeeEEE
Confidence 9999999972 2 333445779999999999999999999999999999998765542 23445688999999
Q ss_pred eeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEee
Q 037555 206 VGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASC 285 (298)
Q Consensus 206 ~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~ 285 (298)
.|++ .+++.+...|..++|++.+.... ..+..+..++.|...+..+.+||++ .+|++|
T Consensus 176 ~~dg-----sml~a~nnkG~cyvW~l~~~~~~----------s~l~P~~k~~ah~~~il~C~lSPd~-------k~lat~ 233 (311)
T KOG0315|consen 176 MPDG-----SMLAAANNKGNCYVWRLLNHQTA----------SELEPVHKFQAHNGHILRCLLSPDV-------KYLATC 233 (311)
T ss_pred cCCC-----cEEEEecCCccEEEEEccCCCcc----------ccceEhhheecccceEEEEEECCCC-------cEEEee
Confidence 9999 79999999999999999874211 4455556678899999999999999 899999
Q ss_pred eCCCcEEEeEec
Q 037555 286 GADNTVRVFQVN 297 (298)
Q Consensus 286 ~~d~~i~iw~~~ 297 (298)
|.|.+++||+.+
T Consensus 234 ssdktv~iwn~~ 245 (311)
T KOG0315|consen 234 SSDKTVKIWNTD 245 (311)
T ss_pred cCCceEEEEecC
Confidence 999999999874
No 26
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.3e-33 Score=232.66 Aligned_cols=216 Identities=20% Similarity=0.381 Sum_probs=186.2
Q ss_pred CCCCceEEeccC-CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce--eeeccccccccEEEEEEcCCCCEEEE
Q 037555 44 TLWPESHKLYGH-GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK--AMGRLQSHSLTVTQIRFSHDDNLLLS 120 (298)
Q Consensus 44 ~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~ 120 (298)
..|.....+.+| ...|.++.|+++|+.+++++ .++.+++|+....+ ....+.+|...|.+++|+|+++++++
T Consensus 146 ~~~~~~~~~~~~~~~sv~~~~fs~~g~~l~~~~-----~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s 220 (456)
T KOG0266|consen 146 RVFSLEQTLAGHECPSVTCVDFSPDGRALAAAS-----SDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLS 220 (456)
T ss_pred ccceeeeeecccccCceEEEEEcCCCCeEEEcc-----CCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEE
Confidence 445555555555 78899999999999999994 59999999997777 66777889999999999999999999
Q ss_pred EeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCce
Q 037555 121 VSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSV 200 (298)
Q Consensus 121 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v 200 (298)
++.|++|++||+... ...++.+.+|...|++++|+|+++++++|+.|++|++||++++++.. .+.+|...|
T Consensus 221 ~s~D~tiriwd~~~~------~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~---~l~~hs~~i 291 (456)
T KOG0266|consen 221 GSDDKTLRIWDLKDD------GRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVR---KLKGHSDGI 291 (456)
T ss_pred ecCCceEEEeeccCC------CeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEE---eeeccCCce
Confidence 999999999999432 56789999999999999999999999999999999999999988877 788899999
Q ss_pred EEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcce
Q 037555 201 TALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTM 280 (298)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 280 (298)
++++|++++ .+|++++.|+.|++||+.++... +...+....... ++++++|+|++ .
T Consensus 292 s~~~f~~d~-----~~l~s~s~d~~i~vwd~~~~~~~-----------~~~~~~~~~~~~-~~~~~~fsp~~-------~ 347 (456)
T KOG0266|consen 292 SGLAFSPDG-----NLLVSASYDGTIRVWDLETGSKL-----------CLKLLSGAENSA-PVTSVQFSPNG-------K 347 (456)
T ss_pred EEEEECCCC-----CEEEEcCCCccEEEEECCCCcee-----------eeecccCCCCCC-ceeEEEECCCC-------c
Confidence 999999999 79999999999999999987310 233333222233 69999999999 8
Q ss_pred EEEeeeCCCcEEEeEec
Q 037555 281 QLASCGADNTVRVFQVN 297 (298)
Q Consensus 281 ~l~s~~~d~~i~iw~~~ 297 (298)
+|++++.|+.+++||++
T Consensus 348 ~ll~~~~d~~~~~w~l~ 364 (456)
T KOG0266|consen 348 YLLSASLDRTLKLWDLR 364 (456)
T ss_pred EEEEecCCCeEEEEEcc
Confidence 99999999999999986
No 27
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=5.1e-35 Score=220.43 Aligned_cols=222 Identities=18% Similarity=0.393 Sum_probs=190.0
Q ss_pred CCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcC
Q 037555 23 VPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVG 91 (298)
Q Consensus 23 ~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~ 91 (298)
-.+.|+++.+. .+.++++ ++|+ +.+.+.||++.|.|+.|. .+.+++|+ .|.+|+|||++
T Consensus 196 ~skgVYClQYD---D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGS-----SDsTvrvWDv~ 265 (499)
T KOG0281|consen 196 NSKGVYCLQYD---DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGS-----SDSTVRVWDVN 265 (499)
T ss_pred cCCceEEEEec---chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecC-----CCceEEEEecc
Confidence 34567887766 4444444 5775 478889999999999995 45888885 49999999999
Q ss_pred CceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee
Q 037555 92 SWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS 171 (298)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 171 (298)
+++++.++-.|...|..+.|+ +.++++++.|.++.+||+..+.. ..+...+.+|...|+.+.|+ .+++++++
T Consensus 266 tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~----it~rrVLvGHrAaVNvVdfd--~kyIVsAS 337 (499)
T KOG0281|consen 266 TGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTD----ITLRRVLVGHRAAVNVVDFD--DKYIVSAS 337 (499)
T ss_pred CCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchH----HHHHHHHhhhhhheeeeccc--cceEEEec
Confidence 999999999999999999996 45999999999999999987552 34456778999999999997 56999999
Q ss_pred CCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceee
Q 037555 172 RDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIII 251 (298)
Q Consensus 172 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 251 (298)
.|.+|++|++.+.+.+. ++.+|+..|.|+.+.. .++++|+.|.+|++||+..+ .++.
T Consensus 338 gDRTikvW~~st~efvR---tl~gHkRGIAClQYr~-------rlvVSGSSDntIRlwdi~~G-------------~cLR 394 (499)
T KOG0281|consen 338 GDRTIKVWSTSTCEFVR---TLNGHKRGIACLQYRD-------RLVVSGSSDNTIRLWDIECG-------------ACLR 394 (499)
T ss_pred CCceEEEEeccceeeeh---hhhcccccceehhccC-------eEEEecCCCceEEEEecccc-------------HHHH
Confidence 99999999999998888 8889999999988765 79999999999999999988 5544
Q ss_pred eeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 252 RFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 252 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
. +.+|+.-|.++.|.. ..+++|+.||+|++||+.
T Consensus 395 v---LeGHEeLvRciRFd~---------krIVSGaYDGkikvWdl~ 428 (499)
T KOG0281|consen 395 V---LEGHEELVRCIRFDN---------KRIVSGAYDGKIKVWDLQ 428 (499)
T ss_pred H---HhchHHhhhheeecC---------ceeeeccccceEEEEecc
Confidence 4 668999999999965 689999999999999985
No 28
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.7e-33 Score=217.04 Aligned_cols=228 Identities=21% Similarity=0.420 Sum_probs=195.4
Q ss_pred CCceeeeccCCCccccccc------CCCC----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC--
Q 037555 25 DAVPAVFTEPPIEDQLAWH------TLWP----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS-- 92 (298)
Q Consensus 25 ~~v~~~~~~~~~~~~~~~~------~~~~----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~-- 92 (298)
..|+++.++ ..+..++++ ++|. .+.+|..|+++|.++.|+.+|.+|++++. |+++.+||..+
T Consensus 236 kdVT~L~Wn-~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~v-----D~ttilwd~~~g~ 309 (524)
T KOG0273|consen 236 KDVTSLDWN-NDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGV-----DGTTILWDAHTGT 309 (524)
T ss_pred CCcceEEec-CCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccC-----CccEEEEeccCce
Confidence 457788887 566777776 5674 46778889999999999999999999955 77777777633
Q ss_pred ---------------------------------------ceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555 93 ---------------------------------------WKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQ 133 (298)
Q Consensus 93 ---------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 133 (298)
..++.++.+|.+.|.++.|+|.+.+|++++.|++++||...
T Consensus 310 ~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~ 389 (524)
T KOG0273|consen 310 VKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMG 389 (524)
T ss_pred EEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecC
Confidence 34556678899999999999999999999999999999987
Q ss_pred cCCCCccceeeeEEeeccCCceEEEEEccCC---------CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEE
Q 037555 134 RTGTGEIDYQLIARQEAHKRIIWSCSWNPFG---------HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALS 204 (298)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~ 204 (298)
. ......+..|...|..+.|+|.+ ..+++++.|++|++||+..+.++. .+..|+.+|.+++
T Consensus 390 ~-------~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~---~f~kH~~pVysva 459 (524)
T KOG0273|consen 390 Q-------SNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIH---TLMKHQEPVYSVA 459 (524)
T ss_pred C-------CcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeE---eeccCCCceEEEE
Confidence 6 45577788999999999999966 478999999999999999999888 7777999999999
Q ss_pred EeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEe
Q 037555 205 WVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLAS 284 (298)
Q Consensus 205 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s 284 (298)
|+|++ .++++|+.||.|.+|+.+++ +..+... ....|..++|+.++ .+|..
T Consensus 460 fS~~g-----~ylAsGs~dg~V~iws~~~~-------------~l~~s~~----~~~~Ifel~Wn~~G-------~kl~~ 510 (524)
T KOG0273|consen 460 FSPNG-----RYLASGSLDGCVHIWSTKTG-------------KLVKSYQ----GTGGIFELCWNAAG-------DKLGA 510 (524)
T ss_pred ecCCC-----cEEEecCCCCeeEeccccch-------------heeEeec----CCCeEEEEEEcCCC-------CEEEE
Confidence 99999 79999999999999999887 4444432 45679999999999 89999
Q ss_pred eeCCCcEEEeEec
Q 037555 285 CGADNTVRVFQVN 297 (298)
Q Consensus 285 ~~~d~~i~iw~~~ 297 (298)
+-.|+.+++-|++
T Consensus 511 ~~sd~~vcvldlr 523 (524)
T KOG0273|consen 511 CASDGSVCVLDLR 523 (524)
T ss_pred EecCCCceEEEec
Confidence 9999999999986
No 29
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-32 Score=225.81 Aligned_cols=250 Identities=19% Similarity=0.325 Sum_probs=210.3
Q ss_pred cccceeeeecCcccccccCCCCCceeeeccCCCccccccc--C-----CCC-----ceEEeccCCCceEEEEEcCCCCEE
Q 037555 4 ATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH--T-----LWP-----ESHKLYGHGNELFSLCCDHQGKLV 71 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~-----~~~-----~~~~~~~h~~~v~~~~~s~~~~~l 71 (298)
+....++-+.-+.++.+.-....+..+.++ ..++.++-+ + +|. -+....+|...+++++++|||+++
T Consensus 287 G~f~LyelP~f~lih~LSis~~~I~t~~~N-~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~i 365 (893)
T KOG0291|consen 287 GEFGLYELPDFNLIHSLSISDQKILTVSFN-STGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLI 365 (893)
T ss_pred CeeEEEecCCceEEEEeecccceeeEEEec-ccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEE
Confidence 344566677777777777777778777777 556666554 1 232 256667999999999999999999
Q ss_pred EeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc
Q 037555 72 ASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH 151 (298)
Q Consensus 72 ~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 151 (298)
|+| .+||.|+|||..++-+..+|..|+..|+.+.|+..++.+++++.||+|+.||+.. ++..+++...
T Consensus 366 aTG-----~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR-------YrNfRTft~P 433 (893)
T KOG0291|consen 366 ATG-----AEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR-------YRNFRTFTSP 433 (893)
T ss_pred Eec-----cCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc-------cceeeeecCC
Confidence 999 5699999999999999999999999999999999999999999999999999987 5666666543
Q ss_pred -CCceEEEEEccCCCEEEEeeCCC-eEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEE
Q 037555 152 -KRIIWSCSWNPFGHEFATGSRDK-TVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELW 229 (298)
Q Consensus 152 -~~~v~~~~~~~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vw 229 (298)
+....+++..|.|..+.+|+.|. .|.+|++++++.+- .+.+|.++|.+++|+|.+ ..|++++.|.+|++|
T Consensus 434 ~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllD---iLsGHEgPVs~l~f~~~~-----~~LaS~SWDkTVRiW 505 (893)
T KOG0291|consen 434 EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLD---ILSGHEGPVSGLSFSPDG-----SLLASGSWDKTVRIW 505 (893)
T ss_pred CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeee---hhcCCCCcceeeEEcccc-----CeEEeccccceEEEE
Confidence 34567899999999999999876 49999999999887 888999999999999999 799999999999999
Q ss_pred EeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 230 SISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
|+-... .....+. +...+..++|+|+| ..|+++..||.|.+||..
T Consensus 506 ~if~s~------------~~vEtl~----i~sdvl~vsfrPdG-------~elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 506 DIFSSS------------GTVETLE----IRSDVLAVSFRPDG-------KELAVATLDGQITFFDIK 550 (893)
T ss_pred EeeccC------------ceeeeEe----eccceeEEEEcCCC-------CeEEEEEecceEEEEEhh
Confidence 997642 2333332 67789999999999 899999999999999974
No 30
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=1.7e-32 Score=207.58 Aligned_cols=242 Identities=21% Similarity=0.353 Sum_probs=197.9
Q ss_pred CcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCc
Q 037555 14 NDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAA 82 (298)
Q Consensus 14 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d 82 (298)
.+.+..|..|.+.|.++...| ....++++ .+|+ ....+.+|++.|+++.|+.+|.+||+| +.+
T Consensus 54 DdS~~tF~~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATG-----dms 127 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATG-----DMS 127 (399)
T ss_pred ccceeehhhcCCceEEEEeCC-CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEec-----CCC
Confidence 567889999999999999996 55566665 3563 578889999999999999999999999 569
Q ss_pred eEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc
Q 037555 83 AEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP 162 (298)
Q Consensus 83 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 162 (298)
|.|+||...++.....+...-..+.-+.|+|.+.+|++|+.||.+.+|.+.. ....+.+.+|..++++=.|.|
T Consensus 128 G~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~-------~~~~kv~~Gh~~~ct~G~f~p 200 (399)
T KOG0296|consen 128 GKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPS-------QALCKVMSGHNSPCTCGEFIP 200 (399)
T ss_pred ccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCC-------cceeeEecCCCCCcccccccC
Confidence 9999999999988877766677888999999999999999999999999987 456778889999999999999
Q ss_pred CCCEEEEeeCCCeEEEEEccCCcceeeee---------------------------------------------------
Q 037555 163 FGHEFATGSRDKTVKIWAVENKSSVKQIL--------------------------------------------------- 191 (298)
Q Consensus 163 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~--------------------------------------------------- 191 (298)
+|++++++..||+|++||++++.++..+.
T Consensus 201 dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~ 280 (399)
T KOG0296|consen 201 DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKP 280 (399)
T ss_pred CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccc
Confidence 99999999999999999999866544221
Q ss_pred -----------------------------------------ecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEE
Q 037555 192 -----------------------------------------ALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWS 230 (298)
Q Consensus 192 -----------------------------------------~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd 230 (298)
..-.|+.+|..+.|.+ . .+|++++.+|.|+.||
T Consensus 281 ~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t-----~~l~t~c~~g~v~~wD 354 (399)
T KOG0296|consen 281 SQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-T-----DYLLTACANGKVRQWD 354 (399)
T ss_pred cchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-c-----chheeeccCceEEeee
Confidence 1112333444444444 2 4666777777777777
Q ss_pred eeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 231 ISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.+++ ++... +.+|...|.+++.+|+. ++++|+|.|++.++|++.
T Consensus 355 aRtG-------------~l~~~---y~GH~~~Il~f~ls~~~-------~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 355 ARTG-------------QLKFT---YTGHQMGILDFALSPQK-------RLVVTVSDDNTALVFEVP 398 (399)
T ss_pred cccc-------------ceEEE---EecCchheeEEEEcCCC-------cEEEEecCCCeEEEEecC
Confidence 7766 44444 66899999999999999 899999999999999864
No 31
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.7e-33 Score=206.16 Aligned_cols=207 Identities=23% Similarity=0.339 Sum_probs=181.4
Q ss_pred CceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcC-CceeeeccccccccEEEEEEcCCCCEEEEEeCCC
Q 037555 47 PESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVG-SWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDR 125 (298)
Q Consensus 47 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 125 (298)
.++..+.+|++.|+.+.|+|+|.+||+|+ .|..|.+|++. ..+....+++|.+.|..+.|.+|++.+++++.|.
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG-----~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk 112 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGG-----SDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDK 112 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecC-----CcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCc
Confidence 35667789999999999999999999995 49999999964 3455567889999999999999999999999999
Q ss_pred eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCC-CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEE
Q 037555 126 QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG-HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALS 204 (298)
Q Consensus 126 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~ 204 (298)
+++.||.++ ++..+..+.|...|+.+.-+.-+ .++.+++.|+++++||+|+...++ +++ .+..++++.
T Consensus 113 ~v~~wD~~t-------G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~---t~~-~kyqltAv~ 181 (338)
T KOG0265|consen 113 TVRGWDAET-------GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIK---TFE-NKYQLTAVG 181 (338)
T ss_pred eEEEEeccc-------ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhh---ccc-cceeEEEEE
Confidence 999999998 67788899999999998854444 567888999999999999988776 543 577899999
Q ss_pred EeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEe
Q 037555 205 WVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLAS 284 (298)
Q Consensus 205 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s 284 (298)
|...+ ..+++|+-|+.|++||++.. ..... +.+|..+|+.|..+|++ .++.+
T Consensus 182 f~d~s-----~qv~sggIdn~ikvWd~r~~-------------d~~~~---lsGh~DtIt~lsls~~g-------s~lls 233 (338)
T KOG0265|consen 182 FKDTS-----DQVISGGIDNDIKVWDLRKN-------------DGLYT---LSGHADTITGLSLSRYG-------SFLLS 233 (338)
T ss_pred ecccc-----cceeeccccCceeeeccccC-------------cceEE---eecccCceeeEEeccCC-------Ccccc
Confidence 99988 68999999999999999876 44444 56899999999999999 89999
Q ss_pred eeCCCcEEEeEec
Q 037555 285 CGADNTVRVFQVN 297 (298)
Q Consensus 285 ~~~d~~i~iw~~~ 297 (298)
-+.|.++++||++
T Consensus 234 nsMd~tvrvwd~r 246 (338)
T KOG0265|consen 234 NSMDNTVRVWDVR 246 (338)
T ss_pred ccccceEEEEEec
Confidence 9999999999986
No 32
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.3e-33 Score=215.62 Aligned_cols=243 Identities=16% Similarity=0.250 Sum_probs=199.7
Q ss_pred cccccccCCCCCceeeeccCCCcccccccC------CCC--------ceEEeccCCCceEEEEEcCCCCEEEeEeccCCC
Q 037555 15 DGLDTLESVPDAVPAVFTEPPIEDQLAWHT------LWP--------ESHKLYGHGNELFSLCCDHQGKLVASSCKAQST 80 (298)
Q Consensus 15 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------~~~--------~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~ 80 (298)
+..+.+..|.+.|.-+.|+ +.++.++++. +|. ..+++.+|..+|.-+.||||.++|++++.
T Consensus 215 qt~qil~~htdEVWfl~FS-~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~---- 289 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFS-HNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGF---- 289 (519)
T ss_pred hhhhhHhhCCCcEEEEEEc-CCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCc----
Confidence 3467789999999999999 7888998873 442 36888999999999999999999999954
Q ss_pred CceEEEEEEcCCceeeeccc-cccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccC-CceEEE
Q 037555 81 AAAEIWLWEVGSWKAMGRLQ-SHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHK-RIIWSC 158 (298)
Q Consensus 81 ~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~v~~~ 158 (298)
+..+.+||+.+|+....+. ++...+.+++|.|||..+++|+.|+.+..||++. ......++.. ..|.++
T Consensus 290 -~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg--------n~~~~W~gvr~~~v~dl 360 (519)
T KOG0293|consen 290 -DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG--------NILGNWEGVRDPKVHDL 360 (519)
T ss_pred -hHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc--------chhhcccccccceeEEE
Confidence 6779999999999887765 4568899999999999999999999999999984 3333333332 568999
Q ss_pred EEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc----------------------------
Q 037555 159 SWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR---------------------------- 210 (298)
Q Consensus 159 ~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------------------------- 210 (298)
+..+||.++++.+.|..|++++..+..... .+ ....+|++++.+.++.
T Consensus 361 ait~Dgk~vl~v~~d~~i~l~~~e~~~dr~---li-se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Gh 436 (519)
T KOG0293|consen 361 AITYDGKYVLLVTVDKKIRLYNREARVDRG---LI-SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGH 436 (519)
T ss_pred EEcCCCcEEEEEecccceeeechhhhhhhc---cc-cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcc
Confidence 999999999999999999999988765543 12 2456677777777665
Q ss_pred ------------cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCc
Q 037555 211 ------------QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSR 278 (298)
Q Consensus 211 ------------~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 278 (298)
..+..++++|++|+.|+||+..++ +++.. +.||...|++++|+|..+
T Consensus 437 kq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg-------------kll~~---LsGHs~~vNcVswNP~~p----- 495 (519)
T KOG0293|consen 437 KQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG-------------KLLAV---LSGHSKTVNCVSWNPADP----- 495 (519)
T ss_pred cccceEEEeccCCCCcceEEecCCCceEEEEEccCC-------------ceeEe---ecCCcceeeEEecCCCCH-----
Confidence 233479999999999999999887 55544 668999999999999876
Q ss_pred ceEEEeeeCCCcEEEeEec
Q 037555 279 TMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 279 ~~~l~s~~~d~~i~iw~~~ 297 (298)
.++|++|.||+||||...
T Consensus 496 -~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 496 -EMFASASDDGTIRIWGPS 513 (519)
T ss_pred -HHhhccCCCCeEEEecCC
Confidence 899999999999999753
No 33
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=5.3e-34 Score=205.79 Aligned_cols=243 Identities=21% Similarity=0.271 Sum_probs=196.4
Q ss_pred cccccCCCCCceeeeccC--CCcccccccC-----------CCCceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCce
Q 037555 17 LDTLESVPDAVPAVFTEP--PIEDQLAWHT-----------LWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAA 83 (298)
Q Consensus 17 ~~~~~~~~~~v~~~~~~~--~~~~~~~~~~-----------~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~ 83 (298)
.++-.+|.-+|..++|+| |.+-+++++. .-+=+.+|.||++.|.....+.+-...|++ ..|-
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasa-----aadf 81 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASA-----AADF 81 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhh-----cccc
Confidence 345679999999999986 4555666552 113378999999999999999988888888 4589
Q ss_pred EEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC
Q 037555 84 EIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF 163 (298)
Q Consensus 84 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 163 (298)
+-+|||.-+|..+.+|. |..-|.+++|+.|.++|++|+.+..+++||++.+. .+...+.+|.+.|..+.|...
T Consensus 82 takvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~------App~E~~ghtg~Ir~v~wc~e 154 (334)
T KOG0278|consen 82 TAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK------APPKEISGHTGGIRTVLWCHE 154 (334)
T ss_pred hhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCC------CCchhhcCCCCcceeEEEecc
Confidence 99999999999999998 89999999999999999999999999999998763 345677899999999999998
Q ss_pred CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc---------------------------------
Q 037555 164 GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR--------------------------------- 210 (298)
Q Consensus 164 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------------------------- 210 (298)
.+.|++.+.|++||+||.+++...+ .+. .+.+|+++.+++++.
T Consensus 155 D~~iLSSadd~tVRLWD~rTgt~v~---sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~SA 230 (334)
T KOG0278|consen 155 DKCILSSADDKTVRLWDHRTGTEVQ---SLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVESA 230 (334)
T ss_pred CceEEeeccCCceEEEEeccCcEEE---EEe-cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccccc
Confidence 9999999999999999999998877 333 566777888777774
Q ss_pred --cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCC
Q 037555 211 --QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD 288 (298)
Q Consensus 211 --~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d 288 (298)
.|+..++++|++|..++.||+.+++ .+..+ ..+|.++|.++.|+|+| ...++|++|
T Consensus 231 SL~P~k~~fVaGged~~~~kfDy~Tge-------------Ei~~~--nkgh~gpVhcVrFSPdG-------E~yAsGSED 288 (334)
T KOG0278|consen 231 SLHPKKEFFVAGGEDFKVYKFDYNTGE-------------EIGSY--NKGHFGPVHCVRFSPDG-------ELYASGSED 288 (334)
T ss_pred cccCCCceEEecCcceEEEEEeccCCc-------------eeeec--ccCCCCceEEEEECCCC-------ceeeccCCC
Confidence 2233455555555555555555542 11111 36899999999999999 899999999
Q ss_pred CcEEEeEec
Q 037555 289 NTVRVFQVN 297 (298)
Q Consensus 289 ~~i~iw~~~ 297 (298)
|+|++|...
T Consensus 289 GTirlWQt~ 297 (334)
T KOG0278|consen 289 GTIRLWQTT 297 (334)
T ss_pred ceEEEEEec
Confidence 999999864
No 34
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.1e-32 Score=206.91 Aligned_cols=250 Identities=18% Similarity=0.270 Sum_probs=206.7
Q ss_pred cccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCce
Q 037555 15 DGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAA 83 (298)
Q Consensus 15 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~ 83 (298)
+...++.+|-+-|.++++. |..+.++++ ++|+ ...++.||...|..+++|+...+|+++ ++|+
T Consensus 142 Kl~rVi~gHlgWVr~vavd-P~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~-----gedk 215 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVD-PGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSA-----GEDK 215 (460)
T ss_pred eehhhhhhccceEEEEeeC-CCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEe-----cCCC
Confidence 4567889999999999999 456677776 4775 357788999999999999999999999 5699
Q ss_pred EEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC
Q 037555 84 EIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF 163 (298)
Q Consensus 84 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 163 (298)
.|+.||++..+.++.+.+|-+.|.+++.+|.-..|++|+.|.++++||+++ ...+..+.+|..+|..+.+.|-
T Consensus 216 ~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt-------r~~V~~l~GH~~~V~~V~~~~~ 288 (460)
T KOG0285|consen 216 QVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT-------RASVHVLSGHTNPVASVMCQPT 288 (460)
T ss_pred eeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecc-------cceEEEecCCCCcceeEEeecC
Confidence 999999999999999999999999999999999999999999999999998 5668899999999999999998
Q ss_pred CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc---------------------------------
Q 037555 164 GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR--------------------------------- 210 (298)
Q Consensus 164 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------------------------- 210 (298)
...+++|+.|++|++||++.++... .+..|+..+.+++.+|...
T Consensus 289 dpqvit~S~D~tvrlWDl~agkt~~---tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nlsgh~~iint 365 (460)
T KOG0285|consen 289 DPQVITGSHDSTVRLWDLRAGKTMI---TLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNLSGHNAIINT 365 (460)
T ss_pred CCceEEecCCceEEEeeeccCceeE---eeecccceeeEEecCCchhhhhccCCccceeccCCccchhhccccccceeee
Confidence 8899999999999999999987766 5555677777777776443
Q ss_pred --cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeecc-CCcccceEEEEEeecCCCCCCCcceEEEeeeC
Q 037555 211 --QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDP-FACHVAAVNRMAWKTHEKPKNSRTMQLASCGA 287 (298)
Q Consensus 211 --~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~ 287 (298)
.....++++|++.|.+.+||.+++..-+..+ ..+.+ .......|.+.+|...+ ..|+||..
T Consensus 366 l~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~---------t~vqpGSl~sEagI~as~fDktg-------~rlit~ea 429 (460)
T KOG0285|consen 366 LSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQ---------TIVQPGSLESEAGIFASCFDKTG-------SRLITGEA 429 (460)
T ss_pred eeeccCceEEEcCCceEEEEEecCcCccccccc---------ccccCCccccccceeEEeecccC-------ceEEeccC
Confidence 1112588899999999999998874322100 00000 01135678999999988 89999999
Q ss_pred CCcEEEeEe
Q 037555 288 DNTVRVFQV 296 (298)
Q Consensus 288 d~~i~iw~~ 296 (298)
|.+|++|.-
T Consensus 430 dKtIk~~ke 438 (460)
T KOG0285|consen 430 DKTIKMYKE 438 (460)
T ss_pred CcceEEEec
Confidence 999999963
No 35
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.8e-32 Score=224.43 Aligned_cols=250 Identities=22% Similarity=0.338 Sum_probs=198.1
Q ss_pred eeeeecCcccccccCCCCCceeeeccCCCcccccccCCCCc----------eEEeccCCCceEEEEEcCCCCEEEeEecc
Q 037555 8 TVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHTLWPE----------SHKLYGHGNELFSLCCDHQGKLVASSCKA 77 (298)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----------~~~~~~h~~~v~~~~~s~~~~~l~~~~~~ 77 (298)
.++.++......+.|..+.|..+.|-.|.+.+++.++.-++ .+.+.||++.|.++....+|-+|++|++|
T Consensus 307 l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD 386 (775)
T KOG0319|consen 307 LYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKD 386 (775)
T ss_pred EEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCC
Confidence 34555666666666666666666666666666555532222 22344555556555544445555555543
Q ss_pred CC------------------------------------------CCceEEEEEEcCCcee-----ee----ccccccccE
Q 037555 78 QS------------------------------------------TAAAEIWLWEVGSWKA-----MG----RLQSHSLTV 106 (298)
Q Consensus 78 ~~------------------------------------------~~d~~i~vw~~~~~~~-----~~----~~~~~~~~v 106 (298)
.+ +.|.+|++|++...+. .. +...|...|
T Consensus 387 ~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdI 466 (775)
T KOG0319|consen 387 KSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDI 466 (775)
T ss_pred ceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccc
Confidence 31 4577888888764211 11 234699999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcc
Q 037555 107 TQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSS 186 (298)
Q Consensus 107 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 186 (298)
++++++|+.+++++||.|.+.++|+++. ......+.+|...|+++.|+|..+.++++|.|++|+||.+.+..+
T Consensus 467 N~Vaia~ndkLiAT~SqDktaKiW~le~-------~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSC 539 (775)
T KOG0319|consen 467 NCVAIAPNDKLIATGSQDKTAKIWDLEQ-------LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSC 539 (775)
T ss_pred cceEecCCCceEEecccccceeeecccC-------ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecccee
Confidence 9999999999999999999999999996 778999999999999999999999999999999999999999999
Q ss_pred eeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEE
Q 037555 187 VKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRM 266 (298)
Q Consensus 187 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 266 (298)
++ ++.+|...|..+.|-..+ ..|++++.||-|++|++.+. .|... +..|...|+++
T Consensus 540 lk---T~eGH~~aVlra~F~~~~-----~qliS~~adGliKlWnikt~-------------eC~~t---lD~H~DrvWaL 595 (775)
T KOG0319|consen 540 LK---TFEGHTSAVLRASFIRNG-----KQLISAGADGLIKLWNIKTN-------------ECEMT---LDAHNDRVWAL 595 (775)
T ss_pred ee---eecCccceeEeeeeeeCC-----cEEEeccCCCcEEEEeccch-------------hhhhh---hhhccceeEEE
Confidence 88 899999999999999998 79999999999999999998 66665 45799999999
Q ss_pred EeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555 267 AWKTHEKPKNSRTMQLASCGADNTVRVFQ 295 (298)
Q Consensus 267 ~~~~~~~~~~~~~~~l~s~~~d~~i~iw~ 295 (298)
+.+|.. .+++||+.||.|.+|.
T Consensus 596 ~~~~~~-------~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 596 SVSPLL-------DMFVTGGGDGRIIFWK 617 (775)
T ss_pred eecCcc-------ceeEecCCCeEEEEee
Confidence 999999 8999999999999995
No 36
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=5e-32 Score=200.22 Aligned_cols=252 Identities=17% Similarity=0.267 Sum_probs=204.4
Q ss_pred ccccccCCCCCceeeeccCCCccccccc------CCCC------ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCce
Q 037555 16 GLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP------ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAA 83 (298)
Q Consensus 16 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~------~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~ 83 (298)
.+..+.+|++.|+...|.| .+..++++ -+|. ....+++|.+.|+.+.|.+++..+++++ .|.
T Consensus 39 p~m~l~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~g-----tDk 112 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCG-----TDK 112 (338)
T ss_pred hhhhcCCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEec-----CCc
Confidence 4566789999999999995 77777776 3675 3677889999999999999999999995 599
Q ss_pred EEEEEEcCCceeeeccccccccEEEEEEcCCC-CEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc
Q 037555 84 EIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDD-NLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP 162 (298)
Q Consensus 84 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 162 (298)
+|+.||+++|+.+..+++|..-|..+.-+.-| .++.+++.|+++++||++. ...++.+ ....+++++.|..
T Consensus 113 ~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~-------k~~~~t~-~~kyqltAv~f~d 184 (338)
T KOG0265|consen 113 TVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK-------KEAIKTF-ENKYQLTAVGFKD 184 (338)
T ss_pred eEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc-------cchhhcc-ccceeEEEEEecc
Confidence 99999999999999999999999999854444 4677889999999999997 3334443 2467899999999
Q ss_pred CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccc---
Q 037555 163 FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDV--- 239 (298)
Q Consensus 163 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~--- 239 (298)
++..+.+|+-|+.|++||++...... .+.+|..+|+.+..+|.+ .++++-+.|..+++||++.......
T Consensus 185 ~s~qv~sggIdn~ikvWd~r~~d~~~---~lsGh~DtIt~lsls~~g-----s~llsnsMd~tvrvwd~rp~~p~~R~v~ 256 (338)
T KOG0265|consen 185 TSDQVISGGIDNDIKVWDLRKNDGLY---TLSGHADTITGLSLSRYG-----SFLLSNSMDNTVRVWDVRPFAPSQRCVK 256 (338)
T ss_pred cccceeeccccCceeeeccccCcceE---EeecccCceeeEEeccCC-----CccccccccceEEEEEecccCCCCceEE
Confidence 99999999999999999999988877 788999999999999999 7888888899999999875322111
Q ss_pred -cCCCC----------------------C--------CcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCC
Q 037555 240 -STPAP----------------------S--------TANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD 288 (298)
Q Consensus 240 -~~~~~----------------------~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d 288 (298)
..... . .......+..+.+|.+.|+.++|+|.. .+|.+|+.|
T Consensus 257 if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e-------~iils~~sd 329 (338)
T KOG0265|consen 257 IFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTE-------PIILSCSSD 329 (338)
T ss_pred EeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCC-------cEEEEeccC
Confidence 00000 0 001112234478999999999999999 899999999
Q ss_pred CcEEEeEe
Q 037555 289 NTVRVFQV 296 (298)
Q Consensus 289 ~~i~iw~~ 296 (298)
.+|.+=++
T Consensus 330 k~i~lgei 337 (338)
T KOG0265|consen 330 KTIYLGEI 337 (338)
T ss_pred ceeEeecc
Confidence 99987544
No 37
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.6e-32 Score=194.67 Aligned_cols=237 Identities=18% Similarity=0.255 Sum_probs=201.7
Q ss_pred cccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCce
Q 037555 15 DGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAA 83 (298)
Q Consensus 15 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~ 83 (298)
+.+..+..+.++|..+.|+ -.+....+. ++|. .++++.+|..+|..++.+.|...|++| +.|.
T Consensus 8 kr~~~l~~~qgaV~avryN-~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~-----GgDk 81 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYN-VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASC-----GGDK 81 (307)
T ss_pred hhceeecccccceEEEEEc-cCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccC-----CCCc
Confidence 3467788999999999998 555554443 6886 478999999999999999999999999 4599
Q ss_pred EEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC
Q 037555 84 EIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF 163 (298)
Q Consensus 84 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 163 (298)
.+.+||+.+|+.++.+.+|.+.|+.++|+.+...+++|+.|..+++||.+... .++++.+......|.++...
T Consensus 82 ~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s-----~ePiQildea~D~V~Si~v~-- 154 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRS-----FEPIQILDEAKDGVSSIDVA-- 154 (307)
T ss_pred eEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCC-----CCccchhhhhcCceeEEEec--
Confidence 99999999999999999999999999999999999999999999999998765 56788888888899999887
Q ss_pred CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCC
Q 037555 164 GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPA 243 (298)
Q Consensus 164 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 243 (298)
+..|++|+.||++|.||++.++... .. ...+|+++.|++++ +..+.++.|+.|++.|-.++
T Consensus 155 ~heIvaGS~DGtvRtydiR~G~l~s---Dy--~g~pit~vs~s~d~-----nc~La~~l~stlrLlDk~tG--------- 215 (307)
T KOG0316|consen 155 EHEIVAGSVDGTVRTYDIRKGTLSS---DY--FGHPITSVSFSKDG-----NCSLASSLDSTLRLLDKETG--------- 215 (307)
T ss_pred ccEEEeeccCCcEEEEEeecceeeh---hh--cCCcceeEEecCCC-----CEEEEeeccceeeecccchh---------
Confidence 6789999999999999999987654 32 46789999999999 89999999999999999988
Q ss_pred CCCcceeeeeccCCcccceE--EEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 244 PSTANIIIRFDPFACHVAAV--NRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+.+.. +.+|...= ...+++... ..+++|++||.|.+|||-
T Consensus 216 ----klL~s---YkGhkn~eykldc~l~qsd-------thV~sgSEDG~Vy~wdLv 257 (307)
T KOG0316|consen 216 ----KLLKS---YKGHKNMEYKLDCCLNQSD-------THVFSGSEDGKVYFWDLV 257 (307)
T ss_pred ----HHHHH---hcccccceeeeeeeecccc-------eeEEeccCCceEEEEEec
Confidence 33333 55675543 345566555 799999999999999973
No 38
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.8e-33 Score=200.73 Aligned_cols=249 Identities=22% Similarity=0.349 Sum_probs=202.1
Q ss_pred eeeeecCccccccc--CCCCCceeeeccCCCccccccc------CCCC------ceEEeccCCCceEEEEEcC-CCCEEE
Q 037555 8 TVERHGNDGLDTLE--SVPDAVPAVFTEPPIEDQLAWH------TLWP------ESHKLYGHGNELFSLCCDH-QGKLVA 72 (298)
Q Consensus 8 ~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~------~~~~------~~~~~~~h~~~v~~~~~s~-~~~~l~ 72 (298)
.+|...++.+..+. .-.+.+..+++++..+.+++++ ++|+ +++.++.|..+|.++.|++ ....++
T Consensus 42 ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~l 121 (311)
T KOG0277|consen 42 ILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFL 121 (311)
T ss_pred EEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEE
Confidence 33443444444443 2346678888886666665554 4663 5778899999999999998 455677
Q ss_pred eEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc
Q 037555 73 SSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH 151 (298)
Q Consensus 73 ~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 151 (298)
+++. |++|++|+....+.+.++.+|...|...+|+| ..+++++++.|+++++||++.+. +.+. +..|
T Consensus 122 tsSW-----D~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g------k~~~-i~ah 189 (311)
T KOG0277|consen 122 TSSW-----DGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG------KFMS-IEAH 189 (311)
T ss_pred eecc-----CCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC------ceeE-EEec
Confidence 7765 99999999999999999999999999999999 67899999999999999998753 3333 7789
Q ss_pred CCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEE
Q 037555 152 KRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWS 230 (298)
Q Consensus 152 ~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd 230 (298)
..+|.++.|+. +.+.+++|+.|+.|+.||++..+.. +..+.+|.-.|+.+.|+|... .+|++++.|=+++|||
T Consensus 190 ~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p--l~eL~gh~~AVRkvk~Sph~~----~lLaSasYDmT~riw~ 263 (311)
T KOG0277|consen 190 NSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP--LFELNGHGLAVRKVKFSPHHA----SLLASASYDMTVRIWD 263 (311)
T ss_pred cceeEeecccccCCcEEEecCCCceEEEEehhhcccc--ceeecCCceEEEEEecCcchh----hHhhhccccceEEecc
Confidence 99999999998 6789999999999999999987643 336678999999999999875 7999999999999999
Q ss_pred eeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555 231 ISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ 295 (298)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~ 295 (298)
...+. .++.. ...|..-|..+.|++..+ .++|+++.|+.++||+
T Consensus 264 ~~~~d------------s~~e~---~~~HtEFv~g~Dws~~~~------~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 264 PERQD------------SAIET---VDHHTEFVCGLDWSLFDP------GQVASTGWDELLYVWN 307 (311)
T ss_pred cccch------------hhhhh---hhccceEEeccccccccC------ceeeecccccceeeec
Confidence 97542 22222 446999999999998754 8999999999999998
No 39
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-31 Score=194.59 Aligned_cols=258 Identities=18% Similarity=0.255 Sum_probs=205.8
Q ss_pred ccccCCCCCceeeeccCCCccccccc------CCC-----CceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEE
Q 037555 18 DTLESVPDAVPAVFTEPPIEDQLAWH------TLW-----PESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIW 86 (298)
Q Consensus 18 ~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~-----~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~ 86 (298)
..+.||.-+++.+.++ ..++.+.+. .+| ..+.++.||++.|.|++.+-+.+.|++|+ .|.+++
T Consensus 4 i~l~GHERplTqiKyN-~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGS-----AD~t~k 77 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYN-REGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGS-----ADQTAK 77 (327)
T ss_pred cccccCccccceEEec-CCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeecc-----ccceeE
Confidence 3567899999998888 667776665 344 35788999999999999999999999994 599999
Q ss_pred EEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC-----CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEc
Q 037555 87 LWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR-----DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN 161 (298)
Q Consensus 87 vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 161 (298)
+||+++|+.+.++. ...+|..+.|+++|++++.+.. .+.|.++|++..........+...+..+...++.+-|.
T Consensus 78 LWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 78 LWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 99999999999888 6788999999999998887754 47899999986553332245566777788999999999
Q ss_pred cCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccC
Q 037555 162 PFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVST 241 (298)
Q Consensus 162 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 241 (298)
|.+.+|++|..||.|.+||.+++..... ....|...|+.++++++. .++++++.|.+-++||.++-.....+.
T Consensus 157 ~l~~~ii~Ghe~G~is~~da~~g~~~v~--s~~~h~~~Ind~q~s~d~-----T~FiT~s~Dttakl~D~~tl~v~Kty~ 229 (327)
T KOG0643|consen 157 PLGETIIAGHEDGSISIYDARTGKELVD--SDEEHSSKINDLQFSRDR-----TYFITGSKDTTAKLVDVRTLEVLKTYT 229 (327)
T ss_pred ccCCEEEEecCCCcEEEEEcccCceeee--chhhhccccccccccCCc-----ceEEecccCccceeeeccceeeEEEee
Confidence 9999999999999999999999865442 445688899999999999 899999999999999998654322211
Q ss_pred C-------------------CCCCccee--------------------eeeccCCcccceEEEEEeecCCCCCCCcceEE
Q 037555 242 P-------------------APSTANII--------------------IRFDPFACHVAAVNRMAWKTHEKPKNSRTMQL 282 (298)
Q Consensus 242 ~-------------------~~~~~~~~--------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 282 (298)
- +.+...-+ ..+...++|-++|++++|+|+| ...
T Consensus 230 te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdG-------ksY 302 (327)
T KOG0643|consen 230 TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDG-------KSY 302 (327)
T ss_pred ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCC-------ccc
Confidence 0 00000000 0122367899999999999999 799
Q ss_pred EeeeCCCcEEEeEe
Q 037555 283 ASCGADNTVRVFQV 296 (298)
Q Consensus 283 ~s~~~d~~i~iw~~ 296 (298)
++|++||.||+.-+
T Consensus 303 sSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 303 SSGGEDGYVRLHHF 316 (327)
T ss_pred ccCCCCceEEEEEe
Confidence 99999999998654
No 40
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=8.1e-31 Score=218.96 Aligned_cols=207 Identities=18% Similarity=0.251 Sum_probs=165.2
Q ss_pred EEeccCCCceEEEEEcC-CCCEEEeEeccCCCCceEEEEEEcCCc-------eeeeccccccccEEEEEEcCCC-CEEEE
Q 037555 50 HKLYGHGNELFSLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGSW-------KAMGRLQSHSLTVTQIRFSHDD-NLLLS 120 (298)
Q Consensus 50 ~~~~~h~~~v~~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~~ 120 (298)
..+.+|.+.|++++|+| ++.+|++++ .|++|++||+.++ +++..+.+|...|.+++|+|++ ++|++
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS-----~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaS 143 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTAS-----EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLAS 143 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEe-----CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEE
Confidence 35789999999999999 888999995 5999999999764 2456788999999999999975 69999
Q ss_pred EeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCc-
Q 037555 121 VSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSS- 199 (298)
Q Consensus 121 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~- 199 (298)
++.|+.|++||+.. ......+..|...|.+++|+|++.+|++++.|+.|++||+++++.+. .+..|...
T Consensus 144 gs~DgtVrIWDl~t-------g~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~---tl~~H~~~~ 213 (493)
T PTZ00421 144 AGADMVVNVWDVER-------GKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVS---SVEAHASAK 213 (493)
T ss_pred EeCCCEEEEEECCC-------CeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEE---EEecCCCCc
Confidence 99999999999987 45567778899999999999999999999999999999999988766 45556544
Q ss_pred eEEEEEeeccccCCccEEEEee----cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCC
Q 037555 200 VTALSWVGLDRQKNHGFLAVGM----ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPK 275 (298)
Q Consensus 200 v~~~~~~~~~~~~~~~~l~~g~----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 275 (298)
+..+.|.+.+ ..+++++ .|+.|++||+++.. .+..... . .+...+....|++++
T Consensus 214 ~~~~~w~~~~-----~~ivt~G~s~s~Dr~VklWDlr~~~------------~p~~~~~-~-d~~~~~~~~~~d~d~--- 271 (493)
T PTZ00421 214 SQRCLWAKRK-----DLIITLGCSKSQQRQIMLWDTRKMA------------SPYSTVD-L-DQSSALFIPFFDEDT--- 271 (493)
T ss_pred ceEEEEcCCC-----CeEEEEecCCCCCCeEEEEeCCCCC------------CceeEec-c-CCCCceEEEEEcCCC---
Confidence 4567888876 4555543 47899999998652 1222111 1 123456667789998
Q ss_pred CCcceEEEeee-CCCcEEEeEec
Q 037555 276 NSRTMQLASCG-ADNTVRVFQVN 297 (298)
Q Consensus 276 ~~~~~~l~s~~-~d~~i~iw~~~ 297 (298)
.+|++++ .|+.|++||+.
T Consensus 272 ----~~L~lggkgDg~Iriwdl~ 290 (493)
T PTZ00421 272 ----NLLYIGSKGEGNIRCFELM 290 (493)
T ss_pred ----CEEEEEEeCCCeEEEEEee
Confidence 7888877 59999999985
No 41
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.7e-31 Score=215.20 Aligned_cols=207 Identities=19% Similarity=0.321 Sum_probs=184.0
Q ss_pred ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeE
Q 037555 48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF 127 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 127 (298)
.++.+.-...+|..++|+..|..||.||. .=|++.||+.++...+...++|...+++++++|||+++++|+.||.|
T Consensus 299 lih~LSis~~~I~t~~~N~tGDWiA~g~~----klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKV 374 (893)
T KOG0291|consen 299 LIHSLSISDQKILTVSFNSTGDWIAFGCS----KLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKV 374 (893)
T ss_pred EEEEeecccceeeEEEecccCCEEEEcCC----ccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcE
Confidence 56777777789999999999999999984 46799999999888888899999999999999999999999999999
Q ss_pred EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC-CCCCceEEEEEe
Q 037555 128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP-PFNSSVTALSWV 206 (298)
Q Consensus 128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~~~~v~~~~~~ 206 (298)
+|||... +-+..++..|...|+.+.|+..++.+++.+-||+|+.||+...+..+ ++. +.+....+++..
T Consensus 375 KvWn~~S-------gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR---Tft~P~p~QfscvavD 444 (893)
T KOG0291|consen 375 KVWNTQS-------GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR---TFTSPEPIQFSCVAVD 444 (893)
T ss_pred EEEeccC-------ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceee---eecCCCceeeeEEEEc
Confidence 9999987 67889999999999999999999999999999999999999888776 443 234456788888
Q ss_pred eccccCCccEEEEeecCC-cEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEee
Q 037555 207 GLDRQKNHGFLAVGMESG-VIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASC 285 (298)
Q Consensus 207 ~~~~~~~~~~l~~g~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~ 285 (298)
|.| .++.+|+.|. .|++|++.++ +.+.. +.+|.++|.+++|+|++ ..|+++
T Consensus 445 ~sG-----elV~AG~~d~F~IfvWS~qTG-------------qllDi---LsGHEgPVs~l~f~~~~-------~~LaS~ 496 (893)
T KOG0291|consen 445 PSG-----ELVCAGAQDSFEIFVWSVQTG-------------QLLDI---LSGHEGPVSGLSFSPDG-------SLLASG 496 (893)
T ss_pred CCC-----CEEEeeccceEEEEEEEeecC-------------eeeeh---hcCCCCcceeeEEcccc-------CeEEec
Confidence 888 7888888876 6999999998 44333 67999999999999999 899999
Q ss_pred eCCCcEEEeEe
Q 037555 286 GADNTVRVFQV 296 (298)
Q Consensus 286 ~~d~~i~iw~~ 296 (298)
+.|.+||+||+
T Consensus 497 SWDkTVRiW~i 507 (893)
T KOG0291|consen 497 SWDKTVRIWDI 507 (893)
T ss_pred cccceEEEEEe
Confidence 99999999996
No 42
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-32 Score=195.77 Aligned_cols=203 Identities=20% Similarity=0.384 Sum_probs=172.6
Q ss_pred CCCceEEEEEcCCC-CEEEeEeccCCCCceEEEEEEcC-CceeeeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEE
Q 037555 55 HGNELFSLCCDHQG-KLVASSCKAQSTAAAEIWLWEVG-SWKAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFA 131 (298)
Q Consensus 55 h~~~v~~~~~s~~~-~~l~~~~~~~~~~d~~i~vw~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd 131 (298)
-.+.+..++|+++. ..+++++ .||.+++||+. ...++..++.|...|.++.|++ ++..+++++.|++|++|+
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~-----GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~ 133 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAAS-----GDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWD 133 (311)
T ss_pred cccceeEeeecCCCcceEEEEe-----cCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeec
Confidence 45779999999864 4555553 49999999964 3467888999999999999998 566788889999999999
Q ss_pred eccCCCCccceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555 132 IQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR 210 (298)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (298)
... ..-+.++.+|...|....|+| ..+.|++++.|+.+++||++...... .++.|...+.++.|+....
T Consensus 134 ~~r-------~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~---~i~ah~~Eil~cdw~ky~~ 203 (311)
T KOG0277|consen 134 PNR-------PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFM---SIEAHNSEILCCDWSKYNH 203 (311)
T ss_pred CCC-------CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCcee---EEEeccceeEeecccccCC
Confidence 987 455788999999999999999 56899999999999999998765444 4677889999999999875
Q ss_pred cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCc
Q 037555 211 QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNT 290 (298)
Q Consensus 211 ~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~ 290 (298)
.+++||+.|+.|+.||+++-+ .+ +.++.+|.-.|..++|||... .+|++++.|-+
T Consensus 204 ----~vl~Tg~vd~~vr~wDir~~r------------~p---l~eL~gh~~AVRkvk~Sph~~------~lLaSasYDmT 258 (311)
T KOG0277|consen 204 ----NVLATGGVDNLVRGWDIRNLR------------TP---LFELNGHGLAVRKVKFSPHHA------SLLASASYDMT 258 (311)
T ss_pred ----cEEEecCCCceEEEEehhhcc------------cc---ceeecCCceEEEEEecCcchh------hHhhhccccce
Confidence 899999999999999999764 22 333568999999999999874 79999999999
Q ss_pred EEEeEec
Q 037555 291 VRVFQVN 297 (298)
Q Consensus 291 i~iw~~~ 297 (298)
+||||..
T Consensus 259 ~riw~~~ 265 (311)
T KOG0277|consen 259 VRIWDPE 265 (311)
T ss_pred EEecccc
Confidence 9999974
No 43
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.1e-31 Score=202.67 Aligned_cols=253 Identities=19% Similarity=0.337 Sum_probs=204.0
Q ss_pred cccccceeeeecCcccccccCCCCCceeeeccCCCcc--ccccc------CCCC---------ceEEeccCCCceEEEEE
Q 037555 2 YAATRETVERHGNDGLDTLESVPDAVPAVFTEPPIED--QLAWH------TLWP---------ESHKLYGHGNELFSLCC 64 (298)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~------~~~~---------~~~~~~~h~~~v~~~~~ 64 (298)
|++..+.+.. .|+....+.+|.+++..+....++.. .++++ .+|. ..+.-.||.+.|-+++.
T Consensus 123 YDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv 201 (423)
T KOG0313|consen 123 YDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSV 201 (423)
T ss_pred cCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEe
Confidence 6677777764 57889999999999986655544433 23333 3442 12333499999999999
Q ss_pred cCCCCEEEeEeccCCCCceEEEEEEcCC-------------------------ceeeeccccccccEEEEEEcCCCCEEE
Q 037555 65 DHQGKLVASSCKAQSTAAAEIWLWEVGS-------------------------WKAMGRLQSHSLTVTQIRFSHDDNLLL 119 (298)
Q Consensus 65 s~~~~~l~~~~~~~~~~d~~i~vw~~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~ 119 (298)
.++|..+++|+. |.+|+||+..+ +.++.++.+|..+|.++.|++ ...++
T Consensus 202 ~~sgtr~~SgS~-----D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~y 275 (423)
T KOG0313|consen 202 DSSGTRFCSGSW-----DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIY 275 (423)
T ss_pred cCCCCeEEeecc-----cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceE
Confidence 999999999965 89999999321 234556789999999999997 66899
Q ss_pred EEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCc
Q 037555 120 SVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSS 199 (298)
Q Consensus 120 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 199 (298)
+++.|.+|+.||+.++ .....+.. +..++++..+|..++|++|+.|..|++||.+++........+.+|+..
T Consensus 276 S~SwDHTIk~WDletg-------~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nw 347 (423)
T KOG0313|consen 276 SVSWDHTIKVWDLETG-------GLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNW 347 (423)
T ss_pred eecccceEEEEEeecc-------cceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhh
Confidence 9999999999999984 34444443 567899999999999999999999999999988766555678899999
Q ss_pred eEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcc
Q 037555 200 VTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRT 279 (298)
Q Consensus 200 v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 279 (298)
|.++.|+|... ..|++|+.|+++++||+++.. .++.. +.+|...|.++.|+..+
T Consensus 348 Vssvkwsp~~~----~~~~S~S~D~t~klWDvRS~k------------~plyd---I~~h~DKvl~vdW~~~~------- 401 (423)
T KOG0313|consen 348 VSSVKWSPTNE----FQLVSGSYDNTVKLWDVRSTK------------APLYD---IAGHNDKVLSVDWNEGG------- 401 (423)
T ss_pred hhheecCCCCc----eEEEEEecCCeEEEEEeccCC------------Cccee---eccCCceEEEEeccCCc-------
Confidence 99999999886 789999999999999999763 24444 55799999999998765
Q ss_pred eEEEeeeCCCcEEEeEe
Q 037555 280 MQLASCGADNTVRVFQV 296 (298)
Q Consensus 280 ~~l~s~~~d~~i~iw~~ 296 (298)
++++||.|++|+|+.-
T Consensus 402 -~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 402 -LIVSGGADNKLRIFKG 417 (423)
T ss_pred -eEEeccCcceEEEecc
Confidence 9999999999999863
No 44
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=5.3e-30 Score=215.20 Aligned_cols=209 Identities=15% Similarity=0.205 Sum_probs=158.8
Q ss_pred ceEEeccCCCceEEEEEcCC-CCEEEeEeccCCCCceEEEEEEcCCce--------eeeccccccccEEEEEEcCCCCE-
Q 037555 48 ESHKLYGHGNELFSLCCDHQ-GKLVASSCKAQSTAAAEIWLWEVGSWK--------AMGRLQSHSLTVTQIRFSHDDNL- 117 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~-~~~l~~~~~~~~~~d~~i~vw~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~- 117 (298)
.+..+.+|.++|.+++|+|+ +.+|++|+ .|+.|+|||+.++. ++..+.+|...|.+++|+|++..
T Consensus 66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS-----~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~i 140 (568)
T PTZ00420 66 PVIKLKGHTSSILDLQFNPCFSEILASGS-----EDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYI 140 (568)
T ss_pred eEEEEcCCCCCEEEEEEcCCCCCEEEEEe-----CCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeE
Confidence 56788999999999999996 78999995 59999999997542 23457789999999999998875
Q ss_pred EEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCC
Q 037555 118 LLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFN 197 (298)
Q Consensus 118 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 197 (298)
|++++.|+.|++||++.. .....+. |...|.+++|+|++.+|++++.|+.|++||+++++.+. .+.+|.
T Consensus 141 LaSgS~DgtIrIWDl~tg-------~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~---tl~gH~ 209 (568)
T PTZ00420 141 MCSSGFDSFVNIWDIENE-------KRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIAS---SFHIHD 209 (568)
T ss_pred EEEEeCCCeEEEEECCCC-------cEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEE---EEeccc
Confidence 578999999999999873 3344443 56789999999999999999999999999999988776 566777
Q ss_pred CceEEEEE-----eeccccCCccEEEEeecCC----cEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEe
Q 037555 198 SSVTALSW-----VGLDRQKNHGFLAVGMESG----VIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAW 268 (298)
Q Consensus 198 ~~v~~~~~-----~~~~~~~~~~~l~~g~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 268 (298)
+.+.+..+ ++++ .+|++++.|+ .|+|||++... .++..+. +..+.+.+.....
T Consensus 210 g~~~s~~v~~~~fs~d~-----~~IlTtG~d~~~~R~VkLWDlr~~~------------~pl~~~~-ld~~~~~L~p~~D 271 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDD-----NYILSTGFSKNNMREMKLWDLKNTT------------SALVTMS-IDNASAPLIPHYD 271 (568)
T ss_pred CCceeEEEEeeeEcCCC-----CEEEEEEcCCCCccEEEEEECCCCC------------CceEEEE-ecCCccceEEeee
Confidence 66544433 3554 6788877664 79999998632 2332221 2223333333333
Q ss_pred ecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 269 KTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 269 ~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.+++ .++++|+.|+.|++|++.
T Consensus 272 ~~tg-------~l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 272 ESTG-------LIYLIGKGDGNCRYYQHS 293 (568)
T ss_pred CCCC-------CEEEEEECCCeEEEEEcc
Confidence 4445 789999999999999974
No 45
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7e-31 Score=188.12 Aligned_cols=204 Identities=15% Similarity=0.217 Sum_probs=182.0
Q ss_pred ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeE
Q 037555 48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF 127 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 127 (298)
..+.+..|+++|.++.|+-+|++.++++ .|.+|++|+...+.+++++.+|...|..++.+.|+..|++|+.|..+
T Consensus 9 r~~~l~~~qgaV~avryN~dGnY~ltcG-----sdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v 83 (307)
T KOG0316|consen 9 RLSILDCAQGAVRAVRYNVDGNYCLTCG-----SDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAV 83 (307)
T ss_pred hceeecccccceEEEEEccCCCEEEEcC-----CCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceE
Confidence 4677889999999999999999999995 49999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555 128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG 207 (298)
Q Consensus 128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (298)
.+||+.+ ++..+.+.+|...|+.++|+.+...+++|+-|.++++||.+.... .+++.+......|.++....
T Consensus 84 ~vwDV~T-------Gkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~-ePiQildea~D~V~Si~v~~ 155 (307)
T KOG0316|consen 84 QVWDVNT-------GKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF-EPIQILDEAKDGVSSIDVAE 155 (307)
T ss_pred EEEEccc-------CeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCC-CccchhhhhcCceeEEEecc
Confidence 9999998 788999999999999999999999999999999999999987543 34446767788899998877
Q ss_pred ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC
Q 037555 208 LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA 287 (298)
Q Consensus 208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~ 287 (298)
..|++|+.||+++.||++.++ .... -...+|++++|++++ +..+.++.
T Consensus 156 -------heIvaGS~DGtvRtydiR~G~-------------l~sD-----y~g~pit~vs~s~d~-------nc~La~~l 203 (307)
T KOG0316|consen 156 -------HEIVAGSVDGTVRTYDIRKGT-------------LSSD-----YFGHPITSVSFSKDG-------NCSLASSL 203 (307)
T ss_pred -------cEEEeeccCCcEEEEEeecce-------------eehh-----hcCCcceeEEecCCC-------CEEEEeec
Confidence 579999999999999999873 2222 245799999999999 89999999
Q ss_pred CCcEEEeEe
Q 037555 288 DNTVRVFQV 296 (298)
Q Consensus 288 d~~i~iw~~ 296 (298)
|++|++.|-
T Consensus 204 ~stlrLlDk 212 (307)
T KOG0316|consen 204 DSTLRLLDK 212 (307)
T ss_pred cceeeeccc
Confidence 999999773
No 46
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=8.2e-30 Score=202.47 Aligned_cols=249 Identities=24% Similarity=0.407 Sum_probs=208.7
Q ss_pred ccccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEE
Q 037555 3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLV 71 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l 71 (298)
++.++.++..+++....+..|...+..+.+.+. +..++.. .+|+ ....+..|...|.++.|++++.++
T Consensus 30 ~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (289)
T cd00200 30 DGTIKVWDLETGELLRTLKGHTGPVRDVAASAD-GTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRIL 108 (289)
T ss_pred CcEEEEEEeeCCCcEEEEecCCcceeEEEECCC-CCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEE
Confidence 456677888888888888999999988888844 4444443 2342 456677899999999999998888
Q ss_pred EeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc
Q 037555 72 ASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH 151 (298)
Q Consensus 72 ~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 151 (298)
++++ .++.|++|++.+++....+..|...+.+++|+|++.++++++.++.|++||++. ......+..|
T Consensus 109 ~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~-------~~~~~~~~~~ 176 (289)
T cd00200 109 SSSS-----RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT-------GKCVATLTGH 176 (289)
T ss_pred EEec-----CCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccc-------cccceeEecC
Confidence 8884 489999999998888888888999999999999988888888899999999986 4456666788
Q ss_pred CCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEe
Q 037555 152 KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSI 231 (298)
Q Consensus 152 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~ 231 (298)
...+.++.|+|+++.+++++.|+.|++||++..+... .+..+...+.++.|+|++ .++++++.++.|++|++
T Consensus 177 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~---~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~i~i~~~ 248 (289)
T cd00200 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG---TLRGHENGVNSVAFSPDG-----YLLASGSEDGTIRVWDL 248 (289)
T ss_pred ccccceEEECCCcCEEEEecCCCcEEEEECCCCceec---chhhcCCceEEEEEcCCC-----cEEEEEcCCCcEEEEEc
Confidence 8899999999999999999999999999999877665 555678899999999986 78888888999999999
Q ss_pred eecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555 232 SVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ 295 (298)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~ 295 (298)
.+. .....+ ..|...|.+++|+|++ .+|++++.|+.|++|+
T Consensus 249 ~~~-------------~~~~~~---~~~~~~i~~~~~~~~~-------~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 249 RTG-------------ECVQTL---SGHTNSVTSLAWSPDG-------KRLASGSADGTIRIWD 289 (289)
T ss_pred CCc-------------eeEEEc---cccCCcEEEEEECCCC-------CEEEEecCCCeEEecC
Confidence 865 444443 3688899999999998 8999999999999996
No 47
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.98 E-value=4.5e-31 Score=214.85 Aligned_cols=270 Identities=40% Similarity=0.669 Sum_probs=214.9
Q ss_pred cCCCCCceeeeccCCCcccccccCCCCceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc
Q 037555 21 ESVPDAVPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ 100 (298)
Q Consensus 21 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~ 100 (298)
+......++..+.||.++++....+||++++++||..+|+|++.+|+|+++|++++.+..+...|++|+..+...++.+.
T Consensus 490 et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~ 569 (764)
T KOG1063|consen 490 ETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE 569 (764)
T ss_pred ecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec
Confidence 33334556777789999999999999999999999999999999999999999999877778899999999988888899
Q ss_pred cccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEE
Q 037555 101 SHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWA 180 (298)
Q Consensus 101 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd 180 (298)
+|.-.|+.++|+||+++|++.++|+++.+|.......... .....+.|...|+++.|+|++.+|+++|.|.+|++|.
T Consensus 570 ~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~---~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 570 GHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEF---RFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred ccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhh---hhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence 9999999999999999999999999999999865433322 1334678999999999999999999999999999999
Q ss_pred ccCC--cceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCc
Q 037555 181 VENK--SSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFAC 258 (298)
Q Consensus 181 ~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (298)
.... +.+..+ ....+...|+.+++.|.........++.|.+.|.|.+|......+... .........+....+
T Consensus 647 ~~~~~d~~i~~~-a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~----~~~~~~~~~l~~~~~ 721 (764)
T KOG1063|consen 647 EPDLRDKYISRF-ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVT----VGTFNLDTRLCATIG 721 (764)
T ss_pred ccCchhhhhhhh-chhccCCceeeEEeeccccccccceEEEEecccEEEEEeccccccccc----ceeeeeccccccccC
Confidence 8877 444433 223478899999999976544456889999999999999653221111 011123334445667
Q ss_pred ccceEEEEEeecCCCCC---CCcceEEEeeeCCCcEEEeEecC
Q 037555 259 HVAAVNRMAWKTHEKPK---NSRTMQLASCGADNTVRVFQVNV 298 (298)
Q Consensus 259 ~~~~v~~~~~~~~~~~~---~~~~~~l~s~~~d~~i~iw~~~~ 298 (298)
|...|+.+.|.|..... ..+...|++|+.|..+|+++++.
T Consensus 722 ~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~~ 764 (764)
T KOG1063|consen 722 PDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVDD 764 (764)
T ss_pred hHHhhheeEeccccccccccccceeEEeeecccceeEEeeccC
Confidence 89999999999863211 11225679999999999998763
No 48
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=9e-31 Score=211.08 Aligned_cols=247 Identities=17% Similarity=0.209 Sum_probs=208.7
Q ss_pred cccccceeeeecCcccccccCCCCCceeeeccCCCccccccc-----------CCCCceEEeccCCCceEEEEEcCCCCE
Q 037555 2 YAATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH-----------TLWPESHKLYGHGNELFSLCCDHQGKL 70 (298)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~h~~~v~~~~~s~~~~~ 70 (298)
|++..+.++.++...+..++--.-+|....|- +....++.+ .....++.|..|.+-|.|++.+|..++
T Consensus 33 ynG~V~IWnyetqtmVksfeV~~~PvRa~kfi-aRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~ 111 (794)
T KOG0276|consen 33 YNGDVQIWNYETQTMVKSFEVSEVPVRAAKFI-ARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPY 111 (794)
T ss_pred ecCeeEEEecccceeeeeeeecccchhhheee-eccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCe
Confidence 67888899999999999999888888887777 444444444 123468899999999999999999999
Q ss_pred EEeEeccCCCCceEEEEEEcCCc-eeeeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEe
Q 037555 71 VASSCKAQSTAAAEIWLWEVGSW-KAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQ 148 (298)
Q Consensus 71 l~~~~~~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 148 (298)
+.++ ++|-.|++||.+.. .+.++|.+|+..|.+++|.| |.+.+++++-|++|++|.+.. ..+..++
T Consensus 112 vLts-----SDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs-------~~~nfTl 179 (794)
T KOG0276|consen 112 VLTS-----SDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS-------PHPNFTL 179 (794)
T ss_pred EEec-----CCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC-------CCCceee
Confidence 9999 56999999999754 56788999999999999999 778999999999999999987 5567889
Q ss_pred eccCCceEEEEEccCC--CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcE
Q 037555 149 EAHKRIIWSCSWNPFG--HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVI 226 (298)
Q Consensus 149 ~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i 226 (298)
.+|...|+++++-+.+ .+|++|++|..|++||..+..+++ ++.+|...|..+.|+|.- .++++|++||++
T Consensus 180 ~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~---TLeGHt~Nvs~v~fhp~l-----piiisgsEDGTv 251 (794)
T KOG0276|consen 180 EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQ---TLEGHTNNVSFVFFHPEL-----PIIISGSEDGTV 251 (794)
T ss_pred eccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHH---HhhcccccceEEEecCCC-----cEEEEecCCccE
Confidence 9999999999998744 699999999999999999999988 899999999999999988 699999999999
Q ss_pred EEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEE
Q 037555 227 ELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVR 292 (298)
Q Consensus 227 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 292 (298)
+||+..+.+.. ..+ .-....|++++-.+.+ +.++.|...|.|.
T Consensus 252 riWhs~Ty~lE-------------~tL---n~gleRvW~I~~~k~~-------~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 252 RIWNSKTYKLE-------------KTL---NYGLERVWCIAAHKGD-------GKIAVGFDEGSVT 294 (794)
T ss_pred EEecCcceehh-------------hhh---hcCCceEEEEeecCCC-------CeEEEeccCCcEE
Confidence 99998876322 222 2245788888887776 6677777666654
No 49
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.98 E-value=5.3e-31 Score=204.74 Aligned_cols=253 Identities=21% Similarity=0.317 Sum_probs=196.4
Q ss_pred cCCCCCceeeeccCCCcccccccC------CC---------------CceEEeccCCCceEEEEEcCCCC-EEEeEeccC
Q 037555 21 ESVPDAVPAVFTEPPIEDQLAWHT------LW---------------PESHKLYGHGNELFSLCCDHQGK-LVASSCKAQ 78 (298)
Q Consensus 21 ~~~~~~v~~~~~~~~~~~~~~~~~------~~---------------~~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~~~ 78 (298)
-.|++.|..+..-|.....+++.. +| ++-.+|.||+.+-++++|++... .|+++
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~---- 196 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG---- 196 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec----
Confidence 457777777766665555555431 11 12347889999899999998544 56666
Q ss_pred CCCceEEEEEEcCCce-------eeeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeec
Q 037555 79 STAAAEIWLWEVGSWK-------AMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEA 150 (298)
Q Consensus 79 ~~~d~~i~vw~~~~~~-------~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 150 (298)
+.|+.|.+||+.... +...+.+|+..|..++|++ +..+|++++.|+.+.|||.++. . .++.....+
T Consensus 197 -~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~-~----~~~~~~~~a 270 (422)
T KOG0264|consen 197 -SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN-T----SKPSHSVKA 270 (422)
T ss_pred -cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-C----CCCcccccc
Confidence 469999999996432 2345789999999999999 5678999999999999999963 1 455677789
Q ss_pred cCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEE
Q 037555 151 HKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELW 229 (298)
Q Consensus 151 ~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vw 229 (298)
|.++|++++|+| ++..||+|+.|++|.+||+|+... .+..+.+|...|.++.|+|... .+|++++.|+.+.||
T Consensus 271 h~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H~dev~~V~WSPh~e----tvLASSg~D~rl~vW 344 (422)
T KOG0264|consen 271 HSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK--PLHTFEGHEDEVFQVEWSPHNE----TVLASSGTDRRLNVW 344 (422)
T ss_pred cCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc--CceeccCCCcceEEEEeCCCCC----ceeEecccCCcEEEE
Confidence 999999999999 667889999999999999998765 4458889999999999999875 899999999999999
Q ss_pred EeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 230 SISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
|+..-...+....+ ...+...+....||...|..+.|+|+.+ ..|++++.|+.+.||++.
T Consensus 345 Dls~ig~eq~~eda--~dgppEllF~HgGH~~kV~DfsWnp~eP------W~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 345 DLSRIGEEQSPEDA--EDGPPELLFIHGGHTAKVSDFSWNPNEP------WTIASVAEDNILQIWQMA 404 (422)
T ss_pred eccccccccChhhh--ccCCcceeEEecCcccccccccCCCCCC------eEEEEecCCceEEEeecc
Confidence 99764332221111 1122222233678999999999999986 789999999999999864
No 50
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.98 E-value=1.3e-29 Score=201.39 Aligned_cols=237 Identities=25% Similarity=0.399 Sum_probs=199.3
Q ss_pred cccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEE
Q 037555 17 LDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEI 85 (298)
Q Consensus 17 ~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i 85 (298)
+..+.+|.+.|.++.+.| .+..++.+ .+|+ ....+..|...+..+.|+|+++.|++++ .++.|
T Consensus 2 ~~~~~~h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~~~~i 75 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGS-----SDKTI 75 (289)
T ss_pred chHhcccCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEc-----CCCeE
Confidence 457789999999999995 45555554 2453 3466778999999999999999999994 48999
Q ss_pred EEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCC
Q 037555 86 WLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGH 165 (298)
Q Consensus 86 ~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 165 (298)
++|++.+++.+..+..|...+.++.|+++++++++++.++.+.+||+.. ......+..|...+.+++|+|++.
T Consensus 76 ~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~~~~~~~i~~~~~~~~~~ 148 (289)
T cd00200 76 RLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET-------GKCLTTLRGHTDWVNSVAFSPDGT 148 (289)
T ss_pred EEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC-------cEEEEEeccCCCcEEEEEEcCcCC
Confidence 9999998888888888999999999999988888888899999999985 455666778889999999999988
Q ss_pred EEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCC
Q 037555 166 EFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPS 245 (298)
Q Consensus 166 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~ 245 (298)
++++++.|+.|++||++..+... .+..+...+.++.|+|++ ..+++++.++.|++||++..
T Consensus 149 ~l~~~~~~~~i~i~d~~~~~~~~---~~~~~~~~i~~~~~~~~~-----~~l~~~~~~~~i~i~d~~~~----------- 209 (289)
T cd00200 149 FVASSSQDGTIKLWDLRTGKCVA---TLTGHTGEVNSVAFSPDG-----EKLLSSSSDGTIKLWDLSTG----------- 209 (289)
T ss_pred EEEEEcCCCcEEEEEccccccce---eEecCccccceEEECCCc-----CEEEEecCCCcEEEEECCCC-----------
Confidence 88888889999999999877766 455677899999999988 68888888999999999865
Q ss_pred CcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 246 TANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 246 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
..... +..|...|.+++|+|++ .++++++.|+.|++|++.
T Consensus 210 --~~~~~---~~~~~~~i~~~~~~~~~-------~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 210 --KCLGT---LRGHENGVNSVAFSPDG-------YLLASGSEDGTIRVWDLR 249 (289)
T ss_pred --ceecc---hhhcCCceEEEEEcCCC-------cEEEEEcCCCcEEEEEcC
Confidence 33333 33578899999999997 788888889999999975
No 51
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.5e-30 Score=203.93 Aligned_cols=233 Identities=18% Similarity=0.313 Sum_probs=189.5
Q ss_pred ccCCCCCceeeeccCCCccccccc-----CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEE
Q 037555 20 LESVPDAVPAVFTEPPIEDQLAWH-----TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWE 89 (298)
Q Consensus 20 ~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~ 89 (298)
+....+.|..+.|+|.....++.. .++. ..+++...++.|.++.|..||++||+| ++.|.|+|+|
T Consensus 22 ~~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaG-----D~sG~V~vfD 96 (487)
T KOG0310|consen 22 VHKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAG-----DESGHVKVFD 96 (487)
T ss_pred cccccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEcc-----CCcCcEEEec
Confidence 344456889999997555444333 1221 244456678899999999999999999 7799999999
Q ss_pred cCCceeeeccccccccEEEEEEcCCC-CEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC-CCEE
Q 037555 90 VGSWKAMGRLQSHSLTVTQIRFSHDD-NLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF-GHEF 167 (298)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l 167 (298)
..+...+..+.+|+.+|..+.|+|++ ..+++|+.|+.+++||+.+ ......+.+|.+.|.+.+|+|. +..+
T Consensus 97 ~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~-------a~v~~~l~~htDYVR~g~~~~~~~hiv 169 (487)
T KOG0310|consen 97 MKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLST-------AYVQAELSGHTDYVRCGDISPANDHIV 169 (487)
T ss_pred cccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCC-------cEEEEEecCCcceeEeeccccCCCeEE
Confidence 87777788899999999999999954 5778889999999999997 4446688999999999999995 5689
Q ss_pred EEeeCCCeEEEEEccCCc-ceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCC
Q 037555 168 ATGSRDKTVKIWAVENKS-SVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPST 246 (298)
Q Consensus 168 ~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 246 (298)
++|+.||.|++||++... .+. .+. |..+|.++.+-|.+ ..+++++ ...|+|||+.++.
T Consensus 170 vtGsYDg~vrl~DtR~~~~~v~---eln-hg~pVe~vl~lpsg-----s~iasAg-Gn~vkVWDl~~G~----------- 228 (487)
T KOG0310|consen 170 VTGSYDGKVRLWDTRSLTSRVV---ELN-HGCPVESVLALPSG-----SLIASAG-GNSVKVWDLTTGG----------- 228 (487)
T ss_pred EecCCCceEEEEEeccCCceeE---Eec-CCCceeeEEEcCCC-----CEEEEcC-CCeEEEEEecCCc-----------
Confidence 999999999999999874 333 554 89999999999998 6787776 4679999999763
Q ss_pred cceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 247 ANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 247 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
+.+.. +..|...|+|+++..++ ..|+++|-|+.+++||+
T Consensus 229 -qll~~---~~~H~KtVTcL~l~s~~-------~rLlS~sLD~~VKVfd~ 267 (487)
T KOG0310|consen 229 -QLLTS---MFNHNKTVTCLRLASDS-------TRLLSGSLDRHVKVFDT 267 (487)
T ss_pred -eehhh---hhcccceEEEEEeecCC-------ceEeecccccceEEEEc
Confidence 22222 33499999999999998 89999999999999995
No 52
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.98 E-value=2.8e-31 Score=207.74 Aligned_cols=222 Identities=18% Similarity=0.305 Sum_probs=181.1
Q ss_pred ceEEeccCCCceEEEEEcC-CCCEEEeEeccCCCCceEEEEEEcCC-ceeeeccccccccEEEEEEcCCCCEEEEEeCCC
Q 037555 48 ESHKLYGHGNELFSLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGS-WKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDR 125 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 125 (298)
.+..+.||+..|+++.|.| .+.+|+++ +.|+.|+||++-. ++++++|.+|..+|.+++|+++|..+++++.|+
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~-----gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~ 280 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSG-----GMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR 280 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEec-----CCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecce
Confidence 4688899999999999999 88889999 4599999999865 889999999999999999999999999999999
Q ss_pred eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCC-CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEE
Q 037555 126 QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG-HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALS 204 (298)
Q Consensus 126 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~ 204 (298)
.|++||.++ +.+...+. ....++++.|+|++ +.|++|+.|+.|+.||+++++.++ .+..|-+.|..+.
T Consensus 281 ~lKlwDtET-------G~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq---eYd~hLg~i~~i~ 349 (503)
T KOG0282|consen 281 FLKLWDTET-------GQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ---EYDRHLGAILDIT 349 (503)
T ss_pred eeeeecccc-------ceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH---HHHhhhhheeeeE
Confidence 999999998 55566554 35677999999988 899999999999999999999887 6777889999999
Q ss_pred EeeccccCCccEEEEeecCCcEEEEEeeecccccc-----------cCCCCC--------Ccceeeee-----------c
Q 037555 205 WVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDV-----------STPAPS--------TANIIIRF-----------D 254 (298)
Q Consensus 205 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~-----------~~~~~~--------~~~~~~~~-----------~ 254 (298)
|-+.+ ..+++.++|+.++||+.+..-.... ....+. -.+.+..+ .
T Consensus 350 F~~~g-----~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK 424 (503)
T KOG0282|consen 350 FVDEG-----RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKK 424 (503)
T ss_pred EccCC-----ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhh
Confidence 99999 7999999999999999876421110 000010 00111111 1
Q ss_pred cCCccc--ceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 255 PFACHV--AAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 255 ~~~~~~--~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.+.+|. +--..+.||||+ .+|++|+.||.+.+||.+
T Consensus 425 ~feGh~vaGys~~v~fSpDG-------~~l~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 425 RFEGHSVAGYSCQVDFSPDG-------RTLCSGDSDGKVNFWDWK 462 (503)
T ss_pred hhcceeccCceeeEEEcCCC-------CeEEeecCCccEEEeech
Confidence 144554 335678999999 899999999999999964
No 53
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.8e-30 Score=211.67 Aligned_cols=257 Identities=25% Similarity=0.366 Sum_probs=216.5
Q ss_pred cccceeeeecCcccccccC-CCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCC--
Q 037555 4 ATRETVERHGNDGLDTLES-VPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGK-- 69 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~-- 69 (298)
..++.+.-++|+.+..++. |..+|..+.|.|. +..++++ ++|+ +.+.|+||.+.|.++.|+|+-.
T Consensus 84 ~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~-g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~ 162 (775)
T KOG0319|consen 84 QLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPT-GTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRW 162 (775)
T ss_pred ceEEEEEcccchHhHhHhhccCCCeEEEEEcCC-CceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchh
Confidence 3567888999999999998 9999999999954 4566665 5775 5789999999999999999755
Q ss_pred EEEeEeccCCCCceEEEEEEcCCcee-eeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc--------
Q 037555 70 LVASSCKAQSTAAAEIWLWEVGSWKA-MGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI-------- 140 (298)
Q Consensus 70 ~l~~~~~~~~~~d~~i~vw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------- 140 (298)
.|++| ..|+++++||+++... +..+..|.+.|+++.|.+|+..++++++|..+.+||+..-+....
T Consensus 163 lL~sg-----~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E 237 (775)
T KOG0319|consen 163 LLASG-----ATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLE 237 (775)
T ss_pred heeec-----CCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhhee
Confidence 46777 5699999999985544 788889999999999999999999999999999999853210000
Q ss_pred --------------------------------------------------------------------------------
Q 037555 141 -------------------------------------------------------------------------------- 140 (298)
Q Consensus 141 -------------------------------------------------------------------------------- 140 (298)
T Consensus 238 ~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k 317 (775)
T KOG0319|consen 238 SVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVK 317 (775)
T ss_pred eEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEeh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 037555 141 -------------------------------------------------------------------------------- 140 (298)
Q Consensus 141 -------------------------------------------------------------------------------- 140 (298)
T Consensus 318 ~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~ 397 (775)
T KOG0319|consen 318 QIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNN 397 (775)
T ss_pred hhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCC
Confidence
Q ss_pred ----------------------------------------ce----------eeeE----EeeccCCceEEEEEccCCCE
Q 037555 141 ----------------------------------------DY----------QLIA----RQEAHKRIIWSCSWNPFGHE 166 (298)
Q Consensus 141 ----------------------------------------~~----------~~~~----~~~~~~~~v~~~~~~~~~~~ 166 (298)
.+ .... ....|...|++++.+|+..+
T Consensus 398 ~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkL 477 (775)
T KOG0319|consen 398 CSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKL 477 (775)
T ss_pred cchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCce
Confidence 00 0011 22358888999999999999
Q ss_pred EEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCC
Q 037555 167 FATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPST 246 (298)
Q Consensus 167 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 246 (298)
+++||.|.+.++|++++..... .+.+|...|.++.|+|.. +.+++++.|++|+||.+.+.
T Consensus 478 iAT~SqDktaKiW~le~~~l~~---vLsGH~RGvw~V~Fs~~d-----q~laT~SgD~TvKIW~is~f------------ 537 (775)
T KOG0319|consen 478 IATGSQDKTAKIWDLEQLRLLG---VLSGHTRGVWCVSFSKND-----QLLATCSGDKTVKIWSISTF------------ 537 (775)
T ss_pred EEecccccceeeecccCceEEE---EeeCCccceEEEEecccc-----ceeEeccCCceEEEEEeccc------------
Confidence 9999999999999999776666 888999999999999998 79999999999999999988
Q ss_pred cceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 247 ANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 247 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.++.. +.+|...|..+.|-.++ ..|++|+.||.|++|+++
T Consensus 538 -SClkT---~eGH~~aVlra~F~~~~-------~qliS~~adGliKlWnik 577 (775)
T KOG0319|consen 538 -SCLKT---FEGHTSAVLRASFIRNG-------KQLISAGADGLIKLWNIK 577 (775)
T ss_pred -eeeee---ecCccceeEeeeeeeCC-------cEEEeccCCCcEEEEecc
Confidence 77777 55899999999999999 899999999999999975
No 54
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.8e-30 Score=213.46 Aligned_cols=259 Identities=17% Similarity=0.249 Sum_probs=215.2
Q ss_pred ccccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEE
Q 037555 3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLV 71 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l 71 (298)
.+.++.|+-+=|.++..+..|.++|..+.|.|. +..++++ +.|. ++.++.||-+-|..+.|++.-..+
T Consensus 30 sG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~-qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWI 108 (1202)
T KOG0292|consen 30 SGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPT-QPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWI 108 (1202)
T ss_pred CceeeeehhhhhhHHhhhhccCCccceeeecCC-CCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceE
Confidence 467889999999999999999999999999954 4444444 4663 678889999999999999999999
Q ss_pred EeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCC-------------
Q 037555 72 ASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTG------------- 138 (298)
Q Consensus 72 ~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------------- 138 (298)
+++ ++|.+|+||+.++++++..+++|...|.|.+|+|...+++++|-|-+|++||+..-...
T Consensus 109 lSA-----SDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~ 183 (1202)
T KOG0292|consen 109 LSA-----SDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRG 183 (1202)
T ss_pred EEc-----cCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhc
Confidence 999 45999999999999999999999999999999999999999999999999998632111
Q ss_pred ---------ccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecc
Q 037555 139 ---------EIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLD 209 (298)
Q Consensus 139 ---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (298)
..+.-....+.+|...|+-++|+|.-..|++|++|..|++|.+...+. .++.+..+|...|.++-|+|..
T Consensus 184 ~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa-WEvDtcrgH~nnVssvlfhp~q 262 (1202)
T KOG0292|consen 184 QQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-WEVDTCRGHYNNVSSVLFHPHQ 262 (1202)
T ss_pred cccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc-eeehhhhcccCCcceEEecCcc
Confidence 002334467789999999999999999999999999999999976554 3444677899999999999987
Q ss_pred ccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCC
Q 037555 210 RQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADN 289 (298)
Q Consensus 210 ~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~ 289 (298)
+++++.++|+.|+|||+... ..+..+. ......+.++-+|.. +++++|- |+
T Consensus 263 -----~lIlSnsEDksirVwDm~kR-------------t~v~tfr---rendRFW~laahP~l-------NLfAAgH-Ds 313 (1202)
T KOG0292|consen 263 -----DLILSNSEDKSIRVWDMTKR-------------TSVQTFR---RENDRFWILAAHPEL-------NLFAAGH-DS 313 (1202)
T ss_pred -----ceeEecCCCccEEEEecccc-------------cceeeee---ccCCeEEEEEecCCc-------ceeeeec-CC
Confidence 79999999999999999876 4455543 356778889999988 6666555 55
Q ss_pred cEEEeEec
Q 037555 290 TVRVFQVN 297 (298)
Q Consensus 290 ~i~iw~~~ 297 (298)
-+.+|.+.
T Consensus 314 Gm~VFkle 321 (1202)
T KOG0292|consen 314 GMIVFKLE 321 (1202)
T ss_pred ceEEEEEc
Confidence 56666653
No 55
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=4.7e-30 Score=195.36 Aligned_cols=239 Identities=20% Similarity=0.307 Sum_probs=188.2
Q ss_pred CCCCCceeeeccCCCccccccc------CCCC----ceEEeccCCCceEEEEEcCC---CCEEEeEeccCCCCceEEEEE
Q 037555 22 SVPDAVPAVFTEPPIEDQLAWH------TLWP----ESHKLYGHGNELFSLCCDHQ---GKLVASSCKAQSTAAAEIWLW 88 (298)
Q Consensus 22 ~~~~~v~~~~~~~~~~~~~~~~------~~~~----~~~~~~~h~~~v~~~~~s~~---~~~l~~~~~~~~~~d~~i~vw 88 (298)
.|++-|..+... ++.+.++ ++|+ ..+.+.||.++|.+++|.-. ...|++++ .|.++++|
T Consensus 103 ~hdDWVSsv~~~---~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas-----~Dqtl~Lw 174 (423)
T KOG0313|consen 103 LHDDWVSSVKGA---SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSAS-----MDQTLRLW 174 (423)
T ss_pred cchhhhhhhccc---CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEec-----CCceEEEE
Confidence 344555444333 3444444 4664 57889999999998888432 33588884 58999999
Q ss_pred EcCCceee----eccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCC------------------ccceeeeE
Q 037555 89 EVGSWKAM----GRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTG------------------EIDYQLIA 146 (298)
Q Consensus 89 ~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------------------~~~~~~~~ 146 (298)
..+.++.. ...++|...|-++...+++..+++|+.|..|.+|+....... .....++.
T Consensus 175 ~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 175 KWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred EecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 98876543 334699999999999999999999999999999993321100 01245677
Q ss_pred EeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcE
Q 037555 147 RQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVI 226 (298)
Q Consensus 147 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i 226 (298)
.+.+|..+|.++.|++ ...+++++.|.+|+.||+.++.... ++. .+....++..+|.. .+|++|+.|..|
T Consensus 255 tl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~---~~~-~~ksl~~i~~~~~~-----~Ll~~gssdr~i 324 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKS---TLT-TNKSLNCISYSPLS-----KLLASGSSDRHI 324 (423)
T ss_pred EecccccceeeEEEcC-CCceEeecccceEEEEEeeccccee---eee-cCcceeEeeccccc-----ceeeecCCCCce
Confidence 8889999999999997 7789999999999999999998876 444 46778999999987 799999999999
Q ss_pred EEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 227 ELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 227 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
++||.+++. ..+. ...+.+|...|.++.|+|... .+|++++.|+++++||++
T Consensus 325 rl~DPR~~~------------gs~v-~~s~~gH~nwVssvkwsp~~~------~~~~S~S~D~t~klWDvR 376 (423)
T KOG0313|consen 325 RLWDPRTGD------------GSVV-SQSLIGHKNWVSSVKWSPTNE------FQLVSGSYDNTVKLWDVR 376 (423)
T ss_pred eecCCCCCC------------Ccee-EEeeecchhhhhheecCCCCc------eEEEEEecCCeEEEEEec
Confidence 999999873 1222 223678999999999999875 899999999999999986
No 56
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=4.3e-29 Score=197.56 Aligned_cols=263 Identities=15% Similarity=0.257 Sum_probs=210.0
Q ss_pred ecCcccccccCCCCCceeeeccCCCccccccc------CCCCc-------eEEeccCCCceEEEEEcCCCCEEEeEeccC
Q 037555 12 HGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWPE-------SHKLYGHGNELFSLCCDHQGKLVASSCKAQ 78 (298)
Q Consensus 12 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~-------~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~ 78 (298)
++.........|...++...++ |.+..++++ ++|+. ...++.-.++|..++|+.+++++++.+..+
T Consensus 47 ~~~~~~~iYtEH~~~vtVAkyS-PsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGr 125 (603)
T KOG0318|consen 47 DNPASVDIYTEHAHQVTVAKYS-PSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGR 125 (603)
T ss_pred CCccceeeeccccceeEEEEeC-CCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCc
Confidence 3444566678898888988888 557788887 67753 234555678999999999999999887622
Q ss_pred CCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCC-EEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEE
Q 037555 79 STAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDN-LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWS 157 (298)
Q Consensus 79 ~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~ 157 (298)
..-|.+.+|| +|..+..+.+|...|.++.|-|... .+++|+.|++|.+|+-.. .+....+..|..-|.+
T Consensus 126 -erfg~~F~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP-------FKFk~s~r~HskFV~~ 195 (603)
T KOG0318|consen 126 -ERFGHVFLWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP-------FKFKSSFREHSKFVNC 195 (603)
T ss_pred -cceeEEEEec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC-------eeeeecccccccceee
Confidence 1234555555 6778889999999999999999665 799999999999998664 6777788899999999
Q ss_pred EEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccc
Q 037555 158 CSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTN 237 (298)
Q Consensus 158 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~ 237 (298)
+.|+|||.+|++++.||++.+||-.+++.+..+..-.+|++.|.+++|+|++ ..+++++.|.+++|||+.+....
T Consensus 196 VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs-----~~~~T~SaDkt~KIWdVs~~slv 270 (603)
T KOG0318|consen 196 VRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDS-----TQFLTVSADKTIKIWDVSTNSLV 270 (603)
T ss_pred EEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCC-----ceEEEecCCceEEEEEeeccceE
Confidence 9999999999999999999999999999998666566899999999999999 79999999999999999876543
Q ss_pred cccCCCCC----Ccceee-----------------------eeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCc
Q 037555 238 DVSTPAPS----TANIII-----------------------RFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNT 290 (298)
Q Consensus 238 ~~~~~~~~----~~~~~~-----------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~ 290 (298)
........ +..++. .+....+|...|+++..+|++ .+|++|+.||.
T Consensus 271 ~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-------~~i~SgsyDG~ 343 (603)
T KOG0318|consen 271 STWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDG-------KTIYSGSYDGH 343 (603)
T ss_pred EEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCC-------CEEEeeccCce
Confidence 32211110 000000 122256899999999999999 89999999999
Q ss_pred EEEeEec
Q 037555 291 VRVFQVN 297 (298)
Q Consensus 291 i~iw~~~ 297 (298)
|.-|+..
T Consensus 344 I~~W~~~ 350 (603)
T KOG0318|consen 344 INSWDSG 350 (603)
T ss_pred EEEEecC
Confidence 9999864
No 57
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=4.1e-31 Score=199.45 Aligned_cols=247 Identities=19% Similarity=0.348 Sum_probs=205.6
Q ss_pred cccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEE
Q 037555 4 ATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVA 72 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~ 72 (298)
-.++.++..+-.++..+.||.+.|.++.+. ...++++ ++|+ ++.++.+|...|..+.|+. .+++
T Consensus 217 nTikiWD~n~~~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mv 291 (499)
T KOG0281|consen 217 NTIKIWDKNSLECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMV 291 (499)
T ss_pred CceEEeccccHHHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEE
Confidence 456778888889999999999999999887 3355544 5664 5788899999999999974 5899
Q ss_pred eEeccCCCCceEEEEEEcCCcee---eeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEee
Q 037555 73 SSCKAQSTAAAEIWLWEVGSWKA---MGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQE 149 (298)
Q Consensus 73 ~~~~~~~~~d~~i~vw~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 149 (298)
++++ |..+.+||+.+... ...+.+|...|..+.|+ .+++++++.|.+|++|+..+ ...++.+.
T Consensus 292 tcSk-----DrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st-------~efvRtl~ 357 (499)
T KOG0281|consen 292 TCSK-----DRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTST-------CEFVRTLN 357 (499)
T ss_pred EecC-----CceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccc-------eeeehhhh
Confidence 9965 89999999976543 34577999999999994 56999999999999999998 78899999
Q ss_pred ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEE
Q 037555 150 AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELW 229 (298)
Q Consensus 150 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vw 229 (298)
+|...|.|+.+. ++++++|+.|.+|++||+..+.++. .+++|+.-|.++.|.. +.+++|..||+|+||
T Consensus 358 gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLR---vLeGHEeLvRciRFd~-------krIVSGaYDGkikvW 425 (499)
T KOG0281|consen 358 GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLR---VLEGHEELVRCIRFDN-------KRIVSGAYDGKIKVW 425 (499)
T ss_pred cccccceehhcc--CeEEEecCCCceEEEEeccccHHHH---HHhchHHhhhheeecC-------ceeeeccccceEEEE
Confidence 999999888775 8999999999999999999999988 8889999999999987 679999999999999
Q ss_pred EeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 230 SISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
|+.....+.. +...-++.. +..|.+.|..+.|.. ..+++++.|.+|-|||+.
T Consensus 426 dl~aaldpra----~~~~~Cl~~---lv~hsgRVFrLQFD~---------fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 426 DLQAALDPRA----PASTLCLRT---LVEHSGRVFRLQFDE---------FQIISSSHDDTILIWDFL 477 (499)
T ss_pred ecccccCCcc----cccchHHHh---hhhccceeEEEeecc---------eEEEeccCCCeEEEEEcC
Confidence 9987643321 011122222 445899999999954 789999999999999973
No 58
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=5.9e-29 Score=222.73 Aligned_cols=238 Identities=20% Similarity=0.259 Sum_probs=189.5
Q ss_pred cccCCCCCceeeeccCCCccccccc------CCCCc-------------eEEeccCCCceEEEEEcC-CCCEEEeEeccC
Q 037555 19 TLESVPDAVPAVFTEPPIEDQLAWH------TLWPE-------------SHKLYGHGNELFSLCCDH-QGKLVASSCKAQ 78 (298)
Q Consensus 19 ~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~-------------~~~~~~h~~~v~~~~~s~-~~~~l~~~~~~~ 78 (298)
.+..|.+.|.++.|. |.+..++++ ++|+. ...+ .+...|.+++|++ ++.+|++++
T Consensus 478 ~~~~~~~~V~~i~fs-~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~--- 552 (793)
T PLN00181 478 DLLNSSNLVCAIGFD-RDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSN--- 552 (793)
T ss_pred cccCCCCcEEEEEEC-CCCCEEEEEeCCCEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEe---
Confidence 455689999999999 566677665 46642 1122 2346799999987 478899995
Q ss_pred CCCceEEEEEEcCCceeeeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEE
Q 037555 79 STAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWS 157 (298)
Q Consensus 79 ~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~ 157 (298)
.|+.|++||+.+++.+..+.+|...|++++|+| ++.+|++|+.||.|++||++. ...+..+.. ...+.+
T Consensus 553 --~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~-------~~~~~~~~~-~~~v~~ 622 (793)
T PLN00181 553 --FEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ-------GVSIGTIKT-KANICC 622 (793)
T ss_pred --CCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC-------CcEEEEEec-CCCeEE
Confidence 599999999999999999999999999999997 788999999999999999986 344555554 367899
Q ss_pred EEEc-cCCCEEEEeeCCCeEEEEEccCCcc-eeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecc
Q 037555 158 CSWN-PFGHEFATGSRDKTVKIWAVENKSS-VKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNR 235 (298)
Q Consensus 158 ~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 235 (298)
+.|+ +++.+|++|+.||.|++||++.... .. .+.+|...|.++.|.+ + .+|++++.|+.|++||++...
T Consensus 623 v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~---~~~~h~~~V~~v~f~~-~-----~~lvs~s~D~~ikiWd~~~~~ 693 (793)
T PLN00181 623 VQFPSESGRSLAFGSADHKVYYYDLRNPKLPLC---TMIGHSKTVSYVRFVD-S-----STLVSSSTDNTLKLWDLSMSI 693 (793)
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEECCCCCccce---EecCCCCCEEEEEEeC-C-----CEEEEEECCCEEEEEeCCCCc
Confidence 9995 4789999999999999999987652 33 5567899999999974 4 689999999999999997531
Q ss_pred cccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 236 TNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
... ....+.. +.+|...+..++|+|++ .+|++|+.|+.|++|+..
T Consensus 694 ~~~-------~~~~l~~---~~gh~~~i~~v~~s~~~-------~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 694 SGI-------NETPLHS---FMGHTNVKNFVGLSVSD-------GYIATGSETNEVFVYHKA 738 (793)
T ss_pred ccc-------CCcceEE---EcCCCCCeeEEEEcCCC-------CEEEEEeCCCEEEEEECC
Confidence 100 0123333 55799999999999998 899999999999999853
No 59
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.3e-29 Score=186.61 Aligned_cols=232 Identities=20% Similarity=0.276 Sum_probs=180.2
Q ss_pred CceeeeccCCCcccccccCCC--CceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccccc
Q 037555 26 AVPAVFTEPPIEDQLAWHTLW--PESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHS 103 (298)
Q Consensus 26 ~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~ 103 (298)
.+.++...|+. +.......| .+...+..|.++|++++.+ ++++|+|+. |-+|+|||+.+...+..+-.|.
T Consensus 12 ~i~Gf~l~~~~-~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGss-----DetI~IYDm~k~~qlg~ll~Ha 83 (362)
T KOG0294|consen 12 VILGFKLDPEP-KGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSS-----DETIHIYDMRKRKQLGILLSHA 83 (362)
T ss_pred EEEEEEeccCc-cccccccceeeeccccccccccceeEEEec--ceeEeccCC-----CCcEEEEeccchhhhcceeccc
Confidence 34555555544 333333333 2356677899999999995 889999954 8899999999998888888899
Q ss_pred ccEEEEEEcCCCC--EEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEc
Q 037555 104 LTVTQIRFSHDDN--LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAV 181 (298)
Q Consensus 104 ~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~ 181 (298)
+.|+++.|.++-. .|++|+.||.|.+|+... +..+..+++|.+.|+.++.+|.+++.++.+.|+.+++||+
T Consensus 84 gsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~-------W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNL 156 (362)
T KOG0294|consen 84 GSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS-------WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNL 156 (362)
T ss_pred cceEEEEecCCcchhheeeecCCCcEEEEEcCC-------eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehh
Confidence 9999999998665 899999999999999987 8999999999999999999999999999999999999999
Q ss_pred cCCcceeeeeecCCCCCceEEEEEeeccc----------------------------------cCCccEEEEeecCCcEE
Q 037555 182 ENKSSVKQILALPPFNSSVTALSWVGLDR----------------------------------QKNHGFLAVGMESGVIE 227 (298)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------------------------~~~~~~l~~g~~dg~i~ 227 (298)
-.++....+ .+ ....+.+.|+|.|. ..++..|++|.+|+.|.
T Consensus 157 V~Gr~a~v~-~L---~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~ 232 (362)
T KOG0294|consen 157 VRGRVAFVL-NL---KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWIS 232 (362)
T ss_pred hcCccceee-cc---CCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEE
Confidence 887764422 22 22233466666654 11235777788888888
Q ss_pred EEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 228 LWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 228 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+||.... .+... +.+|..+|.++.+--+. ++.+|+|+|.||.|++||++
T Consensus 233 ~~D~ds~-------------~~~~~---~~AH~~RVK~i~~~~~~-----~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 233 LKDTDSD-------------TPLTE---FLAHENRVKDIASYTNP-----EHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred EeccCCC-------------cccee---eecchhheeeeEEEecC-----CceEEEEeccCceEEEEEcc
Confidence 8887654 33333 56899999999864332 22899999999999999986
No 60
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=2.6e-30 Score=192.37 Aligned_cols=213 Identities=20% Similarity=0.311 Sum_probs=178.1
Q ss_pred ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC------------c------eeeeccccccccEEEE
Q 037555 48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS------------W------KAMGRLQSHSLTVTQI 109 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~------------~------~~~~~~~~~~~~v~~~ 109 (298)
+-..+..|+.++.+.+|+|||.++|+|+ .|..|+|.|++. + -.++++..|...|+++
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGs-----aD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l 178 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGS-----ADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDL 178 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccC-----CcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccce
Confidence 4566788999999999999999999994 589999999862 1 2346677899999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceee
Q 037555 110 RFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQ 189 (298)
Q Consensus 110 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 189 (298)
.|+|...+|++++.|++|++||+..... .+..+. .....+|.++.|+|.|.+|++|..-..+++||+.+.++...
T Consensus 179 ~FHPre~ILiS~srD~tvKlFDfsK~sa----KrA~K~-~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvs 253 (430)
T KOG0640|consen 179 DFHPRETILISGSRDNTVKLFDFSKTSA----KRAFKV-FQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVS 253 (430)
T ss_pred eecchhheEEeccCCCeEEEEecccHHH----HHHHHH-hhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeee
Confidence 9999999999999999999999986432 111122 22356899999999999999999999999999999877654
Q ss_pred eeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCccc-ceEEEEEe
Q 037555 190 ILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHV-AAVNRMAW 268 (298)
Q Consensus 190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~ 268 (298)
-..-..|...|+++.+++.+ .+.++|+.||.|++||--++ +|+..+.. +|. ..|.+..|
T Consensus 254 anPd~qht~ai~~V~Ys~t~-----~lYvTaSkDG~IklwDGVS~-------------rCv~t~~~--AH~gsevcSa~F 313 (430)
T KOG0640|consen 254 ANPDDQHTGAITQVRYSSTG-----SLYVTASKDGAIKLWDGVSN-------------RCVRTIGN--AHGGSEVCSAVF 313 (430)
T ss_pred cCcccccccceeEEEecCCc-----cEEEEeccCCcEEeeccccH-------------HHHHHHHh--hcCCceeeeEEE
Confidence 43445688999999999999 79999999999999998877 66666653 454 57999999
Q ss_pred ecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 269 KTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 269 ~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
..++ .++++.|.|..+++|++.
T Consensus 314 tkn~-------kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 314 TKNG-------KYILSSGKDSTVKLWEIS 335 (430)
T ss_pred ccCC-------eEEeecCCcceeeeeeec
Confidence 9999 899999999999999974
No 61
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.3e-29 Score=203.80 Aligned_cols=215 Identities=20% Similarity=0.354 Sum_probs=181.2
Q ss_pred CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc-ccccEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555 55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS-HSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQ 133 (298)
Q Consensus 55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 133 (298)
+.+.|+++.|+++|.+||+| ..+|.|.|||..+.+.+..+.+ |...|.+++|. +..+.+|+.|+.|..+|++
T Consensus 216 ~~~~vtSv~ws~~G~~LavG-----~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR 288 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVG-----TSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVR 288 (484)
T ss_pred CCCceEEEEECCCCCEEEEe-----ecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEe
Confidence 38899999999999999999 5699999999999999999988 99999999997 6789999999999999999
Q ss_pred cCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCC
Q 037555 134 RTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKN 213 (298)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (298)
.... ....+.+|...|..++|++++++||+|+.|+.+.|||.....++. .+..|...|..++|+|...
T Consensus 289 ~~~~------~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~---~~~~H~aAVKA~awcP~q~--- 356 (484)
T KOG0305|consen 289 ISQH------VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF---TFTEHTAAVKALAWCPWQS--- 356 (484)
T ss_pred cchh------hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccE---EEeccceeeeEeeeCCCcc---
Confidence 8532 222478899999999999999999999999999999997777666 6778999999999999876
Q ss_pred ccEEEEee--cCCcEEEEEeeecccccccCCCCC---------------------------CcceeeeeccCCcccceEE
Q 037555 214 HGFLAVGM--ESGVIELWSISVNRTNDVSTPAPS---------------------------TANIIIRFDPFACHVAAVN 264 (298)
Q Consensus 214 ~~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~v~ 264 (298)
.+||+|+ .|+.|++||..++..........+ ....+..+..+.+|...|.
T Consensus 357 -~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl 435 (484)
T KOG0305|consen 357 -GLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVL 435 (484)
T ss_pred -CceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeE
Confidence 7999976 589999999987754332221111 0111223344779999999
Q ss_pred EEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 265 RMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 265 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
.++++||+ ..+++++.|.++++|++
T Consensus 436 ~la~SPdg-------~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 436 YLALSPDG-------ETIVTGAADETLRFWNL 460 (484)
T ss_pred EEEECCCC-------CEEEEecccCcEEeccc
Confidence 99999999 89999999999999986
No 62
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=8.3e-30 Score=189.67 Aligned_cols=255 Identities=19% Similarity=0.244 Sum_probs=204.0
Q ss_pred cccccccCCCCCceeeeccCCCcccccccC-----------------------------CCCceEEeccCCCceEEEEEc
Q 037555 15 DGLDTLESVPDAVPAVFTEPPIEDQLAWHT-----------------------------LWPESHKLYGHGNELFSLCCD 65 (298)
Q Consensus 15 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~h~~~v~~~~~s 65 (298)
-+...+..|..++.+..|+ +++..++++. .-|.+++|..|.++|+++.|+
T Consensus 103 yEt~ylt~HK~~cR~aafs-~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFS-PDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFH 181 (430)
T ss_pred cceEEEeecccceeeeeeC-CCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeec
Confidence 3456678899999999999 6777766651 114689999999999999999
Q ss_pred CCCCEEEeEeccCCCCceEEEEEEcCCceee---eccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccce
Q 037555 66 HQGKLVASSCKAQSTAAAEIWLWEVGSWKAM---GRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDY 142 (298)
Q Consensus 66 ~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 142 (298)
|....|+++++ |++|+++|+...... +.|+ ...+|.++.|+|.|.++++|....++++||+.+.
T Consensus 182 Pre~ILiS~sr-----D~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~------- 248 (430)
T KOG0640|consen 182 PRETILISGSR-----DNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY------- 248 (430)
T ss_pred chhheEEeccC-----CCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCceEEEecCCCceeEEeccce-------
Confidence 99999999965 999999999754332 2333 5678999999999999999999999999999983
Q ss_pred eeeE---EeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEE
Q 037555 143 QLIA---RQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAV 219 (298)
Q Consensus 143 ~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~ 219 (298)
++.. .-..|.+.|+++.+++.+++.++++.||.|++||--+.+++..+..-+ ....|.+..|..++ .++++
T Consensus 249 QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH-~gsevcSa~Ftkn~-----kyiLs 322 (430)
T KOG0640|consen 249 QCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAH-GGSEVCSAVFTKNG-----KYILS 322 (430)
T ss_pred eEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhc-CCceeeeEEEccCC-----eEEee
Confidence 3222 224588899999999999999999999999999999888887443332 34679999999998 89999
Q ss_pred eecCCcEEEEEeeecccccccCCCCCCccee------------------------eeec---------cCCcccceEEEE
Q 037555 220 GMESGVIELWSISVNRTNDVSTPAPSTANII------------------------IRFD---------PFACHVAAVNRM 266 (298)
Q Consensus 220 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------------------------~~~~---------~~~~~~~~v~~~ 266 (298)
.+.|..+++|.+.+++....+++........ ..+. -..+|.+.+..+
T Consensus 323 SG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i 402 (430)
T KOG0640|consen 323 SGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWI 402 (430)
T ss_pred cCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEE
Confidence 9999999999999988776666543211100 0000 024799999999
Q ss_pred EeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 267 AWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 267 ~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
.-+|.+ .-++||+.|-.+|+|--
T Consensus 403 ~HSP~~-------p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 403 VHSPVE-------PAFMTCSDDFRARFWYR 425 (430)
T ss_pred EeCCCC-------Cceeeecccceeeeeee
Confidence 999999 79999999999999953
No 63
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.1e-29 Score=211.12 Aligned_cols=209 Identities=18% Similarity=0.306 Sum_probs=166.4
Q ss_pred EEec-cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC------------------------------------
Q 037555 50 HKLY-GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS------------------------------------ 92 (298)
Q Consensus 50 ~~~~-~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~------------------------------------ 92 (298)
+.+. .|.+.|.++.||+||++||+| ++|+.|+||.+..
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsa-----GeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASA-----GEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISS 334 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeec-----CCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccc
Confidence 4445 899999999999999999999 5699999998743
Q ss_pred ------------------------ceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEe
Q 037555 93 ------------------------WKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQ 148 (298)
Q Consensus 93 ------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 148 (298)
.+++..|.+|.+.|.++.|+.+ ++|++++.|.+|++|++.. ..+++.+
T Consensus 335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~-------~~CL~~F 406 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGR-------KECLKVF 406 (712)
T ss_pred cccccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCC-------cceeeEE
Confidence 1234456789999999999965 5999999999999999986 4556554
Q ss_pred eccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEE
Q 037555 149 EAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIE 227 (298)
Q Consensus 149 ~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~ 227 (298)
.|...|+|++|+| |.++|++|+-||+||||++...+... ......-|++++|.|+| +..+.|+.+|..+
T Consensus 407 -~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~----W~Dl~~lITAvcy~PdG-----k~avIGt~~G~C~ 476 (712)
T KOG0283|consen 407 -SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVD----WNDLRDLITAVCYSPDG-----KGAVIGTFNGYCR 476 (712)
T ss_pred -ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEe----ehhhhhhheeEEeccCC-----ceEEEEEeccEEE
Confidence 5999999999999 88999999999999999998766543 33456889999999999 8999999999999
Q ss_pred EEEeeecccccccCCCCCCcceeeeec-cCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 228 LWSISVNRTNDVSTPAPSTANIIIRFD-PFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 228 vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
+|+....+.... ..+..-. .-..|. .|+.+.|.|..+ ..++..+.|..|||+|+
T Consensus 477 fY~t~~lk~~~~--------~~I~~~~~Kk~~~~-rITG~Q~~p~~~------~~vLVTSnDSrIRI~d~ 531 (712)
T KOG0283|consen 477 FYDTEGLKLVSD--------FHIRLHNKKKKQGK-RITGLQFFPGDP------DEVLVTSNDSRIRIYDG 531 (712)
T ss_pred EEEccCCeEEEe--------eeEeeccCccccCc-eeeeeEecCCCC------CeEEEecCCCceEEEec
Confidence 999986532211 1110000 011133 899999998763 46777788999999997
No 64
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.7e-28 Score=219.82 Aligned_cols=245 Identities=12% Similarity=0.246 Sum_probs=188.4
Q ss_pred CCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcC-CCCEEEeEeccCCCCceEEEEEEcC
Q 037555 24 PDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDH-QGKLVASSCKAQSTAAAEIWLWEVG 91 (298)
Q Consensus 24 ~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~ 91 (298)
...+..+.+.++....++++ ++|+ .+..+.+|.+.|++++|+| ++.+|++|+ .|+.|++||+.
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs-----~Dg~v~iWd~~ 606 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGS-----DDGSVKLWSIN 606 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEc-----CCCEEEEEECC
Confidence 34677788886666666655 4664 4677889999999999997 788999995 59999999999
Q ss_pred CceeeeccccccccEEEEEEc-CCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEe
Q 037555 92 SWKAMGRLQSHSLTVTQIRFS-HDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATG 170 (298)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 170 (298)
+++.+..+..+ ..|.++.|+ +++.+|++|+.||.|++||++... .....+.+|...|.++.|. ++.+|+++
T Consensus 607 ~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~------~~~~~~~~h~~~V~~v~f~-~~~~lvs~ 678 (793)
T PLN00181 607 QGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK------LPLCTMIGHSKTVSYVRFV-DSSTLVSS 678 (793)
T ss_pred CCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC------ccceEecCCCCCEEEEEEe-CCCEEEEE
Confidence 88888777744 678999995 478999999999999999998632 2345667899999999997 67899999
Q ss_pred eCCCeEEEEEccCCc---ceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCc
Q 037555 171 SRDKTVKIWAVENKS---SVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTA 247 (298)
Q Consensus 171 ~~dg~i~~wd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~ 247 (298)
+.|+.|++||++... ....+..+.+|...+..++|+|++ .+|++|+.|+.|++|+...............
T Consensus 679 s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~-----~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~-- 751 (793)
T PLN00181 679 STDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSD-----GYIATGSETNEVFVYHKAFPMPVLSYKFKTI-- 751 (793)
T ss_pred ECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCC-----CEEEEEeCCCEEEEEECCCCCceEEEecccC--
Confidence 999999999997532 112233677888999999999988 7999999999999999764421110000000
Q ss_pred ceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 248 NIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 248 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
.....+. ...|...|.+++|+|++ ..|++++.||.|+||++
T Consensus 752 ~~~~~~~-~~~~~~~V~~v~ws~~~-------~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 752 DPVSGLE-VDDASQFISSVCWRGQS-------STLVAANSTGNIKILEM 792 (793)
T ss_pred Ccccccc-cCCCCcEEEEEEEcCCC-------CeEEEecCCCcEEEEec
Confidence 0000011 23466789999999999 89999999999999996
No 65
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=1.3e-28 Score=186.67 Aligned_cols=168 Identities=22% Similarity=0.363 Sum_probs=150.7
Q ss_pred ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeE
Q 037555 48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF 127 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 127 (298)
-+.+|..|+++|.+++.+|+.+++++| +.|..-++|++.+++....+.+|+..|+++.|+.+|.+|++|+.+|.|
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTG-----GgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v 130 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATG-----GGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKV 130 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEec-----CCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccE
Confidence 467889999999999999999999999 458899999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555 128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG 207 (298)
Q Consensus 128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (298)
+||+..++ .....+...-..+.-+.|+|.+..|++|+.||.+-+|.+.+....+ .+.+|+.++++-.|.|
T Consensus 131 ~v~~~stg-------~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~k---v~~Gh~~~ct~G~f~p 200 (399)
T KOG0296|consen 131 LVFKVSTG-------GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCK---VMSGHNSPCTCGEFIP 200 (399)
T ss_pred EEEEcccC-------ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceee---EecCCCCCcccccccC
Confidence 99999873 3344444455678889999999999999999999999999865555 7789999999999999
Q ss_pred ccccCCccEEEEeecCCcEEEEEeeecc
Q 037555 208 LDRQKNHGFLAVGMESGVIELWSISVNR 235 (298)
Q Consensus 208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 235 (298)
+| +.++++..||+|++|+..++.
T Consensus 201 dG-----Kr~~tgy~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 201 DG-----KRILTGYDDGTIIVWNPKTGQ 223 (399)
T ss_pred CC-----ceEEEEecCceEEEEecCCCc
Confidence 99 899999999999999998764
No 66
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=2.2e-29 Score=195.75 Aligned_cols=215 Identities=17% Similarity=0.336 Sum_probs=176.4
Q ss_pred EeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce----------eeeccccccccEEEEEEcCCC-CEEE
Q 037555 51 KLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK----------AMGRLQSHSLTVTQIRFSHDD-NLLL 119 (298)
Q Consensus 51 ~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~----------~~~~~~~~~~~v~~~~~~~~~-~~l~ 119 (298)
....|.+.|+.+.+.|....++++. ...+.|.|||..+.. +-..+.+|...-+++.|++.. -.++
T Consensus 119 ~~i~h~gEVnRaRymPQnp~iVAt~----t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Ll 194 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQNPNIVATK----TSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLL 194 (422)
T ss_pred EeccCCccchhhhhCCCCCcEEEec----CCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEe
Confidence 3346999999999999777666543 458899999985421 122577898888899999954 4899
Q ss_pred EEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccC--CcceeeeeecCCC
Q 037555 120 SVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVEN--KSSVKQILALPPF 196 (298)
Q Consensus 120 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~--~~~~~~~~~~~~~ 196 (298)
+++.|+.|++||+...........+...+.+|...|..++|++ +...|++++.|+.+.|||+|+ .+... ..++|
T Consensus 195 s~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~---~~~ah 271 (422)
T KOG0264|consen 195 SGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSH---SVKAH 271 (422)
T ss_pred eccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcc---ccccc
Confidence 9999999999999876653333556778889999999999999 557899999999999999995 33333 66789
Q ss_pred CCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCC
Q 037555 197 NSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKN 276 (298)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 276 (298)
.+.+.|++|+|.+. .+||+|+.|++|++||+|+-+ . .+..+.+|...|..+.|+|+..
T Consensus 272 ~~~vn~~~fnp~~~----~ilAT~S~D~tV~LwDlRnL~------------~---~lh~~e~H~dev~~V~WSPh~e--- 329 (422)
T KOG0264|consen 272 SAEVNCVAFNPFNE----FILATGSADKTVALWDLRNLN------------K---PLHTFEGHEDEVFQVEWSPHNE--- 329 (422)
T ss_pred CCceeEEEeCCCCC----ceEEeccCCCcEEEeechhcc------------c---CceeccCCCcceEEEEeCCCCC---
Confidence 99999999999874 899999999999999999653 2 3444778999999999999875
Q ss_pred CcceEEEeeeCCCcEEEeEec
Q 037555 277 SRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 277 ~~~~~l~s~~~d~~i~iw~~~ 297 (298)
..|++++.|+.+.+||+.
T Consensus 330 ---tvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 330 ---TVLASSGTDRRLNVWDLS 347 (422)
T ss_pred ---ceeEecccCCcEEEEecc
Confidence 899999999999999985
No 67
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3.4e-29 Score=208.32 Aligned_cols=209 Identities=16% Similarity=0.279 Sum_probs=166.8
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcC-CCCEEEEEeCCCeE
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQF 127 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 127 (298)
+..|.||.+.|..+.||.+ .+|++++ .|.+|++|++...+++..|. |...|+|++|+| |.++|++|+-||.+
T Consensus 362 ~~ef~GHt~DILDlSWSKn-~fLLSSS-----MDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~Kv 434 (712)
T KOG0283|consen 362 FCEFKGHTADILDLSWSKN-NFLLSSS-----MDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKV 434 (712)
T ss_pred hhhhhccchhheecccccC-CeeEecc-----ccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccce
Confidence 4556899999999999975 4777774 59999999999999999998 999999999999 88999999999999
Q ss_pred EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC-----CCCCceEE
Q 037555 128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP-----PFNSSVTA 202 (298)
Q Consensus 128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-----~~~~~v~~ 202 (298)
+||++.. .+.+ ....-..-|++++|.|+|+..++|+.+|.+++|+.+..+......... .....|+.
T Consensus 435 RiWsI~d-------~~Vv-~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG 506 (712)
T KOG0283|consen 435 RLWSISD-------KKVV-DWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITG 506 (712)
T ss_pred EEeecCc-------CeeE-eehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeee
Confidence 9999986 3333 333445889999999999999999999999999998876554321111 11237999
Q ss_pred EEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEE
Q 037555 203 LSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQL 282 (298)
Q Consensus 203 ~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 282 (298)
+.|.|..+ ..+++.+.|..|+|||.+.. ..+..+..+.. ...-....|+.|| .+|
T Consensus 507 ~Q~~p~~~----~~vLVTSnDSrIRI~d~~~~-------------~lv~KfKG~~n-~~SQ~~Asfs~Dg-------k~I 561 (712)
T KOG0283|consen 507 LQFFPGDP----DEVLVTSNDSRIRIYDGRDK-------------DLVHKFKGFRN-TSSQISASFSSDG-------KHI 561 (712)
T ss_pred eEecCCCC----CeEEEecCCCceEEEeccch-------------hhhhhhccccc-CCcceeeeEccCC-------CEE
Confidence 99999875 56777788999999999765 44444332221 2234567899999 899
Q ss_pred EeeeCCCcEEEeEec
Q 037555 283 ASCGADNTVRVFQVN 297 (298)
Q Consensus 283 ~s~~~d~~i~iw~~~ 297 (298)
+++++|..|++|++.
T Consensus 562 Vs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 562 VSASEDSWVYIWKND 576 (712)
T ss_pred EEeecCceEEEEeCC
Confidence 999999999999963
No 68
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.97 E-value=1.8e-28 Score=178.79 Aligned_cols=207 Identities=17% Similarity=0.279 Sum_probs=178.0
Q ss_pred EeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 037555 51 KLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVF 130 (298)
Q Consensus 51 ~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 130 (298)
.+.||..+++-+.++.+|.+|.++++ |....||-..+|+.+.++.+|.+.|.++..+.+.+.+++|+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaK-----D~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAK-----DSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecC-----CCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEE
Confidence 46799999999999999999999965 8899999998899999999999999999999999999999999999999
Q ss_pred EeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-----CCeEEEEEccCCc----ceeeeeecCCCCCceE
Q 037555 131 AIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-----DKTVKIWAVENKS----SVKQILALPPFNSSVT 201 (298)
Q Consensus 131 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~~wd~~~~~----~~~~~~~~~~~~~~v~ 201 (298)
|+.+ ++.+..++ ...+|..+.|++++++++.... .+.|.++|++... ...++..++.+.+.++
T Consensus 80 Dv~t-------Gk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit 151 (327)
T KOG0643|consen 80 DVET-------GKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKIT 151 (327)
T ss_pred EcCC-------CcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcccee
Confidence 9998 55666665 4688999999999998888764 4679999998433 1112335666778999
Q ss_pred EEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceE
Q 037555 202 ALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQ 281 (298)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 281 (298)
.+-|.|.+ ++|++|.+||.|.+||++++. ..+.. -..|...|++|.++++. .+
T Consensus 152 ~a~Wg~l~-----~~ii~Ghe~G~is~~da~~g~------------~~v~s---~~~h~~~Ind~q~s~d~-------T~ 204 (327)
T KOG0643|consen 152 SALWGPLG-----ETIIAGHEDGSISIYDARTGK------------ELVDS---DEEHSSKINDLQFSRDR-------TY 204 (327)
T ss_pred eeeecccC-----CEEEEecCCCcEEEEEcccCc------------eeeec---hhhhccccccccccCCc-------ce
Confidence 99999999 899999999999999999873 22222 34588999999999999 89
Q ss_pred EEeeeCCCcEEEeEec
Q 037555 282 LASCGADNTVRVFQVN 297 (298)
Q Consensus 282 l~s~~~d~~i~iw~~~ 297 (298)
++|++.|.+-++||+.
T Consensus 205 FiT~s~Dttakl~D~~ 220 (327)
T KOG0643|consen 205 FITGSKDTTAKLVDVR 220 (327)
T ss_pred EEecccCccceeeecc
Confidence 9999999999999975
No 69
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.4e-28 Score=202.27 Aligned_cols=247 Identities=17% Similarity=0.225 Sum_probs=207.0
Q ss_pred ccccceeeeecCcccccccCCCCCceeeeccCCCcccccccCC------C-----CceEEeccCCCceEEEEEcCCCCEE
Q 037555 3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHTL------W-----PESHKLYGHGNELFSLCCDHQGKLV 71 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------~-----~~~~~~~~h~~~v~~~~~s~~~~~l 71 (298)
+..++.|+.++.+++.++..- -+.+..|- |....+..+.. + ..+.+...|.+.|.+++.+||++.+
T Consensus 393 ~~SikiWn~~t~kciRTi~~~--y~l~~~Fv-pgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~ 469 (888)
T KOG0306|consen 393 GESIKIWNRDTLKCIRTITCG--YILASKFV-PGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGF 469 (888)
T ss_pred CCcEEEEEccCcceeEEeccc--cEEEEEec-CCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCce
Confidence 367888999999999999774 55666666 44444444421 1 1355667999999999999999999
Q ss_pred EeEeccCCCCceEEEEEEcCCce-------e-e-----eccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCC
Q 037555 72 ASSCKAQSTAAAEIWLWEVGSWK-------A-M-----GRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTG 138 (298)
Q Consensus 72 ~~~~~~~~~~d~~i~vw~~~~~~-------~-~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 138 (298)
++|+ .|.+|++||..--. . + .++. -+..|.|+.++||+++|+++--|.++++|-+++
T Consensus 470 vT~s-----aDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt---- 539 (888)
T KOG0306|consen 470 VTGS-----ADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT---- 539 (888)
T ss_pred EEec-----CCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEEEecc----
Confidence 9995 59999999974211 1 1 1122 467899999999999999999999999999998
Q ss_pred ccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEE
Q 037555 139 EIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLA 218 (298)
Q Consensus 139 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~ 218 (298)
.+....+-+|.-||.++..+||+..+++|+.|..|++|-+.-+.+-+ .+.+|+..|.++.|.|.. ..++
T Consensus 540 ---lKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHK---S~fAHdDSvm~V~F~P~~-----~~FF 608 (888)
T KOG0306|consen 540 ---LKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHK---SFFAHDDSVMSVQFLPKT-----HLFF 608 (888)
T ss_pred ---eeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhh---hhhcccCceeEEEEcccc-----eeEE
Confidence 77788899999999999999999999999999999999999998887 777899999999999987 7999
Q ss_pred EeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 219 VGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 219 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
+++.|+.|+-||-..- ..+.. +.+|...|++++.+|+| .+++++|.|.+||+|.-
T Consensus 609 t~gKD~kvKqWDg~kF-------------e~iq~---L~~H~~ev~cLav~~~G-------~~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 609 TCGKDGKVKQWDGEKF-------------EEIQK---LDGHHSEVWCLAVSPNG-------SFVVSSSHDKSIRLWER 663 (888)
T ss_pred EecCcceEEeechhhh-------------hhhee---eccchheeeeeEEcCCC-------CeEEeccCCceeEeeec
Confidence 9999999999998765 33333 66899999999999999 89999999999999974
No 70
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=2.7e-28 Score=207.97 Aligned_cols=216 Identities=22% Similarity=0.432 Sum_probs=176.5
Q ss_pred ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC------------------ceeeeccccccccEEEE
Q 037555 48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS------------------WKAMGRLQSHSLTVTQI 109 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~------------------~~~~~~~~~~~~~v~~~ 109 (298)
.+.++..|.+.|+|+.|+|||++||+| ++|+.|.||+... .+.+..+.+|...|..+
T Consensus 61 ~l~~m~~h~~sv~CVR~S~dG~~lAsG-----SDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv 135 (942)
T KOG0973|consen 61 HLCTMDDHDGSVNCVRFSPDGSYLASG-----SDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDV 135 (942)
T ss_pred hheeeccccCceeEEEECCCCCeEeec-----cCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCcccee
Confidence 356677899999999999999999999 5699999999762 23566788999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCccee-
Q 037555 110 RFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVK- 188 (298)
Q Consensus 110 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~- 188 (298)
+|+|++.++++++.|++|.+|+..+ ...+..+.+|.+.|..+.|.|-|++||+-+.|++|++|++.+.....
T Consensus 136 ~Wsp~~~~lvS~s~DnsViiwn~~t-------F~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~ 208 (942)
T KOG0973|consen 136 NWSPDDSLLVSVSLDNSVIIWNAKT-------FELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKS 208 (942)
T ss_pred ccCCCccEEEEecccceEEEEcccc-------ceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEe
Confidence 9999999999999999999999998 77889999999999999999999999999999999999965421111
Q ss_pred ------------------------------------------------eeeecCCCCCceEEEEEeeccccCC-------
Q 037555 189 ------------------------------------------------QILALPPFNSSVTALSWVGLDRQKN------- 213 (298)
Q Consensus 189 ------------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~------- 213 (298)
.-..+.+|..++.+++|+|.-...+
T Consensus 209 It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~ 288 (942)
T KOG0973|consen 209 ITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTST 288 (942)
T ss_pred eccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCcc
Confidence 1123457778888888888432111
Q ss_pred -c----cEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCC
Q 037555 214 -H----GFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD 288 (298)
Q Consensus 214 -~----~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d 288 (298)
. ..+++|+.|+.|.||..... +++..+.. -....|.+|+|+||| ..|+.||.|
T Consensus 289 ~~~~~y~i~AvgSqDrSlSVW~T~~~-------------RPl~vi~~--lf~~SI~DmsWspdG-------~~LfacS~D 346 (942)
T KOG0973|consen 289 QPNCYYCIAAVGSQDRSLSVWNTALP-------------RPLFVIHN--LFNKSIVDMSWSPDG-------FSLFACSLD 346 (942)
T ss_pred CCCcceEEEEEecCCccEEEEecCCC-------------Cchhhhhh--hhcCceeeeeEcCCC-------CeEEEEecC
Confidence 1 17889999999999998654 34333322 245789999999999 899999999
Q ss_pred CcEEEeEec
Q 037555 289 NTVRVFQVN 297 (298)
Q Consensus 289 ~~i~iw~~~ 297 (298)
|+|.+..++
T Consensus 347 GtV~~i~Fe 355 (942)
T KOG0973|consen 347 GTVALIHFE 355 (942)
T ss_pred CeEEEEEcc
Confidence 999998764
No 71
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=5.9e-28 Score=187.03 Aligned_cols=250 Identities=17% Similarity=0.225 Sum_probs=202.1
Q ss_pred cceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeE
Q 037555 6 RETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASS 74 (298)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~ 74 (298)
.-.++.+++..+..++||...|..+.+.+. .+.+.++ ++|. +......|..+|+.+..+|.|.+|+++
T Consensus 243 av~~d~~s~q~l~~~~Gh~kki~~v~~~~~-~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsA 321 (506)
T KOG0289|consen 243 AVLFDKPSNQILATLKGHTKKITSVKFHKD-LDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSA 321 (506)
T ss_pred eEEEecchhhhhhhccCcceEEEEEEeccc-hhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEe
Confidence 346778889999999999999999999844 3333333 3452 456677899999999999999999999
Q ss_pred eccCCCCceEEEEEEcCCceeeecccc--ccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccC
Q 037555 75 CKAQSTAAAEIWLWEVGSWKAMGRLQS--HSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHK 152 (298)
Q Consensus 75 ~~~~~~~d~~i~vw~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 152 (298)
+ .|+...+.|++++..+..... ..-.+++.+|+|||.+|.+|..||.++|||+.. ...+..+.+|.
T Consensus 322 s-----~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks-------~~~~a~Fpght 389 (506)
T KOG0289|consen 322 S-----NDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS-------QTNVAKFPGHT 389 (506)
T ss_pred c-----CCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC-------ccccccCCCCC
Confidence 4 599999999999988766553 234589999999999999999999999999987 44677889999
Q ss_pred CceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEee
Q 037555 153 RIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSIS 232 (298)
Q Consensus 153 ~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~ 232 (298)
++|..++|+.+|.+|+++++|+.|++||+|..+....+ .+. ....+.++.|.+.| .+|+.++.|=.|++++-.
T Consensus 390 ~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~-~l~-~~~~v~s~~fD~SG-----t~L~~~g~~l~Vy~~~k~ 462 (506)
T KOG0289|consen 390 GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTI-QLD-EKKEVNSLSFDQSG-----TYLGIAGSDLQVYICKKK 462 (506)
T ss_pred CceeEEEeccCceEEEEEecCCeEEEEEehhhccccee-ecc-ccccceeEEEcCCC-----CeEEeecceeEEEEEecc
Confidence 99999999999999999999999999999988766644 233 23379999999999 799998766555555433
Q ss_pred ecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 233 VNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
+. +|..+.. +..|.+..+.+.|.... .+++++|.|..++++.+
T Consensus 463 ~k-----------~W~~~~~---~~~~sg~st~v~Fg~~a-------q~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 463 TK-----------SWTEIKE---LADHSGLSTGVRFGEHA-------QYLASTSMDAILRLYAL 505 (506)
T ss_pred cc-----------cceeeeh---hhhcccccceeeecccc-------eEEeeccchhheEEeec
Confidence 32 2233333 45588889999999888 89999999999999865
No 72
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=6.3e-29 Score=186.29 Aligned_cols=236 Identities=16% Similarity=0.263 Sum_probs=200.9
Q ss_pred CCCCCceeeeccCCCcccccccC------CCCc-------------eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCc
Q 037555 22 SVPDAVPAVFTEPPIEDQLAWHT------LWPE-------------SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAA 82 (298)
Q Consensus 22 ~~~~~v~~~~~~~~~~~~~~~~~------~~~~-------------~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d 82 (298)
+....+.+..|+ |+++.++++. .|+. ...|.-+.++|.|+.|+.|...||+| ..|
T Consensus 211 g~KSh~EcA~FS-PDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsG-----sqD 284 (508)
T KOG0275|consen 211 GQKSHVECARFS-PDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASG-----SQD 284 (508)
T ss_pred ccccchhheeeC-CCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhcc-----CcC
Confidence 444567788888 7788888773 4531 12344578999999999999999999 459
Q ss_pred eEEEEEEcCCceeeeccc-cccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEc
Q 037555 83 AEIWLWEVGSWKAMGRLQ-SHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN 161 (298)
Q Consensus 83 ~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 161 (298)
|.|++|.+++|++++.|. .|+..|+++.|+.|+..+++++.|.++++.-+.. ++.++.+++|...|+...|.
T Consensus 285 GkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS-------GK~LKEfrGHsSyvn~a~ft 357 (508)
T KOG0275|consen 285 GKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS-------GKCLKEFRGHSSYVNEATFT 357 (508)
T ss_pred CcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc-------chhHHHhcCccccccceEEc
Confidence 999999999999999997 8999999999999999999999999999999987 77889999999999999999
Q ss_pred cCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccC
Q 037555 162 PFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVST 241 (298)
Q Consensus 162 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 241 (298)
++|..+++++.||+|++|+.++.+++..+... +...+|.++...|.++ ..++++....+|+|.++..
T Consensus 358 ~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~-~~d~~vnsv~~~PKnp----eh~iVCNrsntv~imn~qG-------- 424 (508)
T KOG0275|consen 358 DDGHHIISASSDGTVKVWHGKTTECLSTFKPL-GTDYPVNSVILLPKNP----EHFIVCNRSNTVYIMNMQG-------- 424 (508)
T ss_pred CCCCeEEEecCCccEEEecCcchhhhhhccCC-CCcccceeEEEcCCCC----ceEEEEcCCCeEEEEeccc--------
Confidence 99999999999999999999999998854333 3567899999999876 7899999999999999864
Q ss_pred CCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 242 PAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
+.++.+..-....+...+.+.+|.| .++...++|+.++.|.+
T Consensus 425 ------QvVrsfsSGkREgGdFi~~~lSpkG-------ewiYcigED~vlYCF~~ 466 (508)
T KOG0275|consen 425 ------QVVRSFSSGKREGGDFINAILSPKG-------EWIYCIGEDGVLYCFSV 466 (508)
T ss_pred ------eEEeeeccCCccCCceEEEEecCCC-------cEEEEEccCcEEEEEEe
Confidence 5566665444455677788899999 89999999999998875
No 73
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=5.5e-28 Score=202.42 Aligned_cols=242 Identities=21% Similarity=0.317 Sum_probs=207.1
Q ss_pred cccceeeeecCccccc-ccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEE
Q 037555 4 ATRETVERHGNDGLDT-LESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLV 71 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l 71 (298)
..+..++..++..+.. +.+|.+.|.++.+.. .+..+.++ ++|+ +...+.+|.+.|.++...+ ..+
T Consensus 228 ~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~ 304 (537)
T KOG0274|consen 228 STLHLWDLNNGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLL 304 (537)
T ss_pred ceeEEeecccceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceE
Confidence 4456788899999888 999999999999873 55555555 5675 5889999999999999854 467
Q ss_pred EeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc
Q 037555 72 ASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH 151 (298)
Q Consensus 72 ~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 151 (298)
++|+ .|.+|++|+++++..+..+.+|..+|.++..+ +.++++|+.|++|++||+.+ .+++..+.+|
T Consensus 305 ~sgs-----~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~-------~~cl~sl~gH 370 (537)
T KOG0274|consen 305 VSGS-----RDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRT-------GKCLKSLSGH 370 (537)
T ss_pred eecc-----CCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhh-------ceeeeeecCC
Confidence 7764 49999999999999999999999999999997 78999999999999999997 8899999999
Q ss_pred CCceEEEEEccCCCEEEEeeCCCeEEEEEccCC-cceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEE
Q 037555 152 KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENK-SSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWS 230 (298)
Q Consensus 152 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd 230 (298)
...|.++.+.+. +.+++|+.|+.|++||+++. +++. .+..|..-+..+.+.. ++|++++.|+.|++||
T Consensus 371 ~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~---tl~~h~~~v~~l~~~~-------~~Lvs~~aD~~Ik~WD 439 (537)
T KOG0274|consen 371 TGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIH---TLQGHTSLVSSLLLRD-------NFLVSSSADGTIKLWD 439 (537)
T ss_pred cceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhh---hhcCCccccccccccc-------ceeEeccccccEEEee
Confidence 999999988755 89999999999999999998 7766 8888888887776655 6899999999999999
Q ss_pred eeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 231 ISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
..++ ++...+... |...|..+++. . ..+++++.|+++++||++
T Consensus 440 ~~~~-------------~~~~~~~~~--~~~~v~~l~~~--~-------~~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 440 AEEG-------------ECLRTLEGR--HVGGVSALALG--K-------EEILCSSDDGSVKLWDLR 482 (537)
T ss_pred cccC-------------ceeeeeccC--CcccEEEeecC--c-------ceEEEEecCCeeEEEecc
Confidence 9988 666665421 67888888887 2 588999999999999986
No 74
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.1e-27 Score=187.02 Aligned_cols=219 Identities=19% Similarity=0.252 Sum_probs=179.3
Q ss_pred CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEecc
Q 037555 55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQR 134 (298)
Q Consensus 55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 134 (298)
-.++|.|++-+|+|.+|+.| +..+.|++|.+.+|..+..+.+|=..|+++.|+.||.+|++|+.||.|.+|.+..
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag-----~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAG-----TISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD 154 (476)
T ss_pred cccceeeeecCCCceEEEee-----cccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe
Confidence 45789999999999999998 5589999999999999999999999999999999999999999999999998754
Q ss_pred CCCC--ccceeeeEEeeccCCceEEEEEccC--CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555 135 TGTG--EIDYQLIARQEAHKRIIWSCSWNPF--GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR 210 (298)
Q Consensus 135 ~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (298)
--.. .....+...+..|.-+|+.+...+. ..++++++.|.++++||+..+..+. ++. .+..+.+++..|.+
T Consensus 155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl---ti~-fp~si~av~lDpae- 229 (476)
T KOG0646|consen 155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL---TIT-FPSSIKAVALDPAE- 229 (476)
T ss_pred ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeE---EEe-cCCcceeEEEcccc-
Confidence 2111 1125677888899999999988874 4689999999999999999998776 433 67889999999998
Q ss_pred cCCccEEEEeecCCcEEEEEeeecccccc--c-CCCCCCcceeeeeccCCcccc--eEEEEEeecCCCCCCCcceEEEee
Q 037555 211 QKNHGFLAVGMESGVIELWSISVNRTNDV--S-TPAPSTANIIIRFDPFACHVA--AVNRMAWKTHEKPKNSRTMQLASC 285 (298)
Q Consensus 211 ~~~~~~l~~g~~dg~i~vwd~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~l~s~ 285 (298)
..+..|+.+|.|.+.++........ . .... .....+..+.+|.. +|++++.+-|+ .+|++|
T Consensus 230 ----~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~---~~~t~~~~~~Gh~~~~~ITcLais~Dg-------tlLlSG 295 (476)
T KOG0646|consen 230 ----RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRH---EENTQINVLVGHENESAITCLAISTDG-------TLLLSG 295 (476)
T ss_pred ----cEEEecCCcceEEeeehhcCCcccccccccccc---cccceeeeeccccCCcceeEEEEecCc-------cEEEee
Confidence 7999999999999998875431110 0 0000 11122333668888 99999999999 899999
Q ss_pred eCCCcEEEeEec
Q 037555 286 GADNTVRVFQVN 297 (298)
Q Consensus 286 ~~d~~i~iw~~~ 297 (298)
+.||.++|||+.
T Consensus 296 d~dg~VcvWdi~ 307 (476)
T KOG0646|consen 296 DEDGKVCVWDIY 307 (476)
T ss_pred CCCCCEEEEecc
Confidence 999999999974
No 75
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.9e-28 Score=179.90 Aligned_cols=257 Identities=19% Similarity=0.267 Sum_probs=212.9
Q ss_pred cccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC------------------------------
Q 037555 4 ATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP------------------------------ 47 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~------------------------------ 47 (298)
...+.|..++|.|+....||.+.|.++.|.+ .+..++++ .+|.
T Consensus 170 hTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~-s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~ 248 (481)
T KOG0300|consen 170 HTARIWSLESGACLATYTGHTGSVNSIKFHN-SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNR 248 (481)
T ss_pred cceeEEeeccccceeeecccccceeeEEecc-ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccccccc
Confidence 3457788999999999999999999999994 44444443 1221
Q ss_pred ---------------ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEc
Q 037555 48 ---------------ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFS 112 (298)
Q Consensus 48 ---------------~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~ 112 (298)
++..|.+|...|.++.|-..|+.+++++. |.+-.+||+++++.+..+.+|....+.+.-+
T Consensus 249 d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSW-----DRTAnlwDVEtge~v~~LtGHd~ELtHcstH 323 (481)
T KOG0300|consen 249 DTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASW-----DRTANLWDVETGEVVNILTGHDSELTHCSTH 323 (481)
T ss_pred ccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeec-----cccceeeeeccCceeccccCcchhccccccC
Confidence 25678899999999999999999999977 8899999999999999999999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeee
Q 037555 113 HDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILA 192 (298)
Q Consensus 113 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 192 (298)
|..+++++++.|.+.++||++.. ...+..+.+|...|+++.|.-+ ..+++|++|.+|++||+++.+... .+
T Consensus 324 ptQrLVvTsSrDtTFRLWDFRea------I~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRspl--AT 394 (481)
T KOG0300|consen 324 PTQRLVVTSSRDTTFRLWDFREA------IQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPL--AT 394 (481)
T ss_pred CcceEEEEeccCceeEeccchhh------cceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcc--ee
Confidence 99999999999999999999853 5667888999999999999964 468999999999999999876533 23
Q ss_pred cCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555 193 LPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE 272 (298)
Q Consensus 193 ~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 272 (298)
+. ..++++.++.+... .+|+.-.++..|++||+...+.... .-....+|..-|.+++|..+.
T Consensus 395 IR-tdS~~NRvavs~g~-----~iIAiPhDNRqvRlfDlnG~RlaRl------------PrtsRqgHrRMV~c~AW~eeh 456 (481)
T KOG0300|consen 395 IR-TDSPANRVAVSKGH-----PIIAIPHDNRQVRLFDLNGNRLARL------------PRTSRQGHRRMVTCCAWLEEH 456 (481)
T ss_pred ee-cCCccceeEeecCC-----ceEEeccCCceEEEEecCCCccccC------------CcccccccceeeeeeeccccC
Confidence 33 57889999999877 6888888899999999986532211 111256899999999998776
Q ss_pred CCCCCcceEEEeeeCCCcEEEeEecC
Q 037555 273 KPKNSRTMQLASCGADNTVRVFQVNV 298 (298)
Q Consensus 273 ~~~~~~~~~l~s~~~d~~i~iw~~~~ 298 (298)
+ -.-|++||.|..+.=|++++
T Consensus 457 p-----~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 457 P-----ACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred c-----ccccccccccceeeeeEecc
Confidence 2 14689999999999999863
No 76
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.1e-28 Score=184.44 Aligned_cols=214 Identities=21% Similarity=0.402 Sum_probs=186.5
Q ss_pred ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeE
Q 037555 48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF 127 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 127 (298)
.++.+.||++.|..++-......+.++ +.|.+-+||.++++.++.++.+|.+.|.+++|++.+.++++++.|++-
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtA-----SADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~ta 214 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTA-----SADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETA 214 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeec-----ccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcch
Confidence 456778999999999998877888888 459999999999999999999999999999999999999999999999
Q ss_pred EEEEec----cCCC-----------------------------CccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCC
Q 037555 128 SVFAIQ----RTGT-----------------------------GEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDK 174 (298)
Q Consensus 128 ~iwd~~----~~~~-----------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 174 (298)
+||... .++. +.....++..+.+|...|.+..|-..++.+++++.|.
T Consensus 215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR 294 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDR 294 (481)
T ss_pred HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccc
Confidence 999721 1110 0002345677889999999999999999999999999
Q ss_pred eEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeec
Q 037555 175 TVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFD 254 (298)
Q Consensus 175 ~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 254 (298)
+-.+||+++++.+. .+.+|....+.++-+|.. .++++.+.|.+.++||++ ..+..+.
T Consensus 295 TAnlwDVEtge~v~---~LtGHd~ELtHcstHptQ-----rLVvTsSrDtTFRLWDFR---------------eaI~sV~ 351 (481)
T KOG0300|consen 295 TANLWDVETGEVVN---ILTGHDSELTHCSTHPTQ-----RLVVTSSRDTTFRLWDFR---------------EAIQSVA 351 (481)
T ss_pred cceeeeeccCceec---cccCcchhccccccCCcc-----eEEEEeccCceeEeccch---------------hhcceee
Confidence 99999999999888 788999999999999988 799999999999999998 3444555
Q ss_pred cCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 255 PFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 255 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.+.+|...|+++.|..+. .+++++.|.+|++|||+
T Consensus 352 VFQGHtdtVTS~vF~~dd--------~vVSgSDDrTvKvWdLr 386 (481)
T KOG0300|consen 352 VFQGHTDTVTSVVFNTDD--------RVVSGSDDRTVKVWDLR 386 (481)
T ss_pred eecccccceeEEEEecCC--------ceeecCCCceEEEeeec
Confidence 588999999999999986 79999999999999986
No 77
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.3e-26 Score=171.62 Aligned_cols=255 Identities=11% Similarity=0.143 Sum_probs=199.6
Q ss_pred ccccceeeeecCcccccccCCCCCceeeeccCCCcccccccCCCC------------ceEEeccCCCceEEEEEcCCCCE
Q 037555 3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHTLWP------------ESHKLYGHGNELFSLCCDHQGKL 70 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~------------~~~~~~~h~~~v~~~~~s~~~~~ 70 (298)
+..++.++..+|+.+.++..+...+..+.|.-+....+.+.+.++ .++.|.||...|.+++.+|-+..
T Consensus 35 dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~ 114 (311)
T KOG1446|consen 35 DDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDT 114 (311)
T ss_pred CCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCe
Confidence 357889999999999999999999988888866666666665543 37888999999999999999999
Q ss_pred EEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeec
Q 037555 71 VASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEA 150 (298)
Q Consensus 71 l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 150 (298)
+++++ .|++|++||++..++...+..... ..++|.|+|-++|++.....|++||++.-..++. .......+
T Consensus 115 FlS~S-----~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF--~tf~i~~~ 185 (311)
T KOG1446|consen 115 FLSSS-----LDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPF--TTFSITDN 185 (311)
T ss_pred EEecc-----cCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecCCCeEEEEEecccCCCCc--eeEccCCC
Confidence 99995 499999999997777665553333 3588999999999998888999999998654432 11222224
Q ss_pred cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEE
Q 037555 151 HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWS 230 (298)
Q Consensus 151 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd 230 (298)
...+.+.+.|+|+|++|+.++..+.+++.|.-++..+..+...+....-.-+.+|.|++ +++++|+.||+|.+|+
T Consensus 186 ~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds-----~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 186 DEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS-----KFVLSGSDDGTIHVWN 260 (311)
T ss_pred CccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC-----cEEEEecCCCcEEEEE
Confidence 46678999999999999999999999999999888777443333222233678899999 8999999999999999
Q ss_pred eeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555 231 ISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ 295 (298)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~ 295 (298)
++++ ..+..+.. .+..++.++.|+|.. .++++++ ..+-+|=
T Consensus 261 ~~tg-------------~~v~~~~~--~~~~~~~~~~fnP~~-------~mf~sa~--s~l~fw~ 301 (311)
T KOG1446|consen 261 LETG-------------KKVAVLRG--PNGGPVSCVRFNPRY-------AMFVSAS--SNLVFWL 301 (311)
T ss_pred cCCC-------------cEeeEecC--CCCCCccccccCCce-------eeeeecC--ceEEEEe
Confidence 9887 55555432 278889999999976 5666664 4577773
No 78
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=4.2e-27 Score=196.77 Aligned_cols=205 Identities=15% Similarity=0.227 Sum_probs=154.9
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC----------ceeee---ccccccccEEEEEEcC-CCCEEEEEe
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS----------WKAMG---RLQSHSLTVTQIRFSH-DDNLLLSVS 122 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~----------~~~~~---~~~~~~~~v~~~~~~~-~~~~l~~~~ 122 (298)
..|.....++++..+++++ .+.....|+... |+... .+.+|.+.|.+++|+| ++++|++++
T Consensus 21 ~~i~~~~~~~d~~~~~~~n-----~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS 95 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACN-----DRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTAS 95 (493)
T ss_pred eccccccccCCCCCcEeEC-----CceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEe
Confidence 4455555666655555552 245555555432 22211 3678999999999999 889999999
Q ss_pred CCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCC-CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceE
Q 037555 123 RDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG-HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVT 201 (298)
Q Consensus 123 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~ 201 (298)
.|++|++||+...........++..+.+|...|.+++|+|++ ++|++++.|+.|++||+++++... .+..|...|.
T Consensus 96 ~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~---~l~~h~~~V~ 172 (493)
T PTZ00421 96 EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVE---VIKCHSDQIT 172 (493)
T ss_pred CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEE---EEcCCCCceE
Confidence 999999999976422111124566788999999999999975 799999999999999999887665 6667889999
Q ss_pred EEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccce-EEEEEeecCCCCCCCcce
Q 037555 202 ALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAA-VNRMAWKTHEKPKNSRTM 280 (298)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~ 280 (298)
+++|+|++ .+|++++.|+.|++||++++ ..+..+ .+|... +..+.|.+++ .
T Consensus 173 sla~spdG-----~lLatgs~Dg~IrIwD~rsg-------------~~v~tl---~~H~~~~~~~~~w~~~~-------~ 224 (493)
T PTZ00421 173 SLEWNLDG-----SLLCTTSKDKKLNIIDPRDG-------------TIVSSV---EAHASAKSQRCLWAKRK-------D 224 (493)
T ss_pred EEEEECCC-----CEEEEecCCCEEEEEECCCC-------------cEEEEE---ecCCCCcceEEEEcCCC-------C
Confidence 99999998 79999999999999999876 444443 356554 4567899887 5
Q ss_pred EEEeee----CCCcEEEeEec
Q 037555 281 QLASCG----ADNTVRVFQVN 297 (298)
Q Consensus 281 ~l~s~~----~d~~i~iw~~~ 297 (298)
.+++++ .|+.|++||++
T Consensus 225 ~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 225 LIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred eEEEEecCCCCCCeEEEEeCC
Confidence 666654 47899999985
No 79
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=1.3e-27 Score=185.05 Aligned_cols=200 Identities=16% Similarity=0.273 Sum_probs=176.2
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCC
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 136 (298)
-.++++...|....+.+| +.|..+.++|..+++.+..+.+|...|+.+.++|+...+++++.|..|++|.....
T Consensus 220 pgi~ald~~~s~~~ilTG-----G~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~- 293 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTG-----GEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS- 293 (506)
T ss_pred CCeeEEeecCCCCcceec-----CCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc-
Confidence 468889988887889999 45889999999999999999999999999999999999999999999999998873
Q ss_pred CCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccE
Q 037555 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGF 216 (298)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 216 (298)
........|..+|+.+..+|.+.||++++.|+...+.|++++..+..... ...+-.+++.+|+|+| .+
T Consensus 294 ------s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~-~~s~v~~ts~~fHpDg-----Li 361 (506)
T KOG0289|consen 294 ------SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSD-ETSDVEYTSAAFHPDG-----LI 361 (506)
T ss_pred ------cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEee-ccccceeEEeeEcCCc-----eE
Confidence 34556678999999999999999999999999999999999987763321 1234568999999999 79
Q ss_pred EEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 217 LAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 217 l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
+.+|..|+.|+|||+.++ .. ...+.+|.++|..++|+.+| .+|++++.|+.|++|||
T Consensus 362 fgtgt~d~~vkiwdlks~-------------~~---~a~Fpght~~vk~i~FsENG-------Y~Lat~add~~V~lwDL 418 (506)
T KOG0289|consen 362 FGTGTPDGVVKIWDLKSQ-------------TN---VAKFPGHTGPVKAISFSENG-------YWLATAADDGSVKLWDL 418 (506)
T ss_pred EeccCCCceEEEEEcCCc-------------cc---cccCCCCCCceeEEEeccCc-------eEEEEEecCCeEEEEEe
Confidence 999999999999999876 22 22377899999999999999 99999999999999999
Q ss_pred c
Q 037555 297 N 297 (298)
Q Consensus 297 ~ 297 (298)
+
T Consensus 419 R 419 (506)
T KOG0289|consen 419 R 419 (506)
T ss_pred h
Confidence 7
No 80
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=5.2e-28 Score=175.85 Aligned_cols=210 Identities=20% Similarity=0.337 Sum_probs=177.1
Q ss_pred EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeec--cccccccEEEEEEcC-CCCEEEEEeCCCe
Q 037555 50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR--LQSHSLTVTQIRFSH-DDNLLLSVSRDRQ 126 (298)
Q Consensus 50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~-~~~~l~~~~~dg~ 126 (298)
+.+.+|...|.+++|+.+|..|++|+. |+++.+|+++..+.... ..+|.+.|-.++|+| +..++++++.|.+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~-----dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ 88 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSF-----DKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKT 88 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeeccc-----CCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCce
Confidence 456789999999999999999999955 89999999987755443 468999999999998 5678999999999
Q ss_pred EEEEEeccCCCCcc------------------------------------------------------------------
Q 037555 127 FSVFAIQRTGTGEI------------------------------------------------------------------ 140 (298)
Q Consensus 127 i~iwd~~~~~~~~~------------------------------------------------------------------ 140 (298)
|++||++..+....
T Consensus 89 ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~Gl 168 (313)
T KOG1407|consen 89 IRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGL 168 (313)
T ss_pred EEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCC
Confidence 99999987542111
Q ss_pred ---------ceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecccc
Q 037555 141 ---------DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQ 211 (298)
Q Consensus 141 ---------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (298)
..+++..++.|.....|+.|+|+|++||+|+.|-.+.+||+...-+.+ .+..+.-+|+.+.|+.++
T Consensus 169 G~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R---~isRldwpVRTlSFS~dg-- 243 (313)
T KOG1407|consen 169 GCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICER---CISRLDWPVRTLSFSHDG-- 243 (313)
T ss_pred ceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhhe---eeccccCceEEEEeccCc--
Confidence 345566778899999999999999999999999999999999877776 677788999999999999
Q ss_pred CCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCC---
Q 037555 212 KNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD--- 288 (298)
Q Consensus 212 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d--- 288 (298)
++|++|++|..|-|=+++++ ..+..+. +.++...++|+|.. .+||-++.|
T Consensus 244 ---~~lASaSEDh~IDIA~vetG-------------d~~~eI~----~~~~t~tVAWHPk~-------~LLAyA~ddk~~ 296 (313)
T KOG1407|consen 244 ---RMLASASEDHFIDIAEVETG-------------DRVWEIP----CEGPTFTVAWHPKR-------PLLAYACDDKDG 296 (313)
T ss_pred ---ceeeccCccceEEeEecccC-------------CeEEEee----ccCCceeEEecCCC-------ceeeEEecCCCC
Confidence 89999999999999999988 5555553 78899999999998 788877754
Q ss_pred ------CcEEEeEe
Q 037555 289 ------NTVRVFQV 296 (298)
Q Consensus 289 ------~~i~iw~~ 296 (298)
|.+++|-+
T Consensus 297 d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 297 DSNREAGTVKIFGL 310 (313)
T ss_pred ccccccceeEEecC
Confidence 56777654
No 81
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.96 E-value=5e-28 Score=184.34 Aligned_cols=214 Identities=18% Similarity=0.364 Sum_probs=171.0
Q ss_pred ccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC----------------ceeeeccccccccEEEEEEcCC-C
Q 037555 53 YGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS----------------WKAMGRLQSHSLTVTQIRFSHD-D 115 (298)
Q Consensus 53 ~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~----------------~~~~~~~~~~~~~v~~~~~~~~-~ 115 (298)
..|.+.++.+.-++-++-.++++. .+.|.|+||++.. .+++.++.+|...=+.++|+|- .
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~asw---se~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~ 224 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASW---SENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKT 224 (440)
T ss_pred cccccccceeeecccCCcceeeee---cccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccc
Confidence 368888888888887666666666 6789999999842 2456778889999999999992 2
Q ss_pred CEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC-CCEEEEeeCCCeEEEEEccCCcceeeeeecC
Q 037555 116 NLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF-GHEFATGSRDKTVKIWAVENKSSVKQILALP 194 (298)
Q Consensus 116 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 194 (298)
-.|++|..-+.|++|...++.-. .-...+.+|...|-.++|+|. ...|++|+-||+|+|||+|.+.....+.. +
T Consensus 225 g~LlsGDc~~~I~lw~~~~g~W~----vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-k 299 (440)
T KOG0302|consen 225 GRLLSGDCVKGIHLWEPSTGSWK----VDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-K 299 (440)
T ss_pred cccccCccccceEeeeeccCcee----ecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-e
Confidence 35888888899999998874311 112345569999999999994 57899999999999999999855444433 7
Q ss_pred CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCC
Q 037555 195 PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKP 274 (298)
Q Consensus 195 ~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 274 (298)
.|++.|+-+.|+... .+|++|++||.++|||++.-+.. +++.. +.-|..+|++|.|+|...
T Consensus 300 Ah~sDVNVISWnr~~-----~lLasG~DdGt~~iwDLR~~~~~----------~pVA~---fk~Hk~pItsieW~p~e~- 360 (440)
T KOG0302|consen 300 AHNSDVNVISWNRRE-----PLLASGGDDGTLSIWDLRQFKSG----------QPVAT---FKYHKAPITSIEWHPHED- 360 (440)
T ss_pred ccCCceeeEEccCCc-----ceeeecCCCceEEEEEhhhccCC----------Cccee---EEeccCCeeEEEeccccC-
Confidence 799999999999987 69999999999999999976321 33444 456999999999999874
Q ss_pred CCCcceEEEeeeCCCcEEEeEecC
Q 037555 275 KNSRTMQLASCGADNTVRVFQVNV 298 (298)
Q Consensus 275 ~~~~~~~l~s~~~d~~i~iw~~~~ 298 (298)
..|+++|.|..|.||||.+
T Consensus 361 -----s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 361 -----SVIAASGEDNQITIWDLSV 379 (440)
T ss_pred -----ceEEeccCCCcEEEEEeec
Confidence 7889999999999999974
No 82
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.1e-27 Score=185.08 Aligned_cols=247 Identities=18% Similarity=0.291 Sum_probs=194.0
Q ss_pred cccccCCCCCceeeeccCCCccccccc------------------CCCCc----------eEEe-ccCCCceEEEEEcCC
Q 037555 17 LDTLESVPDAVPAVFTEPPIEDQLAWH------------------TLWPE----------SHKL-YGHGNELFSLCCDHQ 67 (298)
Q Consensus 17 ~~~~~~~~~~v~~~~~~~~~~~~~~~~------------------~~~~~----------~~~~-~~h~~~v~~~~~s~~ 67 (298)
...+..|.-.+.++++.|. .+...++ .+|+. .+.- ++|...|.+++.++|
T Consensus 135 ~~~~~~H~~s~~~vals~d-~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPD-DKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeecc-ccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 6777888888888888844 3333332 12221 1111 388999999999999
Q ss_pred CCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEE
Q 037555 68 GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR 147 (298)
Q Consensus 68 ~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 147 (298)
|++||+|+ .|..|.||+.++.+.++.+.+|.+.|.+++|-...+.+++++.|+.+++|+++. ...+.+
T Consensus 214 gkylatgg-----~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~-------~s~vet 281 (479)
T KOG0299|consen 214 GKYLATGG-----RDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQ-------LSYVET 281 (479)
T ss_pred CcEEEecC-----CCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhH-------hHHHHH
Confidence 99999994 589999999999999999999999999999998888999999999999999997 667888
Q ss_pred eeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEE
Q 037555 148 QEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIE 227 (298)
Q Consensus 148 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~ 227 (298)
+.+|.+.|..+....-++.+-+|+.|+++++|++.....+ .+.++.+.+-|++|-.+. .+++|+.+|.|.
T Consensus 282 lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql----ifrg~~~sidcv~~In~~------HfvsGSdnG~Ia 351 (479)
T KOG0299|consen 282 LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL----IFRGGEGSIDCVAFINDE------HFVSGSDNGSIA 351 (479)
T ss_pred HhCCccceeeechhcccceEEeccccceeEEEecccccee----eeeCCCCCeeeEEEeccc------ceeeccCCceEE
Confidence 8999999999988877787888889999999999554332 455678899999998874 899999999999
Q ss_pred EEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 228 LWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 228 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+|++...+.......+....... . ...+..+|++++..|.. .++++|+.+|.||+|.+.
T Consensus 352 LWs~~KKkplf~~~~AHgv~~~~---~-~~~~~~Witsla~i~~s-------dL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 352 LWSLLKKKPLFTSRLAHGVIPEL---D-PVNGNFWITSLAVIPGS-------DLLASGSWSGCVRLWKIE 410 (479)
T ss_pred EeeecccCceeEeeccccccCCc---c-ccccccceeeeEecccC-------ceEEecCCCCceEEEEec
Confidence 99998764332211111000000 0 11234589999999998 899999999999999864
No 83
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.3e-28 Score=184.57 Aligned_cols=204 Identities=20% Similarity=0.281 Sum_probs=178.2
Q ss_pred cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeec--------cccccccEEEEEEcCCCCEEEEEeCCC
Q 037555 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR--------LQSHSLTVTQIRFSHDDNLLLSVSRDR 125 (298)
Q Consensus 54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~dg 125 (298)
+.+..+-|..|+|||++|++|+. ||-|.+|+.-+|+..+. |.-+..+|.|+.|+.|...+++|+.||
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSv-----DGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG 285 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSV-----DGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG 285 (508)
T ss_pred ccccchhheeeCCCCceEeeccc-----cceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCC
Confidence 56677899999999999999954 99999999988875433 344788999999999999999999999
Q ss_pred eEEEEEeccCCCCccceeeeEEee-ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEE
Q 037555 126 QFSVFAIQRTGTGEIDYQLIARQE-AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALS 204 (298)
Q Consensus 126 ~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~ 204 (298)
.|++|.+++ +.+++.+. .|...|+++.|+.|+..+++++.|.++++.-++++++++ .+.+|.+.|+...
T Consensus 286 kIKvWri~t-------G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LK---EfrGHsSyvn~a~ 355 (508)
T KOG0275|consen 286 KIKVWRIET-------GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLK---EFRGHSSYVNEAT 355 (508)
T ss_pred cEEEEEEec-------chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHH---HhcCccccccceE
Confidence 999999998 55666665 899999999999999999999999999999999999998 7889999999999
Q ss_pred EeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEe
Q 037555 205 WVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLAS 284 (298)
Q Consensus 205 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s 284 (298)
|.++| ..+++++.||+|++|+..+. .|+..+.+. +...+|+++..-|.++ ..++.
T Consensus 356 ft~dG-----~~iisaSsDgtvkvW~~Ktt-------------eC~~Tfk~~-~~d~~vnsv~~~PKnp------eh~iV 410 (508)
T KOG0275|consen 356 FTDDG-----HHIISASSDGTVKVWHGKTT-------------ECLSTFKPL-GTDYPVNSVILLPKNP------EHFIV 410 (508)
T ss_pred EcCCC-----CeEEEecCCccEEEecCcch-------------hhhhhccCC-CCcccceeEEEcCCCC------ceEEE
Confidence 99999 89999999999999999988 666666533 3567899988888775 78888
Q ss_pred eeCCCcEEEeEec
Q 037555 285 CGADNTVRVFQVN 297 (298)
Q Consensus 285 ~~~d~~i~iw~~~ 297 (298)
|...++|.|-+++
T Consensus 411 CNrsntv~imn~q 423 (508)
T KOG0275|consen 411 CNRSNTVYIMNMQ 423 (508)
T ss_pred EcCCCeEEEEecc
Confidence 8888888887654
No 84
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=2.9e-26 Score=192.78 Aligned_cols=232 Identities=11% Similarity=0.171 Sum_probs=169.2
Q ss_pred ceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCCc-------------eEEeccCCCceEEEEEcCC
Q 037555 7 ETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWPE-------------SHKLYGHGNELFSLCCDHQ 67 (298)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~-------------~~~~~~h~~~v~~~~~s~~ 67 (298)
+.++......+..+.+|.+.|..+.|.|.....++++ ++|+. +..+.+|...|.+++|+|+
T Consensus 57 ~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~ 136 (568)
T PTZ00420 57 RLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPM 136 (568)
T ss_pred EeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCC
Confidence 3344444456778899999999999996556666665 46642 2357889999999999999
Q ss_pred CCEE-EeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeE
Q 037555 68 GKLV-ASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIA 146 (298)
Q Consensus 68 ~~~l-~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 146 (298)
+..+ ++++ .|+.|+|||+.+++.+..+. |...|.+++|+|+|++|++++.|+.|++||++. ...+.
T Consensus 137 g~~iLaSgS-----~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rs-------g~~i~ 203 (568)
T PTZ00420 137 NYYIMCSSG-----FDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRK-------QEIAS 203 (568)
T ss_pred CCeEEEEEe-----CCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCC-------CcEEE
Confidence 8765 6774 49999999999888776665 667899999999999999999999999999987 55567
Q ss_pred EeeccCCceEE-----EEEccCCCEEEEeeCCC----eEEEEEccCC-cceeeeeecCCCCCceEEEEEeeccccCCccE
Q 037555 147 RQEAHKRIIWS-----CSWNPFGHEFATGSRDK----TVKIWAVENK-SSVKQILALPPFNSSVTALSWVGLDRQKNHGF 216 (298)
Q Consensus 147 ~~~~~~~~v~~-----~~~~~~~~~l~~~~~dg----~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 216 (298)
.+..|.+.+.. ..|++++.+|++++.|+ .|++||++.. .++. ...+....+.+......+++ .+
T Consensus 204 tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~-~~~ld~~~~~L~p~~D~~tg-----~l 277 (568)
T PTZ00420 204 SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALV-TMSIDNASAPLIPHYDESTG-----LI 277 (568)
T ss_pred EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceE-EEEecCCccceEEeeeCCCC-----CE
Confidence 77888775433 23457888999988764 7999999963 3333 21333222333222223334 78
Q ss_pred EEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555 217 LAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE 272 (298)
Q Consensus 217 l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 272 (298)
+++|..|+.|++|++..+ .+..+.++. +..++.+++|.|..
T Consensus 278 ~lsGkGD~tIr~~e~~~~--------------~~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 278 YLIGKGDGNCRYYQHSLG--------------SIRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred EEEEECCCeEEEEEccCC--------------cEEeecccc-cCCCccceEEcccc
Confidence 999999999999999754 223333333 56778888888865
No 85
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=9.1e-27 Score=182.82 Aligned_cols=242 Identities=15% Similarity=0.168 Sum_probs=191.4
Q ss_pred ceeeeecCcccccccCCCCCceeeeccCCCcccccccC------CCC-----ceEEeccCCCceEEEEEcCCCC-EEEeE
Q 037555 7 ETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHT------LWP-----ESHKLYGHGNELFSLCCDHQGK-LVASS 74 (298)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------~~~-----~~~~~~~h~~~v~~~~~s~~~~-~l~~~ 74 (298)
+.+...+-.....+.-..+.|..+.|. .++..++.+. +++ .++.+.+|+.+|..+.|+|.+. .|++|
T Consensus 51 qly~~~~~~~~k~~srFk~~v~s~~fR-~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~ 129 (487)
T KOG0310|consen 51 QLYSSVTRSVRKTFSRFKDVVYSVDFR-SDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSG 129 (487)
T ss_pred EEEecchhhhhhhHHhhccceeEEEee-cCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEec
Confidence 444555555566677777788888777 5666666652 222 2456789999999999999655 55555
Q ss_pred eccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCC
Q 037555 75 CKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKR 153 (298)
Q Consensus 75 ~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 153 (298)
++|+.+++||+.+......+.+|+..|.|.+|+| ++..+++|+.||.|++||.+... ..+..+ .|..
T Consensus 130 -----sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~------~~v~el-nhg~ 197 (487)
T KOG0310|consen 130 -----SDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT------SRVVEL-NHGC 197 (487)
T ss_pred -----CCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC------ceeEEe-cCCC
Confidence 5699999999998877667899999999999999 45689999999999999999742 234443 5899
Q ss_pred ceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555 154 IIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 154 ~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 233 (298)
+|..+.+-|.|..+++++. ..|++||+-++..... ....|...|+|+++..++ ..|++|+-|+.|++||+.+
T Consensus 198 pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~--~~~~H~KtVTcL~l~s~~-----~rLlS~sLD~~VKVfd~t~ 269 (487)
T KOG0310|consen 198 PVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLT--SMFNHNKTVTCLRLASDS-----TRLLSGSLDRHVKVFDTTN 269 (487)
T ss_pred ceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehh--hhhcccceEEEEEeecCC-----ceEeecccccceEEEEccc
Confidence 9999999999999999885 6799999996654431 233388999999999988 7999999999999999766
Q ss_pred cccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEE
Q 037555 234 NRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRV 293 (298)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 293 (298)
. +.+..+. ..++|.+|+.+|++ ..++.|-.||.+.+
T Consensus 270 ~-------------Kvv~s~~----~~~pvLsiavs~dd-------~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 270 Y-------------KVVHSWK----YPGPVLSIAVSPDD-------QTVVIGMSNGLVSI 305 (487)
T ss_pred e-------------EEEEeee----cccceeeEEecCCC-------ceEEEecccceeee
Confidence 5 5556554 57899999999998 89999999998765
No 86
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.96 E-value=1e-27 Score=189.50 Aligned_cols=218 Identities=21% Similarity=0.338 Sum_probs=167.7
Q ss_pred EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee----eeccc-cccccEEEEEEcCCCCEEEEEeCC
Q 037555 50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA----MGRLQ-SHSLTVTQIRFSHDDNLLLSVSRD 124 (298)
Q Consensus 50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~----~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d 124 (298)
-.+.+|+..|.++++.|.|..|++|+. |..|++||+..... .+.++ +....|.+++|++.+..|++.+..
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~-----Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~ 235 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSL-----DYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS 235 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccc-----cceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC
Confidence 456789999999999999999999965 89999999974322 22222 345689999999999999999989
Q ss_pred CeEEEEEeccCCC-----CccceeeeEEeeccCCceEEEEEccCC-CEEEEeeCCCeEEEEEccCCcceeeeeec---CC
Q 037555 125 RQFSVFAIQRTGT-----GEIDYQLIARQEAHKRIIWSCSWNPFG-HEFATGSRDKTVKIWAVENKSSVKQILAL---PP 195 (298)
Q Consensus 125 g~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~---~~ 195 (298)
...+|+|-.-... +..+..-+..-++|...+++.+|+|.. +.|++++.||++|+||+...+....+... .+
T Consensus 236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g 315 (641)
T KOG0772|consen 236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG 315 (641)
T ss_pred cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence 9999999663221 111122233446799999999999954 78999999999999999876544322221 13
Q ss_pred CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccc--eEEEEEeecCCC
Q 037555 196 FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVA--AVNRMAWKTHEK 273 (298)
Q Consensus 196 ~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~ 273 (298)
..-++++++|++++ ..|++|+.||.|.+|+...... .+...+ -.+|.. .|++|.||+++
T Consensus 316 ~Rv~~tsC~~nrdg-----~~iAagc~DGSIQ~W~~~~~~v-----------~p~~~v--k~AH~~g~~Itsi~FS~dg- 376 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDG-----KLIAAGCLDGSIQIWDKGSRTV-----------RPVMKV--KDAHLPGQDITSISFSYDG- 376 (641)
T ss_pred cccCceeeecCCCc-----chhhhcccCCceeeeecCCccc-----------ccceEe--eeccCCCCceeEEEecccc-
Confidence 34568999999999 7899999999999999865421 222222 235666 89999999999
Q ss_pred CCCCcceEEEeeeCCCcEEEeEec
Q 037555 274 PKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 274 ~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
++|++-|.|+++++|||+
T Consensus 377 ------~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 377 ------NYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred ------chhhhccCCCceeeeecc
Confidence 899999999999999997
No 87
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=7.1e-27 Score=173.25 Aligned_cols=211 Identities=23% Similarity=0.352 Sum_probs=160.6
Q ss_pred CCCceEEEEEcC-CCCEEEeEeccCCCCceEEEEEEcCC-ceee-eccccccccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 037555 55 HGNELFSLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGS-WKAM-GRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFA 131 (298)
Q Consensus 55 h~~~v~~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 131 (298)
-.+.|.+++||| ...++++++. |++||+|+++. +..+ +....|.++|.+++|+.||..+++|+.|+.+++||
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SW-----D~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSW-----DGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred cccchheeEeccccCceEEeccc-----CCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence 467899999999 4556667765 99999999986 3433 33557999999999999999999999999999999
Q ss_pred eccCCCCccceeeeEEeeccCCceEEEEEccCCC--EEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecc
Q 037555 132 IQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGH--EFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLD 209 (298)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (298)
+.++ ....+..|..+|..+.|-+... .|++||.|.+|+.||+|...++. ++. .+..++++..-.
T Consensus 101 L~S~--------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~---t~~-LPeRvYa~Dv~~-- 166 (347)
T KOG0647|consen 101 LASG--------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVA---TLQ-LPERVYAADVLY-- 166 (347)
T ss_pred ccCC--------CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeee---eee-ccceeeehhccC--
Confidence 9973 3667788999999999988654 89999999999999999888777 433 556777776654
Q ss_pred ccCCccEEEEeecCCcEEEEEeeecccccccCCCCC--Ccce-----------------------------eeeeccCCc
Q 037555 210 RQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPS--TANI-----------------------------IIRFDPFAC 258 (298)
Q Consensus 210 ~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~-----------------------------~~~~~~~~~ 258 (298)
.+++++..++.|.+|++++..........+. +.++ ...| .++.
T Consensus 167 -----pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nF-tFkC 240 (347)
T KOG0647|consen 167 -----PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNF-TFKC 240 (347)
T ss_pred -----ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCce-eEEE
Confidence 4788888899999999976532221111110 0000 0001 1334
Q ss_pred cc---------ceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 259 HV---------AAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 259 ~~---------~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
|. ..|++|+|+|.. ..|+|+|.||+..+||-+
T Consensus 241 HR~~~~~~~~VYaVNsi~FhP~h-------gtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 241 HRSTNSVNDDVYAVNSIAFHPVH-------GTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred eccCCCCCCceEEecceEeeccc-------ceEEEecCCceEEEecch
Confidence 44 368999999988 899999999999999853
No 88
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.1e-26 Score=191.18 Aligned_cols=239 Identities=13% Similarity=0.176 Sum_probs=199.6
Q ss_pred ccccCCCCCceeeeccCCCccccccc-----CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEE
Q 037555 18 DTLESVPDAVPAVFTEPPIEDQLAWH-----TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWL 87 (298)
Q Consensus 18 ~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~v 87 (298)
.++.+|...|..+.++ .+...++++ .+|. +++++. .+-+.+..|.|.++++++| ...|.+.+
T Consensus 367 i~~~GHR~dVRsl~vS-~d~~~~~Sga~~SikiWn~~t~kciRTi~--~~y~l~~~Fvpgd~~Iv~G-----~k~Gel~v 438 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVS-SDSILLASGAGESIKIWNRDTLKCIRTIT--CGYILASKFVPGDRYIVLG-----TKNGELQV 438 (888)
T ss_pred eeeccchhheeEEEee-cCceeeeecCCCcEEEEEccCcceeEEec--cccEEEEEecCCCceEEEe-----ccCCceEE
Confidence 5667999999999888 445555555 4663 566664 3478999999999999999 45899999
Q ss_pred EEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccce-e-----eeEEeeccCCceEEEEEc
Q 037555 88 WEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDY-Q-----LIARQEAHKRIIWSCSWN 161 (298)
Q Consensus 88 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~-----~~~~~~~~~~~v~~~~~~ 161 (298)
||+.+...+.+.++|.+.|.+++.+||+..+++++.|.+|++||+......+... + ..+.+ .-...|.++.++
T Consensus 439 fdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~S 517 (888)
T KOG0306|consen 439 FDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVS 517 (888)
T ss_pred EEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEc
Confidence 9999999999999999999999999999999999999999999986432210000 1 11122 235679999999
Q ss_pred cCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccC
Q 037555 162 PFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVST 241 (298)
Q Consensus 162 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 241 (298)
||+.+|+++=-|.+|++|-+.+.+... .+.+|.-||.||..+|++ .+++||+.|..|++|-+.-+
T Consensus 518 pdgk~LaVsLLdnTVkVyflDtlKFfl---sLYGHkLPV~smDIS~DS-----klivTgSADKnVKiWGLdFG------- 582 (888)
T KOG0306|consen 518 PDGKLLAVSLLDNTVKVYFLDTLKFFL---SLYGHKLPVLSMDISPDS-----KLIVTGSADKNVKIWGLDFG------- 582 (888)
T ss_pred CCCcEEEEEeccCeEEEEEecceeeee---eecccccceeEEeccCCc-----CeEEeccCCCceEEeccccc-------
Confidence 999999999999999999999877655 778999999999999999 89999999999999999888
Q ss_pred CCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 242 PAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
.|.+.+ -+|...|.++.|-|.. .++.+||.|+.|+-||-
T Consensus 583 ------DCHKS~---fAHdDSvm~V~F~P~~-------~~FFt~gKD~kvKqWDg 621 (888)
T KOG0306|consen 583 ------DCHKSF---FAHDDSVMSVQFLPKT-------HLFFTCGKDGKVKQWDG 621 (888)
T ss_pred ------hhhhhh---hcccCceeEEEEcccc-------eeEEEecCcceEEeech
Confidence 666664 4699999999999988 89999999999999974
No 89
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1e-26 Score=167.69 Aligned_cols=219 Identities=22% Similarity=0.332 Sum_probs=175.7
Q ss_pred ceEEeccCCCceEEEEEcC--CCCEEEeEeccCCCCceEEEEEEcCCcee--eeccccccccEEEEEEcCC--CCEEEEE
Q 037555 48 ESHKLYGHGNELFSLCCDH--QGKLVASSCKAQSTAAAEIWLWEVGSWKA--MGRLQSHSLTVTQIRFSHD--DNLLLSV 121 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~--~~~~l~~~~~~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~--~~~l~~~ 121 (298)
.+.+|.||.++|.-++|.. .|.+||++++ ||.|.||.-+.++- ......|...|++++|.|. |-.|+.+
T Consensus 48 ll~~L~Gh~GPVwqv~wahPk~G~iLAScsY-----DgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~Laca 122 (299)
T KOG1332|consen 48 LLAELTGHSGPVWKVAWAHPKFGTILASCSY-----DGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACA 122 (299)
T ss_pred eeeEecCCCCCeeEEeecccccCcEeeEeec-----CceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEe
Confidence 5678999999999999975 7999999965 99999999887743 3446789999999999995 4588999
Q ss_pred eCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC---C-----------CEEEEeeCCCeEEEEEccCCcce
Q 037555 122 SRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF---G-----------HEFATGSRDKTVKIWAVENKSSV 187 (298)
Q Consensus 122 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~-----------~~l~~~~~dg~i~~wd~~~~~~~ 187 (298)
+.||.|.|.+.+.... ....+....|.-.|++++|.|. | ..|++|+.|..|+||+....+-.
T Consensus 123 sSDG~vsvl~~~~~g~----w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~ 198 (299)
T KOG1332|consen 123 SSDGKVSVLTYDSSGG----WTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK 198 (299)
T ss_pred eCCCcEEEEEEcCCCC----ccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchh
Confidence 9999999999987522 3445666789999999999985 4 56999999999999999886433
Q ss_pred eeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEE
Q 037555 188 KQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMA 267 (298)
Q Consensus 188 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 267 (298)
.. ..+.+|...|+.++|.|.-. -...+|+++++||.|.||..+....+ ..... +......+..+.
T Consensus 199 ~e-~~l~~H~dwVRDVAwaP~~g-l~~s~iAS~SqDg~viIwt~~~e~e~----------wk~tl---l~~f~~~~w~vS 263 (299)
T KOG1332|consen 199 LE-RTLEGHKDWVRDVAWAPSVG-LPKSTIASCSQDGTVIIWTKDEEYEP----------WKKTL---LEEFPDVVWRVS 263 (299)
T ss_pred hh-hhhhhcchhhhhhhhccccC-CCceeeEEecCCCcEEEEEecCccCc----------ccccc---cccCCcceEEEE
Confidence 22 25788999999999999752 22368999999999999988733111 11122 223567899999
Q ss_pred eecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 268 WKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 268 ~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
|+..+ +.|+.++.|+.+.+|.-+
T Consensus 264 WS~sG-------n~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 264 WSLSG-------NILAVSGGDNKVTLWKEN 286 (299)
T ss_pred Eeccc-------cEEEEecCCcEEEEEEeC
Confidence 99999 899999999999999754
No 90
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.5e-26 Score=193.82 Aligned_cols=200 Identities=22% Similarity=0.316 Sum_probs=174.4
Q ss_pred eEE-eccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeE
Q 037555 49 SHK-LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF 127 (298)
Q Consensus 49 ~~~-~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 127 (298)
+.. +.||.+.|.++++..-+.+|++|+. |.++++||..++++..++.+|.+.|.++... ...+++|+.|.+|
T Consensus 241 i~~~l~GH~g~V~~l~~~~~~~~lvsgS~-----D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tV 313 (537)
T KOG0274|consen 241 ILTRLVGHFGGVWGLAFPSGGDKLVSGST-----DKTERVWDCSTGECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTV 313 (537)
T ss_pred EEeeccCCCCCceeEEEecCCCEEEEEec-----CCcEEeEecCCCcEEEEecCCCceEEEEEcc--CceEeeccCCceE
Confidence 444 8899999999999887889999965 9999999999999999999999999998874 4578889999999
Q ss_pred EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555 128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG 207 (298)
Q Consensus 128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (298)
++|++++ ...+..+.+|..+|.++..+ +.++++|+.|++|++||+.+.+++. .+.+|...|+++.+.+
T Consensus 314 kVW~v~n-------~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~---sl~gH~~~V~sl~~~~ 381 (537)
T KOG0274|consen 314 KVWDVTN-------GACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLK---SLSGHTGRVYSLIVDS 381 (537)
T ss_pred EEEeccC-------cceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeee---eecCCcceEEEEEecC
Confidence 9999997 66788888899999999998 8899999999999999999888888 8889999999998877
Q ss_pred ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC
Q 037555 208 LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA 287 (298)
Q Consensus 208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~ 287 (298)
. ..+++|+.|+.|++||+++.. +++.. +.+|..-+..+.+.. ++|++++.
T Consensus 382 ~------~~~~Sgs~D~~IkvWdl~~~~------------~c~~t---l~~h~~~v~~l~~~~---------~~Lvs~~a 431 (537)
T KOG0274|consen 382 E------NRLLSGSLDTTIKVWDLRTKR------------KCIHT---LQGHTSLVSSLLLRD---------NFLVSSSA 431 (537)
T ss_pred c------ceEEeeeeccceEeecCCchh------------hhhhh---hcCCccccccccccc---------ceeEeccc
Confidence 4 379999999999999999762 22222 667888887766644 68999999
Q ss_pred CCcEEEeEec
Q 037555 288 DNTVRVFQVN 297 (298)
Q Consensus 288 d~~i~iw~~~ 297 (298)
|++|++||..
T Consensus 432 D~~Ik~WD~~ 441 (537)
T KOG0274|consen 432 DGTIKLWDAE 441 (537)
T ss_pred cccEEEeecc
Confidence 9999999864
No 91
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=3.4e-27 Score=181.71 Aligned_cols=249 Identities=18% Similarity=0.209 Sum_probs=199.7
Q ss_pred ccceeeeecCc--ccccccCCCCCceeeeccCCCccccccc-----CCCC-----ceEEeccCCCceEEEEEcCCCCEEE
Q 037555 5 TRETVERHGND--GLDTLESVPDAVPAVFTEPPIEDQLAWH-----TLWP-----ESHKLYGHGNELFSLCCDHQGKLVA 72 (298)
Q Consensus 5 ~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~ 72 (298)
.++.|+...++ ...+|.|..+++..+.+.++....++.. ++|+ ...+|.||++.|+++.|......++
T Consensus 198 ~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vV 277 (459)
T KOG0288|consen 198 IIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVV 277 (459)
T ss_pred hhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhcccccee
Confidence 34555655555 7888999999999999997777666665 5885 5788999999999999988777788
Q ss_pred eEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccC
Q 037555 73 SSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHK 152 (298)
Q Consensus 73 ~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 152 (298)
+|+ .|.+|++||+.+..+.+++. ..+.+.+|..+ ...++++..|+.|++||.+. .........+
T Consensus 278 sgs-----~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs-------~~~~~sv~~g- 341 (459)
T KOG0288|consen 278 SGS-----ADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRS-------ADKTRSVPLG- 341 (459)
T ss_pred ecc-----ccchhhhhhhhhhheecccc-ccccccceEec--ceeeeecccccceEEEeccC-------CceeeEeecC-
Confidence 884 59999999999888877755 34556777765 56789999999999999987 4445555544
Q ss_pred CceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC-CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEe
Q 037555 153 RIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP-PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSI 231 (298)
Q Consensus 153 ~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~ 231 (298)
+.|+++..++++..+++++.|.++.+.|+++......+.... ......+.+.|+|++ .|+++|+.||.|+||++
T Consensus 342 g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~-----~YvaAGS~dgsv~iW~v 416 (459)
T KOG0288|consen 342 GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDG-----SYVAAGSADGSVYIWSV 416 (459)
T ss_pred cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCC-----ceeeeccCCCcEEEEEc
Confidence 589999999999999999999999999999987766332211 123448899999999 79999999999999999
Q ss_pred eecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555 232 SVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ 295 (298)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~ 295 (298)
.++ ++...+.. ......|+++.|+|.| ..|++++.++.+.+|.
T Consensus 417 ~tg-------------KlE~~l~~-s~s~~aI~s~~W~~sG-------~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 417 FTG-------------KLEKVLSL-STSNAAITSLSWNPSG-------SGLLSADKQKAVTLWT 459 (459)
T ss_pred cCc-------------eEEEEecc-CCCCcceEEEEEcCCC-------chhhcccCCcceEecC
Confidence 988 66666543 2223379999999999 8999999999999993
No 92
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.95 E-value=1.8e-26 Score=175.91 Aligned_cols=227 Identities=19% Similarity=0.272 Sum_probs=171.7
Q ss_pred CCCCceEEeccCCCceEEEEEcCCC-CEEEeEeccCCCCceEEEEEEcCCceee---eccccccccEEEEEEcCC-CCEE
Q 037555 44 TLWPESHKLYGHGNELFSLCCDHQG-KLVASSCKAQSTAAAEIWLWEVGSWKAM---GRLQSHSLTVTQIRFSHD-DNLL 118 (298)
Q Consensus 44 ~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~~~~~~~~~~d~~i~vw~~~~~~~~---~~~~~~~~~v~~~~~~~~-~~~l 118 (298)
....++.++.+|...=++++|||-. ..|++| +--+.|++|...++.-. ..|.+|+..|..++|+|. ...|
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsG-----Dc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vf 273 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSG-----DCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVF 273 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccC-----ccccceEeeeeccCceeecCccccccccchhhhccCCccCceE
Confidence 3445789999999999999999932 246666 44678999999876532 347789999999999994 4689
Q ss_pred EEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCC
Q 037555 119 LSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNS 198 (298)
Q Consensus 119 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 198 (298)
++|+.||+|+|||++..... ..+. .+.|.+.|+-|.|+....+||+|+.||+++|||+|+.+.-..+..++-|..
T Consensus 274 aScS~DgsIrIWDiRs~~~~----~~~~-~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~ 348 (440)
T KOG0302|consen 274 ASCSCDGSIRIWDIRSGPKK----AAVS-TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKA 348 (440)
T ss_pred EeeecCceEEEEEecCCCcc----ceeE-eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccC
Confidence 99999999999999986431 2233 388999999999999888999999999999999998777666778888999
Q ss_pred ceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccC-CCCCC--cceeeeeccCCcccceEEEEEeecCCCCC
Q 037555 199 SVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVST-PAPST--ANIIIRFDPFACHVAAVNRMAWKTHEKPK 275 (298)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 275 (298)
+|+++.|+|... ..|++++.|.+|.+||+....-..... ..... .-+...+... .-...|..+.|++.-+
T Consensus 349 pItsieW~p~e~----s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVH-qGQke~KevhWH~QiP-- 421 (440)
T KOG0302|consen 349 PITSIEWHPHED----SVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVH-QGQKEVKEVHWHRQIP-- 421 (440)
T ss_pred CeeEEEeccccC----ceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEe-cchhHhhhheeccCCC--
Confidence 999999999775 789999999999999997643211100 00000 0000111100 1245688899999875
Q ss_pred CCcceEEEeeeCCCcE
Q 037555 276 NSRTMQLASCGADNTV 291 (298)
Q Consensus 276 ~~~~~~l~s~~~d~~i 291 (298)
.+|++.+.||.-
T Consensus 422 ----G~lvsTa~dGfn 433 (440)
T KOG0302|consen 422 ----GLLVSTAIDGFN 433 (440)
T ss_pred ----CeEEEeccccee
Confidence 789999999843
No 93
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=9e-28 Score=182.13 Aligned_cols=213 Identities=17% Similarity=0.275 Sum_probs=171.6
Q ss_pred CceEEeccCCCceEEEEEcCCC-CEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCC
Q 037555 47 PESHKLYGHGNELFSLCCDHQG-KLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDR 125 (298)
Q Consensus 47 ~~~~~~~~h~~~v~~~~~s~~~-~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 125 (298)
|.+..|.||.+.|.|++=+|.. ..+++|+ .||.|++||+.+.++..++.+|.+.|..|++.. ..+++++.|.
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs-----~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDK 129 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGS-----CDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDK 129 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccc-----cCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCc
Confidence 4677889999999999999976 7788885 499999999999999999999999999999976 6789999999
Q ss_pred eEEEEEeccCCCCcc-------------------------------ceeeeEEeeccCCceEEEEEccCC-CEEEEeeCC
Q 037555 126 QFSVFAIQRTGTGEI-------------------------------DYQLIARQEAHKRIIWSCSWNPFG-HEFATGSRD 173 (298)
Q Consensus 126 ~i~iwd~~~~~~~~~-------------------------------~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d 173 (298)
+|+.|.+..+..... ...+++.+..-...|.++.|+|.. ..|+++..|
T Consensus 130 tvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD 209 (433)
T KOG0268|consen 130 TVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD 209 (433)
T ss_pred ceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence 999998543210000 112333344445567888899854 677788899
Q ss_pred CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeee
Q 037555 174 KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRF 253 (298)
Q Consensus 174 g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 253 (298)
+.|.+||+++..++..+. ....-+.++|+|.. ..+++|++|..++.||++.- ...+
T Consensus 210 rsIvLyD~R~~~Pl~KVi----~~mRTN~IswnPea-----fnF~~a~ED~nlY~~DmR~l---------------~~p~ 265 (433)
T KOG0268|consen 210 RSIVLYDLRQASPLKKVI----LTMRTNTICWNPEA-----FNFVAANEDHNLYTYDMRNL---------------SRPL 265 (433)
T ss_pred CceEEEecccCCccceee----eeccccceecCccc-----cceeeccccccceehhhhhh---------------cccc
Confidence 999999999998887442 34456789999976 67889999999999999854 3334
Q ss_pred ccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 254 DPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 254 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
..+.+|.+.|.+++|+|.| .-+++||.|.+|+||.++
T Consensus 266 ~v~~dhvsAV~dVdfsptG-------~EfvsgsyDksIRIf~~~ 302 (433)
T KOG0268|consen 266 NVHKDHVSAVMDVDFSPTG-------QEFVSGSYDKSIRIFPVN 302 (433)
T ss_pred hhhcccceeEEEeccCCCc-------chhccccccceEEEeecC
Confidence 4477899999999999999 899999999999999764
No 94
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=3.6e-25 Score=164.70 Aligned_cols=261 Identities=21% Similarity=0.352 Sum_probs=193.5
Q ss_pred cCCCCCceeeeccCCCccccccc------CC---------CCceEEeccCCCceEEEEEcC--CCCEEEeEeccCCCCce
Q 037555 21 ESVPDAVPAVFTEPPIEDQLAWH------TL---------WPESHKLYGHGNELFSLCCDH--QGKLVASSCKAQSTAAA 83 (298)
Q Consensus 21 ~~~~~~v~~~~~~~~~~~~~~~~------~~---------~~~~~~~~~h~~~v~~~~~s~--~~~~l~~~~~~~~~~d~ 83 (298)
.+|.+-|.++.|+ +.+.++++. ++ |.+-...+.|.+.|..+.|.+ -|+.+|+++. |+
T Consensus 10 s~h~DlihdVs~D-~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~-----Dr 83 (361)
T KOG2445|consen 10 SGHKDLIHDVSFD-FYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSY-----DR 83 (361)
T ss_pred cCCcceeeeeeec-ccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEec-----CC
Confidence 4788889999998 778887776 23 345566788999999999965 5899999965 99
Q ss_pred EEEEEEcCC---------ceeeeccccccccEEEEEEcC--CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEee---
Q 037555 84 EIWLWEVGS---------WKAMGRLQSHSLTVTQIRFSH--DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQE--- 149 (298)
Q Consensus 84 ~i~vw~~~~---------~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--- 149 (298)
++.||.-.. .....++......|+++.|.| -|-.|++++.||.++||+......... +.+...+.
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~-W~Lq~Ei~~~~ 162 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ-WTLQHEIQNVI 162 (361)
T ss_pred ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc-chhhhhhhhcc
Confidence 999998621 123344566778999999999 567899999999999999766433221 33333332
Q ss_pred ----ccCCceEEEEEccC---CCEEEEeeCC-----CeEEEEEccCCc-ceeeeeecCCCCCceEEEEEeeccccCCccE
Q 037555 150 ----AHKRIIWSCSWNPF---GHEFATGSRD-----KTVKIWAVENKS-SVKQILALPPFNSSVTALSWVGLDRQKNHGF 216 (298)
Q Consensus 150 ----~~~~~v~~~~~~~~---~~~l~~~~~d-----g~i~~wd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 216 (298)
.+..+..|+.|+|. ..+|++|+.+ +.++||...... ....+..+.+|..+|+.++|.|.- .....+
T Consensus 163 ~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~-Gr~y~~ 241 (361)
T KOG2445|consen 163 DPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNI-GRSYHL 241 (361)
T ss_pred CCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecccc-CCceee
Confidence 45677889999984 4688888865 478888765433 445555778999999999999975 233368
Q ss_pred EEEeecCCcEEEEEeeecccccccC----CCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEE
Q 037555 217 LAVGMESGVIELWSISVNRTNDVST----PAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVR 292 (298)
Q Consensus 217 l~~g~~dg~i~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 292 (298)
|++++.|| |+||++...+...... +.....-.+..+..+..|...|+.+.|+-.| ..|++.|.||+||
T Consensus 242 lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG-------tiLsStGdDG~VR 313 (361)
T KOG2445|consen 242 LAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG-------TILSSTGDDGCVR 313 (361)
T ss_pred EEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee-------eEEeecCCCceee
Confidence 99999999 9999998643222111 1111113345566678899999999999999 8999999999999
Q ss_pred EeEec
Q 037555 293 VFQVN 297 (298)
Q Consensus 293 iw~~~ 297 (298)
+|..+
T Consensus 314 LWkan 318 (361)
T KOG2445|consen 314 LWKAN 318 (361)
T ss_pred ehhhh
Confidence 99754
No 95
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=3.5e-26 Score=195.28 Aligned_cols=231 Identities=19% Similarity=0.318 Sum_probs=177.0
Q ss_pred CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC------------ceeeeccccccccEEEEEEcCCCCEEEEEe
Q 037555 55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS------------WKAMGRLQSHSLTVTQIRFSHDDNLLLSVS 122 (298)
Q Consensus 55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 122 (298)
+...|.+++.+|+|..+|+|+. ..|+.++||+.+. .+.+.++..|.+.|.|+.|+|||++||+|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq---~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS 88 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQ---VLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGS 88 (942)
T ss_pred CCeeEEEEEecCCceeEecCCc---cccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeecc
Confidence 3456999999999999999974 4688888999752 233455667999999999999999999999
Q ss_pred CCCeEEEEEeccCC-----------CCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeee
Q 037555 123 RDRQFSVFAIQRTG-----------TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQIL 191 (298)
Q Consensus 123 ~dg~i~iwd~~~~~-----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 191 (298)
.|+.|.+|...... .....++.+..+.+|...|..++|+|++.+|++++.|++|.+||.++.+.+.
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~--- 165 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK--- 165 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeee---
Confidence 99999999987311 1122467888999999999999999999999999999999999999987666
Q ss_pred ecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccc------------------cCCCCC--------
Q 037555 192 ALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDV------------------STPAPS-------- 245 (298)
Q Consensus 192 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~------------------~~~~~~-------- 245 (298)
.+.+|.+.|..+.|.|.| +||++-+.|++|+||++.+...... ..+...
T Consensus 166 vl~~H~s~VKGvs~DP~G-----ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~ 240 (942)
T KOG0973|consen 166 VLRGHQSLVKGVSWDPIG-----KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV 240 (942)
T ss_pred eeecccccccceEECCcc-----CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc
Confidence 788999999999999999 8999999999999999654211000 000000
Q ss_pred --Ccceeeee--------ccCCcccceEEEEEeecCC---CCC---CCcc----eEEEeeeCCCcEEEeEe
Q 037555 246 --TANIIIRF--------DPFACHVAAVNRMAWKTHE---KPK---NSRT----MQLASCGADNTVRVFQV 296 (298)
Q Consensus 246 --~~~~~~~~--------~~~~~~~~~v~~~~~~~~~---~~~---~~~~----~~l~s~~~d~~i~iw~~ 296 (298)
...++..+ ..+.+|..++..+.|+|.- +.. .... ..+|+|+.|++|.||..
T Consensus 241 n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T 311 (942)
T KOG0973|consen 241 NGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT 311 (942)
T ss_pred cCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEec
Confidence 00111111 1266899999999999831 100 1111 26889999999999975
No 96
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.3e-24 Score=162.38 Aligned_cols=237 Identities=12% Similarity=0.101 Sum_probs=179.9
Q ss_pred CCCCceeeeccCCCccccccc-----------CCCCceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcC
Q 037555 23 VPDAVPAVFTEPPIEDQLAWH-----------TLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVG 91 (298)
Q Consensus 23 ~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~ 91 (298)
-.+.+..+.|. +.++.+++. .--..++++..++..|..+.|......++.++. ..|.+|+..++.
T Consensus 13 ~~~~i~sl~fs-~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt---k~d~tIryLsl~ 88 (311)
T KOG1446|consen 13 TNGKINSLDFS-DDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST---KEDDTIRYLSLH 88 (311)
T ss_pred CCCceeEEEec-CCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC---CCCCceEEEEee
Confidence 34455566665 444444443 222357778888889999999877777777765 568999999999
Q ss_pred CceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee
Q 037555 92 SWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS 171 (298)
Q Consensus 92 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 171 (298)
+.+.++-|.+|...|.+++.+|-+..+++++.|++|++||++... +...+.. ..-..++|.|+|-++|++.
T Consensus 89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~-------cqg~l~~--~~~pi~AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK-------CQGLLNL--SGRPIAAFDPEGLIFALAN 159 (311)
T ss_pred cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCC-------CceEEec--CCCcceeECCCCcEEEEec
Confidence 999999999999999999999988999999999999999999632 2333322 2234578999999999999
Q ss_pred CCCeEEEEEccCC-cceeeeeecC-CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcce
Q 037555 172 RDKTVKIWAVENK-SSVKQILALP-PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANI 249 (298)
Q Consensus 172 ~dg~i~~wd~~~~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 249 (298)
..+.|++||+|.- +.......+. ......+.+.|+|+| ++|+.++..+.+++.|.-.+ ..
T Consensus 160 ~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG-----K~iLlsT~~s~~~~lDAf~G-------------~~ 221 (311)
T KOG1446|consen 160 GSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG-----KSILLSTNASFIYLLDAFDG-------------TV 221 (311)
T ss_pred CCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCC-----CEEEEEeCCCcEEEEEccCC-------------cE
Confidence 8889999999975 2222221222 346778999999999 78999999999999999887 44
Q ss_pred eeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 250 IIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 250 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
...+.....-..--.+.+|+||+ +++++|+.||+|.+|+++
T Consensus 222 ~~tfs~~~~~~~~~~~a~ftPds-------~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 222 KSTFSGYPNAGNLPLSATFTPDS-------KFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred eeeEeeccCCCCcceeEEECCCC-------cEEEEecCCCcEEEEEcC
Confidence 44444322222223678899999 899999999999999975
No 97
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.2e-27 Score=194.81 Aligned_cols=200 Identities=20% Similarity=0.442 Sum_probs=164.4
Q ss_pred ceEEEEEcC-CCCEEEeEeccCCCCceEEEEEEcCC---ceeeeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEe
Q 037555 58 ELFSLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGS---WKAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAI 132 (298)
Q Consensus 58 ~v~~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~ 132 (298)
.+..+.|.. +.++||+++ ..|.|.+||+.. .+.+..|..|+..++++.|++ ..++|++|+.||+|++||+
T Consensus 89 S~~DVkW~~~~~NlIAT~s-----~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~Dl 163 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCS-----TNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDL 163 (839)
T ss_pred ehhhcccccchhhhheeec-----CCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEee
Confidence 355667764 467889995 489999999986 455667889999999999998 5679999999999999999
Q ss_pred ccCCCCccceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecccc
Q 037555 133 QRTGTGEIDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQ 211 (298)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (298)
+.. .-...+......|..++|+| .+++|+++.+.|.+.+||+|...... ..+.+|.++|.++.|+|+.
T Consensus 164 R~~-------~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~--~k~~AH~GpV~c~nwhPnr-- 232 (839)
T KOG0269|consen 164 RSK-------KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCE--KKLTAHNGPVLCLNWHPNR-- 232 (839)
T ss_pred ecc-------cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHH--HHhhcccCceEEEeecCCC--
Confidence 974 33555566778899999999 67899999999999999999765432 3677899999999999977
Q ss_pred CCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeee--CCC
Q 037555 212 KNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCG--ADN 289 (298)
Q Consensus 212 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~--~d~ 289 (298)
.+||+|+.|+.|+|||+...+. ..+..+. ...+|..+.|-|..+ ..|++|+ .|-
T Consensus 233 ---~~lATGGRDK~vkiWd~t~~~~-----------~~~~tIn----Tiapv~rVkWRP~~~------~hLAtcsmv~dt 288 (839)
T KOG0269|consen 233 ---EWLATGGRDKMVKIWDMTDSRA-----------KPKHTIN----TIAPVGRVKWRPARS------YHLATCSMVVDT 288 (839)
T ss_pred ---ceeeecCCCccEEEEeccCCCc-----------cceeEEe----ecceeeeeeeccCcc------chhhhhhccccc
Confidence 8999999999999999986533 3333333 357899999999985 7888887 478
Q ss_pred cEEEeEec
Q 037555 290 TVRVFQVN 297 (298)
Q Consensus 290 ~i~iw~~~ 297 (298)
.|+|||++
T Consensus 289 sV~VWDvr 296 (839)
T KOG0269|consen 289 SVHVWDVR 296 (839)
T ss_pred eEEEEeec
Confidence 89999986
No 98
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.1e-24 Score=155.78 Aligned_cols=206 Identities=22% Similarity=0.301 Sum_probs=164.1
Q ss_pred EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee-----eeccccccccEEEEEEcCC----CCEEEE
Q 037555 50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA-----MGRLQSHSLTVTQIRFSHD----DNLLLS 120 (298)
Q Consensus 50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~-----~~~~~~~~~~v~~~~~~~~----~~~l~~ 120 (298)
+.-+.|++.|+|.+|+|+|.++++|+ .|.+|++..++...+ -..|.-|.+.|..++|..+ +.+|++
T Consensus 83 kr~khhkgsiyc~~ws~~geliatgs-----ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s 157 (350)
T KOG0641|consen 83 KRNKHHKGSIYCTAWSPCGELIATGS-----NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILAS 157 (350)
T ss_pred eeccccCccEEEEEecCccCeEEecC-----CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEe
Confidence 34457999999999999999999995 589999987653322 1336679999999999653 346666
Q ss_pred EeC-CCeEEEEEeccCCCCccceeeeEEeeccCCceEEE-EEccCCCEEEEeeCCCeEEEEEccCCcceeeeeec-CC--
Q 037555 121 VSR-DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC-SWNPFGHEFATGSRDKTVKIWAVENKSSVKQILAL-PP-- 195 (298)
Q Consensus 121 ~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-~~-- 195 (298)
++. |..|.+-|... +.....+.+|.+.|.++ .| ++-+|++|+.|.+|++||++-..++..+.+- +.
T Consensus 158 ~gagdc~iy~tdc~~-------g~~~~a~sghtghilalysw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~g 228 (350)
T KOG0641|consen 158 AGAGDCKIYITDCGR-------GQGFHALSGHTGHILALYSW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGG 228 (350)
T ss_pred cCCCcceEEEeecCC-------CCcceeecCCcccEEEEEEe--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCC
Confidence 543 66666667665 55678888999998876 44 4889999999999999999987776643221 11
Q ss_pred -CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCC
Q 037555 196 -FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKP 274 (298)
Q Consensus 196 -~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 274 (298)
..+.|.+++..|.+ .+|++|..|....+||++.+ ..+..+. .|...|.++.|+|..
T Consensus 229 lessavaav~vdpsg-----rll~sg~~dssc~lydirg~-------------r~iq~f~---phsadir~vrfsp~a-- 285 (350)
T KOG0641|consen 229 LESSAVAAVAVDPSG-----RLLASGHADSSCMLYDIRGG-------------RMIQRFH---PHSADIRCVRFSPGA-- 285 (350)
T ss_pred cccceeEEEEECCCc-----ceeeeccCCCceEEEEeeCC-------------ceeeeeC---CCccceeEEEeCCCc--
Confidence 12569999999999 79999999999999999988 5666655 599999999999998
Q ss_pred CCCcceEEEeeeCCCcEEEeEec
Q 037555 275 KNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 275 ~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.+|++|+.|..|++-|++
T Consensus 286 -----~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 286 -----HYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred -----eEEEEecccceEEEeecc
Confidence 999999999999998875
No 99
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=8.3e-27 Score=168.09 Aligned_cols=218 Identities=19% Similarity=0.280 Sum_probs=174.6
Q ss_pred eccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCc---eeeeccccccccEEEEEEcC--CCCEEEEEeCCCe
Q 037555 52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSW---KAMGRLQSHSLTVTQIRFSH--DDNLLLSVSRDRQ 126 (298)
Q Consensus 52 ~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~ 126 (298)
-..|.+.|..+...-.|++||+++. |++|+|+.++.. +.+..+.+|.++|..++|.. -|.+|++++.||.
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsS-----D~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgk 81 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSS-----DGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGK 81 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecC-----CccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCce
Confidence 3579999999998889999999965 999999998754 45778999999999999976 8999999999999
Q ss_pred EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCC--CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEE
Q 037555 127 FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG--HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALS 204 (298)
Q Consensus 127 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~ 204 (298)
|.||.-..+. .........|...|++++|.|.+ -.|+.++.||.|.+.+.+....-..-.....|.-.|++++
T Consensus 82 VIiWke~~g~-----w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVs 156 (299)
T KOG1332|consen 82 VIIWKEENGR-----WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVS 156 (299)
T ss_pred EEEEecCCCc-----hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceee
Confidence 9999987653 55566777899999999999954 6889999999999999987622221124457889999999
Q ss_pred Eeeccc---------cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCC
Q 037555 205 WVGLDR---------QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPK 275 (298)
Q Consensus 205 ~~~~~~---------~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 275 (298)
|.|... ...-..|++|+.|..|+||+..+.+- ..... +.+|...|..++|.|.-.
T Consensus 157 wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w-----------~~e~~---l~~H~dwVRDVAwaP~~g-- 220 (299)
T KOG1332|consen 157 WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSW-----------KLERT---LEGHKDWVRDVAWAPSVG-- 220 (299)
T ss_pred ecCcCCCccccccCcccccceeeccCCccceeeeecCCcch-----------hhhhh---hhhcchhhhhhhhccccC--
Confidence 999732 11125699999999999999987521 11111 668999999999999741
Q ss_pred CCcceEEEeeeCCCcEEEeEe
Q 037555 276 NSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 276 ~~~~~~l~s~~~d~~i~iw~~ 296 (298)
-....|++|+.||++.||-.
T Consensus 221 -l~~s~iAS~SqDg~viIwt~ 240 (299)
T KOG1332|consen 221 -LPKSTIASCSQDGTVIIWTK 240 (299)
T ss_pred -CCceeeEEecCCCcEEEEEe
Confidence 11268999999999999964
No 100
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=6.3e-25 Score=157.09 Aligned_cols=237 Identities=14% Similarity=0.235 Sum_probs=191.1
Q ss_pred cCCCCCceeeeccCCCcccccccCCCCc----------------eEEeccCCCceEEEEEcC----CCCEEEeEeccCCC
Q 037555 21 ESVPDAVPAVFTEPPIEDQLAWHTLWPE----------------SHKLYGHGNELFSLCCDH----QGKLVASSCKAQST 80 (298)
Q Consensus 21 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~h~~~v~~~~~s~----~~~~l~~~~~~~~~ 80 (298)
+.|.+.+++.+++ |.++.++++..-+. -..|.-|.+.|..++|-. .+.+|++++ .
T Consensus 86 khhkgsiyc~~ws-~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~g----a 160 (350)
T KOG0641|consen 86 KHHKGSIYCTAWS-PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAG----A 160 (350)
T ss_pred cccCccEEEEEec-CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecC----C
Confidence 5788899999999 77888888743221 234556889999999954 356788776 4
Q ss_pred CceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeec-------cCC
Q 037555 81 AAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEA-------HKR 153 (298)
Q Consensus 81 ~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-------~~~ 153 (298)
.|-.|++-|..+++..+.+.+|++.|.++- +-++-.+++|+.|.+|++||++.. ..+..+.. ...
T Consensus 161 gdc~iy~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~-------~~v~~l~~~~~~~gless 232 (350)
T KOG0641|consen 161 GDCKIYITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVN-------SCVNTLDNDFHDGGLESS 232 (350)
T ss_pred CcceEEEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeecc-------ceeeeccCcccCCCcccc
Confidence 588899999999999999999999998773 336889999999999999999873 23333321 236
Q ss_pred ceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555 154 IIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 154 ~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 233 (298)
.|.+++..|.|++|++|-.|....+||++.++.++ .+..|...|+++.|+|.. .++++++.|..|++-|+..
T Consensus 233 avaav~vdpsgrll~sg~~dssc~lydirg~r~iq---~f~phsadir~vrfsp~a-----~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 233 AVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQ---RFHPHSADIRCVRFSPGA-----HYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred eeEEEEECCCcceeeeccCCCceEEEEeeCCceee---eeCCCccceeEEEeCCCc-----eEEEEecccceEEEeeccc
Confidence 79999999999999999999999999999999888 778899999999999988 8999999999999999875
Q ss_pred cccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 234 NRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.-... -++.. ...|...+..+.|+|.. --+++.+.|.++.+|-++
T Consensus 305 dla~e---------l~~~v---v~ehkdk~i~~rwh~~d-------~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 305 DLAHE---------LPIMV---VAEHKDKAIQCRWHPQD-------FSFISSSADKTATLWALN 349 (350)
T ss_pred chhhc---------CceEE---EEeccCceEEEEecCcc-------ceeeeccCcceEEEeccC
Confidence 32111 11222 33588999999999998 789999999999999764
No 101
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=9.9e-27 Score=179.16 Aligned_cols=237 Identities=20% Similarity=0.255 Sum_probs=190.3
Q ss_pred cccccccCCCCCceeeeccCCCccccccc------CCCC-------ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCC
Q 037555 15 DGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-------ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTA 81 (298)
Q Consensus 15 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-------~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~ 81 (298)
.....+..|...|..+.|. +..+.++++ .+|+ .+.+|.|..++|+++.|.++++.+++++ .
T Consensus 166 ~~~~~ld~h~gev~~v~~l-~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas-----~ 239 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFL-RNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAAS-----N 239 (459)
T ss_pred hhhhhhhccccccceeEEc-cCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeec-----C
Confidence 3456678899999998888 454555555 4664 4677888999999999999999999884 5
Q ss_pred ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEc
Q 037555 82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN 161 (298)
Q Consensus 82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 161 (298)
|+.+++|++.+.+...++.+|++.|+++.|......+++|+.|.+|++||+.. ..+.+++. ....+..|+.+
T Consensus 240 d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k-------~~C~kt~l-~~S~cnDI~~~ 311 (459)
T KOG0288|consen 240 DKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK-------AYCSKTVL-PGSQCNDIVCS 311 (459)
T ss_pred CCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh-------hheecccc-ccccccceEec
Confidence 99999999999999999999999999999998777799999999999999987 34444433 23455666665
Q ss_pred cCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccC
Q 037555 162 PFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVST 241 (298)
Q Consensus 162 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 241 (298)
...+++|-.|++|++||++...... ..+ ..+.|+++..++++ ..+++++.|..+.++|+++..
T Consensus 312 --~~~~~SgH~DkkvRfwD~Rs~~~~~---sv~-~gg~vtSl~ls~~g-----~~lLsssRDdtl~viDlRt~e------ 374 (459)
T KOG0288|consen 312 --ISDVISGHFDKKVRFWDIRSADKTR---SVP-LGGRVTSLDLSMDG-----LELLSSSRDDTLKVIDLRTKE------ 374 (459)
T ss_pred --ceeeeecccccceEEEeccCCceee---Eee-cCcceeeEeeccCC-----eEEeeecCCCceeeeeccccc------
Confidence 5678899999999999999988776 444 44599999999998 678888999999999999863
Q ss_pred CCCCCcceeeeecc--CCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 242 PAPSTANIIIRFDP--FACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 242 ~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
....+.. +. -....+.+.|||++ .|+++||.||.|+||++.
T Consensus 375 -------I~~~~sA~g~k-~asDwtrvvfSpd~-------~YvaAGS~dgsv~iW~v~ 417 (459)
T KOG0288|consen 375 -------IRQTFSAEGFK-CASDWTRVVFSPDG-------SYVAAGSADGSVYIWSVF 417 (459)
T ss_pred -------EEEEeeccccc-cccccceeEECCCC-------ceeeeccCCCcEEEEEcc
Confidence 2222221 11 12338899999999 899999999999999974
No 102
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.5e-25 Score=167.64 Aligned_cols=221 Identities=17% Similarity=0.267 Sum_probs=165.7
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceee--eccc--cccccEEEEEEcCCCC-EEEEEeC
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAM--GRLQ--SHSLTVTQIRFSHDDN-LLLSVSR 123 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~--~~~~--~~~~~v~~~~~~~~~~-~l~~~~~ 123 (298)
+..|++|.+.|++++|+.||+.||+++ .|+.|++|+++..... +.++ -.-+..+.+.|.||-+ .++++..
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~-----~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~ 153 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATIS-----GDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKR 153 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEe-----CCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEcc
Confidence 567889999999999999999999995 4999999999753211 1111 1122457899999876 4555666
Q ss_pred CCeEEEEEeccCCCCccceeee-----EEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCC
Q 037555 124 DRQFSVFAIQRTGTGEIDYQLI-----ARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNS 198 (298)
Q Consensus 124 dg~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 198 (298)
...+++|.+.....+......+ ...+.|.-.+-.+-....+.+|++++.|..|.+|+++ ++.+. .+...+.
T Consensus 154 g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~---~idtnq~ 229 (420)
T KOG2096|consen 154 GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQ---SIDTNQS 229 (420)
T ss_pred CCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceee---eeccccc
Confidence 7789999887654432211111 1223455566667677778899999999999999999 66666 5555566
Q ss_pred ceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCc
Q 037555 199 SVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSR 278 (298)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 278 (298)
.-+..+.+|+| .++++++-...|++|.+--++.-.. +.+.+..++.+|...|..++|+++.
T Consensus 230 ~n~~aavSP~G-----RFia~~gFTpDVkVwE~~f~kdG~f--------qev~rvf~LkGH~saV~~~aFsn~S------ 290 (420)
T KOG2096|consen 230 SNYDAAVSPDG-----RFIAVSGFTPDVKVWEPIFTKDGTF--------QEVKRVFSLKGHQSAVLAAAFSNSS------ 290 (420)
T ss_pred cccceeeCCCC-----cEEEEecCCCCceEEEEEeccCcch--------hhhhhhheeccchhheeeeeeCCCc------
Confidence 67788999999 7999999999999999854432111 4445555688999999999999999
Q ss_pred ceEEEeeeCCCcEEEeEecC
Q 037555 279 TMQLASCGADNTVRVFQVNV 298 (298)
Q Consensus 279 ~~~l~s~~~d~~i~iw~~~~ 298 (298)
..++|.+.||++||||.++
T Consensus 291 -~r~vtvSkDG~wriwdtdV 309 (420)
T KOG2096|consen 291 -TRAVTVSKDGKWRIWDTDV 309 (420)
T ss_pred -ceeEEEecCCcEEEeeccc
Confidence 8999999999999999864
No 103
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.8e-27 Score=193.30 Aligned_cols=205 Identities=21% Similarity=0.374 Sum_probs=170.4
Q ss_pred EEeccCCCceEEEEEcCCC-CEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcC-CCCEEEEEeCCCeE
Q 037555 50 HKLYGHGNELFSLCCDHQG-KLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQF 127 (298)
Q Consensus 50 ~~~~~h~~~v~~~~~s~~~-~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 127 (298)
..|..|...|+++.|++.. .+|++| +.||.|++||++..+...++.+-...|.+++|+| .++.|+++...|.+
T Consensus 127 ~~f~EH~Rs~~~ldfh~tep~iliSG-----SQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~l 201 (839)
T KOG0269|consen 127 TVFNEHERSANKLDFHSTEPNILISG-----SQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYL 201 (839)
T ss_pred hHhhhhccceeeeeeccCCccEEEec-----CCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceE
Confidence 3677899999999999865 466777 5699999999999998889998899999999999 67899999999999
Q ss_pred EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555 128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG 207 (298)
Q Consensus 128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (298)
++||++.+ .+....+.+|.++|.++.|+|++.+||+|+.|+.|+|||+.+.+... +.++. ...++.++.|-|
T Consensus 202 qlWDlRqp------~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~-~~tIn-Tiapv~rVkWRP 273 (839)
T KOG0269|consen 202 QLWDLRQP------DRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKP-KHTIN-TIAPVGRVKWRP 273 (839)
T ss_pred EEeeccCc------hhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccc-eeEEe-ecceeeeeeecc
Confidence 99999986 45667788999999999999999999999999999999998655432 22333 457899999999
Q ss_pred ccccCCccEEEEee--cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEee
Q 037555 208 LDRQKNHGFLAVGM--ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASC 285 (298)
Q Consensus 208 ~~~~~~~~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~ 285 (298)
..+ ..|++++ .|..|+|||++-.. ..+..+..|...++.++|..... ..|.+|
T Consensus 274 ~~~----~hLAtcsmv~dtsV~VWDvrRPY---------------IP~~t~~eH~~~vt~i~W~~~d~------~~l~s~ 328 (839)
T KOG0269|consen 274 ARS----YHLATCSMVVDTSVHVWDVRRPY---------------IPYATFLEHTDSVTGIAWDSGDR------INLWSC 328 (839)
T ss_pred Ccc----chhhhhhccccceEEEEeecccc---------------ccceeeeccCccccceeccCCCc------eeeEee
Confidence 885 6777776 47899999998542 22333556999999999977332 789999
Q ss_pred eCCCcEE
Q 037555 286 GADNTVR 292 (298)
Q Consensus 286 ~~d~~i~ 292 (298)
+.||+|.
T Consensus 329 sKD~tv~ 335 (839)
T KOG0269|consen 329 SKDGTVL 335 (839)
T ss_pred cCccHHH
Confidence 9999874
No 104
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.4e-26 Score=187.77 Aligned_cols=213 Identities=16% Similarity=0.243 Sum_probs=182.4
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCc--eeeeccccccccEEEEEE-cCCCCEEEEEeCCC
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSW--KAMGRLQSHSLTVTQIRF-SHDDNLLLSVSRDR 125 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg 125 (298)
+..+..|.+.|+.+....+++.|++++. |.+|++|+...+ -+..++..|...|.|+++ .++..++++|+.|+
T Consensus 66 ~asme~HsDWVNDiiL~~~~~tlIS~Ss-----DtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~ 140 (735)
T KOG0308|consen 66 IASMEHHSDWVNDIILCGNGKTLISASS-----DTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDR 140 (735)
T ss_pred hhhhhhhHhHHhhHHhhcCCCceEEecC-----CceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCc
Confidence 5667789999999999999999999954 899999999877 567778899999999999 77888999999999
Q ss_pred eEEEEEeccCCCC---ccceeeeEEee-ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceE
Q 037555 126 QFSVFAIQRTGTG---EIDYQLIARQE-AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVT 201 (298)
Q Consensus 126 ~i~iwd~~~~~~~---~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~ 201 (298)
.|.+||+..+... .........+. ++...|++++.++.+..|++|+..+.|++||.++.+.+. .+.+|...|.
T Consensus 141 ~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kim---kLrGHTdNVr 217 (735)
T KOG0308|consen 141 KIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIM---KLRGHTDNVR 217 (735)
T ss_pred cEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccccccee---eeeccccceE
Confidence 9999999975320 00112223333 788899999999999999999999999999999998877 6679999999
Q ss_pred EEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceE
Q 037555 202 ALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQ 281 (298)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 281 (298)
.+..+++| ..+++++.||+|++||+... +++.. +..|...|+++..+|+- ..
T Consensus 218 ~ll~~dDG-----t~~ls~sSDgtIrlWdLgqQ-------------rCl~T---~~vH~e~VWaL~~~~sf-------~~ 269 (735)
T KOG0308|consen 218 VLLVNDDG-----TRLLSASSDGTIRLWDLGQQ-------------RCLAT---YIVHKEGVWALQSSPSF-------TH 269 (735)
T ss_pred EEEEcCCC-----CeEeecCCCceEEeeecccc-------------ceeee---EEeccCceEEEeeCCCc-------ce
Confidence 99999999 79999999999999999877 66666 44699999999999998 89
Q ss_pred EEeeeCCCcEEEeEec
Q 037555 282 LASCGADNTVRVFQVN 297 (298)
Q Consensus 282 l~s~~~d~~i~iw~~~ 297 (298)
+.+|+.||.|..=|++
T Consensus 270 vYsG~rd~~i~~Tdl~ 285 (735)
T KOG0308|consen 270 VYSGGRDGNIYRTDLR 285 (735)
T ss_pred EEecCCCCcEEecccC
Confidence 9999999999876654
No 105
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=3.2e-27 Score=193.49 Aligned_cols=227 Identities=22% Similarity=0.338 Sum_probs=188.5
Q ss_pred ccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEE
Q 037555 18 DTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIW 86 (298)
Q Consensus 18 ~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~ 86 (298)
..+..|...|.++... .....++.+ .||. .+..|++|..+|.++.|++...+|++| ..+|+|+
T Consensus 22 ~~~~~hsaav~~lk~~-~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaag-----sasgtiK 95 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIR-KSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAG-----SASGTIK 95 (825)
T ss_pred hhhhhhhhhhceeeee-ccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhccc-----ccCCcee
Confidence 4555666666655531 222222222 3453 245689999999999999999999999 5699999
Q ss_pred EEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCE
Q 037555 87 LWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHE 166 (298)
Q Consensus 87 vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 166 (298)
+||++..+.++++.+|...+..+.|+|-+.++++++.|+.+++||.+. ..+...+.+|...|..+.|+|+|++
T Consensus 96 ~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk-------~Gc~~~~~s~~~vv~~l~lsP~Gr~ 168 (825)
T KOG0267|consen 96 VWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRK-------KGCSHTYKSHTRVVDVLRLSPDGRW 168 (825)
T ss_pred eeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhc-------cCceeeecCCcceeEEEeecCCCce
Confidence 999999999999999999999999999999999999999999999997 5567888889999999999999999
Q ss_pred EEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCC
Q 037555 167 FATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPST 246 (298)
Q Consensus 167 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 246 (298)
++.++.|..+++||+..++... .+..|...+.++.|+|.. .++++|+.|+.|++||+++.
T Consensus 169 v~~g~ed~tvki~d~~agk~~~---ef~~~e~~v~sle~hp~e-----~Lla~Gs~d~tv~f~dletf------------ 228 (825)
T KOG0267|consen 169 VASGGEDNTVKIWDLTAGKLSK---EFKSHEGKVQSLEFHPLE-----VLLAPGSSDRTVRFWDLETF------------ 228 (825)
T ss_pred eeccCCcceeeeeccccccccc---ccccccccccccccCchh-----hhhccCCCCceeeeecccee------------
Confidence 9999999999999999998887 778899999999999988 68999999999999999875
Q ss_pred cceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCC
Q 037555 247 ANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD 288 (298)
Q Consensus 247 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d 288 (298)
..+.. .......|.+++|+|++ ..+++|..+
T Consensus 229 -e~I~s---~~~~~~~v~~~~fn~~~-------~~~~~G~q~ 259 (825)
T KOG0267|consen 229 -EVISS---GKPETDGVRSLAFNPDG-------KIVLSGEQI 259 (825)
T ss_pred -EEeec---cCCccCCceeeeecCCc-------eeeecCchh
Confidence 33333 23346789999999999 666666543
No 106
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=3.5e-25 Score=164.07 Aligned_cols=221 Identities=23% Similarity=0.335 Sum_probs=170.5
Q ss_pred eEEeccCCCceEEEEEcC-CCCEEEeEeccCCCCceEEEEEEcCCce----------eee-----ccccccccEEEEEEc
Q 037555 49 SHKLYGHGNELFSLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGSWK----------AMG-----RLQSHSLTVTQIRFS 112 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~~~~----------~~~-----~~~~~~~~v~~~~~~ 112 (298)
......|.+.|+++...+ .|+++++| +.||.|.+||++.-. .+. .-.+|.-.|.++.|-
T Consensus 36 ~d~~r~HgGsvNsL~id~tegrymlSG-----gadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~Wy 110 (397)
T KOG4283|consen 36 KDFVRPHGGSVNSLQIDLTEGRYMLSG-----GADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWY 110 (397)
T ss_pred cceeccCCCccceeeeccccceEEeec-----CCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEe
Confidence 344567999999999987 68899999 569999999997532 111 123688899999999
Q ss_pred C-CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC---CCEEEEeeCCCeEEEEEccCCccee
Q 037555 113 H-DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF---GHEFATGSRDKTVKIWAVENKSSVK 188 (298)
Q Consensus 113 ~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~wd~~~~~~~~ 188 (298)
| |.-.+.+++.|.++++||..+ .+....++ .++.|++-+++|- .-++|+|..|-.|++-|+..+....
T Consensus 111 P~DtGmFtssSFDhtlKVWDtnT-------lQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH 182 (397)
T KOG4283|consen 111 PIDTGMFTSSSFDHTLKVWDTNT-------LQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH 182 (397)
T ss_pred eecCceeecccccceEEEeeccc-------ceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee
Confidence 9 556888999999999999987 33333333 5677888889883 4578888899999999999998887
Q ss_pred eeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEe
Q 037555 189 QILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAW 268 (298)
Q Consensus 189 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 268 (298)
.+.+|...|.++.|+|... -+|++|+-||.|++||++............+. +....+.....|.+.|+.++|
T Consensus 183 ---~LsGHr~~vlaV~Wsp~~e----~vLatgsaDg~irlWDiRrasgcf~~lD~hn~-k~~p~~~~n~ah~gkvngla~ 254 (397)
T KOG4283|consen 183 ---TLSGHRDGVLAVEWSPSSE----WVLATGSADGAIRLWDIRRASGCFRVLDQHNT-KRPPILKTNTAHYGKVNGLAW 254 (397)
T ss_pred ---eeccccCceEEEEeccCce----eEEEecCCCceEEEEEeecccceeEEeecccC-ccCccccccccccceeeeeee
Confidence 8889999999999999885 78899999999999999864211110000000 111112224579999999999
Q ss_pred ecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 269 KTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 269 ~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
..++ .++++++.|..+++|+..
T Consensus 255 tSd~-------~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 255 TSDA-------RYLASCGTDDRIRVWNME 276 (397)
T ss_pred cccc-------hhhhhccCccceEEeecc
Confidence 9999 899999999999999863
No 107
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.5e-26 Score=186.31 Aligned_cols=206 Identities=18% Similarity=0.302 Sum_probs=169.1
Q ss_pred cCCCceE---EEEEc-CCCCEEEeEeccCCCCceEEEEEEcCCce------eeeccccccccEEEEEEcCCCCEEEEEeC
Q 037555 54 GHGNELF---SLCCD-HQGKLVASSCKAQSTAAAEIWLWEVGSWK------AMGRLQSHSLTVTQIRFSHDDNLLLSVSR 123 (298)
Q Consensus 54 ~h~~~v~---~~~~s-~~~~~l~~~~~~~~~~d~~i~vw~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 123 (298)
.|...|. ++..+ |.+++|.+||+ ||.|++|++.... .+..++.|...|..+....+++.|+++|.
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGR-----Dg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~Ss 93 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGR-----DGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASS 93 (735)
T ss_pred hccccccchhhccccCCCCceEEecCC-----CceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecC
Confidence 3445555 45554 46778999955 9999999985432 36678899999999999999999999999
Q ss_pred CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEE-ccCCCEEEEeeCCCeEEEEEccCCcc--ee-----eeeecC-
Q 037555 124 DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW-NPFGHEFATGSRDKTVKIWAVENKSS--VK-----QILALP- 194 (298)
Q Consensus 124 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~~wd~~~~~~--~~-----~~~~~~- 194 (298)
|-+|++|+..... .-+...+..|.+.|.+++. .++...+|+|+-|+.|.+||+.++.. .. ....+.
T Consensus 94 DtTVK~W~~~~~~-----~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~s 168 (735)
T KOG0308|consen 94 DTTVKVWNAHKDN-----TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGS 168 (735)
T ss_pred CceEEEeecccCc-----chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCC
Confidence 9999999998643 2456788899999999999 77888999999999999999997632 11 111223
Q ss_pred CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCC
Q 037555 195 PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKP 274 (298)
Q Consensus 195 ~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 274 (298)
++...|++++.++.+ ..+++|+.++.|++||.++. ..+.. +.+|...|..+..++||
T Consensus 169 G~k~siYSLA~N~t~-----t~ivsGgtek~lr~wDprt~-------------~kimk---LrGHTdNVr~ll~~dDG-- 225 (735)
T KOG0308|consen 169 GPKDSIYSLAMNQTG-----TIIVSGGTEKDLRLWDPRTC-------------KKIMK---LRGHTDNVRVLLVNDDG-- 225 (735)
T ss_pred CCccceeeeecCCcc-----eEEEecCcccceEEeccccc-------------cceee---eeccccceEEEEEcCCC--
Confidence 677889999999998 79999999999999999977 33333 56899999999999999
Q ss_pred CCCcceEEEeeeCCCcEEEeEec
Q 037555 275 KNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 275 ~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
..++++++||+|++|||.
T Consensus 226 -----t~~ls~sSDgtIrlWdLg 243 (735)
T KOG0308|consen 226 -----TRLLSASSDGTIRLWDLG 243 (735)
T ss_pred -----CeEeecCCCceEEeeecc
Confidence 899999999999999985
No 108
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.6e-25 Score=183.85 Aligned_cols=207 Identities=16% Similarity=0.292 Sum_probs=175.1
Q ss_pred eccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcC---CCCEEEEEeCCCeEE
Q 037555 52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH---DDNLLLSVSRDRQFS 128 (298)
Q Consensus 52 ~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~ 128 (298)
..+....+.+++.+|+|++||+| +.-|+|+||++.+.+....+..|+..|.|+.|+. ..++|++++.|..|+
T Consensus 455 ~~d~r~G~R~~~vSp~gqhLAsG-----Dr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIH 529 (1080)
T KOG1408|consen 455 TCDSRFGFRALAVSPDGQHLASG-----DRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIH 529 (1080)
T ss_pred hcCcccceEEEEECCCcceeccc-----CccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEE
Confidence 34566789999999999999999 5589999999999888888999999999999986 457899999999999
Q ss_pred EEEeccCCCCccceeeeEEeeccCC-------------------------------------------------ceEEEE
Q 037555 129 VFAIQRTGTGEIDYQLIARQEAHKR-------------------------------------------------IIWSCS 159 (298)
Q Consensus 129 iwd~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------~v~~~~ 159 (298)
+||+... ..+++++.+|.. .++.++
T Consensus 530 V~Dv~rn------y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~ 603 (1080)
T KOG1408|consen 530 VYDVKRN------YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMA 603 (1080)
T ss_pred EEecccc------cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEee
Confidence 9998653 222333333333 355666
Q ss_pred EccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccc
Q 037555 160 WNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDV 239 (298)
Q Consensus 160 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~ 239 (298)
..|...++++++.|..|+|||+.++++.+.+..-..+.+..-.+...|.+ .|+++.+.|.++.++|+.++
T Consensus 604 Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSg-----iY~atScsdktl~~~Df~sg----- 673 (1080)
T KOG1408|consen 604 VDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSG-----IYLATSCSDKTLCFVDFVSG----- 673 (1080)
T ss_pred eCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCc-----cEEEEeecCCceEEEEeccc-----
Confidence 67777889999999999999999999988665556677778889999999 79999999999999999998
Q ss_pred cCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 240 STPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+++.. +.+|...|+.+.|.+|. ..|++.+.||.|.+|.+.
T Consensus 674 --------EcvA~---m~GHsE~VTG~kF~nDC-------kHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 674 --------ECVAQ---MTGHSEAVTGVKFLNDC-------KHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred --------hhhhh---hcCcchheeeeeecccc-------hhheeecCCceEEEEECc
Confidence 56555 55899999999999999 899999999999999875
No 109
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=1.2e-25 Score=177.95 Aligned_cols=208 Identities=18% Similarity=0.261 Sum_probs=159.2
Q ss_pred EEeccCCCceEEEEEcCCCC-EEEeEeccCCCCceEEEEEEcCCceee-ecc-----ccccccEEEEEEcCCCCEEEEEe
Q 037555 50 HKLYGHGNELFSLCCDHQGK-LVASSCKAQSTAAAEIWLWEVGSWKAM-GRL-----QSHSLTVTQIRFSHDDNLLLSVS 122 (298)
Q Consensus 50 ~~~~~h~~~v~~~~~s~~~~-~l~~~~~~~~~~d~~i~vw~~~~~~~~-~~~-----~~~~~~v~~~~~~~~~~~l~~~~ 122 (298)
...+||...++|.+|+|..+ .++++ +.||++++|+++..+.. +.+ .+..-+++.++|++++++||+|.
T Consensus 262 ~nTKGHia~lt~g~whP~~k~~FlT~-----s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc 336 (641)
T KOG0772|consen 262 YNTKGHIAELTCGCWHPDNKEEFLTC-----SYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGC 336 (641)
T ss_pred hccCCceeeeeccccccCcccceEEe-----cCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcc
Confidence 33468999999999999654 66777 45999999999765432 222 23455789999999999999999
Q ss_pred CCCeEEEEEeccCCCCccceeeeEEeeccCC--ceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCce
Q 037555 123 RDRQFSVFAIQRTGTGEIDYQLIARQEAHKR--IIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSV 200 (298)
Q Consensus 123 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v 200 (298)
.||.|.+|+...... ......-..|.. .|+++.|+++|++|++-+.|+++++||+++.+.......--...-+-
T Consensus 337 ~DGSIQ~W~~~~~~v----~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~ 412 (641)
T KOG0772|consen 337 LDGSIQIWDKGSRTV----RPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPG 412 (641)
T ss_pred cCCceeeeecCCccc----ccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCC
Confidence 999999999754332 222344456766 89999999999999999999999999999876543221211234456
Q ss_pred EEEEEeeccccCCccEEEEeec------CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCC
Q 037555 201 TALSWVGLDRQKNHGFLAVGME------SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKP 274 (298)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~g~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 274 (298)
+.++|+|+. .+|++|.. .|.+.+||..+. ..+..+. -....|..+.|+|.-
T Consensus 413 tdc~FSPd~-----kli~TGtS~~~~~~~g~L~f~d~~t~-------------d~v~ki~---i~~aSvv~~~WhpkL-- 469 (641)
T KOG0772|consen 413 TDCCFSPDD-----KLILTGTSAPNGMTAGTLFFFDRMTL-------------DTVYKID---ISTASVVRCLWHPKL-- 469 (641)
T ss_pred CccccCCCc-----eEEEecccccCCCCCceEEEEeccce-------------eeEEEec---CCCceEEEEeecchh--
Confidence 889999998 79998864 578999998876 4444443 247889999999988
Q ss_pred CCCcceEEEeeeCCCcEEEe
Q 037555 275 KNSRTMQLASCGADNTVRVF 294 (298)
Q Consensus 275 ~~~~~~~l~s~~~d~~i~iw 294 (298)
+.|..++.||.+++|
T Consensus 470 -----NQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 470 -----NQIFAGSGDGTAHVY 484 (641)
T ss_pred -----hheeeecCCCceEEE
Confidence 788888889999986
No 110
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=6.4e-25 Score=179.34 Aligned_cols=238 Identities=16% Similarity=0.245 Sum_probs=185.2
Q ss_pred cceeeeecCccc--ccccCCCCCcee-eeccCCCcccccccC------CC-----CceEEeccCCCceEEEEEcCCCCEE
Q 037555 6 RETVERHGNDGL--DTLESVPDAVPA-VFTEPPIEDQLAWHT------LW-----PESHKLYGHGNELFSLCCDHQGKLV 71 (298)
Q Consensus 6 ~~~~~~~~~~~~--~~~~~~~~~v~~-~~~~~~~~~~~~~~~------~~-----~~~~~~~~h~~~v~~~~~s~~~~~l 71 (298)
.+.|+...++.+ +.+.+|.+-+.. +++.+.+...+..+. +| .+..+|++|+..|.|++...++. +
T Consensus 37 ~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~ 115 (745)
T KOG0301|consen 37 VKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-L 115 (745)
T ss_pred eeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-e
Confidence 344444444443 346677776655 444432222233331 22 35788999999999999888887 9
Q ss_pred EeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc
Q 037555 72 ASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH 151 (298)
Q Consensus 72 ~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 151 (298)
++|+. |.++++|.. +++...+++|+..|.+++.-|++ .+++|+.|.+|++|.-. ..++.+.+|
T Consensus 116 iSgSW-----D~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~---------~~l~tf~gH 178 (745)
T KOG0301|consen 116 ISGSW-----DSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG---------TLLKTFSGH 178 (745)
T ss_pred Eeccc-----ccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCC---------chhhhhccc
Confidence 99976 899999987 45666799999999999999987 89999999999999864 357888999
Q ss_pred CCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEe
Q 037555 152 KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSI 231 (298)
Q Consensus 152 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~ 231 (298)
.+.|+.+++-++. .|++++.||.|++|++ +++.+. ...+|...+.++...+.+ ..++++++|+++++|+.
T Consensus 179 tD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~---~~~ghtn~vYsis~~~~~-----~~Ivs~gEDrtlriW~~ 248 (745)
T KOG0301|consen 179 TDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLL---EMHGHTNFVYSISMALSD-----GLIVSTGEDRTLRIWKK 248 (745)
T ss_pred hhheeeeEEecCC-CeEeecCCceEEEEec-cCceee---eeeccceEEEEEEecCCC-----CeEEEecCCceEEEeec
Confidence 9999999999754 6899999999999999 566666 677899999999966666 69999999999999997
Q ss_pred eecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 232 SVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
. .+...+. .....|+++.+-+++ -+++|++||.||||..+
T Consensus 249 ~---------------e~~q~I~---lPttsiWsa~~L~Ng--------DIvvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 249 D---------------ECVQVIT---LPTTSIWSAKVLLNG--------DIVVGGSDGRVRVFTVD 288 (745)
T ss_pred C---------------ceEEEEe---cCccceEEEEEeeCC--------CEEEeccCceEEEEEec
Confidence 6 3333332 244589999999988 67888999999999753
No 111
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=5.1e-27 Score=192.38 Aligned_cols=205 Identities=21% Similarity=0.416 Sum_probs=185.2
Q ss_pred EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEE
Q 037555 50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSV 129 (298)
Q Consensus 50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 129 (298)
+.+..|...|.++..-..++.+++| +.|..+.+|.+.....+..+.+|..+|.++.|+++..+|++|+.+|+|++
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~G-----g~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~ 96 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTG-----GEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKV 96 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccC-----CCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceee
Confidence 4556789999999987788899999 45889999999877777789999999999999999999999999999999
Q ss_pred EEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecc
Q 037555 130 FAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLD 209 (298)
Q Consensus 130 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (298)
||+.. .+.++.+.+|...+..+.|+|-+.+++.|+.|+.+++||++...+.. .+.+|...+..+.|+|+|
T Consensus 97 wDlee-------Ak~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~---~~~s~~~vv~~l~lsP~G 166 (825)
T KOG0267|consen 97 WDLEE-------AKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSH---TYKSHTRVVDVLRLSPDG 166 (825)
T ss_pred eehhh-------hhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCcee---eecCCcceeEEEeecCCC
Confidence 99997 67788999999999999999999999999999999999999877777 677788999999999999
Q ss_pred ccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCC
Q 037555 210 RQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADN 289 (298)
Q Consensus 210 ~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~ 289 (298)
.+++.|++|..++|||...+ +.+.. +..|...+.++.|+|.. .++++||.|+
T Consensus 167 -----r~v~~g~ed~tvki~d~~ag-------------k~~~e---f~~~e~~v~sle~hp~e-------~Lla~Gs~d~ 218 (825)
T KOG0267|consen 167 -----RWVASGGEDNTVKIWDLTAG-------------KLSKE---FKSHEGKVQSLEFHPLE-------VLLAPGSSDR 218 (825)
T ss_pred -----ceeeccCCcceeeeeccccc-------------ccccc---cccccccccccccCchh-------hhhccCCCCc
Confidence 79999999999999999877 44444 56799999999999998 8999999999
Q ss_pred cEEEeEec
Q 037555 290 TVRVFQVN 297 (298)
Q Consensus 290 ~i~iw~~~ 297 (298)
++++||++
T Consensus 219 tv~f~dle 226 (825)
T KOG0267|consen 219 TVRFWDLE 226 (825)
T ss_pred eeeeeccc
Confidence 99999986
No 112
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=2e-24 Score=160.71 Aligned_cols=209 Identities=17% Similarity=0.218 Sum_probs=162.5
Q ss_pred CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccC
Q 037555 56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRT 135 (298)
Q Consensus 56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 135 (298)
.+.|.++.|+|.+..|++++. ||.+++|++........++ |..++.+++|.+ ...+++|+.||.|+.+|+.++
T Consensus 13 ~d~IS~v~f~~~~~~LLvssW-----DgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSW-----DGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred hhceeeEEEcCcCCcEEEEec-----cCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCC
Confidence 568999999999888888877 8999999999876666666 999999999986 568999999999999999964
Q ss_pred CCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCcc
Q 037555 136 GTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHG 215 (298)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (298)
. ...+..|..+|.++..++....+++|+.|++|++||.+...... .+. ....|.++.... +
T Consensus 86 ~--------~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~---~~d-~~kkVy~~~v~g-------~ 146 (323)
T KOG1036|consen 86 N--------EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVG---TFD-QGKKVYCMDVSG-------N 146 (323)
T ss_pred c--------ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccc---ccc-cCceEEEEeccC-------C
Confidence 3 44567799999999999988999999999999999999754444 333 345788887766 5
Q ss_pred EEEEeecCCcEEEEEeeecccccccCCCCC--Ccceeee------------------------------eccCCccc---
Q 037555 216 FLAVGMESGVIELWSISVNRTNDVSTPAPS--TANIIIR------------------------------FDPFACHV--- 260 (298)
Q Consensus 216 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~~------------------------------~~~~~~~~--- 260 (298)
.|++|+.+..|.+||+++...........- +.+++.. -..+++|.
T Consensus 147 ~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~ 226 (323)
T KOG1036|consen 147 RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSE 226 (323)
T ss_pred EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeeccc
Confidence 799999999999999997643321100000 0000000 00133443
Q ss_pred ------ceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 261 ------AAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 261 ------~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.+|++|+|+|-. ..|+|||.||.|.+||+.
T Consensus 227 ~~~~~~yPVNai~Fhp~~-------~tfaTgGsDG~V~~Wd~~ 262 (323)
T KOG1036|consen 227 KDTEIIYPVNAIAFHPIH-------GTFATGGSDGIVNIWDLF 262 (323)
T ss_pred CCceEEEEeceeEecccc-------ceEEecCCCceEEEccCc
Confidence 479999999988 799999999999999974
No 113
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=4.3e-25 Score=159.93 Aligned_cols=206 Identities=18% Similarity=0.247 Sum_probs=171.8
Q ss_pred cceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC------ceEEeccCCCceEEEEEcCCCCEEEe
Q 037555 6 RETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP------ESHKLYGHGNELFSLCCDHQGKLVAS 73 (298)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~------~~~~~~~h~~~v~~~~~s~~~~~l~~ 73 (298)
.+.|+.-+|..++.++ |...|..++|+ .+...+.++ ++++ +...+.+|.+.|..+.|....+.+++
T Consensus 83 akvw~a~tgdelhsf~-hkhivk~~af~-~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLS 160 (334)
T KOG0278|consen 83 AKVWDAVTGDELHSFE-HKHIVKAVAFS-QDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILS 160 (334)
T ss_pred hhhhhhhhhhhhhhhh-hhheeeeEEec-ccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEe
Confidence 4567788999998885 67788999998 556666665 2221 35667899999999999998888888
Q ss_pred EeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCC
Q 037555 74 SCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKR 153 (298)
Q Consensus 74 ~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 153 (298)
+ .+|++|++||.+++..++++. ...+|+++.++++|.+|.+ ...+.|.+||... ..+++..+ ...
T Consensus 161 S-----add~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTi-a~gssV~Fwdaks-------f~~lKs~k-~P~ 225 (334)
T KOG0278|consen 161 S-----ADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTI-AYGSSVKFWDAKS-------FGLLKSYK-MPC 225 (334)
T ss_pred e-----ccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEE-ecCceeEEecccc-------ccceeecc-Ccc
Confidence 8 459999999999999999887 6788999999999976555 4567899999987 55566554 356
Q ss_pred ceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555 154 IIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 154 ~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 233 (298)
.|.+...+|+...++.|+.|..++.||..+++.+... .++|.++|.|+.|+|++ ...++|++||+|++|.+..
T Consensus 226 nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~--nkgh~gpVhcVrFSPdG-----E~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 226 NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY--NKGHFGPVHCVRFSPDG-----ELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred ccccccccCCCceEEecCcceEEEEEeccCCceeeec--ccCCCCceEEEEECCCC-----ceeeccCCCceEEEEEecC
Confidence 7889999999999999999999999999999988731 36899999999999999 7999999999999999876
Q ss_pred cc
Q 037555 234 NR 235 (298)
Q Consensus 234 ~~ 235 (298)
.+
T Consensus 299 ~~ 300 (334)
T KOG0278|consen 299 GK 300 (334)
T ss_pred CC
Confidence 54
No 114
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.7e-25 Score=169.86 Aligned_cols=248 Identities=12% Similarity=0.231 Sum_probs=192.1
Q ss_pred cccccceeeeecCcccccccCCCCCceeeeccCCCccccccc-----CCCC----ceEEeccCCCceEEEEEcCCCCEEE
Q 037555 2 YAATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH-----TLWP----ESHKLYGHGNELFSLCCDHQGKLVA 72 (298)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~----~~~~~~~h~~~v~~~~~s~~~~~l~ 72 (298)
.++..+.|+...-+++..++.|.+.|.++.+.. +..+..+ +.|. +++++.+ ...+..+.-+..+..++
T Consensus 87 ~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg-~s~~~gIdh~~~~~~Fa 163 (433)
T KOG0268|consen 87 CDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILG-KSVYLGIDHHRKNSVFA 163 (433)
T ss_pred cCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeec-ccccccccccccccccc
Confidence 567788888888888999999998888887774 2222222 3554 5555543 34566777777777888
Q ss_pred eEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCC-CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc
Q 037555 73 SSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHD-DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH 151 (298)
Q Consensus 73 ~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 151 (298)
++| ..|.|||.+...++..+.-....|.++.|+|- ..+|++|+.|+.|.+||++... +++.+. -
T Consensus 164 TcG-------e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~-------Pl~KVi-~ 228 (433)
T KOG0268|consen 164 TCG-------EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQAS-------PLKKVI-L 228 (433)
T ss_pred ccC-------ceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCC-------ccceee-e
Confidence 884 47899999888889888877888999999994 4578888899999999999843 333322 1
Q ss_pred CCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEe
Q 037555 152 KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSI 231 (298)
Q Consensus 152 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~ 231 (298)
...-+.++|+|..-.|++++.|..++.||++...... ....+|.+.|.++.|+|.| .-+++|+.|.+|+||..
T Consensus 229 ~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~--~v~~dhvsAV~dVdfsptG-----~EfvsgsyDksIRIf~~ 301 (433)
T KOG0268|consen 229 TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL--NVHKDHVSAVMDVDFSPTG-----QEFVSGSYDKSIRIFPV 301 (433)
T ss_pred eccccceecCccccceeeccccccceehhhhhhcccc--hhhcccceeEEEeccCCCc-----chhccccccceEEEeec
Confidence 2345789999988889999999999999999765433 3566899999999999999 78999999999999999
Q ss_pred eecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 232 SVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
+.+..... + ....-..|.++.|+.|. .++++||.|+.|++|.-
T Consensus 302 ~~~~SRdi-------------Y--htkRMq~V~~Vk~S~Ds-------kyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 302 NHGHSRDI-------------Y--HTKRMQHVFCVKYSMDS-------KYIISGSDDGNVRLWKA 344 (433)
T ss_pred CCCcchhh-------------h--hHhhhheeeEEEEeccc-------cEEEecCCCcceeeeec
Confidence 87633221 1 11234579999999999 89999999999999974
No 115
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=7.5e-24 Score=176.46 Aligned_cols=278 Identities=14% Similarity=0.166 Sum_probs=208.8
Q ss_pred ccccceeeeecCcccccccCCCCCceeeeccCCCccccccc-----------CCCCceEEeccCCCceEEEEEcCCCCEE
Q 037555 3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH-----------TLWPESHKLYGHGNELFSLCCDHQGKLV 71 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~h~~~v~~~~~s~~~~~l 71 (298)
++..+.++..+++.+.++.++...|+++... |.-+.++-+ +.-..+.+|+.-.+.|++++|..||..+
T Consensus 181 ~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqs-PaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~ 259 (910)
T KOG1539|consen 181 QGRLQLWNVRTGKVVYTFQEFFSRITAIEQS-PALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPL 259 (910)
T ss_pred CCcEEEEEeccCcEEEEecccccceeEeccC-CcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCee
Confidence 5678899999999999999999999998877 544555444 2334566676556999999999999765
Q ss_pred EeEeccCCCCceEEEEEEcCCceeeeccc-cccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc----------
Q 037555 72 ASSCKAQSTAAAEIWLWEVGSWKAMGRLQ-SHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI---------- 140 (298)
Q Consensus 72 ~~~~~~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---------- 140 (298)
.+.+ ...|.+.+||++..+.+..+. .|.+.|....|.|....+++++.|..+++|-.+++...+.
T Consensus 260 las~----~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~ 335 (910)
T KOG1539|consen 260 LASG----RSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSA 335 (910)
T ss_pred EEec----cCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCC
Confidence 5443 347999999999877776665 7889999999999888999999999988886663221100
Q ss_pred --------------------------------------------------------------------------ce----
Q 037555 141 --------------------------------------------------------------------------DY---- 142 (298)
Q Consensus 141 --------------------------------------------------------------------------~~---- 142 (298)
.+
T Consensus 336 Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~ 415 (910)
T KOG1539|consen 336 PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVI 415 (910)
T ss_pred CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhccee
Confidence 00
Q ss_pred ----------------eee-------EEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCc
Q 037555 143 ----------------QLI-------ARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSS 199 (298)
Q Consensus 143 ----------------~~~-------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 199 (298)
... ..++.....+++++.++.|++.+.|+..|.|-+|++.++-....+..-+.|..+
T Consensus 416 ~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~ 495 (910)
T KOG1539|consen 416 TAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGE 495 (910)
T ss_pred EEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCc
Confidence 000 000112356889999999999999999999999999998777644333679999
Q ss_pred eEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCC-------------------------Ccceeeeec
Q 037555 200 VTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPS-------------------------TANIIIRFD 254 (298)
Q Consensus 200 v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-------------------------~~~~~~~~~ 254 (298)
|+.++....+ ..+++++.+|.+++||............+.. ...+.+...
T Consensus 496 V~gla~D~~n-----~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR 570 (910)
T KOG1539|consen 496 VTGLAVDGTN-----RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVR 570 (910)
T ss_pred eeEEEecCCC-----ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhH
Confidence 9999999888 7999999999999999987642211111110 001111223
Q ss_pred cCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 255 PFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 255 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
++.+|...|++++||||+ ++|++++.|++||+||+.
T Consensus 571 ~f~gh~nritd~~FS~Dg-------rWlisasmD~tIr~wDlp 606 (910)
T KOG1539|consen 571 EFWGHGNRITDMTFSPDG-------RWLISASMDSTIRTWDLP 606 (910)
T ss_pred HhhccccceeeeEeCCCC-------cEEEEeecCCcEEEEecc
Confidence 477899999999999999 899999999999999985
No 116
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=1e-24 Score=178.15 Aligned_cols=229 Identities=21% Similarity=0.351 Sum_probs=187.0
Q ss_pred ccccccCCCCCceeeeccCCCcccccc-----cCCC-------CceEEeccCCCceEE-EEEcC-CCCEEEeEeccCCCC
Q 037555 16 GLDTLESVPDAVPAVFTEPPIEDQLAW-----HTLW-------PESHKLYGHGNELFS-LCCDH-QGKLVASSCKAQSTA 81 (298)
Q Consensus 16 ~~~~~~~~~~~v~~~~~~~~~~~~~~~-----~~~~-------~~~~~~~~h~~~v~~-~~~s~-~~~~l~~~~~~~~~~ 81 (298)
.-+.+.+|...|..++...+. -.+.. .++| -+...+.+|.+-|.+ +++-+ ++-.+++|+ .
T Consensus 6 ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~-----~ 79 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGG-----M 79 (745)
T ss_pred eEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeec-----c
Confidence 346788999888776655332 11111 1344 345678888888887 88875 445688884 5
Q ss_pred ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEc
Q 037555 82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN 161 (298)
Q Consensus 82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 161 (298)
|..|.+|.....+++..+.+|...|.++....++. +++||.|.++++|.... +...+.+|...|++++.-
T Consensus 80 D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~---------l~~~l~gH~asVWAv~~l 149 (745)
T KOG0301|consen 80 DTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE---------LVYSLQGHTASVWAVASL 149 (745)
T ss_pred cceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchh---------hhcccCCcchheeeeeec
Confidence 99999999999999999999999999999887776 99999999999998754 455589999999999999
Q ss_pred cCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccC
Q 037555 162 PFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVST 241 (298)
Q Consensus 162 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 241 (298)
|++ .+++|+.|.+|++|.- ++.++ ++.+|..-|+.+++-+++ .+++++.||.|++|++. +
T Consensus 150 ~e~-~~vTgsaDKtIklWk~--~~~l~---tf~gHtD~VRgL~vl~~~------~flScsNDg~Ir~w~~~-g------- 209 (745)
T KOG0301|consen 150 PEN-TYVTGSADKTIKLWKG--GTLLK---TFSGHTDCVRGLAVLDDS------HFLSCSNDGSIRLWDLD-G------- 209 (745)
T ss_pred CCC-cEEeccCcceeeeccC--Cchhh---hhccchhheeeeEEecCC------CeEeecCCceEEEEecc-C-------
Confidence 987 8999999999999976 45555 888999999999999985 58999999999999994 3
Q ss_pred CCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 242 PAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
.++.. +.+|..-|.++...+++ ..++++|+|++++||+.
T Consensus 210 ------e~l~~---~~ghtn~vYsis~~~~~-------~~Ivs~gEDrtlriW~~ 248 (745)
T KOG0301|consen 210 ------EVLLE---MHGHTNFVYSISMALSD-------GLIVSTGEDRTLRIWKK 248 (745)
T ss_pred ------ceeee---eeccceEEEEEEecCCC-------CeEEEecCCceEEEeec
Confidence 44444 55799999999977776 79999999999999985
No 117
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=6.7e-25 Score=171.26 Aligned_cols=204 Identities=19% Similarity=0.313 Sum_probs=175.3
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceee----e-------------cc-ccccccEEEEE
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAM----G-------------RL-QSHSLTVTQIR 110 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~----~-------------~~-~~~~~~v~~~~ 110 (298)
+..+..|..+|.+++++|+.++.+++++ +++|.-|++.+++.. . .- ..|...+.+++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask-----~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~a 209 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASK-----DGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLA 209 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCC-----CcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEE
Confidence 5667789999999999999999999965 889999998776522 1 11 26888999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeee
Q 037555 111 FSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQI 190 (298)
Q Consensus 111 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 190 (298)
.++|+++|++|+.|..|.||+.++ ...++.+.+|.+.|.+++|-...+.+++++.|+.|++|++.....+.
T Consensus 210 vS~Dgkylatgg~d~~v~Iw~~~t-------~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ve-- 280 (479)
T KOG0299|consen 210 VSSDGKYLATGGRDRHVQIWDCDT-------LEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVE-- 280 (479)
T ss_pred EcCCCcEEEecCCCceEEEecCcc-------cchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHH--
Confidence 999999999999999999999998 66788899999999999999888899999999999999999888777
Q ss_pred eecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeec
Q 037555 191 LALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKT 270 (298)
Q Consensus 191 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 270 (298)
++.+|++.|.++.....+ ..+-+|+.|+++++|++.... +.+ +.+|.+.+-+++|-.
T Consensus 281 -tlyGHqd~v~~IdaL~re-----R~vtVGgrDrT~rlwKi~ees------------qli-----frg~~~sidcv~~In 337 (479)
T KOG0299|consen 281 -TLYGHQDGVLGIDALSRE-----RCVTVGGRDRTVRLWKIPEES------------QLI-----FRGGEGSIDCVAFIN 337 (479)
T ss_pred -HHhCCccceeeechhccc-----ceEEeccccceeEEEeccccc------------eee-----eeCCCCCeeeEEEec
Confidence 778999999999888776 567777799999999995431 111 447888999999988
Q ss_pred CCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 271 HEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 271 ~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+. .+++|+.||.|.+|++.
T Consensus 338 ~~--------HfvsGSdnG~IaLWs~~ 356 (479)
T KOG0299|consen 338 DE--------HFVSGSDNGSIALWSLL 356 (479)
T ss_pred cc--------ceeeccCCceEEEeeec
Confidence 75 89999999999999873
No 118
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=9.1e-25 Score=168.59 Aligned_cols=205 Identities=21% Similarity=0.280 Sum_probs=167.8
Q ss_pred ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCc---eeeeccccccccEEEEEEcCCCCEEEEEeCC
Q 037555 48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSW---KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD 124 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 124 (298)
+.+.+..|+++|.=+.||++|++||++++ |.+..+|.+... +...++.+|..+|.-+.|+||.+++++|+.|
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSk-----D~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~ 290 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASK-----DSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD 290 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccC-----CceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch
Confidence 46778899999999999999999999965 888999987543 3467788999999999999999999999999
Q ss_pred CeEEEEEeccCCCCccceeeeEEee-ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCC-CceEE
Q 037555 125 RQFSVFAIQRTGTGEIDYQLIARQE-AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFN-SSVTA 202 (298)
Q Consensus 125 g~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~-~~v~~ 202 (298)
..+.+||+.++. ....+. ++...+.+++|.||+..|++|+.|+.+..||+.... .. ...+.. ..|.+
T Consensus 291 e~~~lwDv~tgd-------~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~---~W~gvr~~~v~d 359 (519)
T KOG0293|consen 291 EVLSLWDVDTGD-------LRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LG---NWEGVRDPKVHD 359 (519)
T ss_pred HheeeccCCcch-------hhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hh---cccccccceeEE
Confidence 999999999853 222221 245778999999999999999999999999998543 23 333322 45899
Q ss_pred EEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEE
Q 037555 203 LSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQL 282 (298)
Q Consensus 203 ~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 282 (298)
++..++| .++++.+.|..|++|+..+.. ....+ .-..+|++++.|.++ .++
T Consensus 360 lait~Dg-----k~vl~v~~d~~i~l~~~e~~~-------------dr~li----se~~~its~~iS~d~-------k~~ 410 (519)
T KOG0293|consen 360 LAITYDG-----KYVLLVTVDKKIRLYNREARV-------------DRGLI----SEEQPITSFSISKDG-------KLA 410 (519)
T ss_pred EEEcCCC-----cEEEEEecccceeeechhhhh-------------hhccc----cccCceeEEEEcCCC-------cEE
Confidence 9999999 788888899999999987642 11111 246789999999999 788
Q ss_pred EeeeCCCcEEEeEec
Q 037555 283 ASCGADNTVRVFQVN 297 (298)
Q Consensus 283 ~s~~~d~~i~iw~~~ 297 (298)
++.=.+..+++||+.
T Consensus 411 LvnL~~qei~LWDl~ 425 (519)
T KOG0293|consen 411 LVNLQDQEIHLWDLE 425 (519)
T ss_pred EEEcccCeeEEeecc
Confidence 888899999999985
No 119
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.1e-23 Score=153.83 Aligned_cols=222 Identities=17% Similarity=0.342 Sum_probs=170.1
Q ss_pred ccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC----ceeeeccccccccEEEEEEcC--CCCEEEEEeCCCe
Q 037555 53 YGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS----WKAMGRLQSHSLTVTQIRFSH--DDNLLLSVSRDRQ 126 (298)
Q Consensus 53 ~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~ 126 (298)
.+|.+-|.++.|.+.|+.+|+|+ .|.+|+|||..+ ..+....+.|.+.|..+.|.+ -|+.+++++.|++
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCS-----sDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt 84 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCS-----SDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT 84 (361)
T ss_pred cCCcceeeeeeecccCceeeecc-----CCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence 47999999999999999999995 499999999643 345566789999999999976 5889999999999
Q ss_pred EEEEEeccCCCC--ccceeeeEEeeccCCceEEEEEcc--CCCEEEEeeCCCeEEEEEccCCccee------eeee----
Q 037555 127 FSVFAIQRTGTG--EIDYQLIARQEAHKRIIWSCSWNP--FGHEFATGSRDKTVKIWAVENKSSVK------QILA---- 192 (298)
Q Consensus 127 i~iwd~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~------~~~~---- 192 (298)
+.||.-...... ...+.....+......|+.+.|.| -|-.|++++.||.||||+......+. ++..
T Consensus 85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~p 164 (361)
T KOG2445|consen 85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDP 164 (361)
T ss_pred eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCC
Confidence 999986422211 123666777888889999999999 46789999999999999876533221 1111
Q ss_pred cCCCCCceEEEEEeeccccCCccEEEEeecC-----CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEE
Q 037555 193 LPPFNSSVTALSWVGLDRQKNHGFLAVGMES-----GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMA 267 (298)
Q Consensus 193 ~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 267 (298)
...+..+..|+.|+|... ...+|+.|+.+ +.++||...... +....+.++.+|..+|++|+
T Consensus 165 p~~~~~~~~CvsWn~sr~--~~p~iAvgs~e~a~~~~~~~Iye~~e~~------------rKw~kva~L~d~~dpI~di~ 230 (361)
T KOG2445|consen 165 PGKNKQPCFCVSWNPSRM--HEPLIAVGSDEDAPHLNKVKIYEYNENG------------RKWLKVAELPDHTDPIRDIS 230 (361)
T ss_pred cccccCcceEEeeccccc--cCceEEEEcccCCccccceEEEEecCCc------------ceeeeehhcCCCCCcceeee
Confidence 113456678999997642 23688888876 589999887552 34455566778999999999
Q ss_pred eecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 268 WKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 268 ~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
|.|+- ...-.+||+++.|| |+||.+.
T Consensus 231 wAPn~---Gr~y~~lAvA~kDg-v~I~~v~ 256 (361)
T KOG2445|consen 231 WAPNI---GRSYHLLAVATKDG-VRIFKVK 256 (361)
T ss_pred ecccc---CCceeeEEEeecCc-EEEEEEe
Confidence 99974 11236899999999 9999985
No 120
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=4.8e-24 Score=165.85 Aligned_cols=206 Identities=20% Similarity=0.343 Sum_probs=163.9
Q ss_pred ccCCCceEEEEEcCCC-CEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEE
Q 037555 53 YGHGNELFSLCCDHQG-KLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVF 130 (298)
Q Consensus 53 ~~h~~~v~~~~~s~~~-~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iw 130 (298)
.+|++.|.+++|+..- ..||+| +.|.+|++||+.++++..++..|...|.++.|+| ....|++|+.|+++.+.
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSg-----saD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~ 314 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASG-----SADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALK 314 (463)
T ss_pred ccchHHHHHHHhccccceeEEec-----CCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEee
Confidence 3799999999999864 467777 5699999999999999999999999999999999 56799999999999999
Q ss_pred EeccCCCCccceeeeEEeeccCCceEEEEEccCC-CEEEEeeCCCeEEEEEccCC-cceeeeeecCCCCCceEEEEEeec
Q 037555 131 AIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG-HEFATGSRDKTVKIWAVENK-SSVKQILALPPFNSSVTALSWVGL 208 (298)
Q Consensus 131 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~ 208 (298)
|.+..... -..+ ...+.|-.++|.|.. ..++++..||+|+-+|+|.. +++. +++.|..+|.++++++.
T Consensus 315 D~R~~~~s------~~~w-k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vw---t~~AHd~~ISgl~~n~~ 384 (463)
T KOG0270|consen 315 DCRDPSNS------GKEW-KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVW---TLKAHDDEISGLSVNIQ 384 (463)
T ss_pred eccCcccc------CceE-EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCcee---EEEeccCCcceEEecCC
Confidence 99964322 1122 245778999999954 67788889999999999987 4444 77889999999999998
Q ss_pred cccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCC
Q 037555 209 DRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD 288 (298)
Q Consensus 209 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d 288 (298)
.+ .++++++.|+.|++|++........ ..+.+ .-+...++++.|+-. ..|+.||..
T Consensus 385 ~p----~~l~t~s~d~~Vklw~~~~~~~~~v---------~~~~~-----~~~rl~c~~~~~~~a------~~la~GG~k 440 (463)
T KOG0270|consen 385 TP----GLLSTASTDKVVKLWKFDVDSPKSV---------KEHSF-----KLGRLHCFALDPDVA------FTLAFGGEK 440 (463)
T ss_pred CC----cceeeccccceEEEEeecCCCCccc---------ccccc-----cccceeecccCCCcc------eEEEecCcc
Confidence 76 8999999999999999976532110 00111 112366777777763 688999999
Q ss_pred CcEEEeEec
Q 037555 289 NTVRVFQVN 297 (298)
Q Consensus 289 ~~i~iw~~~ 297 (298)
+.++|||+.
T Consensus 441 ~~~~vwd~~ 449 (463)
T KOG0270|consen 441 AVLRVWDIF 449 (463)
T ss_pred ceEEEeecc
Confidence 999999974
No 121
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.1e-23 Score=155.31 Aligned_cols=202 Identities=15% Similarity=0.267 Sum_probs=150.2
Q ss_pred eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCC
Q 037555 59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTG 138 (298)
Q Consensus 59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 138 (298)
|-.+-...++.+|+++ +.|..|.+|++. |+.+..+......-+..+.+|+|+++++++.--.+++|.+--...+
T Consensus 190 ~i~iGiA~~~k~imsa-----s~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG 263 (420)
T KOG2096|consen 190 IINIGIAGNAKYIMSA-----SLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDG 263 (420)
T ss_pred eEEEeecCCceEEEEe-----cCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCc
Confidence 3334444445556666 458899999998 8888888776677788999999999999999999999998655443
Q ss_pred cc-ceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccC----Ccceeeeee----cCCCCCceEEEEEeecc
Q 037555 139 EI-DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVEN----KSSVKQILA----LPPFNSSVTALSWVGLD 209 (298)
Q Consensus 139 ~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~----~~~~~~~~~----~~~~~~~v~~~~~~~~~ 209 (298)
.. ....+..+++|...|..++|+++...+++.+.||++++||+.- ++....+.. +....+....+.++|.+
T Consensus 264 ~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g 343 (420)
T KOG2096|consen 264 TFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG 343 (420)
T ss_pred chhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC
Confidence 31 2345678899999999999999999999999999999999863 111111111 12233445689999998
Q ss_pred ccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCC
Q 037555 210 RQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADN 289 (298)
Q Consensus 210 ~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~ 289 (298)
..|+.+. ...|++|..+.++ ....+. ..|...|.+|+|+++| .+++||| |.
T Consensus 344 -----~~lA~s~-gs~l~~~~se~g~-------------~~~~~e--~~h~~~Is~is~~~~g-------~~~atcG-dr 394 (420)
T KOG2096|consen 344 -----DSLAVSF-GSDLKVFASEDGK-------------DYPELE--DIHSTTISSISYSSDG-------KYIATCG-DR 394 (420)
T ss_pred -----cEEEeec-CCceEEEEcccCc-------------cchhHH--HhhcCceeeEEecCCC-------cEEeeec-ce
Confidence 5666554 5679999988763 222222 2589999999999999 8999998 66
Q ss_pred cEEEeE
Q 037555 290 TVRVFQ 295 (298)
Q Consensus 290 ~i~iw~ 295 (298)
.+++..
T Consensus 395 ~vrv~~ 400 (420)
T KOG2096|consen 395 YVRVIR 400 (420)
T ss_pred eeeeec
Confidence 777653
No 122
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=2.2e-23 Score=154.82 Aligned_cols=225 Identities=15% Similarity=0.236 Sum_probs=166.1
Q ss_pred cccCCCCCceeeeccCCCcccccccCCCC-------ce-------EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceE
Q 037555 19 TLESVPDAVPAVFTEPPIEDQLAWHTLWP-------ES-------HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAE 84 (298)
Q Consensus 19 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------~~-------~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~ 84 (298)
.-....+.|..+.|+| ..+.++.+.-|+ .. +....|.++|.+++|+.+|..+++|+ .|+.
T Consensus 22 v~~pP~DsIS~l~FSP-~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~-----~Dk~ 95 (347)
T KOG0647|consen 22 VPNPPEDSISALAFSP-QADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGG-----CDKQ 95 (347)
T ss_pred cCCCcccchheeEecc-ccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeec-----cCCc
Confidence 3345567899999996 444555443343 21 22346899999999999999999995 5999
Q ss_pred EEEEEcCCceeeeccccccccEEEEEEcCCCC--EEEEEeCCCeEEEEEeccCCCCcc----------------------
Q 037555 85 IWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDN--LLLSVSRDRQFSVFAIQRTGTGEI---------------------- 140 (298)
Q Consensus 85 i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~---------------------- 140 (298)
+++||+.+++. .++..|..+|..+.|-+... .|++|+.|.+|++||.+.......
T Consensus 96 ~k~wDL~S~Q~-~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata 174 (347)
T KOG0647|consen 96 AKLWDLASGQV-SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATA 174 (347)
T ss_pred eEEEEccCCCe-eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEec
Confidence 99999999854 55777999999999988655 899999999999999986542110
Q ss_pred -ceeeeEEe-------ec----cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCC---------Cc
Q 037555 141 -DYQLIARQ-------EA----HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFN---------SS 199 (298)
Q Consensus 141 -~~~~~~~~-------~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~---------~~ 199 (298)
..-.+..+ +. -.-.+++++..++...++.|+-+|++.+..+..+.+...+ .+..|. ..
T Consensus 175 ~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nF-tFkCHR~~~~~~~~VYa 253 (347)
T KOG0647|consen 175 ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNF-TFKCHRSTNSVNDDVYA 253 (347)
T ss_pred CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCce-eEEEeccCCCCCCceEE
Confidence 00001111 11 1235789999998888899999999999999876332211 344443 25
Q ss_pred eEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555 200 VTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE 272 (298)
Q Consensus 200 v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 272 (298)
|.+++|+|.. ..|++.+.||.+.+||-... .. +.....|..+|++.+|+.+|
T Consensus 254 VNsi~FhP~h-----gtlvTaGsDGtf~FWDkdar-------------~k---Lk~s~~~~qpItcc~fn~~G 305 (347)
T KOG0647|consen 254 VNSIAFHPVH-----GTLVTAGSDGTFSFWDKDAR-------------TK---LKTSETHPQPITCCSFNRNG 305 (347)
T ss_pred ecceEeeccc-----ceEEEecCCceEEEecchhh-------------hh---hhccCcCCCccceeEecCCC
Confidence 7899999987 79999999999999998654 22 22255699999999999999
No 123
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=1.2e-23 Score=164.25 Aligned_cols=212 Identities=17% Similarity=0.193 Sum_probs=166.3
Q ss_pred EEeccCCCceEEEEEcCCCC--EEEeEeccCCCCceEEEEEEcCCce----eeeccccccccEEEEEEcC-CCCEEEEEe
Q 037555 50 HKLYGHGNELFSLCCDHQGK--LVASSCKAQSTAAAEIWLWEVGSWK----AMGRLQSHSLTVTQIRFSH-DDNLLLSVS 122 (298)
Q Consensus 50 ~~~~~h~~~v~~~~~s~~~~--~l~~~~~~~~~~d~~i~vw~~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 122 (298)
...+-+.+.|++++|+|... ++|+| +..|+|-+||+.+.+ -+..+..|..+|.++.|+| +...+++.+
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~G-----dK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS 254 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVG-----DKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS 254 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEc-----cCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeec
Confidence 44556889999999999654 66777 458999999995332 2345778999999999999 556899999
Q ss_pred CCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEE
Q 037555 123 RDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTA 202 (298)
Q Consensus 123 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~ 202 (298)
.||+|++-|++... ...+..+......+..+.|+.+...++.+..=|...+||+++...... .+..|...|++
T Consensus 255 yDGtiR~~D~~~~i-----~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~--~~~lh~kKI~s 327 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNI-----SEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYE--NLRLHKKKITS 327 (498)
T ss_pred cCceeeeeeecchh-----hHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccch--hhhhhhcccce
Confidence 99999999998643 223333333455677888888888888888878999999998775321 44457779999
Q ss_pred EEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEE
Q 037555 203 LSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQL 282 (298)
Q Consensus 203 ~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 282 (298)
++++|..+ .+|++++.|++.+|||++.-..... + .+. ...|...|.+..|||.+ ..|
T Consensus 328 v~~NP~~p----~~laT~s~D~T~kIWD~R~l~~K~s---------p--~ls-t~~HrrsV~sAyFSPs~-------gtl 384 (498)
T KOG4328|consen 328 VALNPVCP----WFLATASLDQTAKIWDLRQLRGKAS---------P--FLS-TLPHRRSVNSAYFSPSG-------GTL 384 (498)
T ss_pred eecCCCCc----hheeecccCcceeeeehhhhcCCCC---------c--cee-cccccceeeeeEEcCCC-------Cce
Confidence 99999987 8999999999999999987533211 1 122 34599999999999998 569
Q ss_pred EeeeCCCcEEEeEe
Q 037555 283 ASCGADNTVRVFQV 296 (298)
Q Consensus 283 ~s~~~d~~i~iw~~ 296 (298)
+|.+.|+.|+|||.
T Consensus 385 ~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 385 LTTCQDNEIRVFDS 398 (498)
T ss_pred EeeccCCceEEeec
Confidence 99999999999996
No 124
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.6e-23 Score=170.09 Aligned_cols=193 Identities=22% Similarity=0.324 Sum_probs=162.1
Q ss_pred EEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCc
Q 037555 60 FSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGE 139 (298)
Q Consensus 60 ~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 139 (298)
.-++|+ ....||+|. ...|++|+..+++.......+...|+++.|+++|.+|++|..+|.|.|||...
T Consensus 181 nlldWs-s~n~laVal------g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~----- 248 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVAL------GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE----- 248 (484)
T ss_pred hHhhcc-cCCeEEEEe------cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhh-----
Confidence 345677 455677773 46899999998886665555589999999999999999999999999999987
Q ss_pred cceeeeEEeec-cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEE
Q 037555 140 IDYQLIARQEA-HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLA 218 (298)
Q Consensus 140 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~ 218 (298)
.+.+..+.. |...|-+++|. +..+.+|+.|+.|..+|++..+.... .+.+|...|..+.|++++ .+++
T Consensus 249 --~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~-----~~lA 317 (484)
T KOG0305|consen 249 --QKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDG-----NQLA 317 (484)
T ss_pred --ccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCC-----Ceec
Confidence 445666666 89999999998 77899999999999999998887663 377899999999999999 8999
Q ss_pred EeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeee--CCCcEEEeEe
Q 037555 219 VGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCG--ADNTVRVFQV 296 (298)
Q Consensus 219 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~--~d~~i~iw~~ 296 (298)
+|+.|+.+.|||.... .+... +..|.+.|..++|+|-.. .+||+|+ .|++|++||.
T Consensus 318 SGgnDN~~~Iwd~~~~-------------~p~~~---~~~H~aAVKA~awcP~q~------~lLAsGGGs~D~~i~fwn~ 375 (484)
T KOG0305|consen 318 SGGNDNVVFIWDGLSP-------------EPKFT---FTEHTAAVKALAWCPWQS------GLLATGGGSADRCIKFWNT 375 (484)
T ss_pred cCCCccceEeccCCCc-------------cccEE---EeccceeeeEeeeCCCcc------CceEEcCCCcccEEEEEEc
Confidence 9999999999999554 34444 345999999999999764 7899886 6999999997
Q ss_pred c
Q 037555 297 N 297 (298)
Q Consensus 297 ~ 297 (298)
.
T Consensus 376 ~ 376 (484)
T KOG0305|consen 376 N 376 (484)
T ss_pred C
Confidence 4
No 125
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=7.9e-23 Score=172.09 Aligned_cols=236 Identities=15% Similarity=0.240 Sum_probs=186.9
Q ss_pred cCCCCCceeeeccCCCccccccc------CCCCc------eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEE
Q 037555 21 ESVPDAVPAVFTEPPIEDQLAWH------TLWPE------SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLW 88 (298)
Q Consensus 21 ~~~~~~v~~~~~~~~~~~~~~~~------~~~~~------~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw 88 (298)
..|.+....+++. |.++++.+. +.|.. -.++.-+...|.+++.. +.+|+++ ..+++|.+|
T Consensus 10 yaht~G~t~i~~d-~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~-----s~~~tv~~y 81 (933)
T KOG1274|consen 10 YAHTGGLTLICYD-PDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTG-----SEQNTVLRY 81 (933)
T ss_pred hhccCceEEEEEc-CCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEe-----eccceEEEe
Confidence 4677777778887 555566655 33422 12222367778888764 4488888 459999999
Q ss_pred EcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEE
Q 037555 89 EVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFA 168 (298)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 168 (298)
.+.+++.-..+...+-++.+++|+.+|++++.|+.|-.|++.++.. ....+.+.+|..+|.++.|+|.+++||
T Consensus 82 ~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D-------~s~~~~lrgh~apVl~l~~~p~~~fLA 154 (933)
T KOG1274|consen 82 KFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDD-------SSQEKVLRGHDAPVLQLSYDPKGNFLA 154 (933)
T ss_pred eCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccc-------cchheeecccCCceeeeeEcCCCCEEE
Confidence 9999887767777888999999999999999999999999999987 556788899999999999999999999
Q ss_pred EeeCCCeEEEEEccCCcceeeeeecCCC-----CCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCC
Q 037555 169 TGSRDKTVKIWAVENKSSVKQILALPPF-----NSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPA 243 (298)
Q Consensus 169 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 243 (298)
+.+-||.|++||+.++.....+..+... ...+..++|+|.+ ..++....|+.|++|+....
T Consensus 155 vss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~-----g~la~~~~d~~Vkvy~r~~w--------- 220 (933)
T KOG1274|consen 155 VSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG-----GTLAVPPVDNTVKVYSRKGW--------- 220 (933)
T ss_pred EEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCC-----CeEEeeccCCeEEEEccCCc---------
Confidence 9999999999999988776643332211 3456789999998 57777788999999999876
Q ss_pred CCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 244 PSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.....+. ...+...+..+.|+|+| .|||+++.||.|.|||.+
T Consensus 221 ----e~~f~Lr-~~~~ss~~~~~~wsPnG-------~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 221 ----ELQFKLR-DKLSSSKFSDLQWSPNG-------KYIAASTLDGQILVWNVD 262 (933)
T ss_pred ----eeheeec-ccccccceEEEEEcCCC-------cEEeeeccCCcEEEEecc
Confidence 3333333 22345559999999999 899999999999999975
No 126
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.91 E-value=6.4e-23 Score=151.65 Aligned_cols=253 Identities=17% Similarity=0.217 Sum_probs=181.8
Q ss_pred ccccCCCCCceeeeccCCCccccccc-------------CCCC--------------ceEEec-cCCCceEEEEEcCCCC
Q 037555 18 DTLESVPDAVPAVFTEPPIEDQLAWH-------------TLWP--------------ESHKLY-GHGNELFSLCCDHQGK 69 (298)
Q Consensus 18 ~~~~~~~~~v~~~~~~~~~~~~~~~~-------------~~~~--------------~~~~~~-~h~~~v~~~~~s~~~~ 69 (298)
.+|..|.+.|..++..|.+...+++. .+|. ++..|. .+-+.|.|+.|.|++.
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~ 136 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSD 136 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCC
Confidence 34566777787777775554444332 3452 233333 4556899999999999
Q ss_pred EEEeEeccCCCCceEEEEEEcCCcee-eecc-----ccccccEEEEEEcC--CCCEEEEEeCCCeEEEEEeccCCCCccc
Q 037555 70 LVASSCKAQSTAAAEIWLWEVGSWKA-MGRL-----QSHSLTVTQIRFSH--DDNLLLSVSRDRQFSVFAIQRTGTGEID 141 (298)
Q Consensus 70 ~l~~~~~~~~~~d~~i~vw~~~~~~~-~~~~-----~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 141 (298)
.+++- .|..|.+|+++.+.. +..+ ..+....++-+|+| +++.+++.+ |+++..||+++.
T Consensus 137 klasm------~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~------ 203 (370)
T KOG1007|consen 137 KLASM------DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTM------ 203 (370)
T ss_pred eeEEe------ccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccch------
Confidence 99987 388999999987654 3322 23566788899999 777776655 899999999974
Q ss_pred eeeeEEeeccCCceEEEEEccCC-CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEe
Q 037555 142 YQLIARQEAHKRIIWSCSWNPFG-HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVG 220 (298)
Q Consensus 142 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g 220 (298)
.+....-..|...|..+.|+|+. .+|++|++||.|++||.|..+. .+..+++|...|.++.|+|... ++|++|
T Consensus 204 ~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~--pv~el~~HsHWvW~VRfn~~hd----qLiLs~ 277 (370)
T KOG1007|consen 204 KKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF--PVQELPGHSHWVWAVRFNPEHD----QLILSG 277 (370)
T ss_pred hhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc--cccccCCCceEEEEEEecCccc----eEEEec
Confidence 23344456788899999999965 5788999999999999987553 3347889999999999999875 899999
Q ss_pred ecCCcEEEEEeeecccccccC--------CCCCCcce---e--eeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC
Q 037555 221 MESGVIELWSISVNRTNDVST--------PAPSTANI---I--IRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA 287 (298)
Q Consensus 221 ~~dg~i~vwd~~~~~~~~~~~--------~~~~~~~~---~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~ 287 (298)
+.|..|.+|....-....... ......+. + ..+..+..|...|.+++|+...+ ..+++-+.
T Consensus 278 ~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP------WiFASLSY 351 (370)
T KOG1007|consen 278 GSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP------WIFASLSY 351 (370)
T ss_pred CCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC------eeEEEecc
Confidence 999999999876532111100 00000011 1 11233567999999999998764 78899999
Q ss_pred CCcEEEeE
Q 037555 288 DNTVRVFQ 295 (298)
Q Consensus 288 d~~i~iw~ 295 (298)
||.+.|=.
T Consensus 352 DGRviIs~ 359 (370)
T KOG1007|consen 352 DGRVIISS 359 (370)
T ss_pred CceEEeec
Confidence 99987744
No 127
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.91 E-value=7.6e-23 Score=151.38 Aligned_cols=209 Identities=19% Similarity=0.323 Sum_probs=165.7
Q ss_pred ccCCCceEEEEEcCCC-----CEEEeEeccCCCCceEEEEEEcCC--cee--eecc-----ccccccEEEEEEcC-CCCE
Q 037555 53 YGHGNELFSLCCDHQG-----KLVASSCKAQSTAAAEIWLWEVGS--WKA--MGRL-----QSHSLTVTQIRFSH-DDNL 117 (298)
Q Consensus 53 ~~h~~~v~~~~~s~~~-----~~l~~~~~~~~~~d~~i~vw~~~~--~~~--~~~~-----~~~~~~v~~~~~~~-~~~~ 117 (298)
..|..+++.+.|.|+. .+||++ +-.+++|.+.. .+. ...+ ..+..+++++.|+. +.++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs-------~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~ 165 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATS-------SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNL 165 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcc-------cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcce
Confidence 3689999999999976 367777 45799999873 221 1111 23677999999987 7789
Q ss_pred EEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCC-CEEEEeeCCCeEEEEEccCCcceeeeeecCCC
Q 037555 118 LLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG-HEFATGSRDKTVKIWAVENKSSVKQILALPPF 196 (298)
Q Consensus 118 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 196 (298)
|.+++-|-+..|||++.+.. ......+-.|..+|..++|...+ +.||+++.||.||+||+|..+....+..-+..
T Consensus 166 igtSSiDTTCTiWdie~~~~----~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~ 241 (364)
T KOG0290|consen 166 IGTSSIDTTCTIWDIETGVS----GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSP 241 (364)
T ss_pred eEeecccCeEEEEEEeeccc----cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCC
Confidence 99999999999999998522 34566778999999999999854 68999999999999999987765544343333
Q ss_pred CCceEEEEEeeccccCCccEEEEeecC-CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCC
Q 037555 197 NSSVTALSWVGLDRQKNHGFLAVGMES-GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPK 275 (298)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~l~~g~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 275 (298)
..+...++|++..+ +++++-..| ..|.|.|++... ..+..+.+|.+.|+.++|.|...
T Consensus 242 ~~pLlRLswnkqDp----nymATf~~dS~~V~iLDiR~P~---------------tpva~L~~H~a~VNgIaWaPhS~-- 300 (364)
T KOG0290|consen 242 STPLLRLSWNKQDP----NYMATFAMDSNKVVILDIRVPC---------------TPVARLRNHQASVNGIAWAPHSS-- 300 (364)
T ss_pred CCcceeeccCcCCc----hHHhhhhcCCceEEEEEecCCC---------------cceehhhcCcccccceEecCCCC--
Confidence 56788999999886 788876654 579999998542 23334778999999999999875
Q ss_pred CCcceEEEeeeCCCcEEEeEec
Q 037555 276 NSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 276 ~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
..|+|||.|..+.+||++
T Consensus 301 ----~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 301 ----SHICTAGDDCQALIWDLQ 318 (364)
T ss_pred ----ceeeecCCcceEEEEecc
Confidence 899999999999999986
No 128
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.3e-23 Score=163.44 Aligned_cols=199 Identities=17% Similarity=0.292 Sum_probs=159.6
Q ss_pred eEEEEEcC-------CCCEEEeEeccCCCCceEEEEEEcCCcee---------------------eeccccccccEEEEE
Q 037555 59 LFSLCCDH-------QGKLVASSCKAQSTAAAEIWLWEVGSWKA---------------------MGRLQSHSLTVTQIR 110 (298)
Q Consensus 59 v~~~~~s~-------~~~~l~~~~~~~~~~d~~i~vw~~~~~~~---------------------~~~~~~~~~~v~~~~ 110 (298)
..|++|.. .|+++|.|. .+..|.|||+.=... -..-.+|+..|.++.
T Consensus 176 PLC~ewld~~~~~~~~gNyvAiGt-----mdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls 250 (463)
T KOG0270|consen 176 PLCIEWLDHGSKSGGAGNYVAIGT-----MDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALS 250 (463)
T ss_pred chhhhhhhcCCCCCCCcceEEEec-----cCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHH
Confidence 45777743 367999995 488999999852110 011236899999999
Q ss_pred EcCC-CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCccee
Q 037555 111 FSHD-DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVK 188 (298)
Q Consensus 111 ~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~ 188 (298)
|+.. .+.|++||.|.+|++||+.+ .++...+..|...|.++.|+| ....|++|+.|++|.+.|.|......
T Consensus 251 ~n~~~~nVLaSgsaD~TV~lWD~~~-------g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~ 323 (463)
T KOG0270|consen 251 WNRNFRNVLASGSADKTVKLWDVDT-------GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG 323 (463)
T ss_pred hccccceeEEecCCCceEEEEEcCC-------CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC
Confidence 9874 46899999999999999998 667778888999999999999 55899999999999999999643332
Q ss_pred eeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEe
Q 037555 189 QILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAW 268 (298)
Q Consensus 189 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 268 (298)
. .++ ..+.|-.++|.|... ..++++..||.|+-+|+|+.. +++.. ..+|..+|.+|++
T Consensus 324 ~--~wk-~~g~VEkv~w~~~se----~~f~~~tddG~v~~~D~R~~~------------~~vwt---~~AHd~~ISgl~~ 381 (463)
T KOG0270|consen 324 K--EWK-FDGEVEKVAWDPHSE----NSFFVSTDDGTVYYFDIRNPG------------KPVWT---LKAHDDEISGLSV 381 (463)
T ss_pred c--eEE-eccceEEEEecCCCc----eeEEEecCCceEEeeecCCCC------------CceeE---EEeccCCcceEEe
Confidence 1 222 567899999999886 788899999999999999753 44444 4579999999999
Q ss_pred ecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 269 KTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 269 ~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
++..+ .+|+|++.|+.|++|++.
T Consensus 382 n~~~p------~~l~t~s~d~~Vklw~~~ 404 (463)
T KOG0270|consen 382 NIQTP------GLLSTASTDKVVKLWKFD 404 (463)
T ss_pred cCCCC------cceeeccccceEEEEeec
Confidence 99875 899999999999999985
No 129
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=1.7e-23 Score=165.51 Aligned_cols=230 Identities=19% Similarity=0.279 Sum_probs=182.9
Q ss_pred CCCCCceeeeccCCCccccccc-----CCCCc--------eEEec--cCCCceEEEEEcCCCCEEEeEeccCCCCceEEE
Q 037555 22 SVPDAVPAVFTEPPIEDQLAWH-----TLWPE--------SHKLY--GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIW 86 (298)
Q Consensus 22 ~~~~~v~~~~~~~~~~~~~~~~-----~~~~~--------~~~~~--~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~ 86 (298)
.|...|..+..+.+. .++.++ ++|+. +..|. .-.+-|.++...|||+.|++|+ +-.++.
T Consensus 417 ~HGEvVcAvtIS~~t-rhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGG-----eastls 490 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPT-RHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGG-----EASTLS 490 (705)
T ss_pred ccCcEEEEEEecCCc-ceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecc-----ccceee
Confidence 455566666665443 333333 46642 22222 2345689999999999999994 578999
Q ss_pred EEEcCCce--eeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCC
Q 037555 87 LWEVGSWK--AMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG 164 (298)
Q Consensus 87 vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 164 (298)
|||+.... ....+......+.+++.+||.+..+++..||.|.|||+.+ ...++.+.+|.+.+.||.++++|
T Consensus 491 iWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhn-------q~~VrqfqGhtDGascIdis~dG 563 (705)
T KOG0639|consen 491 IWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHN-------QTLVRQFQGHTDGASCIDISKDG 563 (705)
T ss_pred eeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEccc-------ceeeecccCCCCCceeEEecCCC
Confidence 99996543 3344555556788999999999999999999999999998 67899999999999999999999
Q ss_pred CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCC
Q 037555 165 HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAP 244 (298)
Q Consensus 165 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~ 244 (298)
..|-+|+-|++||.||+++++.+. .. ...+.|.++-.+|.+ .+++.|.+.+.+.|-......
T Consensus 564 tklWTGGlDntvRcWDlregrqlq---qh-dF~SQIfSLg~cP~~-----dWlavGMens~vevlh~skp~--------- 625 (705)
T KOG0639|consen 564 TKLWTGGLDNTVRCWDLREGRQLQ---QH-DFSSQIFSLGYCPTG-----DWLAVGMENSNVEVLHTSKPE--------- 625 (705)
T ss_pred ceeecCCCccceeehhhhhhhhhh---hh-hhhhhheecccCCCc-----cceeeecccCcEEEEecCCcc---------
Confidence 999999999999999999988765 33 366889999999999 899999999998887765431
Q ss_pred CCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 245 STANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
-.. +..|...|.++.|.+-| .++++.|.|+.+..|...
T Consensus 626 -----kyq---lhlheScVLSlKFa~cG-------kwfvStGkDnlLnawrtP 663 (705)
T KOG0639|consen 626 -----KYQ---LHLHESCVLSLKFAYCG-------KWFVSTGKDNLLNAWRTP 663 (705)
T ss_pred -----cee---ecccccEEEEEEecccC-------ceeeecCchhhhhhccCc
Confidence 112 44599999999999999 899999999999999753
No 130
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=1.4e-22 Score=150.42 Aligned_cols=255 Identities=15% Similarity=0.206 Sum_probs=188.0
Q ss_pred cccccCCCCCceeeeccCCCccccccc------CCCCc--------------------eEEeccCCCceEEEEEcC-CCC
Q 037555 17 LDTLESVPDAVPAVFTEPPIEDQLAWH------TLWPE--------------------SHKLYGHGNELFSLCCDH-QGK 69 (298)
Q Consensus 17 ~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~--------------------~~~~~~h~~~v~~~~~s~-~~~ 69 (298)
......|.+.|..+...+-.+..+.++ .+|+. ...-.+|+..|.++.|-| |..
T Consensus 36 ~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 36 KDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG 115 (397)
T ss_pred cceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCc
Confidence 344456778888888887777666665 23321 111247888999999998 445
Q ss_pred EEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcC---CCCEEEEEeCCCeEEEEEeccCCCCccceeeeE
Q 037555 70 LVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH---DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIA 146 (298)
Q Consensus 70 ~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 146 (298)
.+.+++ -|.+++|||.++.+....|. .++.|.+-+|+| ...++++|..+-.|++.|+.. +....
T Consensus 116 mFtssS-----FDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S-------Gs~sH 182 (397)
T KOG4283|consen 116 MFTSSS-----FDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS-------GSFSH 182 (397)
T ss_pred eeeccc-----ccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccC-------Cccee
Confidence 666664 49999999999998888887 788899999998 345889999999999999998 66788
Q ss_pred EeeccCCceEEEEEccCCC-EEEEeeCCCeEEEEEccCCc-c-----------eeeeeecCCCCCceEEEEEeeccccCC
Q 037555 147 RQEAHKRIIWSCSWNPFGH-EFATGSRDKTVKIWAVENKS-S-----------VKQILALPPFNSSVTALSWVGLDRQKN 213 (298)
Q Consensus 147 ~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~-~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (298)
.+.+|.+.|.++.|+|... .|++|+.||.|++||++... + ...+..-..|.+.+..++|..++
T Consensus 183 ~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~---- 258 (397)
T KOG4283|consen 183 TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA---- 258 (397)
T ss_pred eeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc----
Confidence 9999999999999999765 57889999999999998641 1 11122234577889999999999
Q ss_pred ccEEEEeecCCcEEEEEeeecccccccCCCCCC-----------------------cceee--------eeccCCcccce
Q 037555 214 HGFLAVGMESGVIELWSISVNRTNDVSTPAPST-----------------------ANIII--------RFDPFACHVAA 262 (298)
Q Consensus 214 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~-----------------------~~~~~--------~~~~~~~~~~~ 262 (298)
.++++.+.|..+++|+..+++.......+... ...+. .+..+..|...
T Consensus 259 -~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~ 337 (397)
T KOG4283|consen 259 -RYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKR 337 (397)
T ss_pred -hhhhhccCccceEEeecccCcccccccccccccccccceEEEeecccceEEEEecCCeEEEEEccCceEEEeeecccce
Confidence 79999999999999999887543221111000 00000 01114457777
Q ss_pred EEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 263 VNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 263 v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
|.+..+.|+- ..+.++..|+.|..|-.
T Consensus 338 i~c~~~~~~f-------q~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 338 INCAAYRPDF-------EQCFTGDMNGNIYMWSP 364 (397)
T ss_pred eeEEeecCch-------hhhhccccCCccccccc
Confidence 8888888888 78889999999988854
No 131
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.1e-22 Score=162.91 Aligned_cols=220 Identities=14% Similarity=0.228 Sum_probs=173.7
Q ss_pred CCCceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC--------ceeeeccccccccEEEEEEcCCCC
Q 037555 45 LWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS--------WKAMGRLQSHSLTVTQIRFSHDDN 116 (298)
Q Consensus 45 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~ 116 (298)
.|....++..|.+.|++++|.|....|+++ ++|+.|++|+++. -+++.+|++|.++|.|+++.+++.
T Consensus 283 ~w~ik~tl~s~~d~ir~l~~~~sep~lit~-----sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~ 357 (577)
T KOG0642|consen 283 KWNIKFTLRSHDDCIRALAFHPSEPVLITA-----SEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE 357 (577)
T ss_pred ecceeeeeecchhhhhhhhcCCCCCeEEEe-----ccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce
Confidence 476677888999999999999999999999 5699999999932 256778999999999999999999
Q ss_pred EEEEEeCCCeEEEEEeccCCCCcc---ceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcce--e---
Q 037555 117 LLLSVSRDRQFSVFAIQRTGTGEI---DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSV--K--- 188 (298)
Q Consensus 117 ~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~--~--- 188 (298)
.+++|+.||+|+.|++........ .......+.+|.+.|+.+++++....|++++.||+++.|+....... .
T Consensus 358 ~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~ 437 (577)
T KOG0642|consen 358 HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPK 437 (577)
T ss_pred EEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCcc
Confidence 999999999999998763221111 12345677899999999999999999999999999999988654330 0
Q ss_pred ------------------------------------eeeecC-------CCCCceEEEEEeeccccCCccEEEEeecCCc
Q 037555 189 ------------------------------------QILALP-------PFNSSVTALSWVGLDRQKNHGFLAVGMESGV 225 (298)
Q Consensus 189 ------------------------------------~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~ 225 (298)
.+..+. .....+.-+.++|.. .+.+++.+|+.
T Consensus 438 e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~-----~~~~~~hed~~ 512 (577)
T KOG0642|consen 438 EHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA-----DITFTAHEDRS 512 (577)
T ss_pred ccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC-----CeeEecccCCc
Confidence 000000 001224455556655 68999999999
Q ss_pred EEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 226 IELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 226 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
|+++|..++ ..+.. ...|...++++++.|++ .+|++++.||.+++|.+.
T Consensus 513 Ir~~dn~~~-------------~~l~s---~~a~~~svtslai~~ng-------~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 513 IRFFDNKTG-------------KILHS---MVAHKDSVTSLAIDPNG-------PYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred eeccccccc-------------ccchh---eeeccceecceeecCCC-------ceEEeecCCceeehhhcc
Confidence 999999887 33333 45699999999999999 899999999999999874
No 132
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.3e-21 Score=146.57 Aligned_cols=197 Identities=15% Similarity=0.286 Sum_probs=151.9
Q ss_pred eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCC
Q 037555 59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTG 138 (298)
Q Consensus 59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 138 (298)
-.|+.|++.|.+||+|+. +|.|.|||+.+....+.+.+|..+|.+++|++||++|++++.|..|.+||+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~-----nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~---- 96 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCA-----NGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK---- 96 (405)
T ss_pred cceEEeccCcceeeeecc-----CCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccC----
Confidence 789999999999999976 99999999999998888999999999999999999999999999999999998
Q ss_pred ccceeeeEEeeccCCceEEEEEccCC-CEEEEeeCCCeEEEEEccCCcceeeeeecC---CCCCceEEEEEeeccccCCc
Q 037555 139 EIDYQLIARQEAHKRIIWSCSWNPFG-HEFATGSRDKTVKIWAVENKSSVKQILALP---PFNSSVTALSWVGLDRQKNH 214 (298)
Q Consensus 139 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~ 214 (298)
+.+++.+. .+.+|+.+.|+|.. +.+++.--+..-.+-++....... .... ..+....+..|.+.+
T Consensus 97 ---gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~--Lp~d~d~dln~sas~~~fdr~g----- 165 (405)
T KOG1273|consen 97 ---GSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSV--LPKDDDGDLNSSASHGVFDRRG----- 165 (405)
T ss_pred ---CCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceee--ccCCCccccccccccccccCCC-----
Confidence 44555555 57899999999954 444444334444455554422111 0111 011122334577777
Q ss_pred cEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEe
Q 037555 215 GFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVF 294 (298)
Q Consensus 215 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 294 (298)
+++++|...|.+.++|..+. +++..+... ....|..+.++..+ ..|+.-+.|..||.|
T Consensus 166 ~yIitGtsKGkllv~~a~t~-------------e~vas~rit--s~~~IK~I~~s~~g-------~~liiNtsDRvIR~y 223 (405)
T KOG1273|consen 166 KYIITGTSKGKLLVYDAETL-------------ECVASFRIT--SVQAIKQIIVSRKG-------RFLIINTSDRVIRTY 223 (405)
T ss_pred CEEEEecCcceEEEEecchh-------------eeeeeeeec--hheeeeEEEEeccC-------cEEEEecCCceEEEE
Confidence 89999999999999999887 555554321 24788999999999 899999999999999
Q ss_pred Eec
Q 037555 295 QVN 297 (298)
Q Consensus 295 ~~~ 297 (298)
+++
T Consensus 224 e~~ 226 (405)
T KOG1273|consen 224 EIS 226 (405)
T ss_pred ehh
Confidence 875
No 133
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.90 E-value=6.7e-22 Score=160.52 Aligned_cols=232 Identities=17% Similarity=0.262 Sum_probs=162.7
Q ss_pred EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeec--cccccccEEEEEEcCC-CCEEEEEeCCCe
Q 037555 50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR--LQSHSLTVTQIRFSHD-DNLLLSVSRDRQ 126 (298)
Q Consensus 50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~-~~~l~~~~~dg~ 126 (298)
.....|...|..+.|.|....|++++ .|.++++||+...+.+.. +.+|...|.+++|.|. ...|++|+.||.
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsas-----GDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~ 168 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSAS-----GDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGE 168 (720)
T ss_pred cccccccceeEeeccCCCceeEEEcc-----CCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCc
Confidence 44457999999999999767788884 489999999999888766 8899999999999994 568999999999
Q ss_pred EEEEEeccCCCCcc--------------------ceeeeEEeeccCCceEE---EEEccCCCEEEEeeC-CCeEEEEEcc
Q 037555 127 FSVFAIQRTGTGEI--------------------DYQLIARQEAHKRIIWS---CSWNPFGHEFATGSR-DKTVKIWAVE 182 (298)
Q Consensus 127 i~iwd~~~~~~~~~--------------------~~~~~~~~~~~~~~v~~---~~~~~~~~~l~~~~~-dg~i~~wd~~ 182 (298)
|.|||++....... ..+.+...+.+...|.+ +.+..|...||+++. |+.|++||++
T Consensus 169 illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLR 248 (720)
T KOG0321|consen 169 ILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLR 248 (720)
T ss_pred EEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeec
Confidence 99999986441100 01112222344445555 556668889999887 9999999999
Q ss_pred CCcceeeee-----ecCCC---CCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccC--CC---------
Q 037555 183 NKSSVKQIL-----ALPPF---NSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVST--PA--------- 243 (298)
Q Consensus 183 ~~~~~~~~~-----~~~~~---~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~--~~--------- 243 (298)
......... .+.-+ ...+.++.....| .+|++.+.|+.|++|++.......... ..
T Consensus 249 k~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG-----t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks 323 (720)
T KOG0321|consen 249 KNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG-----TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKS 323 (720)
T ss_pred ccccccccCCCcccCccCcccceeeeEEEEecCCC-----CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeee
Confidence 755432111 11112 2346777777777 678887889999999998643211100 00
Q ss_pred ---CC----------Cc-------ceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 244 ---PS----------TA-------NIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 244 ---~~----------~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+. .. .+......+.+|...|++++|.|... .-++||+.|..+++|++.
T Consensus 324 ~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~------t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 324 ELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSAT------TPVATCSDDFRVKIWRLS 391 (720)
T ss_pred ecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccC------CCceeeccCcceEEEecc
Confidence 00 00 00111112568999999999999764 578899999999999973
No 134
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.9e-21 Score=144.99 Aligned_cols=242 Identities=13% Similarity=0.177 Sum_probs=178.9
Q ss_pred cccccceeeeecCcccccccCCCCCceeeeccCCCcccccccCCCC----------ceEEeccCCCceEEEEEcCCCCEE
Q 037555 2 YAATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHTLWP----------ESHKLYGHGNELFSLCCDHQGKLV 71 (298)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----------~~~~~~~h~~~v~~~~~s~~~~~l 71 (298)
|++.++.++.+..+....+ .|..++...+|.+ +..+.++.+-. ....+..|..+|.|+.+++....+
T Consensus 33 WDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~v 109 (323)
T KOG1036|consen 33 WDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCV 109 (323)
T ss_pred ccCcEEEEeccchhhhhhe-ecCCceeeeeccC--CceEEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeE
Confidence 9999999999988554444 5678888888885 33334442222 234456799999999999988899
Q ss_pred EeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc
Q 037555 72 ASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH 151 (298)
Q Consensus 72 ~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 151 (298)
++|+. |++|++||.+.......+. ....|.++.. .++.|++|+.+..+.+||++..... .......-
T Consensus 110 IsgsW-----D~~ik~wD~R~~~~~~~~d-~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~-----~q~reS~l 176 (323)
T KOG1036|consen 110 ISGSW-----DKTIKFWDPRNKVVVGTFD-QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEP-----FQRRESSL 176 (323)
T ss_pred EEccc-----CccEEEEeccccccccccc-cCceEEEEec--cCCEEEEeecCceEEEEEcccccch-----hhhccccc
Confidence 99977 8999999998655555555 3447888776 5779999999999999999974321 11122234
Q ss_pred CCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcce-eeeeecCCCC---------CceEEEEEeeccccCCccEEEEee
Q 037555 152 KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSV-KQILALPPFN---------SSVTALSWVGLDRQKNHGFLAVGM 221 (298)
Q Consensus 152 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~---------~~v~~~~~~~~~~~~~~~~l~~g~ 221 (298)
+-.+.++++.|++.-++.++-||+|.+=.++..+.. .....+..|. .+|++|+|+|.. ..|+||+
T Consensus 177 kyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~-----~tfaTgG 251 (323)
T KOG1036|consen 177 KYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH-----GTFATGG 251 (323)
T ss_pred eeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc-----ceEEecC
Confidence 567899999998888999999999988766654211 1111333332 369999999997 7999999
Q ss_pred cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC
Q 037555 222 ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA 287 (298)
Q Consensus 222 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~ 287 (298)
.||.|.+||+.+. +.+..+ ......|.+++|+.+| ..||.++.
T Consensus 252 sDG~V~~Wd~~~r-------------Krl~q~---~~~~~SI~slsfs~dG-------~~LAia~s 294 (323)
T KOG1036|consen 252 SDGIVNIWDLFNR-------------KRLKQL---AKYETSISSLSFSMDG-------SLLAIASS 294 (323)
T ss_pred CCceEEEccCcch-------------hhhhhc---cCCCCceEEEEeccCC-------CeEEEEec
Confidence 9999999999876 444443 3456789999999999 78888764
No 135
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.3e-22 Score=155.96 Aligned_cols=214 Identities=18% Similarity=0.255 Sum_probs=168.3
Q ss_pred CCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcC
Q 037555 23 VPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVG 91 (298)
Q Consensus 23 ~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~ 91 (298)
.++.|.+++.. |.+.+++.+ -+|. .+..+.+|-..|+|+.|+-||.+|++|++ ||.|.+|.+-
T Consensus 80 ~Pg~v~al~s~-n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgsk-----Dg~V~vW~l~ 153 (476)
T KOG0646|consen 80 LPGPVHALASS-NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSK-----DGAVLVWLLT 153 (476)
T ss_pred cccceeeeecC-CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCC-----CccEEEEEEE
Confidence 34566777666 556666655 2553 35667899999999999999999999965 9999999873
Q ss_pred ---------CceeeeccccccccEEEEEEcCC--CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEE
Q 037555 92 ---------SWKAMGRLQSHSLTVTQIRFSHD--DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW 160 (298)
Q Consensus 92 ---------~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 160 (298)
+-++...|..|.-+|+++...+. ..+++++|.|.++++||+.. ..++..+. .+..+.+++.
T Consensus 154 ~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~-------g~LLlti~-fp~si~av~l 225 (476)
T KOG0646|consen 154 DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSL-------GVLLLTIT-FPSSIKAVAL 225 (476)
T ss_pred eecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEecc-------ceeeEEEe-cCCcceeEEE
Confidence 23567788999999999999875 35899999999999999997 45555544 4678999999
Q ss_pred ccCCCEEEEeeCCCeEEEEEccCCcc-------------eeeeeecCCCCC--ceEEEEEeeccccCCccEEEEeecCCc
Q 037555 161 NPFGHEFATGSRDKTVKIWAVENKSS-------------VKQILALPPFNS--SVTALSWVGLDRQKNHGFLAVGMESGV 225 (298)
Q Consensus 161 ~~~~~~l~~~~~dg~i~~wd~~~~~~-------------~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~l~~g~~dg~ 225 (298)
+|-+..++.|+.+|.|.+.++..... ...+..+.+|.. .|+|++.+-++ .+|++|+.||.
T Consensus 226 Dpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg-----tlLlSGd~dg~ 300 (476)
T KOG0646|consen 226 DPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG-----TLLLSGDEDGK 300 (476)
T ss_pred cccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc-----cEEEeeCCCCC
Confidence 99999999999999999888765331 112335567777 99999999999 89999999999
Q ss_pred EEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecC
Q 037555 226 IELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTH 271 (298)
Q Consensus 226 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 271 (298)
|.|||+.+. ++++.+.. ..++|+.+.+.|-
T Consensus 301 VcvWdi~S~-------------Q~iRtl~~---~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 301 VCVWDIYSK-------------QCIRTLQT---SKGPVTNLQINPL 330 (476)
T ss_pred EEEEecchH-------------HHHHHHhh---hccccceeEeecc
Confidence 999999887 55555432 4567777777554
No 136
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.90 E-value=6.9e-22 Score=146.25 Aligned_cols=217 Identities=16% Similarity=0.291 Sum_probs=158.6
Q ss_pred eEEeccCCCceEEEEEcCCCCE-EEeEeccCCCCc---eEEEEEEcCCc---------eeeeccc-cccccEEEEEEcCC
Q 037555 49 SHKLYGHGNELFSLCCDHQGKL-VASSCKAQSTAA---AEIWLWEVGSW---------KAMGRLQ-SHSLTVTQIRFSHD 114 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~-l~~~~~~~~~~d---~~i~vw~~~~~---------~~~~~~~-~~~~~v~~~~~~~~ 114 (298)
.+.|..|.++|..++-+|..+. |+++-.+.+ .. ..+.||.+... +.+..+. .+-+.|.|+.|.|+
T Consensus 56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s-~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pn 134 (370)
T KOG1007|consen 56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTS-DSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPN 134 (370)
T ss_pred hhhhhcCCcceehhhcCCCCCceEEEEEeccC-CCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCC
Confidence 3456778899999999996554 454433222 22 35779998642 2333343 35568999999999
Q ss_pred CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc--CCCEEEEeeCCCeEEEEEccCCcceeeeee
Q 037555 115 DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP--FGHEFATGSRDKTVKIWAVENKSSVKQILA 192 (298)
Q Consensus 115 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 192 (298)
+..+++-. |..|.+|++........ ......-..+....++-+|+| +++.+++.+ |+++..||+|+.++...+.
T Consensus 135 s~klasm~-dn~i~l~~l~ess~~va-ev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~- 210 (370)
T KOG1007|consen 135 SDKLASMD-DNNIVLWSLDESSKIVA-EVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIE- 210 (370)
T ss_pred CCeeEEec-cCceEEEEcccCcchhe-eecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchh-
Confidence 99888877 88999999987543211 001111123566778889999 566666654 7999999999887766332
Q ss_pred cCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555 193 LPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE 272 (298)
Q Consensus 193 ~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 272 (298)
.+|...|..+.|+|+.. .+|+++++||.|++||.+..+ ..+.++.+|...|+++.|+|..
T Consensus 211 -dAHgq~vrdlDfNpnkq----~~lvt~gDdgyvriWD~R~tk---------------~pv~el~~HsHWvW~VRfn~~h 270 (370)
T KOG1007|consen 211 -DAHGQRVRDLDFNPNKQ----HILVTCGDDGYVRIWDTRKTK---------------FPVQELPGHSHWVWAVRFNPEH 270 (370)
T ss_pred -hhhcceeeeccCCCCce----EEEEEcCCCccEEEEeccCCC---------------ccccccCCCceEEEEEEecCcc
Confidence 35778899999999875 789999999999999999653 2233467899999999999987
Q ss_pred CCCCCcceEEEeeeCCCcEEEeEe
Q 037555 273 KPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 273 ~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
. .+++++|.|..|.+|-.
T Consensus 271 d------qLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 271 D------QLILSGGSDSAVNLSCA 288 (370)
T ss_pred c------eEEEecCCCceeEEEec
Confidence 4 79999999999999854
No 137
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.4e-21 Score=146.20 Aligned_cols=204 Identities=17% Similarity=0.312 Sum_probs=155.5
Q ss_pred cccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCC--EEEeEeccCCCCce
Q 037555 17 LDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGK--LVASSCKAQSTAAA 83 (298)
Q Consensus 17 ~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~--~l~~~~~~~~~~d~ 83 (298)
+-.+..|..++.+++.+ +..++++ .+++ +...+-.|.+.|+++.|.++-. .|++| .+||
T Consensus 36 lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~-----sdDG 107 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSG-----SDDG 107 (362)
T ss_pred cccccccccceeEEEec---ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeee-----cCCC
Confidence 56678999999999887 3444444 2232 4566778999999999998765 78888 5699
Q ss_pred EEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc-----ceeeeE------------
Q 037555 84 EIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI-----DYQLIA------------ 146 (298)
Q Consensus 84 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-----~~~~~~------------ 146 (298)
.|.+|+....+.+.++++|.+.|+.++.+|.+++.++.+.|+.+++||+-.+..... ....+.
T Consensus 108 ~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~ 187 (362)
T KOG0294|consen 108 HIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSG 187 (362)
T ss_pred cEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEe
Confidence 999999999999999999999999999999999999999999999999976553221 000000
Q ss_pred -----Eee----------ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecccc
Q 037555 147 -----RQE----------AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQ 211 (298)
Q Consensus 147 -----~~~----------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (298)
.+. .....+.++.|. ++..|++|..|+.|++||..+..+.. .+.+|...|..+.+--+.
T Consensus 188 ~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~---~~~AH~~RVK~i~~~~~~-- 261 (362)
T KOG0294|consen 188 RNKIDIYQLDNASVFREIENPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLT---EFLAHENRVKDIASYTNP-- 261 (362)
T ss_pred ccEEEEEecccHhHhhhhhccccceeeeec-CCceEEEecCCceEEEeccCCCccce---eeecchhheeeeEEEecC--
Confidence 000 001224444444 56789999999999999999877666 677899999999854431
Q ss_pred CCccEEEEeecCCcEEEEEeeecc
Q 037555 212 KNHGFLAVGMESGVIELWSISVNR 235 (298)
Q Consensus 212 ~~~~~l~~g~~dg~i~vwd~~~~~ 235 (298)
.+.+|++++.||.|+|||++...
T Consensus 262 -~~~~lvTaSSDG~I~vWd~~~~~ 284 (362)
T KOG0294|consen 262 -EHEYLVTASSDGFIKVWDIDMET 284 (362)
T ss_pred -CceEEEEeccCceEEEEEccccc
Confidence 12799999999999999998763
No 138
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=7.6e-21 Score=155.37 Aligned_cols=236 Identities=22% Similarity=0.339 Sum_probs=181.5
Q ss_pred ccCCCCCceeeeccCCCccccccc------CCCC------ceEEeccCC-CceEEEEEcCCCCEEEeEeccCCCCceEEE
Q 037555 20 LESVPDAVPAVFTEPPIEDQLAWH------TLWP------ESHKLYGHG-NELFSLCCDHQGKLVASSCKAQSTAAAEIW 86 (298)
Q Consensus 20 ~~~~~~~v~~~~~~~~~~~~~~~~------~~~~------~~~~~~~h~-~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~ 86 (298)
+.-.+..|.+++++.. ...++.+ .+|. ....+.++. +.|.+++|++.++++-++ .+|.|.
T Consensus 21 ~d~~Ps~I~slA~s~k-S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g------~sg~i~ 93 (691)
T KOG2048|consen 21 VDYKPSEIVSLAYSHK-SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSG------LSGSIT 93 (691)
T ss_pred EeeeccceEEEEEecc-CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeec------CCceEE
Confidence 3455677788888743 3444444 2443 345666655 479999999666555444 489999
Q ss_pred EEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCE
Q 037555 87 LWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHE 166 (298)
Q Consensus 87 vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 166 (298)
-||+.+++....+....+.|.+++.+|.+..++.|+.||.+..++..... ......+....+.|.++.|+|++..
T Consensus 94 EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~-----I~~~r~l~rq~sRvLslsw~~~~~~ 168 (691)
T KOG2048|consen 94 EWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDK-----ITYKRSLMRQKSRVLSLSWNPTGTK 168 (691)
T ss_pred EEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCce-----EEEEeecccccceEEEEEecCCccE
Confidence 99999999999999899999999999999999999999977777765432 3334445556789999999999999
Q ss_pred EEEeeCCCeEEEEEccCCcceeee----eecCC-CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccC
Q 037555 167 FATGSRDKTVKIWAVENKSSVKQI----LALPP-FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVST 241 (298)
Q Consensus 167 l~~~~~dg~i~~wd~~~~~~~~~~----~~~~~-~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 241 (298)
+++|+.||.|++||...+...... ..+.. ...-|+++.|-.++ .|++|...|.|.+||...+.
T Consensus 169 i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~------tI~sgDS~G~V~FWd~~~gT------ 236 (691)
T KOG2048|consen 169 IAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS------TIASGDSAGTVTFWDSIFGT------ 236 (691)
T ss_pred EEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC------cEEEecCCceEEEEcccCcc------
Confidence 999999999999999987765511 11111 33447888888765 89999999999999998773
Q ss_pred CCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 242 PAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
.+.. +..|.+.|.+|+..+++ .+++++|.|+.|..+..
T Consensus 237 -------LiqS---~~~h~adVl~Lav~~~~-------d~vfsaGvd~~ii~~~~ 274 (691)
T KOG2048|consen 237 -------LIQS---HSCHDADVLALAVADNE-------DRVFSAGVDPKIIQYSL 274 (691)
T ss_pred -------hhhh---hhhhhcceeEEEEcCCC-------CeEEEccCCCceEEEEe
Confidence 3333 55799999999999998 89999999999887764
No 139
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=7.4e-20 Score=146.90 Aligned_cols=249 Identities=11% Similarity=0.074 Sum_probs=169.0
Q ss_pred ccccceeeeecCcccccccCCCCCceeeeccCCCcccc-ccc------CCCC-----ceEEeccCCCceEEEEEcCCCCE
Q 037555 3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQL-AWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKL 70 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~ 70 (298)
++.+..++..+++.+..+..+.. +..+.+.| .+..+ +.. .+|+ ....+..+. .+..++|+|+++.
T Consensus 10 d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~~g~~ 86 (300)
T TIGR03866 10 DNTISVIDTATLEVTRTFPVGQR-PRGITLSK-DGKLLYVCASDSDTIQVIDLATGEVIGTLPSGP-DPELFALHPNGKI 86 (300)
T ss_pred CCEEEEEECCCCceEEEEECCCC-CCceEECC-CCCEEEEEECCCCeEEEEECCCCcEEEeccCCC-CccEEEECCCCCE
Confidence 45677788888888888876654 55677774 44433 332 2332 223343333 3578899999998
Q ss_pred EEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCC-eEEEEEeccCCCCccceeeeEEee
Q 037555 71 VASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDR-QFSVFAIQRTGTGEIDYQLIARQE 149 (298)
Q Consensus 71 l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~ 149 (298)
+++++ ..++.|++||+.+.+.+..+.. ...+.+++|+|+++++++++.++ .+.+||... ........
T Consensus 87 l~~~~----~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~-------~~~~~~~~ 154 (300)
T TIGR03866 87 LYIAN----EDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKT-------YEIVDNVL 154 (300)
T ss_pred EEEEc----CCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCC-------CeEEEEEE
Confidence 87664 3478999999998877766652 33468899999999999888765 566778765 22332222
Q ss_pred ccCCceEEEEEccCCCEEEEe-eCCCeEEEEEccCCcceeeeeecCC-----CCCceEEEEEeeccccCCccEE-EEeec
Q 037555 150 AHKRIIWSCSWNPFGHEFATG-SRDKTVKIWAVENKSSVKQILALPP-----FNSSVTALSWVGLDRQKNHGFL-AVGME 222 (298)
Q Consensus 150 ~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~l-~~g~~ 222 (298)
.......+.|+|++++|+++ ..++.|++||+++++....+. +.. .......++|+|++ .++ ++...
T Consensus 155 -~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~s~dg-----~~~~~~~~~ 227 (300)
T TIGR03866 155 -VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKIT-FEIPGVHPEAVQPVGIKLTKDG-----KTAFVALGP 227 (300)
T ss_pred -cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeee-ecccccccccCCccceEECCCC-----CEEEEEcCC
Confidence 23345779999999988655 468999999999887655332 111 11124568899988 554 44455
Q ss_pred CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEee-eCCCcEEEeEec
Q 037555 223 SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASC-GADNTVRVFQVN 297 (298)
Q Consensus 223 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~-~~d~~i~iw~~~ 297 (298)
++.|.+||.++. +....+. +...+.+++|+|++ .+|+++ +.++.|++||++
T Consensus 228 ~~~i~v~d~~~~-------------~~~~~~~----~~~~~~~~~~~~~g-------~~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 228 ANRVAVVDAKTY-------------EVLDYLL----VGQRVWQLAFTPDE-------KYLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred CCeEEEEECCCC-------------cEEEEEE----eCCCcceEEECCCC-------CEEEEEcCCCCeEEEEECC
Confidence 678999998765 3333221 34578899999999 677765 569999999975
No 140
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=8.3e-21 Score=160.08 Aligned_cols=188 Identities=20% Similarity=0.267 Sum_probs=151.5
Q ss_pred cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQ 133 (298)
Q Consensus 54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 133 (298)
..+-++++++|+.+|+++|.|+ +|-.|++-+..+......+++|.++|.++.|+|++++||+.+.||.|++|+++
T Consensus 94 Rftlp~r~~~v~g~g~~iaags-----dD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 94 RFTLPIRDLAVSGSGKMIAAGS-----DDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred eeeccceEEEEecCCcEEEeec-----CceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence 3457899999999999999994 58999999999988889999999999999999999999999999999999998
Q ss_pred cCCCCccceeeeEEeecc-CCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccC
Q 037555 134 RTGTGEIDYQLIARQEAH-KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQK 212 (298)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 212 (298)
.......-.......... ...+..++|+|++..|++...|+.|++|+..+......+.. ..+...+..++|+|.|
T Consensus 169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~-~~~ss~~~~~~wsPnG--- 244 (933)
T KOG1274|consen 169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD-KLSSSKFSDLQWSPNG--- 244 (933)
T ss_pred cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc-cccccceEEEEEcCCC---
Confidence 743211100111111111 45677899999999999999999999999999888775533 3344559999999999
Q ss_pred CccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555 213 NHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE 272 (298)
Q Consensus 213 ~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 272 (298)
.|||+++.+|.|.|||..+-+ .......|.+++|.|+.
T Consensus 245 --~YiAAs~~~g~I~vWnv~t~~--------------------~~~~~~~Vc~~aw~p~~ 282 (933)
T KOG1274|consen 245 --KYIAASTLDGQILVWNVDTHE--------------------RHEFKRAVCCEAWKPNA 282 (933)
T ss_pred --cEEeeeccCCcEEEEecccch--------------------hccccceeEEEecCCCC
Confidence 899999999999999998631 11245689999999987
No 141
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.89 E-value=3.1e-21 Score=148.44 Aligned_cols=207 Identities=16% Similarity=0.274 Sum_probs=157.4
Q ss_pred eEEeccCCCceEEEEEcC-CCCEEEeEeccCCCCceEEEEEEcCCc-------eeeeccccccccEEEEEEcCC-CCEEE
Q 037555 49 SHKLYGHGNELFSLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGSW-------KAMGRLQSHSLTVTQIRFSHD-DNLLL 119 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~-~~~l~ 119 (298)
.-.+.||+++|..++|+| +...+|+| ++|.+|.||.+..+ +++..+.+|...|.-++|+|. .+.|+
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASg-----SeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLl 148 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASG-----SEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLL 148 (472)
T ss_pred CCCccCccccccccccCccCCceeecC-----CCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHh
Confidence 445679999999999999 45567777 56999999998654 445668899999999999994 56899
Q ss_pred EEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCC-
Q 037555 120 SVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNS- 198 (298)
Q Consensus 120 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~- 198 (298)
+++.|.+|.+|++.+ +..+..+. |...|+++.|+.+|.+|++.+.|.+|||||.++++.+.. -.+|.+
T Consensus 149 sag~Dn~v~iWnv~t-------geali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e---~~~heG~ 217 (472)
T KOG0303|consen 149 SAGSDNTVSIWNVGT-------GEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSE---GVAHEGA 217 (472)
T ss_pred hccCCceEEEEeccC-------CceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeee---cccccCC
Confidence 999999999999998 44455565 999999999999999999999999999999999988773 334443
Q ss_pred ceEEEEEeeccccCCccEEEEee---cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCC
Q 037555 199 SVTALSWVGLDRQKNHGFLAVGM---ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPK 275 (298)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 275 (298)
....+.|..++ .++.+|. .+..+-+||..+-+.+ .....+. ....|.---|.++.
T Consensus 218 k~~Raifl~~g-----~i~tTGfsr~seRq~aLwdp~nl~eP----------~~~~elD----tSnGvl~PFyD~dt--- 275 (472)
T KOG0303|consen 218 KPARAIFLASG-----KIFTTGFSRMSERQIALWDPNNLEEP----------IALQELD----TSNGVLLPFYDPDT--- 275 (472)
T ss_pred CcceeEEeccC-----ceeeeccccccccceeccCcccccCc----------ceeEEec----cCCceEEeeecCCC---
Confidence 34567777777 5555554 4788999998875432 1222222 23445445567776
Q ss_pred CCcceEE-EeeeCCCcEEEeEec
Q 037555 276 NSRTMQL-ASCGADNTVRVFQVN 297 (298)
Q Consensus 276 ~~~~~~l-~s~~~d~~i~iw~~~ 297 (298)
.++ +.|-.|+.||.|++.
T Consensus 276 ----~ivYl~GKGD~~IRYyEit 294 (472)
T KOG0303|consen 276 ----SIVYLCGKGDSSIRYFEIT 294 (472)
T ss_pred ----CEEEEEecCCcceEEEEec
Confidence 454 455579999999874
No 142
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=2.1e-21 Score=156.68 Aligned_cols=260 Identities=17% Similarity=0.260 Sum_probs=201.7
Q ss_pred ccccceeeeecCcccccccCCCCCceeeeccCCCccc-cccc--------------------------------------
Q 037555 3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQ-LAWH-------------------------------------- 43 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~-------------------------------------- 43 (298)
++..+.|+..||.++.++.- .+.|.+++|.|....- ++.+
T Consensus 421 DGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~ 499 (733)
T KOG0650|consen 421 DGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAV 499 (733)
T ss_pred CCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccc
Confidence 46778999999999888765 3377777777533211 1111
Q ss_pred CCCCc---------eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCC
Q 037555 44 TLWPE---------SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHD 114 (298)
Q Consensus 44 ~~~~~---------~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~ 114 (298)
..|.. +.....|..+|..+.|+..|.+|++.+.+ +....|.|.++.......-|+-..+.|.++.|+|.
T Consensus 500 ~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~--~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs 577 (733)
T KOG0650|consen 500 VTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPD--SGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPS 577 (733)
T ss_pred eeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccC--CCcceEEEEecccccccCchhhcCCceeEEEecCC
Confidence 13421 23445688999999999999999999765 33678999999887777778777888999999999
Q ss_pred CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC
Q 037555 115 DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP 194 (298)
Q Consensus 115 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 194 (298)
..+|++++. ..|++||+.. ..+++.+......|..++.+|.|..|+.++.|+.+..+|+.-..... .++.
T Consensus 578 ~p~lfVaTq-~~vRiYdL~k-------qelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPy--k~lr 647 (733)
T KOG0650|consen 578 KPYLFVATQ-RSVRIYDLSK-------QELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPY--KTLR 647 (733)
T ss_pred CceEEEEec-cceEEEehhH-------HHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchh--HHhh
Confidence 888888885 6899999987 55667777777889999999999999999999999999998653222 2566
Q ss_pred CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccce----EEEEEeec
Q 037555 195 PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAA----VNRMAWKT 270 (298)
Q Consensus 195 ~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~~~ 270 (298)
-|...+++++|++.- .++++|+.||.+.|+.-.-..-. .++..+..+..+.+|... |.+..|+|
T Consensus 648 ~H~~avr~Va~H~ry-----PLfas~sdDgtv~Vfhg~VY~Dl-------~qnpliVPlK~L~gH~~~~~~gVLd~~wHP 715 (733)
T KOG0650|consen 648 LHEKAVRSVAFHKRY-----PLFASGSDDGTVIVFHGMVYNDL-------LQNPLIVPLKRLRGHEKTNDLGVLDTIWHP 715 (733)
T ss_pred hhhhhhhhhhhcccc-----ceeeeecCCCcEEEEeeeeehhh-------hcCCceEeeeeccCceeecccceEeecccC
Confidence 688999999999998 69999999999999864422100 011445566667888766 99999999
Q ss_pred CCCCCCCcceEEEeeeCCCcEEEe
Q 037555 271 HEKPKNSRTMQLASCGADNTVRVF 294 (298)
Q Consensus 271 ~~~~~~~~~~~l~s~~~d~~i~iw 294 (298)
.. .+|++++.||+|++|
T Consensus 716 ~q-------pWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 716 RQ-------PWLFSAGADGTIRLF 732 (733)
T ss_pred CC-------ceEEecCCCceEEee
Confidence 98 799999999999998
No 143
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=2.7e-21 Score=161.40 Aligned_cols=194 Identities=14% Similarity=0.189 Sum_probs=169.9
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecc---ccccccEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRL---QSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQ 133 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 133 (298)
..+++++.++.|++.+.| ...|.|-+|++++|-...++ ..|..+|++++...-++.+++++.+|.+.+||+.
T Consensus 449 ~~~~av~vs~CGNF~~IG-----~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~ 523 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIG-----YSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFK 523 (910)
T ss_pred cceEEEEEeccCceEEEe-----ccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecC
Confidence 679999999999999999 45899999999999888888 4799999999999888999999999999999998
Q ss_pred cCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCC
Q 037555 134 RTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKN 213 (298)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (298)
. ..++..+. -...+.++..+.....++.+..|-.|+++|..+.+..+ .+.+|...|++++|+|++
T Consensus 524 ~-------k~l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR---~f~gh~nritd~~FS~Dg---- 588 (910)
T KOG1539|consen 524 K-------KVLKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVR---EFWGHGNRITDMTFSPDG---- 588 (910)
T ss_pred C-------cceeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhH---HhhccccceeeeEeCCCC----
Confidence 6 33444443 35667888888888899999999999999999988887 788999999999999999
Q ss_pred ccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCC-CcEE
Q 037555 214 HGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD-NTVR 292 (298)
Q Consensus 214 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d-~~i~ 292 (298)
.+|++++.|++|++||+.++ .++-.+. ...+..++.|+|++ .+|||...| .-|+
T Consensus 589 -rWlisasmD~tIr~wDlpt~-------------~lID~~~----vd~~~~sls~SPng-------D~LAT~Hvd~~gIy 643 (910)
T KOG1539|consen 589 -RWLISASMDSTIRTWDLPTG-------------TLIDGLL----VDSPCTSLSFSPNG-------DFLATVHVDQNGIY 643 (910)
T ss_pred -cEEEEeecCCcEEEEeccCc-------------ceeeeEe----cCCcceeeEECCCC-------CEEEEEEecCceEE
Confidence 79999999999999999988 5544443 56789999999999 899999988 6799
Q ss_pred EeE
Q 037555 293 VFQ 295 (298)
Q Consensus 293 iw~ 295 (298)
+|-
T Consensus 644 lWs 646 (910)
T KOG1539|consen 644 LWS 646 (910)
T ss_pred EEE
Confidence 995
No 144
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3e-20 Score=151.90 Aligned_cols=210 Identities=18% Similarity=0.287 Sum_probs=164.6
Q ss_pred eccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceee-ecccc-ccccEEEEEEcCCCCEEEEEeCCCeEEE
Q 037555 52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAM-GRLQS-HSLTVTQIRFSHDDNLLLSVSRDRQFSV 129 (298)
Q Consensus 52 ~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~i 129 (298)
+.--..+|.+++|+.+.+.||.+ -.+|.|.+|++...=.. ..+.+ ....|.+++|+ ++..|++.+.+|.|..
T Consensus 21 ~d~~Ps~I~slA~s~kS~~lAvs-----Rt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~E 94 (691)
T KOG2048|consen 21 VDYKPSEIVSLAYSHKSNQLAVS-----RTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITE 94 (691)
T ss_pred EeeeccceEEEEEeccCCceeee-----ccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEE
Confidence 33456889999999999999999 56999999999865332 33444 35679999999 5567889999999999
Q ss_pred EEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecc
Q 037555 130 FAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLD 209 (298)
Q Consensus 130 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (298)
||+.+ .++........+.|++++.+|.+..++.|+.||.+..++...++.... ..+....+.+.++.|+|++
T Consensus 95 wDl~~-------lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~-r~l~rq~sRvLslsw~~~~ 166 (691)
T KOG2048|consen 95 WDLHT-------LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYK-RSLMRQKSRVLSLSWNPTG 166 (691)
T ss_pred Eeccc-------CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEE-eecccccceEEEEEecCCc
Confidence 99998 667777888889999999999999999999999888888776554432 2455556899999999998
Q ss_pred ccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCc-ccceEEEEEeecCCCCCCCcceEEEeeeCC
Q 037555 210 RQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFAC-HVAAVNRMAWKTHEKPKNSRTMQLASCGAD 288 (298)
Q Consensus 210 ~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d 288 (298)
..+++|+.||.|++||...+..... ....+..+.. ...-|+++.|-.++ .|++|..-
T Consensus 167 -----~~i~~Gs~Dg~Iriwd~~~~~t~~~---------~~~~~d~l~k~~~~iVWSv~~Lrd~--------tI~sgDS~ 224 (691)
T KOG2048|consen 167 -----TKIAGGSIDGVIRIWDVKSGQTLHI---------ITMQLDRLSKREPTIVWSVLFLRDS--------TIASGDSA 224 (691)
T ss_pred -----cEEEecccCceEEEEEcCCCceEEE---------eeecccccccCCceEEEEEEEeecC--------cEEEecCC
Confidence 6799999999999999988732210 0011111222 34568899998776 89999999
Q ss_pred CcEEEeEec
Q 037555 289 NTVRVFQVN 297 (298)
Q Consensus 289 ~~i~iw~~~ 297 (298)
|+|.+||..
T Consensus 225 G~V~FWd~~ 233 (691)
T KOG2048|consen 225 GTVTFWDSI 233 (691)
T ss_pred ceEEEEccc
Confidence 999999964
No 145
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.8e-21 Score=150.09 Aligned_cols=248 Identities=17% Similarity=0.196 Sum_probs=187.2
Q ss_pred eecCcccccccCCCCCceeeeccCCCcccccccC------CCC-------ceEEeccCCC-ceEEEEEcCCCCEEEeEec
Q 037555 11 RHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHT------LWP-------ESHKLYGHGN-ELFSLCCDHQGKLVASSCK 76 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------~~~-------~~~~~~~h~~-~v~~~~~s~~~~~l~~~~~ 76 (298)
+.....++.+.-..-++.+..|.|...+.+.++. .|+ .+..+.++.. .+.....+|++++|+..+.
T Consensus 244 Gk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~ 323 (514)
T KOG2055|consen 244 GKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN 323 (514)
T ss_pred CccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEccc
Confidence 4445567777777778888888865554665552 232 2344455553 5678888999999999954
Q ss_pred cCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCce-
Q 037555 77 AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRII- 155 (298)
Q Consensus 77 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v- 155 (298)
.|.|.+....+++.+.++. -.+.|..++|+.+++.|++++.+|.|.+||++. ..++..+.. .+.|
T Consensus 324 -----~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~-------~~~~~rf~D-~G~v~ 389 (514)
T KOG2055|consen 324 -----NGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQ-------NSCLHRFVD-DGSVH 389 (514)
T ss_pred -----CceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCC-------cceEEEEee-cCccc
Confidence 8999999999999998888 678899999999999999999999999999997 445555543 3333
Q ss_pred -EEEEEccCCCEEEEeeCCCeEEEEEccCC---cceeeeeecCCCCCceEEEEEeeccccCCccEEEEeec--CCcEEEE
Q 037555 156 -WSCSWNPFGHEFATGSRDKTVKIWAVENK---SSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGME--SGVIELW 229 (298)
Q Consensus 156 -~~~~~~~~~~~l~~~~~dg~i~~wd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~--dg~i~vw 229 (298)
++++.++++.+||+|+..|.|.|||..+. ....++..+......|+++.|+|+. ++|+.++. +..+++-
T Consensus 390 gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~-----qiLAiaS~~~knalrLV 464 (514)
T KOG2055|consen 390 GTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDA-----QILAIASRVKKNALRLV 464 (514)
T ss_pred eeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcch-----hhhhhhhhccccceEEE
Confidence 56777789999999999999999996542 2223333555566789999999998 78888774 5678888
Q ss_pred EeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 230 SISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.+.+. .....+......-+.|++|+|+|.+ .+|+.|..+|.+.+|.|.
T Consensus 465 HvPS~-------------TVFsNfP~~n~~vg~vtc~aFSP~s-------G~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 465 HVPSC-------------TVFSNFPTSNTKVGHVTCMAFSPNS-------GYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eccce-------------eeeccCCCCCCcccceEEEEecCCC-------ceEEeecCCCceeeEeec
Confidence 87654 2233333233345679999999998 899999999999999985
No 146
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.1e-22 Score=173.26 Aligned_cols=207 Identities=21% Similarity=0.318 Sum_probs=157.8
Q ss_pred CCceEEEEEcCCCCE---EEeEeccCCCCceEEEEEEcCC---c---eeeeccccccccEEEEEEcCC-CCEEEEEeCCC
Q 037555 56 GNELFSLCCDHQGKL---VASSCKAQSTAAAEIWLWEVGS---W---KAMGRLQSHSLTVTQIRFSHD-DNLLLSVSRDR 125 (298)
Q Consensus 56 ~~~v~~~~~s~~~~~---l~~~~~~~~~~d~~i~vw~~~~---~---~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg 125 (298)
....+.++|.+.|.. |++|+ .+||.|.+||... + ..+.++..|++.|..+.|++. +++|++|+.||
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG----~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~g 139 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGG----LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDG 139 (1049)
T ss_pred cccceeeeecccCCCccceeecc----ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCC
Confidence 346789999987766 34443 5799999999865 2 234566789999999999994 56999999999
Q ss_pred eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEE
Q 037555 126 QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALS 204 (298)
Q Consensus 126 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~ 204 (298)
.|.|||+.......... -....+.|.+++|+. ....|++++.+|++.|||++..+.+..+... .....+..++
T Consensus 140 eI~iWDlnn~~tP~~~~-----~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~-~~~~~~S~l~ 213 (1049)
T KOG0307|consen 140 EILIWDLNKPETPFTPG-----SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDT-PGRMHCSVLA 213 (1049)
T ss_pred cEEEeccCCcCCCCCCC-----CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccC-CCccceeeee
Confidence 99999998744321101 123457899999997 4567899999999999999988776633222 2234578999
Q ss_pred EeeccccCCccEEEEeecC---CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceE
Q 037555 205 WVGLDRQKNHGFLAVGMES---GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQ 281 (298)
Q Consensus 205 ~~~~~~~~~~~~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 281 (298)
|+|+.. ..|+++++| -.|.+||+|... ..+..+.+|...|.+|.|++.+. .+
T Consensus 214 WhP~~a----Tql~~As~dd~~PviqlWDlR~as---------------sP~k~~~~H~~GilslsWc~~D~------~l 268 (1049)
T KOG0307|consen 214 WHPDHA----TQLLVASGDDSAPVIQLWDLRFAS---------------SPLKILEGHQRGILSLSWCPQDP------RL 268 (1049)
T ss_pred eCCCCc----eeeeeecCCCCCceeEeecccccC---------------CchhhhcccccceeeeccCCCCc------hh
Confidence 999875 666766654 379999998543 22333668999999999999774 89
Q ss_pred EEeeeCCCcEEEeEec
Q 037555 282 LASCGADNTVRVFQVN 297 (298)
Q Consensus 282 l~s~~~d~~i~iw~~~ 297 (298)
|++++.|+.|.+|+.+
T Consensus 269 llSsgkD~~ii~wN~~ 284 (1049)
T KOG0307|consen 269 LLSSGKDNRIICWNPN 284 (1049)
T ss_pred hhcccCCCCeeEecCC
Confidence 9999999999999864
No 147
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.88 E-value=2.6e-21 Score=158.44 Aligned_cols=244 Identities=18% Similarity=0.304 Sum_probs=185.1
Q ss_pred CCCCCceeeeccCCCccccccc-------------CCCCceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEE
Q 037555 22 SVPDAVPAVFTEPPIEDQLAWH-------------TLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLW 88 (298)
Q Consensus 22 ~~~~~v~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw 88 (298)
+-........+.|...-.++.+ ..|.....+.||.+.|..++|+|.|.+|.+.+. |-+-+++
T Consensus 314 g~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~-----DQTTRlF 388 (764)
T KOG1063|consen 314 GSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSL-----DQTTRLF 388 (764)
T ss_pred ccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEecc-----ccceeee
Confidence 3344456666774433333333 234445567899999999999999999999965 7777777
Q ss_pred EcC----CceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCC-------------CC-cc----------
Q 037555 89 EVG----SWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG-------------TG-EI---------- 140 (298)
Q Consensus 89 ~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------------~~-~~---------- 140 (298)
-.- +...+..-+-|...++|++|-+....+++|.....+|+|+....- .. ..
T Consensus 389 a~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLG 468 (764)
T KOG1063|consen 389 ARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALG 468 (764)
T ss_pred cccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccccccc
Confidence 543 123444556788999999999877789999999999999864210 00 00
Q ss_pred ---------------------------------------------ceeeeEEeeccCCceEEEEEccCCCEEEEeeCCC-
Q 037555 141 ---------------------------------------------DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDK- 174 (298)
Q Consensus 141 ---------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg- 174 (298)
.++.+..+.+|...|++++.+|+++++|++....
T Consensus 469 LSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~ 548 (764)
T KOG1063|consen 469 LSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSL 548 (764)
T ss_pred ccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCC
Confidence 1222344567889999999999999999998643
Q ss_pred ----eEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCccee
Q 037555 175 ----TVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANII 250 (298)
Q Consensus 175 ----~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 250 (298)
.|++|+..+-.... .+..|.-.|+.++|+|++ .+|++.+.|+.+.+|....... ..
T Consensus 549 ~ehAvI~lw~t~~W~~~~---~L~~HsLTVT~l~FSpdg-----~~LLsvsRDRt~sl~~~~~~~~------------~e 608 (764)
T KOG1063|consen 549 KEHAVIRLWNTANWLQVQ---ELEGHSLTVTRLAFSPDG-----RYLLSVSRDRTVSLYEVQEDIK------------DE 608 (764)
T ss_pred ccceEEEEEeccchhhhh---eecccceEEEEEEECCCC-----cEEEEeecCceEEeeeeecccc------------hh
Confidence 49999999887776 778899999999999999 7999999999999999855422 12
Q ss_pred eeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 251 IRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 251 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
..+...+.|.-.|+++.|+|++ .+++|+|.|.+|++|...
T Consensus 609 ~~fa~~k~HtRIIWdcsW~pde-------~~FaTaSRDK~VkVW~~~ 648 (764)
T KOG1063|consen 609 FRFACLKAHTRIIWDCSWSPDE-------KYFATASRDKKVKVWEEP 648 (764)
T ss_pred hhhccccccceEEEEcccCccc-------ceeEEecCCceEEEEecc
Confidence 2233466799999999999999 789999999999999763
No 148
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.88 E-value=2.1e-20 Score=136.49 Aligned_cols=198 Identities=14% Similarity=0.138 Sum_probs=159.8
Q ss_pred ccccceeeeecCcccccccCCCCCceeeeccCCCcccccccCCCCceEEe----------ccCCCceEEEEEcCCCCEEE
Q 037555 3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHTLWPESHKL----------YGHGNELFSLCCDHQGKLVA 72 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~----------~~h~~~v~~~~~s~~~~~l~ 72 (298)
+..++.++...++++..+....+.+.. .+.|+ +++++....-+.+..+ ......+..+.|+-++.+++
T Consensus 86 dk~ir~wd~r~~k~~~~i~~~~eni~i-~wsp~-g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Ff 163 (313)
T KOG1407|consen 86 DKTIRIWDIRSGKCTARIETKGENINI-TWSPD-GEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFF 163 (313)
T ss_pred CceEEEEEeccCcEEEEeeccCcceEE-EEcCC-CCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEE
Confidence 345788889999999988887766665 34534 4444443222222111 23445688899987777666
Q ss_pred eEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccC
Q 037555 73 SSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHK 152 (298)
Q Consensus 73 ~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 152 (298)
.. ...|.|.|....+.+++..+++|.....|+.|+|+|++||+|+.|..+.+||++. ..+++.+..+.
T Consensus 164 lt-----~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E-------LiC~R~isRld 231 (313)
T KOG1407|consen 164 LT-----NGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE-------LICERCISRLD 231 (313)
T ss_pred Ee-----cCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH-------hhhheeecccc
Confidence 65 2379999999999999999999999999999999999999999999999999987 67788888899
Q ss_pred CceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecC
Q 037555 153 RIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMES 223 (298)
Q Consensus 153 ~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~d 223 (298)
-+|..+.|+.+|++||+++.|..|-|=+++++..+. .++ +.++...++|+|.. .+|+.++.|
T Consensus 232 wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~---eI~-~~~~t~tVAWHPk~-----~LLAyA~dd 293 (313)
T KOG1407|consen 232 WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVW---EIP-CEGPTFTVAWHPKR-----PLLAYACDD 293 (313)
T ss_pred CceEEEEeccCcceeeccCccceEEeEecccCCeEE---Eee-ccCCceeEEecCCC-----ceeeEEecC
Confidence 999999999999999999999999999999999887 554 78889999999998 688877765
No 149
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.88 E-value=3.5e-20 Score=146.94 Aligned_cols=242 Identities=16% Similarity=0.232 Sum_probs=179.0
Q ss_pred cccccCCCCCceeeeccCCCccccccc------CCCCceEE--eccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEE
Q 037555 17 LDTLESVPDAVPAVFTEPPIEDQLAWH------TLWPESHK--LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLW 88 (298)
Q Consensus 17 ~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw 88 (298)
.....+|.+....++..|... ++++. .+|..-+. -+.-.+++.|+.|+|.| .+|.| ...|...+.
T Consensus 361 ~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg-~va~G-----t~~G~w~V~ 433 (626)
T KOG2106|consen 361 TLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSG-VVAVG-----TATGRWFVL 433 (626)
T ss_pred eEEEEecccceeeEEcCCChh-heeeccCcceEEEccCCceeEEEEecCceeEeeccCcc-eEEEe-----eccceEEEE
Confidence 445678888888888885544 44443 57752111 12245789999999999 88888 458999999
Q ss_pred EcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEE
Q 037555 89 EVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFA 168 (298)
Q Consensus 89 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 168 (298)
|.++...+..-.. ..++++++|+|+|.+||.|+.|+.|.+|.+..... +..+.-+.+..+|+.+.|++|+++|.
T Consensus 434 d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~-----~y~r~~k~~gs~ithLDwS~Ds~~~~ 507 (626)
T KOG2106|consen 434 DTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR-----KYSRVGKCSGSPITHLDWSSDSQFLV 507 (626)
T ss_pred ecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc-----EEEEeeeecCceeEEeeecCCCceEE
Confidence 9998666655444 88999999999999999999999999999987542 22233333458999999999999999
Q ss_pred EeeCCCeEEEEEccCCcceeeeeecC---------------CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555 169 TGSRDKTVKIWAVENKSSVKQILALP---------------PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 169 ~~~~dg~i~~wd~~~~~~~~~~~~~~---------------~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 233 (298)
+-+.|-.|..|.....+....+...+ .+...|..++-+... .++++|.+.|.|++|....
T Consensus 508 ~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~-----~~lA~gdd~g~v~lf~yPc 582 (626)
T KOG2106|consen 508 SNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCE-----KLLASGDDFGKVHLFSYPC 582 (626)
T ss_pred eccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhh-----hhhhccccCceEEEEcccc
Confidence 99999999999443332222111111 122333444444444 7999999999999999876
Q ss_pred cccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 234 NRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
. +....+.++.+|...|.+++|.-+. ..|++.+.|.+|..|++
T Consensus 583 ~-------------s~rA~~he~~ghs~~vt~V~Fl~~d-------~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 583 S-------------SPRAPSHEYGGHSSHVTNVAFLCKD-------SHLISTGKDTSIMQWRL 625 (626)
T ss_pred C-------------CCcccceeeccccceeEEEEEeeCC-------ceEEecCCCceEEEEEe
Confidence 5 4444556688999999999999988 67887779999999987
No 150
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=7.1e-20 Score=145.22 Aligned_cols=239 Identities=15% Similarity=0.260 Sum_probs=175.8
Q ss_pred ccccccCCCCCceeeeccCCCccccccc-----CCCC--------ceEEeccCC-CceEEEEEcCCCCEEEeEeccCCCC
Q 037555 16 GLDTLESVPDAVPAVFTEPPIEDQLAWH-----TLWP--------ESHKLYGHG-NELFSLCCDHQGKLVASSCKAQSTA 81 (298)
Q Consensus 16 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~--------~~~~~~~h~-~~v~~~~~s~~~~~l~~~~~~~~~~ 81 (298)
.+...+...+.|....|.|-....+.+. ..|. ....+.++. .-|.|++|.++|. +++| +.
T Consensus 192 ~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTg-----DS 265 (626)
T KOG2106|consen 192 KLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITG-----DS 265 (626)
T ss_pred ccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEee-----cC
Confidence 3444455556667778886665555544 1231 223333333 5699999999987 5566 56
Q ss_pred ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc---------------------
Q 037555 82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI--------------------- 140 (298)
Q Consensus 82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------------------- 140 (298)
+|.|.||+..+.+..+....|.+.|.+++...+|.++ +|+.|+.|..||-.-....+.
T Consensus 266 ~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~v 344 (626)
T KOG2106|consen 266 GGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILV 344 (626)
T ss_pred CceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEE
Confidence 8999999998888777777999999999999999655 599999999999432211000
Q ss_pred ------------ceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeec
Q 037555 141 ------------DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGL 208 (298)
Q Consensus 141 ------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 208 (298)
.........+|....+.++.+|+.+.+++++.|+.+++|+ ..+... +.. ...++.++.|+|.
T Consensus 345 GTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~w---t~~-~~d~~~~~~fhps 418 (626)
T KOG2106|consen 345 GTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEW---TKI-IEDPAECADFHPS 418 (626)
T ss_pred eeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeE---EEE-ecCceeEeeccCc
Confidence 0111123346788899999999999999999999999999 334433 221 4577899999998
Q ss_pred cccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCC
Q 037555 209 DRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD 288 (298)
Q Consensus 209 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d 288 (298)
+ .++.|...|...+.|.++. ..+. +. . ...+++.++|+|+| .+||.++.|
T Consensus 419 g------~va~Gt~~G~w~V~d~e~~-------------~lv~-~~--~-d~~~ls~v~ysp~G-------~~lAvgs~d 468 (626)
T KOG2106|consen 419 G------VVAVGTATGRWFVLDTETQ-------------DLVT-IH--T-DNEQLSVVRYSPDG-------AFLAVGSHD 468 (626)
T ss_pred c------eEEEeeccceEEEEecccc-------------eeEE-EE--e-cCCceEEEEEcCCC-------CEEEEecCC
Confidence 6 8999999999999999874 2222 22 1 27899999999999 899999999
Q ss_pred CcEEEeEec
Q 037555 289 NTVRVFQVN 297 (298)
Q Consensus 289 ~~i~iw~~~ 297 (298)
+.|+||.++
T Consensus 469 ~~iyiy~Vs 477 (626)
T KOG2106|consen 469 NHIYIYRVS 477 (626)
T ss_pred CeEEEEEEC
Confidence 999999864
No 151
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.87 E-value=3.2e-21 Score=156.95 Aligned_cols=118 Identities=20% Similarity=0.408 Sum_probs=97.1
Q ss_pred CceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCccee----eeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEE
Q 037555 153 RIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVK----QILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIE 227 (298)
Q Consensus 153 ~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~ 227 (298)
..|+.+.|.| |...|+++++||.|++|.+..+.... .-..+..|...|+++.|+|-.. .+|++++.|-+|+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAa----dvLa~asyd~Ti~ 703 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAA----DVLAVASYDSTIE 703 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhh----hHhhhhhccceee
Confidence 3577888998 77899999999999999997643322 1114557889999999999764 7999999999999
Q ss_pred EEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 228 LWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 228 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+||+.+.... . .+.+|...|.+++|+|+| +.+++.+.||+|++|+-+
T Consensus 704 lWDl~~~~~~-------------~---~l~gHtdqIf~~AWSpdG-------r~~AtVcKDg~~rVy~Pr 750 (1012)
T KOG1445|consen 704 LWDLANAKLY-------------S---RLVGHTDQIFGIAWSPDG-------RRIATVCKDGTLRVYEPR 750 (1012)
T ss_pred eeehhhhhhh-------------h---eeccCcCceeEEEECCCC-------cceeeeecCceEEEeCCC
Confidence 9999876321 2 266899999999999999 899999999999999743
No 152
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=3.1e-20 Score=153.17 Aligned_cols=214 Identities=15% Similarity=0.209 Sum_probs=169.0
Q ss_pred EEeccCCCceEEEEEcCC-----------CCEEEeEeccCCCCceEEEEEEcCCce---ee----------ec-------
Q 037555 50 HKLYGHGNELFSLCCDHQ-----------GKLVASSCKAQSTAAAEIWLWEVGSWK---AM----------GR------- 98 (298)
Q Consensus 50 ~~~~~h~~~v~~~~~s~~-----------~~~l~~~~~~~~~~d~~i~vw~~~~~~---~~----------~~------- 98 (298)
..+--|...|..+.--|. ...+++++ .|++|++|++..+. .. +.
T Consensus 363 ~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCS-----sD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~ 437 (1080)
T KOG1408|consen 363 SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCS-----SDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQ 437 (1080)
T ss_pred eeeeeccceeeeeccccccccCcccccCCccceeEec-----CCCcEEEeecccccccceeecccchhhhhcCccccCch
Confidence 344457777777765541 12477774 59999999997521 00 00
Q ss_pred -----------------cccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEc
Q 037555 99 -----------------LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN 161 (298)
Q Consensus 99 -----------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 161 (298)
.-.....+.+++.+|+|++|++|..-|.+++|++.. .........|+.+|.++.++
T Consensus 438 q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~-------l~~~~~~eAHesEilcLeyS 510 (1080)
T KOG1408|consen 438 QIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQE-------LEYTCFMEAHESEILCLEYS 510 (1080)
T ss_pred hhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehh-------hhhhhheecccceeEEEeec
Confidence 011234689999999999999999999999999987 66677889999999999998
Q ss_pred c---CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc----------------------------
Q 037555 162 P---FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR---------------------------- 210 (298)
Q Consensus 162 ~---~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------------------------- 210 (298)
. ...+||+++.|..|++||....-.+ +.++.+|...|+++.|.-.+.
T Consensus 511 ~p~~~~kLLASasrdRlIHV~Dv~rny~l--~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~ 588 (1080)
T KOG1408|consen 511 FPVLTNKLLASASRDRLIHVYDVKRNYDL--VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFP 588 (1080)
T ss_pred CchhhhHhhhhccCCceEEEEecccccch--hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecc
Confidence 5 3478999999999999998653322 236777888888888877663
Q ss_pred ----------------cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCC
Q 037555 211 ----------------QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKP 274 (298)
Q Consensus 211 ----------------~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 274 (298)
.+...+++++++|..|+||++.++ +..+.|..-.+|.+....+...|.+
T Consensus 589 r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg-------------Kq~k~FKgs~~~eG~lIKv~lDPSg-- 653 (1080)
T KOG1408|consen 589 RHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG-------------KQVKSFKGSRDHEGDLIKVILDPSG-- 653 (1080)
T ss_pred ccccccccceEEEeeeCCCcceEEEEecccceEEEecccc-------------ceeeeecccccCCCceEEEEECCCc--
Confidence 555689999999999999999998 6777777777888889999999999
Q ss_pred CCCcceEEEeeeCCCcEEEeEec
Q 037555 275 KNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 275 ~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.+|++...|.++.++|+-
T Consensus 654 -----iY~atScsdktl~~~Df~ 671 (1080)
T KOG1408|consen 654 -----IYLATSCSDKTLCFVDFV 671 (1080)
T ss_pred -----cEEEEeecCCceEEEEec
Confidence 899999999999999973
No 153
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=9.8e-21 Score=142.47 Aligned_cols=253 Identities=17% Similarity=0.235 Sum_probs=172.8
Q ss_pred cccCCCCCceeeeccCCCc----cccccc------------CCCC-ceEEec--cCCCceEEEEEcCC----CCEEEeEe
Q 037555 19 TLESVPDAVPAVFTEPPIE----DQLAWH------------TLWP-ESHKLY--GHGNELFSLCCDHQ----GKLVASSC 75 (298)
Q Consensus 19 ~~~~~~~~v~~~~~~~~~~----~~~~~~------------~~~~-~~~~~~--~h~~~v~~~~~s~~----~~~l~~~~ 75 (298)
..+.|..+++.++|++-.+ +.+++. ..|- .++.+. .|......++|+-+ ..+||+++
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G 112 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG 112 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec
Confidence 3467778888888873221 222222 1111 122222 36778889999753 45788885
Q ss_pred ccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCC-CEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCc
Q 037555 76 KAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDD-NLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRI 154 (298)
Q Consensus 76 ~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 154 (298)
.-|.|+|.|+.+++....+.+|...|..+.++|+. +++++++.|..|++|++++... .....-+.+|.+.
T Consensus 113 -----~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~C----v~VfGG~egHrde 183 (385)
T KOG1034|consen 113 -----YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVC----VAVFGGVEGHRDE 183 (385)
T ss_pred -----ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeE----EEEecccccccCc
Confidence 48999999999999999999999999999999954 7999999999999999998321 1223344679999
Q ss_pred eEEEEEccCCCEEEEeeCCCeEEEEEccCCccee-------------------------eeeecCCCCCceEEEEEeecc
Q 037555 155 IWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVK-------------------------QILALPPFNSSVTALSWVGLD 209 (298)
Q Consensus 155 v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-------------------------~~~~~~~~~~~v~~~~~~~~~ 209 (298)
|.++.|++++.+|++++.|..|++|++...+... .+.+-..|...|-|+.|-.
T Consensus 184 VLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g-- 261 (385)
T KOG1034|consen 184 VLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG-- 261 (385)
T ss_pred EEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHh--
Confidence 9999999999999999999999999998422111 0001123555666666655
Q ss_pred ccCCccEEEEeecCCcEEEEEee-ecccccccCCCCCCcceeeeeccCCcccceEEEEEee--cCCCCCCCcceEEEeee
Q 037555 210 RQKNHGFLAVGMESGVIELWSIS-VNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWK--THEKPKNSRTMQLASCG 286 (298)
Q Consensus 210 ~~~~~~~l~~g~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~l~s~~ 286 (298)
+++++-+-++.|..|..- -.+......++......+.. +.-....|+-|.|. |-. .+||.+.
T Consensus 262 -----d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~---~~~~~c~iWfirf~~d~~~-------~~la~gn 326 (385)
T KOG1034|consen 262 -----DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGE---FDYPMCDIWFIRFAFDPWQ-------KMLALGN 326 (385)
T ss_pred -----hheeecccCceEEEEecchhhhhhhccCCCccceeeeeE---eccCccceEEEEEeecHHH-------HHHhhcc
Confidence 588888889999999872 22211111111111122222 33344455655554 545 7999999
Q ss_pred CCCcEEEeEec
Q 037555 287 ADNTVRVFQVN 297 (298)
Q Consensus 287 ~d~~i~iw~~~ 297 (298)
..|.|.+|||+
T Consensus 327 q~g~v~vwdL~ 337 (385)
T KOG1034|consen 327 QSGKVYVWDLD 337 (385)
T ss_pred CCCcEEEEECC
Confidence 99999999986
No 154
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=1.7e-20 Score=146.91 Aligned_cols=250 Identities=18% Similarity=0.189 Sum_probs=180.2
Q ss_pred cccccccCCCCCceeeeccCCCc-cccccc------CCCCc---------eEEeccCCCceEEEEEcCCC-CEEEeEecc
Q 037555 15 DGLDTLESVPDAVPAVFTEPPIE-DQLAWH------TLWPE---------SHKLYGHGNELFSLCCDHQG-KLVASSCKA 77 (298)
Q Consensus 15 ~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~------~~~~~---------~~~~~~h~~~v~~~~~s~~~-~~l~~~~~~ 77 (298)
....+...+...|.+++|.|... ..++.+ -+|+. +..+..|..+|.++.|+|.. ..+++.+
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS-- 254 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS-- 254 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeec--
Confidence 34556677888999999997766 344444 35643 66778899999999999954 4666664
Q ss_pred CCCCceEEEEEEcCCceeeeccc--cccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCce
Q 037555 78 QSTAAAEIWLWEVGSWKAMGRLQ--SHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRII 155 (298)
Q Consensus 78 ~~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v 155 (298)
.||+|++-|++.......+. .....+..+.|+.+...++.+..=|.+.+||.+.... ....+.-|...|
T Consensus 255 ---yDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s------~~~~~~lh~kKI 325 (498)
T KOG4328|consen 255 ---YDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGS------EYENLRLHKKKI 325 (498)
T ss_pred ---cCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCc------cchhhhhhhccc
Confidence 49999999998765433333 3556778888988877788888778999999998643 234456688899
Q ss_pred EEEEEccC-CCEEEEeeCCCeEEEEEccCCcceee-eeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555 156 WSCSWNPF-GHEFATGSRDKTVKIWAVENKSSVKQ-ILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 156 ~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 233 (298)
..++++|. ..+|++++.|++++|||++....... +.....|...|.+..|+|.+ ..|++.+.|..|+|||...
T Consensus 326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~-----gtl~TT~~D~~IRv~dss~ 400 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG-----GTLLTTCQDNEIRVFDSSC 400 (498)
T ss_pred ceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC-----CceEeeccCCceEEeeccc
Confidence 99999995 46899999999999999997655442 22344599999999999998 5699999999999999851
Q ss_pred cccccccCCCCCCcceeeeeccCCccc--ceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 234 NRTNDVSTPAPSTANIIIRFDPFACHV--AAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
-.... .+...+..-..+. -......|.|+. .+++.+-.-..|-|+|-
T Consensus 401 ~sa~~---------~p~~~I~Hn~~t~RwlT~fKA~W~P~~-------~li~vg~~~r~IDv~~~ 449 (498)
T KOG4328|consen 401 ISAKD---------EPLGTIPHNNRTGRWLTPFKAAWDPDY-------NLIVVGRYPRPIDVFDG 449 (498)
T ss_pred ccccC---------CccceeeccCcccccccchhheeCCCc-------cEEEEeccCcceeEEcC
Confidence 10000 1111111000111 123456799988 89999988888888763
No 155
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.86 E-value=7.7e-20 Score=141.22 Aligned_cols=147 Identities=20% Similarity=0.377 Sum_probs=119.4
Q ss_pred CCCceEEEEEcCCCC-EEEeEeccCCCCceEEEEEEcCCce---------eeeccccccccEEEEEEcCCCCEEEEEeCC
Q 037555 55 HGNELFSLCCDHQGK-LVASSCKAQSTAAAEIWLWEVGSWK---------AMGRLQSHSLTVTQIRFSHDDNLLLSVSRD 124 (298)
Q Consensus 55 h~~~v~~~~~s~~~~-~l~~~~~~~~~~d~~i~vw~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 124 (298)
...+|..+.|.++.. .|++|+ .|..|++|.++.+. .+..+..|...|+++.|+|+|.++++|+.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G-----~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~ 86 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAG-----GDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDG 86 (434)
T ss_pred CCCceEEEEeccCcccceeccc-----CccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCC
Confidence 346899999998776 999994 59999999986432 234567899999999999999999999999
Q ss_pred CeEEEEEeccCCC---------CccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCC
Q 037555 125 RQFSVFAIQRTGT---------GEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPP 195 (298)
Q Consensus 125 g~i~iwd~~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 195 (298)
|.+.+|....... ....+...+.+.+|...|..++|+|+++++++++-|..+++||+..+.... .+.+
T Consensus 87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~---~~~d 163 (434)
T KOG1009|consen 87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLA---ILDD 163 (434)
T ss_pred ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEe---eccc
Confidence 9999998762110 112366677888899999999999999999999999999999999887766 5556
Q ss_pred CCCceEEEEEeecc
Q 037555 196 FNSSVTALSWVGLD 209 (298)
Q Consensus 196 ~~~~v~~~~~~~~~ 209 (298)
|...+..++|.|.+
T Consensus 164 h~~yvqgvawDpl~ 177 (434)
T KOG1009|consen 164 HEHYVQGVAWDPLN 177 (434)
T ss_pred cccccceeecchhh
Confidence 66677777776655
No 156
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.86 E-value=1.1e-19 Score=136.46 Aligned_cols=222 Identities=19% Similarity=0.259 Sum_probs=172.7
Q ss_pred eccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCc---eeeeccccccccEEEEEEcCCCCEEEEEeCCCeEE
Q 037555 52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSW---KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFS 128 (298)
Q Consensus 52 ~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 128 (298)
+.--..+|+|.+|+++++.+|.+. ....|.||..... +...++..|...|+.+.|+|..+.|++|+.|..-+
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~-----~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnay 80 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSP-----NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAY 80 (361)
T ss_pred eeeccCceeeeeecCCCceEEecc-----CCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcc
Confidence 333467999999999999999994 4788999987654 46778889999999999999999999999999999
Q ss_pred EEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeee-eecCCCCCceEEEEEee
Q 037555 129 VFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQI-LALPPFNSSVTALSWVG 207 (298)
Q Consensus 129 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~~~~~~v~~~~~~~ 207 (298)
+|....+.. +++...+..++...+++.|+|.++.|++|+....|.+|-++..+..--- ..-..+.+.|+++.|+|
T Consensus 81 Vw~~~~~~~----WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp 156 (361)
T KOG1523|consen 81 VWTQPSGGT----WKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP 156 (361)
T ss_pred ccccCCCCe----eccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccC
Confidence 999854332 6677777889999999999999999999999999999998865543100 01234678899999999
Q ss_pred ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeee----eccCCcccceEEEEEeecCCCCCCCcceEEE
Q 037555 208 LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIR----FDPFACHVAAVNRMAWKTHEKPKNSRTMQLA 283 (298)
Q Consensus 208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 283 (298)
++ -+|++|+.|+..+|+...-...... +.+.++..-.. +.++....+.|..+.|+|+| ..|+
T Consensus 157 nn-----VLlaaGs~D~k~rVfSayIK~Vdek--pap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG-------~~la 222 (361)
T KOG1523|consen 157 NN-----VLLAAGSTDGKCRVFSAYIKGVDEK--PAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG-------NRLA 222 (361)
T ss_pred Cc-----ceecccccCcceeEEEEeeeccccC--CCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC-------CEee
Confidence 98 7999999999999998753321111 12222222221 22233467899999999999 8999
Q ss_pred eeeCCCcEEEeEe
Q 037555 284 SCGADNTVRVFQV 296 (298)
Q Consensus 284 s~~~d~~i~iw~~ 296 (298)
-.+.|+++.+=|-
T Consensus 223 wv~Hds~v~~~da 235 (361)
T KOG1523|consen 223 WVGHDSTVSFVDA 235 (361)
T ss_pred EecCCCceEEeec
Confidence 9999999987653
No 157
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.86 E-value=4.7e-21 Score=151.91 Aligned_cols=195 Identities=15% Similarity=0.271 Sum_probs=165.4
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCC
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 136 (298)
-..++++.+||.+..++++. ||.|.|||+.+...++.|++|...+.||.+++||..|-+|+-|.+|+.||++...
T Consensus 510 paCyALa~spDakvcFsccs-----dGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregr 584 (705)
T KOG0639|consen 510 PACYALAISPDAKVCFSCCS-----DGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGR 584 (705)
T ss_pred hhhhhhhcCCccceeeeecc-----CCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhh
Confidence 45778999999999888865 9999999999999999999999999999999999999999999999999999732
Q ss_pred CCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccE
Q 037555 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGF 216 (298)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 216 (298)
.+... .....|.++..+|.+..+++|-.++.+.+......+.. .+..|.+-|.++.|.+.| .+
T Consensus 585 -------qlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ky----qlhlheScVLSlKFa~cG-----kw 647 (705)
T KOG0639|consen 585 -------QLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY----QLHLHESCVLSLKFAYCG-----KW 647 (705)
T ss_pred -------hhhhh-hhhhhheecccCCCccceeeecccCcEEEEecCCccce----eecccccEEEEEEecccC-----ce
Confidence 22221 23578999999999999999999999888877654432 455688999999999999 89
Q ss_pred EEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 217 LAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 217 l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
+++.+.|.-+..|.+.-+ ..+.... ....|.++..+.|. .+++||+.|....+|.+
T Consensus 648 fvStGkDnlLnawrtPyG-------------asiFqsk----E~SsVlsCDIS~dd-------kyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 648 FVSTGKDNLLNAWRTPYG-------------ASIFQSK----ESSSVLSCDISFDD-------KYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeecCchhhhhhccCccc-------------cceeecc----ccCcceeeeeccCc-------eEEEecCCCcceEEEEE
Confidence 999999999999988766 3333322 46789999999999 89999999999999986
Q ss_pred c
Q 037555 297 N 297 (298)
Q Consensus 297 ~ 297 (298)
.
T Consensus 704 ~ 704 (705)
T KOG0639|consen 704 I 704 (705)
T ss_pred e
Confidence 4
No 158
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=1.8e-20 Score=141.04 Aligned_cols=218 Identities=16% Similarity=0.263 Sum_probs=158.1
Q ss_pred ceEEeccCCCceEEEEEcCCC-CEEEeEeccCCCCceEEEEEEcCCceeeecc---ccccccEEEEEEcCCCCEEEEEeC
Q 037555 48 ESHKLYGHGNELFSLCCDHQG-KLVASSCKAQSTAAAEIWLWEVGSWKAMGRL---QSHSLTVTQIRFSHDDNLLLSVSR 123 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~-~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~ 123 (298)
....+.+|...|+.+.|.|+. +++++++ .|..|++|++++..++..| .+|...|.++.|+++|.+|++++.
T Consensus 127 ~~~~~~ghG~sINeik~~p~~~qlvls~S-----kD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGm 201 (385)
T KOG1034|consen 127 CSKNYRGHGGSINEIKFHPDRPQLVLSAS-----KDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGM 201 (385)
T ss_pred hccceeccCccchhhhcCCCCCcEEEEec-----CCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCC
Confidence 456778999999999999965 5777774 4899999999999998876 579999999999999999999999
Q ss_pred CCeEEEEEeccCCCCcc---------------------ceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEcc
Q 037555 124 DRQFSVFAIQRTGTGEI---------------------DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVE 182 (298)
Q Consensus 124 dg~i~iwd~~~~~~~~~---------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~ 182 (298)
|..|++|++...+-... ......+-.-|...|-|+.|- |+++++-+-++.|..|..-
T Consensus 202 Dhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pg 279 (385)
T KOG1034|consen 202 DHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPG 279 (385)
T ss_pred cceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecc
Confidence 99999999984321000 000011223467777788776 6889999999999999872
Q ss_pred -CCccee----------eeeecCCCCCceEEE--EEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcce
Q 037555 183 -NKSSVK----------QILALPPFNSSVTAL--SWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANI 249 (298)
Q Consensus 183 -~~~~~~----------~~~~~~~~~~~v~~~--~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 249 (298)
-.+.+. .+..+.-....|+-+ +|.|.. ..|+.|.+.|.|.+||++..+....
T Consensus 280 kl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-----~~la~gnq~g~v~vwdL~~~ep~~~---------- 344 (385)
T KOG1034|consen 280 KLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-----KMLALGNQSGKVYVWDLDNNEPPKC---------- 344 (385)
T ss_pred hhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH-----HHHhhccCCCcEEEEECCCCCCccC----------
Confidence 111111 111222223344444 445555 7999999999999999998754311
Q ss_pred eeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 250 IIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 250 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
..+. .......|...+|+.|+ ..|+....|++|.-||-
T Consensus 345 -ttl~-~s~~~~tVRQ~sfS~dg-------s~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 345 -TTLT-HSKSGSTVRQTSFSRDG-------SILVLVCDDGTVWRWDR 382 (385)
T ss_pred -ceEE-eccccceeeeeeecccC-------cEEEEEeCCCcEEEEEe
Confidence 1111 11235689999999999 89999999999998884
No 159
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.86 E-value=2.6e-20 Score=147.47 Aligned_cols=197 Identities=14% Similarity=0.231 Sum_probs=158.4
Q ss_pred eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCC
Q 037555 59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTG 138 (298)
Q Consensus 59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 138 (298)
-.|++......++++| +..+.|+|||++...+.+.+.+|...|+++.++....+|++++..|.|.|..+.+...
T Consensus 82 ~~Cv~~~s~S~y~~sg-----G~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~- 155 (673)
T KOG4378|consen 82 AFCVACASQSLYEISG-----GQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK- 155 (673)
T ss_pred HHHHhhhhcceeeecc-----CcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc-
Confidence 3455555555788888 4589999999996666677889999999999999999999999999999999887432
Q ss_pred ccceeeeEEeecc-CCceEEEEEccCCC-EEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccE
Q 037555 139 EIDYQLIARQEAH-KRIIWSCSWNPFGH-EFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGF 216 (298)
Q Consensus 139 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 216 (298)
...+... ...|.-+.++|..+ +|.+++++|.|.+||+....+... -...|..+...++|+|..+ .+
T Consensus 156 ------tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~--~~~~HsAP~~gicfspsne----~l 223 (673)
T KOG4378|consen 156 ------TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH--ASEAHSAPCRGICFSPSNE----AL 223 (673)
T ss_pred ------ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccc--hhhhccCCcCcceecCCcc----ce
Confidence 2233322 34567899999765 566788999999999998777652 2346899999999999885 78
Q ss_pred EEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 217 LAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 217 l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
|++.+.|..|.+||.+.. .....+. ...+...++|.++| .+|+.|...|.|..||+
T Consensus 224 ~vsVG~Dkki~~yD~~s~-------------~s~~~l~----y~~Plstvaf~~~G-------~~L~aG~s~G~~i~YD~ 279 (673)
T KOG4378|consen 224 LVSVGYDKKINIYDIRSQ-------------ASTDRLT----YSHPLSTVAFSECG-------TYLCAGNSKGELIAYDM 279 (673)
T ss_pred EEEecccceEEEeecccc-------------cccceee----ecCCcceeeecCCc-------eEEEeecCCceEEEEec
Confidence 999999999999999865 2222222 46788999999999 89999999999999998
Q ss_pred c
Q 037555 297 N 297 (298)
Q Consensus 297 ~ 297 (298)
+
T Consensus 280 R 280 (673)
T KOG4378|consen 280 R 280 (673)
T ss_pred c
Confidence 6
No 160
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.5e-21 Score=166.76 Aligned_cols=209 Identities=15% Similarity=0.256 Sum_probs=164.6
Q ss_pred eEEeccCCCceEEEEEcCCCC-EEEeEeccCCCCceEEEEEEcCCceeeecc--ccccccEEEEEEcCC-CCEEEEEeCC
Q 037555 49 SHKLYGHGNELFSLCCDHQGK-LVASSCKAQSTAAAEIWLWEVGSWKAMGRL--QSHSLTVTQIRFSHD-DNLLLSVSRD 124 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~-~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~--~~~~~~v~~~~~~~~-~~~l~~~~~d 124 (298)
+.+...|++.|..+.|++.+. .||+| +.+|.|.|||+...+.-... ....+.|.+++|+.. ...|++++.+
T Consensus 109 la~~~~h~G~V~gLDfN~~q~nlLASG-----a~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~s 183 (1049)
T KOG0307|consen 109 LATKSKHTGPVLGLDFNPFQGNLLASG-----ADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPS 183 (1049)
T ss_pred HhhhcccCCceeeeeccccCCceeecc-----CCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCC
Confidence 456678999999999999766 88888 56999999999875444333 235678999999874 4578889999
Q ss_pred CeEEEEEeccCCCCccceeeeEEeeccC--CceEEEEEccCC-CEEEEeeCC---CeEEEEEccCCcceeeeeecCCCCC
Q 037555 125 RQFSVFAIQRTGTGEIDYQLIARQEAHK--RIIWSCSWNPFG-HEFATGSRD---KTVKIWAVENKSSVKQILALPPFNS 198 (298)
Q Consensus 125 g~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~-~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~ 198 (298)
|.+.|||++.. +.+..+..+. ..+..++|+|+. ..+++++.| -.|.+||+|...... ..+.+|+.
T Consensus 184 g~~~iWDlr~~-------~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~--k~~~~H~~ 254 (1049)
T KOG0307|consen 184 GRAVIWDLRKK-------KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL--KILEGHQR 254 (1049)
T ss_pred CCceeccccCC-------CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch--hhhccccc
Confidence 99999999973 3344444443 347789999976 566666654 359999999755432 25678999
Q ss_pred ceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCc
Q 037555 199 SVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSR 278 (298)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 278 (298)
.|.++.|++.+. .++++++.|+.|.+|+..++ +.+.. +.....++..+.|+|..+
T Consensus 255 GilslsWc~~D~----~lllSsgkD~~ii~wN~~tg-------------Evl~~---~p~~~nW~fdv~w~pr~P----- 309 (1049)
T KOG0307|consen 255 GILSLSWCPQDP----RLLLSSGKDNRIICWNPNTG-------------EVLGE---LPAQGNWCFDVQWCPRNP----- 309 (1049)
T ss_pred ceeeeccCCCCc----hhhhcccCCCCeeEecCCCc-------------eEeee---cCCCCcceeeeeecCCCc-----
Confidence 999999999885 79999999999999999987 44444 334678999999999885
Q ss_pred ceEEEeeeCCCcEEEeEec
Q 037555 279 TMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 279 ~~~l~s~~~d~~i~iw~~~ 297 (298)
..++.++.||.|.|+.+.
T Consensus 310 -~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 310 -SVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred -chhhhheeccceeeeeee
Confidence 689999999999999874
No 161
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2.7e-20 Score=149.16 Aligned_cols=234 Identities=19% Similarity=0.303 Sum_probs=169.0
Q ss_pred ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecc-ccccccEEEEEEcC--CCCEEEEEeCC
Q 037555 48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRL-QSHSLTVTQIRFSH--DDNLLLSVSRD 124 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~~d 124 (298)
.-..|.||++.|+|+.|+.+|.+|++| ++|-.+.|||....+.+..+ .+|...|.++.|-| +..++++|..|
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SG-----SDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD 116 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASG-----SDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD 116 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeec-----CCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCc
Confidence 346688999999999999999999999 45899999999888888776 48999999999999 56689999999
Q ss_pred CeEEEEEeccCCCCccc---eeeeEEeeccCCceEEEEEccCC-CEEEEeeCCCeEEEEEccCCccee-------eeeec
Q 037555 125 RQFSVFAIQRTGTGEID---YQLIARQEAHKRIIWSCSWNPFG-HEFATGSRDKTVKIWAVENKSSVK-------QILAL 193 (298)
Q Consensus 125 g~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~-------~~~~~ 193 (298)
..|+++|+...+.+..+ ......+..|...|..++..|++ +.|.+++.||+|+-+|++...... .+..+
T Consensus 117 k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny 196 (758)
T KOG1310|consen 117 KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNY 196 (758)
T ss_pred ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHh
Confidence 99999999864433221 23344556788999999999988 899999999999999999743222 11111
Q ss_pred CCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccc-----cCCCCCCcceeeeeccCC-----c-c---
Q 037555 194 PPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDV-----STPAPSTANIIIRFDPFA-----C-H--- 259 (298)
Q Consensus 194 ~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-----~-~--- 259 (298)
...--...++..+|..+ .+|++|+.|...++||.+....+.. ...++....++.-+.+.. + .
T Consensus 197 ~~~lielk~ltisp~rp----~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~ 272 (758)
T KOG1310|consen 197 NPQLIELKCLTISPSRP----YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRY 272 (758)
T ss_pred chhhheeeeeeecCCCC----ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccc
Confidence 12223467899999886 8999999999999999643221111 111122223333332211 0 0
Q ss_pred cceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 260 VAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 260 ~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
-..++-+.|+|+|. .+|++-+.+ .|+++|++
T Consensus 273 ~~~~t~vtfnpNGt------ElLvs~~gE-hVYlfdvn 303 (758)
T KOG1310|consen 273 ITCCTYVTFNPNGT------ELLVSWGGE-HVYLFDVN 303 (758)
T ss_pred eeeeEEEEECCCCc------EEEEeeCCe-EEEEEeec
Confidence 11266789999985 677776654 68888874
No 162
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.5e-19 Score=141.78 Aligned_cols=201 Identities=9% Similarity=0.172 Sum_probs=161.7
Q ss_pred CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC--ceeeeccccccccEEEEEEcCCCC-EEEEEeCCCeEEEEEe
Q 037555 56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS--WKAMGRLQSHSLTVTQIRFSHDDN-LLLSVSRDRQFSVFAI 132 (298)
Q Consensus 56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~ 132 (298)
.+.|+++.|+|..+.|++++ .|+.++||.++. ...++.+.-...+|.+++|.|+|. .+++++....++.||+
T Consensus 213 ~~~I~sv~FHp~~plllvaG-----~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDl 287 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAG-----LDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDL 287 (514)
T ss_pred cCCceEEEecCCCceEEEec-----CCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeec
Confidence 46899999999999999995 599999999863 234455555678999999999998 8999999999999999
Q ss_pred ccCCCCccceeeeEEeeccC-CceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecccc
Q 037555 133 QRTGTGEIDYQLIARQEAHK-RIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQ 211 (298)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (298)
.+.+. ..+....++. ..+....++|++++|+..+..|.|.+....+++.+. .++ ..+.|..++|+.++
T Consensus 288 e~ak~-----~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~---s~K-ieG~v~~~~fsSds-- 356 (514)
T KOG2055|consen 288 ETAKV-----TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELIT---SFK-IEGVVSDFTFSSDS-- 356 (514)
T ss_pred ccccc-----ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhh---eee-eccEEeeEEEecCC--
Confidence 87542 2233333333 356778899999999999999999999999988877 554 57889999999888
Q ss_pred CCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcE
Q 037555 212 KNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTV 291 (298)
Q Consensus 212 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i 291 (298)
..|++.+.+|.|.+||++.. .++..+..-. .-.-++++.++++ .+||+|+..|.|
T Consensus 357 ---k~l~~~~~~GeV~v~nl~~~-------------~~~~rf~D~G--~v~gts~~~S~ng-------~ylA~GS~~GiV 411 (514)
T KOG2055|consen 357 ---KELLASGGTGEVYVWNLRQN-------------SCLHRFVDDG--SVHGTSLCISLNG-------SYLATGSDSGIV 411 (514)
T ss_pred ---cEEEEEcCCceEEEEecCCc-------------ceEEEEeecC--ccceeeeeecCCC-------ceEEeccCcceE
Confidence 67888888999999999987 6666665321 1233567888998 899999999999
Q ss_pred EEeEec
Q 037555 292 RVFQVN 297 (298)
Q Consensus 292 ~iw~~~ 297 (298)
.|||.+
T Consensus 412 NIYd~~ 417 (514)
T KOG2055|consen 412 NIYDGN 417 (514)
T ss_pred EEeccc
Confidence 999853
No 163
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.85 E-value=4.6e-19 Score=145.41 Aligned_cols=209 Identities=14% Similarity=0.183 Sum_probs=153.8
Q ss_pred ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCC
Q 037555 58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGT 137 (298)
Q Consensus 58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 137 (298)
.|..++|-|||..|+.+. +..+.+||.+.|..++++++|...|.+++|+.||+.+++|+.|..|.+|.....+.
T Consensus 14 ci~d~afkPDGsqL~lAA------g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA------GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI 87 (1081)
T ss_pred chheeEECCCCceEEEec------CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccce
Confidence 799999999999888773 67899999999999999999999999999999999999999999999998764321
Q ss_pred Ccc-ceeeeE---------------------------Eeec--cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcce
Q 037555 138 GEI-DYQLIA---------------------------RQEA--HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSV 187 (298)
Q Consensus 138 ~~~-~~~~~~---------------------------~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 187 (298)
... ....++ .... ....+.+++|..||++|+.|-.+|+|.+-+-. ++..
T Consensus 88 LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek 166 (1081)
T KOG1538|consen 88 LKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEK 166 (1081)
T ss_pred eeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcc
Confidence 100 000000 0001 12457788899999999999999999987543 3333
Q ss_pred eeeeecCCCCCceEEEEEeeccc-----------------------------------------cCCccEEEEeecCCcE
Q 037555 188 KQILALPPFNSSVTALSWVGLDR-----------------------------------------QKNHGFLAVGMESGVI 226 (298)
Q Consensus 188 ~~~~~~~~~~~~v~~~~~~~~~~-----------------------------------------~~~~~~l~~g~~dg~i 226 (298)
..+...-+.+++|.+++|+|... .+++++++.|+.|+.+
T Consensus 167 ~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L 246 (1081)
T KOG1538|consen 167 VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQL 246 (1081)
T ss_pred eEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCce
Confidence 33333345678899999999754 3345566666666666
Q ss_pred EEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 227 ELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 227 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
++|.... -.+.. ......+|++++..|++ +.++.|+.||+|-.|++-
T Consensus 247 ~~fTR~G--------------vrLGT---vg~~D~WIWtV~~~PNs-------Q~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 247 SLFTRDG--------------VRLGT---VGEQDSWIWTVQAKPNS-------QYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEEeecC--------------eEEee---ccccceeEEEEEEccCC-------ceEEEEEccCeeehhhhH
Confidence 6654321 11222 33367899999999999 899999999999998864
No 164
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2e-19 Score=134.92 Aligned_cols=228 Identities=14% Similarity=0.244 Sum_probs=164.4
Q ss_pred ceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee
Q 037555 27 VPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA 95 (298)
Q Consensus 27 v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~ 95 (298)
..++.|+ +-+..++.+ -+|+ ..+.+.+|..+|++++||++|+.|++++. |..|.+||+..|.+
T Consensus 26 a~~~~Fs-~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~-----D~si~lwDl~~gs~ 99 (405)
T KOG1273|consen 26 AECCQFS-RWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSR-----DWSIKLWDLLKGSP 99 (405)
T ss_pred cceEEec-cCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecC-----CceeEEEeccCCCc
Confidence 5677777 667777776 2444 35678899999999999999999999965 89999999988876
Q ss_pred eeccccccccEEEEE-----------------------------------------------EcCCCCEEEEEeCCCeEE
Q 037555 96 MGRLQSHSLTVTQIR-----------------------------------------------FSHDDNLLLSVSRDRQFS 128 (298)
Q Consensus 96 ~~~~~~~~~~v~~~~-----------------------------------------------~~~~~~~l~~~~~dg~i~ 128 (298)
++.+. ..++|+.+. |.+.|+++++|...|.+.
T Consensus 100 l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkll 178 (405)
T KOG1273|consen 100 LKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLL 178 (405)
T ss_pred eeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEE
Confidence 65543 233333332 444478899999999999
Q ss_pred EEEeccCCCCccceeeeEEeeccC-CceEEEEEccCCCEEEEeeCCCeEEEEEccCCccee---eeeecCCCCC-----c
Q 037555 129 VFAIQRTGTGEIDYQLIARQEAHK-RIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVK---QILALPPFNS-----S 199 (298)
Q Consensus 129 iwd~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~---~~~~~~~~~~-----~ 199 (298)
++|..+ .+++..++-.. ..|..+.++..++.|+.-+.|..||.|+++.-.... .....+..+. .
T Consensus 179 v~~a~t-------~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~ 251 (405)
T KOG1273|consen 179 VYDAET-------LECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQ 251 (405)
T ss_pred EEecch-------heeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhh
Confidence 999887 56666665544 788999999999999999999999999987422110 0000011112 2
Q ss_pred eEEEEEeeccccCCccEEEEeec-CCcEEEEEeeecccccccCCCCCCcceeeeeccCCccc-ceEEEEEeecCCCCCCC
Q 037555 200 VTALSWVGLDRQKNHGFLAVGME-SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHV-AAVNRMAWKTHEKPKNS 277 (298)
Q Consensus 200 v~~~~~~~~~~~~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~ 277 (298)
-.+++|+.++ .|++.|+. -..++||....+ ..++.++ |.. ....++.|+|-.
T Consensus 252 Wk~ccfs~dg-----eYv~a~s~~aHaLYIWE~~~G-------------sLVKILh---G~kgE~l~DV~whp~r----- 305 (405)
T KOG1273|consen 252 WKKCCFSGDG-----EYVCAGSARAHALYIWEKSIG-------------SLVKILH---GTKGEELLDVNWHPVR----- 305 (405)
T ss_pred hhheeecCCc-----cEEEeccccceeEEEEecCCc-------------ceeeeec---CCchhheeecccccce-----
Confidence 3456677666 67777664 467999998887 6666653 333 567889999987
Q ss_pred cceEEEeeeCCCcEEEeEec
Q 037555 278 RTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 278 ~~~~l~s~~~d~~i~iw~~~ 297 (298)
..+++- ..|.++||...
T Consensus 306 --p~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 306 --PIIASI-ASGVVYIWAVV 322 (405)
T ss_pred --eeeeec-cCCceEEEEee
Confidence 677777 67899999753
No 165
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.1e-19 Score=137.43 Aligned_cols=194 Identities=17% Similarity=0.300 Sum_probs=150.6
Q ss_pred CEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcC--CCCEEEEEeCCCeEEEEEeccCCCCccceeeeE
Q 037555 69 KLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH--DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIA 146 (298)
Q Consensus 69 ~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 146 (298)
..+|++. ..|.|++||..+++.+..|.+++..+..++|.. ....+.+|+.||+|++||++.... ....
T Consensus 41 ~~vav~l-----Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e-----~a~~ 110 (376)
T KOG1188|consen 41 TAVAVSL-----SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE-----SARI 110 (376)
T ss_pred eeEEEEe-----cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh-----hhhe
Confidence 4566664 389999999999999999999999999999987 456899999999999999997542 2223
Q ss_pred EeeccC-CceEEEEEccCCCEEEEeeC----CCeEEEEEccCCcc-eeeeeecCCCCCceEEEEEeeccccCCccEEEEe
Q 037555 147 RQEAHK-RIIWSCSWNPFGHEFATGSR----DKTVKIWAVENKSS-VKQILALPPFNSSVTALSWVGLDRQKNHGFLAVG 220 (298)
Q Consensus 147 ~~~~~~-~~v~~~~~~~~~~~l~~~~~----dg~i~~wd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g 220 (298)
....+. .+..+++.+-.++.++.|+. +-.|.+||+|..++ +.. -...|...|+++.|+|..+ ++|++|
T Consensus 111 ~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~--~~eSH~DDVT~lrFHP~~p----nlLlSG 184 (376)
T KOG1188|consen 111 SWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ--LNESHNDDVTQLRFHPSDP----NLLLSG 184 (376)
T ss_pred eccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh--hhhhccCcceeEEecCCCC----CeEEee
Confidence 333343 45667777667788888863 66799999998776 332 2346899999999999987 899999
Q ss_pred ecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 221 MESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 221 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+.||-|.|||+....... ..+. .-.|...|..+.|..++- ..|.+-+...+..+|+++
T Consensus 185 SvDGLvnlfD~~~d~EeD---------aL~~----viN~~sSI~~igw~~~~y------krI~clTH~Etf~~~ele 242 (376)
T KOG1188|consen 185 SVDGLVNLFDTKKDNEED---------ALLH----VINHGSSIHLIGWLSKKY------KRIMCLTHMETFAIYELE 242 (376)
T ss_pred cccceEEeeecCCCcchh---------hHHH----hhcccceeeeeeeecCCc------ceEEEEEccCceeEEEcc
Confidence 999999999998652211 1222 224788899999998762 468888889999999875
No 166
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=1.1e-19 Score=147.86 Aligned_cols=205 Identities=17% Similarity=0.280 Sum_probs=143.8
Q ss_pred EEEEcC---CCCEEEeEeccCCCCceEEEEEEcCCcee------eeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 037555 61 SLCCDH---QGKLVASSCKAQSTAAAEIWLWEVGSWKA------MGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFA 131 (298)
Q Consensus 61 ~~~~s~---~~~~l~~~~~~~~~~d~~i~vw~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 131 (298)
+..|++ ....|+.+ .++|.|.++|....+. +..+..|...|.++.|.|....|++++.|.++++||
T Consensus 54 ~~sFs~~~n~eHiLava-----dE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wd 128 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVA-----DEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWD 128 (720)
T ss_pred cccccCCCCccceEEEe-----cCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeee
Confidence 466765 24567777 6799999999865432 244567999999999999777899999999999999
Q ss_pred eccCCCCccceeeeE--EeeccCCceEEEEEccC-CCEEEEeeCCCeEEEEEccCCcc--------------------ee
Q 037555 132 IQRTGTGEIDYQLIA--RQEAHKRIIWSCSWNPF-GHEFATGSRDKTVKIWAVENKSS--------------------VK 188 (298)
Q Consensus 132 ~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~--------------------~~ 188 (298)
+... .+.. .+.+|...|.+++|.|. ...|++|+.||.|.|||++.... ..
T Consensus 129 vk~s-------~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpsk 201 (720)
T KOG0321|consen 129 VKTS-------RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSK 201 (720)
T ss_pred eccc-------eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCc
Confidence 9974 3333 37899999999999994 57899999999999999985331 00
Q ss_pred ----eeeecCCCCCceEE---EEEeeccccCCccEEEEeec-CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcc-
Q 037555 189 ----QILALPPFNSSVTA---LSWVGLDRQKNHGFLAVGME-SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACH- 259 (298)
Q Consensus 189 ----~~~~~~~~~~~v~~---~~~~~~~~~~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 259 (298)
.......+...|.+ +.+..+. ..|++++. |+.|+|||++........++ .....+..|
T Consensus 202 p~~kr~~k~kA~s~ti~ssvTvv~fkDe-----~tlaSaga~D~~iKVWDLRk~~~~~r~ep--------~~~~~~~t~s 268 (720)
T KOG0321|consen 202 PLKKRIRKWKAASNTIFSSVTVVLFKDE-----STLASAGAADSTIKVWDLRKNYTAYRQEP--------RGSDKYPTHS 268 (720)
T ss_pred hhhccccccccccCceeeeeEEEEEecc-----ceeeeccCCCcceEEEeecccccccccCC--------CcccCccCcc
Confidence 00011123333444 4455555 57888776 99999999998755443211 111112223
Q ss_pred --cceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 260 --VAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 260 --~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
...+.++.....| .+|.+.+.|+.|++|++.
T Consensus 269 krs~G~~nL~lDssG-------t~L~AsCtD~sIy~ynm~ 301 (720)
T KOG0321|consen 269 KRSVGQVNLILDSSG-------TYLFASCTDNSIYFYNMR 301 (720)
T ss_pred cceeeeEEEEecCCC-------CeEEEEecCCcEEEEecc
Confidence 4457777777777 555555559999999975
No 167
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.84 E-value=1.1e-19 Score=136.69 Aligned_cols=206 Identities=24% Similarity=0.390 Sum_probs=152.1
Q ss_pred CCceEEEEEc-------CCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc--ccc---cEEEEEEcCCCCEEEEEeC
Q 037555 56 GNELFSLCCD-------HQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS--HSL---TVTQIRFSHDDNLLLSVSR 123 (298)
Q Consensus 56 ~~~v~~~~~s-------~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~--~~~---~v~~~~~~~~~~~l~~~~~ 123 (298)
...|...+|- |+..++|+.+. +.-|++||.-+|+....+.+ |.. ...+++|+|||..|++|-
T Consensus 104 g~tvydy~wYs~M~s~qP~t~l~a~ssr-----~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy- 177 (406)
T KOG2919|consen 104 GETVYDYCWYSRMKSDQPSTNLFAVSSR-----DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY- 177 (406)
T ss_pred CCEEEEEEeeeccccCCCccceeeeccc-----cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-
Confidence 3457777774 56677888854 88899999999998877654 333 457899999999988765
Q ss_pred CCeEEEEEeccCCCCccceeee-EEeeccCCceEEEEEccCC-CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceE
Q 037555 124 DRQFSVFAIQRTGTGEIDYQLI-ARQEAHKRIIWSCSWNPFG-HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVT 201 (298)
Q Consensus 124 dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~ 201 (298)
...|++||+..+.........+ +...+..+.|.+++|+|.. ..++.++...++-||.-....++. .+.+|.+.|+
T Consensus 178 krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~---llggh~gGvT 254 (406)
T KOG2919|consen 178 KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQ---LLGGHGGGVT 254 (406)
T ss_pred cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCcee---eecccCCCee
Confidence 6799999995544322111111 1123346788999999954 589999999999999888877777 6668999999
Q ss_pred EEEEeeccccCCccEEEEeec-CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccc-eEEEEEe--ecCCCCCCC
Q 037555 202 ALSWVGLDRQKNHGFLAVGME-SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVA-AVNRMAW--KTHEKPKNS 277 (298)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~--~~~~~~~~~ 277 (298)
.++|++++ +.|++|.. |-.|-.||++..+ .++.. +..|.. .=..|-| .|.+
T Consensus 255 hL~~~edG-----n~lfsGaRk~dkIl~WDiR~~~------------~pv~~---L~rhv~~TNQRI~FDld~~~----- 309 (406)
T KOG2919|consen 255 HLQWCEDG-----NKLFSGARKDDKILCWDIRYSR------------DPVYA---LERHVGDTNQRILFDLDPKG----- 309 (406)
T ss_pred eEEeccCc-----CeecccccCCCeEEEEeehhcc------------chhhh---hhhhccCccceEEEecCCCC-----
Confidence 99999999 78888875 6789999999754 22333 334544 2234444 4666
Q ss_pred cceEEEeeeCCCcEEEeEec
Q 037555 278 RTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 278 ~~~~l~s~~~d~~i~iw~~~ 297 (298)
++|++|+.||.|++||++
T Consensus 310 --~~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 310 --EILASGDTDGSVRVWDLK 327 (406)
T ss_pred --ceeeccCCCccEEEEecC
Confidence 899999999999999985
No 168
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.84 E-value=2.8e-19 Score=132.67 Aligned_cols=240 Identities=18% Similarity=0.287 Sum_probs=172.9
Q ss_pred cCCCCCceeeeccCCCc----cccccc----CCCCce--------------EEeccCCCceEEEEEcC-CCCEEEeEecc
Q 037555 21 ESVPDAVPAVFTEPPIE----DQLAWH----TLWPES--------------HKLYGHGNELFSLCCDH-QGKLVASSCKA 77 (298)
Q Consensus 21 ~~~~~~v~~~~~~~~~~----~~~~~~----~~~~~~--------------~~~~~h~~~v~~~~~s~-~~~~l~~~~~~ 77 (298)
..|+-+++.+.|.|+.. +.+++. ++|... .+-..+..++++..|+. +.+++.+++
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS-- 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS-- 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec--
Confidence 37888889999987653 445554 577421 11235678999999987 556777774
Q ss_pred CCCCceEEEEEEcCCcee---eeccccccccEEEEEEcCCC-CEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCC
Q 037555 78 QSTAAAEIWLWEVGSWKA---MGRLQSHSLTVTQIRFSHDD-NLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKR 153 (298)
Q Consensus 78 ~~~~d~~i~vw~~~~~~~---~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 153 (298)
-|.+..|||++++.. ..++-+|...|..++|...+ +.|++.+.||.+++||++.... ...+.+-.....
T Consensus 171 ---iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH----STIIYE~p~~~~ 243 (364)
T KOG0290|consen 171 ---IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH----STIIYEDPSPST 243 (364)
T ss_pred ---ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc----ceEEecCCCCCC
Confidence 489999999998743 34466799999999999854 5899999999999999997553 222333222356
Q ss_pred ceEEEEEccCC-CEEEEeeC-CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEe
Q 037555 154 IIWSCSWNPFG-HEFATGSR-DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSI 231 (298)
Q Consensus 154 ~v~~~~~~~~~-~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~ 231 (298)
+...++|+++. +++|+-.. ...|.+.|+|.... .+..+..|++.|..++|.|... ..|.++++|..+.+||+
T Consensus 244 pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t--pva~L~~H~a~VNgIaWaPhS~----~hictaGDD~qaliWDl 317 (364)
T KOG0290|consen 244 PLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT--PVARLRNHQASVNGIAWAPHSS----SHICTAGDDCQALIWDL 317 (364)
T ss_pred cceeeccCcCCchHHhhhhcCCceEEEEEecCCCc--ceehhhcCcccccceEecCCCC----ceeeecCCcceEEEEec
Confidence 78899999854 67776554 45799999997543 3347889999999999999886 89999999999999999
Q ss_pred eecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEE
Q 037555 232 SVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRV 293 (298)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 293 (298)
........ ..++.. +. -.+.|+.+.|++..+ .+++.|.. +++.+
T Consensus 318 ~q~~~~~~-------~dPila---y~-a~~EVNqi~Ws~~~~------Dwiai~~~-kklei 361 (364)
T KOG0290|consen 318 QQMPRENG-------EDPILA---YT-AGGEVNQIQWSSSQP------DWIAICFG-KKLEI 361 (364)
T ss_pred ccccccCC-------CCchhh---hh-ccceeeeeeecccCC------CEEEEEec-CeeeE
Confidence 86533111 012222 22 467899999997653 68777763 44544
No 169
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.8e-19 Score=139.85 Aligned_cols=198 Identities=18% Similarity=0.252 Sum_probs=150.9
Q ss_pred EEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCc
Q 037555 60 FSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGE 139 (298)
Q Consensus 60 ~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 139 (298)
.+++|+++|..|+++ +.||.+|||+..+...+.....|...|.++.|+|||++|++.+.| ..+||+.+++.
T Consensus 148 k~vaf~~~gs~latg-----g~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~--- 218 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATG-----GTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA--- 218 (398)
T ss_pred eEEEEcCCCCEeeec-----cccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc---
Confidence 789999999999999 559999999988888888888899999999999999999999999 99999999852
Q ss_pred cceeeeEEee--ccCCceEEEEEccCC---C--EEEEeeCCCeEEEEEccCCccee--eeeecCCCCCceEEEEEeeccc
Q 037555 140 IDYQLIARQE--AHKRIIWSCSWNPFG---H--EFATGSRDKTVKIWAVENKSSVK--QILALPPFNSSVTALSWVGLDR 210 (298)
Q Consensus 140 ~~~~~~~~~~--~~~~~v~~~~~~~~~---~--~l~~~~~dg~i~~wd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~ 210 (298)
.+.... .-+.....+.|+.++ . .++....-+.|+.||+.....-. ...........|.+++.++++
T Consensus 219 ----~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dG- 293 (398)
T KOG0771|consen 219 ----ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDG- 293 (398)
T ss_pred ----hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCC-
Confidence 222222 223345667787766 2 33333445667777765432211 111222234579999999999
Q ss_pred cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCc
Q 037555 211 QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNT 290 (298)
Q Consensus 211 ~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~ 290 (298)
++++.|+.||.|-|++..+- +....+ -+.|...|+.+.|+|+. +++++.+.|..
T Consensus 294 ----kf~AlGT~dGsVai~~~~~l-------------q~~~~v--k~aH~~~VT~ltF~Pds-------r~~~svSs~~~ 347 (398)
T KOG0771|consen 294 ----KFLALGTMDGSVAIYDAKSL-------------QRLQYV--KEAHLGFVTGLTFSPDS-------RYLASVSSDNE 347 (398)
T ss_pred ----cEEEEeccCCcEEEEEecee-------------eeeEee--hhhheeeeeeEEEcCCc-------CcccccccCCc
Confidence 89999999999999999865 444444 34799999999999999 89999999998
Q ss_pred EEEeEec
Q 037555 291 VRVFQVN 297 (298)
Q Consensus 291 i~iw~~~ 297 (298)
+.+..+.
T Consensus 348 ~~v~~l~ 354 (398)
T KOG0771|consen 348 AAVTKLA 354 (398)
T ss_pred eeEEEEe
Confidence 8887664
No 170
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=6.2e-19 Score=142.63 Aligned_cols=224 Identities=18% Similarity=0.224 Sum_probs=151.9
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCC--EEEEEeCCCe
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDN--LLLSVSRDRQ 126 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~ 126 (298)
...+.||++.|.+|...|.|..|++| +.||+|+||.+.+++++.+++ ..+.|.+++|+|.+. .||++-. ..
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasG-----sdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~-~~ 465 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASG-----SDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVG-EC 465 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeec-----CCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEec-Cc
Confidence 46678999999999999999999999 459999999999999999887 567899999999665 4444433 33
Q ss_pred EEEEEeccCCCC----------------cc--------------ceeeeEEeeccCCceEEEEEccCCCEEEEeeCC---
Q 037555 127 FSVFAIQRTGTG----------------EI--------------DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD--- 173 (298)
Q Consensus 127 i~iwd~~~~~~~----------------~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--- 173 (298)
+.|.+..-+... .. ...-++..-.|...|..+.|+..|.+|++...+
T Consensus 466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~ 545 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGN 545 (733)
T ss_pred eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCc
Confidence 555543322100 00 000123334578899999999999999998654
Q ss_pred CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccccccc----------CCC
Q 037555 174 KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVS----------TPA 243 (298)
Q Consensus 174 g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~----------~~~ 243 (298)
..|.|+++.....+. .+....+.|.++.|+|..+ +|++++. ..|+|||+...+..... ..+
T Consensus 546 ~~VliHQLSK~~sQ~---PF~kskG~vq~v~FHPs~p-----~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msih 616 (733)
T KOG0650|consen 546 KSVLIHQLSKRKSQS---PFRKSKGLVQRVKFHPSKP-----YLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIH 616 (733)
T ss_pred ceEEEEecccccccC---chhhcCCceeEEEecCCCc-----eEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeec
Confidence 468999998766555 4444556778888888773 4444443 44666666443211100 000
Q ss_pred CCCcc-----------------eeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555 244 PSTAN-----------------IIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ 295 (298)
Q Consensus 244 ~~~~~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~ 295 (298)
+...+ ..+.+..+..|...+++++|++.- .++++|+.||++.|+-
T Consensus 617 p~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ry-------PLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 617 PNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRY-------PLFASGSDDGTVIVFH 678 (733)
T ss_pred CCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcccc-------ceeeeecCCCcEEEEe
Confidence 00000 001122356699999999999998 8999999999999874
No 171
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=7.5e-19 Score=135.66 Aligned_cols=230 Identities=15% Similarity=0.232 Sum_probs=159.4
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC------ceeeeccc-cccccEEEEEEcCCCCEEEEE
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS------WKAMGRLQ-SHSLTVTQIRFSHDDNLLLSV 121 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~ 121 (298)
.+.+.+|.+.|.++.|+.++++|++| +.|..+++|+++. .+++.... .|...|.|++|...+.++++|
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SG-----GDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG 123 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASG-----GDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSG 123 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeec-----CCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecC
Confidence 34567899999999999999999999 5699999999863 34444433 366899999999988999999
Q ss_pred eCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceE
Q 037555 122 SRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVT 201 (298)
Q Consensus 122 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~ 201 (298)
..+++|.+-|+.+... ..+.......+.|+.+..+|..+.|++.+.++.|.+||.+...................
T Consensus 124 ~~~~~VI~HDiEt~qs-----i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~ 198 (609)
T KOG4227|consen 124 ERWGTVIKHDIETKQS-----IYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFY 198 (609)
T ss_pred CCcceeEeeeccccee-----eeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccce
Confidence 9999999999997431 11222222345899999999999999999999999999987441111101111122222
Q ss_pred EEEEeeccc-----------------------------------------------------------------------
Q 037555 202 ALSWVGLDR----------------------------------------------------------------------- 210 (298)
Q Consensus 202 ~~~~~~~~~----------------------------------------------------------------------- 210 (298)
++.|+|..+
T Consensus 199 t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~ 278 (609)
T KOG4227|consen 199 TAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRC 278 (609)
T ss_pred eeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccc
Confidence 333333222
Q ss_pred -------cC---------------CccEEEEeecCCcEEEEEeeecccccccCC-------CCCCcceeeeeccCCcccc
Q 037555 211 -------QK---------------NHGFLAVGMESGVIELWSISVNRTNDVSTP-------APSTANIIIRFDPFACHVA 261 (298)
Q Consensus 211 -------~~---------------~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 261 (298)
++ +...+++|+.+-.|++|.+.........+. .+...-.-..+..+++|..
T Consensus 279 ~V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRS 358 (609)
T KOG4227|consen 279 FVLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRS 358 (609)
T ss_pred eeEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccc
Confidence 00 013477788888888888764332222110 1111122234555789999
Q ss_pred eEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555 262 AVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ 295 (298)
Q Consensus 262 ~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~ 295 (298)
.++.+.|+|.. ++|++.+..+.++||.
T Consensus 359 v~NQVRF~~H~-------~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 359 VPNQVRFSQHN-------NLLVSSGVENSFKLWS 385 (609)
T ss_pred cccceeecCCc-------ceEeccchhhheeccc
Confidence 99999999998 8999999999999995
No 172
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=4.5e-19 Score=140.57 Aligned_cols=194 Identities=15% Similarity=0.286 Sum_probs=158.2
Q ss_pred CCCCc-----eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccc-cccEEEEEEcCCCC-
Q 037555 44 TLWPE-----SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSH-SLTVTQIRFSHDDN- 116 (298)
Q Consensus 44 ~~~~~-----~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~- 116 (298)
++|+. .+.+++|+..|+++.++-...+||+++ ..|.|.|..+.++.....|... ...|.-+.|+|..+
T Consensus 104 kiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs-----~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~ 178 (673)
T KOG4378|consen 104 KIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVS-----DGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRF 178 (673)
T ss_pred eehhhHHHHHhhhccCCcceeEEEEecCCcceeEEec-----cCCcEEEEecccCccccceecCCCCeEEEeecccccce
Confidence 57863 567889999999999999999999995 4889999999988877777643 45667899999665
Q ss_pred EEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCC-CEEEEeeCCCeEEEEEccCCcceeeeeecCC
Q 037555 117 LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG-HEFATGSRDKTVKIWAVENKSSVKQILALPP 195 (298)
Q Consensus 117 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 195 (298)
+|.+++.+|.|.+||+... .+.......|..+...++|+|.. .+|++.+.|.+|.+||++...... .+.
T Consensus 179 lL~~asd~G~VtlwDv~g~------sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~---~l~- 248 (673)
T KOG4378|consen 179 LLSIASDKGAVTLWDVQGM------SPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTD---RLT- 248 (673)
T ss_pred eeEeeccCCeEEEEeccCC------CcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccc---eee-
Confidence 6678899999999999863 23345556799999999999954 678889999999999999776655 332
Q ss_pred CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555 196 FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE 272 (298)
Q Consensus 196 ~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 272 (298)
...+...++|.++| .+|+.|...|.|..||++..+ .++.. ...|...|++++|-|..
T Consensus 249 y~~Plstvaf~~~G-----~~L~aG~s~G~~i~YD~R~~k------------~Pv~v---~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 249 YSHPLSTVAFSECG-----TYLCAGNSKGELIAYDMRSTK------------APVAV---RSAHDASVTRVAFQPSP 305 (673)
T ss_pred ecCCcceeeecCCc-----eEEEeecCCceEEEEecccCC------------CCceE---eeecccceeEEEeeecc
Confidence 56788999999999 899999999999999999764 33333 34688999999998863
No 173
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.81 E-value=3.7e-19 Score=130.31 Aligned_cols=214 Identities=15% Similarity=0.187 Sum_probs=138.9
Q ss_pred ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc-cccccEEEEEEcCCCCEEEEEeCCCe
Q 037555 48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ-SHSLTVTQIRFSHDDNLLLSVSRDRQ 126 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~ 126 (298)
++..+++|.+.|+++.|-.+++ |.+| ...|.|++|++++.+.+..++ .|...|+.+.--|+ ..+.+-+.|+.
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg-----~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~ 78 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSG-----LSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPL 78 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcc-----cccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCce
Confidence 4677889999999999988776 7777 458999999998876665555 34555555555554 34445555555
Q ss_pred EEEEEecc------------------------------------------------------------------------
Q 037555 127 FSVFAIQR------------------------------------------------------------------------ 134 (298)
Q Consensus 127 i~iwd~~~------------------------------------------------------------------------ 134 (298)
+.+|++..
T Consensus 79 L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~ 158 (323)
T KOG0322|consen 79 LILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK 158 (323)
T ss_pred EEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec
Confidence 55555443
Q ss_pred --------------------------CCCC---ccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCc
Q 037555 135 --------------------------TGTG---EIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKS 185 (298)
Q Consensus 135 --------------------------~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 185 (298)
.... +...+.......|..+|.++.+.+.-..=++|+.+..+..|++....
T Consensus 159 ~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~ 238 (323)
T KOG0322|consen 159 DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHST 238 (323)
T ss_pred cccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecccc
Confidence 1100 00012222233455555555555433333444444455555554321
Q ss_pred ceeeee-ecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEE
Q 037555 186 SVKQIL-ALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVN 264 (298)
Q Consensus 186 ~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 264 (298)
....+. .+.-....+..+..-|++ +++++++.|++|+||..++. +++.. +.-|.+.|+
T Consensus 239 gslq~~~e~~lknpGv~gvrIRpD~-----KIlATAGWD~RiRVyswrtl-------------~pLAV---LkyHsagvn 297 (323)
T KOG0322|consen 239 GSLQIRKEITLKNPGVSGVRIRPDG-----KILATAGWDHRIRVYSWRTL-------------NPLAV---LKYHSAGVN 297 (323)
T ss_pred CcccccceEEecCCCccceEEccCC-----cEEeecccCCcEEEEEeccC-------------Cchhh---hhhhhccee
Confidence 111000 111123457778888888 89999999999999999887 44444 456999999
Q ss_pred EEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 265 RMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 265 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
+++|+|+. .++|+++.|++|.+|++
T Consensus 298 ~vAfspd~-------~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 298 AVAFSPDC-------ELMAAASKDARISLWKL 322 (323)
T ss_pred EEEeCCCC-------chhhhccCCceEEeeec
Confidence 99999998 79999999999999997
No 174
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.81 E-value=2.1e-17 Score=132.69 Aligned_cols=182 Identities=14% Similarity=0.140 Sum_probs=131.5
Q ss_pred CEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEE-EEEeCCCeEEEEEeccCCCCccceeeeEE
Q 037555 69 KLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLL-LSVSRDRQFSVFAIQRTGTGEIDYQLIAR 147 (298)
Q Consensus 69 ~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 147 (298)
..++++ ..|+.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||... ......
T Consensus 2 ~~~~s~-----~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~-------~~~~~~ 68 (300)
T TIGR03866 2 KAYVSN-----EKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLAT-------GEVIGT 68 (300)
T ss_pred cEEEEe-----cCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCC-------CcEEEe
Confidence 466777 458999999999998888887554 46789999999876 5667889999999886 333444
Q ss_pred eeccCCceEEEEEccCCCEEEEe-eCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCC-c
Q 037555 148 QEAHKRIIWSCSWNPFGHEFATG-SRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESG-V 225 (298)
Q Consensus 148 ~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg-~ 225 (298)
+..+.. +..++|+|+++.++++ +.++.|++||+++.+.+. .+. ....+.+++|+|++ .+++++..++ .
T Consensus 69 ~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~---~~~-~~~~~~~~~~~~dg-----~~l~~~~~~~~~ 138 (300)
T TIGR03866 69 LPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLA---EIP-VGVEPEGMAVSPDG-----KIVVNTSETTNM 138 (300)
T ss_pred ccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe---Eee-CCCCcceEEECCCC-----CEEEEEecCCCe
Confidence 443333 5678999999877655 568999999999876554 333 23446889999998 6888877765 4
Q ss_pred EEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEE-EeeeCCCcEEEeEec
Q 037555 226 IELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQL-ASCGADNTVRVFQVN 297 (298)
Q Consensus 226 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~iw~~~ 297 (298)
+.+||..+. .....+. ....+..++|+|++ .+| +++..++.|++||++
T Consensus 139 ~~~~d~~~~-------------~~~~~~~----~~~~~~~~~~s~dg-------~~l~~~~~~~~~v~i~d~~ 187 (300)
T TIGR03866 139 AHFIDTKTY-------------EIVDNVL----VDQRPRFAEFTADG-------KELWVSSEIGGTVSVIDVA 187 (300)
T ss_pred EEEEeCCCC-------------eEEEEEE----cCCCccEEEECCCC-------CEEEEEcCCCCEEEEEEcC
Confidence 677787654 2222221 12345679999998 666 555579999999974
No 175
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.80 E-value=1.3e-18 Score=142.02 Aligned_cols=199 Identities=17% Similarity=0.229 Sum_probs=150.0
Q ss_pred cCCCCEEEeEeccCCCCceEEEEEEcCCceee-e-cccc--ccccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccCCCCc
Q 037555 65 DHQGKLVASSCKAQSTAAAEIWLWEVGSWKAM-G-RLQS--HSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTGTGE 139 (298)
Q Consensus 65 s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~-~-~~~~--~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~ 139 (298)
+.+..++|+--. +..|.|-||+++....+ . .+.+ ....|+++.|.| |...|++++.||.|++|.+.......
T Consensus 588 can~~rvAVPL~---g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e 664 (1012)
T KOG1445|consen 588 CANNKRVAVPLA---GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE 664 (1012)
T ss_pred eeccceEEEEec---CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc
Confidence 334445554322 34689999999753221 1 1111 356799999999 77899999999999999998876655
Q ss_pred cceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEE
Q 037555 140 IDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLA 218 (298)
Q Consensus 140 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~ 218 (298)
....+...+..|...|+++.|+| -.+.|+++++|-+|++||+++.+... .+.+|.+.|..++|+|+| ..++
T Consensus 665 ~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~---~l~gHtdqIf~~AWSpdG-----r~~A 736 (1012)
T KOG1445|consen 665 NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYS---RLVGHTDQIFGIAWSPDG-----RRIA 736 (1012)
T ss_pred ccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhh---eeccCcCceeEEEECCCC-----ccee
Confidence 55677788899999999999999 45789999999999999999988777 788999999999999999 7999
Q ss_pred EeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCC----cEEEe
Q 037555 219 VGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADN----TVRVF 294 (298)
Q Consensus 219 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~----~i~iw 294 (298)
+.+.||+|+||+.++.+++.. .-... ....-..|.|.-++ ++++..|.|. .|.+|
T Consensus 737 tVcKDg~~rVy~Prs~e~pv~------------Eg~gp--vgtRgARi~wacdg-------r~viv~Gfdk~SeRQv~~Y 795 (1012)
T KOG1445|consen 737 TVCKDGTLRVYEPRSREQPVY------------EGKGP--VGTRGARILWACDG-------RIVIVVGFDKSSERQVQMY 795 (1012)
T ss_pred eeecCceEEEeCCCCCCCccc------------cCCCC--ccCcceeEEEEecC-------cEEEEecccccchhhhhhh
Confidence 999999999999987754321 11000 11233456788888 7888777664 35555
Q ss_pred E
Q 037555 295 Q 295 (298)
Q Consensus 295 ~ 295 (298)
|
T Consensus 796 ~ 796 (1012)
T KOG1445|consen 796 D 796 (1012)
T ss_pred h
Confidence 4
No 176
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=3.2e-18 Score=128.95 Aligned_cols=193 Identities=16% Similarity=0.211 Sum_probs=144.1
Q ss_pred cCCCce---EEEEEcCCCCEEEeEeccCCCCceEEEEEEc-CCceee---eccc----cccccEEEEEEcC-CCCEEEEE
Q 037555 54 GHGNEL---FSLCCDHQGKLVASSCKAQSTAAAEIWLWEV-GSWKAM---GRLQ----SHSLTVTQIRFSH-DDNLLLSV 121 (298)
Q Consensus 54 ~h~~~v---~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~-~~~~~~---~~~~----~~~~~v~~~~~~~-~~~~l~~~ 121 (298)
.|.+++ .+++|+|||..|++| ....|+++|+ +.|+.. .++. +..+-+.+++|+| +...++.+
T Consensus 153 dh~de~taAhsL~Fs~DGeqlfaG------ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~g 226 (406)
T KOG2919|consen 153 DHQDEYTAAHSLQFSPDGEQLFAG------YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVG 226 (406)
T ss_pred hhHHhhhhheeEEecCCCCeEeec------ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeee
Confidence 455544 489999999999998 3689999999 444322 1121 2367789999999 55589999
Q ss_pred eCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-CCeEEEEEccCCcceeeeeecCCCCC-c
Q 037555 122 SRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-DKTVKIWAVENKSSVKQILALPPFNS-S 199 (298)
Q Consensus 122 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~-~ 199 (298)
+....+-||.-.. ..++..+.+|.+.|+.+.|.++|+.|++|+. |-.|..||+|....+. ..+..|.. .
T Consensus 227 sY~q~~giy~~~~-------~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv--~~L~rhv~~T 297 (406)
T KOG2919|consen 227 SYGQRVGIYNDDG-------RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPV--YALERHVGDT 297 (406)
T ss_pred cccceeeeEecCC-------CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchh--hhhhhhccCc
Confidence 9998998888776 5677888899999999999999999999985 7789999999765432 24444433 3
Q ss_pred eEEEEE--eeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCC
Q 037555 200 VTALSW--VGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNS 277 (298)
Q Consensus 200 v~~~~~--~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 277 (298)
-..|.| .|.+ ++|++|+.||.|++||+...- . ....+..+...++.++++|--
T Consensus 298 NQRI~FDld~~~-----~~LasG~tdG~V~vwdlk~~g------------n---~~sv~~~~sd~vNgvslnP~m----- 352 (406)
T KOG2919|consen 298 NQRILFDLDPKG-----EILASGDTDGSVRVWDLKDLG------------N---EVSVTGNYSDTVNGVSLNPIM----- 352 (406)
T ss_pred cceEEEecCCCC-----ceeeccCCCccEEEEecCCCC------------C---cccccccccccccceecCccc-----
Confidence 334444 4555 899999999999999998631 1 111245688899999999987
Q ss_pred cceEEEeeeCC
Q 037555 278 RTMQLASCGAD 288 (298)
Q Consensus 278 ~~~~l~s~~~d 288 (298)
.+++|++..
T Consensus 353 --pilatssGq 361 (406)
T KOG2919|consen 353 --PILATSSGQ 361 (406)
T ss_pred --ceeeeccCc
Confidence 677777643
No 177
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=2.2e-18 Score=130.51 Aligned_cols=228 Identities=13% Similarity=0.184 Sum_probs=158.4
Q ss_pred ceEEeccCCCceEEEEEcC--CCCEEEeEeccCCCCceEEEEEEcCCceeeec--ccccc-ccEEEEEEcCCCCEEEEEe
Q 037555 48 ESHKLYGHGNELFSLCCDH--QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR--LQSHS-LTVTQIRFSHDDNLLLSVS 122 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~--~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~--~~~~~-~~v~~~~~~~~~~~l~~~~ 122 (298)
.+..++++...++.+.|.. ....+.+++ .||+|++||+++...... +.++. .+..+++....++.++.|.
T Consensus 62 ~l~~fk~~~~~~N~vrf~~~ds~h~v~s~s-----sDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~Gt 136 (376)
T KOG1188|consen 62 LLEEFKGPPATTNGVRFISCDSPHGVISCS-----SDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGT 136 (376)
T ss_pred hhheecCCCCcccceEEecCCCCCeeEEec-----cCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEecc
Confidence 4677888999999999976 455677774 499999999987765544 34454 4566777766777787775
Q ss_pred ----CCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCC
Q 037555 123 ----RDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFN 197 (298)
Q Consensus 123 ----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~ 197 (298)
.+-.+.+||++..+. .+-.....|...|++++|+| +-++|++||.||.|.+||++....--.+...-.+.
T Consensus 137 E~~~s~A~v~lwDvR~~qq-----~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~ 211 (376)
T KOG1188|consen 137 ELTRSDASVVLWDVRSEQQ-----LLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHG 211 (376)
T ss_pred ccccCceEEEEEEeccccc-----hhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhccc
Confidence 367899999997532 12334467999999999999 45899999999999999998654322222222367
Q ss_pred CceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCC------------------------C--------
Q 037555 198 SSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAP------------------------S-------- 245 (298)
Q Consensus 198 ~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~------------------------~-------- 245 (298)
..|.++.|...+- ..|.+-+......+|+++.+........+. .
T Consensus 212 sSI~~igw~~~~y----krI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~ 287 (376)
T KOG1188|consen 212 SSIHLIGWLSKKY----KRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTD 287 (376)
T ss_pred ceeeeeeeecCCc----ceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccc
Confidence 7799999998763 467777788889999887654221111000 0
Q ss_pred -Ccceeee------------eccCC-cccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 246 -TANIIIR------------FDPFA-CHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 246 -~~~~~~~------------~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
.-..+.. ...+. +|...|.++.|...+ .++.|||+||.+.+|..
T Consensus 288 ~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~-------~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 288 SNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKN-------DVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cCceeEEEeeecccccccCccccccCCcHHHHHHHhhhccc-------ceeeccCCCceEEEEec
Confidence 0000011 11122 366778888888777 89999999999999973
No 178
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.80 E-value=7.4e-20 Score=153.17 Aligned_cols=206 Identities=15% Similarity=0.304 Sum_probs=156.0
Q ss_pred ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeE
Q 037555 48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF 127 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 127 (298)
.++.+.+|.+.|+|..|...|.++++| ++|..++||..++..++..+.+|.+.|+.++.+.+..++++++.|..|
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitg-----sdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITG-----SDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVI 256 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeec-----CccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceE
Confidence 356678999999999999999999999 569999999999999999999999999999999998899999999999
Q ss_pred EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC-CCCCceEEEEEe
Q 037555 128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP-PFNSSVTALSWV 206 (298)
Q Consensus 128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~~~~v~~~~~~ 206 (298)
++|.+.. ..++..+.+|.+.|++++|+|-. +.+.||++++||.+-...+..-..+. ....-+.++.|.
T Consensus 257 rvWrl~~-------~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~ 325 (1113)
T KOG0644|consen 257 RVWRLPD-------GAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFE 325 (1113)
T ss_pred EEEecCC-------CchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecc
Confidence 9999998 67788899999999999999954 67889999999998211100000000 011223333333
Q ss_pred eccccCCccEEEEeecC-------------------------------------CcEEEEEeeecccccccCCCCCCcce
Q 037555 207 GLDRQKNHGFLAVGMES-------------------------------------GVIELWSISVNRTNDVSTPAPSTANI 249 (298)
Q Consensus 207 ~~~~~~~~~~l~~g~~d-------------------------------------g~i~vwd~~~~~~~~~~~~~~~~~~~ 249 (298)
..+ .-+++|+.| -.+.+|++.++ ..
T Consensus 326 ~~~-----~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g-------------~l 387 (1113)
T KOG0644|consen 326 NNG-----DRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG-------------QL 387 (1113)
T ss_pred ccc-----cccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccc-------------hh
Confidence 333 233333333 34455555444 22
Q ss_pred eeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 250 IIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 250 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
.+ .+.+|...+..|.++|-++ ....+++.||...|||+
T Consensus 388 ~H---~l~ghsd~~yvLd~Hpfn~------ri~msag~dgst~iwdi 425 (1113)
T KOG0644|consen 388 LH---NLMGHSDEVYVLDVHPFNP------RIAMSAGYDGSTIIWDI 425 (1113)
T ss_pred hh---hhcccccceeeeeecCCCc------HhhhhccCCCceEeeec
Confidence 22 2557899999999999875 67789999999999997
No 179
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.79 E-value=9.2e-18 Score=140.44 Aligned_cols=212 Identities=18% Similarity=0.251 Sum_probs=154.9
Q ss_pred cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee--eec----cccccccEEEEEEcCCC--CEEEEEeCCC
Q 037555 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA--MGR----LQSHSLTVTQIRFSHDD--NLLLSVSRDR 125 (298)
Q Consensus 54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~--~~~----~~~~~~~v~~~~~~~~~--~~l~~~~~dg 125 (298)
.-..+|+|+.|+|....+++|| ..+|+|.+||+..+.. ... ...|..+++.+.|..+. .-+++++.||
T Consensus 240 ~~~s~v~~~~f~p~~p~ll~gG----~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG 315 (555)
T KOG1587|consen 240 ESPSEVTCLKFCPFDPNLLAGG----CYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDG 315 (555)
T ss_pred ecCCceeEEEeccCCcceEEee----ccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCC
Confidence 4567899999999665555444 4599999999987654 222 23589999999997744 4599999999
Q ss_pred eEEEEEeccCCCCcc----------------------------------------------------c----eeeeEEee
Q 037555 126 QFSVFAIQRTGTGEI----------------------------------------------------D----YQLIARQE 149 (298)
Q Consensus 126 ~i~iwd~~~~~~~~~----------------------------------------------------~----~~~~~~~~ 149 (298)
.|..|+++.-..... . .+......
T Consensus 316 ~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~ 395 (555)
T KOG1587|consen 316 SICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFI 395 (555)
T ss_pred cEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccccc
Confidence 999998865321100 0 01122344
Q ss_pred ccCCceEEEEEccCCCEEEEeeCCCeEEEEEcc-CCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEE
Q 037555 150 AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVE-NKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIEL 228 (298)
Q Consensus 150 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~v 228 (298)
.|.++|+.+.++|=+..++..+.|.++++|... ...++. .+..+...+++++|+|..+ .+++++..||.|.+
T Consensus 396 ~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~---~~~~~~~~v~~vaWSptrp----avF~~~d~~G~l~i 468 (555)
T KOG1587|consen 396 THIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLL---SLDSSPDYVTDVAWSPTRP----AVFATVDGDGNLDI 468 (555)
T ss_pred ccCcceEeeecCCCccceeeeeccceeEeccccCCCCcch---hhhhccceeeeeEEcCcCc----eEEEEEcCCCceeh
Confidence 578899999999966555444449999999987 444444 5555677799999999987 79999999999999
Q ss_pred EEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 229 WSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 229 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
||+..... .++... .-+....+.+.|++.+ ..|+.|...|.+++|++.
T Consensus 469 WDLl~~~~-----------~Pv~s~---~~~~~~l~~~~~s~~g-------~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 469 WDLLQDDE-----------EPVLSQ---KVCSPALTRVRWSPNG-------KLLAVGDANGTTHILKLS 516 (555)
T ss_pred hhhhcccc-----------CCcccc---cccccccceeecCCCC-------cEEEEecCCCcEEEEEcC
Confidence 99986532 222221 1235667778888888 899999999999999983
No 180
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.9e-16 Score=114.98 Aligned_cols=200 Identities=15% Similarity=0.234 Sum_probs=143.3
Q ss_pred ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee------eec--cccc-----cccEEEEEEcCC
Q 037555 48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA------MGR--LQSH-----SLTVTQIRFSHD 114 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~------~~~--~~~~-----~~~v~~~~~~~~ 114 (298)
.+...++|.++|+.++|. ..+|++++ ||.|+-|....... +-. ...| -..|+++-..|.
T Consensus 54 ~iv~eqahdgpiy~~~f~--d~~Lls~g------dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~ 125 (325)
T KOG0649|consen 54 KIVPEQAHDGPIYYLAFH--DDFLLSGG------DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPS 125 (325)
T ss_pred ceeeccccCCCeeeeeee--hhheeecc------CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccC
Confidence 355668999999999998 44666663 79999998653221 111 1112 236889999998
Q ss_pred CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC
Q 037555 115 DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP 194 (298)
Q Consensus 115 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 194 (298)
.+-++.++.|+.++-||+++ ++..+.+++|.+.|.++.--.....+++|+.||++|+||+++.+....+...+
T Consensus 126 enSi~~AgGD~~~y~~dlE~-------G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk 198 (325)
T KOG0649|consen 126 ENSILFAGGDGVIYQVDLED-------GRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYK 198 (325)
T ss_pred CCcEEEecCCeEEEEEEecC-------CEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEecccc
Confidence 77777777899999999998 78889999999999999986666789999999999999999998877443322
Q ss_pred C-------CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEE
Q 037555 195 P-------FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMA 267 (298)
Q Consensus 195 ~-------~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 267 (298)
. ....|-+++.+. ..|++|+ ...+.+|.++.. .+...+. -..++..+.
T Consensus 199 ~~~~lRp~~g~wigala~~e-------dWlvCGg-Gp~lslwhLrss-------------e~t~vfp----ipa~v~~v~ 253 (325)
T KOG0649|consen 199 NPNLLRPDWGKWIGALAVNE-------DWLVCGG-GPKLSLWHLRSS-------------ESTCVFP----IPARVHLVD 253 (325)
T ss_pred ChhhcCcccCceeEEEeccC-------ceEEecC-CCceeEEeccCC-------------CceEEEe----cccceeEee
Confidence 1 112244444443 5777765 567999999987 3333332 345566777
Q ss_pred eecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 268 WKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 268 ~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
|.. ..+++++..+.+.-|.+
T Consensus 254 F~~---------d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 254 FVD---------DCVLIGGEGNHVQSYTL 273 (325)
T ss_pred eec---------ceEEEeccccceeeeee
Confidence 765 36677776667777765
No 181
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.79 E-value=3.4e-16 Score=120.00 Aligned_cols=159 Identities=14% Similarity=0.254 Sum_probs=128.6
Q ss_pred CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc---ccccEEEEEEcCCCCEEEEE--eCCCeEEEE
Q 037555 56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS---HSLTVTQIRFSHDDNLLLSV--SRDRQFSVF 130 (298)
Q Consensus 56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~--~~dg~i~iw 130 (298)
..+|.++.++. ++|+++- ...|+|||+++.+.+.++.. +...+.++.+++.+.+++-- ...|.|.+|
T Consensus 87 pt~IL~VrmNr--~RLvV~L------ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~ 158 (391)
T KOG2110|consen 87 PTSILAVRMNR--KRLVVCL------EESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLF 158 (391)
T ss_pred CCceEEEEEcc--ceEEEEE------cccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEE
Confidence 35677888764 3555552 34599999999999988753 45556666666666777753 347999999
Q ss_pred EeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCe-EEEEEccCCcceeeeeecCCCCCceEEEEEeecc
Q 037555 131 AIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKT-VKIWAVENKSSVKQILALPPFNSSVTALSWVGLD 209 (298)
Q Consensus 131 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (298)
|..+ ...+..+..|++++-+++|+++|.+||+++..|+ ||++.+.+++.+.+++.-. ....|.+++|+|++
T Consensus 159 d~~n-------l~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~-~~~~IySL~Fs~ds 230 (391)
T KOG2110|consen 159 DTIN-------LQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT-YPVSIYSLSFSPDS 230 (391)
T ss_pred Eccc-------ceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCc-eeeEEEEEEECCCC
Confidence 9988 7778888999999999999999999999999987 7999999999888665543 35679999999999
Q ss_pred ccCCccEEEEeecCCcEEEEEeeecc
Q 037555 210 RQKNHGFLAVGMESGVIELWSISVNR 235 (298)
Q Consensus 210 ~~~~~~~l~~g~~dg~i~vwd~~~~~ 235 (298)
.+|++.+..++|++|.+....
T Consensus 231 -----~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 231 -----QFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred -----CeEEEecCCCeEEEEEecccc
Confidence 799999999999999997654
No 182
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.78 E-value=1.3e-17 Score=133.72 Aligned_cols=186 Identities=15% Similarity=0.218 Sum_probs=143.1
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEE
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFS 128 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 128 (298)
-+.+..|.+.|.|-.|+|+|.-|+++ ++||.|++|.- +|....++.....+|.|++|.|+.+.++-+-. +.+.
T Consensus 97 E~sv~AH~~A~~~gRW~~dGtgLlt~-----GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g-~h~~ 169 (737)
T KOG1524|consen 97 ERSISAHAAAISSGRWSPDGAGLLTA-----GEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQG-GHIS 169 (737)
T ss_pred hhhhhhhhhhhhhcccCCCCceeeee-----cCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecC-CeEE
Confidence 34556899999999999999999999 57999999984 46666666667889999999998776555442 4455
Q ss_pred EEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeec
Q 037555 129 VFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGL 208 (298)
Q Consensus 129 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 208 (298)
|=.+.. ...+...+.|++-|.++.|++..+.+++|+.|-+.++||-.. ..+. +...|..+|++++|.|+
T Consensus 170 IKpL~~-------n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~Lf---~S~~~ey~ITSva~npd 238 (737)
T KOG1524|consen 170 IKPLAA-------NSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANLF---TSAAEEYAITSVAFNPE 238 (737)
T ss_pred Eeeccc-------ccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-cccc---cCChhccceeeeeeccc
Confidence 544443 233556789999999999999999999999999999999764 4444 66679999999999998
Q ss_pred cccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCC
Q 037555 209 DRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD 288 (298)
Q Consensus 209 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d 288 (298)
. .++.++. ..++ +. ....+.|..++|++|| ..++.|...
T Consensus 239 ~------~~~v~S~-nt~R---~~------------------------~p~~GSifnlsWS~DG-------TQ~a~gt~~ 277 (737)
T KOG1524|consen 239 K------DYLLWSY-NTAR---FS------------------------SPRVGSIFNLSWSADG-------TQATCGTST 277 (737)
T ss_pred c------ceeeeee-eeee---ec------------------------CCCccceEEEEEcCCC-------ceeeccccC
Confidence 4 4454442 2222 11 1256789999999999 788888877
Q ss_pred CcEEE
Q 037555 289 NTVRV 293 (298)
Q Consensus 289 ~~i~i 293 (298)
|.+.+
T Consensus 278 G~v~~ 282 (737)
T KOG1524|consen 278 GQLIV 282 (737)
T ss_pred ceEEE
Confidence 76643
No 183
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.8e-17 Score=120.22 Aligned_cols=202 Identities=13% Similarity=0.164 Sum_probs=144.8
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCc----------eeeeccccccccEEEEEEcCCCCEEEEEeCCCe
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSW----------KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQ 126 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 126 (298)
..|.+-+++|.+++|++|. .+|.|.+..+.+. ..+..+++|.++|+.++|. ..+|++|+ ||.
T Consensus 11 ~tvf~qa~sp~~~~l~agn-----~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~ 82 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGN-----LFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGL 82 (325)
T ss_pred HHHHHHhhCCcceEEEEec-----CCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-Cce
Confidence 4567778999999999994 5899999988542 2334468899999999998 44677776 599
Q ss_pred EEEEEeccCCCCcc---cee---eeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCce
Q 037555 127 FSVFAIQRTGTGEI---DYQ---LIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSV 200 (298)
Q Consensus 127 i~iwd~~~~~~~~~---~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v 200 (298)
|+-|..+......- .++ +.+.-...-..|+++...|..+.++.++.|+.++.||+++++... .+.+|...+
T Consensus 83 V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r---~~rGHtDYv 159 (325)
T KOG0649|consen 83 VYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR---EYRGHTDYV 159 (325)
T ss_pred EEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE---EEcCCccee
Confidence 99998765322100 000 111101122468899999988888888899999999999999887 788999999
Q ss_pred EEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCC------cc-cceEEEEEeecCCC
Q 037555 201 TALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFA------CH-VAAVNRMAWKTHEK 273 (298)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~v~~~~~~~~~~ 273 (298)
.++.--... ..+++|++||++++||.++. +++..+.++. .| ...|-+++-+.
T Consensus 160 H~vv~R~~~-----~qilsG~EDGtvRvWd~kt~-------------k~v~~ie~yk~~~~lRp~~g~wigala~~e--- 218 (325)
T KOG0649|consen 160 HSVVGRNAN-----GQILSGAEDGTVRVWDTKTQ-------------KHVSMIEPYKNPNLLRPDWGKWIGALAVNE--- 218 (325)
T ss_pred eeeeecccC-----cceeecCCCccEEEEecccc-------------ceeEEeccccChhhcCcccCceeEEEeccC---
Confidence 999885544 47999999999999999998 4444443221 22 23465555543
Q ss_pred CCCCcceEEEeeeCCCcEEEeEec
Q 037555 274 PKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 274 ~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.+|+.|+ ...+.+|.++
T Consensus 219 ------dWlvCGg-Gp~lslwhLr 235 (325)
T KOG0649|consen 219 ------DWLVCGG-GPKLSLWHLR 235 (325)
T ss_pred ------ceEEecC-CCceeEEecc
Confidence 5666665 5578899875
No 184
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.78 E-value=6.3e-17 Score=125.01 Aligned_cols=200 Identities=18% Similarity=0.245 Sum_probs=154.6
Q ss_pred cccccCCCCCceeeeccCCCccccccc------CCC------------CceEEeccCCCceEEEEEcCCC-CEEEeEecc
Q 037555 17 LDTLESVPDAVPAVFTEPPIEDQLAWH------TLW------------PESHKLYGHGNELFSLCCDHQG-KLVASSCKA 77 (298)
Q Consensus 17 ~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~------------~~~~~~~~h~~~v~~~~~s~~~-~~l~~~~~~ 77 (298)
.-.+.||..+|..+.+.|-....++++ .+| ..+..|.||...|--++|+|.- +.|++++
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag-- 151 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG-- 151 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc--
Confidence 455689999999999997777777775 244 2478899999999999999964 5667773
Q ss_pred CCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCc-eE
Q 037555 78 QSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRI-IW 156 (298)
Q Consensus 78 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-v~ 156 (298)
.|.+|.+|++.+++.+.++. |...|.++.|+.||.+|++.+.|..|+|||.+. ...+..-.+|.+. -.
T Consensus 152 ---~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~-------~~~v~e~~~heG~k~~ 220 (472)
T KOG0303|consen 152 ---SDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRR-------GTVVSEGVAHEGAKPA 220 (472)
T ss_pred ---CCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCC-------CcEeeecccccCCCcc
Confidence 49999999999999988888 999999999999999999999999999999998 5566666677652 23
Q ss_pred EEEEccCCCEEEEee---CCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555 157 SCSWNPFGHEFATGS---RDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 157 ~~~~~~~~~~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 233 (298)
.+.|-.++..+-+|. .+..+-+||..+.+...-+..+. ..+.|.---|.++.. -+.++|-.|+.|+.|.+..
T Consensus 221 Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~----ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 221 RAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTS----IVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred eeEEeccCceeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCC----EEEEEecCCcceEEEEecC
Confidence 455666777555554 46789999988776655444554 345555555666652 4455666899999999876
Q ss_pred c
Q 037555 234 N 234 (298)
Q Consensus 234 ~ 234 (298)
.
T Consensus 296 d 296 (472)
T KOG0303|consen 296 E 296 (472)
T ss_pred C
Confidence 5
No 185
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=1e-15 Score=117.43 Aligned_cols=195 Identities=14% Similarity=0.221 Sum_probs=150.1
Q ss_pred ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCC
Q 037555 58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGT 137 (298)
Q Consensus 58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 137 (298)
.|-.+-|+. .++|..+. .+.+.++++++.....+..+. ....|.++.++. +.|+++-.+ .|.|||++.
T Consensus 48 ~IvEmLFSS--SLvaiV~~---~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~--- 115 (391)
T KOG2110|consen 48 SIVEMLFSS--SLVAIVSI---KQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKD--- 115 (391)
T ss_pred EEEEeeccc--ceeEEEec---CCCceEEEEEcccCceEEEEe-cCCceEEEEEcc--ceEEEEEcc-cEEEEeccc---
Confidence 455666654 47777765 345789999998877776665 667899999964 466666654 499999998
Q ss_pred CccceeeeEEeec---cCCceEEEEEccCCCEEEEee--CCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccC
Q 037555 138 GEIDYQLIARQEA---HKRIIWSCSWNPFGHEFATGS--RDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQK 212 (298)
Q Consensus 138 ~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 212 (298)
.+++.++.. +...+.++.+++.+.+++.-+ ..|.|.+||..+.+... .+..|++++.+++|+++|
T Consensus 116 ----MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~---~I~aH~~~lAalafs~~G--- 185 (391)
T KOG2110|consen 116 ----MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVN---TINAHKGPLAALAFSPDG--- 185 (391)
T ss_pred ----ceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeee---EEEecCCceeEEEECCCC---
Confidence 666665543 344566666666666887654 46899999999888777 667899999999999999
Q ss_pred CccEEEEeecCCc-EEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcE
Q 037555 213 NHGFLAVGMESGV-IELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTV 291 (298)
Q Consensus 213 ~~~~l~~g~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i 291 (298)
.+||++++.|+ |||+.+.++ +.+..|..- -....|.+++|+|++ .+|++.|..++|
T Consensus 186 --~llATASeKGTVIRVf~v~~G-------------~kl~eFRRG-~~~~~IySL~Fs~ds-------~~L~~sS~TeTV 242 (391)
T KOG2110|consen 186 --TLLATASEKGTVIRVFSVPEG-------------QKLYEFRRG-TYPVSIYSLSFSPDS-------QFLAASSNTETV 242 (391)
T ss_pred --CEEEEeccCceEEEEEEcCCc-------------cEeeeeeCC-ceeeEEEEEEECCCC-------CeEEEecCCCeE
Confidence 89999999885 799999887 666666421 125679999999999 899999999999
Q ss_pred EEeEec
Q 037555 292 RVFQVN 297 (298)
Q Consensus 292 ~iw~~~ 297 (298)
++|.|.
T Consensus 243 HiFKL~ 248 (391)
T KOG2110|consen 243 HIFKLE 248 (391)
T ss_pred EEEEec
Confidence 999875
No 186
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.76 E-value=5e-17 Score=130.22 Aligned_cols=202 Identities=15% Similarity=0.270 Sum_probs=144.1
Q ss_pred CCCEEEeEeccCCCCceEEEEEEcCCceeeeccc----cccccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccCCCCcc-
Q 037555 67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ----SHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTGTGEI- 140 (298)
Q Consensus 67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~----~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~- 140 (298)
.+--|.+| -.-|.|.+.|....+..+.+. .-...|+++.|-| +...++++-.+|.+.+||.........
T Consensus 184 ~g~dllIG-----f~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p 258 (636)
T KOG2394|consen 184 KGLDLLIG-----FTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAP 258 (636)
T ss_pred CCcceEEe-----eccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCC
Confidence 44456666 236788888876532222121 1347899999999 455778888899999998643211000
Q ss_pred --------------------ceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCce
Q 037555 141 --------------------DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSV 200 (298)
Q Consensus 141 --------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v 200 (298)
...++..+..-.+.|..++|+||+++||+.+.||.+||+|..+.+.+. ..+..-+..
T Consensus 259 ~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg---~mkSYFGGL 335 (636)
T KOG2394|consen 259 SYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG---VMKSYFGGL 335 (636)
T ss_pred cccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHH---HHHhhccce
Confidence 011222222334578899999999999999999999999999877766 333445678
Q ss_pred EEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCC-----
Q 037555 201 TALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPK----- 275 (298)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----- 275 (298)
.|++|+|++ ++|++|++|--|.||.+... +.+.. -.+|..+|+.++|.|--...
T Consensus 336 LCvcWSPDG-----KyIvtGGEDDLVtVwSf~er-------------RVVAR---GqGHkSWVs~VaFDpytt~~ee~~~ 394 (636)
T KOG2394|consen 336 LCVCWSPDG-----KYIVTGGEDDLVTVWSFEER-------------RVVAR---GQGHKSWVSVVAFDPYTTSTEEWNN 394 (636)
T ss_pred EEEEEcCCc-----cEEEecCCcceEEEEEeccc-------------eEEEe---ccccccceeeEeecccccccccccc
Confidence 999999999 89999999999999999876 44444 56899999999998421100
Q ss_pred -------------------------CC-----------cceEEEeeeCCCcEEEeEec
Q 037555 276 -------------------------NS-----------RTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 276 -------------------------~~-----------~~~~l~s~~~d~~i~iw~~~ 297 (298)
+. ....|.+.+.|-.+.+||+.
T Consensus 395 ~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlt 452 (636)
T KOG2394|consen 395 FSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLT 452 (636)
T ss_pred cccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecc
Confidence 00 12578899999999999985
No 187
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.76 E-value=1.5e-15 Score=127.40 Aligned_cols=209 Identities=26% Similarity=0.466 Sum_probs=161.5
Q ss_pred ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCC-EEEEEeCCCe
Q 037555 48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDN-LLLSVSRDRQ 126 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~ 126 (298)
....+..|...|.+++|+|++..+++++. .++.+++|+...+..+..+.+|...|.+++|+|++. .+++++.|+.
T Consensus 147 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~ 222 (466)
T COG2319 147 LIRTLEGHSESVTSLAFSPDGKLLASGSS----LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT 222 (466)
T ss_pred EEEEEecCcccEEEEEECCCCCEEEecCC----CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCc
Confidence 45677899999999999999998888831 389999999998888888888999999999999988 5555599999
Q ss_pred EEEEEeccCCCCccceeeeE-EeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcc-eeeeeecCCCCCceEEEE
Q 037555 127 FSVFAIQRTGTGEIDYQLIA-RQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSS-VKQILALPPFNSSVTALS 204 (298)
Q Consensus 127 i~iwd~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~~~~~~~v~~~~ 204 (298)
+++||... ..... .+..|.... ...|+|++..+++++.|+.+++|+++.... .. .+..|...+.++.
T Consensus 223 i~~wd~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~ 291 (466)
T COG2319 223 IRLWDLST-------GKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLR---TLSGHSSSVLSVA 291 (466)
T ss_pred EEEEECCC-------CcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEE---EEecCCccEEEEE
Confidence 99997763 33444 567777765 448999998899999999999999997665 33 2245788999999
Q ss_pred EeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEe
Q 037555 205 WVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLAS 284 (298)
Q Consensus 205 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s 284 (298)
|.|.+ ..+++++.|+.+.+|+.... ....... ...|...+..+.|.+++ ..++.
T Consensus 292 ~~~~~-----~~~~~~~~d~~~~~~~~~~~-------------~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~ 345 (466)
T COG2319 292 FSPDG-----KLLASGSSDGTVRLWDLETG-------------KLLSSLT-LKGHEGPVSSLSFSPDG-------SLLVS 345 (466)
T ss_pred ECCCC-----CEEEEeeCCCcEEEEEcCCC-------------ceEEEee-ecccCCceEEEEECCCC-------CEEEE
Confidence 99966 56777888888999987765 2222221 23577789999993332 24444
Q ss_pred e-eCCCcEEEeEec
Q 037555 285 C-GADNTVRVFQVN 297 (298)
Q Consensus 285 ~-~~d~~i~iw~~~ 297 (298)
+ ..|+.+++|++.
T Consensus 346 ~~~~d~~~~~~~~~ 359 (466)
T COG2319 346 GGSDDGTIRLWDLR 359 (466)
T ss_pred eecCCCcEEeeecC
Confidence 4 688899999864
No 188
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.76 E-value=2.3e-16 Score=132.20 Aligned_cols=201 Identities=11% Similarity=0.101 Sum_probs=137.1
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee--eeccccccccEEEEEEcCCCCEEEEEe-CCC
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA--MGRLQSHSLTVTQIRFSHDDNLLLSVS-RDR 125 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg 125 (298)
.+.+..|...+....|+|+|+.|+.++.+ ..+..|++||+.+++. +..+.+| ...++|+|||+.|+.++ .+|
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~--~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g 270 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFE--NKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDG 270 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEec--CCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCC
Confidence 45667788899999999999999988653 1246899999987754 3334433 34689999999887764 688
Q ss_pred eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee-CCCeEEEEEccCCcceeeeeecCCCCCceEEEE
Q 037555 126 QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS-RDKTVKIWAVENKSSVKQILALPPFNSSVTALS 204 (298)
Q Consensus 126 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~ 204 (298)
.+.||.++... .....+..+...+....|+|+++.|+..+ .+|...+|++........ .+ .+.. ....
T Consensus 271 ~~~Iy~~d~~~------~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~--~l-~~~~--~~~~ 339 (429)
T PRK01742 271 VLNIYVMGANG------GTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS--LV-GGRG--YSAQ 339 (429)
T ss_pred cEEEEEEECCC------CCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE--Ee-cCCC--CCcc
Confidence 77777554321 12344455666788899999999877665 578888888754332221 12 2222 4578
Q ss_pred EeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEe
Q 037555 205 WVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLAS 284 (298)
Q Consensus 205 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s 284 (298)
|+|++ ..|+..+.++ +.+||+.++. .. .+.. .+ ...++.|+|++ .+|++
T Consensus 340 ~SpDG-----~~ia~~~~~~-i~~~Dl~~g~-------------~~-~lt~--~~--~~~~~~~sPdG-------~~i~~ 388 (429)
T PRK01742 340 ISADG-----KTLVMINGDN-VVKQDLTSGS-------------TE-VLSS--TF--LDESPSISPNG-------IMIIY 388 (429)
T ss_pred CCCCC-----CEEEEEcCCC-EEEEECCCCC-------------eE-EecC--CC--CCCCceECCCC-------CEEEE
Confidence 99998 6777776654 6668987652 11 1110 11 22457899999 89999
Q ss_pred eeCCCcEEEeEe
Q 037555 285 CGADNTVRVFQV 296 (298)
Q Consensus 285 ~~~d~~i~iw~~ 296 (298)
++.++.+.+|.+
T Consensus 389 ~s~~g~~~~l~~ 400 (429)
T PRK01742 389 SSTQGLGKVLQL 400 (429)
T ss_pred EEcCCCceEEEE
Confidence 999998888875
No 189
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.75 E-value=3.6e-17 Score=126.63 Aligned_cols=167 Identities=19% Similarity=0.354 Sum_probs=137.2
Q ss_pred cccEEEEEEcCCCC-EEEEEeCCCeEEEEEeccCCCCc--cceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEE
Q 037555 103 SLTVTQIRFSHDDN-LLLSVSRDRQFSVFAIQRTGTGE--IDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIW 179 (298)
Q Consensus 103 ~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 179 (298)
..+|..+.|.++.. .+++|+.|..|++|.+....... ........+..|...|+.+.|+|+|+.|++|+++|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 45789999988665 99999999999999998766544 2356677888999999999999999999999999999999
Q ss_pred Ecc--------C-----CcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCC
Q 037555 180 AVE--------N-----KSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPST 246 (298)
Q Consensus 180 d~~--------~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 246 (298)
-.. + .+.......+.+|...|..++|+|++ .++++++.|..+++||+..+
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-----~~l~s~s~dns~~l~Dv~~G------------ 155 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-----NFLVSGSVDNSVRLWDVHAG------------ 155 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-----ceeeeeeccceEEEEEeccc------------
Confidence 776 2 11122223455688999999999999 89999999999999999988
Q ss_pred cceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 247 ANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 247 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+.... +..|..-|..++|.|-+ +++++-+.|...+.+.+.
T Consensus 156 -~l~~~---~~dh~~yvqgvawDpl~-------qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 156 -QLLAI---LDDHEHYVQGVAWDPLN-------QYVASKSSDRHPEGFSAK 195 (434)
T ss_pred -eeEee---ccccccccceeecchhh-------hhhhhhccCcccceeeee
Confidence 55555 44699999999999998 899999988876666543
No 190
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.75 E-value=2.6e-15 Score=125.99 Aligned_cols=239 Identities=24% Similarity=0.397 Sum_probs=176.0
Q ss_pred cccCCCCCceeeeccCCCccccccc-----CCCC------ceEEeccCCC-ceEEEEE-cCCCCEEEeEeccCCCCceEE
Q 037555 19 TLESVPDAVPAVFTEPPIEDQLAWH-----TLWP------ESHKLYGHGN-ELFSLCC-DHQGKLVASSCKAQSTAAAEI 85 (298)
Q Consensus 19 ~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~------~~~~~~~h~~-~v~~~~~-s~~~~~l~~~~~~~~~~d~~i 85 (298)
.+..|...+....+.+......... .+|+ ....+.++.. .+..+.+ ++++..++.... ..++.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASS---SLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccC---CCCccE
Confidence 4567777777777774433222221 2232 3555555443 7777777 788873333322 348899
Q ss_pred EEEEcCC-ceeeeccccccccEEEEEEcCCCCEEEEEeC-CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC
Q 037555 86 WLWEVGS-WKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR-DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF 163 (298)
Q Consensus 86 ~vw~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 163 (298)
.+|+... ......+..|...|..+.|+|++..+++++. |+.+++|+... ...+..+..|...|.+++|+|+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~ 209 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT-------GKPLSTLAGHTDPVSSLAFSPD 209 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCC-------CceEEeeccCCCceEEEEEcCC
Confidence 9999987 6777888889999999999999998888886 99999999986 4456677779999999999998
Q ss_pred CC-EEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCC
Q 037555 164 GH-EFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTP 242 (298)
Q Consensus 164 ~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 242 (298)
+. .+++++.|+.|++||...+..... .+..|.... -..|+|++ .++++++.|+.+++|+.+....
T Consensus 210 ~~~~~~~~~~d~~i~~wd~~~~~~~~~--~~~~~~~~~-~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~------ 275 (466)
T COG2319 210 GGLLIASGSSDGTIRLWDLSTGKLLRS--TLSGHSDSV-VSSFSPDG-----SLLASGSSDGTIRLWDLRSSSS------ 275 (466)
T ss_pred cceEEEEecCCCcEEEEECCCCcEEee--ecCCCCcce-eEeECCCC-----CEEEEecCCCcEEEeeecCCCc------
Confidence 87 555558999999998885544431 244555554 33788887 6888999999999999986521
Q ss_pred CCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 243 APSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
....+ ..|...|.++.|+|++ ..+++++.|+.+++|++.
T Consensus 276 ------~~~~~---~~~~~~v~~~~~~~~~-------~~~~~~~~d~~~~~~~~~ 314 (466)
T COG2319 276 ------LLRTL---SGHSSSVLSVAFSPDG-------KLLASGSSDGTVRLWDLE 314 (466)
T ss_pred ------EEEEE---ecCCccEEEEEECCCC-------CEEEEeeCCCcEEEEEcC
Confidence 12222 4578999999999977 677778889999999864
No 191
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=5.6e-17 Score=130.53 Aligned_cols=202 Identities=20% Similarity=0.295 Sum_probs=156.2
Q ss_pred cccCCCCCceeeeccCCCccccccc------CCCC-------------ceEEeccCCCceEEEEEcCCCCEEEeEeccCC
Q 037555 19 TLESVPDAVPAVFTEPPIEDQLAWH------TLWP-------------ESHKLYGHGNELFSLCCDHQGKLVASSCKAQS 79 (298)
Q Consensus 19 ~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-------------~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~ 79 (298)
++..|.+.+..+.|. |.+..++++ .+|. ++.+|++|.++|.|+++.+++..+.+|+
T Consensus 289 tl~s~~d~ir~l~~~-~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg---- 363 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFH-PSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG---- 363 (577)
T ss_pred eeecchhhhhhhhcC-CCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec----
Confidence 666777788887777 344444444 3553 4788999999999999999999999995
Q ss_pred CCceEEEEEEcCC-------c---eeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc---------
Q 037555 80 TAAAEIWLWEVGS-------W---KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI--------- 140 (298)
Q Consensus 80 ~~d~~i~vw~~~~-------~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------- 140 (298)
-||+|+.|++.. . .....+.||.+.|+.+++++....|++++.||+++.|+.........
T Consensus 364 -~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~P 442 (577)
T KOG0642|consen 364 -IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYP 442 (577)
T ss_pred -cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCc
Confidence 599999996542 1 22355789999999999999988999999999999999765443000
Q ss_pred -------------------------ceee---eEEee-------ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCc
Q 037555 141 -------------------------DYQL---IARQE-------AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKS 185 (298)
Q Consensus 141 -------------------------~~~~---~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 185 (298)
.... +..+. .....+..+.++|...+.+++..|+.|+++|..+++
T Consensus 443 lsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~ 522 (577)
T KOG0642|consen 443 LSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK 522 (577)
T ss_pred ceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc
Confidence 0000 00000 011346677888888999999999999999999999
Q ss_pred ceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555 186 SVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 186 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
.+. ....|...++++++.|.+ .+|++++.|+.+++|.+...
T Consensus 523 ~l~---s~~a~~~svtslai~~ng-----~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 523 ILH---SMVAHKDSVTSLAIDPNG-----PYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred cch---heeeccceecceeecCCC-----ceEEeecCCceeehhhccch
Confidence 887 555788999999999999 69999999999999998654
No 192
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.74 E-value=1.3e-16 Score=120.10 Aligned_cols=170 Identities=16% Similarity=0.306 Sum_probs=139.1
Q ss_pred cccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEE
Q 037555 99 LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKI 178 (298)
Q Consensus 99 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 178 (298)
+.-...+|+|.+|++|+..++.+.....|.||....... ++...++..|...|+.++|+|..+.|++|+.|..-++
T Consensus 6 ~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~----w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayV 81 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL----WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYV 81 (361)
T ss_pred eeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCC----ceeceehhhhCcceeEEeecCCCCceeEccCCCCccc
Confidence 333467899999999999999999999999999876543 6678899999999999999999999999999999999
Q ss_pred EEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCc
Q 037555 179 WAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFAC 258 (298)
Q Consensus 179 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (298)
|....+........+..++...+++.|+|.+ +.+++|+.-..|.||-++..+. |-..+.+ -..
T Consensus 82 w~~~~~~~WkptlvLlRiNrAAt~V~WsP~e-----nkFAVgSgar~isVcy~E~ENd----------WWVsKhi--kkP 144 (361)
T KOG1523|consen 82 WTQPSGGTWKPTLVLLRINRAATCVKWSPKE-----NKFAVGSGARLISVCYYEQEND----------WWVSKHI--KKP 144 (361)
T ss_pred cccCCCCeeccceeEEEeccceeeEeecCcC-----ceEEeccCccEEEEEEEecccc----------eehhhhh--CCc
Confidence 9995444433333555688999999999998 8999999999999998876521 1111111 124
Q ss_pred ccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 259 HVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 259 ~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
+...|++++|+|++ -+|++|+.|+..|++..
T Consensus 145 irStv~sldWhpnn-------VLlaaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 145 IRSTVTSLDWHPNN-------VLLAAGSTDGKCRVFSA 175 (361)
T ss_pred cccceeeeeccCCc-------ceecccccCcceeEEEE
Confidence 78899999999999 89999999999999864
No 193
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.73 E-value=5.5e-16 Score=129.90 Aligned_cols=188 Identities=16% Similarity=0.206 Sum_probs=137.0
Q ss_pred ceEEEEEEcCCc-eeeeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEE
Q 037555 82 AAEIWLWEVGSW-KAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS 159 (298)
Q Consensus 82 d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 159 (298)
++.+.+|++... .+...+. -...|.+++|+| +.++++.|..+|.|.+||++....... .........|..+++.+.
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~-s~ls~~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP-SGLSALEVSHSEPVTAVV 298 (555)
T ss_pred CceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC-cccccccccCCcCeEEEE
Confidence 357999999865 3333344 577899999999 677899999999999999987654221 222334456889999999
Q ss_pred EccCC--CEEEEeeCCCeEEEEEccCCccee-------------------------------------------------
Q 037555 160 WNPFG--HEFATGSRDKTVKIWAVENKSSVK------------------------------------------------- 188 (298)
Q Consensus 160 ~~~~~--~~l~~~~~dg~i~~wd~~~~~~~~------------------------------------------------- 188 (298)
|..+. .-|++++.||.|..|+++......
T Consensus 299 W~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 299 WLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred EeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 98744 459999999999999887521100
Q ss_pred -----e------eeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCC
Q 037555 189 -----Q------ILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFA 257 (298)
Q Consensus 189 -----~------~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (298)
. ...+..|.++|+++.++|.+. .++++++ |..++||...... .++.. +.
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~----k~fls~g-DW~vriWs~~~~~------------~Pl~~---~~ 438 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP----KNFLSVG-DWTVRIWSEDVIA------------SPLLS---LD 438 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCcc----ceeeeec-cceeEeccccCCC------------Ccchh---hh
Confidence 0 112234567788888888884 5555555 8999999876221 23332 34
Q ss_pred cccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 258 CHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 258 ~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.+...|++++|||..+ ..++++..||.|.+|||.
T Consensus 439 ~~~~~v~~vaWSptrp------avF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 439 SSPDYVTDVAWSPTRP------AVFATVDGDGNLDIWDLL 472 (555)
T ss_pred hccceeeeeEEcCcCc------eEEEEEcCCCceehhhhh
Confidence 5677799999999885 789999999999999985
No 194
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.72 E-value=1.4e-16 Score=127.74 Aligned_cols=165 Identities=16% Similarity=0.255 Sum_probs=127.0
Q ss_pred CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC--------------c--------------eeeeccccccccEE
Q 037555 56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS--------------W--------------KAMGRLQSHSLTVT 107 (298)
Q Consensus 56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~--------------~--------------~~~~~~~~~~~~v~ 107 (298)
+..|+|+.|-|.+..++..+ ..+|.+++||.+- + .++..+.-....|.
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a----~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in 294 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVA----HASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSIN 294 (636)
T ss_pred ccceEEEEEEeCCCceEEEE----EecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEecccccc
Confidence 47899999998655444433 2488999997531 0 11111222345788
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcce
Q 037555 108 QIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSV 187 (298)
Q Consensus 108 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 187 (298)
.++|+|||++||+.+.||.++|||..+ ..++...+..-+...|++|+|||++|++|+.|--|.||.+...+.+
T Consensus 295 ~f~FS~DG~~LA~VSqDGfLRvF~fdt-------~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV 367 (636)
T KOG2394|consen 295 EFAFSPDGKYLATVSQDGFLRIFDFDT-------QELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV 367 (636)
T ss_pred ceeEcCCCceEEEEecCceEEEeeccH-------HHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEE
Confidence 999999999999999999999999987 4555555556678999999999999999999999999999998887
Q ss_pred eeeeecCCCCCceEEEEEeeccc------------------------------c-------------CCccEEEEeecCC
Q 037555 188 KQILALPPFNSSVTALSWVGLDR------------------------------Q-------------KNHGFLAVGMESG 224 (298)
Q Consensus 188 ~~~~~~~~~~~~v~~~~~~~~~~------------------------------~-------------~~~~~l~~g~~dg 224 (298)
. .-++|++.|..++|.|.-. + .-...+.+.+.|.
T Consensus 368 A---RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDT 444 (636)
T KOG2394|consen 368 A---RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDT 444 (636)
T ss_pred E---eccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccc
Confidence 7 7789999999999995211 0 0124677788999
Q ss_pred cEEEEEeeec
Q 037555 225 VIELWSISVN 234 (298)
Q Consensus 225 ~i~vwd~~~~ 234 (298)
.+.+||+...
T Consensus 445 qlcLWDlteD 454 (636)
T KOG2394|consen 445 QLCLWDLTED 454 (636)
T ss_pred eEEEEecchh
Confidence 9999999754
No 195
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.72 E-value=1e-17 Score=140.53 Aligned_cols=239 Identities=15% Similarity=0.201 Sum_probs=169.0
Q ss_pred cccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEE
Q 037555 17 LDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEI 85 (298)
Q Consensus 17 ~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i 85 (298)
+..+-+|.++|+|+.|. ..+..+.++ ++|. +.....||.+.|+.++.+.+..++|+++ .|..|
T Consensus 183 ikrLlgH~naVyca~fD-rtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS-----~D~vI 256 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFD-RTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAAS-----NDKVI 256 (1113)
T ss_pred HHHHHhhhhheeeeeec-cccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcc-----cCceE
Confidence 44567999999999999 666667666 5674 4667789999999999999999999995 49999
Q ss_pred EEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc-------ceeeeEEe----------
Q 037555 86 WLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI-------DYQLIARQ---------- 148 (298)
Q Consensus 86 ~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~~~~~~---------- 148 (298)
++|.+..+.++..+.+|++.|++++|+|-. +.+.||++++||.+-...... ....+..+
T Consensus 257 rvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~ 332 (1113)
T KOG0644|consen 257 RVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFL 332 (1113)
T ss_pred EEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccc
Confidence 999999999999999999999999999954 778899999999882110000 00000000
Q ss_pred ------eccCCceEEEEEccCCCEE-----------EEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecccc
Q 037555 149 ------EAHKRIIWSCSWNPFGHEF-----------ATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQ 211 (298)
Q Consensus 149 ------~~~~~~v~~~~~~~~~~~l-----------~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (298)
......+..++|....-.+ +++-.+-.+++|++-++.... .+.+|...+..+.++|.++
T Consensus 333 Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H---~l~ghsd~~yvLd~Hpfn~- 408 (1113)
T KOG0644|consen 333 TGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLH---NLMGHSDEVYVLDVHPFNP- 408 (1113)
T ss_pred cccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhh---hhcccccceeeeeecCCCc-
Confidence 0001111222232222222 333345567888888887666 5667888999999999885
Q ss_pred CCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcE
Q 037555 212 KNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTV 291 (298)
Q Consensus 212 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i 291 (298)
.+..+++.||...|||+-.+ .+++... .+ ...+..-+|+++| ..++....-|.+
T Consensus 409 ---ri~msag~dgst~iwdi~eg-------------~pik~y~--~g-h~kl~d~kFSqdg-------ts~~lsd~hgql 462 (1113)
T KOG0644|consen 409 ---RIAMSAGYDGSTIIWDIWEG-------------IPIKHYF--IG-HGKLVDGKFSQDG-------TSIALSDDHGQL 462 (1113)
T ss_pred ---HhhhhccCCCceEeeecccC-------------Ccceeee--cc-cceeeccccCCCC-------ceEecCCCCCce
Confidence 67778899999999999877 4444432 34 4566678899998 566655555666
Q ss_pred EEeE
Q 037555 292 RVFQ 295 (298)
Q Consensus 292 ~iw~ 295 (298)
.|..
T Consensus 463 ~i~g 466 (1113)
T KOG0644|consen 463 YILG 466 (1113)
T ss_pred EEec
Confidence 6543
No 196
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=4.3e-17 Score=131.06 Aligned_cols=178 Identities=17% Similarity=0.229 Sum_probs=137.1
Q ss_pred eeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeE-EeeccCCceEEEEEcc--CCCEEEEeeC
Q 037555 96 MGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIA-RQEAHKRIIWSCSWNP--FGHEFATGSR 172 (298)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~--~~~~l~~~~~ 172 (298)
.+.+.+|++.|.+++|+.+|.+|++|+.|-.+.|||.-. .+++. .-.+|...|.++.|-| ..+.+++|..
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~-------~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAg 115 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFE-------YKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAG 115 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchh-------cceeeeeecccccceeEEeeeccCCCeEEEeccC
Confidence 356889999999999999999999999999999999875 33333 4467999999999999 4578899999
Q ss_pred CCeEEEEEccCCcc-------eeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCC
Q 037555 173 DKTVKIWAVENKSS-------VKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPS 245 (298)
Q Consensus 173 dg~i~~wd~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~ 245 (298)
|..|+++|+...+. ......+..|...|..++-.|.++ ..+.++++||.|+-||++.........
T Consensus 116 Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P----htfwsasEDGtirQyDiREph~c~p~~---- 187 (758)
T KOG1310|consen 116 DKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP----HTFWSASEDGTIRQYDIREPHVCNPDE---- 187 (758)
T ss_pred cceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCC----ceEEEecCCcceeeecccCCccCCccc----
Confidence 99999999985221 112224556888899999999987 899999999999999998743221100
Q ss_pred CcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 246 TANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 246 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
.+...+..+...--...++..+|..+ .+|+.|+.|-..++||.
T Consensus 188 --~~~~~l~ny~~~lielk~ltisp~rp------~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 188 --DCPSILVNYNPQLIELKCLTISPSRP------YYLAVGGSDPFARLYDR 230 (758)
T ss_pred --cccHHHHHhchhhheeeeeeecCCCC------ceEEecCCCchhhhhhh
Confidence 12222222222335677899999875 89999999999999984
No 197
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=2.9e-15 Score=126.62 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=96.6
Q ss_pred cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC--ce--eeeccccccccEEEEEEcCCCCEEEEEeCCCeEEE
Q 037555 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS--WK--AMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSV 129 (298)
Q Consensus 54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~--~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 129 (298)
.|...++|.++||+++++|++ ..||+|.+|.--. .. ....+.-|...|.++.|+++|.+|++|+..|.+.+
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~-----d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~ 277 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAG-----DSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVL 277 (792)
T ss_pred hhcccceeEEeccccceEEEe-----ccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEE
Confidence 477779999999999999999 6699999997533 21 22346678899999999999999999999999999
Q ss_pred EEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccC
Q 037555 130 FAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVEN 183 (298)
Q Consensus 130 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 183 (298)
|.+.++. .+-+..-.++|..+.++||+.+.+....|+.|.+....+
T Consensus 278 Wq~~T~~--------kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 278 WQLETGK--------KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD 323 (792)
T ss_pred EeecCCC--------cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc
Confidence 9999853 233444568899999999999999998999988877644
No 198
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=9.5e-15 Score=112.03 Aligned_cols=213 Identities=15% Similarity=0.261 Sum_probs=141.9
Q ss_pred ccccceeeeecCcccccccCC-CCCceeeeccCCCccccccc-----CCCC-------------------ceEEeccCCC
Q 037555 3 AATRETVERHGNDGLDTLESV-PDAVPAVFTEPPIEDQLAWH-----TLWP-------------------ESHKLYGHGN 57 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~-----~~~~-------------------~~~~~~~h~~ 57 (298)
+...+.++... ++...++.. ...|.++++.|-....++.+ -+|. .+..-.|| .
T Consensus 119 ddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~ 196 (445)
T KOG2139|consen 119 DDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-N 196 (445)
T ss_pred CcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCC-c
Confidence 34566676666 555555543 34688999997655544443 1332 12233455 6
Q ss_pred ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCC
Q 037555 58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGT 137 (298)
Q Consensus 58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 137 (298)
+|+++.|++||..+++++. .+..|.|||..++..+-...-..+.++-+.|+||+.+|+++.-|+..++|+....
T Consensus 197 pVtsmqwn~dgt~l~tAS~----gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~-- 270 (445)
T KOG2139|consen 197 PVTSMQWNEDGTILVTASF----GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQS-- 270 (445)
T ss_pred eeeEEEEcCCCCEEeeccc----CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhccc--
Confidence 8999999999999999985 5889999999988766544445677889999999999999999999999965542
Q ss_pred CccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcc------------eeeeeecC---------CC
Q 037555 138 GEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSS------------VKQILALP---------PF 196 (298)
Q Consensus 138 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~------------~~~~~~~~---------~~ 196 (298)
+...+... ..+.|...+|+|+|++|+.... |.-++|.+.-... ...+..++ -.
T Consensus 271 ----wt~erw~l-gsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~ 344 (445)
T KOG2139|consen 271 ----WTKERWIL-GSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLC 344 (445)
T ss_pred ----ceecceec-cCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccc
Confidence 22222222 3458999999999987765543 3334444432110 00000111 11
Q ss_pred CCceEEEEEeeccccCCccEEEEeecCC--------cEEEEEeeec
Q 037555 197 NSSVTALSWVGLDRQKNHGFLAVGMESG--------VIELWSISVN 234 (298)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~l~~g~~dg--------~i~vwd~~~~ 234 (298)
.+++.+++|.|.| ++|++....+ .|.+||.+..
T Consensus 345 cgeaq~lawDpsG-----eyLav~fKg~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 345 CGEAQCLAWDPSG-----EYLAVIFKGQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred cCccceeeECCCC-----CEEEEEEcCCchhhhhhhhhhhhccccc
Confidence 4568899999999 7898876543 4667776653
No 199
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.71 E-value=2.4e-16 Score=115.68 Aligned_cols=163 Identities=13% Similarity=0.239 Sum_probs=126.2
Q ss_pred cCCCceEEEEEcC-CC-CEEEeEeccCCCCceEEEEEEcCCce----------eeeccccccccEEEEEEcCCCCEEEEE
Q 037555 54 GHGNELFSLCCDH-QG-KLVASSCKAQSTAAAEIWLWEVGSWK----------AMGRLQSHSLTVTQIRFSHDDNLLLSV 121 (298)
Q Consensus 54 ~h~~~v~~~~~s~-~~-~~l~~~~~~~~~~d~~i~vw~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~l~~~ 121 (298)
+..+.++|..+.. ++ ..|+.++ .++|.+.+||+.++. .......|..+|.++.+.+.-+.=+++
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaG----yEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisg 223 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAG----YESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISG 223 (323)
T ss_pred cccCceeeeeccccccceEEEEEe----ccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCC
Confidence 3456788888643 23 3444444 579999999999873 333345699999999998865566788
Q ss_pred eCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceE
Q 037555 122 SRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVT 201 (298)
Q Consensus 122 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~ 201 (298)
+.+-.+..|.++..... ........-.+-.|..+..-||++.+|+++.|++||+|..++..++. .+.-|...|.
T Consensus 224 ga~dkl~~~Sl~~s~gs---lq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLA---VLkyHsagvn 297 (323)
T KOG0322|consen 224 GADDKLVMYSLNHSTGS---LQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLA---VLKYHSAGVN 297 (323)
T ss_pred CccccceeeeeccccCc---ccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchh---hhhhhhccee
Confidence 88888999998764322 11122222234567889999999999999999999999999998887 7777899999
Q ss_pred EEEEeeccccCCccEEEEeecCCcEEEEEe
Q 037555 202 ALSWVGLDRQKNHGFLAVGMESGVIELWSI 231 (298)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~ 231 (298)
+++|+|+. +++++++.|++|.+|++
T Consensus 298 ~vAfspd~-----~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 298 AVAFSPDC-----ELMAAASKDARISLWKL 322 (323)
T ss_pred EEEeCCCC-----chhhhccCCceEEeeec
Confidence 99999997 79999999999999986
No 200
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.70 E-value=2.9e-17 Score=129.37 Aligned_cols=195 Identities=14% Similarity=0.225 Sum_probs=162.6
Q ss_pred CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccC
Q 037555 56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRT 135 (298)
Q Consensus 56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 135 (298)
......+.++.+|+.|+.|+. .|.|-.+|..+++....+. -...|.++.|..+.+++|++- ...+.|||-.
T Consensus 129 eFGPY~~~ytrnGrhlllgGr-----KGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~-- 199 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGR-----KGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNN-- 199 (545)
T ss_pred ccCCeeeeecCCccEEEecCC-----ccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhhh-hceEEEecCC--
Confidence 345678999999999999954 8999999999988877776 456799999998887776654 6789999965
Q ss_pred CCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCcc
Q 037555 136 GTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHG 215 (298)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (298)
+..+..++.| ..|..+.|-|-.-+|++++..|.++--|+.+++.+. .+....+.+..|.-+|.+ .
T Consensus 200 ------GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa---~~~t~~G~~~vm~qNP~N-----a 264 (545)
T KOG1272|consen 200 ------GTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVA---SIRTGAGRTDVMKQNPYN-----A 264 (545)
T ss_pred ------CcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhH---HHHccCCccchhhcCCcc-----c
Confidence 3445555544 568999999999999999999999999999999888 444466778889999987 7
Q ss_pred EEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555 216 FLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ 295 (298)
Q Consensus 216 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~ 295 (298)
++-+|...|+|.+|..... .++.. +..|.++|.+|++.++| ++++|.|.|..++|||
T Consensus 265 Vih~GhsnGtVSlWSP~sk-------------ePLvK---iLcH~g~V~siAv~~~G-------~YMaTtG~Dr~~kIWD 321 (545)
T KOG1272|consen 265 VIHLGHSNGTVSLWSPNSK-------------EPLVK---ILCHRGPVSSIAVDRGG-------RYMATTGLDRKVKIWD 321 (545)
T ss_pred eEEEcCCCceEEecCCCCc-------------chHHH---HHhcCCCcceEEECCCC-------cEEeecccccceeEee
Confidence 8999999999999998765 33222 44699999999999999 9999999999999999
Q ss_pred ec
Q 037555 296 VN 297 (298)
Q Consensus 296 ~~ 297 (298)
++
T Consensus 322 lR 323 (545)
T KOG1272|consen 322 LR 323 (545)
T ss_pred ec
Confidence 97
No 201
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.70 E-value=2.7e-14 Score=116.19 Aligned_cols=210 Identities=10% Similarity=0.120 Sum_probs=133.7
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce----eeeccccccccEEEEEEcCCCCEEEEEe-CCCeEEEEE
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK----AMGRLQSHSLTVTQIRFSHDDNLLLSVS-RDRQFSVFA 131 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd 131 (298)
.....+.|+|++++|++++. .++.|.+|++++.. .+..+. +......++++|+++++++++ .++.|.+||
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~----~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d 154 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASY----NANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFT 154 (330)
T ss_pred CCceEEEECCCCCEEEEEEc----CCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEE
Confidence 35678999999999998864 47899999996432 222222 334567889999999886554 569999999
Q ss_pred eccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-CCeEEEEEccCC--c--ceeeeeecCC---CCCceEEE
Q 037555 132 IQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-DKTVKIWAVENK--S--SVKQILALPP---FNSSVTAL 203 (298)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~--~--~~~~~~~~~~---~~~~v~~~ 203 (298)
+................. .......+.|+|++++++++.. ++.|.+||++.. + ....+...+. .......+
T Consensus 155 ~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i 233 (330)
T PRK11028 155 LSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADI 233 (330)
T ss_pred ECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeE
Confidence 976221100000001111 1234578999999999988876 899999999742 2 1222211111 11223468
Q ss_pred EEeeccccCCccEEEEeec-CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEE
Q 037555 204 SWVGLDRQKNHGFLAVGME-SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQL 282 (298)
Q Consensus 204 ~~~~~~~~~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 282 (298)
.++|++ .+++++.. ++.|.+|++....... .....+. -......+.++|++ ++|
T Consensus 234 ~~~pdg-----~~lyv~~~~~~~I~v~~i~~~~~~~---------~~~~~~~----~~~~p~~~~~~~dg-------~~l 288 (330)
T PRK11028 234 HITPDG-----RHLYACDRTASLISVFSVSEDGSVL---------SFEGHQP----TETQPRGFNIDHSG-------KYL 288 (330)
T ss_pred EECCCC-----CEEEEecCCCCeEEEEEEeCCCCeE---------EEeEEEe----ccccCCceEECCCC-------CEE
Confidence 899998 67777754 7899999996531100 1111111 11244578999999 666
Q ss_pred Eeee-CCCcEEEeEec
Q 037555 283 ASCG-ADNTVRVFQVN 297 (298)
Q Consensus 283 ~s~~-~d~~i~iw~~~ 297 (298)
+++. .+++|.+|+++
T Consensus 289 ~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 289 IAAGQKSHHISVYEID 304 (330)
T ss_pred EEEEccCCcEEEEEEc
Confidence 6555 58999999874
No 202
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=3e-15 Score=129.02 Aligned_cols=204 Identities=20% Similarity=0.294 Sum_probs=146.6
Q ss_pred EEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc-cccccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccCCC
Q 037555 60 FSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ-SHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTGT 137 (298)
Q Consensus 60 ~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~ 137 (298)
.-++|.....+|.++ ++-..|+|||.+..+.+..+. +....|+++.-+- .|+.+++|..||.|++||.+....
T Consensus 1169 ~v~dWqQ~~G~Ll~t-----Gd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ 1243 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVT-----GDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP 1243 (1387)
T ss_pred eeeehhhhCCeEEec-----CCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCc
Confidence 455677655555555 236899999999877766654 3455666665543 578999999999999999987654
Q ss_pred CccceeeeEEeeccCCc--eEEEEEccCCC-EEEEeeCCCeEEEEEccCCcceeeeeecCCC---CCceEEEEEeecccc
Q 037555 138 GEIDYQLIARQEAHKRI--IWSCSWNPFGH-EFATGSRDKTVKIWAVENKSSVKQILALPPF---NSSVTALSWVGLDRQ 211 (298)
Q Consensus 138 ~~~~~~~~~~~~~~~~~--v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~ 211 (298)
...+...+.|+.. |..+.+.+.|- .|++|+.||.|++||++...... ..++..+ .+..+++..++..
T Consensus 1244 ----ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~-~~~iv~~~~yGs~lTal~VH~ha-- 1316 (1387)
T KOG1517|consen 1244 ----DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET-FLTIVAHWEYGSALTALTVHEHA-- 1316 (1387)
T ss_pred ----cccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc-cceeeeccccCccceeeeeccCC--
Confidence 2356677788877 99999998764 59999999999999999853222 1122222 3358999999988
Q ss_pred CCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcE
Q 037555 212 KNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTV 291 (298)
Q Consensus 212 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i 291 (298)
.++++|+. +.|+||++........ +.-..+ +....+.+.+++|+|.. .+|+.|..|.+|
T Consensus 1317 ---piiAsGs~-q~ikIy~~~G~~l~~~--------k~n~~F--~~q~~gs~scL~FHP~~-------~llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1317 ---PIIASGSA-QLIKIYSLSGEQLNII--------KYNPGF--MGQRIGSVSCLAFHPHR-------LLLAAGSADSTV 1375 (1387)
T ss_pred ---CeeeecCc-ceEEEEecChhhhccc--------ccCccc--ccCcCCCcceeeecchh-------HhhhhccCCceE
Confidence 69999988 9999999975422111 000001 11234567999999998 789999999999
Q ss_pred EEeEe
Q 037555 292 RVFQV 296 (298)
Q Consensus 292 ~iw~~ 296 (298)
.||.-
T Consensus 1376 ~iYs~ 1380 (1387)
T KOG1517|consen 1376 SIYSC 1380 (1387)
T ss_pred EEeec
Confidence 99864
No 203
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.69 E-value=1.5e-13 Score=111.78 Aligned_cols=217 Identities=10% Similarity=0.136 Sum_probs=138.8
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC-cee--eeccccccccEEEEEEcCCCCEEEEEeC-C
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS-WKA--MGRLQSHSLTVTQIRFSHDDNLLLSVSR-D 124 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~-~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d 124 (298)
++.+. +.+....++++|++++|++++. .++.|.+|+++. ++. +.... .......++|+|+++++++++. +
T Consensus 28 ~~~~~-~~~~~~~l~~spd~~~lyv~~~----~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~ 101 (330)
T PRK11028 28 LQVVD-VPGQVQPMVISPDKRHLYVGVR----PEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNA 101 (330)
T ss_pred eeEEe-cCCCCccEEECCCCCEEEEEEC----CCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCC
Confidence 34443 3456778999999999988763 478899999863 322 22222 2334678999999998888764 8
Q ss_pred CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee-CCCeEEEEEccCCcceee----eeecCCCCCc
Q 037555 125 RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS-RDKTVKIWAVENKSSVKQ----ILALPPFNSS 199 (298)
Q Consensus 125 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~----~~~~~~~~~~ 199 (298)
+.|.+|+++..... ......+. +......++++|+++++++++ .++.|.+||+.+...+.. ..... ....
T Consensus 102 ~~v~v~~~~~~g~~---~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~ 176 (330)
T PRK11028 102 NCVSVSPLDKDGIP---VAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAG 176 (330)
T ss_pred CeEEEEEECCCCCC---CCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCC
Confidence 89999999742211 11122222 223467788999998886655 569999999986432211 00122 2345
Q ss_pred eEEEEEeeccccCCccEEEEeec-CCcEEEEEeeecccccccCCCCCCcceeeeeccCC---cccceEEEEEeecCCCCC
Q 037555 200 VTALSWVGLDRQKNHGFLAVGME-SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFA---CHVAAVNRMAWKTHEKPK 275 (298)
Q Consensus 200 v~~~~~~~~~~~~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~ 275 (298)
...++|+|++ .+++++++ ++.|.+|++....... .....+.... .+......+.++|++
T Consensus 177 p~~~~~~pdg-----~~lyv~~~~~~~v~v~~~~~~~~~~---------~~~~~~~~~p~~~~~~~~~~~i~~~pdg--- 239 (330)
T PRK11028 177 PRHMVFHPNQ-----QYAYCVNELNSSVDVWQLKDPHGEI---------ECVQTLDMMPADFSDTRWAADIHITPDG--- 239 (330)
T ss_pred CceEEECCCC-----CEEEEEecCCCEEEEEEEeCCCCCE---------EEEEEEecCCCcCCCCccceeEEECCCC---
Confidence 6789999998 67777765 8999999997421000 1122221111 112234468899999
Q ss_pred CCcceEEEeee-CCCcEEEeEec
Q 037555 276 NSRTMQLASCG-ADNTVRVFQVN 297 (298)
Q Consensus 276 ~~~~~~l~s~~-~d~~i~iw~~~ 297 (298)
++|+++. .++.|.+|+++
T Consensus 240 ----~~lyv~~~~~~~I~v~~i~ 258 (330)
T PRK11028 240 ----RHLYACDRTASLISVFSVS 258 (330)
T ss_pred ----CEEEEecCCCCeEEEEEEe
Confidence 6777664 57899999873
No 204
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=6e-16 Score=122.73 Aligned_cols=215 Identities=20% Similarity=0.278 Sum_probs=162.7
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc-cccccEEEEEEcC--CCCEEEEEeCCC
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ-SHSLTVTQIRFSH--DDNLLLSVSRDR 125 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~dg 125 (298)
...|..|.+.|..+.|+..|..|++| +.|..|.+||..++.....+. +|...|....|-| +...+++++.||
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~Sg-----SDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dg 209 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASG-----SDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDG 209 (559)
T ss_pred hhcccCCCCccceeeecccCceeecc-----CccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccC
Confidence 56788999999999999999999999 459999999999888877765 7999999999988 456899999999
Q ss_pred eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCC-CEEEEeeCCCeEEEEEccCCcceeeee-------------
Q 037555 126 QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG-HEFATGSRDKTVKIWAVENKSSVKQIL------------- 191 (298)
Q Consensus 126 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~------------- 191 (298)
.+++=.+...+. ....+.+..|.++|..++.-|+. ..|++++.|+.+.-+|++.......+.
T Consensus 210 qvr~s~i~~t~~----~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~ 285 (559)
T KOG1334|consen 210 QVRVSEILETGY----VENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLY 285 (559)
T ss_pred ceeeeeeccccc----eecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeee
Confidence 999887765432 23355667899999999999955 678899999999988887632211000
Q ss_pred ---------------------------------------ec------CCCCCceEEEEEeeccc----------------
Q 037555 192 ---------------------------------------AL------PPFNSSVTALSWVGLDR---------------- 210 (298)
Q Consensus 192 ---------------------------------------~~------~~~~~~v~~~~~~~~~~---------------- 210 (298)
.+ ......|++++|+.++.
T Consensus 286 ~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~ 365 (559)
T KOG1334|consen 286 TIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNK 365 (559)
T ss_pred eEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecc
Confidence 00 01123467777774442
Q ss_pred -------------------------------------cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeee
Q 037555 211 -------------------------------------QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRF 253 (298)
Q Consensus 211 -------------------------------------~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 253 (298)
.|..+|+++|++-|.|.||+-.++ +.+..
T Consensus 366 ~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~-------------eii~~- 431 (559)
T KOG1334|consen 366 SMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG-------------EIIRF- 431 (559)
T ss_pred ccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-------------HHHHH-
Confidence 344577888888888888887765 33332
Q ss_pred ccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555 254 DPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ 295 (298)
Q Consensus 254 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~ 295 (298)
+.+-...|++|.-+|.- ..||++|-|.-|+||-
T Consensus 432 --MegDr~VVNCLEpHP~~-------PvLAsSGid~DVKIWT 464 (559)
T KOG1334|consen 432 --MEGDRHVVNCLEPHPHL-------PVLASSGIDHDVKIWT 464 (559)
T ss_pred --hhcccceEeccCCCCCC-------chhhccCCccceeeec
Confidence 33445589999999988 7999999999999995
No 205
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=5.1e-15 Score=127.66 Aligned_cols=210 Identities=14% Similarity=0.244 Sum_probs=149.2
Q ss_pred CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccc---cccEEEEEEcC--CCCEEEEEeCCCeEEE
Q 037555 55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSH---SLTVTQIRFSH--DDNLLLSVSRDRQFSV 129 (298)
Q Consensus 55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~---~~~v~~~~~~~--~~~~l~~~~~dg~i~i 129 (298)
...+...+.|+|-...++++ ++.-.|+|||.+.++.+..|..+ ...|+.+.+-. |..++++|+.||.|+|
T Consensus 1063 n~~~pk~~~~hpf~p~i~~a-----d~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRI 1137 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHPFEPQIAAA-----DDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRI 1137 (1387)
T ss_pred CCCCCceeeecCCCceeEEc-----CCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEE
Confidence 33456788899988899998 45678999999999888777643 45688888866 5568999999999999
Q ss_pred EEeccCCCCccceeeeEEeec-------cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC-CCCCceE
Q 037555 130 FAIQRTGTGEIDYQLIARQEA-------HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP-PFNSSVT 201 (298)
Q Consensus 130 wd~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~~~~v~ 201 (298)
|+--...... .+.+....+ ..+.=.-+.|.....+|++++.-..|+|||........ .++ +...-++
T Consensus 1138 wk~y~~~~~~--~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~---diP~~s~t~vT 1212 (1387)
T KOG1517|consen 1138 WKDYADKWKK--PELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVA---DIPYGSSTLVT 1212 (1387)
T ss_pred ecccccccCC--ceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEe---ecccCCCccce
Confidence 9754332111 223322221 11111346788877777777778899999998776665 333 2344566
Q ss_pred EEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccce--EEEEEeecCCCCCCCcc
Q 037555 202 ALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAA--VNRMAWKTHEKPKNSRT 279 (298)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~ 279 (298)
++.-+... ++.+++|..||.|++||.+..... ..+...+.|... |..+.+.+.|-
T Consensus 1213 aLS~~~~~----gn~i~AGfaDGsvRvyD~R~a~~d-------------s~v~~~R~h~~~~~Iv~~slq~~G~------ 1269 (1387)
T KOG1517|consen 1213 ALSADLVH----GNIIAAGFADGSVRVYDRRMAPPD-------------SLVCVYREHNDVEPIVHLSLQRQGL------ 1269 (1387)
T ss_pred eecccccC----CceEEEeecCCceEEeecccCCcc-------------ccceeecccCCcccceeEEeecCCC------
Confidence 66544332 389999999999999999876322 112224457776 99999999873
Q ss_pred eEEEeeeCCCcEEEeEec
Q 037555 280 MQLASCGADNTVRVFQVN 297 (298)
Q Consensus 280 ~~l~s~~~d~~i~iw~~~ 297 (298)
..|++++.||.|++||++
T Consensus 1270 ~elvSgs~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1270 GELVSGSQDGDIQLLDLR 1287 (1387)
T ss_pred cceeeeccCCeEEEEecc
Confidence 469999999999999987
No 206
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.68 E-value=8.4e-16 Score=123.42 Aligned_cols=157 Identities=16% Similarity=0.236 Sum_probs=121.9
Q ss_pred CceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEE
Q 037555 81 AAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW 160 (298)
Q Consensus 81 ~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 160 (298)
.||.+.+.+- .++....+..|.+.+.+-.|+|||.-|++++.||.|++|.-.- -+...+.....+|+|++|
T Consensus 83 ~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG--------MLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 83 NDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG--------MLRSTVVQNEESIRCARW 153 (737)
T ss_pred CCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc--------hHHHHHhhcCceeEEEEE
Confidence 3777777764 3666677888999999999999999999999999999998542 223333445678999999
Q ss_pred ccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccccccc
Q 037555 161 NPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVS 240 (298)
Q Consensus 161 ~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~ 240 (298)
.|+.+.++.+.. +.+.+=-+.....+- ....|.+-|.++.|++.+ +++++|++|-..+|||....
T Consensus 154 ~p~S~~vl~c~g-~h~~IKpL~~n~k~i---~WkAHDGiiL~~~W~~~s-----~lI~sgGED~kfKvWD~~G~------ 218 (737)
T KOG1524|consen 154 APNSNSIVFCQG-GHISIKPLAANSKII---RWRAHDGLVLSLSWSTQS-----NIIASGGEDFRFKIWDAQGA------ 218 (737)
T ss_pred CCCCCceEEecC-CeEEEeeccccccee---EEeccCcEEEEeecCccc-----cceeecCCceeEEeecccCc------
Confidence 998877766654 445555554433333 567899999999999998 89999999999999997643
Q ss_pred CCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555 241 TPAPSTANIIIRFDPFACHVAAVNRMAWKTHE 272 (298)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 272 (298)
. +.....|..+|++++|+|+.
T Consensus 219 --------~---Lf~S~~~ey~ITSva~npd~ 239 (737)
T KOG1524|consen 219 --------N---LFTSAAEEYAITSVAFNPEK 239 (737)
T ss_pred --------c---cccCChhccceeeeeecccc
Confidence 1 22245699999999999985
No 207
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=2.3e-13 Score=102.75 Aligned_cols=162 Identities=15% Similarity=0.184 Sum_probs=121.0
Q ss_pred CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcC-CceeeeccccccccEEEEEEcCC--CCEEEE-EeCCCeEEEE
Q 037555 55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVG-SWKAMGRLQSHSLTVTQIRFSHD--DNLLLS-VSRDRQFSVF 130 (298)
Q Consensus 55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~-~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~-~~~dg~i~iw 130 (298)
...+|.++.+.++ .+++.- .+.|+||... ..+.+..+..-..+=--++..|. ..+|+- |-.-|.|.|-
T Consensus 93 f~~~I~~V~l~r~--riVvvl------~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~ 164 (346)
T KOG2111|consen 93 FNSEIKAVKLRRD--RIVVVL------ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIV 164 (346)
T ss_pred eccceeeEEEcCC--eEEEEe------cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEE
Confidence 5678888888765 455542 6889999987 44555554322211113444452 223333 4457999999
Q ss_pred EeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCe-EEEEEccCCcceeeeeecCCCCCceEEEEEeecc
Q 037555 131 AIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKT-VKIWAVENKSSVKQILALPPFNSSVTALSWVGLD 209 (298)
Q Consensus 131 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (298)
|+..... .....+.+|...|.+++.+.+|..+|++|..|+ |||||..+++.+.+++.-. ....|.+++|+|+.
T Consensus 165 dL~~~~~-----~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-d~A~iy~iaFSp~~ 238 (346)
T KOG2111|consen 165 DLASTKP-----NAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-DRADIYCIAFSPNS 238 (346)
T ss_pred EhhhcCc-----CCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-chheEEEEEeCCCc
Confidence 9986432 134677899999999999999999999999998 7999999999998765543 45779999999999
Q ss_pred ccCCccEEEEeecCCcEEEEEeeecc
Q 037555 210 RQKNHGFLAVGMESGVIELWSISVNR 235 (298)
Q Consensus 210 ~~~~~~~l~~g~~dg~i~vwd~~~~~ 235 (298)
.+|+++++.|+|+|+.++...
T Consensus 239 -----s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 239 -----SWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred -----cEEEEEcCCCeEEEEEeecCC
Confidence 799999999999999998754
No 208
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=3.6e-14 Score=119.40 Aligned_cols=194 Identities=11% Similarity=0.085 Sum_probs=130.3
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEE-EEeCCCe-
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLL-SVSRDRQ- 126 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~- 126 (298)
.+.+..|...+.+.+|+|||+.|+..+... .+..|++||+.+++.. .+..+.+.+...+|+|||+.|+ +.+.++.
T Consensus 194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~--g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~ 270 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPNRQEITYMSYAN--GRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNT 270 (435)
T ss_pred cEEEecCCCCeEeeEECCCCCEEEEEEecC--CCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCc
Confidence 456778888999999999999999886532 3579999999887653 3444666778899999998765 5566665
Q ss_pred -EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-CC--eEEEEEccCCcceeeeeecCCCCCceEE
Q 037555 127 -FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-DK--TVKIWAVENKSSVKQILALPPFNSSVTA 202 (298)
Q Consensus 127 -i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~~~~~v~~ 202 (298)
|.+||+... ....+..+........|+|+++.|+..+. +| .|.++|+..+.. . .+......+..
T Consensus 271 ~Iy~~d~~~~--------~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~---~lt~~~~~~~~ 338 (435)
T PRK05137 271 DIYTMDLRSG--------TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-R---RISFGGGRYST 338 (435)
T ss_pred eEEEEECCCC--------ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-E---EeecCCCcccC
Confidence 556676542 23344555556677899999998887764 33 588888776543 3 22223445667
Q ss_pred EEEeeccccCCccEEEEeecC---CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcc
Q 037555 203 LSWVGLDRQKNHGFLAVGMES---GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRT 279 (298)
Q Consensus 203 ~~~~~~~~~~~~~~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 279 (298)
..|+|++ ..|+....+ ..|.+||+..+. ...+. ....+..+.|+||+
T Consensus 339 ~~~SpdG-----~~ia~~~~~~~~~~i~~~d~~~~~--------------~~~lt----~~~~~~~p~~spDG------- 388 (435)
T PRK05137 339 PVWSPRG-----DLIAFTKQGGGQFSIGVMKPDGSG--------------ERILT----SGFLVEGPTWAPNG------- 388 (435)
T ss_pred eEECCCC-----CEEEEEEcCCCceEEEEEECCCCc--------------eEecc----CCCCCCCCeECCCC-------
Confidence 8899998 566665433 357777764431 11221 12246678999999
Q ss_pred eEEEeeeC
Q 037555 280 MQLASCGA 287 (298)
Q Consensus 280 ~~l~s~~~ 287 (298)
+.|+..+.
T Consensus 389 ~~i~~~~~ 396 (435)
T PRK05137 389 RVIMFFRQ 396 (435)
T ss_pred CEEEEEEc
Confidence 66655443
No 209
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.6e-15 Score=117.48 Aligned_cols=175 Identities=16% Similarity=0.124 Sum_probs=135.9
Q ss_pred eccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEE-eeccCCceEEEEEccCCCEEEEeeCCCe
Q 037555 97 GRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR-QEAHKRIIWSCSWNPFGHEFATGSRDKT 175 (298)
Q Consensus 97 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 175 (298)
+-+.+|.+.|.++.|+.++++|++|+.|..+++|.+...-.... .+++.. -..|...|.+++|.....++++|..+++
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~-~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT-PKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC-CCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 34568999999999999999999999999999999875322111 122322 2346689999999999999999999999
Q ss_pred EEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeecc
Q 037555 176 VKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDP 255 (298)
Q Consensus 176 i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (298)
|.+.|+++.+.+... ......+.|+.+..+|.. +.+++.+.++.|.+||.+.... ....+-
T Consensus 129 VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~D-----N~~~~~t~~~~V~~~D~Rd~~~------------~~~~~~- 189 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTD-----NTLIVVTRAKLVSFIDNRDRQN------------PISLVL- 189 (609)
T ss_pred eEeeecccceeeeee-cccCcccceeecccCCCC-----ceEEEEecCceEEEEeccCCCC------------CCceee-
Confidence 999999998776522 222234589999999997 8999999999999999987632 111111
Q ss_pred CCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 256 FACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 256 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.........++-|+|..+ .+|++.+..+-+-+||.+
T Consensus 190 ~AN~~~~F~t~~F~P~~P------~Li~~~~~~~G~~~~D~R 225 (609)
T KOG4227|consen 190 PANSGKNFYTAEFHPETP------ALILVNSETGGPNVFDRR 225 (609)
T ss_pred ecCCCccceeeeecCCCc------eeEEeccccCCCCceeec
Confidence 223456778899999875 899999999999999976
No 210
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.66 E-value=3.2e-14 Score=105.61 Aligned_cols=154 Identities=14% Similarity=0.266 Sum_probs=107.4
Q ss_pred EEEEEcCCCCEEEeEec-c--C--CCCceEEEEEEcCC-ceeeecccc-ccccEEEEEEcCCCCEEEEE--eCCCeEEEE
Q 037555 60 FSLCCDHQGKLVASSCK-A--Q--STAAAEIWLWEVGS-WKAMGRLQS-HSLTVTQIRFSHDDNLLLSV--SRDRQFSVF 130 (298)
Q Consensus 60 ~~~~~s~~~~~l~~~~~-~--~--~~~d~~i~vw~~~~-~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~--~~dg~i~iw 130 (298)
..+.|+|+|.+|+.-.. + . ...-+...+|.++. ......+.. ..++|.+++|+|+++.|++. ..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 46789999987765533 0 0 01123445555522 233444432 34579999999999987654 457899999
Q ss_pred EeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC---CCeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555 131 AIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR---DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG 207 (298)
Q Consensus 131 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (298)
|++ ...+..+. ...+..+.|+|+|++|++++. .|.|.+||.++.+.+. ... + ..++.++|+|
T Consensus 89 d~~--------~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~---~~~-~-~~~t~~~WsP 153 (194)
T PF08662_consen 89 DVK--------GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS---TFE-H-SDATDVEWSP 153 (194)
T ss_pred cCc--------ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee---ccc-c-CcEEEEEEcC
Confidence 996 33444443 567789999999999999874 3679999999777665 433 3 3478999999
Q ss_pred ccccCCccEEEEeec------CCcEEEEEeee
Q 037555 208 LDRQKNHGFLAVGME------SGVIELWSISV 233 (298)
Q Consensus 208 ~~~~~~~~~l~~g~~------dg~i~vwd~~~ 233 (298)
+| .+++++.. |..++||++..
T Consensus 154 dG-----r~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 154 DG-----RYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CC-----CEEEEEEeccceeccccEEEEEecC
Confidence 99 68887764 77889999853
No 211
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.66 E-value=3e-14 Score=105.81 Aligned_cols=149 Identities=19% Similarity=0.419 Sum_probs=103.9
Q ss_pred EEEEEcCCCCEEEEEeC----------CCeEEEEEeccCCCCccceeeeEEee-ccCCceEEEEEccCCCEEEEee--CC
Q 037555 107 TQIRFSHDDNLLLSVSR----------DRQFSVFAIQRTGTGEIDYQLIARQE-AHKRIIWSCSWNPFGHEFATGS--RD 173 (298)
Q Consensus 107 ~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~--~d 173 (298)
..+.|+|+|++|+.-.. -+...+|.++.... ....+. ...++|.+++|+|+++.|++.. .+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~------~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~ 82 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI------PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMP 82 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC------ccceeeccCCCceEEEEECcCCCEEEEEEccCC
Confidence 45789999987665432 23466666654321 122222 2345799999999999876654 56
Q ss_pred CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeec---CCcEEEEEeeecccccccCCCCCCccee
Q 037555 174 KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGME---SGVIELWSISVNRTNDVSTPAPSTANII 250 (298)
Q Consensus 174 g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 250 (298)
+.|.+||++ .+.+. .+. ...+..+.|+|.| .+|++++. .|.|.+||.++. +.+
T Consensus 83 ~~v~lyd~~-~~~i~---~~~--~~~~n~i~wsP~G-----~~l~~~g~~n~~G~l~~wd~~~~-------------~~i 138 (194)
T PF08662_consen 83 AKVTLYDVK-GKKIF---SFG--TQPRNTISWSPDG-----RFLVLAGFGNLNGDLEFWDVRKK-------------KKI 138 (194)
T ss_pred cccEEEcCc-ccEeE---eec--CCCceEEEECCCC-----CEEEEEEccCCCcEEEEEECCCC-------------EEe
Confidence 789999997 34333 443 4667899999999 78888764 467999999865 444
Q ss_pred eeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC------CCcEEEeEec
Q 037555 251 IRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA------DNTVRVFQVN 297 (298)
Q Consensus 251 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~------d~~i~iw~~~ 297 (298)
.... | ..++.++|+|+| ++|+++.. |+.++||++.
T Consensus 139 ~~~~----~-~~~t~~~WsPdG-------r~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 139 STFE----H-SDATDVEWSPDG-------RYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred eccc----c-CcEEEEEEcCCC-------CEEEEEEeccceeccccEEEEEec
Confidence 4332 3 347899999999 88888874 7889999874
No 212
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=2.7e-14 Score=120.88 Aligned_cols=203 Identities=15% Similarity=0.215 Sum_probs=156.2
Q ss_pred eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCC---CEEEEEeCCCeEEEEEeccC
Q 037555 59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDD---NLLLSVSRDRQFSVFAIQRT 135 (298)
Q Consensus 59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~ 135 (298)
-..-.|++|+++++... +..|.||...+++++..+..|..++..+.+.|.. .++++++.+|.|++||...+
T Consensus 19 ~~~avfSnD~k~l~~~~------~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~ 92 (792)
T KOG1963|consen 19 KSPAVFSNDAKFLFLCT------GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDG 92 (792)
T ss_pred ecccccccCCcEEEEee------CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCc
Confidence 33456899999888875 6789999999999999999999999999998844 46789999999999998654
Q ss_pred CCCcc---------------------------------------------------------------------------
Q 037555 136 GTGEI--------------------------------------------------------------------------- 140 (298)
Q Consensus 136 ~~~~~--------------------------------------------------------------------------- 140 (298)
.....
T Consensus 93 ~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~g 172 (792)
T KOG1963|consen 93 ELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSG 172 (792)
T ss_pred EEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCc
Confidence 31000
Q ss_pred ceee------e---------E------EeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccC-CcceeeeeecCCCCC
Q 037555 141 DYQL------I---------A------RQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVEN-KSSVKQILALPPFNS 198 (298)
Q Consensus 141 ~~~~------~---------~------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~ 198 (298)
.... . . .-..|.-.+++.+++|.+++++++..||+|.+|.--. .........++-|..
T Consensus 173 e~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~ 252 (792)
T KOG1963|consen 173 EFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHD 252 (792)
T ss_pred eEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccc
Confidence 0000 0 0 0012445578899999999999999999999996433 222223335677889
Q ss_pred ceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCc
Q 037555 199 SVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSR 278 (298)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 278 (298)
.|.+++|+++| .+|++|+.+|.+.+|.+.+++. .+ +..-.++|..+.++||+
T Consensus 253 ~V~~L~fS~~G-----~~LlSGG~E~VLv~Wq~~T~~k---------------qf--LPRLgs~I~~i~vS~ds------ 304 (792)
T KOG1963|consen 253 EVNSLSFSSDG-----AYLLSGGREGVLVLWQLETGKK---------------QF--LPRLGSPILHIVVSPDS------ 304 (792)
T ss_pred ccceeEEecCC-----ceEeecccceEEEEEeecCCCc---------------cc--ccccCCeeEEEEEcCCC------
Confidence 99999999999 8999999999999999988742 11 23357899999999999
Q ss_pred ceEEEeeeCCCcEEEeEe
Q 037555 279 TMQLASCGADNTVRVFQV 296 (298)
Q Consensus 279 ~~~l~s~~~d~~i~iw~~ 296 (298)
.+.+.+..|+.|.+-..
T Consensus 305 -~~~sl~~~DNqI~li~~ 321 (792)
T KOG1963|consen 305 -DLYSLVLEDNQIHLIKA 321 (792)
T ss_pred -CeEEEEecCceEEEEec
Confidence 78888888999988654
No 213
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=6.3e-14 Score=117.36 Aligned_cols=203 Identities=10% Similarity=0.031 Sum_probs=130.7
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEE-eCCC--
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSV-SRDR-- 125 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg-- 125 (298)
.+.+..+...+.+.+|+|||+.|+..+.. ..+..|.+|++.+++.... ......+....|+|||+.|+.. +.+|
T Consensus 191 ~~~lt~~~~~~~~p~wSPDG~~la~~s~~--~g~~~i~i~dl~~G~~~~l-~~~~~~~~~~~~SPDG~~La~~~~~~g~~ 267 (429)
T PRK03629 191 QFVVHRSPQPLMSPAWSPDGSKLAYVTFE--SGRSALVIQTLANGAVRQV-ASFPRHNGAPAFSPDGSKLAFALSKTGSL 267 (429)
T ss_pred CEEeecCCCceeeeEEcCCCCEEEEEEec--CCCcEEEEEECCCCCeEEc-cCCCCCcCCeEECCCCCEEEEEEcCCCCc
Confidence 34555667789999999999999876542 2356899999988754332 2223334568999999987754 4455
Q ss_pred eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC-Ce--EEEEEccCCcceeeeeecCCCCCceEE
Q 037555 126 QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD-KT--VKIWAVENKSSVKQILALPPFNSSVTA 202 (298)
Q Consensus 126 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~--i~~wd~~~~~~~~~~~~~~~~~~~v~~ 202 (298)
.|.+||+.... ...+..+...+....|+|+++.|+..+.+ +. |.++|+.++.. . .+.........
T Consensus 268 ~I~~~d~~tg~--------~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~---~lt~~~~~~~~ 335 (429)
T PRK03629 268 NLYVMDLASGQ--------IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-Q---RITWEGSQNQD 335 (429)
T ss_pred EEEEEECCCCC--------EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-E---EeecCCCCccC
Confidence 58888887532 23333444567889999999988877754 44 44556665543 2 22223344567
Q ss_pred EEEeeccccCCccEEEEeec-C--CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcc
Q 037555 203 LSWVGLDRQKNHGFLAVGME-S--GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRT 279 (298)
Q Consensus 203 ~~~~~~~~~~~~~~l~~g~~-d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 279 (298)
..|+|++ .+|+..+. + ..|.+||+.++. ...+.. . ....+..|+||+
T Consensus 336 ~~~SpDG-----~~Ia~~~~~~g~~~I~~~dl~~g~--------------~~~Lt~--~--~~~~~p~~SpDG------- 385 (429)
T PRK03629 336 ADVSSDG-----KFMVMVSSNGGQQHIAKQDLATGG--------------VQVLTD--T--FLDETPSIAPNG------- 385 (429)
T ss_pred EEECCCC-----CEEEEEEccCCCceEEEEECCCCC--------------eEEeCC--C--CCCCCceECCCC-------
Confidence 8999998 56665543 3 357888886652 122211 1 122457899999
Q ss_pred eEEEeeeCCCc---EEEeEe
Q 037555 280 MQLASCGADNT---VRVFQV 296 (298)
Q Consensus 280 ~~l~s~~~d~~---i~iw~~ 296 (298)
.+|+..+.++. +.++++
T Consensus 386 ~~i~~~s~~~~~~~l~~~~~ 405 (429)
T PRK03629 386 TMVIYSSSQGMGSVLNLVST 405 (429)
T ss_pred CEEEEEEcCCCceEEEEEEC
Confidence 78888887764 555554
No 214
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.2e-14 Score=117.81 Aligned_cols=176 Identities=9% Similarity=0.215 Sum_probs=126.2
Q ss_pred EEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCC-----ceEEEEEcc
Q 037555 88 WEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKR-----IIWSCSWNP 162 (298)
Q Consensus 88 w~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~ 162 (298)
++++.|+.+..|....+.++++..++...+|++|+.+|.|-+||.+....... ......+..|.+ .|+++.|+.
T Consensus 160 lNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~-l~~~~~v~s~pg~~~~~svTal~F~d 238 (703)
T KOG2321|consen 160 LNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGT-LDAASSVNSHPGGDAAPSVTALKFRD 238 (703)
T ss_pred EEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhhee-eecccccCCCccccccCcceEEEecC
Confidence 33333444444444456788888998888999999999999999987443211 111122223333 399999999
Q ss_pred CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCC
Q 037555 163 FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTP 242 (298)
Q Consensus 163 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 242 (298)
+|-.+++|+.+|.+.|||++..+++.. .-+...-+|..+.|.+.+. +..+++ .+...++|||-.++
T Consensus 239 ~gL~~aVGts~G~v~iyDLRa~~pl~~--kdh~~e~pi~~l~~~~~~~---q~~v~S-~Dk~~~kiWd~~~G-------- 304 (703)
T KOG2321|consen 239 DGLHVAVGTSTGSVLIYDLRASKPLLV--KDHGYELPIKKLDWQDTDQ---QNKVVS-MDKRILKIWDECTG-------- 304 (703)
T ss_pred CceeEEeeccCCcEEEEEcccCCceee--cccCCccceeeecccccCC---CceEEe-cchHHhhhcccccC--------
Confidence 999999999999999999999887652 2234567899999988742 134444 45678999999888
Q ss_pred CCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEe
Q 037555 243 APSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVF 294 (298)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 294 (298)
+.+..+. ....++.+|+-|++ .+++++-.++.+..|
T Consensus 305 -----k~~asiE----pt~~lND~C~~p~s-------Gm~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 305 -----KPMASIE----PTSDLNDFCFVPGS-------GMFFTANESSKMHTY 340 (703)
T ss_pred -----Cceeecc----ccCCcCceeeecCC-------ceEEEecCCCcceeE
Confidence 5555544 34559999999998 899999888776554
No 215
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=3.7e-14 Score=108.88 Aligned_cols=201 Identities=15% Similarity=0.236 Sum_probs=138.7
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc-cccccEEEEEEcCCC-CEEEEEeCCCeEEEEEecc
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ-SHSLTVTQIRFSHDD-NLLLSVSRDRQFSVFAIQR 134 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 134 (298)
-.+..++|++.-..+|++ ..|-.|++|+-.+ +....++ .....|++++|-|.+ +.|+.|+ -+-|++|....
T Consensus 99 ~dlr~~aWhqH~~~fava-----~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~ 171 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVA-----TNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSR 171 (445)
T ss_pred cceeeEeechhhhhhhhh-----ccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCc
Confidence 357788999866667777 4588999999876 4444443 345679999999955 4555555 45688998765
Q ss_pred CCCCccc-------eeeeEEeeccCCceEEEEEccCCCEEEEeeC-CCeEEEEEccCCcceeeeeecCCCCCceEEEEEe
Q 037555 135 TGTGEID-------YQLIARQEAHKRIIWSCSWNPFGHEFATGSR-DKTVKIWAVENKSSVKQILALPPFNSSVTALSWV 206 (298)
Q Consensus 135 ~~~~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~ 206 (298)
....... ...+....+| .+|+++.|++|+..+++++. |..|++||..++..+. -.....+.+.-+.|+
T Consensus 172 tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~p---L~~~glgg~slLkwS 247 (445)
T KOG2139|consen 172 TLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIP---LIPKGLGGFSLLKWS 247 (445)
T ss_pred ccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccc---ccccCCCceeeEEEc
Confidence 4322110 0112222334 68999999999999999885 6789999999987764 222345678899999
Q ss_pred eccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeee
Q 037555 207 GLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCG 286 (298)
Q Consensus 207 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~ 286 (298)
|++ .+|+++.-|+..++|+..... .... .....+.|...+|+|.|. .+|++++
T Consensus 248 Pdg-----d~lfaAt~davfrlw~e~q~w------------t~er----w~lgsgrvqtacWspcGs------fLLf~~s 300 (445)
T KOG2139|consen 248 PDG-----DVLFAATCDAVFRLWQENQSW------------TKER----WILGSGRVQTACWSPCGS------FLLFACS 300 (445)
T ss_pred CCC-----CEEEEecccceeeeehhcccc------------eecc----eeccCCceeeeeecCCCC------EEEEEEc
Confidence 999 799999999999999654331 1111 112345899999999994 5555555
Q ss_pred CCCcEEEeEec
Q 037555 287 ADNTVRVFQVN 297 (298)
Q Consensus 287 ~d~~i~iw~~~ 297 (298)
.. -++|.+.
T Consensus 301 gs--p~lysl~ 309 (445)
T KOG2139|consen 301 GS--PRLYSLT 309 (445)
T ss_pred CC--ceEEEEe
Confidence 43 4455543
No 216
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=7.4e-14 Score=117.05 Aligned_cols=197 Identities=11% Similarity=0.122 Sum_probs=128.2
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEE-EEeCCCeE
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLL-SVSRDRQF 127 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i 127 (298)
.+.+..+...+.+.+|+|+|+.|+..+.+ .....|.+||+.+++... +......+....|+|||+.|+ +.+.+|..
T Consensus 188 ~~~l~~~~~~v~~p~wSPDG~~la~~s~~--~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~ 264 (427)
T PRK02889 188 AQSALSSPEPIISPAWSPDGTKLAYVSFE--SKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNS 264 (427)
T ss_pred ceEeccCCCCcccceEcCCCCEEEEEEcc--CCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCc
Confidence 35566778889999999999999988642 224679999998876543 333345567899999998776 56778887
Q ss_pred EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-CCeEEEEEcc--CCcceeeeeecCCCCCceEEEE
Q 037555 128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-DKTVKIWAVE--NKSSVKQILALPPFNSSVTALS 204 (298)
Q Consensus 128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~--~~~~~~~~~~~~~~~~~v~~~~ 204 (298)
.+|.++... .....+..+........|+|+++.|+..+. +|...+|.+. ++.. ..+ .+. .......+
T Consensus 265 ~Iy~~d~~~------~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~l-t~~--g~~~~~~~ 334 (427)
T PRK02889 265 QIYTVNADG------SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRV-TFT--GSYNTSPR 334 (427)
T ss_pred eEEEEECCC------CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEE-ecC--CCCcCceE
Confidence 888765422 113344444555667889999998887664 4566666553 3332 211 222 23344678
Q ss_pred EeeccccCCccEEEEeecCC---cEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceE
Q 037555 205 WVGLDRQKNHGFLAVGMESG---VIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQ 281 (298)
Q Consensus 205 ~~~~~~~~~~~~l~~g~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 281 (298)
|+|++ ++|+..+.++ .|.+||+.++.. ..+. .........|+||+ ..
T Consensus 335 ~SpDG-----~~Ia~~s~~~g~~~I~v~d~~~g~~--------------~~lt----~~~~~~~p~~spdg-------~~ 384 (427)
T PRK02889 335 ISPDG-----KLLAYISRVGGAFKLYVQDLATGQV--------------TALT----DTTRDESPSFAPNG-------RY 384 (427)
T ss_pred ECCCC-----CEEEEEEccCCcEEEEEEECCCCCe--------------EEcc----CCCCccCceECCCC-------CE
Confidence 99998 6777665543 699999876521 1221 11223567899999 56
Q ss_pred EEeeeCC
Q 037555 282 LASCGAD 288 (298)
Q Consensus 282 l~s~~~d 288 (298)
|+..+.+
T Consensus 385 l~~~~~~ 391 (427)
T PRK02889 385 ILYATQQ 391 (427)
T ss_pred EEEEEec
Confidence 6555543
No 217
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.64 E-value=1.9e-14 Score=125.87 Aligned_cols=186 Identities=14% Similarity=0.178 Sum_probs=134.7
Q ss_pred EEcCCceeeeccccccccEEEEEEcCCC-CEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCE
Q 037555 88 WEVGSWKAMGRLQSHSLTVTQIRFSHDD-NLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHE 166 (298)
Q Consensus 88 w~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 166 (298)
|+.+ |..+..+..|...+..++.++.. .++++|+.||+|++|+.+.........+...++......+.++.+.+.++.
T Consensus 1034 W~p~-G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPR-GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCcc-ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 6654 78888888899999999998755 899999999999999998654432223444455555778999999999999
Q ss_pred EEEeeCCCeEEEEEccCCccee------eeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccccccc
Q 037555 167 FATGSRDKTVKIWAVENKSSVK------QILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVS 240 (298)
Q Consensus 167 l~~~~~dg~i~~wd~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~ 240 (298)
+|+++.||.|++.++......+ .+...+.....+..-++..... ...++.+..-+.|..||+++..
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~---S~~lvy~T~~~~iv~~D~r~~~----- 1184 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQ---SHVLVYATDLSRIVSWDTRMRH----- 1184 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeeccccccc---ceeEEEEEeccceEEecchhhh-----
Confidence 9999999999999997622111 0111121122233334433332 1378888889999999998762
Q ss_pred CCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEecC
Q 037555 241 TPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVNV 298 (298)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~~ 298 (298)
....+. .....+.|++++.+|.+ ++++.|...|.+-+||++|
T Consensus 1185 --------~~w~lk-~~~~hG~vTSi~idp~~-------~WlviGts~G~l~lWDLRF 1226 (1431)
T KOG1240|consen 1185 --------DAWRLK-NQLRHGLVTSIVIDPWC-------NWLVIGTSRGQLVLWDLRF 1226 (1431)
T ss_pred --------hHHhhh-cCccccceeEEEecCCc-------eEEEEecCCceEEEEEeec
Confidence 222222 23345789999999999 8999999999999999986
No 218
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=1.9e-13 Score=103.17 Aligned_cols=180 Identities=12% Similarity=0.204 Sum_probs=130.5
Q ss_pred CceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccC--CceEEE
Q 037555 81 AAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHK--RIIWSC 158 (298)
Q Consensus 81 ~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~v~~~ 158 (298)
....|.|||=...+++..+. ...+|.++.+.++ .|++.- .+.|.+|..... .+.+..+.... ..+.++
T Consensus 73 ~pNkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n------~k~l~~~et~~NPkGlC~~ 142 (346)
T KOG2111|consen 73 PPNKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDN------PKLLHVIETRSNPKGLCSL 142 (346)
T ss_pred CCceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCC------hhheeeeecccCCCceEee
Confidence 45789999966677777776 7789999999865 444444 678999998743 23333333222 223333
Q ss_pred EEccCCCEEEEee-CCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCc-EEEEEeeeccc
Q 037555 159 SWNPFGHEFATGS-RDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGV-IELWSISVNRT 236 (298)
Q Consensus 159 ~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~-i~vwd~~~~~~ 236 (298)
+-..+...||.-+ .-|.|.+-|+...+.-.+. .+.+|.+.|.+++++-+| ..+|+++..|+ |+|||..++
T Consensus 143 ~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~-~I~AH~s~Iacv~Ln~~G-----t~vATaStkGTLIRIFdt~~g-- 214 (346)
T KOG2111|consen 143 CPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPS-IINAHDSDIACVALNLQG-----TLVATASTKGTLIRIFDTEDG-- 214 (346)
T ss_pred cCCCCceEEEcCCCccceEEEEEhhhcCcCCce-EEEcccCceeEEEEcCCc-----cEEEEeccCcEEEEEEEcCCC--
Confidence 3222334454433 5689999999876552111 567899999999999999 89999999986 899999998
Q ss_pred ccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 237 NDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
..+..+.. ......|.+|+|||+. .+|+.+|..|+|+|+.++
T Consensus 215 -----------~~l~E~RR-G~d~A~iy~iaFSp~~-------s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 215 -----------TLLQELRR-GVDRADIYCIAFSPNS-------SWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred -----------cEeeeeec-CCchheEEEEEeCCCc-------cEEEEEcCCCeEEEEEee
Confidence 55555542 2345789999999999 899999999999999875
No 219
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=2.6e-14 Score=119.90 Aligned_cols=216 Identities=13% Similarity=0.097 Sum_probs=140.6
Q ss_pred ccccccCCCCCceeeeccCCCccccccc---------CCCCc----eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCc
Q 037555 16 GLDTLESVPDAVPAVFTEPPIEDQLAWH---------TLWPE----SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAA 82 (298)
Q Consensus 16 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------~~~~~----~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d 82 (298)
....+..+...+....++ |+++.++.. .+|+. ...+....+....++|+|||+.|+.++. .+
T Consensus 195 ~~~~lt~~~~~v~~p~wS-PDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~----~~ 269 (429)
T PRK01742 195 NQFIVNRSSQPLMSPAWS-PDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASS----KD 269 (429)
T ss_pred CceEeccCCCccccceEc-CCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEe----cC
Confidence 355667777788888888 556665543 12321 1223223334457899999999888752 24
Q ss_pred e--EEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe-CCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEE
Q 037555 83 A--EIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS-RDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS 159 (298)
Q Consensus 83 ~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 159 (298)
+ .|++||+.+++. ..+..+...+....|+|||+.|+.++ .+|...||+++..... ...+ .+.. ....
T Consensus 270 g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~------~~~l-~~~~--~~~~ 339 (429)
T PRK01742 270 GVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG------ASLV-GGRG--YSAQ 339 (429)
T ss_pred CcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC------eEEe-cCCC--CCcc
Confidence 4 455667765554 44555677788999999999776554 5788999988653211 1112 2333 4578
Q ss_pred EccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccc
Q 037555 160 WNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDV 239 (298)
Q Consensus 160 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~ 239 (298)
|+|++++|+..+.++ +.+||+.+++... ..... ...++.|+|++ .+|+.++.++.+.+|.+.....
T Consensus 340 ~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~---lt~~~--~~~~~~~sPdG-----~~i~~~s~~g~~~~l~~~~~~G--- 405 (429)
T PRK01742 340 ISADGKTLVMINGDN-VVKQDLTSGSTEV---LSSTF--LDESPSISPNG-----IMIIYSSTQGLGKVLQLVSADG--- 405 (429)
T ss_pred CCCCCCEEEEEcCCC-EEEEECCCCCeEE---ecCCC--CCCCceECCCC-----CEEEEEEcCCCceEEEEEECCC---
Confidence 999999998888765 5569998876432 11111 23567899998 7888888899888888753210
Q ss_pred cCCCCCCcceeeeeccCCcccceEEEEEeecC
Q 037555 240 STPAPSTANIIIRFDPFACHVAAVNRMAWKTH 271 (298)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 271 (298)
..... +..|.+.+...+|+|-
T Consensus 406 --------~~~~~---l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 406 --------RFKAR---LPGSDGQVKFPAWSPY 426 (429)
T ss_pred --------CceEE---ccCCCCCCCCcccCCC
Confidence 33333 3357778888999984
No 220
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=7.8e-14 Score=107.98 Aligned_cols=203 Identities=12% Similarity=0.192 Sum_probs=146.9
Q ss_pred EeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce----eeeccccccccEEEEEEcCCC-CEEEEEeCC-
Q 037555 51 KLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK----AMGRLQSHSLTVTQIRFSHDD-NLLLSVSRD- 124 (298)
Q Consensus 51 ~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d- 124 (298)
.......+|..++.. ++ .|++| ..+|.+.+|..+.+. .+..+..+ ..+..+.-++.. .++++|+..
T Consensus 100 ~~~l~~~~I~gl~~~-dg-~Litc-----~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~ 171 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKLA-DG-TLITC-----VSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKEN 171 (412)
T ss_pred ccccccccccchhhc-CC-EEEEE-----ecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhc
Confidence 334455556666553 33 45555 348999999987443 22233333 456667767644 456668888
Q ss_pred -CeEEEEEeccCCCCccceeeeEEeec---------cCCceEEEEEccC--CCEEEEeeCCCeEEEEEccCCcceeeeee
Q 037555 125 -RQFSVFAIQRTGTGEIDYQLIARQEA---------HKRIIWSCSWNPF--GHEFATGSRDKTVKIWAVENKSSVKQILA 192 (298)
Q Consensus 125 -g~i~iwd~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 192 (298)
..+.+||+.... .+..-+. .+-.++.+.|-+. .+.|++++.-+.+++||.+.++. ++..
T Consensus 172 ~n~lkiwdle~~~-------qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR--PV~~ 242 (412)
T KOG3881|consen 172 INELKIWDLEQSK-------QIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR--PVAQ 242 (412)
T ss_pred ccceeeeecccce-------eeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc--ceeE
Confidence 889999998731 1211111 1224567888887 78999999999999999986553 3335
Q ss_pred cCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555 193 LPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE 272 (298)
Q Consensus 193 ~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 272 (298)
+.-...+++++...|.+ +++++|..-+.+..||++.+ ...... +.+..+.|.+|..+|..
T Consensus 243 fd~~E~~is~~~l~p~g-----n~Iy~gn~~g~l~~FD~r~~-------------kl~g~~--~kg~tGsirsih~hp~~ 302 (412)
T KOG3881|consen 243 FDFLENPISSTGLTPSG-----NFIYTGNTKGQLAKFDLRGG-------------KLLGCG--LKGITGSIRSIHCHPTH 302 (412)
T ss_pred eccccCcceeeeecCCC-----cEEEEecccchhheecccCc-------------eeeccc--cCCccCCcceEEEcCCC
Confidence 55567899999999999 89999999999999999976 322221 55778999999999998
Q ss_pred CCCCCcceEEEeeeCCCcEEEeEec
Q 037555 273 KPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 273 ~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.+|++||-|..|||+|++
T Consensus 303 -------~~las~GLDRyvRIhD~k 320 (412)
T KOG3881|consen 303 -------PVLASCGLDRYVRIHDIK 320 (412)
T ss_pred -------ceEEeeccceeEEEeecc
Confidence 899999999999999975
No 221
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.62 E-value=1.4e-13 Score=120.63 Aligned_cols=220 Identities=11% Similarity=0.191 Sum_probs=153.4
Q ss_pred ceEEeccCCCceEEEEEcCCC-CEEEeEeccCCCCceEEEEEEcCCce-------eeeccccccccEEEEEEcCCCCEEE
Q 037555 48 ESHKLYGHGNELFSLCCDHQG-KLVASSCKAQSTAAAEIWLWEVGSWK-------AMGRLQSHSLTVTQIRFSHDDNLLL 119 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~-~~l~~~~~~~~~~d~~i~vw~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~ 119 (298)
.+..+..|...|..++.++.. .++++|+ .||+|++|+..+.. ...++..-...+.++.+.+.++.+|
T Consensus 1040 lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS-----~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1040 LVAHLHEHSSAVIKLAVSSEHTSLFVSGS-----DDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred EeehhhhccccccceeecCCCCceEEEec-----CCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEE
Confidence 367778899999999988755 8999994 59999999986422 2222333467889999999999999
Q ss_pred EEeCCCeEEEEEeccCCCCccceeeeEEeecc-CCceEE-EEEcc-CCC-EEEEeeCCCeEEEEEccCCcceeeeeecCC
Q 037555 120 SVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH-KRIIWS-CSWNP-FGH-EFATGSRDKTVKIWAVENKSSVKQILALPP 195 (298)
Q Consensus 120 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~-~~~~~-~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 195 (298)
.++.||.|++.+++.................+ .+.+.. -+|.. .+. .++.+..-+.|..||++.......+. ...
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk-~~~ 1193 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLK-NQL 1193 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhh-cCc
Confidence 99999999999998632221112222222222 223333 34443 233 77888888999999999877666442 333
Q ss_pred CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCC
Q 037555 196 FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPK 275 (298)
Q Consensus 196 ~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 275 (298)
..+.|++++.+|.+ .+++.|+..|.+.+||++-. .++..+. + .+..+|..+..+|-.+
T Consensus 1194 ~hG~vTSi~idp~~-----~WlviGts~G~l~lWDLRF~-------------~~i~sw~-~-P~~~~i~~v~~~~~~~-- 1251 (1431)
T KOG1240|consen 1194 RHGLVTSIVIDPWC-----NWLVIGTSRGQLVLWDLRFR-------------VPILSWE-H-PARAPIRHVWLCPTYP-- 1251 (1431)
T ss_pred cccceeEEEecCCc-----eEEEEecCCceEEEEEeecC-------------ceeeccc-C-cccCCcceEEeeccCC--
Confidence 55789999999998 89999999999999999976 4444443 2 3457888888877542
Q ss_pred CCcceEEEeee--CCCcEEEeEec
Q 037555 276 NSRTMQLASCG--ADNTVRVFQVN 297 (298)
Q Consensus 276 ~~~~~~l~s~~--~d~~i~iw~~~ 297 (298)
.+...++++ ..+.|.+|++.
T Consensus 1252 --~~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1252 --QESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred --CCceEEEecccCCCceeeeecc
Confidence 113444443 56789999874
No 222
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=2.7e-13 Score=113.98 Aligned_cols=204 Identities=14% Similarity=0.127 Sum_probs=131.9
Q ss_pred ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEE-EEeCCC-
Q 037555 48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLL-SVSRDR- 125 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg- 125 (298)
..+.+..+...+.+.+|+|+|+.|+..+.. .....|++|++.+++... +..+........|+|||+.++ +.+.+|
T Consensus 195 ~~~~lt~~~~~v~~p~wSpDg~~la~~s~~--~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~ 271 (433)
T PRK04922 195 NPQTILRSAEPILSPAWSPDGKKLAYVSFE--RGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGN 271 (433)
T ss_pred CceEeecCCCccccccCCCCCCEEEEEecC--CCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCC
Confidence 345667778889999999999999988643 125689999998776533 333444556789999998765 455555
Q ss_pred -eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-CCe--EEEEEccCCcceeeeeecCCCCCceE
Q 037555 126 -QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-DKT--VKIWAVENKSSVKQILALPPFNSSVT 201 (298)
Q Consensus 126 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~~wd~~~~~~~~~~~~~~~~~~~v~ 201 (298)
.|.+||+..+. ...+..+.......+|+|+++.|+..+. +|. |.++|+.+++... + .. ......
T Consensus 272 ~~Iy~~d~~~g~--------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-l-t~--~g~~~~ 339 (433)
T PRK04922 272 PEIYVMDLGSRQ--------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-L-TF--QGNYNA 339 (433)
T ss_pred ceEEEEECCCCC--------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-e-ec--CCCCcc
Confidence 58888887532 2334445455567899999998887764 444 6666776654322 1 22 233445
Q ss_pred EEEEeeccccCCccEEEEeecC-C--cEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCc
Q 037555 202 ALSWVGLDRQKNHGFLAVGMES-G--VIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSR 278 (298)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~g~~d-g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 278 (298)
..+|+|++ ..|+..+.+ + .|.+||+.++. . ..+. +........|+||+
T Consensus 340 ~~~~SpDG-----~~Ia~~~~~~~~~~I~v~d~~~g~-------------~-~~Lt----~~~~~~~p~~spdG------ 390 (433)
T PRK04922 340 RASVSPDG-----KKIAMVHGSGGQYRIAVMDLSTGS-------------V-RTLT----PGSLDESPSFAPNG------ 390 (433)
T ss_pred CEEECCCC-----CEEEEEECCCCceeEEEEECCCCC-------------e-EECC----CCCCCCCceECCCC------
Confidence 78999998 566665433 2 68899987652 1 1221 12233457899999
Q ss_pred ceEEEeeeCC-C--cEEEeEe
Q 037555 279 TMQLASCGAD-N--TVRVFQV 296 (298)
Q Consensus 279 ~~~l~s~~~d-~--~i~iw~~ 296 (298)
++|+..+.+ + .|.++++
T Consensus 391 -~~i~~~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 391 -SMVLYATREGGRGVLAAVST 410 (433)
T ss_pred -CEEEEEEecCCceEEEEEEC
Confidence 666655542 3 3555544
No 223
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.61 E-value=9.1e-16 Score=121.04 Aligned_cols=191 Identities=12% Similarity=0.200 Sum_probs=155.3
Q ss_pred CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccC
Q 037555 56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRT 135 (298)
Q Consensus 56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 135 (298)
...|.++.|-.+.+++|++. ...++|||-. |..+..+..| ..|..+.|.|.--+|++++..|.++.-|+..
T Consensus 170 ~Etv~Dv~~LHneq~~AVAQ------K~y~yvYD~~-GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~- 240 (545)
T KOG1272|consen 170 METVRDVTFLHNEQFFAVAQ------KKYVYVYDNN-GTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVST- 240 (545)
T ss_pred hhhhhhhhhhcchHHHHhhh------hceEEEecCC-CcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeech-
Confidence 35688888888888999984 5789999965 7777777744 5689999999988999999999999999998
Q ss_pred CCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCcc
Q 037555 136 GTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHG 215 (298)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (298)
+..+..+..-.+.+..++-+|-+..+-+|...|+|.+|.....+++. .+..|.++|.++++.+.| .
T Consensus 241 ------GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLv---KiLcH~g~V~siAv~~~G-----~ 306 (545)
T KOG1272|consen 241 ------GKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLV---KILCHRGPVSSIAVDRGG-----R 306 (545)
T ss_pred ------hhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHH---HHHhcCCCcceEEECCCC-----c
Confidence 66677777777888899999988899999999999999998888777 666799999999999999 8
Q ss_pred EEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555 216 FLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ 295 (298)
Q Consensus 216 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~ 295 (298)
+++|.+.|..++|||+++.. .+..+. . ..+...+++|..+ |++++....|.||.
T Consensus 307 YMaTtG~Dr~~kIWDlR~~~-------------ql~t~~---t-p~~a~~ls~Sqkg---------lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 307 YMATTGLDRKVKIWDLRNFY-------------QLHTYR---T-PHPASNLSLSQKG---------LLALSYGDHVQIWK 360 (545)
T ss_pred EEeecccccceeEeeecccc-------------ccceee---c-CCCcccccccccc---------ceeeecCCeeeeeh
Confidence 99999999999999999863 222221 1 3456678888765 44455556788884
No 224
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=2.4e-14 Score=111.77 Aligned_cols=162 Identities=17% Similarity=0.231 Sum_probs=120.0
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcc
Q 037555 107 TQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSS 186 (298)
Q Consensus 107 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 186 (298)
..++|+.+|..+++++.||++|+|+... ...+.....|...|.++.|+||+.+|++.+.| ..+||+.+++..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-------~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~ 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-------MLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA 219 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc-------chhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch
Confidence 6799999999999999999999999765 45566777899999999999999999999999 899999999976
Q ss_pred eeeeeecCCCCCceEEEEEeeccccCCccEEEEe-ecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEE
Q 037555 187 VKQILALPPFNSSVTALSWVGLDRQKNHGFLAVG-MESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNR 265 (298)
Q Consensus 187 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 265 (298)
+..... ...+.....+.|..++.. ..-++++. ...+.|+.|++...... ... ...........|++
T Consensus 220 ~a~~t~-~~k~~~~~~cRF~~d~~~-~~l~laa~~~~~~~v~~~~~~~w~~~----------~~l-~~~~~~~~~~siSs 286 (398)
T KOG0771|consen 220 LARKTP-FSKDEMFSSCRFSVDNAQ-ETLRLAASQFPGGGVRLCDISLWSGS----------NFL-RLRKKIKRFKSISS 286 (398)
T ss_pred hhhcCC-cccchhhhhceecccCCC-ceEEEEEecCCCCceeEEEeeeeccc----------ccc-chhhhhhccCccee
Confidence 663322 224455677778776522 11233333 23467888887654321 001 11112223468999
Q ss_pred EEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 266 MAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 266 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
++.+++| ++++.|+.||.|-|++.
T Consensus 287 l~VS~dG-------kf~AlGT~dGsVai~~~ 310 (398)
T KOG0771|consen 287 LAVSDDG-------KFLALGTMDGSVAIYDA 310 (398)
T ss_pred EEEcCCC-------cEEEEeccCCcEEEEEe
Confidence 9999999 89999999999999875
No 225
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.60 E-value=1.4e-13 Score=102.94 Aligned_cols=201 Identities=16% Similarity=0.138 Sum_probs=142.1
Q ss_pred eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee--eeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccC
Q 037555 59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA--MGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRT 135 (298)
Q Consensus 59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~ 135 (298)
-.++.|++.+..++++ ..+|.+.+-+...... ++.++.|..++..+.|+. +.+++.+|+.|+.+..||++.+
T Consensus 124 ~lslD~~~~~~~i~vs-----~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p 198 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVS-----DSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIP 198 (339)
T ss_pred eeEEEeeccCceEEEE-----cCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCC
Confidence 4578889988888888 5578888555544433 347889999999999987 5579999999999999999954
Q ss_pred CCCccceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCc-ceeeeeecCCCCCceEEEEEeeccccCC
Q 037555 136 GTGEIDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKS-SVKQILALPPFNSSVTALSWVGLDRQKN 213 (298)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (298)
. .......+.|...|.++.-+| ...++++|+.|-.|++||.|+.. ++. .- ...+.|+.+.++|...
T Consensus 199 ~-----~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~---~~-~v~GGVWRi~~~p~~~--- 266 (339)
T KOG0280|consen 199 K-----TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF---KA-KVGGGVWRIKHHPEIF--- 266 (339)
T ss_pred c-----ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccc---cC-ccccceEEEEecchhh---
Confidence 3 122333566888999998887 57899999999999999999644 333 22 3458899999999763
Q ss_pred ccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeee-CCCcEE
Q 037555 214 HGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCG-ADNTVR 292 (298)
Q Consensus 214 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~ 292 (298)
..++.++.-.-.+|-+....... ....+.....|.+-...-.|.... .+|+||+ .|..++
T Consensus 267 -~~lL~~CMh~G~ki~~~~~~~~e-----------~~~~~~s~~~hdSl~YG~DWd~~~-------~~lATCsFYDk~~~ 327 (339)
T KOG0280|consen 267 -HRLLAACMHNGAKILDSSDKVLE-----------FQIVLPSDKIHDSLCYGGDWDSKD-------SFLATCSFYDKKIR 327 (339)
T ss_pred -hHHHHHHHhcCceEEEecccccc-----------hheeeeccccccceeecccccccc-------ceeeeeecccccee
Confidence 33344444444777777654221 111222355677777777785443 5899987 577755
Q ss_pred -EeE
Q 037555 293 -VFQ 295 (298)
Q Consensus 293 -iw~ 295 (298)
+|-
T Consensus 328 ~~Wl 331 (339)
T KOG0280|consen 328 QLWL 331 (339)
T ss_pred eeee
Confidence 673
No 226
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.58 E-value=3e-13 Score=103.23 Aligned_cols=206 Identities=20% Similarity=0.304 Sum_probs=148.3
Q ss_pred cccccccCCCCCceeeeccCCCccccccc------C---------CCCceEEeccCCCceEEEEEcCCCCEEEeEeccCC
Q 037555 15 DGLDTLESVPDAVPAVFTEPPIEDQLAWH------T---------LWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQS 79 (298)
Q Consensus 15 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~---------~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~ 79 (298)
..++.++||.+.|+....-| .++-+.+. + .||-+... -..+++++.++++...|+.|-
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~-~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~--mP~~~~~~~y~~e~~~L~vg~---- 87 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIP-KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHY--MPSPCSAMEYVSESRRLYVGQ---- 87 (404)
T ss_pred hhhhhhcCchhhhhhheecc-CCCCeEEccccceeeeEEeccccccCchhhhh--CCCCceEeeeeccceEEEEEE----
Confidence 35677889999888776663 33333332 2 33333222 356799999999999999994
Q ss_pred CCceEEEEEEcC----CceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCC-----------------
Q 037555 80 TAAAEIWLWEVG----SWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTG----------------- 138 (298)
Q Consensus 80 ~~d~~i~vw~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----------------- 138 (298)
..|++.-+.+. +....+....|...+..+-|+-...++++.+.|..+.---.+.+...
T Consensus 88 -~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~ 166 (404)
T KOG1409|consen 88 -DNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL 166 (404)
T ss_pred -ecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE
Confidence 47888877653 33445566779999999999887788888887755432222111100
Q ss_pred -----------------ccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceE
Q 037555 139 -----------------EIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVT 201 (298)
Q Consensus 139 -----------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~ 201 (298)
.....++..+.+|.+.+.+++|.|....|++|..|..+.+||+-..+... ..+.+|...|.
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~--~el~gh~~kV~ 244 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTA--YELQGHNDKVQ 244 (404)
T ss_pred EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCccee--eeeccchhhhh
Confidence 00134566778899999999999999999999999999999997665443 24567888898
Q ss_pred EEEEeeccccCCccEEEEeecCCcEEEEEeeecc
Q 037555 202 ALSWVGLDRQKNHGFLAVGMESGVIELWSISVNR 235 (298)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 235 (298)
.+...+.- ..++++++||.|-+|+++..+
T Consensus 245 ~l~~~~~t-----~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 245 ALSYAQHT-----RQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred hhhhhhhh-----eeeeeccCCCeEEEEecccee
Confidence 88888777 689999999999999997654
No 227
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.58 E-value=1.4e-13 Score=105.07 Aligned_cols=222 Identities=19% Similarity=0.276 Sum_probs=151.1
Q ss_pred CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce-----eeecccccc------------ccEEEEEEcCCCC-
Q 037555 55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK-----AMGRLQSHS------------LTVTQIRFSHDDN- 116 (298)
Q Consensus 55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~- 116 (298)
..+-|.++.|...|.+||+|. .+|.|.++.-.... ....++.|. ..|..+.|.++++
T Consensus 24 eadiis~vef~~~Ge~LatGd-----kgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~ 98 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGD-----KGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL 98 (433)
T ss_pred hhcceeeEEeecccceEeecC-----CCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCc
Confidence 345689999999999999994 48899988643221 233344443 4688999998654
Q ss_pred -EEEEEeCCCeEEEEEeccCCCCcc----------------------------ceeeeEE-eeccCCceEEEEEccCCCE
Q 037555 117 -LLLSVSRDRQFSVFAIQRTGTGEI----------------------------DYQLIAR-QEAHKRIIWSCSWNPFGHE 166 (298)
Q Consensus 117 -~l~~~~~dg~i~iwd~~~~~~~~~----------------------------~~~~~~~-~~~~~~~v~~~~~~~~~~~ 166 (298)
.++..+.|.+|++|.+........ ...+.+. -..|...|.++.++.|...
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et 178 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET 178 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence 678888999999999875432210 0001111 1257778999999999998
Q ss_pred EEEeeCCCeEEEEEccCCcceeeeeecCCCC-----CceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccC
Q 037555 167 FATGSRDKTVKIWAVENKSSVKQILALPPFN-----SSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVST 241 (298)
Q Consensus 167 l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 241 (298)
++++. |=+|.+|+++-......+..++++. ..|++..|+|... ++++-.+..|.|++-|++.........
T Consensus 179 ~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c----n~f~YSSSKGtIrLcDmR~~aLCd~hs 253 (433)
T KOG1354|consen 179 FLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC----NVFVYSSSKGTIRLCDMRQSALCDAHS 253 (433)
T ss_pred Eeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc----cEEEEecCCCcEEEeechhhhhhcchh
Confidence 88865 6789999998666555555555443 3589999999875 788888899999999999542211100
Q ss_pred ---CCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 242 ---PAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 242 ---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
..+.. ..-..+ +..--..|.++.|+++| +++++-+. -+|++||++
T Consensus 254 KlfEeped-p~~rsf--fseiIsSISDvKFs~sG-------ryilsRDy-ltvk~wD~n 301 (433)
T KOG1354|consen 254 KLFEEPED-PSSRSF--FSEIISSISDVKFSHSG-------RYILSRDY-LTVKLWDLN 301 (433)
T ss_pred hhhccccC-Ccchhh--HHHHhhhhhceEEccCC-------cEEEEecc-ceeEEEecc
Confidence 00000 000000 11223568899999999 89988764 589999985
No 228
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.58 E-value=2.9e-14 Score=117.70 Aligned_cols=203 Identities=17% Similarity=0.264 Sum_probs=119.1
Q ss_pred eeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCCceE--E-eccCCCceEEEEEcCCCCEEEeEeccC
Q 037555 8 TVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWPESH--K-LYGHGNELFSLCCDHQGKLVASSCKAQ 78 (298)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~~~--~-~~~h~~~v~~~~~s~~~~~l~~~~~~~ 78 (298)
.++...|..+.++++|.+-|++++++ .+++..+++ .+|.+.. . -..|.+.|.|+.|+|-...|++++-
T Consensus 37 iyD~ndG~llqtLKgHKDtVycVAys-~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsL-- 113 (1081)
T KOG1538|consen 37 VYDTSDGTLLQPLKGHKDTVYCVAYA-KDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSL-- 113 (1081)
T ss_pred EEeCCCcccccccccccceEEEEEEc-cCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcch--
Confidence 34555566666666666666666666 455555554 2443211 1 1246666666666666666666543
Q ss_pred CCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEE
Q 037555 79 STAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC 158 (298)
Q Consensus 79 ~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~ 158 (298)
...-+|.... +.+...+ ....|.+++|..||++++.|-.+|+|.+-+-.... ...+....+.+.+|+++
T Consensus 114 ----sdFglWS~~q-K~V~K~k-ss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEe-----k~~I~Rpgg~Nspiwsi 182 (1081)
T KOG1538|consen 114 ----SDFGLWSPEQ-KSVSKHK-SSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEE-----KVKIERPGGSNSPIWSI 182 (1081)
T ss_pred ----hhccccChhh-hhHHhhh-hheeEEEeeecCCCcEEEEeccCceEEeecCCCCc-----ceEEeCCCCCCCCceEE
Confidence 2233455432 2222222 34567888888899999999889988877533211 11122222344455555
Q ss_pred EEcc----------------------------------------------CCCEEEEeeCCCeEEEEEccCCcceeeeee
Q 037555 159 SWNP----------------------------------------------FGHEFATGSRDKTVKIWAVENKSSVKQILA 192 (298)
Q Consensus 159 ~~~~----------------------------------------------~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 192 (298)
+|+| +|.+++.|+.|+.+++|--+ +-.+. +
T Consensus 183 ~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLG---T 258 (1081)
T KOG1538|consen 183 CWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLG---T 258 (1081)
T ss_pred EecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec-CeEEe---e
Confidence 5544 44455555555555555322 22222 3
Q ss_pred cCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555 193 LPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 193 ~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 233 (298)
.-.....|++++..|++ ++++.|+.||+|.-|++-.
T Consensus 259 vg~~D~WIWtV~~~PNs-----Q~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 259 VGEQDSWIWTVQAKPNS-----QYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred ccccceeEEEEEEccCC-----ceEEEEEccCeeehhhhHH
Confidence 33456789999999999 8999999999999998753
No 229
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=4.8e-13 Score=103.71 Aligned_cols=158 Identities=16% Similarity=0.230 Sum_probs=126.1
Q ss_pred eEEEEEcCCCC-EEEeEeccCCCCc--eEEEEEEcCCceeeecccc---------ccccEEEEEEcCC--CCEEEEEeCC
Q 037555 59 LFSLCCDHQGK-LVASSCKAQSTAA--AEIWLWEVGSWKAMGRLQS---------HSLTVTQIRFSHD--DNLLLSVSRD 124 (298)
Q Consensus 59 v~~~~~s~~~~-~l~~~~~~~~~~d--~~i~vw~~~~~~~~~~~~~---------~~~~v~~~~~~~~--~~~l~~~~~d 124 (298)
+..+.-++..+ ++|+|++ . ..+++||++..+.+.+-.. -.-.++++.|-+. ...|++++.-
T Consensus 151 ~~~~r~~~~~p~Iva~GGk-----e~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~ 225 (412)
T KOG3881|consen 151 LYDVRQTDTDPYIVATGGK-----ENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRY 225 (412)
T ss_pred eeeeccCCCCCceEecCch-----hcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecc
Confidence 44444455444 4555754 4 7899999987754432211 1234678899886 7899999999
Q ss_pred CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEE
Q 037555 125 RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALS 204 (298)
Q Consensus 125 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~ 204 (298)
+.+++||.+.. .+++..+.....++.++...|+++++++|..-|.+..+|++.++.... .+.+..+.|+++.
T Consensus 226 hqvR~YDt~~q------RRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~--~~kg~tGsirsih 297 (412)
T KOG3881|consen 226 HQVRLYDTRHQ------RRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC--GLKGITGSIRSIH 297 (412)
T ss_pred eeEEEecCccc------CcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecc--ccCCccCCcceEE
Confidence 99999999864 456777777788999999999999999999999999999999887762 3677889999999
Q ss_pred EeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555 205 WVGLDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 205 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
.+|.. .++++++-|..|+|+|+.+.
T Consensus 298 ~hp~~-----~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 298 CHPTH-----PVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred EcCCC-----ceEEeeccceeEEEeecccc
Confidence 99988 69999999999999999885
No 230
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.54 E-value=2.5e-12 Score=108.21 Aligned_cols=166 Identities=16% Similarity=0.176 Sum_probs=113.1
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEE-EeCCC--
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLS-VSRDR-- 125 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg-- 125 (298)
.+.+..+...+...+|+|+|+.|+.+.... ....|++||+.+++... +..+...+.+++|+||++.|+. .+.++
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~--~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 258 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDGQKLAYVSFES--GKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNP 258 (417)
T ss_pred CEEeecCCCceecccCCCCCCEEEEEEcCC--CCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCc
Confidence 455666777899999999999999886431 24689999998875433 3335556677999999987664 44444
Q ss_pred eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC-C--eEEEEEccCCcceeeeeecCCCCCceEE
Q 037555 126 QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD-K--TVKIWAVENKSSVKQILALPPFNSSVTA 202 (298)
Q Consensus 126 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~~wd~~~~~~~~~~~~~~~~~~~v~~ 202 (298)
.|.+|++.... ...+..+........|+|+++.|+..+.. + .|.++|+.+++.. .+......+..
T Consensus 259 ~i~~~d~~~~~--------~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~----~l~~~~~~~~~ 326 (417)
T TIGR02800 259 DIYVMDLDGKQ--------LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR----RLTFRGGYNAS 326 (417)
T ss_pred cEEEEECCCCC--------EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE----EeecCCCCccC
Confidence 57778876522 22333344445567899999988776643 3 5778888765532 22223455678
Q ss_pred EEEeeccccCCccEEEEeecCC---cEEEEEeeec
Q 037555 203 LSWVGLDRQKNHGFLAVGMESG---VIELWSISVN 234 (298)
Q Consensus 203 ~~~~~~~~~~~~~~l~~g~~dg---~i~vwd~~~~ 234 (298)
..|+|++ .+++.+..++ .|.+||+.++
T Consensus 327 ~~~spdg-----~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 327 PSWSPDG-----DLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred eEECCCC-----CEEEEEEccCCceEEEEEeCCCC
Confidence 8999998 6777776654 6888887653
No 231
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.54 E-value=6.3e-13 Score=114.70 Aligned_cols=195 Identities=15% Similarity=0.195 Sum_probs=149.3
Q ss_pred ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccc----cEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555 58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSL----TVTQIRFSHDDNLLLSVSRDRQFSVFAIQ 133 (298)
Q Consensus 58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 133 (298)
.|....+.-+...++.+.. +..+.+||...+.....++.-.. ...-+-++++.-++++|+.-+.|.+|+..
T Consensus 89 wi~g~~l~~e~k~i~l~~~-----~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~ 163 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTS-----RNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH 163 (967)
T ss_pred cccccchhhhcceEEEEEc-----CceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecc
Confidence 3444455556667777743 78899999987776666553221 12223345666789999999999999987
Q ss_pred cCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCC
Q 037555 134 RTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKN 213 (298)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (298)
.. .. ...+.+|.+.|..+.++.+++++++.|.|.++|+|++.+.+... ...-+|...+..++|.|
T Consensus 164 ~d------n~-p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~------ 228 (967)
T KOG0974|consen 164 ED------NK-PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLP------ 228 (967)
T ss_pred cc------CC-cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEecc------
Confidence 32 11 22678999999999999999999999999999999999987665 23447999999999999
Q ss_pred ccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCccc-ceEEEEEeecCCCCCCCcceEEEeeeCCCcEE
Q 037555 214 HGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHV-AAVNRMAWKTHEKPKNSRTMQLASCGADNTVR 292 (298)
Q Consensus 214 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 292 (298)
..++++++|.+.++|+.... . +..+..|. ..|..++..++. ..++|++.|+.++
T Consensus 229 -n~i~t~gedctcrvW~~~~~--------------~---l~~y~~h~g~~iw~~~~~~~~-------~~~vT~g~Ds~lk 283 (967)
T KOG0974|consen 229 -NRIITVGEDCTCRVWGVNGT--------------Q---LEVYDEHSGKGIWKIAVPIGV-------IIKVTGGNDSTLK 283 (967)
T ss_pred -ceeEEeccceEEEEEecccc--------------e---ehhhhhhhhcceeEEEEcCCc-------eEEEeeccCcchh
Confidence 46999999999999965432 1 12345564 469999999988 8999999999999
Q ss_pred EeEec
Q 037555 293 VFQVN 297 (298)
Q Consensus 293 iw~~~ 297 (298)
+|++.
T Consensus 284 ~~~l~ 288 (967)
T KOG0974|consen 284 LWDLN 288 (967)
T ss_pred hhhhh
Confidence 99863
No 232
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.52 E-value=1.4e-12 Score=99.30 Aligned_cols=203 Identities=15% Similarity=0.225 Sum_probs=133.4
Q ss_pred EEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEE-EEeCCCeEEEEEeccCCCCc
Q 037555 61 SLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLL-SVSRDRQFSVFAIQRTGTGE 139 (298)
Q Consensus 61 ~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~ 139 (298)
-+.|||+|+++|+.+ +..+.|-|.++.+..+.+.. -..|.-+.|..|..+++ ....++.|.+|++..
T Consensus 13 ~c~fSp~g~yiAs~~------~yrlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Q----- 80 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS------RYRLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQ----- 80 (447)
T ss_pred ceeECCCCCeeeeee------eeEEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeec-----
Confidence 467999999999995 45888999998887776664 45677889998876554 557788999999987
Q ss_pred cceeeeEEeeccCCceEEEEEccCCCEEE-EeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEE
Q 037555 140 IDYQLIARQEAHKRIIWSCSWNPFGHEFA-TGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLA 218 (298)
Q Consensus 140 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~ 218 (298)
.+-...+.....++..++|+|+|+.++ +..-+-+|.+|.+.+.+... ++-.+..+..++|+|++ ++.+
T Consensus 81 --pew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~----~~~pK~~~kg~~f~~dg-----~f~a 149 (447)
T KOG4497|consen 81 --PEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL----LPHPKTNVKGYAFHPDG-----QFCA 149 (447)
T ss_pred --ceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE----ecccccCceeEEECCCC-----ceee
Confidence 344556666778899999999996555 55568899999998866542 33234556889999998 5666
Q ss_pred EeecCCcEEEE--------------EeeecccccccCCCCCCcceeeeec------cCCcc-cceEEEEEeecCCCCCCC
Q 037555 219 VGMESGVIELW--------------SISVNRTNDVSTPAPSTANIIIRFD------PFACH-VAAVNRMAWKTHEKPKNS 277 (298)
Q Consensus 219 ~g~~dg~i~vw--------------d~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~v~~~~~~~~~~~~~~ 277 (298)
..+.-.....+ ++.+.........+.+ ..+..+. .+.-| ...+..+.|+|-+
T Consensus 150 i~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg--~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~----- 222 (447)
T KOG4497|consen 150 ILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDG--NWLAVWDNVLEYKVYAYERGLGLKFVEWSPCN----- 222 (447)
T ss_pred eeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCC--cEEEEecchhhheeeeeeeccceeEEEecccc-----
Confidence 55432110000 1111000000000000 0000000 01112 3578889999988
Q ss_pred cceEEEeeeCCCcEEEeE
Q 037555 278 RTMQLASCGADNTVRVFQ 295 (298)
Q Consensus 278 ~~~~l~s~~~d~~i~iw~ 295 (298)
++|+.|+.|+.+|+-+
T Consensus 223 --qflavGsyD~~lrvln 238 (447)
T KOG4497|consen 223 --QFLAVGSYDQMLRVLN 238 (447)
T ss_pred --ceEEeeccchhhhhhc
Confidence 8999999999998743
No 233
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.4e-11 Score=103.88 Aligned_cols=166 Identities=13% Similarity=0.109 Sum_probs=109.1
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEE-EEeCCC--
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLL-SVSRDR-- 125 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg-- 125 (298)
.+.+..+...+....|+|+|+.|+..+.+. ....|.+|++.+++... +....+.+....|+|||+.|+ +.+.+|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~--~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~ 267 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQ--KRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNP 267 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCC--CCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCc
Confidence 455666778899999999999998876531 24579999998876533 332334456789999999776 455555
Q ss_pred eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-CC--eEEEEEccCCcceeeeeecCCCCCceEE
Q 037555 126 QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-DK--TVKIWAVENKSSVKQILALPPFNSSVTA 202 (298)
Q Consensus 126 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~~~~~v~~ 202 (298)
.|.++|+.... ...+..+........|+|+++.|+..+. +| .|.++|+.+++... + ... ......
T Consensus 268 ~Iy~~d~~~~~--------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-l-t~~--~~~~~~ 335 (430)
T PRK00178 268 EIYVMDLASRQ--------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-V-TFV--GNYNAR 335 (430)
T ss_pred eEEEEECCCCC--------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-e-ecC--CCCccc
Confidence 57777877532 2333444555667889999998877664 33 57777877665322 2 121 223345
Q ss_pred EEEeeccccCCccEEEEeec-CC--cEEEEEeeec
Q 037555 203 LSWVGLDRQKNHGFLAVGME-SG--VIELWSISVN 234 (298)
Q Consensus 203 ~~~~~~~~~~~~~~l~~g~~-dg--~i~vwd~~~~ 234 (298)
..|+|++ ..|+.... ++ .|.++|+.++
T Consensus 336 ~~~Spdg-----~~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 336 PRLSADG-----KTLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred eEECCCC-----CEEEEEEccCCceEEEEEECCCC
Confidence 7899998 56665543 33 5777887764
No 234
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=1e-11 Score=104.21 Aligned_cols=217 Identities=12% Similarity=0.064 Sum_probs=133.1
Q ss_pred cccccCCCCCceeeeccCCCccccccc-------CCC--C----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCce
Q 037555 17 LDTLESVPDAVPAVFTEPPIEDQLAWH-------TLW--P----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAA 83 (298)
Q Consensus 17 ~~~~~~~~~~v~~~~~~~~~~~~~~~~-------~~~--~----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~ 83 (298)
...+..+...+....++ |+++.++.. .+| + ....+....+.+....|+|||+.|+..... ....
T Consensus 191 ~~~lt~~~~~~~~p~wS-PDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~--~g~~ 267 (429)
T PRK03629 191 QFVVHRSPQPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSK--TGSL 267 (429)
T ss_pred CEEeecCCCceeeeEEc-CCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcC--CCCc
Confidence 33444455567777777 556655532 111 1 123333344455678999999988865321 1234
Q ss_pred EEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC-CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc
Q 037555 84 EIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR-DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP 162 (298)
Q Consensus 84 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 162 (298)
.|++||+.+++... +..+...+....|+|||+.|+..+. ++...+|.++... . ....+...........|+|
T Consensus 268 ~I~~~d~~tg~~~~-lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~-----g-~~~~lt~~~~~~~~~~~Sp 340 (429)
T PRK03629 268 NLYVMDLASGQIRQ-VTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNING-----G-APQRITWEGSQNQDADVSS 340 (429)
T ss_pred EEEEEECCCCCEEE-ccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCC-----C-CeEEeecCCCCccCEEECC
Confidence 69999998776544 3334556788999999998876665 4555666544321 1 1222333334456788999
Q ss_pred CCCEEEEeeCC---CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCc---EEEEEeeeccc
Q 037555 163 FGHEFATGSRD---KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGV---IELWSISVNRT 236 (298)
Q Consensus 163 ~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~---i~vwd~~~~~~ 236 (298)
++++|+..+.+ ..|.+||+.++... .+.. ........|+|++ ..|+.++.++. +.++++...
T Consensus 341 DG~~Ia~~~~~~g~~~I~~~dl~~g~~~----~Lt~-~~~~~~p~~SpDG-----~~i~~~s~~~~~~~l~~~~~~G~-- 408 (429)
T PRK03629 341 DGKFMVMVSSNGGQQHIAKQDLATGGVQ----VLTD-TFLDETPSIAPNG-----TMVIYSSSQGMGSVLNLVSTDGR-- 408 (429)
T ss_pred CCCEEEEEEccCCCceEEEEECCCCCeE----EeCC-CCCCCCceECCCC-----CEEEEEEcCCCceEEEEEECCCC--
Confidence 99998876643 35888999876543 2221 1223467899998 67777776654 556665432
Q ss_pred ccccCCCCCCcceeeeeccCCcccceEEEEEeec
Q 037555 237 NDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKT 270 (298)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 270 (298)
.... +.+|.+.+...+|+|
T Consensus 409 ------------~~~~---l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 409 ------------FKAR---LPATDGQVKFPAWSP 427 (429)
T ss_pred ------------CeEE---CccCCCCcCCcccCC
Confidence 2222 334777788888887
No 235
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.48 E-value=8.8e-12 Score=94.96 Aligned_cols=202 Identities=14% Similarity=0.218 Sum_probs=132.3
Q ss_pred eccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCC-------
Q 037555 52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD------- 124 (298)
Q Consensus 52 ~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------- 124 (298)
+.....++.++.|||+|+.+...+ .-+-.|.||.+.+.+... ++-....+..++|+|||++.+.+++-
T Consensus 87 Ideg~agls~~~WSPdgrhiL~ts----eF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~ 161 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDGRHILLTS----EFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQ 161 (447)
T ss_pred eccCCCcceeeeECCCcceEeeee----cceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecccHHHHHH
Confidence 345567899999999997776665 358899999998765543 23233456788899999887776642
Q ss_pred -----------------------------CeEEEEEeccCCCCccceeeeEEeecc-CCceEEEEEccCCCEEEEeeCCC
Q 037555 125 -----------------------------RQFSVFAIQRTGTGEIDYQLIARQEAH-KRIIWSCSWNPFGHEFATGSRDK 174 (298)
Q Consensus 125 -----------------------------g~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg 174 (298)
..+.+||---. . +.+..+ .-.+..++|+|.+++|++|+.|+
T Consensus 162 i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Le------y---kv~aYe~~lG~k~v~wsP~~qflavGsyD~ 232 (447)
T KOG4497|consen 162 ISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLE------Y---KVYAYERGLGLKFVEWSPCNQFLAVGSYDQ 232 (447)
T ss_pred HHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhh------h---eeeeeeeccceeEEEeccccceEEeeccch
Confidence 23444543210 1 111122 24688999999999999999999
Q ss_pred eEEEEEccCCccee---------------------------------------------------------eeee-----
Q 037555 175 TVKIWAVENKSSVK---------------------------------------------------------QILA----- 192 (298)
Q Consensus 175 ~i~~wd~~~~~~~~---------------------------------------------------------~~~~----- 192 (298)
.+|+.+--+-+... .+..
T Consensus 233 ~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~t 312 (447)
T KOG4497|consen 233 MLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPT 312 (447)
T ss_pred hhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCC
Confidence 99886543211100 0000
Q ss_pred -cCCCCCceEEEEEeeccccCCccEEEEeecC--CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEee
Q 037555 193 -LPPFNSSVTALSWVGLDRQKNHGFLAVGMES--GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWK 269 (298)
Q Consensus 193 -~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 269 (298)
++.....+--++|+++. .++++-.+. ..+.+||++.. +....+ ....+|....|.
T Consensus 313 D~pnPk~g~g~lafs~Ds-----~y~aTrnd~~PnalW~Wdlq~l-------------~l~avL----iQk~piraf~Wd 370 (447)
T KOG4497|consen 313 DFPNPKCGAGKLAFSCDS-----TYAATRNDKYPNALWLWDLQNL-------------KLHAVL----IQKHPIRAFEWD 370 (447)
T ss_pred CCCCcccccceeeecCCc-----eEEeeecCCCCceEEEEechhh-------------hhhhhh----hhccceeEEEeC
Confidence 01112235567888887 677776543 57999999865 222222 245789999999
Q ss_pred cCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 270 THEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 270 ~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
|.. ..|+.+.....+++|..
T Consensus 371 P~~-------prL~vctg~srLY~W~p 390 (447)
T KOG4497|consen 371 PGR-------PRLVVCTGKSRLYFWAP 390 (447)
T ss_pred CCC-------ceEEEEcCCceEEEEcC
Confidence 998 67777777778999864
No 236
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=2.9e-11 Score=101.14 Aligned_cols=209 Identities=13% Similarity=0.108 Sum_probs=121.5
Q ss_pred eEEeccCCCceEEEEEcCCCCEEE--eEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC-CC
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVA--SSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR-DR 125 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~--~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg 125 (298)
.+.+......+..-.|+|||+.++ ..+.. .....|.+.++.+++... +....+.....+|+|||+.|+..+. +|
T Consensus 177 ~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~--~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g 253 (428)
T PRK01029 177 LRPLTQEHSLSITPTWMHIGSGFPYLYVSYK--LGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYG 253 (428)
T ss_pred ceEcccCCCCcccceEccCCCceEEEEEEcc--CCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCC
Confidence 344555566778889999997532 23321 224679999998775433 3334445567899999988876553 23
Q ss_pred ----eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee-CCCeEEEE--EccC-CcceeeeeecCCCC
Q 037555 126 ----QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS-RDKTVKIW--AVEN-KSSVKQILALPPFN 197 (298)
Q Consensus 126 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~w--d~~~-~~~~~~~~~~~~~~ 197 (298)
.+.+|++..... .................+|+|+|+.|+..+ .+|...+| ++.. +.... .+....
T Consensus 254 ~~di~~~~~~~~~g~~----g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~---~lt~~~ 326 (428)
T PRK01029 254 NPDLFIQSFSLETGAI----GKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR---LLTKKY 326 (428)
T ss_pred CcceeEEEeecccCCC----CcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE---EeccCC
Confidence 344466554211 111111222223346789999999888766 46655555 4432 12222 233334
Q ss_pred CceEEEEEeeccccCCccEEEEeec-C--CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCC
Q 037555 198 SSVTALSWVGLDRQKNHGFLAVGME-S--GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKP 274 (298)
Q Consensus 198 ~~v~~~~~~~~~~~~~~~~l~~g~~-d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 274 (298)
..+....|+|++ +.|+.... + ..|.+||+.++. . ..+. .....+....|+||+
T Consensus 327 ~~~~~p~wSPDG-----~~Laf~~~~~g~~~I~v~dl~~g~-------------~-~~Lt---~~~~~~~~p~wSpDG-- 382 (428)
T PRK01029 327 RNSSCPAWSPDG-----KKIAFCSVIKGVRQICVYDLATGR-------------D-YQLT---TSPENKESPSWAIDS-- 382 (428)
T ss_pred CCccceeECCCC-----CEEEEEEcCCCCcEEEEEECCCCC-------------e-EEcc---CCCCCccceEECCCC--
Confidence 566788999999 56665543 2 368899987652 1 1221 122345678999998
Q ss_pred CCCcceEEE-eeeCC--CcEEEeEe
Q 037555 275 KNSRTMQLA-SCGAD--NTVRVFQV 296 (298)
Q Consensus 275 ~~~~~~~l~-s~~~d--~~i~iw~~ 296 (298)
+.|+ +...+ ..|.++|+
T Consensus 383 -----~~L~f~~~~~g~~~L~~vdl 402 (428)
T PRK01029 383 -----LHLVYSAGNSNESELYLISL 402 (428)
T ss_pred -----CEEEEEECCCCCceEEEEEC
Confidence 5555 44333 45666665
No 237
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.47 E-value=2.1e-11 Score=99.52 Aligned_cols=193 Identities=15% Similarity=0.150 Sum_probs=143.9
Q ss_pred CCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc---ccccEEEEEEc------C--------------CCCEEEEEe
Q 037555 66 HQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS---HSLTVTQIRFS------H--------------DDNLLLSVS 122 (298)
Q Consensus 66 ~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~---~~~~v~~~~~~------~--------------~~~~l~~~~ 122 (298)
|...++|.. ..||.+++|+...++....|.. -++..++..|. | +-..++-|.
T Consensus 3 ~~~~~~A~~-----~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt 77 (541)
T KOG4547|consen 3 PALDYFALS-----TGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT 77 (541)
T ss_pred chhheEeec-----CCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence 455677877 5699999999998877665542 23344444442 1 233677788
Q ss_pred CCCeEEEEEeccCCCCccceeeeEEe--eccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCce
Q 037555 123 RDRQFSVFAIQRTGTGEIDYQLIARQ--EAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSV 200 (298)
Q Consensus 123 ~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v 200 (298)
..|.|.+|++..+ +....+ ..|.+.|.++.++.+-..|.+++.|+.+..|+......++ ...+.+..+
T Consensus 78 ~~g~v~~ys~~~g-------~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~---~~~~~~~~~ 147 (541)
T KOG4547|consen 78 PQGSVLLYSVAGG-------EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIR---IWKEQKPLV 147 (541)
T ss_pred CCccEEEEEecCC-------eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeee---eeccCCCcc
Confidence 8999999998863 333333 4689999999999999999999999999999999887776 666677889
Q ss_pred EEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcce
Q 037555 201 TALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTM 280 (298)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 280 (298)
.+++.+|++ ..+++++ +.|++||+++. +.+.. +.+|.++|+++.|.-+- +...+..
T Consensus 148 ~sl~is~D~-----~~l~~as--~~ik~~~~~~k-------------evv~~---ftgh~s~v~t~~f~~~~-~g~~G~~ 203 (541)
T KOG4547|consen 148 SSLCISPDG-----KILLTAS--RQIKVLDIETK-------------EVVIT---FTGHGSPVRTLSFTTLI-DGIIGKY 203 (541)
T ss_pred ceEEEcCCC-----CEEEecc--ceEEEEEccCc-------------eEEEE---ecCCCcceEEEEEEEec-cccccce
Confidence 999999998 7888876 68999999887 44444 67899999999998771 0000115
Q ss_pred EEEeeeCCCcEEEeEec
Q 037555 281 QLASCGADNTVRVFQVN 297 (298)
Q Consensus 281 ~l~s~~~d~~i~iw~~~ 297 (298)
+|.+...+..+.+|-+.
T Consensus 204 vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 204 VLSSAAAERGITVWVVE 220 (541)
T ss_pred eeeccccccceeEEEEE
Confidence 66666677778888653
No 238
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.46 E-value=4.9e-13 Score=121.27 Aligned_cols=191 Identities=13% Similarity=0.216 Sum_probs=151.6
Q ss_pred eccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc-cccccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 037555 52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ-SHSLTVTQIRFSHDDNLLLSVSRDRQFSVF 130 (298)
Q Consensus 52 ~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 130 (298)
++.+-..|.++.-+|...+.++| +.||.|++|....++.+..++ .....|+.+.|+.+|+.+..+..||.+.+|
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltg-----s~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~ 2278 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTG-----SQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLW 2278 (2439)
T ss_pred eecccCceeeecCCCCCceEEec-----CCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeec
Confidence 34455678888889999999999 459999999998887776664 344889999999999999999999999999
Q ss_pred EeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee---CCCeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555 131 AIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS---RDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG 207 (298)
Q Consensus 131 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (298)
... .++....+.|+.....+.|-. ..+++++ .++.+.+||.--......+. ..|.+.++++++.|
T Consensus 2279 q~~--------pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P 2346 (2439)
T KOG1064|consen 2279 QAS--------PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAP 2346 (2439)
T ss_pred ccC--------CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcC
Confidence 987 345667788998888888874 5666664 46789999976544333222 67999999999999
Q ss_pred ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC
Q 037555 208 LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA 287 (298)
Q Consensus 208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~ 287 (298)
.. ++|++|+.+|.|++||++.. +..+.+ .. +. .. .++++++.
T Consensus 2347 ~~-----qllisggr~G~v~l~D~rqr-------------ql~h~~--------~~----~~-~~-------~~f~~~ss 2388 (2439)
T KOG1064|consen 2347 KH-----QLLISGGRKGEVCLFDIRQR-------------QLRHTF--------QA----LD-TR-------EYFVTGSS 2388 (2439)
T ss_pred cc-----eEEEecCCcCcEEEeehHHH-------------HHHHHh--------hh----hh-hh-------heeeccCc
Confidence 98 89999999999999999865 332222 21 33 33 69999999
Q ss_pred CCcEEEeEec
Q 037555 288 DNTVRVFQVN 297 (298)
Q Consensus 288 d~~i~iw~~~ 297 (298)
.|.++||+++
T Consensus 2389 ~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2389 EGNIKIWRLS 2398 (2439)
T ss_pred ccceEEEEcc
Confidence 9999999975
No 239
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=3.9e-11 Score=100.74 Aligned_cols=176 Identities=14% Similarity=0.097 Sum_probs=111.8
Q ss_pred ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCC---CeEEEEEeccCCCCccceeeeEEeeccCCceEEE
Q 037555 82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD---RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC 158 (298)
Q Consensus 82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~ 158 (298)
...|.++|.. +.....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+..+. . ..+....+.+...
T Consensus 175 ~~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~-------~-~~l~~~~g~~~~~ 245 (427)
T PRK02889 175 RYQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR-------R-RVVANFKGSNSAP 245 (427)
T ss_pred ccEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC-------E-EEeecCCCCccce
Confidence 4578888875 44444555677889999999999988877643 459999997632 1 2223334456688
Q ss_pred EEccCCCEEEE-eeCCCeEEEEEc--cCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee-cCCcEEEEEeeec
Q 037555 159 SWNPFGHEFAT-GSRDKTVKIWAV--ENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM-ESGVIELWSISVN 234 (298)
Q Consensus 159 ~~~~~~~~l~~-~~~dg~i~~wd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~-~dg~i~vwd~~~~ 234 (298)
.|+|+++.|+. .+.+|...+|.+ ..+. .. .+..+........|+|++ ..|+..+ .++...+|.+...
T Consensus 246 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG-----~~l~f~s~~~g~~~Iy~~~~~ 316 (427)
T PRK02889 246 AWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDG-----RSIYFTSDRGGAPQIYRMPAS 316 (427)
T ss_pred EECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCC-----CEEEEEecCCCCcEEEEEECC
Confidence 99999988864 567777666654 4333 23 343344556678999998 5555444 4567777776532
Q ss_pred ccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCC---cEEEeEec
Q 037555 235 RTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADN---TVRVFQVN 297 (298)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~---~i~iw~~~ 297 (298)
. .....+. + .........|+|++ ++|+..+.++ .|.+||+.
T Consensus 317 ~------------g~~~~lt-~--~g~~~~~~~~SpDG-------~~Ia~~s~~~g~~~I~v~d~~ 360 (427)
T PRK02889 317 G------------GAAQRVT-F--TGSYNTSPRISPDG-------KLLAYISRVGGAFKLYVQDLA 360 (427)
T ss_pred C------------CceEEEe-c--CCCCcCceEECCCC-------CEEEEEEccCCcEEEEEEECC
Confidence 1 1111111 1 11223457899999 7877666544 58888864
No 240
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.42 E-value=3.5e-11 Score=90.27 Aligned_cols=186 Identities=12% Similarity=0.112 Sum_probs=131.1
Q ss_pred CCceEEEEEcC---CCC-EEEeEeccCCCCceEEEEEEcCCceeeecccc------ccccEEEEEEcCCCCEEEEEeCCC
Q 037555 56 GNELFSLCCDH---QGK-LVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS------HSLTVTQIRFSHDDNLLLSVSRDR 125 (298)
Q Consensus 56 ~~~v~~~~~s~---~~~-~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg 125 (298)
+..+..+.|+. +|. .++-+ ...|.|.++..........+.+ ......++.|++.+..++++-.+|
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a-----~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G 143 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDA-----HARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRG 143 (339)
T ss_pred ccccceeeeeeccCCccceeeec-----cccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCC
Confidence 45567777753 444 33333 4588999998765443333322 112356788999999999999999
Q ss_pred eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEE
Q 037555 126 QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALS 204 (298)
Q Consensus 126 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~ 204 (298)
.+.+-+..... .+.++..+.|+-+.+...|+. +.+.+++|++|+.+..||+|..+. ........|...|.++.
T Consensus 144 ~~~~v~~t~~~-----le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~-~i~~n~kvH~~GV~SI~ 217 (339)
T KOG0280|consen 144 SISGVYETEMV-----LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT-FIWHNSKVHTSGVVSIY 217 (339)
T ss_pred cEEEEecceee-----eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-eeeecceeeecceEEEe
Confidence 99965554321 334458889999999999986 447899999999999999994432 22234556888999998
Q ss_pred EeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555 205 WVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE 272 (298)
Q Consensus 205 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 272 (298)
-+|..+ .+|++|+.|-.|++||.++-.. ++.. ....+.|+.+.++|..
T Consensus 218 ss~~~~----~~I~TGsYDe~i~~~DtRnm~k------------Pl~~----~~v~GGVWRi~~~p~~ 265 (339)
T KOG0280|consen 218 SSPPKP----TYIATGSYDECIRVLDTRNMGK------------PLFK----AKVGGGVWRIKHHPEI 265 (339)
T ss_pred cCCCCC----ceEEEeccccceeeeehhcccC------------cccc----CccccceEEEEecchh
Confidence 888654 7999999999999999996432 2211 1234788888888864
No 241
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=8.8e-11 Score=99.03 Aligned_cols=173 Identities=11% Similarity=0.076 Sum_probs=116.0
Q ss_pred ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC---CCeEEEEEeccCCCCccceeeeEEeeccCCceEEE
Q 037555 82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR---DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC 158 (298)
Q Consensus 82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~ 158 (298)
...|.++|.+ +.....+..|...+...+|+|||+.|+..+. +..|.+||+..+. ...+..+.+.+...
T Consensus 181 ~~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~--------~~~l~~~~g~~~~~ 251 (435)
T PRK05137 181 IKRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ--------RELVGNFPGMTFAP 251 (435)
T ss_pred ceEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc--------EEEeecCCCcccCc
Confidence 3589999986 4444556678889999999999998887653 4689999997632 22334455667789
Q ss_pred EEccCCCEEE-EeeCCCe--EEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee-cCC--cEEEEEee
Q 037555 159 SWNPFGHEFA-TGSRDKT--VKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM-ESG--VIELWSIS 232 (298)
Q Consensus 159 ~~~~~~~~l~-~~~~dg~--i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~-~dg--~i~vwd~~ 232 (298)
.|+|+++.|+ +.+.++. |.+||+.++... .+..+........|+|++ ..|+..+ .+| .|+++|+.
T Consensus 252 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG-----~~i~f~s~~~g~~~Iy~~d~~ 322 (435)
T PRK05137 252 RFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDG-----SQIVFESDRSGSPQLYVMNAD 322 (435)
T ss_pred EECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCC-----CEEEEEECCCCCCeEEEEECC
Confidence 9999998775 4455554 777788876543 344455566789999998 5666555 334 57777765
Q ss_pred ecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCC---CcEEEeEe
Q 037555 233 VNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD---NTVRVFQV 296 (298)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d---~~i~iw~~ 296 (298)
.+ ....+. .+...+....|+|++ ..|+..+.+ ..|.+||+
T Consensus 323 g~--------------~~~~lt---~~~~~~~~~~~SpdG-------~~ia~~~~~~~~~~i~~~d~ 365 (435)
T PRK05137 323 GS--------------NPRRIS---FGGGRYSTPVWSPRG-------DLIAFTKQGGGQFSIGVMKP 365 (435)
T ss_pred CC--------------CeEEee---cCCCcccCeEECCCC-------CEEEEEEcCCCceEEEEEEC
Confidence 43 112222 123445678899999 677665543 24666664
No 242
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=5.3e-11 Score=100.27 Aligned_cols=174 Identities=15% Similarity=0.091 Sum_probs=112.1
Q ss_pred ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC---CCeEEEEEeccCCCCccceeeeEEeeccCCceEEE
Q 037555 82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR---DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC 158 (298)
Q Consensus 82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~ 158 (298)
...|.+||.. +.....+..+...+.+.+|+|||+.|+..+. +..|.+||+..+. ...+....+....+
T Consensus 183 ~~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~--------~~~l~~~~g~~~~~ 253 (433)
T PRK04922 183 RYALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ--------RELVASFRGINGAP 253 (433)
T ss_pred eEEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC--------EEEeccCCCCccCc
Confidence 4579999986 4444456667778999999999998888764 3469999987532 12222334445678
Q ss_pred EEccCCCEEE-EeeCCC--eEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee-cCCc--EEEEEee
Q 037555 159 SWNPFGHEFA-TGSRDK--TVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM-ESGV--IELWSIS 232 (298)
Q Consensus 159 ~~~~~~~~l~-~~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~-~dg~--i~vwd~~ 232 (298)
.|+|+++.|+ +.+.+| .|++||+.+++.. .+..+.......+|+|++ ..|+..+ .+|. |+++++.
T Consensus 254 ~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG-----~~l~f~sd~~g~~~iy~~dl~ 324 (433)
T PRK04922 254 SFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDG-----KSIYFTSDRGGRPQIYRVAAS 324 (433)
T ss_pred eECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCC-----CEEEEEECCCCCceEEEEECC
Confidence 9999998775 445555 5999999876543 333344455678999998 5666555 4555 5555554
Q ss_pred ecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCC-C--cEEEeEec
Q 037555 233 VNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD-N--TVRVFQVN 297 (298)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d-~--~i~iw~~~ 297 (298)
++ . ...+. . +......++|+|++ .+|+..+.+ + .|.+||+.
T Consensus 325 ~g-------------~-~~~lt-~--~g~~~~~~~~SpDG-------~~Ia~~~~~~~~~~I~v~d~~ 368 (433)
T PRK04922 325 GG-------------S-AERLT-F--QGNYNARASVSPDG-------KKIAMVHGSGGQYRIAVMDLS 368 (433)
T ss_pred CC-------------C-eEEee-c--CCCCccCEEECCCC-------CEEEEEECCCCceeEEEEECC
Confidence 43 1 11221 1 22234468999999 677665433 2 58888863
No 243
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.41 E-value=8.9e-12 Score=94.34 Aligned_cols=223 Identities=17% Similarity=0.232 Sum_probs=148.7
Q ss_pred CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce-----eeecccccc------------ccEEEEEEcCCC--
Q 037555 55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK-----AMGRLQSHS------------LTVTQIRFSHDD-- 115 (298)
Q Consensus 55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~-- 115 (298)
..+.|+++.|...|.+|++| +..|.|.++.-+... ....|++|. ..|..+.|..++
T Consensus 25 ead~ItaVefd~tg~YlatG-----DkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r 99 (460)
T COG5170 25 EADKITAVEFDETGLYLATG-----DKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGR 99 (460)
T ss_pred ccceeeEEEeccccceEeec-----CCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCc
Confidence 34679999999999999999 446999999765322 223356554 457888887644
Q ss_pred CEEEEEeCCCeEEEEEeccCCCC-----------------cc-------------ce-----eeeE-EeeccCCceEEEE
Q 037555 116 NLLLSVSRDRQFSVFAIQRTGTG-----------------EI-------------DY-----QLIA-RQEAHKRIIWSCS 159 (298)
Q Consensus 116 ~~l~~~~~dg~i~iwd~~~~~~~-----------------~~-------------~~-----~~~~-~~~~~~~~v~~~~ 159 (298)
+.++..+.|.+|++|.+...... +. .. .+.+ ....|...|.++.
T Consensus 100 ~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS 179 (460)
T COG5170 100 NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSIS 179 (460)
T ss_pred ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeee
Confidence 46788888999999998654100 00 00 0111 1135777789999
Q ss_pred EccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCC-----CceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555 160 WNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFN-----SSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 160 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
|+.+...++++. |-+|.+|++.-......+..+++|. ..|++..|+|... ..+.-.+..|.|++-|++..
T Consensus 180 ~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c----n~fmYSsSkG~Ikl~DlRq~ 254 (460)
T COG5170 180 FNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC----NVFMYSSSKGEIKLNDLRQS 254 (460)
T ss_pred ecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc----ceEEEecCCCcEEehhhhhh
Confidence 998888887765 6789999998766656555666554 3489999999875 67777788999999999854
Q ss_pred ccccccC--CCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 235 RTNDVST--PAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 235 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
....... ........-.. -+.+-...|..+.|++++ +++++-+. -+|+|||++
T Consensus 255 alcdn~~klfe~~~D~v~~~--ff~eivsSISD~kFs~ng-------ryIlsRdy-ltvkiwDvn 309 (460)
T COG5170 255 ALCDNSKKLFELTIDGVDVD--FFEEIVSSISDFKFSDNG-------RYILSRDY-LTVKIWDVN 309 (460)
T ss_pred hhccCchhhhhhccCcccch--hHHHHhhhhcceEEcCCC-------cEEEEecc-ceEEEEecc
Confidence 2211000 00000000000 022234678899999999 78887765 589999986
No 244
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=2.8e-10 Score=96.02 Aligned_cols=165 Identities=18% Similarity=0.161 Sum_probs=102.9
Q ss_pred EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEE-EeCCCe--
Q 037555 50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLS-VSRDRQ-- 126 (298)
Q Consensus 50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~-- 126 (298)
+.+..+...+.+..|+|||+.|+..+.+ .....|++||+.+++... +..........+|+|||+.|+. .+.+|.
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~--~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~ 287 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFE--NRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPE 287 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEec--CCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeE
Confidence 3444556678899999999999887642 124579999998776432 2222233457899999997764 566675
Q ss_pred EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-CC--eEEEEEccCCcceeeeeecCCCCCceEEE
Q 037555 127 FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-DK--TVKIWAVENKSSVKQILALPPFNSSVTAL 203 (298)
Q Consensus 127 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~~~~~v~~~ 203 (298)
|.++|+.... ...+..+........|+|+++.|+..+. ++ .|.++|+.+++... + +.. .......
T Consensus 288 Iy~~dl~tg~--------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-L-t~~--g~~~~~~ 355 (448)
T PRK04792 288 IYVVDIATKA--------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-L-TFE--GEQNLGG 355 (448)
T ss_pred EEEEECCCCC--------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-E-ecC--CCCCcCe
Confidence 6666665421 2333444455677899999998877654 33 46667777665432 2 222 2223457
Q ss_pred EEeeccccCCccEEEEee-cCCc--EEEEEeeec
Q 037555 204 SWVGLDRQKNHGFLAVGM-ESGV--IELWSISVN 234 (298)
Q Consensus 204 ~~~~~~~~~~~~~l~~g~-~dg~--i~vwd~~~~ 234 (298)
+|+|++ .+|+..+ .++. |.++|+.++
T Consensus 356 ~~SpDG-----~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 356 SITPDG-----RSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred eECCCC-----CEEEEEEecCCceEEEEEECCCC
Confidence 899998 5555544 3454 444555543
No 245
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.40 E-value=3e-10 Score=92.81 Aligned_cols=182 Identities=15% Similarity=0.120 Sum_probs=119.7
Q ss_pred CceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEE
Q 037555 81 AAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW 160 (298)
Q Consensus 81 ~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 160 (298)
.++.|.+.|..+.+.+..+......-..+.|+|||+++++++.||.|.++|+.+ .+.+..+.. ......+++
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~-------~~~v~~i~~-G~~~~~i~~ 85 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLAT-------GKVVATIKV-GGNPRGIAV 85 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTS-------SSEEEEEE--SSEEEEEEE
T ss_pred CCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCc-------ccEEEEEec-CCCcceEEE
Confidence 489999999999999998875544445678999999999999999999999998 556666664 345688999
Q ss_pred ccCCCEEEEee-CCCeEEEEEccCCcceeeeeecC----CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecc
Q 037555 161 NPFGHEFATGS-RDKTVKIWAVENKSSVKQILALP----PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNR 235 (298)
Q Consensus 161 ~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 235 (298)
+++|++++++. .++.+.++|.++.+.+..+.... .....+..+..+|..+ .++++--+.+.|.+.|+....
T Consensus 86 s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~----~fVv~lkd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 86 SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP----EFVVNLKDTGEIWVVDYSDPK 161 (369)
T ss_dssp --TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS----EEEEEETTTTEEEEEETTTSS
T ss_pred cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCC----EEEEEEccCCeEEEEEecccc
Confidence 99999998775 58999999999988887543221 1234577787788773 466666666888888876542
Q ss_pred cccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEe-eeCCCcEEEeEe
Q 037555 236 TNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLAS-CGADNTVRVFQV 296 (298)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s-~~~d~~i~iw~~ 296 (298)
. .....+. .........|+|++ ++++. .-.++.|-++|.
T Consensus 162 ~-----------~~~~~i~----~g~~~~D~~~dpdg-------ry~~va~~~sn~i~viD~ 201 (369)
T PF02239_consen 162 N-----------LKVTTIK----VGRFPHDGGFDPDG-------RYFLVAANGSNKIAVIDT 201 (369)
T ss_dssp C-----------EEEEEEE------TTEEEEEE-TTS-------SEEEEEEGGGTEEEEEET
T ss_pred c-----------cceeeec----ccccccccccCccc-------ceeeecccccceeEEEee
Confidence 1 1112221 23455678999998 55544 445667777765
No 246
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.40 E-value=1.8e-11 Score=93.72 Aligned_cols=214 Identities=16% Similarity=0.239 Sum_probs=154.0
Q ss_pred ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEc-CCceeeecc-ccccccEEEEEEcCCCCEEEEEeCCC
Q 037555 48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEV-GSWKAMGRL-QSHSLTVTQIRFSHDDNLLLSVSRDR 125 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~-~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg 125 (298)
..+.+.||.+.|++...-|...-+++. ++|.+++||-- +.++.-..+ .....+++++.+.++...|+.+-..|
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~gv~~~-----s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ng 90 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEEGVISV-----SEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNG 90 (404)
T ss_pred hhhhhcCchhhhhhheeccCCCCeEEc-----cccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecc
Confidence 467788999999999998888889998 46999999954 344443332 23567899999999999999999999
Q ss_pred eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEE----------------------------
Q 037555 126 QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVK---------------------------- 177 (298)
Q Consensus 126 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~---------------------------- 177 (298)
++.-+.+...-.. ....+....|...+..+-|+.....+++.+.|..+.
T Consensus 91 tvtefs~sedfnk---m~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~ 167 (404)
T KOG1409|consen 91 TVTEFALSEDFNK---MTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALY 167 (404)
T ss_pred eEEEEEhhhhhhh---cchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEE
Confidence 9988876532111 233444556667777776665555555555543322
Q ss_pred -----------EEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCC
Q 037555 178 -----------IWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPST 246 (298)
Q Consensus 178 -----------~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 246 (298)
+..+... ....+.++.+|...+++++|.|.. .+|++|..|..+.+||+--.+
T Consensus 168 ~fvGd~~gqvt~lr~~~~-~~~~i~~~~~h~~~~~~l~Wd~~~-----~~LfSg~~d~~vi~wdigg~~----------- 230 (404)
T KOG1409|consen 168 AFVGDHSGQITMLKLEQN-GCQLITTFNGHTGEVTCLKWDPGQ-----RLLFSGASDHSVIMWDIGGRK----------- 230 (404)
T ss_pred EEecccccceEEEEEeec-CCceEEEEcCcccceEEEEEcCCC-----cEEEeccccCceEEEeccCCc-----------
Confidence 2211111 122344667889999999999988 799999999999999996542
Q ss_pred cceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 247 ANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 247 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.... ++.+|...|..+...+.- ..|.+++.||.|.+|+++
T Consensus 231 -g~~~---el~gh~~kV~~l~~~~~t-------~~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 231 -GTAY---ELQGHNDKVQALSYAQHT-------RQLISCGEDGGIVVWNMN 270 (404)
T ss_pred -ceee---eeccchhhhhhhhhhhhh-------eeeeeccCCCeEEEEecc
Confidence 1111 255788999988888777 899999999999999986
No 247
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.40 E-value=3.6e-09 Score=86.43 Aligned_cols=212 Identities=14% Similarity=0.164 Sum_probs=133.2
Q ss_pred CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC-ceeeec---cc----------cccccEEEEEEcCCCCEEEE
Q 037555 55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS-WKAMGR---LQ----------SHSLTVTQIRFSHDDNLLLS 120 (298)
Q Consensus 55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~-~~~~~~---~~----------~~~~~v~~~~~~~~~~~l~~ 120 (298)
.......++++|++++|+++.. .++.|.++++.. +..... +. .-.....++.|+|+++++++
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany----~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANY----GGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEET----TTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred CCCCcEEEEEecCCCEEEEEEc----cCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 3455678999999999999974 488999999976 332221 11 12345789999999998887
Q ss_pred EeC-CCeEEEEEeccCCCCccceeeeEEe-eccCCceEEEEEccCCCEEEEee-CCCeEEEEEcc--CCc--ceeeeeec
Q 037555 121 VSR-DRQFSVFAIQRTGTGEIDYQLIARQ-EAHKRIIWSCSWNPFGHEFATGS-RDKTVKIWAVE--NKS--SVKQILAL 193 (298)
Q Consensus 121 ~~~-dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~--~~~--~~~~~~~~ 193 (298)
... ...|.+|++...... ......+ ......-+.+.|+|+++++++.. .++.|.++++. .+. ....+..+
T Consensus 161 ~dlG~D~v~~~~~~~~~~~---l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~ 237 (345)
T PF10282_consen 161 PDLGADRVYVYDIDDDTGK---LTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTL 237 (345)
T ss_dssp EETTTTEEEEEEE-TTS-T---EEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESC
T ss_pred EecCCCEEEEEEEeCCCce---EEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeec
Confidence 643 457999999764321 1111222 23345678999999998887665 57889999998 221 22222222
Q ss_pred CC---CCCceEEEEEeeccccCCccEEEEee-cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEee
Q 037555 194 PP---FNSSVTALSWVGLDRQKNHGFLAVGM-ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWK 269 (298)
Q Consensus 194 ~~---~~~~v~~~~~~~~~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 269 (298)
.. .......++++|++ ++|.++. ....|.+|++.... ..+..+............+.++
T Consensus 238 ~~~~~~~~~~~~i~ispdg-----~~lyvsnr~~~sI~vf~~d~~~------------g~l~~~~~~~~~G~~Pr~~~~s 300 (345)
T PF10282_consen 238 PEGFTGENAPAEIAISPDG-----RFLYVSNRGSNSISVFDLDPAT------------GTLTLVQTVPTGGKFPRHFAFS 300 (345)
T ss_dssp ETTSCSSSSEEEEEE-TTS-----SEEEEEECTTTEEEEEEECTTT------------TTEEEEEEEEESSSSEEEEEE-
T ss_pred cccccccCCceeEEEecCC-----CEEEEEeccCCEEEEEEEecCC------------CceEEEEEEeCCCCCccEEEEe
Confidence 11 11257889999999 5666555 56789999995321 1122222122234457899999
Q ss_pred cCCCCCCCcceEEEeee-CCCcEEEeEec
Q 037555 270 THEKPKNSRTMQLASCG-ADNTVRVFQVN 297 (298)
Q Consensus 270 ~~~~~~~~~~~~l~s~~-~d~~i~iw~~~ 297 (298)
|++ ++|+++. .++.|.+|+++
T Consensus 301 ~~g-------~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 301 PDG-------RYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp TTS-------SEEEEEETTTTEEEEEEEE
T ss_pred CCC-------CEEEEEecCCCeEEEEEEe
Confidence 999 6666555 67789999874
No 248
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.39 E-value=7.5e-12 Score=108.25 Aligned_cols=149 Identities=20% Similarity=0.309 Sum_probs=120.0
Q ss_pred EcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcccee
Q 037555 64 CDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQ 143 (298)
Q Consensus 64 ~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 143 (298)
++++.-++++| ..-+.|.+|+....+....+.+|.+.|..+.|+.||.++++.|.|.++++|++++.+.
T Consensus 141 ~s~~~~~i~~g-----sv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~------ 209 (967)
T KOG0974|consen 141 DSAEELYIASG-----SVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREV------ 209 (967)
T ss_pred ccCcEEEEEec-----cccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccc------
Confidence 35555577777 4588999999874333335889999999999999999999999999999999998532
Q ss_pred eeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCC-CceEEEEEeeccccCCccEEEEeec
Q 037555 144 LIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFN-SSVTALSWVGLDRQKNHGFLAVGME 222 (298)
Q Consensus 144 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~l~~g~~ 222 (298)
......+|...|+.++|.|. ++++++.|.+.++|+.... .+. .+..|. ..+..++..+.. ..+++++.
T Consensus 210 ~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~-~l~---~y~~h~g~~iw~~~~~~~~-----~~~vT~g~ 278 (967)
T KOG0974|consen 210 LGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGT-QLE---VYDEHSGKGIWKIAVPIGV-----IIKVTGGN 278 (967)
T ss_pred cCcccccccceeEEEEeccc--eeEEeccceEEEEEecccc-eeh---hhhhhhhcceeEEEEcCCc-----eEEEeecc
Confidence 12356789999999999987 9999999999999976543 333 444454 568999998887 68999999
Q ss_pred CCcEEEEEeeec
Q 037555 223 SGVIELWSISVN 234 (298)
Q Consensus 223 dg~i~vwd~~~~ 234 (298)
|+.+++|++...
T Consensus 279 Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 279 DSTLKLWDLNGR 290 (967)
T ss_pred Ccchhhhhhhcc
Confidence 999999998754
No 249
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.36 E-value=2.3e-09 Score=87.64 Aligned_cols=147 Identities=9% Similarity=0.072 Sum_probs=92.5
Q ss_pred ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe-CCCe
Q 037555 48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS-RDRQ 126 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~ 126 (298)
.+.++......-..+.|+|||+++++++. |+.|.++|+.+++.+.+++... ...++++++||++++++. ..+.
T Consensus 28 ~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r-----dg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~ 101 (369)
T PF02239_consen 28 VVARIPTGGAPHAGLKFSPDGRYLYVANR-----DGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGT 101 (369)
T ss_dssp EEEEEE-STTEEEEEE-TT-SSEEEEEET-----TSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTE
T ss_pred EEEEEcCCCCceeEEEecCCCCEEEEEcC-----CCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCc
Confidence 45556544444455789999999999854 8999999999999998887544 468899999999888775 5899
Q ss_pred EEEEEeccCCCCccceeeeEEeecc-------CCceEEEEEccCCCEEEEeeC-CCeEEEEEccCCcceeeeeecCCCCC
Q 037555 127 FSVFAIQRTGTGEIDYQLIARQEAH-------KRIIWSCSWNPFGHEFATGSR-DKTVKIWAVENKSSVKQILALPPFNS 198 (298)
Q Consensus 127 i~iwd~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~ 198 (298)
+.++|.++ .++++.+... ...+..+..+|....++..-. .+.|.+.|....+.+.. ..+. ...
T Consensus 102 v~v~D~~t-------le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~-~~i~-~g~ 172 (369)
T PF02239_consen 102 VSVIDAET-------LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV-TTIK-VGR 172 (369)
T ss_dssp EEEEETTT---------EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE-EEEE---T
T ss_pred eeEecccc-------ccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce-eeec-ccc
Confidence 99999887 5555554432 235677777887775555544 47788878766543321 1221 334
Q ss_pred ceEEEEEeecc
Q 037555 199 SVTALSWVGLD 209 (298)
Q Consensus 199 ~v~~~~~~~~~ 209 (298)
......|+|++
T Consensus 173 ~~~D~~~dpdg 183 (369)
T PF02239_consen 173 FPHDGGFDPDG 183 (369)
T ss_dssp TEEEEEE-TTS
T ss_pred cccccccCccc
Confidence 45566777766
No 250
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.33 E-value=1.9e-08 Score=82.22 Aligned_cols=218 Identities=12% Similarity=0.165 Sum_probs=135.6
Q ss_pred CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCc--e--eeeccccccccEEEEEEcCCCCEEEEEeC-CCeEEE
Q 037555 55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSW--K--AMGRLQSHSLTVTQIRFSHDDNLLLSVSR-DRQFSV 129 (298)
Q Consensus 55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i 129 (298)
-.....-++++|++++|.++.... ..++.|..|.+... + .+............++++|++++|+++.. +|.+.+
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~-~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v 113 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGS-GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSV 113 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTS-STTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCCCceEEEEeCCCEEEEEEccc-cCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEE
Confidence 344567788999999999997521 14789999988653 2 33333323445567999999999988874 899999
Q ss_pred EEeccCCCCccceeeeEEee----------ccCCceEEEEEccCCCEEEEeeC-CCeEEEEEccCCcc-eeeeeec-CCC
Q 037555 130 FAIQRTGTGEIDYQLIARQE----------AHKRIIWSCSWNPFGHEFATGSR-DKTVKIWAVENKSS-VKQILAL-PPF 196 (298)
Q Consensus 130 wd~~~~~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~-~~~~~~~-~~~ 196 (298)
+++...... ........ .......++.++|+++++++... ...|.+|++..... +.....+ ...
T Consensus 114 ~~l~~~g~l---~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~ 190 (345)
T PF10282_consen 114 FPLDDDGSL---GEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP 190 (345)
T ss_dssp EEECTTSEE---EEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST
T ss_pred EEccCCccc---ceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc
Confidence 999874221 11111111 11245788999999998888753 45799999976552 2211111 134
Q ss_pred CCceEEEEEeeccccCCccEEEE-eecCCcEEEEEeeecccccccCCCCCCcceeeeeccCC---cccceEEEEEeecCC
Q 037555 197 NSSVTALSWVGLDRQKNHGFLAV-GMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFA---CHVAAVNRMAWKTHE 272 (298)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~l~~-g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~ 272 (298)
....+.++|+|++ .++.+ .-.++.|.++++....-. ...+..+..+. ........|+++||+
T Consensus 191 G~GPRh~~f~pdg-----~~~Yv~~e~s~~v~v~~~~~~~g~---------~~~~~~~~~~~~~~~~~~~~~~i~ispdg 256 (345)
T PF10282_consen 191 GSGPRHLAFSPDG-----KYAYVVNELSNTVSVFDYDPSDGS---------LTEIQTISTLPEGFTGENAPAEIAISPDG 256 (345)
T ss_dssp TSSEEEEEE-TTS-----SEEEEEETTTTEEEEEEEETTTTE---------EEEEEEEESCETTSCSSSSEEEEEE-TTS
T ss_pred CCCCcEEEEcCCc-----CEEEEecCCCCcEEEEeecccCCc---------eeEEEEeeeccccccccCCceeEEEecCC
Confidence 5678999999998 45544 445788999999822110 02222222221 112267889999999
Q ss_pred CCCCCcceEEEeeeCCCcEEEeEe
Q 037555 273 KPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 273 ~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
+ .++++...++.|.+|++
T Consensus 257 ~------~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 257 R------FLYVSNRGSNSISVFDL 274 (345)
T ss_dssp S------EEEEEECTTTEEEEEEE
T ss_pred C------EEEEEeccCCEEEEEEE
Confidence 3 44555557788999987
No 251
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.33 E-value=7e-12 Score=114.03 Aligned_cols=146 Identities=16% Similarity=0.305 Sum_probs=120.5
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe---CCCeEEEEEec
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS---RDRQFSVFAIQ 133 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~ 133 (298)
..|+.+.|+.+|..+.++ ..||.+.+|.+. .++....++|....++++|-. ..+++++ .++.+.+||..
T Consensus 2252 s~vtr~~f~~qGnk~~i~-----d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl 2323 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIV-----DGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTL 2323 (2439)
T ss_pred chhhhhhhcccCCceeee-----ccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcc
Confidence 789999999999999888 669999999987 677777889999999999975 5666654 47899999977
Q ss_pred cCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCC
Q 037555 134 RTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKN 213 (298)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (298)
.+.. ...+. ..|.+.++++++.|..+.|++|+.+|.|++||++..+... .++. ++ ..
T Consensus 2324 ~~~~----~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h---~~~~---------~~-~~---- 2380 (2439)
T KOG1064|consen 2324 LPPM----NSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRH---TFQA---------LD-TR---- 2380 (2439)
T ss_pred cCcc----cceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHH---Hhhh---------hh-hh----
Confidence 5432 22333 7899999999999999999999999999999999877766 4432 33 22
Q ss_pred ccEEEEeecCCcEEEEEeeec
Q 037555 214 HGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 214 ~~~l~~g~~dg~i~vwd~~~~ 234 (298)
.++++|+..|.|+||++...
T Consensus 2381 -~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2381 -EYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred -heeeccCcccceEEEEcccc
Confidence 69999999999999999865
No 252
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=3.9e-12 Score=101.44 Aligned_cols=173 Identities=18% Similarity=0.213 Sum_probs=135.5
Q ss_pred eeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc--CCCEEEEeeCC
Q 037555 96 MGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP--FGHEFATGSRD 173 (298)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d 173 (298)
...+..|.+.|..+.|...|..+++++.|..|.+||..... ..+....+|...|..-.|.| +.+.+++++.|
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~------~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~d 208 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS------PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRD 208 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccC------cccccccccccchhhhhccCCCCCcCceecccc
Confidence 34567899999999999999999999999999999998742 23344467888888888988 45789999999
Q ss_pred CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeee
Q 037555 174 KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRF 253 (298)
Q Consensus 174 g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 253 (298)
|.+++=.+...........+..|.++|.-++.-|..+ ..|.+++.|+.+.-+|++...... .+
T Consensus 209 gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp----~~f~S~geD~~v~~~Dlr~~~pa~-------------~~ 271 (559)
T KOG1334|consen 209 GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP----KPFLSCGEDAVVFHIDLRQDVPAE-------------KF 271 (559)
T ss_pred CceeeeeeccccceecceecccccCccceeeecCCCC----CcccccccccceeeeeeccCCccc-------------ee
Confidence 9999887765444443335556999999999999987 789999999999999998874321 11
Q ss_pred ccCCcccc---eEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 254 DPFACHVA---AVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 254 ~~~~~~~~---~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.....+.. ...+++..|..+ +.+++++.|..+++||.+
T Consensus 272 ~cr~~~~~~~v~L~~Ia~~P~nt------~~faVgG~dqf~RvYD~R 312 (559)
T KOG1334|consen 272 VCREADEKERVGLYTIAVDPRNT------NEFAVGGSDQFARVYDQR 312 (559)
T ss_pred eeeccCCccceeeeeEecCCCCc------cccccCChhhhhhhhccc
Confidence 11122333 577889999874 799999999999999864
No 253
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.32 E-value=6.6e-10 Score=93.60 Aligned_cols=173 Identities=14% Similarity=0.134 Sum_probs=112.2
Q ss_pred ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCC---CeEEEEEeccCCCCccceeeeEEeeccCCceEEE
Q 037555 82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD---RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC 158 (298)
Q Consensus 82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~ 158 (298)
...|.++|..... ...+..+...+...+|+|||++|+.+..+ ..|++||+.++. ...+..+...+..+
T Consensus 169 ~~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~--------~~~~~~~~~~~~~~ 239 (417)
T TIGR02800 169 RYELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ--------REKVASFPGMNGAP 239 (417)
T ss_pred cceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC--------EEEeecCCCCccce
Confidence 4568888876433 34455566778899999999998877654 479999987632 12223345566778
Q ss_pred EEccCCCEEEEe-eCCC--eEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee-cCC--cEEEEEee
Q 037555 159 SWNPFGHEFATG-SRDK--TVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM-ESG--VIELWSIS 232 (298)
Q Consensus 159 ~~~~~~~~l~~~-~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~-~dg--~i~vwd~~ 232 (298)
+|+|+++.|+.. +.++ .|.+||+.++... .+..+........|+|++ ..|+..+ .++ .|+++++.
T Consensus 240 ~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg-----~~l~~~s~~~g~~~iy~~d~~ 310 (417)
T TIGR02800 240 AFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDG-----KSIAFTSDRGGSPQIYMMDAD 310 (417)
T ss_pred EECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCC-----CEEEEEECCCCCceEEEEECC
Confidence 999999877644 4444 5888998876533 233344445577899988 5665544 344 46666665
Q ss_pred ecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCC---cEEEeEe
Q 037555 233 VNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADN---TVRVFQV 296 (298)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~---~i~iw~~ 296 (298)
++ . ...+. .+...+..+.|+|++ .+|+.++.++ .|.+||+
T Consensus 311 ~~-------------~-~~~l~---~~~~~~~~~~~spdg-------~~i~~~~~~~~~~~i~~~d~ 353 (417)
T TIGR02800 311 GG-------------E-VRRLT---FRGGYNASPSWSPDG-------DLIAFVHREGGGFNIAVMDL 353 (417)
T ss_pred CC-------------C-EEEee---cCCCCccCeEECCCC-------CEEEEEEccCCceEEEEEeC
Confidence 43 1 11221 234456778999999 6777777665 6677765
No 254
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=6.6e-10 Score=93.07 Aligned_cols=172 Identities=17% Similarity=0.106 Sum_probs=104.4
Q ss_pred EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCc---eeeeccccccccEEEEEEcCCCCEEEEEe-CCC
Q 037555 50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSW---KAMGRLQSHSLTVTQIRFSHDDNLLLSVS-RDR 125 (298)
Q Consensus 50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg 125 (298)
..+....+.....+|+|||+.|+..+...+..+..+.+|++..+ +................|+|||+.|+..+ .+|
T Consensus 224 ~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g 303 (428)
T PRK01029 224 KKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDG 303 (428)
T ss_pred eEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCC
Confidence 33444455566789999999988775321112334455776643 22222222223446789999999777655 467
Q ss_pred eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC---CeEEEEEccCCcceeeeeecCCCCCceEE
Q 037555 126 QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD---KTVKIWAVENKSSVKQILALPPFNSSVTA 202 (298)
Q Consensus 126 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~v~~ 202 (298)
...+|.+..... ......+..+...+....|+|+|+.|+..+.+ ..|.+||+.+++... +......+..
T Consensus 304 ~~~ly~~~~~~~----g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~----Lt~~~~~~~~ 375 (428)
T PRK01029 304 RPRIYIMQIDPE----GQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ----LTTSPENKES 375 (428)
T ss_pred CceEEEEECccc----ccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE----ccCCCCCccc
Confidence 666665542111 11123333444566788999999988877643 469999998876532 2222345678
Q ss_pred EEEeeccccCCccEEE-Eeec--CCcEEEEEeeec
Q 037555 203 LSWVGLDRQKNHGFLA-VGME--SGVIELWSISVN 234 (298)
Q Consensus 203 ~~~~~~~~~~~~~~l~-~g~~--dg~i~vwd~~~~ 234 (298)
..|+|++ ..|+ ++.. ...|+++|+..+
T Consensus 376 p~wSpDG-----~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 376 PSWAIDS-----LHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred eEECCCC-----CEEEEEECCCCCceEEEEECCCC
Confidence 9999998 4555 4433 346778887654
No 255
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.29 E-value=2e-08 Score=78.03 Aligned_cols=216 Identities=8% Similarity=0.089 Sum_probs=139.3
Q ss_pred cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC--cee--eeccccccccEEEEEEcCCCCEEEEEeC-CCeEE
Q 037555 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS--WKA--MGRLQSHSLTVTQIRFSHDDNLLLSVSR-DRQFS 128 (298)
Q Consensus 54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~ 128 (298)
.+...++=|+|+|+++.|.++..+ +++|.|-.|.++. |+. +........+-.-+++++++++++++.. .|.|.
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~--~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~ 114 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEP--GEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVS 114 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEec--CCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEE
Confidence 456778899999999999998764 2467787777764 443 2222222334478999999999988865 68999
Q ss_pred EEEeccCCCCccceeeeEEeeccCCc----------eEEEEEccCCCEEEEeeC-CCeEEEEEccCCcceeeeeecCCCC
Q 037555 129 VFAIQRTGTGEIDYQLIARQEAHKRI----------IWSCSWNPFGHEFATGSR-DKTVKIWAVENKSSVKQILALPPFN 197 (298)
Q Consensus 129 iwd~~~~~~~~~~~~~~~~~~~~~~~----------v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~ 197 (298)
++.++..... ........|.+. +....+.|+++++++..- --+|.+|++..+.............
T Consensus 115 v~p~~~dG~l----~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G 190 (346)
T COG2706 115 VYPLQADGSL----QPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPG 190 (346)
T ss_pred EEEcccCCcc----ccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCC
Confidence 9998764321 112122223333 788899999999998863 3469999998765443222222345
Q ss_pred CceEEEEEeeccccCCccEEEEee-cCCcEEEEEeeecccccccCCCCCCcceeeeeccCC---cccceEEEEEeecCCC
Q 037555 198 SSVTALSWVGLDRQKNHGFLAVGM-ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFA---CHVAAVNRMAWKTHEK 273 (298)
Q Consensus 198 ~~v~~~~~~~~~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~ 273 (298)
...+.|.|+|++ ++....+ -+++|-+|......... ..+..+..+. .-......|..+++|
T Consensus 191 ~GPRHi~FHpn~-----k~aY~v~EL~stV~v~~y~~~~g~~---------~~lQ~i~tlP~dF~g~~~~aaIhis~dG- 255 (346)
T COG2706 191 AGPRHIVFHPNG-----KYAYLVNELNSTVDVLEYNPAVGKF---------EELQTIDTLPEDFTGTNWAAAIHISPDG- 255 (346)
T ss_pred CCcceEEEcCCC-----cEEEEEeccCCEEEEEEEcCCCceE---------EEeeeeccCccccCCCCceeEEEECCCC-
Confidence 668999999999 5665555 48999999998741110 1222221111 123456788899998
Q ss_pred CCCCcceEEEeeeC-CCcEEEeEe
Q 037555 274 PKNSRTMQLASCGA-DNTVRVFQV 296 (298)
Q Consensus 274 ~~~~~~~~l~s~~~-d~~i~iw~~ 296 (298)
++|.++.. ...|-+|.+
T Consensus 256 ------rFLYasNRg~dsI~~f~V 273 (346)
T COG2706 256 ------RFLYASNRGHDSIAVFSV 273 (346)
T ss_pred ------CEEEEecCCCCeEEEEEE
Confidence 67766642 235555544
No 256
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=9.5e-11 Score=95.61 Aligned_cols=163 Identities=16% Similarity=0.279 Sum_probs=124.8
Q ss_pred EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecc------ccccc-----cEEEEEEcCCCCEE
Q 037555 50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRL------QSHSL-----TVTQIRFSHDDNLL 118 (298)
Q Consensus 50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~------~~~~~-----~v~~~~~~~~~~~l 118 (298)
..|....++++++..++...+|++| +.+|.|..||.+....+.++ ..|.+ .|+++.|+.+|-.+
T Consensus 169 ~P~~~~~~~lN~v~in~~hgLla~G-----t~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~ 243 (703)
T KOG2321|consen 169 NPFETDSGELNVVSINEEHGLLACG-----TEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHV 243 (703)
T ss_pred cccccccccceeeeecCccceEEec-----ccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeE
Confidence 4444556889999999999999999 56999999999876555443 23443 39999999999999
Q ss_pred EEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC--CCEEEEeeCCCeEEEEEccCCcceeeeeecCCC
Q 037555 119 LSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF--GHEFATGSRDKTVKIWAVENKSSVKQILALPPF 196 (298)
Q Consensus 119 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 196 (298)
++|+.+|.+.|||++... ..+..-....-+|..+.|.+. ++.+++.. ...++|||-.+++... .+. .
T Consensus 244 aVGts~G~v~iyDLRa~~------pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~a---siE-p 312 (703)
T KOG2321|consen 244 AVGTSTGSVLIYDLRASK------PLLVKDHGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMA---SIE-P 312 (703)
T ss_pred EeeccCCcEEEEEcccCC------ceeecccCCccceeeecccccCCCceEEecc-hHHhhhcccccCCcee---ecc-c
Confidence 999999999999999743 222222334568899999875 34555543 4679999999998876 444 4
Q ss_pred CCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555 197 NSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 233 (298)
...+..+++-|++ .+++++.+++.+..|=+..
T Consensus 313 t~~lND~C~~p~s-----Gm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 313 TSDLNDFCFVPGS-----GMFFTANESSKMHTYYIPS 344 (703)
T ss_pred cCCcCceeeecCC-----ceEEEecCCCcceeEEccc
Confidence 4568999999988 7999999998888776654
No 257
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.26 E-value=2.2e-08 Score=80.56 Aligned_cols=129 Identities=9% Similarity=0.141 Sum_probs=101.2
Q ss_pred CCCceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCce-EEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC
Q 037555 45 LWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAA-EIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR 123 (298)
Q Consensus 45 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~-~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 123 (298)
.|.-...--+|...|.=..+..++.-++.|. .|| .+-|+|.++++.. .+...-+.|.++..+++|++++++..
T Consensus 348 ~~~~~~iqv~~~~~VrY~r~~~~~e~~vigt-----~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~dGK~~vvaNd 421 (668)
T COG4946 348 PWDGYSIQVGKKGGVRYRRIQVDPEGDVIGT-----NDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSPDGKKVVVAND 421 (668)
T ss_pred CCCCeeEEcCCCCceEEEEEccCCcceEEec-----cCCceEEEEecCCceEE-EeeCCccceEEEEEcCCCcEEEEEcC
Confidence 4443344457888899888888888888884 466 8999999977654 45556778999999999999999999
Q ss_pred CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCC----eEEEEEccCCcc
Q 037555 124 DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDK----TVKIWAVENKSS 186 (298)
Q Consensus 124 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~~wd~~~~~~ 186 (298)
...|.+.|++++ .....-+...+-|+.+.|+|+++++|-+--+| .|+++|+..++.
T Consensus 422 r~el~vididng-------nv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 422 RFELWVIDIDNG-------NVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred ceEEEEEEecCC-------CeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 999999999984 33333345567899999999999999887665 589999987654
No 258
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.24 E-value=4.9e-08 Score=73.72 Aligned_cols=216 Identities=13% Similarity=0.120 Sum_probs=128.9
Q ss_pred EEEcCCCCEEEeEeccCCCCceEEEEEEcCCc--eeeecc---ccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCC
Q 037555 62 LCCDHQGKLVASSCKAQSTAAAEIWLWEVGSW--KAMGRL---QSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136 (298)
Q Consensus 62 ~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~--~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 136 (298)
++.+.+|++||+.. |..|.|-..+.. ..+... +.....=..++|+||+.+||.+...|+|++||+....
T Consensus 3 ~~~~~~Gk~lAi~q------d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~ 76 (282)
T PF15492_consen 3 LALSSDGKLLAILQ------DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE 76 (282)
T ss_pred eeecCCCcEEEEEe------ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce
Confidence 56678999999883 777877766532 111221 2222344689999999999999999999999987421
Q ss_pred CCccceeeeE-EeeccCCceEEEEEccC------CCEEEEeeCCCeEEEEEccCC--cceeeeee--c-CCCCCceEEEE
Q 037555 137 TGEIDYQLIA-RQEAHKRIIWSCSWNPF------GHEFATGSRDKTVKIWAVENK--SSVKQILA--L-PPFNSSVTALS 204 (298)
Q Consensus 137 ~~~~~~~~~~-~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~~wd~~~~--~~~~~~~~--~-~~~~~~v~~~~ 204 (298)
.-. ..+.. ........|..+.|.+- ...|++-..+|.++-|-+..+ +.-..... + ..+...|.++.
T Consensus 77 lf~--I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~v 154 (282)
T PF15492_consen 77 LFV--IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAV 154 (282)
T ss_pred eEE--cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEE
Confidence 100 00000 00112346677777642 235777778888887776332 22221112 2 23467899999
Q ss_pred EeeccccCCccEEEEee-cCC----------cEEEEEeeecccccc----cCCCCC-C--cceeeee------ccCCccc
Q 037555 205 WVGLDRQKNHGFLAVGM-ESG----------VIELWSISVNRTNDV----STPAPS-T--ANIIIRF------DPFACHV 260 (298)
Q Consensus 205 ~~~~~~~~~~~~l~~g~-~dg----------~i~vwd~~~~~~~~~----~~~~~~-~--~~~~~~~------~~~~~~~ 260 (298)
++|.. ++|++|+ ... -+..|.+-++.+-.. ...... . ......+ .......
T Consensus 155 y~p~h-----~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~ 229 (282)
T PF15492_consen 155 YHPKH-----RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQ 229 (282)
T ss_pred EcCCC-----CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCC
Confidence 99987 4555554 322 366777755432111 000000 0 0011111 1112245
Q ss_pred ceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 261 AAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 261 ~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
..|..|..|||+ .+|++...+|.|.+|++.
T Consensus 230 d~i~kmSlSPdg-------~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 230 DGIFKMSLSPDG-------SLLACIHFSGSLSLWEIP 259 (282)
T ss_pred CceEEEEECCCC-------CEEEEEEcCCeEEEEecC
Confidence 679999999999 899999999999999974
No 259
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.21 E-value=1e-10 Score=98.29 Aligned_cols=225 Identities=16% Similarity=0.266 Sum_probs=154.4
Q ss_pred EEeccCCCceEEEEEcCCCC-EEEeEeccCCCCceEEEEEEcCCce-eeeccccccccEEEEEEcCCCCEEEEEeCCCeE
Q 037555 50 HKLYGHGNELFSLCCDHQGK-LVASSCKAQSTAAAEIWLWEVGSWK-AMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF 127 (298)
Q Consensus 50 ~~~~~h~~~v~~~~~s~~~~-~l~~~~~~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 127 (298)
..+.||...|+.+.|+|..+ .+++++ .|..+..||+++.. ++..+.........++|+-....+.+.+....|
T Consensus 108 f~lhghsraitd~n~~~q~pdVlatcs-----vdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i 182 (1081)
T KOG0309|consen 108 FVLHGHSRAITDINFNPQHPDVLATCS-----VDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDI 182 (1081)
T ss_pred EEEecCccceeccccCCCCCcceeecc-----ccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCce
Confidence 45679999999999998654 677774 58899999998754 444455555667889998855556666677889
Q ss_pred EEEEeccCCCCccceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEe
Q 037555 128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWV 206 (298)
Q Consensus 128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~ 206 (298)
++||.+.+ ..++..+++|...|+.++|+. ....+.+++.|++|+.||......... .......+|..-.+.
T Consensus 183 ~vwd~r~g------s~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~--~~vtt~~piw~~r~~ 254 (1081)
T KOG0309|consen 183 FVWDLRKG------STPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESK--RTVTTNFPIWRGRYL 254 (1081)
T ss_pred EEEeccCC------CcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccc--eeccccCcceecccc
Confidence 99999986 456778888999999999986 346788999999999999876543221 222356788888888
Q ss_pred eccccCCccEEEEee-cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCC---CCCCcceEE
Q 037555 207 GLDRQKNHGFLAVGM-ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEK---PKNSRTMQL 282 (298)
Q Consensus 207 ~~~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~l 282 (298)
|.+. .+++.-. .+..+.+++.++........ .....++.+.+|...|....|-..+. ........|
T Consensus 255 Pfg~----g~~~mp~~G~n~v~~~~c~n~d~e~n~~------~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQL 324 (1081)
T KOG0309|consen 255 PFGE----GYCIMPMVGGNMVPQLRCENSDLEWNVF------DLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQL 324 (1081)
T ss_pred ccCc----eeEeccccCCeeeeeccccchhhhhccc------cCCcceeeecCcchHHHHHhhhhcccccCCCCccceeE
Confidence 8874 3333222 22345555444321110000 12233444778999999888876543 112234689
Q ss_pred EeeeCCCcEEEeEec
Q 037555 283 ASCGADNTVRVFQVN 297 (298)
Q Consensus 283 ~s~~~d~~i~iw~~~ 297 (298)
+|-+.|..+|+|-+.
T Consensus 325 VTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 325 VTWSKDQTLRLWPID 339 (1081)
T ss_pred EEeecCCceEeeecc
Confidence 999999999999764
No 260
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.20 E-value=7.6e-10 Score=86.61 Aligned_cols=157 Identities=14% Similarity=0.140 Sum_probs=108.8
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCe---EEEEEc
Q 037555 105 TVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKT---VKIWAV 181 (298)
Q Consensus 105 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~---i~~wd~ 181 (298)
....+..++.+++++.+..+....++++...... .+...... ....-+.+.|..+......+..-|. +.+|..
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~---~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKG---AKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCc---ceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 3445667788899999998888888888764331 22222222 2223344555555555555544444 445544
Q ss_pred cCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccc
Q 037555 182 ENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVA 261 (298)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (298)
..+... .+-+|-+.++.++|+|++ ++|+++..|..|+|-.+... ..+..+ .-||..
T Consensus 140 ~~~~~~----~~lGhvSml~dVavS~D~-----~~IitaDRDEkIRvs~ypa~-------------f~Iesf--clGH~e 195 (390)
T KOG3914|consen 140 DSGRCE----PILGHVSMLLDVAVSPDD-----QFIITADRDEKIRVSRYPAT-------------FVIESF--CLGHKE 195 (390)
T ss_pred cccCcc----hhhhhhhhhheeeecCCC-----CEEEEecCCceEEEEecCcc-------------cchhhh--ccccHh
Confidence 433322 445799999999999999 89999999999999887654 333333 457999
Q ss_pred eEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 262 AVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 262 ~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
-|..++.-++. .|+++|.|++|++||+.
T Consensus 196 FVS~isl~~~~--------~LlS~sGD~tlr~Wd~~ 223 (390)
T KOG3914|consen 196 FVSTISLTDNY--------LLLSGSGDKTLRLWDIT 223 (390)
T ss_pred heeeeeeccCc--------eeeecCCCCcEEEEecc
Confidence 99999998875 79999999999999985
No 261
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=2.9e-08 Score=82.79 Aligned_cols=155 Identities=7% Similarity=-0.019 Sum_probs=97.4
Q ss_pred ceEEEEEcCCCCE-EEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEE-EeCC--CeEEEEEec
Q 037555 58 ELFSLCCDHQGKL-VASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLS-VSRD--RQFSVFAIQ 133 (298)
Q Consensus 58 ~v~~~~~s~~~~~-l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d--g~i~iwd~~ 133 (298)
.+....|+|+|+. ++..+.+ ..+..|.++|+.+++...... ..+......|+|||+.++. .+.+ ..|.++++.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~--~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYG--ERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred CeEeEEECCCCCcEEEEEEcc--CCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 7789999999985 6655542 125689999998876544333 4555667889999986654 4434 456666765
Q ss_pred cCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC-C--eEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555 134 RTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD-K--TVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR 210 (298)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (298)
.+. ...+..+........|+|||+.|+..+.. + .|.+.|+.+++... + ...+. ....|+|++
T Consensus 266 ~g~--------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r-l-t~~g~----~~~~~SPDG- 330 (419)
T PRK04043 266 TKT--------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ-V-VFHGK----NNSSVSTYK- 330 (419)
T ss_pred CCc--------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe-C-ccCCC----cCceECCCC-
Confidence 421 23333333333456899999988877642 3 57888887766533 1 11111 124899999
Q ss_pred cCCccEEEEeecC---------CcEEEEEeeec
Q 037555 211 QKNHGFLAVGMES---------GVIELWSISVN 234 (298)
Q Consensus 211 ~~~~~~l~~g~~d---------g~i~vwd~~~~ 234 (298)
..|+..... ..|.+.|+.++
T Consensus 331 ----~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g 359 (419)
T PRK04043 331 ----NYIVYSSRETNNEFGKNTFNLYLISTNSD 359 (419)
T ss_pred ----CEEEEEEcCCCcccCCCCcEEEEEECCCC
Confidence 555554432 35777777654
No 262
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.19 E-value=4e-09 Score=86.50 Aligned_cols=148 Identities=19% Similarity=0.234 Sum_probs=122.4
Q ss_pred CEEEeEeccCCCCceEEEEEEcCCceeeeccc--cccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeE
Q 037555 69 KLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ--SHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIA 146 (298)
Q Consensus 69 ~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 146 (298)
..++-| ...|.|.+|++..++....+. .|.+.|.++.++.+-..|.+++.|+.+..|+... ...++
T Consensus 71 ~~lvlg-----t~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~-------~~~~~ 138 (541)
T KOG4547|consen 71 SMLVLG-----TPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE-------KVIIR 138 (541)
T ss_pred eEEEee-----cCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc-------ceeee
Confidence 355556 568999999999998877765 6999999999999888999999999999999987 66778
Q ss_pred EeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEE-EeecCCc
Q 037555 147 RQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLA-VGMESGV 225 (298)
Q Consensus 147 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~-~g~~dg~ 225 (298)
........+.+++.+||+..+++++ +.|++||+++.+.+. .+.+|.++|++++|.-.-..--+.+++ +...+..
T Consensus 139 ~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~---~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~ 213 (541)
T KOG4547|consen 139 IWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVI---TFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERG 213 (541)
T ss_pred eeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEE---EecCCCcceEEEEEEEeccccccceeeeccccccc
Confidence 8888888899999999999999987 689999999999888 899999999999998871011113444 4445667
Q ss_pred EEEEEeee
Q 037555 226 IELWSISV 233 (298)
Q Consensus 226 i~vwd~~~ 233 (298)
+.+|-++.
T Consensus 214 i~~w~v~~ 221 (541)
T KOG4547|consen 214 ITVWVVEK 221 (541)
T ss_pred eeEEEEEc
Confidence 88888775
No 263
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=4.2e-08 Score=80.27 Aligned_cols=199 Identities=15% Similarity=0.249 Sum_probs=128.1
Q ss_pred CCCceEEEEEcCCC--CEEEeEeccCCCCceEEEEEEcCCceeeecccc---ccccEEEEEEcCCCC-EEEEEe--CC--
Q 037555 55 HGNELFSLCCDHQG--KLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS---HSLTVTQIRFSHDDN-LLLSVS--RD-- 124 (298)
Q Consensus 55 h~~~v~~~~~s~~~--~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~---~~~~v~~~~~~~~~~-~l~~~~--~d-- 124 (298)
|...|+.+.+||.+ ..+|+---+..+.-..|+||.......-..+.. ....=-.+.|++-|. +|+.++ -|
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt 243 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT 243 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence 56778999999863 355543322235678999998863222111110 112223577887665 232222 23
Q ss_pred -------CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee--CCCeEEEEEccCCcceeeeeecCC
Q 037555 125 -------RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS--RDKTVKIWAVENKSSVKQILALPP 195 (298)
Q Consensus 125 -------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~ 195 (298)
.++++.+++. ......+ .-.++|.++.|+|+++.|+++. .--.+.++|++. ..+. .+
T Consensus 244 n~SYYGEq~Lyll~t~g-------~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~---df-- 309 (566)
T KOG2315|consen 244 NASYYGEQTLYLLATQG-------ESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVF---DF-- 309 (566)
T ss_pred CccccccceEEEEEecC-------ceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeE---eC--
Confidence 3577777662 2222232 2478999999999998887764 356799999985 3333 44
Q ss_pred CCCceEEEEEeeccccCCccEEEEeec---CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555 196 FNSSVTALSWVGLDRQKNHGFLAVGME---SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE 272 (298)
Q Consensus 196 ~~~~v~~~~~~~~~~~~~~~~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 272 (298)
.+++-.++-|+|.+ .+|+.++- -|.|-|||+.+. +++..+. ...-+-+.|+|||
T Consensus 310 ~egpRN~~~fnp~g-----~ii~lAGFGNL~G~mEvwDv~n~-------------K~i~~~~-----a~~tt~~eW~PdG 366 (566)
T KOG2315|consen 310 PEGPRNTAFFNPHG-----NIILLAGFGNLPGDMEVWDVPNR-------------KLIAKFK-----AANTTVFEWSPDG 366 (566)
T ss_pred CCCCccceEECCCC-----CEEEEeecCCCCCceEEEeccch-------------hhccccc-----cCCceEEEEcCCC
Confidence 35667899999999 66666553 489999999875 4444432 2334568999999
Q ss_pred CCCCCcceEEEeeeC------CCcEEEeEec
Q 037555 273 KPKNSRTMQLASCGA------DNTVRVFQVN 297 (298)
Q Consensus 273 ~~~~~~~~~l~s~~~------d~~i~iw~~~ 297 (298)
.+++|+.. |+.++||++.
T Consensus 367 -------e~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 367 -------EYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred -------cEEEEEeccccEEecCCeEEEEec
Confidence 88888875 6889999864
No 264
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.17 E-value=7.6e-10 Score=81.92 Aligned_cols=220 Identities=12% Similarity=0.106 Sum_probs=127.8
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceee-eccccccccEEEEEEcCCCCEEEEEeC----
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAM-GRLQSHSLTVTQIRFSHDDNLLLSVSR---- 123 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~---- 123 (298)
.+.+..|+++-.+-+.+-.++.++++ .+||.+.+.+.+....+ ..+..-...-.+.+....++.+.++..
T Consensus 82 ~~~~a~~sep~p~~~~s~~~t~V~~~-----~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n 156 (319)
T KOG4714|consen 82 FKVLAKNSEIDPNDACTMTDNRVCIG-----YADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWN 156 (319)
T ss_pred eeeeeccCCCCCcccccccCCceEec-----CCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEe
Confidence 44444555544444445556778888 56999999998652111 111111111122333334555554332
Q ss_pred -CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC-CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceE
Q 037555 124 -DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF-GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVT 201 (298)
Q Consensus 124 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~ 201 (298)
-+..+.|+++..+ ...........|.+++-+|. .+.++.|+.||.+.+||.++...+. ..+..|+.++.
T Consensus 157 ~~d~~~a~~~~p~~-------t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~--S~l~ahk~~i~ 227 (319)
T KOG4714|consen 157 AQDNFYANTLDPIK-------TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPV--SLLKAHKAEIW 227 (319)
T ss_pred eccceeeecccccc-------cccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchH--HHHHHhhhhhh
Confidence 2345566665422 11111112234899999994 4677788899999999999875443 34667999999
Q ss_pred EEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccC-------CCCCCcceeeeecc-CCcccceEEEEEeecCCC
Q 037555 202 ALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVST-------PAPSTANIIIRFDP-FACHVAAVNRMAWKTHEK 273 (298)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~ 273 (298)
.+-|+|..+ ..|+++++||.+.-||..+........ ...+..+....+.. +......|+++... +
T Consensus 228 eV~FHpk~p----~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~--g- 300 (319)
T KOG4714|consen 228 EVHFHPKNP----EHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVL--G- 300 (319)
T ss_pred heeccCCCc----hheeEecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeecc--C-
Confidence 999999876 899999999999999987431111000 01111111111111 11223345554443 3
Q ss_pred CCCCcceEEEeeeCCCcEEEeE
Q 037555 274 PKNSRTMQLASCGADNTVRVFQ 295 (298)
Q Consensus 274 ~~~~~~~~l~s~~~d~~i~iw~ 295 (298)
..|++|+.-+.|++++
T Consensus 301 ------~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 301 ------PCLVCGTDAEAIYLTR 316 (319)
T ss_pred ------ceEEeccccceEEEec
Confidence 6789998888888875
No 265
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=1.4e-08 Score=85.79 Aligned_cols=172 Identities=15% Similarity=0.099 Sum_probs=105.8
Q ss_pred eEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCC---CeEEEEEeccCCCCccceeeeEEeeccCCceEEEE
Q 037555 83 AEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD---RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS 159 (298)
Q Consensus 83 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 159 (298)
..|.++|.+.++ ...+..+...+....|+|||+.|+..+.+ ..|.+|++..+. ...+....+.+....
T Consensus 179 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~--------~~~l~~~~g~~~~~~ 249 (430)
T PRK00178 179 YTLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR--------REQITNFEGLNGAPA 249 (430)
T ss_pred eEEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC--------EEEccCCCCCcCCeE
Confidence 368888887444 34455567788999999999988776543 368888987532 122222334455789
Q ss_pred EccCCCEEEE-eeCCC--eEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee-cCC--cEEEEEeee
Q 037555 160 WNPFGHEFAT-GSRDK--TVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM-ESG--VIELWSISV 233 (298)
Q Consensus 160 ~~~~~~~l~~-~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~-~dg--~i~vwd~~~ 233 (298)
|+|+++.|+. .+.+| .|.++|+.++... .+..+........|+|++ ..|+..+ .++ .|+++++.+
T Consensus 250 ~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg-----~~i~f~s~~~g~~~iy~~d~~~ 320 (430)
T PRK00178 250 WSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDG-----RTLYFTSDRGGKPQIYKVNVNG 320 (430)
T ss_pred ECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCC-----CEEEEEECCCCCceEEEEECCC
Confidence 9999988874 44444 5888899876543 233344556678899998 4554444 444 466666654
Q ss_pred cccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC-CC--cEEEeEe
Q 037555 234 NRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA-DN--TVRVFQV 296 (298)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~-d~--~i~iw~~ 296 (298)
++ . ..+. ..+ .......|+|++ ..|+..+. ++ .|.+||+
T Consensus 321 g~-------------~-~~lt-~~~--~~~~~~~~Spdg-------~~i~~~~~~~~~~~l~~~dl 362 (430)
T PRK00178 321 GR-------------A-ERVT-FVG--NYNARPRLSADG-------KTLVMVHRQDGNFHVAAQDL 362 (430)
T ss_pred CC-------------E-EEee-cCC--CCccceEECCCC-------CEEEEEEccCCceEEEEEEC
Confidence 42 1 1111 111 222356899998 66665553 33 3666665
No 266
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.15 E-value=3e-08 Score=90.00 Aligned_cols=225 Identities=15% Similarity=0.188 Sum_probs=141.0
Q ss_pred CCCceEEEEEcCCCCEEEeEeccCCCC-ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC---CCeEEEE
Q 037555 55 HGNELFSLCCDHQGKLVASSCKAQSTA-AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR---DRQFSVF 130 (298)
Q Consensus 55 h~~~v~~~~~s~~~~~l~~~~~~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iw 130 (298)
+.+.-..++|-.||.++|+.+.+.... -..++||+-+ |+...+-..-.+--.+++|.|.|++||+.-. ...|.+|
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFf 286 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFF 286 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEE
Confidence 344566899999999999987643222 5799999976 6655444433334457899999999998865 3456666
Q ss_pred EeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcce-eeeeecCCCCCceEEEEEeecc
Q 037555 131 AIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSV-KQILALPPFNSSVTALSWVGLD 209 (298)
Q Consensus 131 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 209 (298)
.-+--.. +.....+......|..+.|++++..||..-.|. |.+|-..+..-. +....+. ....+..+.|+|..
T Consensus 287 ErNGLrh----geF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~-~~~~~~~~~Wdpe~ 360 (928)
T PF04762_consen 287 ERNGLRH----GEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFS-SSESVNFVKWDPEK 360 (928)
T ss_pred ecCCcEe----eeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEcc-CCCCCCceEECCCC
Confidence 6442211 222222234556899999999999999987665 999988765421 1111222 23345569999987
Q ss_pred ccCCccEEEEeecCCcEEEEEeeecccccccCCCCC---------Ccceeeeecc----------CCcccceEEEEEeec
Q 037555 210 RQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPS---------TANIIIRFDP----------FACHVAAVNRMAWKT 270 (298)
Q Consensus 210 ~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~---------~~~~~~~~~~----------~~~~~~~v~~~~~~~ 270 (298)
+ ..|...+.+|.+..+++.-.........+.+ ..-.+..+.. .-....+|.+++|++
T Consensus 361 p----~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~ 436 (928)
T PF04762_consen 361 P----LRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSP 436 (928)
T ss_pred C----CEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeC
Confidence 5 6777777777776666543211110000000 0000000000 001357899999999
Q ss_pred CCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 271 HEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 271 ~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
++ ..+++-..||.|.+|...
T Consensus 437 ~~-------~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 437 SN-------SRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred CC-------CeEEEEECCCCEEEEEec
Confidence 98 679999999999999853
No 267
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.14 E-value=2.2e-08 Score=74.75 Aligned_cols=201 Identities=12% Similarity=0.022 Sum_probs=129.4
Q ss_pred EEEEcC-----CCCEEEeEeccCCCCceEEEEEEcCCceee-eccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEec
Q 037555 61 SLCCDH-----QGKLVASSCKAQSTAAAEIWLWEVGSWKAM-GRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQ 133 (298)
Q Consensus 61 ~~~~s~-----~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~ 133 (298)
.+.|-| ...+||.| +..|...+|...+.+.. .....|...|+-+.=.- ....+..++.|.+++++++.
T Consensus 72 g~~F~p~s~~~kc~~la~g-----G~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~ 146 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADG-----GASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVS 146 (344)
T ss_pred cccccchHhhccccEEEec-----cccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEe
Confidence 455655 33477887 45899999998865432 33333444333221111 22356778889999999988
Q ss_pred cCCCCccceeeeEEeeccCC--ceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecccc
Q 037555 134 RTGTGEIDYQLIARQEAHKR--IIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQ 211 (298)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (298)
..... . ..|.. .+.++.++++++++++.++...|..|.+..................-.+..|+...
T Consensus 147 ~~s~~-------~--~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-- 215 (344)
T KOG4532|consen 147 GDSNK-------F--AVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-- 215 (344)
T ss_pred cCccc-------c--eeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc--
Confidence 64321 1 11222 37889999999999999999999999997644322111233344555678888887
Q ss_pred CCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeec-cCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCc
Q 037555 212 KNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFD-PFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNT 290 (298)
Q Consensus 212 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~ 290 (298)
..+|++.+||.+.|||++....+.. ... ....|.+.+..+.|++.+. -.+|+-.-.=+.
T Consensus 216 ---~~FAv~~Qdg~~~I~DVR~~~tpm~------------~~sstrp~hnGa~R~c~Fsl~g~-----lDLLf~sEhfs~ 275 (344)
T KOG4532|consen 216 ---LQFAVVFQDGTCAIYDVRNMATPMA------------EISSTRPHHNGAFRVCRFSLYGL-----LDLLFISEHFSR 275 (344)
T ss_pred ---ceEEEEecCCcEEEEEecccccchh------------hhcccCCCCCCceEEEEecCCCc-----ceEEEEecCcce
Confidence 7999999999999999997643221 111 1334889999999998652 134444333456
Q ss_pred EEEeEec
Q 037555 291 VRVFQVN 297 (298)
Q Consensus 291 i~iw~~~ 297 (298)
+.+-|++
T Consensus 276 ~hv~D~R 282 (344)
T KOG4532|consen 276 VHVVDTR 282 (344)
T ss_pred EEEEEcc
Confidence 6666654
No 268
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=1.1e-10 Score=95.11 Aligned_cols=169 Identities=17% Similarity=0.169 Sum_probs=123.1
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCc-------eeeeccccccccEEEEEEcCCCCEEEEE
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSW-------KAMGRLQSHSLTVTQIRFSHDDNLLLSV 121 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 121 (298)
+..+.||+..|..++--.+.+.++++++ |.+|++|.++.. .+..+++.|+.+|.++.|-.+.++++++
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASk-----DKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc 802 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASK-----DKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC 802 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccC-----CceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec
Confidence 4567899999999987777788888855 999999998632 2455678899999999999887777665
Q ss_pred eCCCeEEEEEeccCCCCccceeeeEEe--eccCCceEEEEEccC--CCEE-EEeeCCCeEEEEEccCCcceeeeeec--C
Q 037555 122 SRDRQFSVFAIQRTGTGEIDYQLIARQ--EAHKRIIWSCSWNPF--GHEF-ATGSRDKTVKIWAVENKSSVKQILAL--P 194 (298)
Q Consensus 122 ~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~--~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~--~ 194 (298)
||-|++||.-.+. ++... ....+.+..+..-++ ...+ +.++...+|+++|.+..+...++... +
T Consensus 803 --D~giHlWDPFigr-------~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~ 873 (1034)
T KOG4190|consen 803 --DGGIHLWDPFIGR-------LLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAP 873 (1034)
T ss_pred --cCcceeecccccc-------hhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCC
Confidence 8999999976532 22211 111233333433342 3333 44467889999999988766654433 3
Q ss_pred CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccc
Q 037555 195 PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRT 236 (298)
Q Consensus 195 ~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~ 236 (298)
+.+..+++++..+.| +.++.+-..|.|.+.|.+++..
T Consensus 874 ~Pna~~R~iaVa~~G-----N~lAa~LSnGci~~LDaR~G~v 910 (1034)
T KOG4190|consen 874 GPNALTRAIAVADKG-----NKLAAALSNGCIAILDARNGKV 910 (1034)
T ss_pred CCchheeEEEeccCc-----chhhHHhcCCcEEEEecCCCce
Confidence 445668999999998 8999999999999999998853
No 269
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.14 E-value=5.3e-10 Score=85.90 Aligned_cols=166 Identities=14% Similarity=0.260 Sum_probs=113.7
Q ss_pred cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce----ee----eccccccccEEEEEEcCC-CCEEEEEeCC
Q 037555 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK----AM----GRLQSHSLTVTQIRFSHD-DNLLLSVSRD 124 (298)
Q Consensus 54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~----~~----~~~~~~~~~v~~~~~~~~-~~~l~~~~~d 124 (298)
+|+.-|.++.++.|+..++++ +|=.|.+|+++--. .+ ..+..-+.-|++..|+|. -+.++-.+..
T Consensus 162 aHtyhiNSIS~NsD~Et~lSA------DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSK 235 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSA------DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSK 235 (433)
T ss_pred cceeEeeeeeecCccceEeec------cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCC
Confidence 688899999999999999998 47899999986321 11 112234567899999994 4577778889
Q ss_pred CeEEEEEeccCCCCcccee---------eeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEcc-CCcceeeeeecC
Q 037555 125 RQFSVFAIQRTGTGEIDYQ---------LIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVE-NKSSVKQILALP 194 (298)
Q Consensus 125 g~i~iwd~~~~~~~~~~~~---------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~-~~~~~~~~~~~~ 194 (298)
|+|++-|++....-....+ ...-+..--..|..+.|+++|+++++-+. -+|++||+. ..+++. +++
T Consensus 236 GtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~---t~~ 311 (433)
T KOG1354|consen 236 GTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVE---TYP 311 (433)
T ss_pred CcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcce---EEe
Confidence 9999999985321110000 00111122346788999999999987664 679999994 344443 222
Q ss_pred CCC------------C---ceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555 195 PFN------------S---SVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 195 ~~~------------~---~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
.|. . .-..++|+.++ .++++|+....+++|+...+
T Consensus 312 vh~~lr~kLc~lYEnD~IfdKFec~~sg~~-----~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 312 VHEYLRSKLCSLYENDAIFDKFECSWSGND-----SYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred ehHhHHHHHHHHhhccchhheeEEEEcCCc-----ceEecccccceEEEecCCCC
Confidence 221 1 12457788877 79999999999999996544
No 270
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=2.8e-09 Score=89.64 Aligned_cols=158 Identities=14% Similarity=0.180 Sum_probs=113.3
Q ss_pred CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce---------------eeeccccccccEEEEEEcCCCCEEEE
Q 037555 56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK---------------AMGRLQSHSLTVTQIRFSHDDNLLLS 120 (298)
Q Consensus 56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~l~~ 120 (298)
.....|+.|+....++|.| +.||.++|..+.+.. .-+++.+|...|.-+.|+.+.+.|-+
T Consensus 14 nvkL~c~~WNke~gyIAcg-----G~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTt 88 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACG-----GADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTT 88 (1189)
T ss_pred CceEEEEEEcccCCeEEec-----cccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccc
Confidence 4467899999999999999 569999999876421 12457899999999999999999999
Q ss_pred EeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCce
Q 037555 121 VSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSV 200 (298)
Q Consensus 121 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v 200 (298)
+..+|.|.+|-+-.++ +-....-....+.|.+++|+.+|..++....||.|.+=.++..+.... .++ ....
T Consensus 89 SDt~GlIiVWmlykgs-----W~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgK--eLk--g~~l 159 (1189)
T KOG2041|consen 89 SDTSGLIIVWMLYKGS-----WCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGK--ELK--GQLL 159 (1189)
T ss_pred cCCCceEEEEeeeccc-----HHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecch--hcc--hhec
Confidence 9999999999987643 111112223456789999999999999999999888776665433220 111 1223
Q ss_pred EEEEEeeccccCCccEEEEeecCCcEEEEEee
Q 037555 201 TALSWVGLDRQKNHGFLAVGMESGVIELWSIS 232 (298)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~ 232 (298)
..+.|+++. ..++.+-..|.+.+||..
T Consensus 160 ~hv~ws~D~-----~~~Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 160 AHVLWSEDL-----EQALFKKANGETHLYDNQ 186 (1189)
T ss_pred cceeecccH-----HHHHhhhcCCcEEEeccc
Confidence 456677766 455555556666666654
No 271
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.13 E-value=5e-08 Score=90.14 Aligned_cols=220 Identities=8% Similarity=0.028 Sum_probs=131.0
Q ss_pred ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc----------c-------cccEEEEEEcC-CCCEEE
Q 037555 58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS----------H-------SLTVTQIRFSH-DDNLLL 119 (298)
Q Consensus 58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~----------~-------~~~v~~~~~~~-~~~~l~ 119 (298)
....+++++++..|+++. ...+.|+++|..++.. .++.+ . -..-..++++| ++.+++
T Consensus 625 ~P~GIavd~~gn~LYVaD----t~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyV 699 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVAD----TENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYI 699 (1057)
T ss_pred CCcEEEEeCCCCEEEEEe----CCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEE
Confidence 357889998888776663 2357899999876543 22211 0 11235799999 566777
Q ss_pred EEeCCCeEEEEEeccCCCCcccee-eeEEee------ccCCceEEEEEccCCCEEEE-eeCCCeEEEEEccCCcceeee-
Q 037555 120 SVSRDRQFSVFAIQRTGTGEIDYQ-LIARQE------AHKRIIWSCSWNPFGHEFAT-GSRDKTVKIWAVENKSSVKQI- 190 (298)
Q Consensus 120 ~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~------~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~wd~~~~~~~~~~- 190 (298)
+.+.++.|++||............ ...... ..-.....++++|+++.|++ -+.++.|++||+.++......
T Consensus 700 ad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~g 779 (1057)
T PLN02919 700 AMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAG 779 (1057)
T ss_pred EECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEe
Confidence 778889999999865321000000 000000 01123467999999885554 456789999999865421100
Q ss_pred ---------eecCC--------CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeee
Q 037555 191 ---------LALPP--------FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRF 253 (298)
Q Consensus 191 ---------~~~~~--------~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 253 (298)
..+-. .-.....+++++++ .++++-..++.|++||..++.............. .-
T Consensus 780 g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-----~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~---dG 851 (1057)
T PLN02919 780 GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-----QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFK---DG 851 (1057)
T ss_pred cccccCcccccccCCCCchhhhhccCCceeeEeCCC-----cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCC---CC
Confidence 00000 01124688888887 6888888899999999876532111000000000 00
Q ss_pred ccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 254 DPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 254 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
....+.-.....|++++++ +++++-+.++.|++||++
T Consensus 852 ~~~~a~l~~P~GIavd~dG-------~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 852 KALKAQLSEPAGLALGENG-------RLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred cccccccCCceEEEEeCCC-------CEEEEECCCCEEEEEECC
Confidence 0011223456789999999 889999999999999974
No 272
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=2.7e-08 Score=84.07 Aligned_cols=172 Identities=14% Similarity=0.126 Sum_probs=103.2
Q ss_pred eEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC-CC--eEEEEEeccCCCCccceeeeEEeeccCCceEEEE
Q 037555 83 AEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR-DR--QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS 159 (298)
Q Consensus 83 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 159 (298)
..|.++|...... +.+..+...+....|+|||+.|+..+. ++ .|.+||+..+. ...+. ...+......
T Consensus 198 ~~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~-----~~~lt---~~~g~~~~~~ 268 (448)
T PRK04792 198 YQLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV-----REKVT---SFPGINGAPR 268 (448)
T ss_pred eEEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC-----eEEec---CCCCCcCCee
Confidence 4677888764433 445556778899999999998877654 33 57788876532 11222 2223345689
Q ss_pred EccCCCEEEE-eeCCCe--EEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee-cCCc--EEEEEeee
Q 037555 160 WNPFGHEFAT-GSRDKT--VKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM-ESGV--IELWSISV 233 (298)
Q Consensus 160 ~~~~~~~l~~-~~~dg~--i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~-~dg~--i~vwd~~~ 233 (298)
|+|+++.|+. .+.+|. |.++|+.+++.. .+..+.......+|+|++ ..|+..+ .++. |+++|+.+
T Consensus 269 wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG-----~~I~f~s~~~g~~~Iy~~dl~~ 339 (448)
T PRK04792 269 FSPDGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDG-----KSLIFTSERGGKPQIYRVNLAS 339 (448)
T ss_pred ECCCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCC-----CEEEEEECCCCCceEEEEECCC
Confidence 9999998765 455664 777888776542 333344556788999998 4555444 4444 55555544
Q ss_pred cccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC-CCcEEEeEe
Q 037555 234 NRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA-DNTVRVFQV 296 (298)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~iw~~ 296 (298)
++ ...+. ..+ ......+|+||+ .+|+..+. ++..+||-+
T Consensus 340 g~--------------~~~Lt-~~g--~~~~~~~~SpDG-------~~l~~~~~~~g~~~I~~~ 379 (448)
T PRK04792 340 GK--------------VSRLT-FEG--EQNLGGSITPDG-------RSMIMVNRTNGKFNIARQ 379 (448)
T ss_pred CC--------------EEEEe-cCC--CCCcCeeECCCC-------CEEEEEEecCCceEEEEE
Confidence 31 11221 111 223456899999 56655543 455555543
No 273
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.13 E-value=5e-07 Score=70.46 Aligned_cols=209 Identities=10% Similarity=0.085 Sum_probs=138.1
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC-ceeeec--ccccccc----------EEEEEEcCCCCEEEEEeC
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS-WKAMGR--LQSHSLT----------VTQIRFSHDDNLLLSVSR 123 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~-~~~~~~--~~~~~~~----------v~~~~~~~~~~~l~~~~~ 123 (298)
.+.+-++++++|++|+++.. ..|.|.++.++. |..... +..|.+. +....+.|+++++++...
T Consensus 89 ~~p~yvsvd~~g~~vf~AnY----~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL 164 (346)
T COG2706 89 SPPCYVSVDEDGRFVFVANY----HSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL 164 (346)
T ss_pred CCCeEEEECCCCCEEEEEEc----cCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec
Confidence 34488999999999999985 468999999865 332211 2225544 889999999999988764
Q ss_pred -CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-CCeEEEEEccCC-cceeeeeecC------
Q 037555 124 -DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-DKTVKIWAVENK-SSVKQILALP------ 194 (298)
Q Consensus 124 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~-~~~~~~~~~~------ 194 (298)
--.|.+|++..+..... ....+ .....-+.|.|+|++++.+.... +++|.+|..... .....++.+.
T Consensus 165 G~Dri~~y~~~dg~L~~~---~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF 240 (346)
T COG2706 165 GTDRIFLYDLDDGKLTPA---DPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDF 240 (346)
T ss_pred CCceEEEEEcccCccccc---ccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcccc
Confidence 23688999985432111 11122 33455688999999998887764 889999998874 2223222222
Q ss_pred CCCCceEEEEEeeccccCCccEEEEeec-CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCC
Q 037555 195 PFNSSVTALSWVGLDRQKNHGFLAVGME-SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEK 273 (298)
Q Consensus 195 ~~~~~v~~~~~~~~~~~~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 273 (298)
........+..++++ .+|.++.. ...|.+|.+.... ..+..+.....+......+.|++.+
T Consensus 241 ~g~~~~aaIhis~dG-----rFLYasNRg~dsI~~f~V~~~~------------g~L~~~~~~~teg~~PR~F~i~~~g- 302 (346)
T COG2706 241 TGTNWAAAIHISPDG-----RFLYASNRGHDSIAVFSVDPDG------------GKLELVGITPTEGQFPRDFNINPSG- 302 (346)
T ss_pred CCCCceeEEEECCCC-----CEEEEecCCCCeEEEEEEcCCC------------CEEEEEEEeccCCcCCccceeCCCC-
Confidence 123456788899998 67777653 3468888776431 2222222223355557889999998
Q ss_pred CCCCcceEEEeeeCC-CcEEEeEec
Q 037555 274 PKNSRTMQLASCGAD-NTVRVFQVN 297 (298)
Q Consensus 274 ~~~~~~~~l~s~~~d-~~i~iw~~~ 297 (298)
++|+++..+ ..|.+|..+
T Consensus 303 ------~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 303 ------RFLIAANQKSDNITVFERD 321 (346)
T ss_pred ------CEEEEEccCCCcEEEEEEc
Confidence 788777754 468877653
No 274
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=9.7e-10 Score=84.55 Aligned_cols=168 Identities=13% Similarity=0.237 Sum_probs=121.8
Q ss_pred ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEc
Q 037555 82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN 161 (298)
Q Consensus 82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 161 (298)
+-.|-+-+++++.. +.|. ..+.|.++.|...+++++.|..+|.|..+|++....+. ..+... ..|...|+++..-
T Consensus 233 sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~--~~~a~r-lyh~Ssvtslq~L 307 (425)
T KOG2695|consen 233 SQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGN--GWCAQR-LYHDSSVTSLQIL 307 (425)
T ss_pred cceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCC--CcceEE-EEcCcchhhhhhh
Confidence 67788889887643 4455 67789999999989999999999999999999864433 222333 3588999999877
Q ss_pred c-CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccccccc
Q 037555 162 P-FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVS 240 (298)
Q Consensus 162 ~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~ 240 (298)
. ++++|++.+-+|+|++||++.-++...+..+.+| |+..+..|..-.+.+..++++++|...+||.++.+
T Consensus 308 q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGH---vN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g------ 378 (425)
T KOG2695|consen 308 QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGH---VNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG------ 378 (425)
T ss_pred ccccceEeeccCcCceeEeeehhhhcccceeeeecc---cccccccccccccccceEEEccCeeEEEEEecccC------
Confidence 7 7889999999999999999987774444466655 44444444443344478999999999999999987
Q ss_pred CCCCCCcceeeeec-cCCcccceEEEEEeec
Q 037555 241 TPAPSTANIIIRFD-PFACHVAAVNRMAWKT 270 (298)
Q Consensus 241 ~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~ 270 (298)
..+..+. +.......+.+++|..
T Consensus 379 -------hLl~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 379 -------HLLCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred -------ceeeccCCCCccccccccceehhc
Confidence 4433322 1223344567777764
No 275
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.12 E-value=4.8e-10 Score=91.57 Aligned_cols=177 Identities=15% Similarity=0.181 Sum_probs=129.2
Q ss_pred eeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCe
Q 037555 96 MGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKT 175 (298)
Q Consensus 96 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 175 (298)
+..+.+|...|..++--.+.+-+++++.|.++++|.++....+.....+..++..|..+|..+.|-.+-++++++ ||-
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~g 805 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGG 805 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCc
Confidence 456789999999998877888999999999999999986554433345667788999999999999888777755 788
Q ss_pred EEEEEccCCcceeeeeecCCCCCceEEEEEeec-cccCCccEEEEe-ecCCcEEEEEeeecccccccCCCCCCcceeeee
Q 037555 176 VKIWAVENKSSVKQILALPPFNSSVTALSWVGL-DRQKNHGFLAVG-MESGVIELWSISVNRTNDVSTPAPSTANIIIRF 253 (298)
Q Consensus 176 i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 253 (298)
|++||.--++.+..+..-+ ..+.+..+...++ .+ .+++.| +...+|+++|.+..+. .+...+
T Consensus 806 iHlWDPFigr~Laq~~dap-k~~a~~~ikcl~nv~~----~iliAgcsaeSTVKl~DaRsce~-----------~~E~kV 869 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAP-KEGAGGNIKCLENVDR----HILIAGCSAESTVKLFDARSCEW-----------TCELKV 869 (1034)
T ss_pred ceeecccccchhHhhhcCc-ccCCCceeEecccCcc----hheeeeccchhhheeeecccccc-----------eeeEEe
Confidence 9999987776655332222 2333444444443 21 344444 6788999999987632 333334
Q ss_pred ccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 254 DPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 254 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
....+....+.+++..+.| ++|+.+-.+|+|-+.|.+
T Consensus 870 cna~~Pna~~R~iaVa~~G-------N~lAa~LSnGci~~LDaR 906 (1034)
T KOG4190|consen 870 CNAPGPNALTRAIAVADKG-------NKLAAALSNGCIAILDAR 906 (1034)
T ss_pred ccCCCCchheeEEEeccCc-------chhhHHhcCCcEEEEecC
Confidence 3345667789999999999 899999899999887754
No 276
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.12 E-value=1.9e-09 Score=84.46 Aligned_cols=162 Identities=15% Similarity=0.186 Sum_probs=108.0
Q ss_pred ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee----eeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555 58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA----MGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQ 133 (298)
Q Consensus 58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 133 (298)
.+..+..++.+++||.+- .+....++++..... +.... -...-+++.|..+......+..-|.++-+|+-
T Consensus 64 a~~~~~~s~~~~llAv~~-----~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~ 137 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVAT-----SSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDIL 137 (390)
T ss_pred cccccccCCCceEEEEEe-----CCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeee
Confidence 344556678888888883 356665666543322 22111 22233455555555555554444444444433
Q ss_pred cCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCC
Q 037555 134 RTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKN 213 (298)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (298)
.... .......+|-.-++.++|+||+++++++..|..|++-.......+..+ .-+|..-|..++..++.
T Consensus 138 s~~~-----~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf--clGH~eFVS~isl~~~~---- 206 (390)
T KOG3914|consen 138 SADS-----GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF--CLGHKEFVSTISLTDNY---- 206 (390)
T ss_pred cccc-----cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh--ccccHhheeeeeeccCc----
Confidence 2111 112344578999999999999999999999999999877765554422 23699999999999875
Q ss_pred ccEEEEeecCCcEEEEEeeeccccc
Q 037555 214 HGFLAVGMESGVIELWSISVNRTND 238 (298)
Q Consensus 214 ~~~l~~g~~dg~i~vwd~~~~~~~~ 238 (298)
.|++|+.|++|++||+.+++...
T Consensus 207 --~LlS~sGD~tlr~Wd~~sgk~L~ 229 (390)
T KOG3914|consen 207 --LLLSGSGDKTLRLWDITSGKLLD 229 (390)
T ss_pred --eeeecCCCCcEEEEecccCCccc
Confidence 68999999999999999987653
No 277
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.10 E-value=4.2e-10 Score=83.22 Aligned_cols=152 Identities=15% Similarity=0.224 Sum_probs=99.4
Q ss_pred cCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-----CCeEEEEEccCCcc
Q 037555 112 SHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-----DKTVKIWAVENKSS 186 (298)
Q Consensus 112 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~~wd~~~~~~ 186 (298)
+-.++.++++..||.+.+++.+.. .............-.+.+....++.+.++.- -+..+.|+++..+.
T Consensus 98 s~~~t~V~~~~~dg~~~v~s~~~~------~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t 171 (319)
T KOG4714|consen 98 TMTDNRVCIGYADGSLAVFSTDKD------LALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKT 171 (319)
T ss_pred cccCCceEecCCCceEEEEechHH------HhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccc
Confidence 334667999999999999998752 1111111111111122233334455544431 23456676665443
Q ss_pred eeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEE
Q 037555 187 VKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRM 266 (298)
Q Consensus 187 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 266 (298)
.. .-......|.+++-+|... .++++|++||.+-+||.++... ....+..|..+|+-+
T Consensus 172 ~~---~~~~~~~~v~~l~~hp~qq----~~v~cgt~dg~~~l~d~rn~~~---------------p~S~l~ahk~~i~eV 229 (319)
T KOG4714|consen 172 LI---PSKKALDAVTALCSHPAQQ----HLVCCGTDDGIVGLWDARNVAM---------------PVSLLKAHKAEIWEV 229 (319)
T ss_pred cc---ccccccccchhhhCCcccc----cEEEEecCCCeEEEEEcccccc---------------hHHHHHHhhhhhhhe
Confidence 22 1111233489999999774 7899999999999999997522 222266799999999
Q ss_pred EeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 267 AWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 267 ~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.|+|..+ ..|+++++||.+..||-+
T Consensus 230 ~FHpk~p------~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 230 HFHPKNP------EHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred eccCCCc------hheeEecCCCcEEEEcCC
Confidence 9999875 899999999999999864
No 278
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.09 E-value=3.3e-09 Score=91.34 Aligned_cols=176 Identities=14% Similarity=0.122 Sum_probs=131.2
Q ss_pred ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEc
Q 037555 82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN 161 (298)
Q Consensus 82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 161 (298)
...+..+|+++.+..+...-....|.-++. +++.+.+|...|+|.+-|.++ .+.+.++..|.+.|..+..
T Consensus 156 Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s-------~~~iht~~aHs~siSDfDv- 225 (1118)
T KOG1275|consen 156 QEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNS-------FETIHTFDAHSGSISDFDV- 225 (1118)
T ss_pred hhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCc-------Cceeeeeeccccceeeeec-
Confidence 556777888877776655544444555544 678999999999999999988 7889999999999977665
Q ss_pred cCCCEEEEeeC---------CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEee
Q 037555 162 PFGHEFATGSR---------DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSIS 232 (298)
Q Consensus 162 ~~~~~l~~~~~---------dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~ 232 (298)
.|+.|++++. |..|+|||+|..+.+.++ . ......-+.|+|.-. ..+++.+..|...+-|..
T Consensus 226 -~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI---~-~~~~P~flrf~Psl~----t~~~V~S~sGq~q~vd~~ 296 (1118)
T KOG1275|consen 226 -QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI---Q-FPYGPQFLRFHPSLT----TRLAVTSQSGQFQFVDTA 296 (1118)
T ss_pred -cCCeEEEeecccccccccccchhhhhhhhhhhccCCc---c-cccCchhhhhccccc----ceEEEEecccceeecccc
Confidence 5999999985 556899999998877643 2 222235678889775 788999999999999854
Q ss_pred ecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555 233 VNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ 295 (298)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~ 295 (298)
+-..+. -.+..+. .....+..+++++++ ..|+.+..+|.|.+|.
T Consensus 297 ~lsNP~---------~~~~~v~---p~~s~i~~fDiSsn~-------~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 297 TLSNPP---------AGVKMVN---PNGSGISAFDISSNG-------DALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccCCCc---------cceeEEc---cCCCcceeEEecCCC-------ceEEEecccCcEeeec
Confidence 332111 1112222 234559999999999 8999999999999995
No 279
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.09 E-value=8.8e-08 Score=87.04 Aligned_cols=203 Identities=17% Similarity=0.275 Sum_probs=126.9
Q ss_pred cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcC---------------C--------ceeeecccc---------
Q 037555 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVG---------------S--------WKAMGRLQS--------- 101 (298)
Q Consensus 54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~---------------~--------~~~~~~~~~--------- 101 (298)
.-...|.|++||||+..|+... .+++|.+..-. . |+...+|+|
T Consensus 118 ~vd~GI~a~~WSPD~Ella~vT-----~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~ 192 (928)
T PF04762_consen 118 SVDSGILAASWSPDEELLALVT-----GEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQ 192 (928)
T ss_pred EEcCcEEEEEECCCcCEEEEEe-----CCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhh
Confidence 3467899999999999999884 36677665421 0 111112211
Q ss_pred ---------------ccccEEEEEEcCCCCEEEEEeC---C---CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEE
Q 037555 102 ---------------HSLTVTQIRFSHDDNLLLSVSR---D---RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW 160 (298)
Q Consensus 102 ---------------~~~~v~~~~~~~~~~~l~~~~~---d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 160 (298)
+...-..+.|-.||.++|+.+. . ..++||+-+ +.+........+--..++|
T Consensus 193 ~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re--------G~L~stSE~v~gLe~~l~W 264 (928)
T PF04762_consen 193 LRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE--------GELQSTSEPVDGLEGALSW 264 (928)
T ss_pred ccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC--------ceEEeccccCCCccCCccC
Confidence 1223457889999999998875 2 578899865 3333333333444467899
Q ss_pred ccCCCEEEEeeC---CCeEEEEEccCCcceeeeeecC--CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecc
Q 037555 161 NPFGHEFATGSR---DKTVKIWAVENKSSVKQILALP--PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNR 235 (298)
Q Consensus 161 ~~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 235 (298)
.|.|++||+... ...|.+|.-. +..-..+ .+. .....|..+.|++++ .+|+.-..|. |.+|-..+..
T Consensus 265 rPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF-~l~~~~~~~~v~~l~Wn~ds-----~iLAv~~~~~-vqLWt~~NYH 336 (928)
T PF04762_consen 265 RPSGNLIASSQRLPDRHDVVFFERN-GLRHGEF-TLRFDPEEEKVIELAWNSDS-----EILAVWLEDR-VQLWTRSNYH 336 (928)
T ss_pred CCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeE-ecCCCCCCceeeEEEECCCC-----CEEEEEecCC-ceEEEeeCCE
Confidence 999999998864 3346666543 3322222 222 356779999999999 7888877655 9999887652
Q ss_pred cccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 236 TNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
. -.-..+. +. ....+..+.|+|..+ ..|.....+|.+..+++
T Consensus 337 W-----------YLKqei~-~~-~~~~~~~~~Wdpe~p------~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 337 W-----------YLKQEIR-FS-SSESVNFVKWDPEKP------LRLHVLTSNGQYEIYDF 378 (928)
T ss_pred E-----------EEEEEEE-cc-CCCCCCceEECCCCC------CEEEEEecCCcEEEEEE
Confidence 1 1111111 11 223344588998763 56666666677766554
No 280
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=2e-08 Score=82.14 Aligned_cols=154 Identities=12% Similarity=0.210 Sum_probs=110.3
Q ss_pred EEEEEcCCCC-EEEeEecc--C----CCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEE--eCCCeEEEE
Q 037555 60 FSLCCDHQGK-LVASSCKA--Q----STAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSV--SRDRQFSVF 130 (298)
Q Consensus 60 ~~~~~s~~~~-~l~~~~~~--~----~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~iw 130 (298)
..+.|++-|+ +|+.++.| . .....++++.+++.....-.+. ..++|+++.|+|+++-++++ -.-..+.||
T Consensus 221 vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtif 299 (566)
T KOG2315|consen 221 VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIF 299 (566)
T ss_pred eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEE
Confidence 3677887666 33333331 1 1234578888888333333333 58999999999999876654 456789999
Q ss_pred EeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC---CeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555 131 AIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD---KTVKIWAVENKSSVKQILALPPFNSSVTALSWVG 207 (298)
Q Consensus 131 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (298)
|++ ..++..+ ..++-+++-|+|.|++++.++-+ |.+-+||..+.+.+. .+... .-+-+.|+|
T Consensus 300 nlr--------~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~---~~~a~--~tt~~eW~P 364 (566)
T KOG2315|consen 300 NLR--------GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIA---KFKAA--NTTVFEWSP 364 (566)
T ss_pred cCC--------CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcc---ccccC--CceEEEEcC
Confidence 988 4455544 35677889999999999888754 789999999977766 54433 345689999
Q ss_pred ccccCCccEEEEeec------CCcEEEEEeeec
Q 037555 208 LDRQKNHGFLAVGME------SGVIELWSISVN 234 (298)
Q Consensus 208 ~~~~~~~~~l~~g~~------dg~i~vwd~~~~ 234 (298)
+| ++++|++. |+.++||++...
T Consensus 365 dG-----e~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 365 DG-----EYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred CC-----cEEEEEeccccEEecCCeEEEEecCc
Confidence 99 78888764 678999998643
No 281
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=1.8e-10 Score=98.73 Aligned_cols=162 Identities=15% Similarity=0.119 Sum_probs=120.0
Q ss_pred ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCC--
Q 037555 48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDR-- 125 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-- 125 (298)
..+.|+.|....+|++|+.+.++|+.|+. .|.|+++++.+|.......+|.++|+-+.=+.+|..+++.+.-.
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~-----~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSH-----AGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeec-----cceEEEEEccCccccccccccccccccccccCCcceeeeeccccCc
Confidence 45677889999999999999999999954 89999999999999999999999999999999998777665433
Q ss_pred eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeee-cCCCCCceEEEE
Q 037555 126 QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILA-LPPFNSSVTALS 204 (298)
Q Consensus 126 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~~~~v~~~~ 204 (298)
...+|++... ......+ ..-.++.|+.....-+.|.......+||+.+...+..+.+ ..+.+..-.+..
T Consensus 1168 lsaLW~~~s~------~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~ 1237 (1516)
T KOG1832|consen 1168 LSALWDASST------GGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAH 1237 (1516)
T ss_pred hHHHhccccc------cCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccc
Confidence 5678998752 2223333 2346788887655555566556789999999887663211 122333447788
Q ss_pred EeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555 205 WVGLDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 205 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
|+|+. .+++ .|| .+||++..
T Consensus 1238 FsP~D-----~LIl---ndG--vLWDvR~~ 1257 (1516)
T KOG1832|consen 1238 FSPCD-----TLIL---NDG--VLWDVRIP 1257 (1516)
T ss_pred cCCCc-----ceEe---eCc--eeeeeccH
Confidence 99987 4554 455 47999876
No 282
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.05 E-value=1.1e-06 Score=70.71 Aligned_cols=217 Identities=7% Similarity=0.034 Sum_probs=130.3
Q ss_pred ceEEeccCCCceEEEEEcCCCCEEEeEec-----cCCCCceEEEEEEcCCceeeeccccc-------cccEEEEEEcCCC
Q 037555 48 ESHKLYGHGNELFSLCCDHQGKLVASSCK-----AQSTAAAEIWLWEVGSWKAMGRLQSH-------SLTVTQIRFSHDD 115 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~-----~~~~~d~~i~vw~~~~~~~~~~~~~~-------~~~v~~~~~~~~~ 115 (298)
.+.++..-..+- .+ ++|+++.|+++.. .++..+..|.+||..+++.+..+... ......++++|||
T Consensus 39 v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dg 116 (352)
T TIGR02658 39 VLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDN 116 (352)
T ss_pred EEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCC
Confidence 344444333333 24 9999999988864 00115789999999999988776632 1223478999999
Q ss_pred CEEEEEe-C-CCeEEEEEeccCCCCcc----------------------ceeeeE-Ee------eccCCceEE-------
Q 037555 116 NLLLSVS-R-DRQFSVFAIQRTGTGEI----------------------DYQLIA-RQ------EAHKRIIWS------- 157 (298)
Q Consensus 116 ~~l~~~~-~-dg~i~iwd~~~~~~~~~----------------------~~~~~~-~~------~~~~~~v~~------- 157 (298)
++|++.. . +..|.+.|+...+.... +..... .+ .....++..
T Consensus 117 k~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~ 196 (352)
T TIGR02658 117 KTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLI 196 (352)
T ss_pred CEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccc
Confidence 9988776 3 68899999876441110 000000 00 000001100
Q ss_pred --EEEcc-CCCEEEEeeCCCeEEEEEccCCc-----ceeeeeecC-----CCCCceEEEEEeeccccCCccEEEEee---
Q 037555 158 --CSWNP-FGHEFATGSRDKTVKIWAVENKS-----SVKQILALP-----PFNSSVTALSWVGLDRQKNHGFLAVGM--- 221 (298)
Q Consensus 158 --~~~~~-~~~~l~~~~~dg~i~~wd~~~~~-----~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~l~~g~--- 221 (298)
-.|.+ ++.++++... |.|.+.|+.... ....+ ... .......-+++++++ ..++...
T Consensus 197 ~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~-~~~~~~~~wrP~g~q~ia~~~dg-----~~lyV~~~~~ 269 (352)
T TIGR02658 197 NHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAF-TEAEKADGWRPGGWQQVAYHRAR-----DRIYLLADQR 269 (352)
T ss_pred cCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeec-cccccccccCCCcceeEEEcCCC-----CEEEEEecCC
Confidence 02234 6666665555 999999964432 21111 111 123344559999988 5555532
Q ss_pred -------cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcce-EEEeee-CCCcEE
Q 037555 222 -------ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTM-QLASCG-ADNTVR 292 (298)
Q Consensus 222 -------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~l~s~~-~d~~i~ 292 (298)
..+.|.++|..+. +.+..+. -...+..|+++||+ . +|++.. .++.|.
T Consensus 270 ~~~thk~~~~~V~ViD~~t~-------------kvi~~i~----vG~~~~~iavS~Dg-------kp~lyvtn~~s~~Vs 325 (352)
T TIGR02658 270 AKWTHKTASRFLFVVDAKTG-------------KRLRKIE----LGHEIDSINVSQDA-------KPLLYALSTGDKTLY 325 (352)
T ss_pred ccccccCCCCEEEEEECCCC-------------eEEEEEe----CCCceeeEEECCCC-------CeEEEEeCCCCCcEE
Confidence 1247999999877 5555554 24578999999999 5 666444 688899
Q ss_pred EeEec
Q 037555 293 VFQVN 297 (298)
Q Consensus 293 iw~~~ 297 (298)
+.|..
T Consensus 326 ViD~~ 330 (352)
T TIGR02658 326 IFDAE 330 (352)
T ss_pred EEECc
Confidence 99863
No 283
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.04 E-value=7.2e-10 Score=93.32 Aligned_cols=204 Identities=14% Similarity=0.268 Sum_probs=144.0
Q ss_pred CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCc-eeeeccc-cccccEEEEEEcCCC--CEEEEEeCCCeEEEEE
Q 037555 56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSW-KAMGRLQ-SHSLTVTQIRFSHDD--NLLLSVSRDRQFSVFA 131 (298)
Q Consensus 56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~-~~~~~~~-~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd 131 (298)
.+++.++..+|.|+-+|.++. - -+.+.|+... .+..-+. ...-.|-.+.|+|.. .+-++......-.+|+
T Consensus 24 ~~~~~a~si~p~grdi~lAsr-----~-gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwn 97 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASR-----Q-GLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWN 97 (1081)
T ss_pred cCcccceeeccccchhhhhhh-----c-CeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhh
Confidence 467889999999999998864 3 3666776532 2222222 112356778888843 2444444455566899
Q ss_pred eccCCCCccceeeeEEeeccCCceEEEEEccCC-CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555 132 IQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG-HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR 210 (298)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (298)
+..... ......+.+|...|+.+.|+|+. ..+++++.|-.+..||++...... .....-......+.|+...+
T Consensus 98 lA~ss~----~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~--ys~~~w~s~asqVkwnyk~p 171 (1081)
T KOG0309|consen 98 LAKSSS----NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPF--YSTSSWRSAASQVKWNYKDP 171 (1081)
T ss_pred hhcCCc----cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcce--eeeecccccCceeeecccCc
Confidence 876543 34455677899999999999965 578999999999999999866433 23333455667899998773
Q ss_pred cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCc
Q 037555 211 QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNT 290 (298)
Q Consensus 211 ~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~ 290 (298)
-+++.+....|++||.+.+. .++.. +++|...|+++.|+.-.. ..+.+++.|++
T Consensus 172 -----~vlasshg~~i~vwd~r~gs------------~pl~s---~K~~vs~vn~~~fnr~~~------s~~~s~~~d~t 225 (1081)
T KOG0309|consen 172 -----NVLASSHGNDIFVWDLRKGS------------TPLCS---LKGHVSSVNSIDFNRFKY------SEIMSSSNDGT 225 (1081)
T ss_pred -----chhhhccCCceEEEeccCCC------------cceEE---ecccceeeehHHHhhhhh------hhhcccCCCCc
Confidence 44555567789999999774 22233 446899999999987542 57899999999
Q ss_pred EEEeEec
Q 037555 291 VRVFQVN 297 (298)
Q Consensus 291 i~iw~~~ 297 (298)
|++||..
T Consensus 226 vkfw~y~ 232 (1081)
T KOG0309|consen 226 VKFWDYS 232 (1081)
T ss_pred eeeeccc
Confidence 9999864
No 284
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.00 E-value=8.9e-08 Score=71.57 Aligned_cols=146 Identities=14% Similarity=0.083 Sum_probs=104.1
Q ss_pred CceEEEEEEcCCceeeeccccccc--cEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeE-EeeccCCceEE
Q 037555 81 AAAEIWLWEVGSWKAMGRLQSHSL--TVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIA-RQEAHKRIIWS 157 (298)
Q Consensus 81 ~d~~i~vw~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~v~~ 157 (298)
.|.++++.+++.+... +..|.. .+.++.+++|++++++.+....|..|.++.... ..+. ......+.-.+
T Consensus 136 ndht~k~~~~~~~s~~--~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se-----y~~~~~~a~t~D~gF~ 208 (344)
T KOG4532|consen 136 NDHTGKTMVVSGDSNK--FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE-----YIENIYEAPTSDHGFY 208 (344)
T ss_pred CCcceeEEEEecCccc--ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccc-----eeeeeEecccCCCcee
Confidence 3777777777533221 122333 388999999999999999999999999987542 2222 33334445577
Q ss_pred EEEccCCCEEEEeeCCCeEEEEEccCCcceeee--eecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecc
Q 037555 158 CSWNPFGHEFATGSRDKTVKIWAVENKSSVKQI--LALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNR 235 (298)
Q Consensus 158 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 235 (298)
..|+.....||+++.||.+.|||++....+... .+-+.|.+.++.+.|++.+.. .+|+..-.-+.+.+.|+++..
T Consensus 209 ~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~l---DLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 209 NSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLL---DLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred eeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcc---eEEEEecCcceEEEEEcccCc
Confidence 889999999999999999999999976544311 123458899999999986531 355555556789999999875
Q ss_pred c
Q 037555 236 T 236 (298)
Q Consensus 236 ~ 236 (298)
.
T Consensus 286 ~ 286 (344)
T KOG4532|consen 286 N 286 (344)
T ss_pred e
Confidence 3
No 285
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.99 E-value=1.9e-09 Score=57.73 Aligned_cols=39 Identities=31% Similarity=0.420 Sum_probs=36.7
Q ss_pred ceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 037555 93 WKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFA 131 (298)
Q Consensus 93 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 131 (298)
++++.++.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467788999999999999999999999999999999997
No 286
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=1.1e-09 Score=84.23 Aligned_cols=147 Identities=16% Similarity=0.182 Sum_probs=102.9
Q ss_pred EEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcce--eeeeecCCC
Q 037555 119 LSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSV--KQILALPPF 196 (298)
Q Consensus 119 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~--~~~~~~~~~ 196 (298)
++.+.+-.+-+-++.++- .+.+. ..+.|.++.|...++++..|..+|.|..+|++....- .....+. |
T Consensus 228 fs~G~sqqv~L~nvetg~--------~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h 297 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGH--------QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-H 297 (425)
T ss_pred ecccccceeEEEEeeccc--------ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-c
Confidence 455556677777777531 22222 4567888999988999999999999999999975221 1111232 7
Q ss_pred CCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCC
Q 037555 197 NSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKN 276 (298)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 276 (298)
++.|+++..-.... .+|++.+.+|+|++||.+.. ++-..+..+.+|...-.-+-++-+.
T Consensus 298 ~Ssvtslq~Lq~s~----q~LmaS~M~gkikLyD~R~~-------------K~~~~V~qYeGHvN~~a~l~~~v~~---- 356 (425)
T KOG2695|consen 298 DSSVTSLQILQFSQ----QKLMASDMTGKIKLYDLRAT-------------KCKKSVMQYEGHVNLSAYLPAHVKE---- 356 (425)
T ss_pred Ccchhhhhhhcccc----ceEeeccCcCceeEeeehhh-------------hcccceeeeeccccccccccccccc----
Confidence 88899998777332 78999999999999999976 4433344466776544433333332
Q ss_pred CcceEEEeeeCCCcEEEeEec
Q 037555 277 SRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 277 ~~~~~l~s~~~d~~i~iw~~~ 297 (298)
++..++++|.|...|||.++
T Consensus 357 -eeg~I~s~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 357 -EEGSIFSVGDDCYTRIWSLD 376 (425)
T ss_pred -ccceEEEccCeeEEEEEecc
Confidence 23788999999999999975
No 287
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=7.5e-08 Score=81.97 Aligned_cols=138 Identities=12% Similarity=0.136 Sum_probs=108.7
Q ss_pred CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCC------------CEEEEEeC
Q 037555 56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDD------------NLLLSVSR 123 (298)
Q Consensus 56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~ 123 (298)
...-.++.|+|.| ++|.|+ ...|.+-|..+.+.++.+..|...|+.+.|.|-. -+|+++..
T Consensus 15 ~sN~~A~Dw~~~G-LiAygs------hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~ 87 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGS------HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADI 87 (1062)
T ss_pred cccccccccCccc-eEEEec------CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccc
Confidence 3446788999876 667775 5789999999999999999999999999998721 25778888
Q ss_pred CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc---CC-CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCc
Q 037555 124 DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP---FG-HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSS 199 (298)
Q Consensus 124 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 199 (298)
.|.|.+||+.. ...+..+..|..++..++|-+ +. ..|++-.....|.+|+..+++... ........
T Consensus 88 ~GrIil~d~~~-------~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~W---k~~ys~~i 157 (1062)
T KOG1912|consen 88 SGRIILVDFVL-------ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFW---KYDYSHEI 157 (1062)
T ss_pred cCcEEEEEehh-------hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceee---ccccCCcc
Confidence 99999999987 556677788889999999987 23 466777778899999999998766 44444455
Q ss_pred eEEEEEeeccc
Q 037555 200 VTALSWVGLDR 210 (298)
Q Consensus 200 v~~~~~~~~~~ 210 (298)
..++.+.|...
T Consensus 158 Ls~f~~DPfd~ 168 (1062)
T KOG1912|consen 158 LSCFRVDPFDS 168 (1062)
T ss_pred eeeeeeCCCCc
Confidence 66788888764
No 288
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.93 E-value=8.3e-09 Score=55.18 Aligned_cols=38 Identities=32% Similarity=0.639 Sum_probs=35.8
Q ss_pred eeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEE
Q 037555 143 QLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWA 180 (298)
Q Consensus 143 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd 180 (298)
+++..+.+|...|++++|+|++++|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788899999999999999999999999999999997
No 289
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.92 E-value=5.2e-06 Score=64.78 Aligned_cols=167 Identities=12% Similarity=0.220 Sum_probs=113.1
Q ss_pred ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcC-CceeeeccccccccEEEEEEcCCCCEEEEEeC---
Q 037555 48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVG-SWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR--- 123 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--- 123 (298)
+-+.|.|| -.||+||++|++.-.+.....|.|-|||.. +.+.+..+..|.-.-..+.+.||++.|+++..
T Consensus 48 ~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~ 121 (305)
T PF07433_consen 48 PGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIE 121 (305)
T ss_pred CCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCc
Confidence 34566666 469999999999977666678999999998 67888888888777888999999987777531
Q ss_pred ---------------CCeEEEEEeccCCCCccceeeeEE--e--eccCCceEEEEEccCCCEEEEeeCCCe-------EE
Q 037555 124 ---------------DRQFSVFAIQRTGTGEIDYQLIAR--Q--EAHKRIIWSCSWNPFGHEFATGSRDKT-------VK 177 (298)
Q Consensus 124 ---------------dg~i~iwd~~~~~~~~~~~~~~~~--~--~~~~~~v~~~~~~~~~~~l~~~~~dg~-------i~ 177 (298)
+..+.+.|..+ +.++.+ + ..|...|..+++.+++..++..-..|. |-
T Consensus 122 Thpd~GR~kLNl~tM~psL~~ld~~s-------G~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva 194 (305)
T PF07433_consen 122 THPDSGRAKLNLDTMQPSLVYLDARS-------GALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVA 194 (305)
T ss_pred cCcccCceecChhhcCCceEEEecCC-------CceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEE
Confidence 12333334333 333333 3 336678999999999877666654432 33
Q ss_pred EEEccCCcceeeee----ecCCCCCceEEEEEeeccccCCccEE-EEeecCCcEEEEEeeec
Q 037555 178 IWAVENKSSVKQIL----ALPPFNSSVTALSWVGLDRQKNHGFL-AVGMESGVIELWSISVN 234 (298)
Q Consensus 178 ~wd~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~l-~~g~~dg~i~vwd~~~~ 234 (298)
+++... .+..+. ........+-+|++++++ .++ +|+-..+.+.+||..++
T Consensus 195 ~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g-----~~ia~tsPrGg~~~~~d~~tg 249 (305)
T PF07433_consen 195 LHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDG-----RLIAVTSPRGGRVAVWDAATG 249 (305)
T ss_pred EEcCCC--cceeccCChHHHHhhCCceEEEEEeCCC-----CEEEEECCCCCEEEEEECCCC
Confidence 443322 222110 012345779999999988 455 45556788999999887
No 290
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.91 E-value=1.1e-05 Score=62.81 Aligned_cols=184 Identities=10% Similarity=0.102 Sum_probs=114.6
Q ss_pred eEEEEEc-CCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc-----ccccEEEEEEcCCCCEEEEEeCC--------
Q 037555 59 LFSLCCD-HQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS-----HSLTVTQIRFSHDDNLLLSVSRD-------- 124 (298)
Q Consensus 59 v~~~~~s-~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d-------- 124 (298)
...+++. +++.++++. .+.+.++|..+++....+.. .....+.+++.|+|++.++....
T Consensus 42 ~~G~~~~~~~g~l~v~~-------~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~ 114 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVAD-------SGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDP 114 (246)
T ss_dssp EEEEEEECTTSEEEEEE-------TTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGS
T ss_pred CceEEEEccCCEEEEEE-------cCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccc
Confidence 6677777 676666555 34456669888755433322 34678899999999987776544
Q ss_pred CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEE-eeCCCeEEEEEccCCcc-e---eeeeecCCCCCc
Q 037555 125 RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFAT-GSRDKTVKIWAVENKSS-V---KQILALPPFNSS 199 (298)
Q Consensus 125 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~wd~~~~~~-~---~~~~~~~~~~~~ 199 (298)
|.|..++.. . . .......-...+.++|+|+++.|+. -+..+.|..+++..... + ..+..+......
T Consensus 115 g~v~~~~~~-~-------~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~ 185 (246)
T PF08450_consen 115 GSVYRIDPD-G-------K-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGY 185 (246)
T ss_dssp EEEEEEETT-S-------E-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCE
T ss_pred cceEEECCC-C-------e-EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcC
Confidence 445555554 1 1 1222222345689999999987764 46678899999864332 2 222233333334
Q ss_pred eEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEee-cCCCCCCCc
Q 037555 200 VTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWK-THEKPKNSR 278 (298)
Q Consensus 200 v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~ 278 (298)
.-.+++..++ ++.++....+.|.+++.+ + +.+..+. + ....+++++|. ++..
T Consensus 186 pDG~~vD~~G-----~l~va~~~~~~I~~~~p~-G-------------~~~~~i~-~--p~~~~t~~~fgg~~~~----- 238 (246)
T PF08450_consen 186 PDGLAVDSDG-----NLWVADWGGGRIVVFDPD-G-------------KLLREIE-L--PVPRPTNCAFGGPDGK----- 238 (246)
T ss_dssp EEEEEEBTTS------EEEEEETTTEEEEEETT-S-------------CEEEEEE----SSSSEEEEEEESTTSS-----
T ss_pred CCcceEcCCC-----CEEEEEcCCCEEEEECCC-c-------------cEEEEEc-C--CCCCEEEEEEECCCCC-----
Confidence 7789999988 677777778999999977 4 4444443 2 23478999995 4442
Q ss_pred ceEEEeee
Q 037555 279 TMQLASCG 286 (298)
Q Consensus 279 ~~~l~s~~ 286 (298)
.+++|.+
T Consensus 239 -~L~vTta 245 (246)
T PF08450_consen 239 -TLYVTTA 245 (246)
T ss_dssp -EEEEEEB
T ss_pred -EEEEEeC
Confidence 5666653
No 291
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.90 E-value=2.5e-06 Score=64.71 Aligned_cols=165 Identities=17% Similarity=0.161 Sum_probs=108.8
Q ss_pred eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc-------ccccEEEEEEcCC------CCEEEEEeCCC
Q 037555 59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS-------HSLTVTQIRFSHD------DNLLLSVSRDR 125 (298)
Q Consensus 59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~-------~~~~v~~~~~~~~------~~~l~~~~~dg 125 (298)
-.-++||||+.+||.+ ...|+|+++|+... .+..+.. -...|..+.|.+- ...|++...+|
T Consensus 46 WRkl~WSpD~tlLa~a-----~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G 119 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYA-----ESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRG 119 (282)
T ss_pred heEEEECCCCcEEEEE-----cCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccc
Confidence 5689999999999999 55899999999743 3322221 2356677777552 12577777888
Q ss_pred eEEEEEeccCCCCccceeeeE--Eee-ccCCceEEEEEccCCCEEEEeeC----CC-------eEEEEEccCCccee---
Q 037555 126 QFSVFAIQRTGTGEIDYQLIA--RQE-AHKRIIWSCSWNPFGHEFATGSR----DK-------TVKIWAVENKSSVK--- 188 (298)
Q Consensus 126 ~i~iwd~~~~~~~~~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~~----dg-------~i~~wd~~~~~~~~--- 188 (298)
.++=|-+..+.... ..... .+. .+...|.++.++|..++|++|+. ++ -+..|.+-+..+-.
T Consensus 120 ~L~Sy~vs~gt~q~--y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v 197 (282)
T PF15492_consen 120 QLRSYLVSVGTNQG--YQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQV 197 (282)
T ss_pred eeeeEEEEcccCCc--ceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEc
Confidence 88888764322111 22222 222 24678999999999998888763 11 25667654422110
Q ss_pred -----------------eeee------cCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccc
Q 037555 189 -----------------QILA------LPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRT 236 (298)
Q Consensus 189 -----------------~~~~------~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~ 236 (298)
.+.. ....+..|..|..+|++ .+|++...+|.|.+|++.+-+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg-----~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 198 TSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDG-----SLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred cccCccccccccccceeeccceeeeeccccCCCceEEEEECCCC-----CEEEEEEcCCeEEEEecCcchh
Confidence 0000 01235678899999999 8999999999999999987643
No 292
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.87 E-value=1.3e-06 Score=70.56 Aligned_cols=144 Identities=13% Similarity=0.140 Sum_probs=113.7
Q ss_pred CCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCC-eEEEEEeccCCCCccceeee
Q 037555 67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDR-QFSVFAIQRTGTGEIDYQLI 145 (298)
Q Consensus 67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~ 145 (298)
+|.+++..+ .|+..|.+...+-.++ + +|...|.-..+..+++-++.|..|| .+-++|.+. ..+
T Consensus 331 ~Gd~ia~VS------RGkaFi~~~~~~~~iq-v-~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~--------~e~ 394 (668)
T COG4946 331 NGDYIALVS------RGKAFIMRPWDGYSIQ-V-GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG--------GEV 394 (668)
T ss_pred CCcEEEEEe------cCcEEEECCCCCeeEE-c-CCCCceEEEEEccCCcceEEeccCCceEEEEecCC--------ceE
Confidence 577888886 4778887766444333 2 3677788888888888899999999 899999985 234
Q ss_pred EEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCC-
Q 037555 146 ARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESG- 224 (298)
Q Consensus 146 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg- 224 (298)
+.+...-+.|.++..+|+|.+++++.....|.+.|+.+++... .-+...+-|+.+.|+|++ .+++-+-.+|
T Consensus 395 kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~---idkS~~~lItdf~~~~ns-----r~iAYafP~gy 466 (668)
T COG4946 395 KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRL---IDKSEYGLITDFDWHPNS-----RWIAYAFPEGY 466 (668)
T ss_pred EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeE---ecccccceeEEEEEcCCc-----eeEEEecCcce
Confidence 5556667889999999999999999988999999999988654 223355779999999999 7999887665
Q ss_pred ---cEEEEEeeec
Q 037555 225 ---VIELWSISVN 234 (298)
Q Consensus 225 ---~i~vwd~~~~ 234 (298)
.|+++|+..+
T Consensus 467 ~tq~Iklydm~~~ 479 (668)
T COG4946 467 YTQSIKLYDMDGG 479 (668)
T ss_pred eeeeEEEEecCCC
Confidence 6899999875
No 293
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=7.6e-08 Score=76.91 Aligned_cols=215 Identities=13% Similarity=0.074 Sum_probs=144.2
Q ss_pred cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC--c-eeeeccccccccEEEEEEcCCCCEEEEEeC-CCeEEE
Q 037555 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS--W-KAMGRLQSHSLTVTQIRFSHDDNLLLSVSR-DRQFSV 129 (298)
Q Consensus 54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i 129 (298)
-|.+.|+.+... -.+++.+++. ||.++.|.-.. + +.+..+..|-..|.+++.+-++.++.+.+. |..+++
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASl-----DGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kv 80 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASL-----DGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKV 80 (558)
T ss_pred cccceeeeEeee-hhheEEeeec-----chhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeE
Confidence 478888877655 3568888854 99999998643 2 345567789999999999999999999887 999999
Q ss_pred EEeccCCCCccceeeeE--EeeccCCceEEEEEccCC--CEEEEe-eCCCeEEEEEccCCcceeeeeecCCCCCceEEEE
Q 037555 130 FAIQRTGTGEIDYQLIA--RQEAHKRIIWSCSWNPFG--HEFATG-SRDKTVKIWAVENKSSVKQILALPPFNSSVTALS 204 (298)
Q Consensus 130 wd~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~--~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~ 204 (298)
+|+..-. .+. .+....+.+.. ..+|.. ..+++. ..++.+.++|-....+.... .-.-|..+|..+.
T Consensus 81 fDvEn~D-------minmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~-fkklH~sPV~~i~ 151 (558)
T KOG0882|consen 81 FDVENFD-------MINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY-FKKLHFSPVKKIR 151 (558)
T ss_pred EEeeccc-------hhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccce-ecccccCceEEEE
Confidence 9998732 221 12222222221 112211 133333 46799999998766543322 2335889999999
Q ss_pred EeeccccCCccEEEEeecCCcEEEEEeeecc-cccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEE
Q 037555 205 WVGLDRQKNHGFLAVGMESGVIELWSISVNR-TNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLA 283 (298)
Q Consensus 205 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 283 (298)
+.+.+ ..+++....|.|.-|...... .+.. .-.-..+....+..+..-.....++.|+|++ ..+.
T Consensus 152 y~qa~-----Ds~vSiD~~gmVEyWs~e~~~qfPr~--~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-------~qis 217 (558)
T KOG0882|consen 152 YNQAG-----DSAVSIDISGMVEYWSAEGPFQFPRT--NLNFELKHETDLYGFPKAKTEPTSFEFSPDG-------AQIS 217 (558)
T ss_pred eeccc-----cceeeccccceeEeecCCCcccCccc--cccccccccchhhcccccccCccceEEcccc-------Cccc
Confidence 99998 788888889999999887311 0000 0000111112222233456678899999999 8999
Q ss_pred eeeCCCcEEEeEec
Q 037555 284 SCGADNTVRVFQVN 297 (298)
Q Consensus 284 s~~~d~~i~iw~~~ 297 (298)
+-+.|..|+++++.
T Consensus 218 tl~~DrkVR~F~~K 231 (558)
T KOG0882|consen 218 TLNPDRKVRGFVFK 231 (558)
T ss_pred ccCcccEEEEEEec
Confidence 99999999998864
No 294
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=1.2e-06 Score=72.14 Aligned_cols=78 Identities=12% Similarity=0.229 Sum_probs=57.6
Q ss_pred CCCceEEEEEcCCCCEEEeEeccCCC------CceEEEEEEcCCceeeeccccc--cccE-EEEEEcCCCCEEEEEeCCC
Q 037555 55 HGNELFSLCCDHQGKLVASSCKAQST------AAAEIWLWEVGSWKAMGRLQSH--SLTV-TQIRFSHDDNLLLSVSRDR 125 (298)
Q Consensus 55 h~~~v~~~~~s~~~~~l~~~~~~~~~------~d~~i~vw~~~~~~~~~~~~~~--~~~v-~~~~~~~~~~~l~~~~~dg 125 (298)
|. .|.-+.|||+.++|++-+..... +...+.|||+.+|...+.|... ...+ .-+.||.|++++|--.. .
T Consensus 249 Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~ 326 (698)
T KOG2314|consen 249 HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-N 326 (698)
T ss_pred CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-c
Confidence 44 48899999999999998764322 3368999999999988887652 2222 34689999999887765 4
Q ss_pred eEEEEEecc
Q 037555 126 QFSVFAIQR 134 (298)
Q Consensus 126 ~i~iwd~~~ 134 (298)
.|.||+...
T Consensus 327 sisIyEtps 335 (698)
T KOG2314|consen 327 SISIYETPS 335 (698)
T ss_pred eEEEEecCc
Confidence 677887654
No 295
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.83 E-value=2e-05 Score=61.46 Aligned_cols=196 Identities=11% Similarity=0.029 Sum_probs=117.3
Q ss_pred EEEEcC-CCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEc-CCCCEEEEEeCCCeEEEEEeccCCCC
Q 037555 61 SLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFS-HDDNLLLSVSRDRQFSVFAIQRTGTG 138 (298)
Q Consensus 61 ~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~ 138 (298)
++.|.+ ++.++++- ...+.|..|+..+++... +.... ...+++. +++ .++.+...+. .++|+.+..
T Consensus 4 gp~~d~~~g~l~~~D-----~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g-~l~v~~~~~~-~~~d~~~g~-- 71 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVD-----IPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDG-RLYVADSGGI-AVVDPDTGK-- 71 (246)
T ss_dssp EEEEETTTTEEEEEE-----TTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTS-EEEEEETTCE-EEEETTTTE--
T ss_pred ceEEECCCCEEEEEE-----cCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCC-EEEEEEcCce-EEEecCCCc--
Confidence 578888 56666665 457899999998776533 22122 6677777 564 5555555444 555876632
Q ss_pred ccceeeeEEee--c-cCCceEEEEEccCCCEEEEeeCC--------CeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555 139 EIDYQLIARQE--A-HKRIIWSCSWNPFGHEFATGSRD--------KTVKIWAVENKSSVKQILALPPFNSSVTALSWVG 207 (298)
Q Consensus 139 ~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~l~~~~~d--------g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (298)
...+.... . .....+.+++.|+|++.++.... |.|..++.. ++... .. ..-...+.++|+|
T Consensus 72 ---~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~---~~-~~~~~pNGi~~s~ 143 (246)
T PF08450_consen 72 ---VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV---VA-DGLGFPNGIAFSP 143 (246)
T ss_dssp ---EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE---EE-EEESSEEEEEEET
T ss_pred ---EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE---Ee-cCcccccceEECC
Confidence 23333332 1 34567899999999977776543 456666666 33322 11 1234568999999
Q ss_pred ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC
Q 037555 208 LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA 287 (298)
Q Consensus 208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~ 287 (298)
++. .++++-+..+.|..+++....... .....+..+.......-.+++..++ ++.++.-.
T Consensus 144 dg~----~lyv~ds~~~~i~~~~~~~~~~~~---------~~~~~~~~~~~~~g~pDG~~vD~~G-------~l~va~~~ 203 (246)
T PF08450_consen 144 DGK----TLYVADSFNGRIWRFDLDADGGEL---------SNRRVFIDFPGGPGYPDGLAVDSDG-------NLWVADWG 203 (246)
T ss_dssp TSS----EEEEEETTTTEEEEEEEETTTCCE---------EEEEEEEE-SSSSCEEEEEEEBTTS--------EEEEEET
T ss_pred cch----heeecccccceeEEEeccccccce---------eeeeeEEEcCCCCcCCCcceEcCCC-------CEEEEEcC
Confidence 983 344566678889999987542100 1112222222233457889999988 77777767
Q ss_pred CCcEEEeEe
Q 037555 288 DNTVRVFQV 296 (298)
Q Consensus 288 d~~i~iw~~ 296 (298)
.+.|.+++.
T Consensus 204 ~~~I~~~~p 212 (246)
T PF08450_consen 204 GGRIVVFDP 212 (246)
T ss_dssp TTEEEEEET
T ss_pred CCEEEEECC
Confidence 788888763
No 296
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=4.8e-07 Score=71.44 Aligned_cols=83 Identities=11% Similarity=0.151 Sum_probs=69.2
Q ss_pred eEEeccCCCceEEEEEcCCCC-EEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCC-CEEEEEeCCCe
Q 037555 49 SHKLYGHGNELFSLCCDHQGK-LVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDD-NLLLSVSRDRQ 126 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~-~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~ 126 (298)
...+.+|...|..++|+|... ++..++ -+..|+|.|+++...+..+..+ ..+++++|.-|. ++|..|-..|.
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~as-----l~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~ 259 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLAS-----LGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGM 259 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeec-----cCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCce
Confidence 345567888899999999877 566664 3889999999999888888877 789999998855 57888888999
Q ss_pred EEEEEeccCCC
Q 037555 127 FSVFAIQRTGT 137 (298)
Q Consensus 127 i~iwd~~~~~~ 137 (298)
|.+||++.+..
T Consensus 260 VlvyD~R~~~~ 270 (463)
T KOG1645|consen 260 VLVYDMRQPEG 270 (463)
T ss_pred EEEEEccCCCc
Confidence 99999998654
No 297
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.77 E-value=3.7e-06 Score=68.54 Aligned_cols=198 Identities=11% Similarity=0.179 Sum_probs=129.9
Q ss_pred CceEEEEEcCC--CCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe-----------C
Q 037555 57 NELFSLCCDHQ--GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS-----------R 123 (298)
Q Consensus 57 ~~v~~~~~s~~--~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~ 123 (298)
..|....|+|. +..||.-..+......++++|.+..+..+.+..-....=..+.|.+.|++++.-- .
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg 253 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG 253 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence 56888889985 3445554333345688999999987666554333333335688999888665421 1
Q ss_pred CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee--CCCeEEEEEccCCcceeeeeecCCCCCceE
Q 037555 124 DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS--RDKTVKIWAVENKSSVKQILALPPFNSSVT 201 (298)
Q Consensus 124 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~ 201 (298)
...+.+++++... +.....-.++|...+|.|.++.|++.+ .+-.+.++|++.. ... .+ .+..-.
T Consensus 254 esnLyl~~~~e~~--------i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~---~~--Pe~~rN 319 (561)
T COG5354 254 ESNLYLLRITERS--------IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRF---YF--PEQKRN 319 (561)
T ss_pred cceEEEEeecccc--------cceeccccccceeeeecccCCceeEEecccccceeecccccc-eEE---ec--CCcccc
Confidence 2457777776421 222224578999999999998887766 5778999999875 222 22 344556
Q ss_pred EEEEeeccccCCccEEEEeec---CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCc
Q 037555 202 ALSWVGLDRQKNHGFLAVGME---SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSR 278 (298)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 278 (298)
.+.|+|.+ .+++.++- .|.|-+||..... .+...+. .....-+.|+|++
T Consensus 320 T~~fsp~~-----r~il~agF~nl~gni~i~~~~~rf------------~~~~~~~-----~~n~s~~~wspd~------ 371 (561)
T COG5354 320 TIFFSPHE-----RYILFAGFDNLQGNIEIFDPAGRF------------KVAGAFN-----GLNTSYCDWSPDG------ 371 (561)
T ss_pred cccccCcc-----cEEEEecCCccccceEEeccCCce------------EEEEEee-----cCCceEeeccCCc------
Confidence 78999998 57776554 4789999987541 2222321 2334557899999
Q ss_pred ceEEEeee------CCCcEEEeEec
Q 037555 279 TMQLASCG------ADNTVRVFQVN 297 (298)
Q Consensus 279 ~~~l~s~~------~d~~i~iw~~~ 297 (298)
.++.+.. .|..|+|||+.
T Consensus 372 -qF~~~~~ts~k~~~Dn~i~l~~v~ 395 (561)
T COG5354 372 -QFYDTDTTSEKLRVDNSIKLWDVY 395 (561)
T ss_pred -eEEEecCCCcccccCcceEEEEec
Confidence 6766553 37889999974
No 298
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=4.1e-07 Score=77.83 Aligned_cols=149 Identities=15% Similarity=0.224 Sum_probs=107.4
Q ss_pred CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEecc
Q 037555 55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQR 134 (298)
Q Consensus 55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 134 (298)
..+.++|++++ +++|+-| +-+|.|++++.+ +.. .+...|... ..+|.++++|+.||.|.|..+-+
T Consensus 38 ~~D~is~~av~--~~~~~~G-----tH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~ 102 (846)
T KOG2066|consen 38 QNDAISCCAVH--DKFFALG-----THRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFT 102 (846)
T ss_pred hhhHHHHHHhh--cceeeec-----cccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccC
Confidence 34567788876 6789999 458999999986 444 333335444 56899999999999999998876
Q ss_pred CCCCccceeeeEEeeccCCceEEEEEccC-----CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecc
Q 037555 135 TGTGEIDYQLIARQEAHKRIIWSCSWNPF-----GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLD 209 (298)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (298)
.. ....+ ....++.+++++|+ .+.+++|+..| +.++.-+-....... .+....++|.++.|..
T Consensus 103 ~~-------~~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~eG~I~~i~W~g-- 170 (846)
T KOG2066|consen 103 DD-------EITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGEGPIHSIKWRG-- 170 (846)
T ss_pred Cc-------cceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eeecCccceEEEEecC--
Confidence 32 23333 24578999999997 46899999888 776654322222211 3455678999999987
Q ss_pred ccCCccEEEEeecCCcEEEEEeeeccc
Q 037555 210 RQKNHGFLAVGMESGVIELWSISVNRT 236 (298)
Q Consensus 210 ~~~~~~~l~~g~~dg~i~vwd~~~~~~ 236 (298)
+++|=++.+| |+|||+.+.+.
T Consensus 171 -----~lIAWand~G-v~vyd~~~~~~ 191 (846)
T KOG2066|consen 171 -----NLIAWANDDG-VKVYDTPTRQR 191 (846)
T ss_pred -----cEEEEecCCC-cEEEeccccce
Confidence 6788888777 99999987743
No 299
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.76 E-value=5.8e-07 Score=76.79 Aligned_cols=108 Identities=17% Similarity=0.223 Sum_probs=82.1
Q ss_pred EEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC----------CCeEEEEEeccCCCCc
Q 037555 70 LVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR----------DRQFSVFAIQRTGTGE 139 (298)
Q Consensus 70 ~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~ 139 (298)
++|.| ...|+|.++|+.++.....+..|+..|.++.|..... |++.+. -+.+.+-|++++..
T Consensus 439 LvAvG-----T~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss-lvSfsys~~n~~sg~vrN~l~vtdLrtGls-- 510 (1062)
T KOG1912|consen 439 LVAVG-----TNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS-LVSFSYSHVNSASGGVRNDLVVTDLRTGLS-- 510 (1062)
T ss_pred eEEee-----cCCceEEEEEecchhhhhhhcccccceeeeeecccee-EEEeeeccccccccceeeeEEEEEcccccc--
Confidence 46666 6799999999999998899999999999999976544 333322 24566778887542
Q ss_pred cceeeeEE-eeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCccee
Q 037555 140 IDYQLIAR-QEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVK 188 (298)
Q Consensus 140 ~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 188 (298)
+..+. .+..+.+|..+..+..+++++....+.-+.+||+++...++
T Consensus 511 ---k~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr 557 (1062)
T KOG1912|consen 511 ---KRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLR 557 (1062)
T ss_pred ---cccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHH
Confidence 22222 23456799999999999999999999999999998755443
No 300
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.76 E-value=1.2e-05 Score=62.71 Aligned_cols=201 Identities=14% Similarity=0.139 Sum_probs=126.5
Q ss_pred eEEEEEcCCCC-EEEeEeccCCCCceEEEEEEcCCceeeeccccccccE--EEEEEcCCCCEEEEEeC-----CCeEEEE
Q 037555 59 LFSLCCDHQGK-LVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTV--TQIRFSHDDNLLLSVSR-----DRQFSVF 130 (298)
Q Consensus 59 v~~~~~s~~~~-~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-----dg~i~iw 130 (298)
...++.+|... .++.+-+ ......+||..+++....+....+.- -.-.|++||++|++.-. .|.|-||
T Consensus 7 gH~~a~~p~~~~avafaRR----PG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARR----PGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred ccceeeCCCCCeEEEEEeC----CCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEE
Confidence 44677888544 4444432 34578899999998876665322221 23679999999998643 5899999
Q ss_pred EeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC------------------CCeEEEEEccCCcceeeeee
Q 037555 131 AIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR------------------DKTVKIWAVENKSSVKQILA 192 (298)
Q Consensus 131 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------------------dg~i~~wd~~~~~~~~~~~~ 192 (298)
|.... ...+.++..+.-.-..+.+.|++..|+++-. +..+...|..+++.+... .
T Consensus 83 d~~~~------~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~-~ 155 (305)
T PF07433_consen 83 DAARG------YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQV-E 155 (305)
T ss_pred ECcCC------cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeee-e
Confidence 99832 6667777777666678889999987777632 123455566666655533 3
Q ss_pred c--CCCCCceEEEEEeeccccCCccEEEEeec-CC-------cEEEEEeeecccccccCCCCCCcceeeeec----cCCc
Q 037555 193 L--PPFNSSVTALSWVGLDRQKNHGFLAVGME-SG-------VIELWSISVNRTNDVSTPAPSTANIIIRFD----PFAC 258 (298)
Q Consensus 193 ~--~~~~~~v~~~~~~~~~~~~~~~~l~~g~~-dg-------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 258 (298)
+ ..|+..|+.+++.+++ .++.+.+ .| -|-+++... .+..+. ....
T Consensus 156 Lp~~~~~lSiRHLa~~~~G------~V~~a~Q~qg~~~~~~PLva~~~~g~---------------~~~~~~~p~~~~~~ 214 (305)
T PF07433_consen 156 LPPDLHQLSIRHLAVDGDG------TVAFAMQYQGDPGDAPPLVALHRRGG---------------ALRLLPAPEEQWRR 214 (305)
T ss_pred cCccccccceeeEEecCCC------cEEEEEecCCCCCccCCeEEEEcCCC---------------cceeccCChHHHHh
Confidence 4 3366789999999987 3444432 22 122222211 011110 0122
Q ss_pred ccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 259 HVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 259 ~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
-..-|-+|++++++. ...+|+-.-+.+.+||..
T Consensus 215 l~~Y~gSIa~~~~g~------~ia~tsPrGg~~~~~d~~ 247 (305)
T PF07433_consen 215 LNGYIGSIAADRDGR------LIAVTSPRGGRVAVWDAA 247 (305)
T ss_pred hCCceEEEEEeCCCC------EEEEECCCCCEEEEEECC
Confidence 346788999999982 344666688899999854
No 301
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.75 E-value=3.2e-07 Score=79.55 Aligned_cols=152 Identities=14% Similarity=0.230 Sum_probs=113.4
Q ss_pred ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC---------CCeEE
Q 037555 58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR---------DRQFS 128 (298)
Q Consensus 58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~ 128 (298)
.|+-+.. +++.+.+| ...|+|.+-|..+.+.++++.+|++.|.++.. .|++|++|+. |..|+
T Consensus 179 ~v~imR~--Nnr~lf~G-----~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~Fvk 249 (1118)
T KOG1275|consen 179 GVTIMRY--NNRNLFCG-----DTRGTVFLRDPNSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVK 249 (1118)
T ss_pred ceEEEEe--cCcEEEee-----cccceEEeecCCcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhh
Confidence 3444443 57888888 56899999999999999999999999987665 6899999975 45689
Q ss_pred EEEeccCCCCccceeeeEEeeccCCceEEEEEccC-CCEEEEeeCCCeEEEEEccCC-cceeeeeecCCCCCceEEEEEe
Q 037555 129 VFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF-GHEFATGSRDKTVKIWAVENK-SSVKQILALPPFNSSVTALSWV 206 (298)
Q Consensus 129 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~~ 206 (298)
|||++. .+.+..+.-+.++ .-+.|+|. ...+++++..|...+-|..+. .+...+..+......+..+.++
T Consensus 250 VYDLRm-------mral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiS 321 (1118)
T KOG1275|consen 250 VYDLRM-------MRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDIS 321 (1118)
T ss_pred hhhhhh-------hhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEec
Confidence 999997 4444444434333 55778884 467888899999999884322 2212222334455669999999
Q ss_pred eccccCCccEEEEeecCCcEEEEEe
Q 037555 207 GLDRQKNHGFLAVGMESGVIELWSI 231 (298)
Q Consensus 207 ~~~~~~~~~~l~~g~~dg~i~vwd~ 231 (298)
+.+ +.++.|..+|.|.+|.-
T Consensus 322 sn~-----~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 322 SNG-----DALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CCC-----ceEEEecccCcEeeecC
Confidence 998 89999999999999973
No 302
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.73 E-value=1.1e-07 Score=80.41 Aligned_cols=165 Identities=13% Similarity=0.212 Sum_probs=123.4
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc--------ceeeeEEeeccCCceEEEEEccCCCEEEEeeCCC
Q 037555 103 SLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI--------DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDK 174 (298)
Q Consensus 103 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 174 (298)
.....++.|+.+..+++.|+.||.+++..+.+...... ....-+.+.+|+..|.-+.|+.+.+.|-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 34678999999999999999999999999876543211 1223457789999999999999999999999999
Q ss_pred eEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeec
Q 037555 175 TVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFD 254 (298)
Q Consensus 175 ~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 254 (298)
.|.+|-+-.+.-...+.. ...++.|.+++|..+| ..+.....||.|.|=.+...+-- -+.
T Consensus 94 lIiVWmlykgsW~EEMiN-nRnKSvV~SmsWn~dG-----~kIcIvYeDGavIVGsvdGNRIw------------gKe-- 153 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMIN-NRNKSVVVSMSWNLDG-----TKICIVYEDGAVIVGSVDGNRIW------------GKE-- 153 (1189)
T ss_pred eEEEEeeecccHHHHHhh-CcCccEEEEEEEcCCC-----cEEEEEEccCCEEEEeeccceec------------chh--
Confidence 999999877765543322 2356789999999999 78888889998887766543210 001
Q ss_pred cCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 255 PFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 255 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
++ ......+.|++|. ..++.+-.+|.+.++|.+
T Consensus 154 -Lk--g~~l~hv~ws~D~-------~~~Lf~~ange~hlydnq 186 (1189)
T KOG2041|consen 154 -LK--GQLLAHVLWSEDL-------EQALFKKANGETHLYDNQ 186 (1189)
T ss_pred -cc--hheccceeecccH-------HHHHhhhcCCcEEEeccc
Confidence 11 1233468899998 677777778888888753
No 303
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=3.9e-06 Score=72.10 Aligned_cols=164 Identities=16% Similarity=0.215 Sum_probs=115.2
Q ss_pred ceEEeccCCCceEEEEEcCC-------------CCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCC
Q 037555 48 ESHKLYGHGNELFSLCCDHQ-------------GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHD 114 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~-------------~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~ 114 (298)
....|..|.+.|.-..+.-+ |.++++|+ .||+|.|-.+.+.+...++. ...++.+++++|+
T Consensus 50 ~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS-----~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd 123 (846)
T KOG2066|consen 50 KFFALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCS-----DDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPD 123 (846)
T ss_pred ceeeeccccceEEEEecCCcccccccccccccCCceEEEec-----CCCcEEEeeccCCccceeEe-cCCcceeEEeccc
Confidence 34555667777666655444 99999994 59999999998887766665 5678999999997
Q ss_pred -----CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceee
Q 037555 115 -----DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQ 189 (298)
Q Consensus 115 -----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 189 (298)
.+.+++|+..| +.++.-+--+. +....+....++|.++.|. |+++|-++.+| |++||+...+.+..
T Consensus 124 ~~~~~sk~fv~GG~ag-lvL~er~wlgn-----k~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~ 194 (846)
T KOG2066|consen 124 FSRQQSKQFVSGGMAG-LVLSERNWLGN-----KDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTN 194 (846)
T ss_pred hhhhhhhheeecCcce-EEEehhhhhcC-----ccceeeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeec
Confidence 45899999988 77776443221 1111345567899999997 88999999888 89999998776652
Q ss_pred eeecC---CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555 190 ILALP---PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 190 ~~~~~---~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 233 (298)
+..-. ........+.|.+.. .|+.|-. .+|+|..++.
T Consensus 195 i~~p~~~~R~e~fpphl~W~~~~------~LVIGW~-d~v~i~~I~~ 234 (846)
T KOG2066|consen 195 IPPPSQSVRPELFPPHLHWQDED------RLVIGWG-DSVKICSIKK 234 (846)
T ss_pred cCCCCCCCCcccCCCceEecCCC------eEEEecC-CeEEEEEEec
Confidence 21111 011124567888765 5777654 4688888883
No 304
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=3e-06 Score=73.31 Aligned_cols=198 Identities=14% Similarity=0.179 Sum_probs=125.1
Q ss_pred EEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccccccc-EEEEEEcCCCCEEEEEeCCC-----eEEEEEeccCC
Q 037555 63 CCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLT-VTQIRFSHDDNLLLSVSRDR-----QFSVFAIQRTG 136 (298)
Q Consensus 63 ~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~ 136 (298)
+|++.+..++.| +.+|.|.+.+-. .+.+..++.+... |..+....+.++|++.+.|+ .+++|+++...
T Consensus 30 c~~s~~~~vvig-----t~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 30 CCSSSTGSVVIG-----TADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred EEcCCCceEEEe-----eccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 456778889999 458888877743 4555778877777 55554444446888877654 58999998764
Q ss_pred CCccceeee--EEeec-----cCCceEEEEEccCCCEEEEeeCCCeEEEEEcc--CCcceeeeeecCCCCCceEEEEEee
Q 037555 137 TGEIDYQLI--ARQEA-----HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVE--NKSSVKQILALPPFNSSVTALSWVG 207 (298)
Q Consensus 137 ~~~~~~~~~--~~~~~-----~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~--~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (298)
.... ..++ ..+.+ ...++.+++.+.+-..+|.|-.+|.|..+.-+ ..+..+.. .......+|+.+++..
T Consensus 104 ~n~s-P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~-~~~~~~~pITgL~~~~ 181 (933)
T KOG2114|consen 104 KNNS-PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQD-YSHRGKEPITGLALRS 181 (933)
T ss_pred CCCC-cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcccccee-eeccCCCCceeeEEec
Confidence 3221 1112 11111 35678899999999999999999999988432 11212211 2234578999999998
Q ss_pred ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC
Q 037555 208 LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA 287 (298)
Q Consensus 208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~ 287 (298)
++. ..+++++ ...|.+|.+... .+ ....+..|+..+++-.+++.. ..++.++.
T Consensus 182 d~~----s~lFv~T-t~~V~~y~l~gr-------------~p--~~~~ld~~G~~lnCss~~~~t-------~qfIca~~ 234 (933)
T KOG2114|consen 182 DGK----SVLFVAT-TEQVMLYSLSGR-------------TP--SLKVLDNNGISLNCSSFSDGT-------YQFICAGS 234 (933)
T ss_pred CCc----eeEEEEe-cceeEEEEecCC-------------Cc--ceeeeccCCccceeeecCCCC-------ccEEEecC
Confidence 873 3233333 456999998843 11 111134577788888888766 44444443
Q ss_pred CCcEEEeEe
Q 037555 288 DNTVRVFQV 296 (298)
Q Consensus 288 d~~i~iw~~ 296 (298)
..|.+|+.
T Consensus 235 -e~l~fY~s 242 (933)
T KOG2114|consen 235 -EFLYFYDS 242 (933)
T ss_pred -ceEEEEcC
Confidence 34666653
No 305
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=7e-07 Score=77.11 Aligned_cols=115 Identities=11% Similarity=0.093 Sum_probs=90.5
Q ss_pred eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCC
Q 037555 59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTG 138 (298)
Q Consensus 59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 138 (298)
-+-..|+|..+++|+++... ...|.|.||- ++|++...+. ..-.+++++|+|..-.|+.+-.-|.+.+|....
T Consensus 18 sti~SWHPsePlfAVA~fS~-er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~---- 90 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSP-ERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNT---- 90 (1416)
T ss_pred ccccccCCCCceeEEEEecC-CCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCC----
Confidence 34567999999999887643 3467888875 4576654443 334467799999988899998899999999876
Q ss_pred ccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccC
Q 037555 139 EIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVEN 183 (298)
Q Consensus 139 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 183 (298)
.+.-.....|..+|..+.|+++|+.++++..-|.|.+|....
T Consensus 91 ---~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 91 ---TETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ---ceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 334445567999999999999999999999999999998873
No 306
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.70 E-value=3.6e-06 Score=78.18 Aligned_cols=166 Identities=11% Similarity=0.127 Sum_probs=105.7
Q ss_pred eEEEEEcCC-CCEEEeEeccCCCCceEEEEEEcCCceeeeccc---------cc------cccEEEEEEcCCCC-EEEEE
Q 037555 59 LFSLCCDHQ-GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ---------SH------SLTVTQIRFSHDDN-LLLSV 121 (298)
Q Consensus 59 v~~~~~s~~-~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~---------~~------~~~v~~~~~~~~~~-~l~~~ 121 (298)
...++++|+ +.++++. ..++.|++||..++... .+. ++ -.....++++|+++ ++++-
T Consensus 685 P~gVa~dp~~g~LyVad-----~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVAD 758 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAM-----AGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIAD 758 (1057)
T ss_pred CeEEEEecCCCeEEEEE-----CCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEE
Confidence 457899995 4455554 34789999998766432 111 11 12346799999988 45555
Q ss_pred eCCCeEEEEEeccCCCCccc------eeeeEEeec--------cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcce
Q 037555 122 SRDRQFSVFAIQRTGTGEID------YQLIARQEA--------HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSV 187 (298)
Q Consensus 122 ~~dg~i~iwd~~~~~~~~~~------~~~~~~~~~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~ 187 (298)
+.++.|++||+......... ......+.. .-.....++++++++.+++-+.+++|++||..++...
T Consensus 759 s~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 759 SESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT 838 (1057)
T ss_pred CCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence 66799999998753210000 000000000 0112357899999998888888999999999876543
Q ss_pred eeeee----------cCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecc
Q 037555 188 KQILA----------LPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNR 235 (298)
Q Consensus 188 ~~~~~----------~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 235 (298)
..... ..+.-.....+++++++ .++++-+.++.|++||+.+..
T Consensus 839 tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG-----~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 839 TLAGTGKAGFKDGKALKAQLSEPAGLALGENG-----RLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred EEeccCCcCCCCCcccccccCCceEEEEeCCC-----CEEEEECCCCEEEEEECCCCc
Confidence 21100 01112356789999988 688888889999999998764
No 307
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=1e-05 Score=66.84 Aligned_cols=255 Identities=15% Similarity=0.177 Sum_probs=152.8
Q ss_pred ccceeeeecCcccccccCCCCC--ce-eeeccCCCcccccccCC-----C--CceEEecc---CCCceEEEEEcCCCCEE
Q 037555 5 TRETVERHGNDGLDTLESVPDA--VP-AVFTEPPIEDQLAWHTL-----W--PESHKLYG---HGNELFSLCCDHQGKLV 71 (298)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~~~~~~~~-----~--~~~~~~~~---h~~~v~~~~~s~~~~~l 71 (298)
.+..++..+|.....+....+. +. ...++ -+++.++.... + +...-+.+ .-..|....|+|.+.+|
T Consensus 283 ~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS-~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~ll 361 (698)
T KOG2314|consen 283 QLIIWDIATGLLKRSFPVIKSPYLKWPIFRWS-HDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLL 361 (698)
T ss_pred eEEEEEccccchhcceeccCCCccccceEEec-cCCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceE
Confidence 3556777888887777764332 22 22222 33333333321 1 11111111 23568889999999999
Q ss_pred EeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe----------CCCeEEEEEeccCCCCccc
Q 037555 72 ASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS----------RDRQFSVFAIQRTGTGEID 141 (298)
Q Consensus 72 ~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~ 141 (298)
|.-..+....-..+.+..+.+++.+++...|.-.=..+-|-.+|.+|+.-- .-..+-|+.++...
T Consensus 362 AYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd----- 436 (698)
T KOG2314|consen 362 AYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD----- 436 (698)
T ss_pred EEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC-----
Confidence 987654434455788888888888777665544334566777787776521 11234455555421
Q ss_pred eeeeEEeeccCCceEEEEEccCCCEEEEeeC---CCeEEEEEccC-CcceeeeeecCCCCCceEEEEEeeccccCCccEE
Q 037555 142 YQLIARQEAHKRIIWSCSWNPFGHEFATGSR---DKTVKIWAVEN-KSSVKQILALPPFNSSVTALSWVGLDRQKNHGFL 217 (298)
Q Consensus 142 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l 217 (298)
.......-...|...+|-|.|+.|++-+. ..++.+|-+++ ......+..+. ....+.+.|+|.| .++
T Consensus 437 --Ipve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG-----~fv 507 (698)
T KOG2314|consen 437 --IPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKG-----RFV 507 (698)
T ss_pred --CCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCC-----cEE
Confidence 11112234567889999999998887764 35688998873 33333222333 2557889999999 677
Q ss_pred EEee---cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCC------
Q 037555 218 AVGM---ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD------ 288 (298)
Q Consensus 218 ~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d------ 288 (298)
+.+. ..|.+.++|+..... +.+. ...| ...+.+.|.|.| ++++|++.-
T Consensus 508 vva~l~s~~g~l~F~D~~~a~~-----------k~~~----~~eh-~~at~veWDPtG-------RYvvT~ss~wrhk~d 564 (698)
T KOG2314|consen 508 VVAALVSRRGDLEFYDTDYADL-----------KDTA----SPEH-FAATEVEWDPTG-------RYVVTSSSSWRHKVD 564 (698)
T ss_pred EEEEecccccceEEEecchhhh-----------hhcc----Cccc-cccccceECCCC-------CEEEEeeehhhhccc
Confidence 7654 468899999874211 1111 1112 345778999999 899999864
Q ss_pred CcEEEeEec
Q 037555 289 NTVRVFQVN 297 (298)
Q Consensus 289 ~~i~iw~~~ 297 (298)
.--+||+++
T Consensus 565 ~GYri~tfq 573 (698)
T KOG2314|consen 565 NGYRIFTFQ 573 (698)
T ss_pred cceEEEEee
Confidence 334566553
No 308
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.69 E-value=4e-06 Score=75.21 Aligned_cols=207 Identities=15% Similarity=0.167 Sum_probs=129.4
Q ss_pred CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEecc
Q 037555 55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQR 134 (298)
Q Consensus 55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 134 (298)
..+.|.++.|..++..++.+ .+.|.|.+-|.++..... ...-...|.+++|+||+..++..+..+++.+.+-.-
T Consensus 67 gd~~i~s~~fl~d~~~i~v~-----~~~G~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f 140 (1265)
T KOG1920|consen 67 GDDEIVSVQFLADTNSICVI-----TALGDIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMTKDF 140 (1265)
T ss_pred CCcceEEEEEecccceEEEE-----ecCCcEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccc
Confidence 34689999999988877777 458889888887654322 223456899999999999999999888887765421
Q ss_pred CC----CC--------c-c---ceeeeEEeec---------------------cCCceEEEEEccCCCEEEEee-----C
Q 037555 135 TG----TG--------E-I---DYQLIARQEA---------------------HKRIIWSCSWNPFGHEFATGS-----R 172 (298)
Q Consensus 135 ~~----~~--------~-~---~~~~~~~~~~---------------------~~~~v~~~~~~~~~~~l~~~~-----~ 172 (298)
.. .. . . -++....+.+ ..+.=+.+.|--||.++++.. .
T Consensus 141 ~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 141 EPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETG 220 (1265)
T ss_pred cchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCC
Confidence 00 00 0 0 0000001110 111224588999999998843 3
Q ss_pred CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee---cCCcEEEEEeeecccccccCCCCCCcce
Q 037555 173 DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM---ESGVIELWSISVNRTNDVSTPAPSTANI 249 (298)
Q Consensus 173 dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 249 (298)
...|++||.+ +..-. .-......-.+++|-|.| ..+++-. .|+.|.+|..+.-+..
T Consensus 221 ~RkirV~drE-g~Lns---~se~~~~l~~~LsWkPsg-----s~iA~iq~~~sd~~IvffErNGL~hg------------ 279 (1265)
T KOG1920|consen 221 TRKIRVYDRE-GALNS---TSEPVEGLQHSLSWKPSG-----SLIAAIQCKTSDSDIVFFERNGLRHG------------ 279 (1265)
T ss_pred ceeEEEeccc-chhhc---ccCcccccccceeecCCC-----CeEeeeeecCCCCcEEEEecCCcccc------------
Confidence 3789999987 32211 111223344689999988 6777643 3567888875533211
Q ss_pred eeeeccCCcccceEEEEEeecCCCCCCCcceEEEe---eeCCCcEEEeEe
Q 037555 250 IIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLAS---CGADNTVRVFQV 296 (298)
Q Consensus 250 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s---~~~d~~i~iw~~ 296 (298)
...+. +......|..++|+.++ ..|+. +.....|++|-+
T Consensus 280 ~f~l~-~p~de~~ve~L~Wns~s-------diLAv~~~~~e~~~v~lwt~ 321 (1265)
T KOG1920|consen 280 EFVLP-FPLDEKEVEELAWNSNS-------DILAVVTSNLENSLVQLWTT 321 (1265)
T ss_pred ccccC-CcccccchheeeecCCC-------CceeeeecccccceEEEEEe
Confidence 01111 22233449999999998 78887 555566999964
No 309
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.67 E-value=7.9e-07 Score=73.89 Aligned_cols=113 Identities=11% Similarity=0.258 Sum_probs=81.3
Q ss_pred ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEE
Q 037555 150 AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELW 229 (298)
Q Consensus 150 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vw 229 (298)
+....|.+++++|+...|+.|+.||.|.+||...+.... ....-.++.++|+|++ .++++|+..|.+.+|
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~-----~ka~~~P~~iaWHp~g-----ai~~V~s~qGelQ~F 326 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL-----AKAEFIPTLIAWHPDG-----AIFVVGSEQGELQCF 326 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeee-----eeecccceEEEEcCCC-----cEEEEEcCCceEEEE
Confidence 567889999999999999999999999999987654332 1234557899999999 799999999999999
Q ss_pred EeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555 230 SISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE 272 (298)
Q Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 272 (298)
|+--...................+..+-.+...+..+.|.+..
T Consensus 327 D~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~ 369 (545)
T PF11768_consen 327 DMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAP 369 (545)
T ss_pred EeecCccceeeccccCCCccEEeeehhccCcchhheeEeccCC
Confidence 9975532222111111113333444444567778889998543
No 310
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.67 E-value=1.4e-05 Score=65.35 Aligned_cols=230 Identities=18% Similarity=0.207 Sum_probs=141.1
Q ss_pred CceeeeccCCCccccccc----------CCCCceEEeccCCCceEEEEEcCCCCEEEeEeccCC----------CCceEE
Q 037555 26 AVPAVFTEPPIEDQLAWH----------TLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQS----------TAAAEI 85 (298)
Q Consensus 26 ~v~~~~~~~~~~~~~~~~----------~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~----------~~d~~i 85 (298)
++..+.++ |.+..++.. ..|..+..+. ...|.-+.|+|.+++|.+-+...- ..+..+
T Consensus 34 p~~~~~~S-P~G~~l~~~~~~~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~ 110 (561)
T COG5354 34 PVAYVSES-PLGTYLFSEHAAGVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNV 110 (561)
T ss_pred chhheeec-CcchheehhhccceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCccccCce
Confidence 44555555 555555444 2233333332 345899999999999998765321 223469
Q ss_pred EEEEcCCceeeecccccccc--EE-EEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc
Q 037555 86 WLWEVGSWKAMGRLQSHSLT--VT-QIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP 162 (298)
Q Consensus 86 ~vw~~~~~~~~~~~~~~~~~--v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 162 (298)
.+||..++..+..+..-..+ .. -+.|+-+.++.+=. ....++|+++ +..-. ..+...++ ...|....|+|
T Consensus 111 ~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~---~~p~~~lr--~~gi~dFsisP 183 (561)
T COG5354 111 FVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIE---EHPFKNLR--PVGILDFSISP 183 (561)
T ss_pred eEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccc---cCchhhcc--ccceeeEEecC
Confidence 99999999999888765554 44 67888888766544 3457889987 32211 11122222 35678888998
Q ss_pred CC--CEEEE-----eeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee-----------cCC
Q 037555 163 FG--HEFAT-----GSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM-----------ESG 224 (298)
Q Consensus 163 ~~--~~l~~-----~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~-----------~dg 224 (298)
.+ ..|+. ...++.+++|.+.....+... ++ .+..-..+.|.+.+ .+|+.-. .+.
T Consensus 184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk-~l--fk~~~~qLkW~~~g-----~~ll~l~~t~~ksnKsyfges 255 (561)
T COG5354 184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTK-NL--FKVSGVQLKWQVLG-----KYLLVLVMTHTKSNKSYFGES 255 (561)
T ss_pred CCCCceEEEEccccCCCCcEEEEEEccCCCeeeee-ee--EeecccEEEEecCC-----ceEEEEEEEeeecccceeccc
Confidence 64 33443 345788999999866655432 22 22333568888877 4544321 134
Q ss_pred cEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEee--eCCCcEEEeEec
Q 037555 225 VIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASC--GADNTVRVFQVN 297 (298)
Q Consensus 225 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~--~~d~~i~iw~~~ 297 (298)
.++|++++... +.. .....++|.+.+|.|.+ ..++++ -.+-.+.++|++
T Consensus 256 nLyl~~~~e~~-------------i~V----~~~~~~pVhdf~W~p~S-------~~F~vi~g~~pa~~s~~~lr 306 (561)
T COG5354 256 NLYLLRITERS-------------IPV----EKDLKDPVHDFTWEPLS-------SRFAVISGYMPASVSVFDLR 306 (561)
T ss_pred eEEEEeecccc-------------cce----eccccccceeeeecccC-------CceeEEecccccceeecccc
Confidence 57777776321 111 11357899999999998 454444 467777777764
No 311
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.66 E-value=3.1e-06 Score=70.44 Aligned_cols=111 Identities=14% Similarity=0.189 Sum_probs=78.2
Q ss_pred EEEEEcc-CCCEEEEe----eCCCe----EEEEEccCCccee-eeeecCCCCCceEEEEEeeccccCCccEEEEeecCCc
Q 037555 156 WSCSWNP-FGHEFATG----SRDKT----VKIWAVENKSSVK-QILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGV 225 (298)
Q Consensus 156 ~~~~~~~-~~~~l~~~----~~dg~----i~~wd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~ 225 (298)
.++.|+- +.+.+.+. +.+|. -.+|++...+... .+..+ ..++.+.+.+++|+. ..++.|+.||.
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E-----~kLvlGC~DgS 282 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSI-PLPSQVICCARSPSE-----DKLVLGCEDGS 282 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEE-ecCCcceEEecCccc-----ceEEEEecCCe
Confidence 5566775 34455443 23443 3456665443322 22233 477889999999998 79999999999
Q ss_pred EEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 226 IELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 226 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
|.+||...+. ..+ ....-.++.++|+|++ .++++|+..|.+.+||+.
T Consensus 283 iiLyD~~~~~---------------t~~---~ka~~~P~~iaWHp~g-------ai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 283 IILYDTTRGV---------------TLL---AKAEFIPTLIAWHPDG-------AIFVVGSEQGELQCFDMA 329 (545)
T ss_pred EEEEEcCCCe---------------eee---eeecccceEEEEcCCC-------cEEEEEcCCceEEEEEee
Confidence 9999987541 111 1234567889999999 899999999999999985
No 312
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.64 E-value=1.4e-05 Score=66.95 Aligned_cols=160 Identities=11% Similarity=0.100 Sum_probs=94.6
Q ss_pred EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe-CCC--e
Q 037555 50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS-RDR--Q 126 (298)
Q Consensus 50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg--~ 126 (298)
..+....+......|+|||+.|+..... ..+..|.++++.+++. ..+..+........|+|||+.|+-.+ ..+ .
T Consensus 226 ~~lt~~~g~~~~~~~SPDG~~la~~~~~--~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~ 302 (419)
T PRK04043 226 EKIASSQGMLVVSDVSKDGSKLLLTMAP--KGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPN 302 (419)
T ss_pred EEEecCCCcEEeeEECCCCCEEEEEEcc--CCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCce
Confidence 3444455556778899999877765432 2367899999887764 33443443344568999998766655 344 4
Q ss_pred EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC---------CeEEEEEccCCcceeeeeecCCCC
Q 037555 127 FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD---------KTVKIWAVENKSSVKQILALPPFN 197 (298)
Q Consensus 127 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~~wd~~~~~~~~~~~~~~~~~ 197 (298)
|.+.|+..+. . ..+..... ....|+|+|+.|+..... ..|.+.|+.++.. . .+...
T Consensus 303 Iy~~dl~~g~-------~-~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~---~LT~~- 367 (419)
T PRK04043 303 IFMKKLNSGS-------V-EQVVFHGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-R---RLTAN- 367 (419)
T ss_pred EEEEECCCCC-------e-EeCccCCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-E---ECCCC-
Confidence 5555665422 1 11111111 124899999988877653 3688888877654 3 23222
Q ss_pred CceEEEEEeeccccCCccEEEEee-cCCc--EEEEEee
Q 037555 198 SSVTALSWVGLDRQKNHGFLAVGM-ESGV--IELWSIS 232 (298)
Q Consensus 198 ~~v~~~~~~~~~~~~~~~~l~~g~-~dg~--i~vwd~~ 232 (298)
.......|+|++ ..|+... ..+. |.+.++.
T Consensus 368 ~~~~~p~~SPDG-----~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 368 GVNQFPRFSSDG-----GSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred CCcCCeEECCCC-----CEEEEEEccCCcEEEEEEecC
Confidence 233468899998 4554444 3333 4455554
No 313
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=5.2e-07 Score=72.31 Aligned_cols=176 Identities=11% Similarity=0.070 Sum_probs=123.6
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc--ccccEEEEEEcCC-C--CEEEEEeC
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS--HSLTVTQIRFSHD-D--NLLLSVSR 123 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~--~~~~v~~~~~~~~-~--~~l~~~~~ 123 (298)
+..+..|-..|.+++.+.++.++++.+ ..|..++++|+++-..+..++. ..+.+. +..++. . .+.++.-.
T Consensus 46 VKhFraHL~~I~sl~~S~dg~L~~Sv~----d~Dhs~KvfDvEn~DminmiKL~~lPg~a~-wv~skGd~~s~IAVs~~~ 120 (558)
T KOG0882|consen 46 VKHFRAHLGVILSLAVSYDGWLFRSVE----DPDHSVKVFDVENFDMINMIKLVDLPGFAE-WVTSKGDKISLIAVSLFK 120 (558)
T ss_pred hhhhHHHHHHHHhhhccccceeEeecc----CcccceeEEEeeccchhhhcccccCCCceE-EecCCCCeeeeEEeeccc
Confidence 455677889999999999999999974 3489999999987665543331 222221 112221 1 23333456
Q ss_pred CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccC-Cccee-----------eee
Q 037555 124 DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVEN-KSSVK-----------QIL 191 (298)
Q Consensus 124 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~-----------~~~ 191 (298)
++.+.++|-.... .+....-.-|..+|..+.++|.+..+++....|.|.-|.... .+.+. .+.
T Consensus 121 sg~i~VvD~~~d~-----~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy 195 (558)
T KOG0882|consen 121 SGKIFVVDGFGDF-----CQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLY 195 (558)
T ss_pred CCCcEEECCcCCc-----CccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhh
Confidence 8899999976543 233344456899999999999999999999999999998873 11110 111
Q ss_pred ecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccc
Q 037555 192 ALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDV 239 (298)
Q Consensus 192 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~ 239 (298)
.+........++.|+|++ ..+.+-+.|..|+++++++++..+.
T Consensus 196 ~f~K~Kt~pts~Efsp~g-----~qistl~~DrkVR~F~~KtGklvqe 238 (558)
T KOG0882|consen 196 GFPKAKTEPTSFEFSPDG-----AQISTLNPDRKVRGFVFKTGKLVQE 238 (558)
T ss_pred cccccccCccceEEcccc-----CcccccCcccEEEEEEeccchhhhh
Confidence 233345678899999999 7888888999999999999865543
No 314
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.62 E-value=1.5e-06 Score=73.54 Aligned_cols=145 Identities=12% Similarity=0.206 Sum_probs=100.2
Q ss_pred CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeec-cccccccEEEEEEcCCCCEEEEEeCCCeEEEEEecc
Q 037555 56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR-LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQR 134 (298)
Q Consensus 56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 134 (298)
...|.=-+++..+++++.|+ .-|.+++|+-..++.... ..+..+.+..+..+++..++|.|+..|.|.++.++.
T Consensus 33 ~~~v~lTc~dst~~~l~~Gs-----S~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGS-----SAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNK 107 (726)
T ss_pred cceEEEEEeecCCceEEEec-----ccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhc
Confidence 34444445566788999995 489999999876655432 223455566777888888999999999999999887
Q ss_pred CCCCccceeeeEEe-eccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCC-cceeeeeecCCCCCceEEEEEee
Q 037555 135 TGTGEIDYQLIARQ-EAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENK-SSVKQILALPPFNSSVTALSWVG 207 (298)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~~~ 207 (298)
..... ...+... +.|...|++++|++++..+++|...|+|..-.+... ........+-...+.|..+....
T Consensus 108 ~~p~~--~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q 180 (726)
T KOG3621|consen 108 ELPRD--LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ 180 (726)
T ss_pred cCCCc--ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc
Confidence 43322 1222222 237889999999999999999999999988877762 11111112223456777776665
No 315
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.62 E-value=0.00011 Score=56.56 Aligned_cols=213 Identities=14% Similarity=0.132 Sum_probs=114.7
Q ss_pred EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccc-cccEEEEEEcCCCCEEEEEeCCCeEE
Q 037555 50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSH-SLTVTQIRFSHDDNLLLSVSRDRQFS 128 (298)
Q Consensus 50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~ 128 (298)
+.+.+-...+..++|+|+...|++.. .+.+.|..++.+ |+.++.+.-. -+....+++..++.++++.-.++.+.
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~----d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~ 89 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQ----DEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLY 89 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEE----TTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEE----CCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEE
Confidence 45666677899999999866555554 568889888875 7777765422 34578899988887777766799999
Q ss_pred EEEeccCCCCccceeeeEEe-----eccCCceEEEEEccCCCEEEEeeCCCeEEEEEccC---Ccceeeee-----ecCC
Q 037555 129 VFAIQRTGTGEIDYQLIARQ-----EAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVEN---KSSVKQIL-----ALPP 195 (298)
Q Consensus 129 iwd~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~---~~~~~~~~-----~~~~ 195 (298)
++++........ ......+ ..++..+-.++|+|.++.|+++-...-..+|.++. ........ ....
T Consensus 90 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (248)
T PF06977_consen 90 IFTIDDDTTSLD-RADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL 168 (248)
T ss_dssp EEEE----TT---EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred EEEEeccccccc-hhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccc
Confidence 999854332111 1111111 13456789999999888887777666666776654 11111000 0112
Q ss_pred CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCc-c-----cceEEEEEee
Q 037555 196 FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFAC-H-----VAAVNRMAWK 269 (298)
Q Consensus 196 ~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~v~~~~~~ 269 (298)
....+.+++++|... .+++....+..|..+|.. + +....+.-..+ | -...-.|+|.
T Consensus 169 ~~~d~S~l~~~p~t~----~lliLS~es~~l~~~d~~-G-------------~~~~~~~L~~g~~gl~~~~~QpEGIa~d 230 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTG----HLLILSDESRLLLELDRQ-G-------------RVVSSLSLDRGFHGLSKDIPQPEGIAFD 230 (248)
T ss_dssp -SS---EEEEETTTT----EEEEEETTTTEEEEE-TT----------------EEEEEE-STTGGG-SS---SEEEEEE-
T ss_pred eeccccceEEcCCCC----eEEEEECCCCeEEEECCC-C-------------CEEEEEEeCCcccCcccccCCccEEEEC
Confidence 334578899999763 677777788889888843 3 22222221111 1 1346789999
Q ss_pred cCCCCCCCcceEEEeeeCCCcEEEe
Q 037555 270 THEKPKNSRTMQLASCGADNTVRVF 294 (298)
Q Consensus 270 ~~~~~~~~~~~~l~s~~~d~~i~iw 294 (298)
++| ++.++ ++-+..++|
T Consensus 231 ~~G-------~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 231 PDG-------NLYIV-SEPNLFYRF 247 (248)
T ss_dssp TT---------EEEE-ETTTEEEEE
T ss_pred CCC-------CEEEE-cCCceEEEe
Confidence 998 44444 455544443
No 316
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1e-06 Score=69.60 Aligned_cols=139 Identities=17% Similarity=0.260 Sum_probs=93.5
Q ss_pred EEEEEcCCceeeeccccccccEEEEEEcCCCC-EEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC
Q 037555 85 IWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDN-LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF 163 (298)
Q Consensus 85 i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 163 (298)
+++.+..+.+....+..+...|.+++|+|..+ ++..++.+..|+|.|+++ ...+..+..+ ..+++++|.-+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet-------~~~vssy~a~-~~~wSC~wDld 246 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLET-------SCVVSSYIAY-NQIWSCCWDLD 246 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccc-------ceeeeheecc-CCceeeeeccC
Confidence 66666666666666677889999999999776 788999999999999997 5556666666 88999999975
Q ss_pred C-CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc-cCCccEEEEeecCCcEEEEEeee
Q 037555 164 G-HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR-QKNHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 164 ~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~l~~g~~dg~i~vwd~~~ 233 (298)
. ++++.|-..|.|.+||++..+.......-.....+|..++.-+-.. .+.+.+++....+ +..|++..
T Consensus 247 e~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~ 316 (463)
T KOG1645|consen 247 ERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVF 316 (463)
T ss_pred CcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhc
Confidence 4 6788888999999999997654331111111234454444333221 1112445444432 55666643
No 317
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=8.5e-06 Score=70.75 Aligned_cols=71 Identities=13% Similarity=0.220 Sum_probs=62.4
Q ss_pred eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEecc
Q 037555 59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQR 134 (298)
Q Consensus 59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 134 (298)
+++++|+|..-.|+.| -+-|.+.+|...+.+.-.....|+.+|..+.|+++|..++++..-|.+.+|....
T Consensus 62 atSLCWHpe~~vLa~g-----we~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQG-----WEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred hhhhccChHHHHHhhc-----cccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 5679999998888888 5689999999987766666667999999999999999999999999999998874
No 318
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.52 E-value=4.2e-08 Score=81.78 Aligned_cols=207 Identities=14% Similarity=0.117 Sum_probs=131.4
Q ss_pred CceEEEEEcCCC--CEEEeEeccCCCCceEEEEEEcCCcee--eeccccccccEEEEEEcC-CCCEEEEEe----CCCeE
Q 037555 57 NELFSLCCDHQG--KLVASSCKAQSTAAAEIWLWEVGSWKA--MGRLQSHSLTVTQIRFSH-DDNLLLSVS----RDRQF 127 (298)
Q Consensus 57 ~~v~~~~~s~~~--~~l~~~~~~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~----~dg~i 127 (298)
..+.|++++.+. ..+++| ..+|.|-+-.++...- .....++..++++++|++ |.+.||+|- .|..+
T Consensus 57 qy~kcva~~y~~d~cIlavG-----~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~ 131 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVG-----SATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSL 131 (783)
T ss_pred CCceeehhhcCCchhhhhhc-----cccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCc
Confidence 456777776543 456666 3478898887754322 233556888999999998 556777763 35679
Q ss_pred EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555 128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG 207 (298)
Q Consensus 128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (298)
.|||+.+.-..+........ .......+++|..+.+++.+|.....++++|++...... .. -....+..+...|
T Consensus 132 ~Iwdi~s~ltvPke~~~fs~--~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~---~s-vnTk~vqG~tVdp 205 (783)
T KOG1008|consen 132 KIWDINSLLTVPKESPLFSS--STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSV---SS-VNTKYVQGITVDP 205 (783)
T ss_pred cceecccccCCCcccccccc--ccccCccccccccCcchhhcccccchhhhhhhhhhhhhh---hh-hhhhhcccceecC
Confidence 99999875332211111111 123345588888888899999999999999999543322 11 1233566788888
Q ss_pred ccccCCccEEEEeecCCcEEEEE-eeecccccccCCCCCCcceeeeec-cCCcccceEEEEEeecCCCCCCCcceEEEee
Q 037555 208 LDRQKNHGFLAVGMESGVIELWS-ISVNRTNDVSTPAPSTANIIIRFD-PFACHVAAVNRMAWKTHEKPKNSRTMQLASC 285 (298)
Q Consensus 208 ~~~~~~~~~l~~g~~dg~i~vwd-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~ 285 (298)
... +++++-. ||.|.+|| .++-+ .++..+. .-......+..++|.|..+ .+++++
T Consensus 206 ~~~----nY~cs~~-dg~iAiwD~~rnie------------npl~~i~~~~N~~~~~l~~~aycPtrt------glla~l 262 (783)
T KOG1008|consen 206 FSP----NYFCSNS-DGDIAIWDTYRNIE------------NPLQIILRNENKKPKQLFALAYCPTRT------GLLAVL 262 (783)
T ss_pred CCC----Cceeccc-cCceeeccchhhhc------------cHHHHHhhCCCCcccceeeEEeccCCc------chhhhh
Confidence 543 6776655 99999999 44332 1111111 0011123588999999874 577777
Q ss_pred eCC-CcEEEeEec
Q 037555 286 GAD-NTVRVFQVN 297 (298)
Q Consensus 286 ~~d-~~i~iw~~~ 297 (298)
..| ++|+++++.
T Consensus 263 ~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 263 SRDSITIRLYDIC 275 (783)
T ss_pred ccCcceEEEeccc
Confidence 765 688888875
No 319
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.50 E-value=6.4e-05 Score=67.84 Aligned_cols=162 Identities=17% Similarity=0.276 Sum_probs=99.4
Q ss_pred CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcC----C-------------------ceeeecccccc--------
Q 037555 55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVG----S-------------------WKAMGRLQSHS-------- 103 (298)
Q Consensus 55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~----~-------------------~~~~~~~~~~~-------- 103 (298)
-.+.|.+++||||+..++... ...++.+-.-. . |+....|.+..
T Consensus 108 vd~GI~aaswS~Dee~l~liT-----~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~ 182 (1265)
T KOG1920|consen 108 VDNGISAASWSPDEELLALIT-----GRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQK 182 (1265)
T ss_pred ccCceEEEeecCCCcEEEEEe-----CCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccc
Confidence 457899999999999988884 35566554321 0 11111122111
Q ss_pred -------------ccEEEEEEcCCCCEEEEE-----eCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCC
Q 037555 104 -------------LTVTQIRFSHDDNLLLSV-----SRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGH 165 (298)
Q Consensus 104 -------------~~v~~~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 165 (298)
+.=+.+.|--||.++++. ..-+.|++||-+. . +-..-....+.-.+++|-|.|.
T Consensus 183 ~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg-~-------Lns~se~~~~l~~~LsWkPsgs 254 (1265)
T KOG1920|consen 183 IEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREG-A-------LNSTSEPVEGLQHSLSWKPSGS 254 (1265)
T ss_pred ccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEecccc-h-------hhcccCcccccccceeecCCCC
Confidence 111358899999999884 2237999999762 1 1111122233446799999999
Q ss_pred EEEEee---CCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEE---eecCCcEEEEEeeec
Q 037555 166 EFATGS---RDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAV---GMESGVIELWSISVN 234 (298)
Q Consensus 166 ~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~---g~~dg~i~vwd~~~~ 234 (298)
.+++-. .|+.|.++.-...+.-.....++.....+..++|+.++ ..|++ ......|++|-+.+.
T Consensus 255 ~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~s-----diLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 255 LIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNS-----DILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCC-----CceeeeecccccceEEEEEecCe
Confidence 988864 45678888654332221111233333448999999988 67777 444455999988764
No 320
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.48 E-value=1.7e-06 Score=66.30 Aligned_cols=172 Identities=14% Similarity=0.254 Sum_probs=112.9
Q ss_pred ccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccC------------CceEEEEEccCC--CEE
Q 037555 102 HSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHK------------RIIWSCSWNPFG--HEF 167 (298)
Q Consensus 102 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~~~~--~~l 167 (298)
....|+++.|...|.++++|...|.|.+|.-....... .+....++.|. ..|..+.|..++ +.+
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ce--ykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hF 102 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCE--YKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHF 102 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccc--hhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceE
Confidence 34578999999999999999999999999866533111 22333344442 357788887644 567
Q ss_pred EEeeCCCeEEEEEccCCcce----------------------e-----------------eee-ecCCCCCceEEEEEee
Q 037555 168 ATGSRDKTVKIWAVENKSSV----------------------K-----------------QIL-ALPPFNSSVTALSWVG 207 (298)
Q Consensus 168 ~~~~~dg~i~~wd~~~~~~~----------------------~-----------------~~~-~~~~~~~~v~~~~~~~ 207 (298)
+..+.|.+|++|.+...... . +.+ ....|...+.++.|..
T Consensus 103 LlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns 182 (460)
T COG5170 103 LLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS 182 (460)
T ss_pred EEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence 77888999999988653100 0 000 0124556678888888
Q ss_pred ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeecc--CCcccceEEEEEeecCCCCCCCcceEEEee
Q 037555 208 LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDP--FACHVAAVNRMAWKTHEKPKNSRTMQLASC 285 (298)
Q Consensus 208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~ 285 (298)
+. +.++++ +|=.|.+|++.-.... -.+..+.+ +..-...|++..|+|... +.+.-.
T Consensus 183 D~-----et~lSa-DdLrINLWnl~i~D~s----------FnIVDiKP~nmeeLteVItSaeFhp~~c------n~fmYS 240 (460)
T COG5170 183 DK-----ETLLSA-DDLRINLWNLEIIDGS----------FNIVDIKPHNMEELTEVITSAEFHPEMC------NVFMYS 240 (460)
T ss_pred ch-----heeeec-cceeeeeccccccCCc----------eEEEeccCccHHHHHHHHhhcccCHhHc------ceEEEe
Confidence 76 566665 5778999998754211 11112111 111245689999999763 677888
Q ss_pred eCCCcEEEeEec
Q 037555 286 GADNTVRVFQVN 297 (298)
Q Consensus 286 ~~d~~i~iw~~~ 297 (298)
+..|.|++-|++
T Consensus 241 sSkG~Ikl~DlR 252 (460)
T COG5170 241 SSKGEIKLNDLR 252 (460)
T ss_pred cCCCcEEehhhh
Confidence 889999998886
No 321
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.48 E-value=8e-08 Score=80.15 Aligned_cols=169 Identities=18% Similarity=0.237 Sum_probs=113.9
Q ss_pred EEeccCCCceEEEEEcCC-CCEEEeEeccCCCCceEEEEEEcCCc--eeeec--ccc-ccccEEEEEEcCCCCEEEEEeC
Q 037555 50 HKLYGHGNELFSLCCDHQ-GKLVASSCKAQSTAAAEIWLWEVGSW--KAMGR--LQS-HSLTVTQIRFSHDDNLLLSVSR 123 (298)
Q Consensus 50 ~~~~~h~~~v~~~~~s~~-~~~l~~~~~~~~~~d~~i~vw~~~~~--~~~~~--~~~-~~~~v~~~~~~~~~~~l~~~~~ 123 (298)
....+|....++++|++- ...||+| .+....|..+.|||+.++ .+... |.+ ......+++|..+.+++++|..
T Consensus 96 E~tp~~ar~Ct~lAwneLDtn~LAag-ldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~ 174 (783)
T KOG1008|consen 96 EVTPGYARPCTSLAWNELDTNHLAAG-LDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMT 174 (783)
T ss_pred eecccccccccccccccccHHHHHhh-hhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccc
Confidence 344567889999999984 4556655 555456788999999876 33222 222 3445668899988889999999
Q ss_pred CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCCCeEEEEE-ccCCcceeeeeecCC----CC
Q 037555 124 DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWA-VENKSSVKQILALPP----FN 197 (298)
Q Consensus 124 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd-~~~~~~~~~~~~~~~----~~ 197 (298)
...+.++|++... .....-....+..+.+.| .++++++-. ||.|.+|| .+.-+... ..+.. ..
T Consensus 175 sr~~~ifdlRqs~--------~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl--~~i~~~~N~~~ 243 (783)
T KOG1008|consen 175 SRSVHIFDLRQSL--------DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPL--QIILRNENKKP 243 (783)
T ss_pred cchhhhhhhhhhh--------hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHH--HHHhhCCCCcc
Confidence 9999999998421 221122234566778888 777877766 89999999 44332211 12221 12
Q ss_pred CceEEEEEeeccccCCccEEEEeec-CCcEEEEEeeec
Q 037555 198 SSVTALSWVGLDRQKNHGFLAVGME-SGVIELWSISVN 234 (298)
Q Consensus 198 ~~v~~~~~~~~~~~~~~~~l~~g~~-dg~i~vwd~~~~ 234 (298)
..+..++|+|... ..+++... .+.|++|++...
T Consensus 244 ~~l~~~aycPtrt----glla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 244 KQLFALAYCPTRT----GLLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred cceeeEEeccCCc----chhhhhccCcceEEEeccccc
Confidence 3489999999864 56666664 578999998754
No 322
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.45 E-value=0.00023 Score=57.63 Aligned_cols=99 Identities=16% Similarity=0.186 Sum_probs=75.2
Q ss_pred eEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC----------CCeEEEEEeccCCCCccceeeeEEeeccC
Q 037555 83 AEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR----------DRQFSVFAIQRTGTGEIDYQLIARQEAHK 152 (298)
Q Consensus 83 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 152 (298)
++|.+.|..+++.+.++.....+- .+ ++||++.|+++.. +..|.+||..+ .+.+..+.-..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t-------~~~~~~i~~p~ 97 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT-------HLPIADIELPE 97 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECcc-------CcEEeEEccCC
Confidence 789999999999988877433333 34 9999998777654 78999999998 45555554321
Q ss_pred -------CceEEEEEccCCCEEEEee-C-CCeEEEEEccCCcceeee
Q 037555 153 -------RIIWSCSWNPFGHEFATGS-R-DKTVKIWAVENKSSVKQI 190 (298)
Q Consensus 153 -------~~v~~~~~~~~~~~l~~~~-~-dg~i~~wd~~~~~~~~~~ 190 (298)
.....++++|+|++|++.. . +..|.+.|+.+++.+..+
T Consensus 98 ~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei 144 (352)
T TIGR02658 98 GPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMM 144 (352)
T ss_pred CchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEE
Confidence 1234788999999998766 3 789999999999888744
No 323
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.32 E-value=0.00016 Score=60.27 Aligned_cols=170 Identities=12% Similarity=0.113 Sum_probs=97.8
Q ss_pred CceEEEEEEcCCceeeeccccc-c------ccEEEEEEcC--CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc
Q 037555 81 AAAEIWLWEVGSWKAMGRLQSH-S------LTVTQIRFSH--DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH 151 (298)
Q Consensus 81 ~d~~i~vw~~~~~~~~~~~~~~-~------~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 151 (298)
.++.+..+|..+++.+...... . ..+..+.-+| .+..++.++.+|.+..+|..++. .+-... .
T Consensus 198 ~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~-------~~W~~~-~ 269 (377)
T TIGR03300 198 AGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGR-------VLWKRD-A 269 (377)
T ss_pred CCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCc-------EEEeec-c
Confidence 4788999999888765432210 0 0000111111 34578888889999999987632 222211 1
Q ss_pred CCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEe
Q 037555 152 KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSI 231 (298)
Q Consensus 152 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~ 231 (298)
.. ..... ..+..+++++.+|.|..+|..+++.+.....+. .....+... .+ ..+++++.+|.|+++|.
T Consensus 270 ~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~--~~~~ssp~i--~g-----~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 270 SS-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELK--YRQLTAPAV--VG-----GYLVVGDFEGYLHWLSR 337 (377)
T ss_pred CC-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEcccccc--CCccccCEE--EC-----CEEEEEeCCCEEEEEEC
Confidence 11 11122 246788888899999999999887665221111 111122222 23 57888999999999998
Q ss_pred eecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEe
Q 037555 232 SVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVF 294 (298)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 294 (298)
.++ +.+..+. .+...+..--...++ .|+.++.||.|..|
T Consensus 338 ~tG-------------~~~~~~~---~~~~~~~~sp~~~~~--------~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 338 EDG-------------SFVARLK---TDGSGIASPPVVVGD--------GLLVQTRDGDLYAF 376 (377)
T ss_pred CCC-------------CEEEEEE---cCCCccccCCEEECC--------EEEEEeCCceEEEe
Confidence 877 4444433 122222221122233 57788889998875
No 324
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.32 E-value=8.4e-05 Score=65.94 Aligned_cols=140 Identities=11% Similarity=0.093 Sum_probs=93.8
Q ss_pred CceEEEEEEcCCceeeecccccccc-EEEEEEcC-----CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCc
Q 037555 81 AAAEIWLWEVGSWKAMGRLQSHSLT-VTQIRFSH-----DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRI 154 (298)
Q Consensus 81 ~d~~i~vw~~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 154 (298)
....|+-.|++.|+.+..+..+... |..++=.. +....+.|-.+..+..||.+..+.... ....+.+ .....
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v-~~~~k~Y-~~~~~ 579 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV-DSQSKQY-SSKNN 579 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCcee-ecccccc-ccCCC
Confidence 3578999999999999998876644 54443221 123456677788899999987542110 0011111 23345
Q ss_pred eEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEee
Q 037555 155 IWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSIS 232 (298)
Q Consensus 155 v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~ 232 (298)
..|++-..+| +||+|+.+|.||+||--. .. ....+++...+|..|..+.+| .+|++.+ +..|.+++..
T Consensus 580 Fs~~aTt~~G-~iavgs~~G~IRLyd~~g-~~--AKT~lp~lG~pI~~iDvt~DG-----kwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 580 FSCFATTEDG-YIAVGSNKGDIRLYDRLG-KR--AKTALPGLGDPIIGIDVTADG-----KWILATC-KTYLLLIDTL 647 (794)
T ss_pred ceEEEecCCc-eEEEEeCCCcEEeecccc-hh--hhhcCCCCCCCeeEEEecCCC-----cEEEEee-cceEEEEEEe
Confidence 6677666554 799999999999999433 22 223567788999999999999 5666655 4568888764
No 325
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.25 E-value=1.7e-06 Score=75.28 Aligned_cols=125 Identities=15% Similarity=0.189 Sum_probs=94.2
Q ss_pred eeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC
Q 037555 94 KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD 173 (298)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 173 (298)
+..++|..|....+|++|+-+.++|+.|+..|.|++|++.+ +.......+|..+|+.+.-+.+|..+++.+.-
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~s-------G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~ 1164 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS-------GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSS 1164 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccC-------ccccccccccccccccccccCCcceeeeeccc
Confidence 44566788899999999999999999999999999999998 44566678899999999999899887776543
Q ss_pred C--eEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccc
Q 037555 174 K--TVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRT 236 (298)
Q Consensus 174 g--~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~ 236 (298)
. -..+|++....... ..+. .-.++.|+... ..-+.|+......+||+.+...
T Consensus 1165 S~PlsaLW~~~s~~~~~--Hsf~----ed~~vkFsn~~-----q~r~~gt~~d~a~~YDvqT~~~ 1218 (1516)
T KOG1832|consen 1165 SSPLSALWDASSTGGPR--HSFD----EDKAVKFSNSL-----QFRALGTEADDALLYDVQTCSP 1218 (1516)
T ss_pred cCchHHHhccccccCcc--cccc----ccceeehhhhH-----HHHHhcccccceEEEecccCcH
Confidence 3 46789987532221 1222 23567787765 4556666667789999998743
No 326
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.25 E-value=6.8e-05 Score=62.64 Aligned_cols=167 Identities=18% Similarity=0.203 Sum_probs=99.9
Q ss_pred EEeccCCCceEEEEEcCCCCEEEeEeccCCCCc-eEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEE-EeCCCeE
Q 037555 50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAA-AEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLS-VSRDRQF 127 (298)
Q Consensus 50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d-~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i 127 (298)
+.+..-...+..-+|+|+++.++...... .. ..+.++++++++....+. ..+.-..-+|+|||+.++- ...||..
T Consensus 186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~--~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~ 262 (425)
T COG0823 186 QKLTDSGSLILTPAWSPDGKKLAYVSFEL--GGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSP 262 (425)
T ss_pred eEecccCcceeccccCcCCCceEEEEEec--CCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCc
Confidence 34444556788889999999887775532 12 469999999887655443 3334456789999986654 4567766
Q ss_pred EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-CCe--EEEEEccCCcceeeeeecCCCCCceEEEE
Q 037555 128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-DKT--VKIWAVENKSSVKQILALPPFNSSVTALS 204 (298)
Q Consensus 128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~--i~~wd~~~~~~~~~~~~~~~~~~~v~~~~ 204 (298)
.||-++.... ....+....+.-..-.|+|+|+.++..++ .|. |.++|.+...... .+..... -..-.
T Consensus 263 ~iy~~dl~~~------~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r--iT~~~~~--~~~p~ 332 (425)
T COG0823 263 DIYLMDLDGK------NLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR--LTFSGGG--NSNPV 332 (425)
T ss_pred cEEEEcCCCC------cceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE--eeccCCC--CcCcc
Confidence 5554443221 12223333333346789999998887764 444 6666666554422 1333222 22678
Q ss_pred EeeccccCCccEEEEeec-CCc--EEEEEeeec
Q 037555 205 WVGLDRQKNHGFLAVGME-SGV--IELWSISVN 234 (298)
Q Consensus 205 ~~~~~~~~~~~~l~~g~~-dg~--i~vwd~~~~ 234 (298)
|+|++ .+|+..+. +|. |.+.++.++
T Consensus 333 ~SpdG-----~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 333 WSPDG-----DKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred CCCCC-----CEEEEEeccCCceeeEEeccCCC
Confidence 88988 55555443 454 555555443
No 327
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.25 E-value=0.00032 Score=54.31 Aligned_cols=140 Identities=11% Similarity=-0.006 Sum_probs=85.5
Q ss_pred ceEEEEEEcCCceeeeccccc--cccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEE
Q 037555 82 AAEIWLWEVGSWKAMGRLQSH--SLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS 159 (298)
Q Consensus 82 d~~i~vw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 159 (298)
++.|..||..+++.+-....- .....+. ..+++..+++++.++.|..||..+ ++.+-.... ...+....
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~t-------G~~~W~~~~-~~~~~~~~ 72 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKT-------GKVLWRFDL-PGPISGAP 72 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTT-------SEEEEEEEC-SSCGGSGE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCC-------CCEEEEeec-ccccccee
Confidence 688999999999888766421 1112211 223566778888999999999877 344433332 22211111
Q ss_pred EccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCC-CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccc
Q 037555 160 WNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPP-FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRT 236 (298)
Q Consensus 160 ~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~ 236 (298)
...+..+++++.++.|+.+|.++++.......... .............+ ..++.+..++.|..+|.++++.
T Consensus 73 -~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 73 -VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG-----DRLYVGTSSGKLVALDPKTGKL 144 (238)
T ss_dssp -EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET-----TEEEEEETCSEEEEEETTTTEE
T ss_pred -eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEec-----CEEEEEeccCcEEEEecCCCcE
Confidence 22456777777888999999999988775312111 11112222333334 5778888789999999887754
No 328
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.24 E-value=0.00015 Score=56.18 Aligned_cols=183 Identities=9% Similarity=0.043 Sum_probs=101.6
Q ss_pred CCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeE
Q 037555 67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIA 146 (298)
Q Consensus 67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 146 (298)
++..++++. .++.|..||..+|+.+..+.. ...+.... ...+..++.++.++.+..+|..++ +.+-
T Consensus 35 ~~~~v~~~~-----~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG-------~~~W 100 (238)
T PF13360_consen 35 DGGRVYVAS-----GDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTG-------KVLW 100 (238)
T ss_dssp ETTEEEEEE-----TTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTS-------CEEE
T ss_pred eCCEEEEEc-----CCCEEEEEECCCCCEEEEeec-ccccccee-eecccccccccceeeeEecccCCc-------ceee
Confidence 445566553 389999999999988766553 11111111 224556777778889999997763 3333
Q ss_pred Ee-ecc---CCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCC--Cce-------EEEEEeeccccCC
Q 037555 147 RQ-EAH---KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFN--SSV-------TALSWVGLDRQKN 213 (298)
Q Consensus 147 ~~-~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~--~~v-------~~~~~~~~~~~~~ 213 (298)
.. ... ............+..++++..++.|..+|.++++.+..... .... ..+ ..+.+. .
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~~~~~-~----- 173 (238)
T PF13360_consen 101 SIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV-GEPRGSSPISSFSDINGSPVIS-D----- 173 (238)
T ss_dssp EEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES-STT-SS--EEEETTEEEEEECC-T-----
T ss_pred eeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec-CCCCCCcceeeecccccceEEE-C-----
Confidence 31 111 01112222333478888888899999999999988764432 2111 111 111222 1
Q ss_pred ccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEE
Q 037555 214 HGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRV 293 (298)
Q Consensus 214 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 293 (298)
..++.+..++.+.-+|+.++ +...... . ..+..+ ...++ ..|+.++.++.|..
T Consensus 174 -~~v~~~~~~g~~~~~d~~tg-------------~~~w~~~-~----~~~~~~-~~~~~-------~~l~~~~~~~~l~~ 226 (238)
T PF13360_consen 174 -GRVYVSSGDGRVVAVDLATG-------------EKLWSKP-I----SGIYSL-PSVDG-------GTLYVTSSDGRLYA 226 (238)
T ss_dssp -TEEEEECCTSSEEEEETTTT-------------EEEEEEC-S----S-ECEC-EECCC-------TEEEEEETTTEEEE
T ss_pred -CEEEEEcCCCeEEEEECCCC-------------CEEEEec-C----CCccCC-ceeeC-------CEEEEEeCCCEEEE
Confidence 25666666675333388776 3222111 1 112221 23444 56666668999999
Q ss_pred eEec
Q 037555 294 FQVN 297 (298)
Q Consensus 294 w~~~ 297 (298)
||++
T Consensus 227 ~d~~ 230 (238)
T PF13360_consen 227 LDLK 230 (238)
T ss_dssp EETT
T ss_pred EECC
Confidence 9975
No 329
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.24 E-value=0.0017 Score=52.84 Aligned_cols=183 Identities=14% Similarity=0.186 Sum_probs=110.2
Q ss_pred eEEEEEEcCCceeeecccc-ccccEEEE---EEcCC----CCEEEEEeC----------CCeEEEEEeccCCCCccceee
Q 037555 83 AEIWLWEVGSWKAMGRLQS-HSLTVTQI---RFSHD----DNLLLSVSR----------DRQFSVFAIQRTGTGEIDYQL 144 (298)
Q Consensus 83 ~~i~vw~~~~~~~~~~~~~-~~~~v~~~---~~~~~----~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~ 144 (298)
..|++.|..+.+.+..+.- ....+.++ .+..+ ..+|++|+. .|.|.++++..........+.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3588899888777665432 22334443 34332 357776653 289999999874111111333
Q ss_pred eEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCC
Q 037555 145 IARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESG 224 (298)
Q Consensus 145 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg 224 (298)
+... ...++|++++-- .+ +|+++. .+.|.+|++...+.+....... ....+.++.... ++++.|....
T Consensus 82 i~~~-~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~-~~~~i~sl~~~~-------~~I~vgD~~~ 149 (321)
T PF03178_consen 82 IHST-EVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYD-SPFYITSLSVFK-------NYILVGDAMK 149 (321)
T ss_dssp EEEE-EESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE--BSSSEEEEEEET-------TEEEEEESSS
T ss_pred EEEE-eecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheec-ceEEEEEEeccc-------cEEEEEEccc
Confidence 3333 357889988766 34 455544 4889999998877333332332 334566666553 6899999888
Q ss_pred cEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 225 VIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 225 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.+.++.++... ..+..+.. ......++++.|-+++ ..++.+..+|.+.++..+
T Consensus 150 sv~~~~~~~~~------------~~l~~va~-d~~~~~v~~~~~l~d~-------~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 150 SVSLLRYDEEN------------NKLILVAR-DYQPRWVTAAEFLVDE-------DTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SEEEEEEETTT------------E-EEEEEE-ESS-BEEEEEEEE-SS-------SEEEEEETTSEEEEEEE-
T ss_pred CEEEEEEEccC------------CEEEEEEe-cCCCccEEEEEEecCC-------cEEEEEcCCCeEEEEEEC
Confidence 89998776521 22222221 1235678999999887 689999999999998764
No 330
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.20 E-value=0.00049 Score=52.00 Aligned_cols=63 Identities=14% Similarity=0.217 Sum_probs=48.8
Q ss_pred CCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEecc
Q 037555 67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQR 134 (298)
Q Consensus 67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 134 (298)
-|.+++.|++ .|.+++.+.++|.....+..-..-=......+++.++..++.|+..+..|..+
T Consensus 62 vgdfVV~GCy-----~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 62 VGDFVVLGCY-----SGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred ECCEEEEEEc-----cCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccc
Confidence 4678999987 88999999999977776664332223345677899999999999999888876
No 331
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.17 E-value=0.00056 Score=56.98 Aligned_cols=142 Identities=11% Similarity=0.086 Sum_probs=85.6
Q ss_pred CCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEE
Q 037555 68 GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR 147 (298)
Q Consensus 68 ~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 147 (298)
+..+++++ .++.|..+|..+|+.+-.+............ ++..++.++.++.+..+|..+++ .+-.
T Consensus 65 ~~~v~v~~-----~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~-------~~W~ 130 (377)
T TIGR03300 65 GGKVYAAD-----ADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGK-------ELWR 130 (377)
T ss_pred CCEEEEEC-----CCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCc-------Eeee
Confidence 55677773 4789999999999887655432221122222 46678888899999999987632 2222
Q ss_pred eeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCce-----EEEEEeeccccCCccEEEEeec
Q 037555 148 QEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSV-----TALSWVGLDRQKNHGFLAVGME 222 (298)
Q Consensus 148 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~~~~l~~g~~ 222 (298)
... ...+.+.-.. .+..++.++.++.|..+|.++++.+... ....... .+.... + ..++.+..
T Consensus 131 ~~~-~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~---~~~~~~~~~~~~~sp~~~--~-----~~v~~~~~ 198 (377)
T TIGR03300 131 AKL-SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTY---SRVTPALTLRGSASPVIA--D-----GGVLVGFA 198 (377)
T ss_pred ecc-CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEE---ccCCCceeecCCCCCEEE--C-----CEEEEECC
Confidence 221 1222211111 3456777888999999999998876532 2111111 011111 1 35677778
Q ss_pred CCcEEEEEeeecc
Q 037555 223 SGVIELWSISVNR 235 (298)
Q Consensus 223 dg~i~vwd~~~~~ 235 (298)
++.+..+|.++++
T Consensus 199 ~g~v~ald~~tG~ 211 (377)
T TIGR03300 199 GGKLVALDLQTGQ 211 (377)
T ss_pred CCEEEEEEccCCC
Confidence 8899999987764
No 332
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=0.00088 Score=58.75 Aligned_cols=175 Identities=7% Similarity=0.031 Sum_probs=110.8
Q ss_pred eEEeccCCCc-eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCc------eee---eccc----cccccEEEEEEcCC
Q 037555 49 SHKLYGHGNE-LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSW------KAM---GRLQ----SHSLTVTQIRFSHD 114 (298)
Q Consensus 49 ~~~~~~h~~~-v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~------~~~---~~~~----~~~~~v~~~~~~~~ 114 (298)
.+.++.+... |.-+....+..+|++.+.|..+..-.|+||+++.- .++ +.+. ....++.+++++.+
T Consensus 57 ~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~ 136 (933)
T KOG2114|consen 57 IRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED 136 (933)
T ss_pred eehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcc
Confidence 3555666666 44444444446788877654332227999998643 222 1111 13567899999999
Q ss_pred CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC
Q 037555 115 DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP 194 (298)
Q Consensus 115 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 194 (298)
-+.+|.|-.+|.|..+.-+-.... +...........+|+.+.+..++..++.+..-..|.+|.+.... +. ...+.
T Consensus 137 l~~Iv~Gf~nG~V~~~~GDi~RDr---gsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-p~-~~~ld 211 (933)
T KOG2114|consen 137 LKTIVCGFTNGLVICYKGDILRDR---GSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT-PS-LKVLD 211 (933)
T ss_pred ccEEEEEecCcEEEEEcCcchhcc---ccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC-cc-eeeec
Confidence 899999999999999865432211 11222223346799999999888763333334679999998544 22 22455
Q ss_pred CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555 195 PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 195 ~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
.+.....|..+++.. .-+++++ +..|.+|+....
T Consensus 212 ~~G~~lnCss~~~~t-----~qfIca~-~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 212 NNGISLNCSSFSDGT-----YQFICAG-SEFLYFYDSDGR 245 (933)
T ss_pred cCCccceeeecCCCC-----ccEEEec-CceEEEEcCCCc
Confidence 677888999998876 3244443 346999988754
No 333
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.13 E-value=3.7e-05 Score=65.46 Aligned_cols=121 Identities=16% Similarity=0.207 Sum_probs=87.8
Q ss_pred CceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEee
Q 037555 153 RIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSIS 232 (298)
Q Consensus 153 ~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~ 232 (298)
..|.--+++..+.+++.|+.-|.+++|+-..++... ....+....+.....+++. .+++.|+..|.|.++.+.
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~--~~~~~~~~~~~~~~vs~~e-----~lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK--LKNEGATGITCVRSVSSVE-----YLVAAGTASGRVSVFQLN 106 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhc--ccccCccceEEEEEecchh-----HhhhhhcCCceEEeehhh
Confidence 334444556678999999999999999987766543 1223344556677788877 789999999999999887
Q ss_pred ecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 233 VNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
....... ...... ...|...|++++|++++ ..+.+|...|+|.+-.|+
T Consensus 107 ~~~p~~~--------~~~t~~--d~~~~~rVTal~Ws~~~-------~k~ysGD~~Gkv~~~~L~ 154 (726)
T KOG3621|consen 107 KELPRDL--------DYVTPC--DKSHKCRVTALEWSKNG-------MKLYSGDSQGKVVLTELD 154 (726)
T ss_pred ccCCCcc--------eeeccc--cccCCceEEEEEecccc-------cEEeecCCCceEEEEEec
Confidence 7422211 222222 22488999999999999 899999999999876654
No 334
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.09 E-value=0.0026 Score=52.81 Aligned_cols=177 Identities=15% Similarity=0.130 Sum_probs=93.8
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeec--ccc------ccccEEEEEEcC-----CC
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR--LQS------HSLTVTQIRFSH-----DD 115 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~--~~~------~~~~v~~~~~~~-----~~ 115 (298)
..-+...+++|++++.| +=-++|+| .++|.+.|.|++....+.. +.. ....++++.|.. |+
T Consensus 79 ~~l~~~~~g~vtal~~S-~iGFvaig-----y~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ 152 (395)
T PF08596_consen 79 LTLLDAKQGPVTALKNS-DIGFVAIG-----YESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG 152 (395)
T ss_dssp EEEE---S-SEEEEEE--BTSEEEEE-----ETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred hhheeccCCcEeEEecC-CCcEEEEE-----ecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence 33445568999999997 55588888 4699999999986655533 222 344678888863 33
Q ss_pred ---CEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEE-EccCC--------------------CEEEEee
Q 037555 116 ---NLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS-WNPFG--------------------HEFATGS 171 (298)
Q Consensus 116 ---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~--------------------~~l~~~~ 171 (298)
-.+++|...|.+.+|.+.....+............+.++|..+. ++.+. +-++...
T Consensus 153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 37889999999999998632222111222222234556666655 32211 1244444
Q ss_pred CCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555 172 RDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 172 ~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
.+..+|++...+.+.... .+ ........+.+-+......+..|++-..+|.|++|.+..-
T Consensus 233 Se~~irv~~~~~~k~~~K--~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L 292 (395)
T PF08596_consen 233 SESDIRVFKPPKSKGAHK--SF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL 292 (395)
T ss_dssp -SSEEEEE-TT---EEEE--E--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-
T ss_pred cccceEEEeCCCCcccce--ee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc
Confidence 467899999887766542 22 1222333444532100001167888889999999998765
No 335
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=2.3e-05 Score=65.81 Aligned_cols=96 Identities=16% Similarity=0.250 Sum_probs=76.6
Q ss_pred CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEE-EEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555 55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVT-QIRFSHDDNLLLSVSRDRQFSVFAIQ 133 (298)
Q Consensus 55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~ 133 (298)
-.-.|.-+.|+|.-.++|.+ .++|.|.+..+. .+.+.++.-+...++ +++|.|||++|+.|-.||+|++.|+.
T Consensus 19 l~~~i~~~ewnP~~dLiA~~-----t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATR-----TEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred cccceEEEEEcCccchhhee-----ccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEcc
Confidence 34568889999999999999 679999999998 777777876777777 99999999999999999999999999
Q ss_pred cCCCCccceeeeEEeeccCCceEEEEEcc
Q 037555 134 RTGTGEIDYQLIARQEAHKRIIWSCSWNP 162 (298)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 162 (298)
.+.. ...........|.++-|.+
T Consensus 93 ~~~~------l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 93 KGGR------LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred CCCc------eeccccccccchheeeccc
Confidence 7532 2222233456677777763
No 336
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.08 E-value=0.0043 Score=51.59 Aligned_cols=203 Identities=11% Similarity=0.092 Sum_probs=106.7
Q ss_pred ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee------------------------------------------
Q 037555 58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA------------------------------------------ 95 (298)
Q Consensus 58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~------------------------------------------ 95 (298)
.|+.+.|+++..-|+++- ..|.|.||.....+.
T Consensus 3 ~v~~vs~a~~t~Elav~~-----~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~ 77 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGL-----ESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFL 77 (395)
T ss_dssp -EEEEEEETTTTEEEEEE-----TTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEE
T ss_pred eEEEEEecCCCceEEEEc-----cCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccC
Confidence 478888888877788874 467777765532110
Q ss_pred -eeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEE--eec------cCCceEEEEEcc----
Q 037555 96 -MGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR--QEA------HKRIIWSCSWNP---- 162 (298)
Q Consensus 96 -~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~------~~~~v~~~~~~~---- 162 (298)
...++...++|++++.+ |--+++.|..+|.+.|.|++.+ ..+.. +.. ....++++.|..
T Consensus 78 P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGP-------avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~ 149 (395)
T PF08596_consen 78 PLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGP-------AVIYNENIRESFLSKSSSSYVTSIEFSVMTLG 149 (395)
T ss_dssp EEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTT-------EEEEEEEGGG--T-SS----EEEEEEEEEE-T
T ss_pred chhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCC-------eEEeeccccccccccccccCeeEEEEEEEecC
Confidence 11112235788999987 4448999999999999999753 22222 111 234677888863
Q ss_pred -CC---CEEEEeeCCCeEEEEEccC-Ccc--eeeeee-cCCCCCceEEEEEe-eccc---------------c-CCccEE
Q 037555 163 -FG---HEFATGSRDKTVKIWAVEN-KSS--VKQILA-LPPFNSSVTALSWV-GLDR---------------Q-KNHGFL 217 (298)
Q Consensus 163 -~~---~~l~~~~~dg~i~~wd~~~-~~~--~~~~~~-~~~~~~~v~~~~~~-~~~~---------------~-~~~~~l 217 (298)
|+ -.+++|+..|.+.+|.+.- ... ...+.. ...+.++|..+..- .+.. . .-..++
T Consensus 150 ~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~v 229 (395)
T PF08596_consen 150 GDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYV 229 (395)
T ss_dssp TSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEE
T ss_pred CCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEE
Confidence 22 4788999999999998752 111 111111 12355666665532 2111 0 001244
Q ss_pred EEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEee-----cCCCCCCCcceEEEeeeCCCcEE
Q 037555 218 AVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWK-----THEKPKNSRTMQLASCGADNTVR 292 (298)
Q Consensus 218 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~~l~s~~~d~~i~ 292 (298)
+++ .+..++++...+. +...... ........+.+- ..+ ..|++-..+|.|+
T Consensus 230 Vvv-Se~~irv~~~~~~-------------k~~~K~~---~~~~~~~~~~vv~~~~~~~~-------~~Lv~l~~~G~i~ 285 (395)
T PF08596_consen 230 VVV-SESDIRVFKPPKS-------------KGAHKSF---DDPFLCSSASVVPTISRNGG-------YCLVCLFNNGSIR 285 (395)
T ss_dssp EEE--SSEEEEE-TT----------------EEEEE----SS-EEEEEEEEEEEE-EEEE-------EEEEEEETTSEEE
T ss_pred EEE-cccceEEEeCCCC-------------cccceee---ccccccceEEEEeecccCCc-------eEEEEEECCCcEE
Confidence 444 4677999988765 3222221 122233334442 234 6888888999999
Q ss_pred EeEec
Q 037555 293 VFQVN 297 (298)
Q Consensus 293 iw~~~ 297 (298)
++.+.
T Consensus 286 i~SLP 290 (395)
T PF08596_consen 286 IYSLP 290 (395)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 99763
No 337
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.04 E-value=0.00054 Score=58.97 Aligned_cols=197 Identities=7% Similarity=-0.015 Sum_probs=115.1
Q ss_pred EEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCC----CeEEEEEeccCCCC
Q 037555 63 CCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD----RQFSVFAIQRTGTG 138 (298)
Q Consensus 63 ~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~ 138 (298)
-++|+|+.+...+ ...+.+.+.|.++.+...++.-- .....+.++|+|+++++.+.+ .++...+...
T Consensus 199 PlpnDGk~l~~~~----ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e---- 269 (635)
T PRK02888 199 PLPNDGKDLDDPK----KYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE---- 269 (635)
T ss_pred ccCCCCCEeeccc----ceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeecccc----
Confidence 3455676654443 34678888899887776665532 244678899999998887632 2222222211
Q ss_pred ccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccC-----CcceeeeeecCCCCCceEEEEEeeccccCC
Q 037555 139 EIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVEN-----KSSVKQILALPPFNSSVTALSWVGLDRQKN 213 (298)
Q Consensus 139 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (298)
......+... .+ .++.++|++... .++.|.+.|.++ ..... .++ -......+.++|++.
T Consensus 270 ---~d~~vvfni~--~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~---yIP-VGKsPHGV~vSPDGk--- 333 (635)
T PRK02888 270 ---RDWVVVFNIA--RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTR---YVP-VPKNPHGVNTSPDGK--- 333 (635)
T ss_pred ---CceEEEEchH--HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEE---EEE-CCCCccceEECCCCC---
Confidence 0001111100 00 123446766665 367899999987 33333 333 456678999999994
Q ss_pred ccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEE
Q 037555 214 HGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRV 293 (298)
Q Consensus 214 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 293 (298)
.+++++..+..|.|+|+.+.......... ........+. -.......+|.+++ +.+.|.--|..|-.
T Consensus 334 -ylyVanklS~tVSVIDv~k~k~~~~~~~~-~~~~vvaeve----vGlGPLHTaFDg~G-------~aytslf~dsqv~k 400 (635)
T PRK02888 334 -YFIANGKLSPTVTVIDVRKLDDLFDGKIK-PRDAVVAEPE----LGLGPLHTAFDGRG-------NAYTTLFLDSQIVK 400 (635)
T ss_pred -EEEEeCCCCCcEEEEEChhhhhhhhccCC-ccceEEEeec----cCCCcceEEECCCC-------CEEEeEeecceeEE
Confidence 45555666899999999875321110000 0001122221 13334556788888 78888888999999
Q ss_pred eEec
Q 037555 294 FQVN 297 (298)
Q Consensus 294 w~~~ 297 (298)
|++.
T Consensus 401 wn~~ 404 (635)
T PRK02888 401 WNIE 404 (635)
T ss_pred EehH
Confidence 9974
No 338
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=5.2e-05 Score=63.82 Aligned_cols=96 Identities=15% Similarity=0.319 Sum_probs=76.8
Q ss_pred ccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceE-EEEEccCCCEEEEeeCCCeEEEEE
Q 037555 102 HSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIW-SCSWNPFGHEFATGSRDKTVKIWA 180 (298)
Q Consensus 102 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~~wd 180 (298)
-...+.-+.|+|.-.++|.+..+|.+.+..+. +..+-.+..+...++ +++|.|||+.|++|-.||+|++.|
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n--------~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~D 90 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN--------WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHD 90 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec--------cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEE
Confidence 34567889999999999999999999998887 344555555666666 999999999999999999999999
Q ss_pred ccCCcceeeeeecCCCCCceEEEEEee
Q 037555 181 VENKSSVKQILALPPFNSSVTALSWVG 207 (298)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (298)
..++..+... .+ ....+|.++.|.+
T Consensus 91 ve~~~~l~~~-~~-s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 91 VEKGGRLVSF-LF-SVETDISKGIWDR 115 (665)
T ss_pred ccCCCceecc-cc-ccccchheeeccc
Confidence 9998876632 12 2456788888875
No 339
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.00 E-value=0.0021 Score=54.12 Aligned_cols=150 Identities=11% Similarity=0.138 Sum_probs=83.9
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEE
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFS 128 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 128 (298)
.+.+....-.+..+.++|+|+++++++ +|.-.|+.....+... .+....+.|.+ .+.+|+-...+.|.
T Consensus 25 ~k~lg~~~~~p~~ls~npngr~v~V~g------~geY~iyt~~~~r~k~-----~G~g~~~vw~~-~n~yAv~~~~~~I~ 92 (443)
T PF04053_consen 25 VKELGSCEIYPQSLSHNPNGRFVLVCG------DGEYEIYTALAWRNKA-----FGSGLSFVWSS-RNRYAVLESSSTIK 92 (443)
T ss_dssp -EEEEE-SS--SEEEE-TTSSEEEEEE------TTEEEEEETTTTEEEE-----EEE-SEEEE-T-SSEEEEE-TTS-EE
T ss_pred eccCCCCCcCCeeEEECCCCCEEEEEc------CCEEEEEEccCCcccc-----cCceeEEEEec-CccEEEEECCCeEE
Confidence 344444555688999999999999974 7888888854333322 23445688888 44577777788999
Q ss_pred EEE-eccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555 129 VFA-IQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG 207 (298)
Q Consensus 129 iwd-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (298)
++. +.. .....+.. ...+..+-. |..|...+. +.|.+||..+++.+. .+.. .+|..+.|++
T Consensus 93 I~kn~~~--------~~~k~i~~-~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~---~i~v--~~vk~V~Ws~ 154 (443)
T PF04053_consen 93 IYKNFKN--------EVVKSIKL-PFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIR---RIDV--SAVKYVIWSD 154 (443)
T ss_dssp EEETTEE---------TT------SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEE---EESS---E-EEEEE-T
T ss_pred EEEcCcc--------ccceEEcC-CcccceEEc---CcEEEEECC-CCEEEEEhhHcceee---EEec--CCCcEEEEEC
Confidence 963 322 11112221 122333332 777766665 489999999998887 4432 2389999999
Q ss_pred ccccCCccEEEEeecCCcEEEEEeeec
Q 037555 208 LDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
++ ++++..+.+ .+.|++....
T Consensus 155 ~g-----~~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 155 DG-----ELVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp TS-----SEEEEE-S--SEEEEEE-HH
T ss_pred CC-----CEEEEEeCC-eEEEEEecch
Confidence 98 677777654 6888876543
No 340
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.96 E-value=0.0013 Score=43.24 Aligned_cols=104 Identities=22% Similarity=0.225 Sum_probs=69.1
Q ss_pred EEEEEEcC---CC-CEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEc
Q 037555 106 VTQIRFSH---DD-NLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAV 181 (298)
Q Consensus 106 v~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~ 181 (298)
|+++++.. +| +.|++|+.|..|++|+-.. .+..+. ....|..+.-... ..|+.+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e---------~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE---------IVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc---------EEEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 56666654 33 5899999999999998653 344444 3466777776654 67999999999999986
Q ss_pred cCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEE
Q 037555 182 ENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIE 227 (298)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~ 227 (298)
... . . ..+ .+..+.++++.... ..+..-|++|-.+|.|-
T Consensus 71 ~~R-l-W---RiK-SK~~~~~~~~~D~~-gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 SQR-L-W---RIK-SKNQVTSMAFYDIN-GDGVPELIVGWSNGKVE 109 (111)
T ss_pred cce-e-e---eec-cCCCeEEEEEEcCC-CCCceEEEEEecCCeEE
Confidence 432 1 2 333 33446677665543 11225788998888874
No 341
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.93 E-value=3.1e-05 Score=40.33 Aligned_cols=38 Identities=29% Similarity=0.438 Sum_probs=33.1
Q ss_pred eeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 037555 94 KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFA 131 (298)
Q Consensus 94 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 131 (298)
+....+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44556667888999999999999999999999999996
No 342
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.85 E-value=0.0051 Score=51.69 Aligned_cols=48 Identities=17% Similarity=0.281 Sum_probs=37.6
Q ss_pred EEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555 84 EIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQ 133 (298)
Q Consensus 84 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 133 (298)
.|.||+.. |+.+.++.-..+.+.++.|+.+. .|+....||.+++||+.
T Consensus 62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence 59999976 77776655434899999998754 56667789999999986
No 343
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.85 E-value=0.001 Score=59.35 Aligned_cols=137 Identities=9% Similarity=0.085 Sum_probs=89.2
Q ss_pred eCCCeEEEEEeccCCCCccceeeeEEeeccCCc-eEEEEEcc-----CCCEEEEeeCCCeEEEEEccCCcc-ee--eeee
Q 037555 122 SRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRI-IWSCSWNP-----FGHEFATGSRDKTVKIWAVENKSS-VK--QILA 192 (298)
Q Consensus 122 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~-----~~~~l~~~~~dg~i~~wd~~~~~~-~~--~~~~ 192 (298)
.....|+-.|+.. ++.+..+..+... |..++-.. ....-+.|-.+..+..||.|-... +. ....
T Consensus 501 ~~~~~ly~mDLe~-------GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~ 573 (794)
T PF08553_consen 501 NNPNKLYKMDLER-------GKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQ 573 (794)
T ss_pred CCCCceEEEecCC-------CcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccc
Confidence 3457788888887 6778888877654 55443221 123456677788899999986431 11 0111
Q ss_pred cCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555 193 LPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE 272 (298)
Q Consensus 193 ~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 272 (298)
+ .......|++-..+| +||+|+.+|.||+||--.. + .+. .+.+-..+|..|..+.||
T Consensus 574 Y-~~~~~Fs~~aTt~~G------~iavgs~~G~IRLyd~~g~-------------~-AKT--~lp~lG~pI~~iDvt~DG 630 (794)
T PF08553_consen 574 Y-SSKNNFSCFATTEDG------YIAVGSNKGDIRLYDRLGK-------------R-AKT--ALPGLGDPIIGIDVTADG 630 (794)
T ss_pred c-ccCCCceEEEecCCc------eEEEEeCCCcEEeecccch-------------h-hhh--cCCCCCCCeeEEEecCCC
Confidence 1 234557777777776 8999999999999994321 1 111 144678999999999999
Q ss_pred CCCCCcceEEEeeeCCCcEEEeEe
Q 037555 273 KPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 273 ~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
.+|++.+ +..|.+++.
T Consensus 631 -------kwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 631 -------KWILATC-KTYLLLIDT 646 (794)
T ss_pred -------cEEEEee-cceEEEEEE
Confidence 5554443 456766664
No 344
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.84 E-value=0.0046 Score=51.87 Aligned_cols=171 Identities=9% Similarity=0.058 Sum_probs=96.1
Q ss_pred CceEEEEEEcCCceeeecccccc----c---cEEEEEEcC--CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc
Q 037555 81 AAAEIWLWEVGSWKAMGRLQSHS----L---TVTQIRFSH--DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH 151 (298)
Q Consensus 81 ~d~~i~vw~~~~~~~~~~~~~~~----~---~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 151 (298)
.++.+..+|..+++.+-...... . ....+.-+| .+..++.++.+|.+..+|..++. .+-... .
T Consensus 213 ~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~-------~~W~~~-~ 284 (394)
T PRK11138 213 DNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQ-------IVWKRE-Y 284 (394)
T ss_pred CCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCC-------EEEeec-C
Confidence 37788888888887654332100 0 011111223 34567777789999999987642 111111 1
Q ss_pred CCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEe
Q 037555 152 KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSI 231 (298)
Q Consensus 152 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~ 231 (298)
.....+. ..+..++.++.+|.+..+|..+++.+-...... .....+.... + ..++.++.+|.|++.|.
T Consensus 285 -~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~--~~~~~sp~v~--~-----g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 285 -GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLL--HRLLTAPVLY--N-----GYLVVGDSEGYLHWINR 352 (394)
T ss_pred -CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccC--CCcccCCEEE--C-----CEEEEEeCCCEEEEEEC
Confidence 1111122 246678888899999999999887654211111 1111222222 2 57888899999999999
Q ss_pred eecccccccCCCCCCcceeeeeccCCcccceEE-EEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 232 SVNRTNDVSTPAPSTANIIIRFDPFACHVAAVN-RMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
.++ +.+..... ....+. +..+ .+ ..|+.++.||.|..+++
T Consensus 353 ~tG-------------~~~~~~~~---~~~~~~s~P~~-~~--------~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 353 EDG-------------RFVAQQKV---DSSGFLSEPVV-AD--------DKLLIQARDGTVYAITR 393 (394)
T ss_pred CCC-------------CEEEEEEc---CCCcceeCCEE-EC--------CEEEEEeCCceEEEEeC
Confidence 887 44333321 111121 1122 23 47888899999988764
No 345
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.84 E-value=8e-05 Score=38.66 Aligned_cols=38 Identities=29% Similarity=0.552 Sum_probs=33.0
Q ss_pred eeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEE
Q 037555 143 QLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWA 180 (298)
Q Consensus 143 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd 180 (298)
.....+..|...|.++.|++.++.+++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 34556667888999999999999999999999999996
No 346
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.79 E-value=0.0053 Score=51.79 Aligned_cols=140 Identities=19% Similarity=0.321 Sum_probs=77.0
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEE-Ec
Q 037555 103 SLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIW-AV 181 (298)
Q Consensus 103 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w-d~ 181 (298)
......+.++|+|+.+++++ ||...++.... .+... .+.-...+|.+ .+.+|+-...+.|.++ ++
T Consensus 32 ~~~p~~ls~npngr~v~V~g-~geY~iyt~~~-------~r~k~-----~G~g~~~vw~~-~n~yAv~~~~~~I~I~kn~ 97 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCG-DGEYEIYTALA-------WRNKA-----FGSGLSFVWSS-RNRYAVLESSSTIKIYKNF 97 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEE-TTEEEEEETTT-------TEEEE-----EEE-SEEEE-T-SSEEEEE-TTS-EEEEETT
T ss_pred CcCCeeEEECCCCCEEEEEc-CCEEEEEEccC-------Ccccc-----cCceeEEEEec-CccEEEEECCCeEEEEEcC
Confidence 34467899999999988855 77777887432 22211 23345678888 5567777778889996 33
Q ss_pred cCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccc
Q 037555 182 ENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVA 261 (298)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (298)
+. .... .+. .+..+..+-. | .+|+..+. +.|.+||..++ +.+..+. -.
T Consensus 98 ~~-~~~k---~i~-~~~~~~~If~---G-----~LL~~~~~-~~i~~yDw~~~-------------~~i~~i~-----v~ 145 (443)
T PF04053_consen 98 KN-EVVK---SIK-LPFSVEKIFG---G-----NLLGVKSS-DFICFYDWETG-------------KLIRRID-----VS 145 (443)
T ss_dssp EE--TT---------SS-EEEEE----S-----SSEEEEET-TEEEEE-TTT---------------EEEEES-----S-
T ss_pred cc-ccce---EEc-CCcccceEEc---C-----cEEEEECC-CCEEEEEhhHc-------------ceeeEEe-----cC
Confidence 32 2222 121 1222333333 4 45666554 48999999887 6666654 23
Q ss_pred eEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 262 AVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 262 ~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
+|..+.|++++ .+++-.+.+ .+.|++.
T Consensus 146 ~vk~V~Ws~~g-------~~val~t~~-~i~il~~ 172 (443)
T PF04053_consen 146 AVKYVIWSDDG-------ELVALVTKD-SIYILKY 172 (443)
T ss_dssp E-EEEEE-TTS-------SEEEEE-S--SEEEEEE
T ss_pred CCcEEEEECCC-------CEEEEEeCC-eEEEEEe
Confidence 48999999998 788887755 5777654
No 347
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.016 Score=48.30 Aligned_cols=158 Identities=11% Similarity=0.100 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC---CCeEEEEEeccC
Q 037555 59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR---DRQFSVFAIQRT 135 (298)
Q Consensus 59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~ 135 (298)
-..++.++.+..+..... .+..|.+.|..+.+......... ....++++|+++.+.++.. ++++.+.|..+
T Consensus 76 p~~i~v~~~~~~vyv~~~----~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t- 149 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTG----DSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT- 149 (381)
T ss_pred ccceeeCCCCCeEEEecC----CCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCC-
Confidence 446788888886655532 36889999987777666554222 5678999999987776655 67888888776
Q ss_pred CCCccceeeeEEeeccCCceEEEEEccCCCEEEEee-CCCeEEEEEccCCccee-eeeecCCCCCceEEEEEeeccccCC
Q 037555 136 GTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS-RDKTVKIWAVENKSSVK-QILALPPFNSSVTALSWVGLDRQKN 213 (298)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (298)
.........-..+ ..+++.|+++.++... .++.|.+.|........ ..............+.+.|++
T Consensus 150 ------~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g---- 218 (381)
T COG3391 150 ------NKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDG---- 218 (381)
T ss_pred ------CeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCC----
Confidence 3444443333334 8899999999776665 78899999977654431 000011223445678999988
Q ss_pred ccEEEEeec-C--CcEEEEEeeec
Q 037555 214 HGFLAVGME-S--GVIELWSISVN 234 (298)
Q Consensus 214 ~~~l~~g~~-d--g~i~vwd~~~~ 234 (298)
..+..... + +.+...|..++
T Consensus 219 -~~~yV~~~~~~~~~v~~id~~~~ 241 (381)
T COG3391 219 -NRVYVANDGSGSNNVLKIDTATG 241 (381)
T ss_pred -CEEEEEeccCCCceEEEEeCCCc
Confidence 44444433 3 57888887765
No 348
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.78 E-value=0.014 Score=47.51 Aligned_cols=202 Identities=14% Similarity=0.103 Sum_probs=107.8
Q ss_pred CCEEEeEeccCC----CCc-eEEEEEEcCCc----eeeecc--ccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCC
Q 037555 68 GKLVASSCKAQS----TAA-AEIWLWEVGSW----KAMGRL--QSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136 (298)
Q Consensus 68 ~~~l~~~~~~~~----~~d-~~i~vw~~~~~----~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 136 (298)
..+|++|..-.. ... |.|.++++.+. ..+..+ ....++|++++-- ++. |+++. .+.|.+|++....
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK 118 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence 467777654110 112 99999999873 122222 2357788888776 443 44333 5899999998743
Q ss_pred CCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCC-cceeeeeecCCCCCceEEEEEeeccccCCcc
Q 037555 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENK-SSVKQILALPPFNSSVTALSWVGLDRQKNHG 215 (298)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (298)
. ........ ....+.++... ++++++|.....+.++..+.. ..+..+.. ......++++.+-+++ .
T Consensus 119 ~----l~~~~~~~-~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~-----~ 185 (321)
T PF03178_consen 119 T----LLKKAFYD-SPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDE-----D 185 (321)
T ss_dssp S----EEEEEEE--BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SS-----S
T ss_pred c----chhhheec-ceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEe-cCCCccEEEEEEecCC-----c
Confidence 1 11222222 22355666554 669999998888888765542 22332222 2235568888888766 5
Q ss_pred EEEEeecCCcEEEEEeeecccccccCCCCC-CcceeeeeccCCcccceEEEE---EeecC--CCCCCCcceEEEeeeCCC
Q 037555 216 FLAVGMESGVIELWSISVNRTNDVSTPAPS-TANIIIRFDPFACHVAAVNRM---AWKTH--EKPKNSRTMQLASCGADN 289 (298)
Q Consensus 216 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~---~~~~~--~~~~~~~~~~l~s~~~d~ 289 (298)
.++.+..+|.|.++.......... ... .......++ ....|+++ ++.|. .. .......++.++.+|
T Consensus 186 ~~i~~D~~gnl~~l~~~~~~~~~~---~~~~~L~~~~~f~----lg~~v~~~~~~~l~~~~~~~-~~~~~~~i~~~T~~G 257 (321)
T PF03178_consen 186 TIIVGDKDGNLFVLRYNPEIPNSR---DGDPKLERISSFH----LGDIVNSFRRGSLIPRSGSS-ESPNRPQILYGTVDG 257 (321)
T ss_dssp EEEEEETTSEEEEEEE-SS-SSTT---TTTTBEEEEEEEE-----SS-EEEEEE--SS--SSSS--TTEEEEEEEEETTS
T ss_pred EEEEEcCCCeEEEEEECCCCcccc---cccccceeEEEEE----CCCccceEEEEEeeecCCCC-cccccceEEEEecCC
Confidence 899999999999999864211110 000 112222222 34567777 55552 20 000113578888899
Q ss_pred cEEE
Q 037555 290 TVRV 293 (298)
Q Consensus 290 ~i~i 293 (298)
.|.+
T Consensus 258 ~Ig~ 261 (321)
T PF03178_consen 258 SIGV 261 (321)
T ss_dssp -EEE
T ss_pred EEEE
Confidence 8873
No 349
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.78 E-value=0.014 Score=48.13 Aligned_cols=100 Identities=10% Similarity=0.131 Sum_probs=60.7
Q ss_pred cCCCCEEEeEeccC----CCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc
Q 037555 65 DHQGKLVASSCKAQ----STAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI 140 (298)
Q Consensus 65 s~~~~~l~~~~~~~----~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 140 (298)
|||+++++...... .+..+.+.|+|+.+++....... ...+....|+|+|+.++-.. ++.|.+++......
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~--- 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE--- 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE---
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCe---
Confidence 57888777642210 12257899999998766554443 67788999999999888776 67888887654311
Q ss_pred ceeeeEEeec-------c---------CCceEEEEEccCCCEEEEeeC
Q 037555 141 DYQLIARQEA-------H---------KRIIWSCSWNPFGHEFATGSR 172 (298)
Q Consensus 141 ~~~~~~~~~~-------~---------~~~v~~~~~~~~~~~l~~~~~ 172 (298)
..+ +..+ - -+.-..+.|+|++++|+....
T Consensus 76 --~~l-T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 76 --TQL-TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp --EES-ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred --EEe-ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 001 0011 0 112256889999988877653
No 350
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.74 E-value=0.014 Score=46.64 Aligned_cols=201 Identities=12% Similarity=0.108 Sum_probs=115.4
Q ss_pred EEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCc
Q 037555 60 FSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGE 139 (298)
Q Consensus 60 ~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 139 (298)
..++++.+++++..... +....|.|.|+...+.+..+.. .+ +..+-=.. ..-+.+.+.||.+.-..+.......
T Consensus 98 ~~~~ls~dgk~~~V~N~---TPa~SVtVVDl~~~kvv~ei~~-PG-C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNF---TPATSVTVVDLAAKKVVGEIDT-PG-CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEA 171 (342)
T ss_dssp GGEEE-TTSSEEEEEEE---SSSEEEEEEETTTTEEEEEEEG-TS-EEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEE
T ss_pred cceEEccCCcEEEEEcc---CCCCeEEEEECCCCceeeeecC-CC-EEEEEecC-CCceEEEecCCceEEEEECCCCCEe
Confidence 35678889998888766 5577899999998888877652 22 22222122 2457788889999999998654322
Q ss_pred cceeeeEEeeccCCceE-EEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCC----------CCCceEEEEEeec
Q 037555 140 IDYQLIARQEAHKRIIW-SCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPP----------FNSSVTALSWVGL 208 (298)
Q Consensus 140 ~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~ 208 (298)
......+.....++. .-++...+..++..+.+|.|+--|+....... ...+.. .++.-.-+++++.
T Consensus 172 --~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~-~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~ 248 (342)
T PF06433_consen 172 --QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKF-GKPWSLLTDAEKADGWRPGGWQLIAYHAA 248 (342)
T ss_dssp --EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEE-EEEEESS-HHHHHTTEEE-SSS-EEEETT
T ss_pred --EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccc-cCcccccCccccccCcCCcceeeeeeccc
Confidence 111122222233332 33445556677778899999999987654321 111111 1122334555554
Q ss_pred cccCCccEEEEee--------cCC--cEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCc
Q 037555 209 DRQKNHGFLAVGM--------ESG--VIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSR 278 (298)
Q Consensus 209 ~~~~~~~~l~~g~--------~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 278 (298)
. +.|.+-. .|+ .|.++|+.+. +.+.++. -..++.+|..+.+.+
T Consensus 249 ~-----~rlyvLMh~g~~gsHKdpgteVWv~D~~t~-------------krv~Ri~----l~~~~~Si~Vsqd~~----- 301 (342)
T PF06433_consen 249 S-----GRLYVLMHQGGEGSHKDPGTEVWVYDLKTH-------------KRVARIP----LEHPIDSIAVSQDDK----- 301 (342)
T ss_dssp T-----TEEEEEEEE--TT-TTS-EEEEEEEETTTT-------------EEEEEEE----EEEEESEEEEESSSS-----
T ss_pred c-----CeEEEEecCCCCCCccCCceEEEEEECCCC-------------eEEEEEe----CCCccceEEEccCCC-----
Confidence 3 2333321 122 4556666655 5555553 245788999999874
Q ss_pred ceEEEe-eeCCCcEEEeEec
Q 037555 279 TMQLAS-CGADNTVRVFQVN 297 (298)
Q Consensus 279 ~~~l~s-~~~d~~i~iw~~~ 297 (298)
.+|++ ...++.|.+||..
T Consensus 302 -P~L~~~~~~~~~l~v~D~~ 320 (342)
T PF06433_consen 302 -PLLYALSAGDGTLDVYDAA 320 (342)
T ss_dssp --EEEEEETTTTEEEEEETT
T ss_pred -cEEEEEcCCCCeEEEEeCc
Confidence 46654 4568999999863
No 351
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.73 E-value=0.0072 Score=53.03 Aligned_cols=162 Identities=18% Similarity=0.224 Sum_probs=88.9
Q ss_pred CceEEEEEcCCCCEEEeEec--cC-CCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCC-CeEEEEEe
Q 037555 57 NELFSLCCDHQGKLVASSCK--AQ-STAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD-RQFSVFAI 132 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~--~~-~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i~iwd~ 132 (298)
..+...+++|+|+.++..-. +. .+....|.+++.. +.. ..+.. ....+.-.|+|+|..+.+.... ..+++.+.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 46789999999998877742 00 0123466666653 222 22321 2237888999998877776533 22222221
Q ss_pred ccCCCCccc-----eeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEE---EEccCCc-ceeeeeec-CCCCCceEE
Q 037555 133 QRTGTGEID-----YQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKI---WAVENKS-SVKQILAL-PPFNSSVTA 202 (298)
Q Consensus 133 ~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~---wd~~~~~-~~~~~~~~-~~~~~~v~~ 202 (298)
... .... ...... .....|..+.|+|||..++... ++.|.+ -....+. .+.....+ ......+.+
T Consensus 427 ~~~--gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 427 PAT--GQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS 501 (591)
T ss_pred CCC--ceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence 110 0000 000010 2346799999999999888776 477776 3333332 11100112 123344688
Q ss_pred EEEeeccccCCccEEEEeecCCcEEEEEee
Q 037555 203 LSWVGLDRQKNHGFLAVGMESGVIELWSIS 232 (298)
Q Consensus 203 ~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~ 232 (298)
+.|.+++ . |+++..++.-.+|.+.
T Consensus 502 l~W~~~~-----~-L~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 502 LDWRTGD-----S-LVVGRSDPEHPVWYVN 525 (591)
T ss_pred ceEecCC-----E-EEEEecCCCCceEEEe
Confidence 9999987 4 4566655555566654
No 352
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.73 E-value=0.012 Score=45.62 Aligned_cols=173 Identities=13% Similarity=0.132 Sum_probs=109.3
Q ss_pred eccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc-ccccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 037555 52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS-HSLTVTQIRFSHDDNLLLSVSRDRQFSVF 130 (298)
Q Consensus 52 ~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 130 (298)
+.|-...|.++.|+|+.+.|.+.. ....-.|+=..+|+.+.++.- .-.....+++..++++.++--.++.+.++
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~-----n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~ 155 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVT-----NKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLF 155 (316)
T ss_pred cccccccccceeeCCCcceEEEec-----CCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEE
Confidence 456666799999999998888873 345555555556888877541 12234568888888888888889999999
Q ss_pred EeccCCCCccceeeeEEee--cc-CCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCC-------CCce
Q 037555 131 AIQRTGTGEIDYQLIARQE--AH-KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF-------NSSV 200 (298)
Q Consensus 131 d~~~~~~~~~~~~~~~~~~--~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~-------~~~v 200 (298)
.+...............+. .+ +.....++|.|....|..+-.-.-+.||................+ -..+
T Consensus 156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred EEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 8876432111011011111 12 456788999999988888887777788776643321111111111 1236
Q ss_pred EEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555 201 TALSWVGLDRQKNHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 233 (298)
.++.|++... .+++-+.+++.+.-.|...
T Consensus 236 Sgl~~~~~~~----~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 236 SGLEFNAITN----SLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ccceecCCCC----cEEEEecCCceEEEEecCC
Confidence 6777776542 6777777888877777654
No 353
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.70 E-value=0.0052 Score=40.43 Aligned_cols=105 Identities=19% Similarity=0.238 Sum_probs=67.0
Q ss_pred eEEEEEcc---CC-CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEE
Q 037555 155 IWSCSWNP---FG-HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWS 230 (298)
Q Consensus 155 v~~~~~~~---~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd 230 (298)
|+++++.. ++ +.|++|+.|..||+|+-. +.+. .+. ....|++++-...+ .++.+..+|+|-+|+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~---Ei~-e~~~v~~L~~~~~~------~F~Y~l~NGTVGvY~ 69 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVA---EIT-ETDKVTSLCSLGGG------RFAYALANGTVGVYD 69 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEE---EEe-cccceEEEEEcCCC------EEEEEecCCEEEEEe
Confidence 55666554 22 689999999999999754 3344 333 34667777776654 689999999999997
Q ss_pred eeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEE
Q 037555 231 ISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRV 293 (298)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 293 (298)
-.. .+.++. ....+.++++..-. .++..-|++|=.+|.|-+
T Consensus 70 ~~~---------------RlWRiK----SK~~~~~~~~~D~~---gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 70 RSQ---------------RLWRIK----SKNQVTSMAFYDIN---GDGVPELIVGWSNGKVEV 110 (111)
T ss_pred Ccc---------------eeeeec----cCCCeEEEEEEcCC---CCCceEEEEEecCCeEEe
Confidence 642 223322 22335555554322 011257888888888753
No 354
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.0026 Score=53.07 Aligned_cols=137 Identities=10% Similarity=0.091 Sum_probs=92.5
Q ss_pred CceEEEEEEcCCceeeeccccccccEEEEEEcCCCC-------EEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc--
Q 037555 81 AAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDN-------LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH-- 151 (298)
Q Consensus 81 ~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-- 151 (298)
....|+-.|++.|+.+....-+.. |.-+.+.|+.+ .-+.|-.+..|+-||++..... .+.....|
T Consensus 354 ~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-----kl~~~q~kqy 427 (644)
T KOG2395|consen 354 EQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-----KLAVVQSKQY 427 (644)
T ss_pred CcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-----eeeeeecccc
Confidence 356688889999999988876555 77778888653 2334556788889998854321 12222222
Q ss_pred --CCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEE
Q 037555 152 --KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELW 229 (298)
Q Consensus 152 --~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vw 229 (298)
.....|.+-. ...++++|+.+|.||+||-- +.... ..+++...+|..+..+.+| .+|+..+ +..+.+.
T Consensus 428 ~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdri-~~~AK--TAlPgLG~~I~hVdvtadG-----Kwil~Tc-~tyLlLi 497 (644)
T KOG2395|consen 428 STKNNFSCFATT-ESGYIVVGSLKGDIRLYDRI-GRRAK--TALPGLGDAIKHVDVTADG-----KWILATC-KTYLLLI 497 (644)
T ss_pred ccccccceeeec-CCceEEEeecCCcEEeehhh-hhhhh--hcccccCCceeeEEeeccC-----cEEEEec-ccEEEEE
Confidence 1233444444 34589999999999999973 33222 2678889999999999998 5666555 5667777
Q ss_pred Eeee
Q 037555 230 SISV 233 (298)
Q Consensus 230 d~~~ 233 (298)
++.-
T Consensus 498 ~t~~ 501 (644)
T KOG2395|consen 498 DTLI 501 (644)
T ss_pred EEec
Confidence 7753
No 355
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.58 E-value=9e-05 Score=54.73 Aligned_cols=143 Identities=13% Similarity=0.102 Sum_probs=78.2
Q ss_pred EEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCC
Q 037555 117 LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF 196 (298)
Q Consensus 117 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 196 (298)
.+..-+.||.|+-++++.... ..+....+... .....-+..++.|+.+|.|.+|........... ....
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~------s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~--~~s~ 100 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKE------SCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDR--VCSG 100 (238)
T ss_pred hhccccCCcccccchhhhhhh------hhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHh--hhcc
Confidence 344556678888777765221 01111112111 111223568999999999999987632222211 1112
Q ss_pred CCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCccc-ceEEEEEeecCCCCC
Q 037555 197 NSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHV-AAVNRMAWKTHEKPK 275 (298)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~ 275 (298)
...|-++. |.+. .+.+..+++.+|.|+.|++...+ .+.. ...|. .++..+..+..+
T Consensus 101 ~e~i~~~I--p~~~--~~~~~c~~~~dg~ir~~n~~p~k-------------~~g~---~g~h~~~~~e~~ivv~sd--- 157 (238)
T KOG2444|consen 101 EESIDLGI--PNGR--DSSLGCVGAQDGRIRACNIKPNK-------------VLGY---VGQHNFESGEELIVVGSD--- 157 (238)
T ss_pred cccceecc--cccc--ccceeEEeccCCceeeeccccCc-------------eeee---eccccCCCcceeEEecCC---
Confidence 22332222 2221 11588899999999999987652 2222 22354 455555555555
Q ss_pred CCcceEEEee--eCCCcEEEeEec
Q 037555 276 NSRTMQLASC--GADNTVRVFQVN 297 (298)
Q Consensus 276 ~~~~~~l~s~--~~d~~i~iw~~~ 297 (298)
..++.+ |.|..++.|++.
T Consensus 158 ----~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 158 ----EFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ----ceEEeeccccchhhhhcchh
Confidence 577777 778888888764
No 356
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.52 E-value=0.038 Score=45.67 Aligned_cols=175 Identities=11% Similarity=0.129 Sum_probs=89.7
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeec-cccc----------------cccEEEEEE
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR-LQSH----------------SLTVTQIRF 111 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~-~~~~----------------~~~v~~~~~ 111 (298)
...+......+....|||+|+.+|... ++.|.+++..+++..+. ..+. -+.-..+.|
T Consensus 35 ~~~l~~~~~~~~~~~~sP~g~~~~~v~------~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~W 108 (353)
T PF00930_consen 35 ITPLTPPPPKLQDAKWSPDGKYIAFVR------DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWW 108 (353)
T ss_dssp EEESS-EETTBSEEEE-SSSTEEEEEE------TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE
T ss_pred eEECcCCccccccceeecCCCeeEEEe------cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEE
Confidence 333433356788999999999999984 68899999876644322 1120 012256889
Q ss_pred cCCCCEEEEEeCC-CeEEEEEeccCCCC----------------cc------------cee--eeEEe---eccCCceEE
Q 037555 112 SHDDNLLLSVSRD-RQFSVFAIQRTGTG----------------EI------------DYQ--LIARQ---EAHKRIIWS 157 (298)
Q Consensus 112 ~~~~~~l~~~~~d-g~i~iwd~~~~~~~----------------~~------------~~~--~~~~~---~~~~~~v~~ 157 (298)
+||+++|+....| ..+..+.+...... .. ..+ .+... ......+..
T Consensus 109 Spd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~ 188 (353)
T PF00930_consen 109 SPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTR 188 (353)
T ss_dssp -TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEE
T ss_pred CCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCccc
Confidence 9999988876543 22222222111000 00 000 00000 122445778
Q ss_pred EEEccCCCEEEEee--CC---CeEEEEEccCCcceeeeeecC-CCCCceEEEEEe-eccccCCccEEEEeecCCcEEEEE
Q 037555 158 CSWNPFGHEFATGS--RD---KTVKIWAVENKSSVKQILALP-PFNSSVTALSWV-GLDRQKNHGFLAVGMESGVIELWS 230 (298)
Q Consensus 158 ~~~~~~~~~l~~~~--~d---g~i~~wd~~~~~~~~~~~~~~-~~~~~v~~~~~~-~~~~~~~~~~l~~g~~dg~i~vwd 230 (298)
+.|.+++..|+..- .+ -.+.+.|..++.......... +--..-....+. +++. .++.....+|--+||-
T Consensus 189 v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~----~~l~~s~~~G~~hly~ 264 (353)
T PF00930_consen 189 VGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGN----EFLWISERDGYRHLYL 264 (353)
T ss_dssp EEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSS----EEEEEEETTSSEEEEE
T ss_pred ceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCC----EEEEEEEcCCCcEEEE
Confidence 88999888444432 22 236667776655433221111 111122344544 4442 6777777888766666
Q ss_pred eee
Q 037555 231 ISV 233 (298)
Q Consensus 231 ~~~ 233 (298)
+..
T Consensus 265 ~~~ 267 (353)
T PF00930_consen 265 YDL 267 (353)
T ss_dssp EET
T ss_pred Ecc
Confidence 554
No 357
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.52 E-value=0.0047 Score=47.57 Aligned_cols=166 Identities=10% Similarity=0.129 Sum_probs=95.7
Q ss_pred EEcCCCCEEEeEeccCCCCceEEEEEEcCCc-eeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEE--------Eec
Q 037555 63 CCDHQGKLVASSCKAQSTAAAEIWLWEVGSW-KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVF--------AIQ 133 (298)
Q Consensus 63 ~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw--------d~~ 133 (298)
.|||||.+|...-.|.+...|.|-|||...+ +.+..+..|.-.-..+.|.+||+.++.+.. -|..- +++
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNld 197 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLD 197 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC--ceecccccCccccchh
Confidence 5899999999987766666789999998743 456678888888899999999999887642 22222 111
Q ss_pred cCCCCcc-----ceeeeE--Eee--ccCCceEEEEEccCCCEEEEeeCCCe-----EEEEEccCCcceeeeeecC-----
Q 037555 134 RTGTGEI-----DYQLIA--RQE--AHKRIIWSCSWNPFGHEFATGSRDKT-----VKIWAVENKSSVKQILALP----- 194 (298)
Q Consensus 134 ~~~~~~~-----~~~~~~--~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~~wd~~~~~~~~~~~~~~----- 194 (298)
..+.... .+.++. ++. .+.-.|..++..+++..++.+-..|. ..+=-.+.++.+..+ .++
T Consensus 198 sMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~-~~pee~~~ 276 (366)
T COG3490 198 SMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFL-DLPEEQTA 276 (366)
T ss_pred hcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCccc-CCCHHHHH
Confidence 1110000 011111 111 23345777888877776666544331 111111122222211 111
Q ss_pred CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecc
Q 037555 195 PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNR 235 (298)
Q Consensus 195 ~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 235 (298)
.....|-+++.+.... .+.+++-..+...+||..++.
T Consensus 277 ~~anYigsiA~n~~~g----lV~lTSP~GN~~vi~da~tG~ 313 (366)
T COG3490 277 AFANYIGSIAANRRDG----LVALTSPRGNRAVIWDAATGA 313 (366)
T ss_pred HHHhhhhheeecccCC----eEEEecCCCCeEEEEEcCCCc
Confidence 1234577888876551 344444455678899999874
No 358
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.52 E-value=0.026 Score=43.69 Aligned_cols=171 Identities=11% Similarity=0.111 Sum_probs=90.7
Q ss_pred cccccccEEEEEEcCCCC-EEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc-CCceEEEEEccCCCEEEEeeCCCeE
Q 037555 99 LQSHSLTVTQIRFSHDDN-LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH-KRIIWSCSWNPFGHEFATGSRDKTV 176 (298)
Q Consensus 99 ~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i 176 (298)
+.+-...+..++|.|+.+ ++++....+.|..++.+ ++.+..+.-. .+-.-.|++..++.++++--.++.+
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~--------G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L 88 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD--------GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRL 88 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT----------EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEE
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC--------CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcE
Confidence 445555699999999755 56666667787766654 3444444322 2456788888767666655568999
Q ss_pred EEEEccCCcc---eeeee--e--cC-CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcc
Q 037555 177 KIWAVENKSS---VKQIL--A--LP-PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTAN 248 (298)
Q Consensus 177 ~~wd~~~~~~---~~~~~--~--~~-~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 248 (298)
.++++..... ..... . +. ..+..+-.++|.|.+ +.|+.+-+..-..+|.++....... -
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~-----~~L~v~kE~~P~~l~~~~~~~~~~~--------~ 155 (248)
T PF06977_consen 89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT-----NRLFVAKERKPKRLYEVNGFPGGFD--------L 155 (248)
T ss_dssp EEEEE----TT--EEEEEEEE---S---SS--EEEEEETTT-----TEEEEEEESSSEEEEEEESTT-SS----------
T ss_pred EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCC-----CEEEEEeCCCChhhEEEccccCccc--------e
Confidence 9998843221 11111 1 11 244568999999987 5666677777777888765210000 0
Q ss_pred eeee---eccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 249 IIIR---FDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 249 ~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
.... +.........+.+++++|... .+++....+..|..+|.
T Consensus 156 ~~~~~~~~~~~~~~~~d~S~l~~~p~t~------~lliLS~es~~l~~~d~ 200 (248)
T PF06977_consen 156 FVSDDQDLDDDKLFVRDLSGLSYDPRTG------HLLILSDESRLLLELDR 200 (248)
T ss_dssp EEEE-HHHH-HT--SS---EEEEETTTT------EEEEEETTTTEEEEE-T
T ss_pred eeccccccccccceeccccceEEcCCCC------eEEEEECCCCeEEEECC
Confidence 0000 010112334578899998752 67777777777766653
No 359
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.51 E-value=0.0038 Score=52.42 Aligned_cols=139 Identities=14% Similarity=0.134 Sum_probs=80.6
Q ss_pred ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEE-eCCCeEEEEEeccCC
Q 037555 58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSV-SRDRQFSVFAIQRTG 136 (298)
Q Consensus 58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~ 136 (298)
.-...+|+|||+.|+.+... ...-.|+++|+......+ +....+.-..=.|+|||+.++-. +..|.-.||-.....
T Consensus 239 ~~~~P~fspDG~~l~f~~~r--dg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g 315 (425)
T COG0823 239 NNGAPAFSPDGSKLAFSSSR--DGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEG 315 (425)
T ss_pred ccCCccCCCCCCEEEEEECC--CCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCC
Confidence 33467899999988877642 234578888887666333 44333333366799999976654 456665666554332
Q ss_pred CCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC-Ce--EEEEEccCCcceeeeeecCCCCCceEEEEEeecc
Q 037555 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD-KT--VKIWAVENKSSVKQILALPPFNSSVTALSWVGLD 209 (298)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~--i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (298)
. ....+......-..-.|+|+|.+|+..+.. |. |.+.|+.++.... .+. .......-.|.+++
T Consensus 316 ~------~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~---~lt-~~~~~e~ps~~~ng 381 (425)
T COG0823 316 S------QVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIR---ILT-STYLNESPSWAPNG 381 (425)
T ss_pred C------ceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEE---Ecc-ccccCCCCCcCCCC
Confidence 1 122333222222367899999999888753 44 6666665555322 222 23333345555655
No 360
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.0047 Score=51.57 Aligned_cols=145 Identities=14% Similarity=0.201 Sum_probs=89.6
Q ss_pred CCCEE-EEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCC-------EEEEeeCCCeEEEEEccCCc
Q 037555 114 DDNLL-LSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGH-------EFATGSRDKTVKIWAVENKS 185 (298)
Q Consensus 114 ~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~~~dg~i~~wd~~~~~ 185 (298)
+.++| .++.....++-.|++. ++.+.....+.. |.-+.+.|+.. .=+.|=.|..|.-||.|-..
T Consensus 344 dsnlil~~~~~~~~l~klDIE~-------GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~ 415 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIER-------GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQG 415 (644)
T ss_pred ccceEeeCCCCcCcceeeeccc-------ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccC
Confidence 33433 3445556677778877 677777777666 77777777542 12345567889999998433
Q ss_pred ceeeeeecCC----CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccc
Q 037555 186 SVKQILALPP----FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVA 261 (298)
Q Consensus 186 ~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (298)
. ..+...+. ......|.+-..+| +|++|+.+|.|++||. .+++. +.. +.+...
T Consensus 416 ~-~kl~~~q~kqy~~k~nFsc~aTT~sG------~IvvgS~~GdIRLYdr-i~~~A-------------KTA--lPgLG~ 472 (644)
T KOG2395|consen 416 K-NKLAVVQSKQYSTKNNFSCFATTESG------YIVVGSLKGDIRLYDR-IGRRA-------------KTA--LPGLGD 472 (644)
T ss_pred c-ceeeeeeccccccccccceeeecCCc------eEEEeecCCcEEeehh-hhhhh-------------hhc--ccccCC
Confidence 2 11111111 22334556555554 8999999999999997 33211 111 557789
Q ss_pred eEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 262 AVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 262 ~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+|..+..+.+|+ ..|+|| +..|.+-++.
T Consensus 473 ~I~hVdvtadGK------wil~Tc--~tyLlLi~t~ 500 (644)
T KOG2395|consen 473 AIKHVDVTADGK------WILATC--KTYLLLIDTL 500 (644)
T ss_pred ceeeEEeeccCc------EEEEec--ccEEEEEEEe
Confidence 999999999993 333443 5566665543
No 361
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.044 Score=45.75 Aligned_cols=160 Identities=11% Similarity=0.079 Sum_probs=108.5
Q ss_pred ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe-CCCeEEEEEeccCC
Q 037555 58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS-RDRQFSVFAIQRTG 136 (298)
Q Consensus 58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~ 136 (298)
....++++++++.+..+... ..++.+.+.|..+++.......-..+ ..+++.|+|+.+..+. .++.|.+.|.....
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~--~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~ 193 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAG--NGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNS 193 (381)
T ss_pred CCceEEECCCCCEEEEEecc--cCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcc
Confidence 56688999999888877531 03689999999988887775433344 8999999999666655 78999999966521
Q ss_pred CCccceeeeE-E---eeccCCceEEEEEccCCCEEEEeeCC---CeEEEEEccCCcceeeeeecCCCCCceEEEEEeecc
Q 037555 137 TGEIDYQLIA-R---QEAHKRIIWSCSWNPFGHEFATGSRD---KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLD 209 (298)
Q Consensus 137 ~~~~~~~~~~-~---~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (298)
... . .......-..+.++|+++++++.-.. +.+...|..+........... .. ....+...|.+
T Consensus 194 -------v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~-~~-~~~~v~~~p~g 264 (381)
T COG3391 194 -------VVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVG-SG-APRGVAVDPAG 264 (381)
T ss_pred -------eeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccc-cC-CCCceeECCCC
Confidence 121 0 11122334678899999877665543 588999988876654211111 22 45678999998
Q ss_pred ccCCccEEEEe-ecCCcEEEEEeeec
Q 037555 210 RQKNHGFLAVG-MESGVIELWSISVN 234 (298)
Q Consensus 210 ~~~~~~~l~~g-~~dg~i~vwd~~~~ 234 (298)
.++.+. +..+.+.+.|..+.
T Consensus 265 -----~~~yv~~~~~~~V~vid~~~~ 285 (381)
T COG3391 265 -----KAAYVANSQGGTVSVIDGATD 285 (381)
T ss_pred -----CEEEEEecCCCeEEEEeCCCC
Confidence 566655 44578888888765
No 362
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.47 E-value=0.005 Score=53.29 Aligned_cols=109 Identities=11% Similarity=0.145 Sum_probs=73.4
Q ss_pred CCCCEEEeEeccCCCCceEEEEEEcCC-----ceeeeccccccccEEEEEEcCCCCEEEEEeC-CCeEEEEEeccCCCC-
Q 037555 66 HQGKLVASSCKAQSTAAAEIWLWEVGS-----WKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR-DRQFSVFAIQRTGTG- 138 (298)
Q Consensus 66 ~~~~~l~~~~~~~~~~d~~i~vw~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~- 138 (298)
++|++...+ ++.|.+.|..+ .+.+..+. -......+.++|||+++++++. +.++.|.|+......
T Consensus 286 kdGK~~~V~-------gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~ 357 (635)
T PRK02888 286 KAGKFKTIG-------GSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF 357 (635)
T ss_pred hCCCEEEEC-------CCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence 356655554 56899999887 34444444 3455688999999998776654 899999999874310
Q ss_pred ----ccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccC
Q 037555 139 ----EIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVEN 183 (298)
Q Consensus 139 ----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 183 (298)
........+..--.+ -...+|.++|+.+.+..-|..|..||+..
T Consensus 358 ~~~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 358 DGKIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hccCCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence 000112222222222 34578899998888888999999999876
No 363
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.00095 Score=60.04 Aligned_cols=106 Identities=11% Similarity=0.210 Sum_probs=72.9
Q ss_pred CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCC
Q 037555 163 FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTP 242 (298)
Q Consensus 163 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 242 (298)
.+..++.|+..|.+...|+...-.. +..-...+++|++++|+.++ .+++.|-.+|.|.+||+..+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~--~~~ne~v~~~Vtsvafn~dg-----~~l~~G~~~G~V~v~D~~~~-------- 162 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGP--LHQNERVQGPVTSVAFNQDG-----SLLLAGLGDGHVTVWDMHRA-------- 162 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccch--hhcCCccCCcceeeEecCCC-----ceeccccCCCcEEEEEccCC--------
Confidence 4567888999999999998764321 11223357899999999999 79999999999999999886
Q ss_pred CCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 243 APSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
...+.+.........|.-+.+..++ ..++++..-|. +|++.
T Consensus 163 -----k~l~~i~e~~ap~t~vi~v~~t~~n-------S~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 163 -----KILKVITEHGAPVTGVIFVGRTSQN-------SKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred -----cceeeeeecCCccceEEEEEEeCCC-------cEEEEccCCCc--eEEEE
Confidence 4455544332223334444444444 56777777775 67654
No 364
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.46 E-value=0.037 Score=48.75 Aligned_cols=177 Identities=11% Similarity=0.044 Sum_probs=92.1
Q ss_pred ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe------CCCeEEEEEeccCCCCccceeeeEEeeccCCce
Q 037555 82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS------RDRQFSVFAIQRTGTGEIDYQLIARQEAHKRII 155 (298)
Q Consensus 82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v 155 (298)
+|.+.-.+-..-.++.-..+....+...+++|+|+.++..- .|..-.+|-..... .. ..+.. ....
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg------~~-~~lt~-g~~~ 399 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG------VA-VQVLE-GHSL 399 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC------cc-eeeec-CCCC
Confidence 45554443222222222223334678899999999876655 24444455443221 11 11111 1237
Q ss_pred EEEEEccCCCEEEEeeCC-CeEEEE-----------EccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecC
Q 037555 156 WSCSWNPFGHEFATGSRD-KTVKIW-----------AVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMES 223 (298)
Q Consensus 156 ~~~~~~~~~~~l~~~~~d-g~i~~w-----------d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~d 223 (298)
..-.|+|++..+++.... ..+++. +++.+.... .....|..+.|+|++ ..++... +
T Consensus 400 t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~------~~~g~Issl~wSpDG-----~RiA~i~-~ 467 (591)
T PRK13616 400 TRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS------RVPGPISELQLSRDG-----VRAAMII-G 467 (591)
T ss_pred CCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh------ccCCCcCeEEECCCC-----CEEEEEE-C
Confidence 788999998877776533 122222 332222111 234579999999999 5565544 4
Q ss_pred CcEEEEEeee---cccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 224 GVIELWSISV---NRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 224 g~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+.|++--+.. +.... .....+. ..-...+.++.|..++ .+ +.+..++...+|.++
T Consensus 468 g~v~Va~Vvr~~~G~~~l---------~~~~~l~--~~l~~~~~~l~W~~~~-------~L-~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 468 GKVYLAVVEQTEDGQYAL---------TNPREVG--PGLGDTAVSLDWRTGD-------SL-VVGRSDPEHPVWYVN 525 (591)
T ss_pred CEEEEEEEEeCCCCceee---------cccEEee--cccCCccccceEecCC-------EE-EEEecCCCCceEEEe
Confidence 7777743322 21000 0011111 1223346789999998 54 455555555666654
No 365
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.41 E-value=0.043 Score=43.79 Aligned_cols=158 Identities=17% Similarity=0.178 Sum_probs=78.6
Q ss_pred cccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEE
Q 037555 101 SHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWA 180 (298)
Q Consensus 101 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd 180 (298)
.-...+..+.-+++|++++++.....+.-|+.-... ..+.. ......|..|.|.|++.+.+.+ ..|.|+.=+
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-----w~~~~--r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-----WQPHN--RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSD 213 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS------EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc-----ceEEc--cCccceehhceecCCCCEEEEe-CCcEEEEcc
Confidence 345678888889999988888777777777754321 22222 2345789999999998776654 788888876
Q ss_pred cc-CCcceee-eeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCc
Q 037555 181 VE-NKSSVKQ-ILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFAC 258 (298)
Q Consensus 181 ~~-~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (298)
.. ..+.... +..+......+..++|.+.. ...++|+ .|.+ +.....+ +..........
T Consensus 214 ~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~-----~~wa~gg-~G~l-~~S~DgG-------------ktW~~~~~~~~ 273 (302)
T PF14870_consen 214 DPDDGETWSEPIIPIKTNGYGILDLAYRPPN-----EIWAVGG-SGTL-LVSTDGG-------------KTWQKDRVGEN 273 (302)
T ss_dssp -TTEEEEE---B-TTSS--S-EEEEEESSSS------EEEEES-TT-E-EEESSTT-------------SS-EE-GGGTT
T ss_pred CCCCccccccccCCcccCceeeEEEEecCCC-----CEEEEeC-CccE-EEeCCCC-------------ccceECccccC
Confidence 22 2221110 11122233447889999876 5555554 5544 2333333 22222211223
Q ss_pred ccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEe
Q 037555 259 HVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVF 294 (298)
Q Consensus 259 ~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 294 (298)
-...+..|.|.+.. .-...+.+|.|--|
T Consensus 274 ~~~n~~~i~f~~~~--------~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 274 VPSNLYRIVFVNPD--------KGFVLGQDGVLLRY 301 (302)
T ss_dssp SSS---EEEEEETT--------EEEEE-STTEEEEE
T ss_pred CCCceEEEEEcCCC--------ceEEECCCcEEEEe
Confidence 45678889998765 44445667876544
No 366
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.36 E-value=0.064 Score=44.46 Aligned_cols=211 Identities=10% Similarity=0.131 Sum_probs=93.0
Q ss_pred CceEEEEEc-----------CCCCEEEeEeccCCCCceEEEEEEcCCc----eeeecccc---cc----ccEEEEEEcCC
Q 037555 57 NELFSLCCD-----------HQGKLVASSCKAQSTAAAEIWLWEVGSW----KAMGRLQS---HS----LTVTQIRFSHD 114 (298)
Q Consensus 57 ~~v~~~~~s-----------~~~~~l~~~~~~~~~~d~~i~vw~~~~~----~~~~~~~~---~~----~~v~~~~~~~~ 114 (298)
++....-|+ .+.++|+..+. .++.|+|.|+.+. +..+++.. +. ..-..+..-|+
T Consensus 65 DElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL----~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~ 140 (461)
T PF05694_consen 65 DELHHSGWNACSSCHYGDPSKERRYLILPGL----RSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPD 140 (461)
T ss_dssp --B---EES--GGSTT--TT--S-EEEEEBT----TT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS
T ss_pred CccccccCcccccccCCCCcccCCcEEeeee----ccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCC
Confidence 456666665 24567777764 5789999998742 33333321 11 22334455678
Q ss_pred CCEEEEEeC------CCeEEEEEeccCCCCccceeeeEEeecc---CCceEEEEEccCCCEEEEeeC-------------
Q 037555 115 DNLLLSVSR------DRQFSVFAIQRTGTGEIDYQLIARQEAH---KRIIWSCSWNPFGHEFATGSR------------- 172 (298)
Q Consensus 115 ~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~------------- 172 (298)
|+.++++-. -|-+.++|-++ .......... ...-..+.|.|..+.+++...
T Consensus 141 G~imIS~lGd~~G~g~Ggf~llD~~t-------f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~ 213 (461)
T PF05694_consen 141 GRIMISALGDADGNGPGGFVLLDGET-------FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPE 213 (461)
T ss_dssp --EEEEEEEETTS-S--EEEEE-TTT---------EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TT
T ss_pred ccEEEEeccCCCCCCCCcEEEEcCcc-------ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChh
Confidence 988888532 24566777664 3444444332 223467788888888887643
Q ss_pred -------CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEe-eecccccccCCCC
Q 037555 173 -------DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSI-SVNRTNDVSTPAP 244 (298)
Q Consensus 173 -------dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~-~~~~~~~~~~~~~ 244 (298)
..++.+||+.+.+.++.+ .+......+..+.|..+-. .. .-++.+...++|..|-- ..+.-..
T Consensus 214 d~~~~~yG~~l~vWD~~~r~~~Q~i-dLg~~g~~pLEvRflH~P~-~~-~gFvg~aLss~i~~~~k~~~g~W~a------ 284 (461)
T PF05694_consen 214 DLEAGKYGHSLHVWDWSTRKLLQTI-DLGEEGQMPLEVRFLHDPD-AN-YGFVGCALSSSIWRFYKDDDGEWAA------ 284 (461)
T ss_dssp THHHH-S--EEEEEETTTTEEEEEE-ES-TTEEEEEEEEE-SSTT----EEEEEEE--EEEEEEEE-ETTEEEE------
T ss_pred HhhcccccCeEEEEECCCCcEeeEE-ecCCCCCceEEEEecCCCC-cc-ceEEEEeccceEEEEEEcCCCCeee------
Confidence 357999999999888755 3332223456777766431 11 22222234445555433 3221110
Q ss_pred CCcceeeee--------------ccCCcccceEEEEEeecCCCCCCCcceEEE-eeeCCCcEEEeEec
Q 037555 245 STANIIIRF--------------DPFACHVAAVNRMAWKTHEKPKNSRTMQLA-SCGADNTVRVFQVN 297 (298)
Q Consensus 245 ~~~~~~~~~--------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~-s~~~d~~i~iw~~~ 297 (298)
+.+..+ ..+..-..-|++|..|.|. ++|. ++=.+|.||.||++
T Consensus 285 ---~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD-------rfLYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 285 ---EKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD-------RFLYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp ---EEEEEE--EE--SS---GGGGGG-EE------EEE-TTS--------EEEEEETTTTEEEEEE-S
T ss_pred ---eEEEECCCcccCcccccccccccccCCCceEeEEEccCC-------CEEEEEcccCCcEEEEecC
Confidence 111111 1112224568999999998 5554 55579999999985
No 367
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=97.32 E-value=0.036 Score=48.56 Aligned_cols=124 Identities=13% Similarity=0.127 Sum_probs=72.3
Q ss_pred CceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEee
Q 037555 153 RIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSIS 232 (298)
Q Consensus 153 ~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~ 232 (298)
....-+.-+.-+..-++-+....+.|||.+.+..... ..+ .....|..+.|.... +++.+++.+-.+.|.+|.-.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~-~~f-~~~~~I~dLDWtst~---d~qsiLaVGf~~~v~l~~Q~ 104 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYE-ESF-SEDDPIRDLDWTSTP---DGQSILAVGFPHHVLLYTQL 104 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEe-eee-cCCCceeeceeeecC---CCCEEEEEEcCcEEEEEEcc
Confidence 3444444444343333333445699999998764331 133 357889999998643 23566666667888888542
Q ss_pred ecccccccCCCCCCcceeeeeccCCccc-ceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555 233 VNRTNDVSTPAPSTANIIIRFDPFACHV-AAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ 295 (298)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~ 295 (298)
. ..+......+..+..+. ...|+ .+|.+..|.++| .+++.+| +.+.|++
T Consensus 105 R----~dy~~~~p~w~~i~~i~-i~~~T~h~Igds~Wl~~G-------~LvV~sG--Nqlfv~d 154 (631)
T PF12234_consen 105 R----YDYTNKGPSWAPIRKID-ISSHTPHPIGDSIWLKDG-------TLVVGSG--NQLFVFD 154 (631)
T ss_pred c----hhhhcCCcccceeEEEE-eecCCCCCccceeEecCC-------eEEEEeC--CEEEEEC
Confidence 1 11122223345555554 23344 689999999999 5555443 4566665
No 368
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.32 E-value=0.051 Score=42.49 Aligned_cols=154 Identities=15% Similarity=0.109 Sum_probs=87.3
Q ss_pred cEEEEEEcCCCCEEEEEe---CCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEE-
Q 037555 105 TVTQIRFSHDDNLLLSVS---RDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWA- 180 (298)
Q Consensus 105 ~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd- 180 (298)
.+.+.+++++++.++... ....+.++..... ....+ ....+....|++++...+....+...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--------~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--------VRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRD 94 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--------ceeec--cCCccccccccCCCCEEEEEcCCCceEEEEe
Confidence 688999999999776655 3344555543321 11111 223677888999988777777666667664
Q ss_pred ccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee---cCCcEEEEEeeecccccccCCCCCCcceeeeeccCC
Q 037555 181 VENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM---ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFA 257 (298)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (298)
...+...............|..+.++|++ ..++.-. .++.|.+--+.....-.. ......+....
T Consensus 95 ~~~g~~~~~~v~~~~~~~~I~~l~vSpDG-----~RvA~v~~~~~~~~v~va~V~r~~~g~~-------~~l~~~~~~~~ 162 (253)
T PF10647_consen 95 SASGTGEPVEVDWPGLRGRITALRVSPDG-----TRVAVVVEDGGGGRVYVAGVVRDGDGVP-------RRLTGPRRVAP 162 (253)
T ss_pred cCCCcceeEEecccccCCceEEEEECCCC-----cEEEEEEecCCCCeEEEEEEEeCCCCCc-------ceeccceEecc
Confidence 23332221111222222389999999999 4444433 357777776653311100 01111111112
Q ss_pred cccceEEEEEeecCCCCCCCcceEEEeeeC
Q 037555 258 CHVAAVNRMAWKTHEKPKNSRTMQLASCGA 287 (298)
Q Consensus 258 ~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~ 287 (298)
.....+.++.|.++. .+++.+..
T Consensus 163 ~~~~~v~~v~W~~~~-------~L~V~~~~ 185 (253)
T PF10647_consen 163 PLLSDVTDVAWSDDS-------TLVVLGRS 185 (253)
T ss_pred cccCcceeeeecCCC-------EEEEEeCC
Confidence 235688999999998 56555543
No 369
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.29 E-value=0.06 Score=45.25 Aligned_cols=139 Identities=7% Similarity=-0.046 Sum_probs=74.5
Q ss_pred CceEEEEEEcCCceeeeccccccccEE-EEEEcC--CCCEEEEEeCCCeEEEEEeccCCCCccceeeeE-Eee-ccC-Cc
Q 037555 81 AAAEIWLWEVGSWKAMGRLQSHSLTVT-QIRFSH--DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIA-RQE-AHK-RI 154 (298)
Q Consensus 81 ~d~~i~vw~~~~~~~~~~~~~~~~~v~-~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~-~~~-~~ 154 (298)
.++.|..+|..+|+.+-.+......+. ...-+| .+..++.++.+|.+..+|..++... +.... ... .+. ..
T Consensus 168 ~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~---W~~~~~~~~~~~~~~~ 244 (394)
T PRK11138 168 SNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLI---WQQRISQPTGATEIDR 244 (394)
T ss_pred CCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhh---heeccccCCCccchhc
Confidence 377888888888887655442111000 000112 1235666777888888887664311 11000 000 000 00
Q ss_pred eEEEEEcc--CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEee
Q 037555 155 IWSCSWNP--FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSIS 232 (298)
Q Consensus 155 v~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~ 232 (298)
...+.-+| .+..++.++.+|.+..+|..+++.+... .+ .. ...+.. .+ ..++.++.+|.+..+|..
T Consensus 245 ~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~-~~---~~-~~~~~~--~~-----~~vy~~~~~g~l~ald~~ 312 (394)
T PRK11138 245 LVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR-EY---GS-VNDFAV--DG-----GRIYLVDQNDRVYALDTR 312 (394)
T ss_pred ccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee-cC---CC-ccCcEE--EC-----CEEEEEcCCCeEEEEECC
Confidence 11111122 3557777888999999999998765522 11 11 112222 22 467778889999999988
Q ss_pred ec
Q 037555 233 VN 234 (298)
Q Consensus 233 ~~ 234 (298)
++
T Consensus 313 tG 314 (394)
T PRK11138 313 GG 314 (394)
T ss_pred CC
Confidence 76
No 370
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.0022 Score=57.89 Aligned_cols=106 Identities=15% Similarity=0.247 Sum_probs=74.5
Q ss_pred CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeec
Q 037555 114 DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILAL 193 (298)
Q Consensus 114 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 193 (298)
.+-.++.|+..|.+-..|+... ..+...-....++|++++|+.+|..++.|-.+|.|.+||+..++... .+
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n------L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~---~i 168 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN------LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILK---VI 168 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc------cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCccee---ee
Confidence 4557889999999998888742 11122223346799999999999999999999999999999988877 44
Q ss_pred CCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEee
Q 037555 194 PPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSIS 232 (298)
Q Consensus 194 ~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~ 232 (298)
..+..+.+++-+.... .++..++++...|. +|.+.
T Consensus 169 ~e~~ap~t~vi~v~~t--~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 169 TEHGAPVTGVIFVGRT--SQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eecCCccceEEEEEEe--CCCcEEEEccCCCc--eEEEE
Confidence 4455555555444322 11147888877776 56554
No 371
>PHA02713 hypothetical protein; Provisional
Probab=97.18 E-value=0.047 Score=48.03 Aligned_cols=67 Identities=3% Similarity=0.086 Sum_probs=35.6
Q ss_pred CCCEEEeEeccC-CCCceEEEEEEcCCceee--eccccccccEEEEEEcCCCCEEEEEeCCC-----eEEEEEeccC
Q 037555 67 QGKLVASSCKAQ-STAAAEIWLWEVGSWKAM--GRLQSHSLTVTQIRFSHDDNLLLSVSRDR-----QFSVFAIQRT 135 (298)
Q Consensus 67 ~~~~l~~~~~~~-~~~d~~i~vw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~ 135 (298)
++..++.||.+. ...-..+..||..+..-. ..+.........+. -++++.+.||.++ .+..||..+.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~--~~g~IYviGG~~~~~~~~sve~Ydp~~~ 377 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV--IDDTIYAIGGQNGTNVERTIECYTMGDD 377 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE--ECCEEEEECCcCCCCCCceEEEEECCCC
Confidence 566777776421 111246788888765432 22221111122222 2677778887754 4778887753
No 372
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.05 E-value=0.11 Score=41.24 Aligned_cols=153 Identities=14% Similarity=0.193 Sum_probs=87.5
Q ss_pred CCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeee
Q 037555 66 HQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLI 145 (298)
Q Consensus 66 ~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 145 (298)
..++.|+.|. ++| |.+++.........+. +...|..+...|+-+.+++-+ |+.+.++++..-..........
T Consensus 5 ~~~~~L~vGt-----~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGT-----EDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEE-----CCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccc
Confidence 3577888883 477 8999983222222222 233499999999887777765 5999999988643322100000
Q ss_pred -------EEeeccCCceEEEE--EccCCCEEEEeeCCCeEEEEEccCCcc-e-eeeeecCCCCCceEEEEEeeccccCCc
Q 037555 146 -------ARQEAHKRIIWSCS--WNPFGHEFATGSRDKTVKIWAVENKSS-V-KQILALPPFNSSVTALSWVGLDRQKNH 214 (298)
Q Consensus 146 -------~~~~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~~wd~~~~~~-~-~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (298)
.........+...+ -...+...+......+|.+|....... . ..+..+. ....+.+++|.+
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~------- 148 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLG------- 148 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeC-------
Confidence 00111222344444 112333444444456899888876421 1 2222343 457889999995
Q ss_pred cEEEEeecCCcEEEEEeeecc
Q 037555 215 GFLAVGMESGVIELWSISVNR 235 (298)
Q Consensus 215 ~~l~~g~~dg~i~vwd~~~~~ 235 (298)
..++.|..+ ...+.|+.++.
T Consensus 149 ~~i~v~~~~-~f~~idl~~~~ 168 (275)
T PF00780_consen 149 NKICVGTSK-GFYLIDLNTGS 168 (275)
T ss_pred CEEEEEeCC-ceEEEecCCCC
Confidence 467777644 47888888553
No 373
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.02 E-value=0.075 Score=41.27 Aligned_cols=103 Identities=14% Similarity=0.080 Sum_probs=67.5
Q ss_pred eEEEEEcCCCCE-EEeEeccCCCCceEEEEEEcCCceeeeccccccc--cEEEEEEcCCCCEEEEEeCC-----CeEEEE
Q 037555 59 LFSLCCDHQGKL-VASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSL--TVTQIRFSHDDNLLLSVSRD-----RQFSVF 130 (298)
Q Consensus 59 v~~~~~s~~~~~-l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d-----g~i~iw 130 (298)
-..++|+|..+. ++.+-. ......++|.+..+...++...+. .--.=.|+|||.+|...-.| |.|-||
T Consensus 70 ~Hgi~~~p~~~ravafARr----PGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvY 145 (366)
T COG3490 70 GHGIAFHPALPRAVAFARR----PGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVY 145 (366)
T ss_pred cCCeecCCCCcceEEEEec----CCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEE
Confidence 346777775543 333321 233567788877665544332111 11123589999998876543 789999
Q ss_pred EeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee
Q 037555 131 AIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS 171 (298)
Q Consensus 131 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 171 (298)
|.+.. ...+.++..|.-.-..+.|.+||+.++.+.
T Consensus 146 d~r~~------fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 146 DAREG------FQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ecccc------cceecccccCCcCcceeEEecCCcEEEEeC
Confidence 99853 455667777777778899999999988765
No 374
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.01 E-value=0.0032 Score=34.56 Aligned_cols=34 Identities=15% Similarity=0.335 Sum_probs=28.9
Q ss_pred CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee
Q 037555 56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA 95 (298)
Q Consensus 56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~ 95 (298)
...|.+++|+|...+||.+ ..+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~-----t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALG-----TEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEE-----ECCCeEEEEEC-CCcC
Confidence 4569999999999999999 56999999998 4544
No 375
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.00 E-value=0.081 Score=42.51 Aligned_cols=145 Identities=12% Similarity=0.123 Sum_probs=88.0
Q ss_pred CceEEEEEcCCCCEEEeEec----cC--CCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC-CCeEEE
Q 037555 57 NELFSLCCDHQGKLVASSCK----AQ--STAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR-DRQFSV 129 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~----~~--~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i 129 (298)
...+.+...|+|.+-++... +. ...-|.|+.++. .+..+..+..+-..-+.++|+||++.|..+.. .+.|.-
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r 189 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHR 189 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEE
Confidence 34567778888887666533 01 112344555554 45666666666666789999999987777654 578888
Q ss_pred EEeccCCCCccce-eeeEEeeccCCceEEEEEccCCCEEEEeeCCC-eEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555 130 FAIQRTGTGEIDY-QLIARQEAHKRIIWSCSWNPFGHEFATGSRDK-TVKIWAVENKSSVKQILALPPFNSSVTALSWVG 207 (298)
Q Consensus 130 wd~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (298)
|++.... ..... ..........+..-.++...+|++.+++-.+| .|.+|+.. ++.+..+ .++ ...+++++|-.
T Consensus 190 ~~~d~~~-g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i-~lP--~~~~t~~~FgG 264 (307)
T COG3386 190 YDLDPAT-GPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEI-KLP--VKRPTNPAFGG 264 (307)
T ss_pred EecCccc-CccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEE-ECC--CCCCccceEeC
Confidence 8876311 11111 11222222345556677888888886555554 89999988 6766633 222 25677777765
No 376
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.99 E-value=0.13 Score=41.32 Aligned_cols=132 Identities=11% Similarity=0.115 Sum_probs=83.5
Q ss_pred eEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe----------CCCeEEEEEeccCCCCccceeeeEEeeccC
Q 037555 83 AEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS----------RDRQFSVFAIQRTGTGEIDYQLIARQEAHK 152 (298)
Q Consensus 83 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 152 (298)
++++|+|.++++.+..+.. +....+..+|+++.+++++ ..-.|.+||..+ ..+...+.-..
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~T-------L~~~~EI~iP~ 87 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQT-------LSPTGEIEIPP 87 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTT-------TEEEEEEEETT
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCc-------CcccceEecCC
Confidence 5799999999998877763 2334467899999888753 334689999887 33333222111
Q ss_pred -------CceEEEEEccCCCEEEEee--CCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecC
Q 037555 153 -------RIIWSCSWNPFGHEFATGS--RDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMES 223 (298)
Q Consensus 153 -------~~v~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~d 223 (298)
.....+.++.+++++++.. -...|.|.|+...+...++ ..++ |.-.-|.+. .-+.+-|.|
T Consensus 88 k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei-~~PG------C~~iyP~~~----~~F~~lC~D 156 (342)
T PF06433_consen 88 KPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEI-DTPG------CWLIYPSGN----RGFSMLCGD 156 (342)
T ss_dssp S-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEE-EGTS------EEEEEEEET----TEEEEEETT
T ss_pred cchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeee-cCCC------EEEEEecCC----CceEEEecC
Confidence 1123456777888776653 3456888898888776644 2221 333345442 457788889
Q ss_pred CcEEEEEeeec
Q 037555 224 GVIELWSISVN 234 (298)
Q Consensus 224 g~i~vwd~~~~ 234 (298)
|.+.-..+...
T Consensus 157 Gsl~~v~Ld~~ 167 (342)
T PF06433_consen 157 GSLLTVTLDAD 167 (342)
T ss_dssp SCEEEEEETST
T ss_pred CceEEEEECCC
Confidence 99999988743
No 377
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.99 E-value=0.15 Score=45.35 Aligned_cols=124 Identities=12% Similarity=0.125 Sum_probs=78.4
Q ss_pred ceEEEEEcc--CCCEEEEeeCCCeEEEEEccC-------C----c------ceeeeeecCCCCCceEEEEEe--eccccC
Q 037555 154 IIWSCSWNP--FGHEFATGSRDKTVKIWAVEN-------K----S------SVKQILALPPFNSSVTALSWV--GLDRQK 212 (298)
Q Consensus 154 ~v~~~~~~~--~~~~l~~~~~dg~i~~wd~~~-------~----~------~~~~~~~~~~~~~~v~~~~~~--~~~~~~ 212 (298)
.|+.|.... ....|+.+.+||.|.+|.++. . . .+.+...+. .....++++++ ...
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~--- 177 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKS--- 177 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcc---
Confidence 455555544 446899999999999997642 0 0 001111222 34578899998 555
Q ss_pred CccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEE
Q 037555 213 NHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVR 292 (298)
Q Consensus 213 ~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 292 (298)
.+||+++....|.||-+....... .... -..|...|-+|+|-++.....+. .+|++++-.|.+.
T Consensus 178 --rlIAVSsNs~~VTVFaf~l~~~r~----------~~~~---s~~~~hNIP~VSFl~~~~d~~G~-v~v~a~dI~G~v~ 241 (717)
T PF08728_consen 178 --RLIAVSSNSQEVTVFAFALVDERF----------YHVP---SHQHSHNIPNVSFLDDDLDPNGH-VKVVATDISGEVW 241 (717)
T ss_pred --eEEEEecCCceEEEEEEecccccc----------cccc---ccccccCCCeeEeecCCCCCccc-eEEEEEeccCcEE
Confidence 688888888888888776531110 0000 11267789999998876211111 3788899999999
Q ss_pred EeEec
Q 037555 293 VFQVN 297 (298)
Q Consensus 293 iw~~~ 297 (298)
+|++.
T Consensus 242 ~~~I~ 246 (717)
T PF08728_consen 242 TFKIK 246 (717)
T ss_pred EEEEE
Confidence 98873
No 378
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.97 E-value=0.0043 Score=34.04 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=28.8
Q ss_pred cCCceEEEEEccCCCEEEEeeCCCeEEEEEcc
Q 037555 151 HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVE 182 (298)
Q Consensus 151 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~ 182 (298)
....|..++|+|...+||.++.+|.|.++.+.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 34569999999999999999999999999983
No 379
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.96 E-value=0.19 Score=42.43 Aligned_cols=154 Identities=9% Similarity=0.028 Sum_probs=78.2
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeec-------cccccccEEEEEEcCCCCEEEEEeCCCeEEE
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR-------LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSV 129 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~-------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 129 (298)
+.|.++.|+.+..+++.. .||.+++||+. |+.... .......+....+..+|-.++ ..++.+.+
T Consensus 81 ~~iv~~~wt~~e~LvvV~------~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~ 151 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQ------SDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYV 151 (410)
T ss_pred CCEEEEEECCCCeEEEEE------cCCEEEEEeCC-CceeechhhhccccCcccccccccccCCCCEEEE--CCCCeEEE
Confidence 788899998876666665 48999999986 333111 111112222233333553333 33444433
Q ss_pred EEeccCCCCccceeeeEEe-------eccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEE
Q 037555 130 FAIQRTGTGEIDYQLIARQ-------EAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTA 202 (298)
Q Consensus 130 wd~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~ 202 (298)
.. ....... .+..... ..+........++.+....+....++.+.+.+-...+. +. ..+++..
T Consensus 152 v~--n~~~~~~-~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~------i~-~~~~i~~ 221 (410)
T PF04841_consen 152 VN--NIDEPVK-LRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ------ID-SDGPIIK 221 (410)
T ss_pred Ee--Cccccch-hhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc------cc-CCCCeEE
Confidence 32 2111000 0000000 00111000022344444455555555666444332211 21 3468999
Q ss_pred EEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555 203 LSWVGLDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 203 ~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
|+.+|++ ++++.-..+|.+.+....-.
T Consensus 222 iavSpng-----~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 222 IAVSPNG-----KFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred EEECCCC-----CEEEEEECCCCEEEEECccc
Confidence 9999999 78999889999988865443
No 380
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.95 E-value=0.12 Score=40.06 Aligned_cols=188 Identities=11% Similarity=0.070 Sum_probs=103.9
Q ss_pred eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc-ccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCC
Q 037555 59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS-HSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGT 137 (298)
Q Consensus 59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 137 (298)
.-.+.|..+|.++-+.+. .....|+.+|+.+++......- ..---..++.. ++++..-.=.++...+||..+
T Consensus 47 TQGL~~~~~g~LyESTG~---yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~t--- 119 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGL---YGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNT--- 119 (264)
T ss_dssp EEEEEEEETTEEEEEECS---TTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTT---
T ss_pred CccEEecCCCEEEEeCCC---CCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEcccc---
Confidence 447888778888888776 4567999999999987654331 11122233333 233444444588999999987
Q ss_pred CccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCC---ceEEEEEeeccccCCc
Q 037555 138 GEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNS---SVTALSWVGLDRQKNH 214 (298)
Q Consensus 138 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~ 214 (298)
.+.+..+.. .+.=+.++ .++..|+.......|+++|..+.+....+.. ..... .++-+.|. ++
T Consensus 120 ----l~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V-~~~g~pv~~LNELE~i-~G----- 185 (264)
T PF05096_consen 120 ----LKKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQV-TDNGRPVSNLNELEYI-NG----- 185 (264)
T ss_dssp ----TEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE--EETTEE---EEEEEEE-TT-----
T ss_pred ----ceEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEE-EECCEECCCcEeEEEE-cC-----
Confidence 555666543 34557776 4566777777778899999887766554322 11222 23444454 22
Q ss_pred cEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeec--cC----------CcccceEEEEEeecCCCCCCCcceEE
Q 037555 215 GFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFD--PF----------ACHVAAVNRMAWKTHEKPKNSRTMQL 282 (298)
Q Consensus 215 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~----------~~~~~~v~~~~~~~~~~~~~~~~~~l 282 (298)
.+.+-.-....|...|..++. ....+. .+ .....-.+.|++.|... .++
T Consensus 186 ~IyANVW~td~I~~Idp~tG~-------------V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~------~l~ 246 (264)
T PF05096_consen 186 KIYANVWQTDRIVRIDPETGK-------------VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD------RLF 246 (264)
T ss_dssp EEEEEETTSSEEEEEETTT-B-------------EEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT------EEE
T ss_pred EEEEEeCCCCeEEEEeCCCCe-------------EEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC------EEE
Confidence 333333344455555555552 211110 00 01145688999999873 677
Q ss_pred Eeee
Q 037555 283 ASCG 286 (298)
Q Consensus 283 ~s~~ 286 (298)
+||=
T Consensus 247 vTGK 250 (264)
T PF05096_consen 247 VTGK 250 (264)
T ss_dssp EEET
T ss_pred EEeC
Confidence 7763
No 381
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.90 E-value=0.16 Score=45.16 Aligned_cols=127 Identities=13% Similarity=0.136 Sum_probs=81.1
Q ss_pred cEEEEEEcC--CCCEEEEEeCCCeEEEEEeccCC---------CCc----cceeeeEEeeccCCceEEEEEc--cCCCEE
Q 037555 105 TVTQIRFSH--DDNLLLSVSRDRQFSVFAIQRTG---------TGE----IDYQLIARQEAHKRIIWSCSWN--PFGHEF 167 (298)
Q Consensus 105 ~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~---------~~~----~~~~~~~~~~~~~~~v~~~~~~--~~~~~l 167 (298)
.|+.+.... +...|+.|..||.|.+|..+.-- ... ...++...+. ....+++++++ ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence 355554443 44589999999999999763210 000 0011122222 34578999998 788899
Q ss_pred EEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCcc-EEEEeecCCcEEEEEee
Q 037555 168 ATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHG-FLAVGMESGVIELWSIS 232 (298)
Q Consensus 168 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~l~~g~~dg~i~vwd~~ 232 (298)
|+++....|.||-............-..+...|.+|+|.++..++.+. .+++++-.|.+.+|++.
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 999988888888765432211110111256678999999987544443 77778889999999984
No 382
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.89 E-value=0.24 Score=42.61 Aligned_cols=163 Identities=17% Similarity=0.198 Sum_probs=92.0
Q ss_pred EeccCCCceEEEEEcCCCCEEEeEe-ccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCC----CCEEEEEeCCC
Q 037555 51 KLYGHGNELFSLCCDHQGKLVASSC-KAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHD----DNLLLSVSRDR 125 (298)
Q Consensus 51 ~~~~h~~~v~~~~~s~~~~~l~~~~-~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg 125 (298)
.+...-.+|..++|. ||+.++-.. . -.+|.+++=| .+.+..|. .|..+.|.|- -..+++.-...
T Consensus 14 aL~qAiHPvhGlaWT-DGkqVvLT~L~---l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkk 82 (671)
T PF15390_consen 14 ALHQAIHPVHGLAWT-DGKQVVLTDLQ---LHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKK 82 (671)
T ss_pred HHHhhhccccceEec-CCCEEEEEeee---eeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccc
Confidence 344445688899997 555544441 1 0112222111 12333343 5889999994 23566666678
Q ss_pred eEEEEEeccCCCCccceeeeEEeecc---CCc--eEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCce
Q 037555 126 QFSVFAIQRTGTGEIDYQLIARQEAH---KRI--IWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSV 200 (298)
Q Consensus 126 ~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~--v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v 200 (298)
.|.+|.+....... .+.+.....+ .-+ -..+.|+|....|++-.....-.+++++....... ..+. ..+.|
T Consensus 83 hVtVWqL~~s~~e~--~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVk-aDi~-~~G~I 158 (671)
T PF15390_consen 83 HVTVWQLCPSTTER--NKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVK-ADIK-TSGLI 158 (671)
T ss_pred eEEEEEeccCcccc--ccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEE-Eecc-CCceE
Confidence 99999997543322 1112111111 111 24577999988888777655555666654433221 1343 56889
Q ss_pred EEEEEeeccccCCccEEEEe-ecCCcEEEEEeee
Q 037555 201 TALSWVGLDRQKNHGFLAVG-MESGVIELWSISV 233 (298)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~g-~~dg~i~vwd~~~ 233 (298)
.|.+|.++| ..|+.+ +..=.-++||-..
T Consensus 159 hCACWT~DG-----~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 159 HCACWTKDG-----QRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEEEecCcC-----CEEEEEeCCeEEEEEecCch
Confidence 999999999 445444 3333567887543
No 383
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.87 E-value=0.33 Score=43.91 Aligned_cols=86 Identities=17% Similarity=0.237 Sum_probs=55.6
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCC-CCcc----ceeeeEEe--------eccCCceEEEEEccC---CCE
Q 037555 103 SLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG-TGEI----DYQLIARQ--------EAHKRIIWSCSWNPF---GHE 166 (298)
Q Consensus 103 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~----~~~~~~~~--------~~~~~~v~~~~~~~~---~~~ 166 (298)
...|..+.++|+|.+++..|..|...+.=.+..+ .+.. .....+.. ..+...|..+.|+|. +..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3468899999999999998876654443322211 1100 00011111 123457899999995 589
Q ss_pred EEEeeCCCeEEEEEccCCccee
Q 037555 167 FATGSRDKTVKIWAVENKSSVK 188 (298)
Q Consensus 167 l~~~~~dg~i~~wd~~~~~~~~ 188 (298)
|++-..|+++|+||+.......
T Consensus 164 l~vLtsdn~lR~y~~~~~~~p~ 185 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQHPW 185 (717)
T ss_pred EEEEecCCEEEEEecCCCCCCe
Confidence 9999999999999998654433
No 384
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.81 E-value=0.0079 Score=44.80 Aligned_cols=104 Identities=14% Similarity=0.134 Sum_probs=61.0
Q ss_pred CCEEEeEeccCCCCceEEEEEEcCCce-eeeccccccccEE-EEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeee
Q 037555 68 GKLVASSCKAQSTAAAEIWLWEVGSWK-AMGRLQSHSLTVT-QIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLI 145 (298)
Q Consensus 68 ~~~l~~~~~~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 145 (298)
+..++.| +.+|.|++|+..... ....+......|. .+.-..++.+..+++.||.|+.|+... .+.+
T Consensus 70 ~~~~~vG-----~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p-------~k~~ 137 (238)
T KOG2444|consen 70 SAKLMVG-----TSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP-------NKVL 137 (238)
T ss_pred CceEEee-----cccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeecccc-------Ccee
Confidence 3456667 459999999886221 1111222222222 222233566888999999999999886 4444
Q ss_pred EEeeccC-CceEEEEEccCCCEEEEe--eCCCeEEEEEccC
Q 037555 146 ARQEAHK-RIIWSCSWNPFGHEFATG--SRDKTVKIWAVEN 183 (298)
Q Consensus 146 ~~~~~~~-~~v~~~~~~~~~~~l~~~--~~dg~i~~wd~~~ 183 (298)
.....|. .++.....+..++.++.+ |.|..++.|++..
T Consensus 138 g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 138 GYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 4445555 444444444455556555 5666666666654
No 385
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.79 E-value=0.27 Score=41.70 Aligned_cols=122 Identities=13% Similarity=0.132 Sum_probs=75.2
Q ss_pred ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeec-cccccccEEEEEEcCCCCEEEEEeCCC-----------
Q 037555 58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR-LQSHSLTVTQIRFSHDDNLLLSVSRDR----------- 125 (298)
Q Consensus 58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg----------- 125 (298)
.+..+.++|+|+++|.+-..++++...|+++|+.+++.+.. +.. .....+.|.++++.|+-...+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 34467899999999987655445667899999999977643 221 1123399999988766554332
Q ss_pred eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC---C-CeEEEEEccCC
Q 037555 126 QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR---D-KTVKIWAVENK 184 (298)
Q Consensus 126 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d-g~i~~wd~~~~ 184 (298)
.|+.|.+.+.... -.++............+..++++++++..+. + ..+.+.|+...
T Consensus 203 ~v~~~~~gt~~~~---d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 203 QVYRHKLGTPQSE---DELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEEETTS-GGG----EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEEECCCChHh---CeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 3666666553211 1123222222222567888999998776443 2 35778888764
No 386
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.79 E-value=0.16 Score=39.01 Aligned_cols=123 Identities=7% Similarity=-0.063 Sum_probs=76.9
Q ss_pred CCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEE
Q 037555 68 GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR 147 (298)
Q Consensus 68 ~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 147 (298)
..+++.|+ -.+.+.--|..+|+..-.-. -...+.+-+.- -|++++.|...|.+++.+..++. ....
T Consensus 23 kT~v~igS-----Hs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs-------~~w~ 88 (354)
T KOG4649|consen 23 KTLVVIGS-----HSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGS-------QIWN 88 (354)
T ss_pred ceEEEEec-----CCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchh-------heee
Confidence 45666664 36778888888887654321 12223332222 46789999999999999998843 2322
Q ss_pred eeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555 148 QEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG 207 (298)
Q Consensus 148 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (298)
+..-...-......+++..+..++.|+..+..|.++..++. ..+...+...+-+..|
T Consensus 89 f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVy---kskcgG~~f~sP~i~~ 145 (354)
T KOG4649|consen 89 FVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVY---KSKCGGGTFVSPVIAP 145 (354)
T ss_pred eeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEE---ecccCCceeccceecC
Confidence 22222111233456789999999999999999999887766 4443333333334444
No 387
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.75 E-value=0.19 Score=39.39 Aligned_cols=150 Identities=14% Similarity=0.127 Sum_probs=88.8
Q ss_pred ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEe-ccCC
Q 037555 58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAI-QRTG 136 (298)
Q Consensus 58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~ 136 (298)
.+.+.+++++++.+|..... .....++++.... ....+. ....+..-.|++++...+....+...+++.. ....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~--~~~~~L~~~~~~~--~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEG--DGGRSLYVGPAGG--PVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEc--CCCCEEEEEcCCC--cceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 68899999999988877511 1245666665542 222221 2236788899999887777776666666642 2211
Q ss_pred CCccceeeeEE-eeccCCceEEEEEccCCCEEEEee---CCCeEEEEEccCCcce------eeeeecCCCCCceEEEEEe
Q 037555 137 TGEIDYQLIAR-QEAHKRIIWSCSWNPFGHEFATGS---RDKTVKIWAVENKSSV------KQILALPPFNSSVTALSWV 206 (298)
Q Consensus 137 ~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~~wd~~~~~~~------~~~~~~~~~~~~v~~~~~~ 206 (298)
...... .......|..+.++|||..++... .++.|.+--+.....- ..+.........+..+.|.
T Consensus 100 -----~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 100 -----GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred -----ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence 111111 111112899999999998887766 3467776654321111 1111222234678999999
Q ss_pred eccccCCccEEEEeec
Q 037555 207 GLDRQKNHGFLAVGME 222 (298)
Q Consensus 207 ~~~~~~~~~~l~~g~~ 222 (298)
+++ .+++.+..
T Consensus 175 ~~~-----~L~V~~~~ 185 (253)
T PF10647_consen 175 DDS-----TLVVLGRS 185 (253)
T ss_pred CCC-----EEEEEeCC
Confidence 998 45555543
No 388
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.67 E-value=0.25 Score=39.76 Aligned_cols=193 Identities=6% Similarity=0.018 Sum_probs=103.5
Q ss_pred CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc----c-ccccEEEEEEcCCCCEEEEEeC-------
Q 037555 56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ----S-HSLTVTQIRFSHDDNLLLSVSR------- 123 (298)
Q Consensus 56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~----~-~~~~v~~~~~~~~~~~l~~~~~------- 123 (298)
.+.+.++..-..+..|+++ +.-+.+++.+++..+..+. + -....+.+...|+|.+.++...
T Consensus 65 p~~~~~~~~~d~~g~Lv~~-------~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~ 137 (307)
T COG3386 65 PGGFSSGALIDAGGRLIAC-------EHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKS 137 (307)
T ss_pred CCCcccceeecCCCeEEEE-------ccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCcc
Confidence 3344555544455566666 4557777776555422221 1 1234567888999887665443
Q ss_pred --CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-CCeEEEEEccC--Ccce--eeeeecCCC
Q 037555 124 --DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-DKTVKIWAVEN--KSSV--KQILALPPF 196 (298)
Q Consensus 124 --dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~--~~~~--~~~~~~~~~ 196 (298)
...=.+|.+... ....+.+..+-..-+.|+|+|+++.|+.+.. .+.|.-|++.. .... .....+...
T Consensus 138 ~~~~~G~lyr~~p~------g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~ 211 (307)
T COG3386 138 EERPTGSLYRVDPD------GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEE 211 (307)
T ss_pred ccCCcceEEEEcCC------CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCC
Confidence 011134444421 2233333443445578999999988877765 47788887763 1111 101122223
Q ss_pred CCceEEEEEeeccccCCccEEEEeecCC-cEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCC
Q 037555 197 NSSVTALSWVGLDRQKNHGFLAVGMESG-VIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPK 275 (298)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~l~~g~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 275 (298)
.+..-.++...++ .+.+++...| .|.+|+.. + +.+..+. .....+++++|--..
T Consensus 212 ~G~PDG~~vDadG-----~lw~~a~~~g~~v~~~~pd-G-------------~l~~~i~---lP~~~~t~~~FgG~~--- 266 (307)
T COG3386 212 PGLPDGMAVDADG-----NLWVAAVWGGGRVVRFNPD-G-------------KLLGEIK---LPVKRPTNPAFGGPD--- 266 (307)
T ss_pred CCCCCceEEeCCC-----CEEEecccCCceEEEECCC-C-------------cEEEEEE---CCCCCCccceEeCCC---
Confidence 3444455666655 4554444443 88888887 4 3444332 233667778886431
Q ss_pred CCcceEEEeeeCC
Q 037555 276 NSRTMQLASCGAD 288 (298)
Q Consensus 276 ~~~~~~l~s~~~d 288 (298)
...+++|+...
T Consensus 267 --~~~L~iTs~~~ 277 (307)
T COG3386 267 --LNTLYITSARS 277 (307)
T ss_pred --cCEEEEEecCC
Confidence 01566666554
No 389
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.66 E-value=0.25 Score=39.59 Aligned_cols=159 Identities=18% Similarity=0.217 Sum_probs=80.6
Q ss_pred cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQ 133 (298)
Q Consensus 54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 133 (298)
+-.+.+..+.-+++|+++++++. .....-|+.....-...-+.-...|..+.|.|++.+.+.+ ..|.|++=+..
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~-----G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~ 215 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSR-----GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDP 215 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETT-----SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-T
T ss_pred CCcceeEeEEECCCCcEEEEECc-----ccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCC
Confidence 44577889999999999999843 4445567754211111112245789999999998776644 88888887722
Q ss_pred cCCCCccceee-eEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccC
Q 037555 134 RTGTGEIDYQL-IARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQK 212 (298)
Q Consensus 134 ~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 212 (298)
... .. ... +.......-.+..++|.+++...++|+. |. .+...+.++...............+.+.|.+..
T Consensus 216 ~~~--~~-w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~-l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~--- 287 (302)
T PF14870_consen 216 DDG--ET-WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GT-LLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPD--- 287 (302)
T ss_dssp TEE--EE-E---B-TTSS--S-EEEEEESSSS-EEEEEST-T--EEEESSTTSS-EE-GGGTTSSS---EEEEEETT---
T ss_pred CCc--cc-cccccCCcccCceeeEEEEecCCCCEEEEeCC-cc-EEEeCCCCccceECccccCCCCceEEEEEcCCC---
Confidence 110 00 110 1111122334789999988877776664 43 334556666655333333455678899998765
Q ss_pred CccEEEEeecCCcEEEE
Q 037555 213 NHGFLAVGMESGVIELW 229 (298)
Q Consensus 213 ~~~~l~~g~~dg~i~vw 229 (298)
.-++.| .+|.|--|
T Consensus 288 --~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 288 --KGFVLG-QDGVLLRY 301 (302)
T ss_dssp --EEEEE--STTEEEEE
T ss_pred --ceEEEC-CCcEEEEe
Confidence 344444 67776544
No 390
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.65 E-value=0.15 Score=43.82 Aligned_cols=152 Identities=13% Similarity=0.210 Sum_probs=86.7
Q ss_pred cccEEEEEEcCCCCEEE-EEe--CCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCC----CEEEEeeCCCe
Q 037555 103 SLTVTQIRFSHDDNLLL-SVS--RDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG----HEFATGSRDKT 175 (298)
Q Consensus 103 ~~~v~~~~~~~~~~~l~-~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~ 175 (298)
-.++..++|. ||+.++ +.- .+|.+++=| ...+.. -..|..+.|.|-+ ..+++......
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd----------s~viGq----FEhV~GlsW~P~~~~~~paLLAVQHkkh 83 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD----------SKVIGQ----FEHVHGLSWAPPCTADTPALLAVQHKKH 83 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCC----------ccEeec----cceeeeeeecCcccCCCCceEEEeccce
Confidence 3478899998 565443 321 122222211 222333 2448899999843 35666677789
Q ss_pred EEEEEccCC-----cceee-eeec-CCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcc
Q 037555 176 VKIWAVENK-----SSVKQ-ILAL-PPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTAN 248 (298)
Q Consensus 176 i~~wd~~~~-----~~~~~-~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 248 (298)
|.+|.+... +.+.. ...+ ....--.....|+|.. .+|++-.....-.+++++.... .
T Consensus 84 VtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~-----~iL~VLT~~dvSV~~sV~~d~s-----------r 147 (671)
T PF15390_consen 84 VTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKK-----AILTVLTARDVSVLPSVHCDSS-----------R 147 (671)
T ss_pred EEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCC-----ceEEEEecCceeEeeeeeeCCc-----------e
Confidence 999988621 11110 0011 0112224578899987 5666655544445667765421 1
Q ss_pred eeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555 249 IIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ 295 (298)
Q Consensus 249 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~ 295 (298)
....+ ...+.|.+.+|.+||+ +++++.|..=.-+|||
T Consensus 148 VkaDi----~~~G~IhCACWT~DG~------RLVVAvGSsLHSyiWd 184 (671)
T PF15390_consen 148 VKADI----KTSGLIHCACWTKDGQ------RLVVAVGSSLHSYIWD 184 (671)
T ss_pred EEEec----cCCceEEEEEecCcCC------EEEEEeCCeEEEEEec
Confidence 11222 2568899999999994 5566666655667887
No 391
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.53 E-value=0.029 Score=51.40 Aligned_cols=149 Identities=11% Similarity=0.117 Sum_probs=93.0
Q ss_pred EEeccCC-CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceee-----eccc------cccccEEEEEEcCCCC-
Q 037555 50 HKLYGHG-NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAM-----GRLQ------SHSLTVTQIRFSHDDN- 116 (298)
Q Consensus 50 ~~~~~h~-~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~-----~~~~------~~~~~v~~~~~~~~~~- 116 (298)
..+.-|. -+|..+...+|++..++... ..+-.|..||+++-..- .-+. .......++.|.|.-.
T Consensus 93 ~t~~v~k~~pi~~~v~~~D~t~s~v~~t---sng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~ 169 (1405)
T KOG3630|consen 93 LTFKVEKEIPIVIFVCFHDATDSVVVST---SNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPL 169 (1405)
T ss_pred cceeeeccccceEEEeccCCceEEEEEe---cCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccc
Confidence 4444444 35667777788777666544 33558899998753211 1111 1233456788888543
Q ss_pred EEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCC-
Q 037555 117 LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPP- 195 (298)
Q Consensus 117 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~- 195 (298)
..+++..|+.|++..+.... ..+.. .......++++|+|.|..++.|...|++.-|-..-. ....+...+-
T Consensus 170 n~av~l~dlsl~V~~~~~~~------~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~ 241 (1405)
T KOG3630|consen 170 NSAVDLSDLSLRVKSTKQLA------QNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVE 241 (1405)
T ss_pred hhhhhccccchhhhhhhhhh------hhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcC
Confidence 45677789999988776421 11111 234566899999999999999999999998865432 1121111111
Q ss_pred CCCceEEEEEeecc
Q 037555 196 FNSSVTALSWVGLD 209 (298)
Q Consensus 196 ~~~~v~~~~~~~~~ 209 (298)
....|.+++|....
T Consensus 242 e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 242 ENYRVLSVTWLSTQ 255 (1405)
T ss_pred CCcceeEEEEecce
Confidence 14679999998876
No 392
>PRK10115 protease 2; Provisional
Probab=96.52 E-value=0.61 Score=42.33 Aligned_cols=119 Identities=12% Similarity=0.050 Sum_probs=70.4
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCC------CeEEEE
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD------RQFSVF 130 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iw 130 (298)
-.+..+.++|+|++|+.+....+++...|++.|+.+++.+...-.... ..++|.+|++.|+-...+ ..|..+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 347788999999999988655556667899999988864322211221 469999998866555432 356666
Q ss_pred EeccCCCCccceeeeEEeeccCCceE-EEEEccCCCEEEEeeC---CCeEEEEEcc
Q 037555 131 AIQRTGTGEIDYQLIARQEAHKRIIW-SCSWNPFGHEFATGSR---DKTVKIWAVE 182 (298)
Q Consensus 131 d~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~---dg~i~~wd~~ 182 (298)
++.+.... ..++.. ....... .+..+.++++++..+. ++.+.+++..
T Consensus 205 ~lgt~~~~---d~lv~~--e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 205 TIGTPASQ---DELVYE--EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred ECCCChhH---CeEEEe--eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 66654211 122222 2222222 3333447776655443 4568888853
No 393
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.50 E-value=0.32 Score=42.98 Aligned_cols=157 Identities=13% Similarity=0.089 Sum_probs=80.2
Q ss_pred eEEEEEcCCCCEEEeEecc-CCCCceEEEEEEcCCceeee--ccccccccEEEEEEcCCCCEEEEEeCCCe-----EEEE
Q 037555 59 LFSLCCDHQGKLVASSCKA-QSTAAAEIWLWEVGSWKAMG--RLQSHSLTVTQIRFSHDDNLLLSVSRDRQ-----FSVF 130 (298)
Q Consensus 59 v~~~~~s~~~~~l~~~~~~-~~~~d~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~iw 130 (298)
-.+++.. ++...++||.+ +...-..+..||..+.+-.. .+...........+ +|.+.++|+.||. +-.|
T Consensus 325 ~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~Y 401 (571)
T KOG4441|consen 325 RVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECY 401 (571)
T ss_pred cccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEe
Confidence 3344443 45778888775 33344678889987665332 22222222222222 7888899999865 5566
Q ss_pred EeccCCCCccceeeeEEeeccCCceEEEEEc-cCCCEEEEeeCCC------eEEEEEccCCcceeeeeecCCCCCceEEE
Q 037555 131 AIQRTGTGEIDYQLIARQEAHKRIIWSCSWN-PFGHEFATGSRDK------TVKIWAVENKSSVKQILALPPFNSSVTAL 203 (298)
Q Consensus 131 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg------~i~~wd~~~~~~~~~~~~~~~~~~~v~~~ 203 (298)
|..+.. +..+..... ........ -++...++|+.++ ++..||..+..-.. +......... ..+
T Consensus 402 Dp~~~~-----W~~va~m~~---~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~-~~~M~~~R~~-~g~ 471 (571)
T KOG4441|consen 402 DPVTNK-----WTPVAPMLT---RRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTL-IAPMNTRRSG-FGV 471 (571)
T ss_pred cCCCCc-----ccccCCCCc---ceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceee-cCCccccccc-ceE
Confidence 665533 333332222 12222222 2567777777554 46788887755322 1112111111 123
Q ss_pred EEeeccccCCccEEEEeecCC-----cEEEEEeeec
Q 037555 204 SWVGLDRQKNHGFLAVGMESG-----VIELWSISVN 234 (298)
Q Consensus 204 ~~~~~~~~~~~~~l~~g~~dg-----~i~vwd~~~~ 234 (298)
+... + .+.+.|+.|+ +|..||..+.
T Consensus 472 a~~~-~-----~iYvvGG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 472 AVLN-G-----KIYVVGGFDGTSALSSVERYDPETN 501 (571)
T ss_pred EEEC-C-----EEEEECCccCCCccceEEEEcCCCC
Confidence 3322 2 5777777665 2555666553
No 394
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.48 E-value=0.21 Score=44.05 Aligned_cols=128 Identities=13% Similarity=0.187 Sum_probs=79.6
Q ss_pred CCceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeec--cccccccEEEEEEc--CCCCEEEEE
Q 037555 46 WPESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR--LQSHSLTVTQIRFS--HDDNLLLSV 121 (298)
Q Consensus 46 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~--~~~~~l~~~ 121 (298)
|....++...-..+.-+.-+.-++..++- .....+.|||...+..... | ...+.|.++.|. |+++.+++.
T Consensus 19 w~~t~~~~T~i~~~~li~gss~~k~a~V~-----~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaV 92 (631)
T PF12234_consen 19 WLLTSTFETGISNPSLISGSSIKKIAVVD-----SSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAV 92 (631)
T ss_pred EEEEEEEecCCCCcceEeecccCcEEEEE-----CCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEE
Confidence 44444554444555666666545444443 2366899999988764332 3 357789999996 588999999
Q ss_pred eCCCeEEEEEeccCC---CCccceeeeEEe--eccC-CceEEEEEccCCCEEEEeeCCCeEEEEEcc
Q 037555 122 SRDRQFSVFAIQRTG---TGEIDYQLIARQ--EAHK-RIIWSCSWNPFGHEFATGSRDKTVKIWAVE 182 (298)
Q Consensus 122 ~~dg~i~iwd~~~~~---~~~~~~~~~~~~--~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~ 182 (298)
+..+.|.++.-.... ..+ .+..+..+ ..+. .+|.+..|.++|..++.++ +.+.++|-.
T Consensus 93 Gf~~~v~l~~Q~R~dy~~~~p-~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~ 156 (631)
T PF12234_consen 93 GFPHHVLLYTQLRYDYTNKGP-SWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW 156 (631)
T ss_pred EcCcEEEEEEccchhhhcCCc-ccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence 999999998643111 111 12233322 2233 5789999999886655443 567777643
No 395
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.44 E-value=0.26 Score=37.25 Aligned_cols=148 Identities=11% Similarity=0.084 Sum_probs=83.5
Q ss_pred CCceEEEEEcCCCCEEEeEeccCC----CCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEE-EEEeCCCeEEEE
Q 037555 56 GNELFSLCCDHQGKLVASSCKAQS----TAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLL-LSVSRDRQFSVF 130 (298)
Q Consensus 56 ~~~v~~~~~s~~~~~l~~~~~~~~----~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iw 130 (298)
....+.-..+|+|++++-.-.+.+ --.+.++.|-... + +..+...-.--..++|+.+.+.+ ++-+.+-.|.-|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h-~-v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~ 185 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGH-Q-VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY 185 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCC-C-ceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence 344566667899998543321110 0123445554431 1 11111112223568888776655 445667788778
Q ss_pred EeccCCCCccceeeeEEeec----cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEe
Q 037555 131 AIQRTGTGEIDYQLIARQEA----HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWV 206 (298)
Q Consensus 131 d~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~ 206 (298)
|.+.........+.+..++. ....--.++..-+|++++++-..++|...|..+++.+.++ .-....|++++|-
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~ei---klPt~qitsccFg 262 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEI---KLPTPQITSCCFG 262 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEE---EcCCCceEEEEec
Confidence 85443322111222222222 1111234555667888899989999999999999988854 3336779999997
Q ss_pred ec
Q 037555 207 GL 208 (298)
Q Consensus 207 ~~ 208 (298)
..
T Consensus 263 Gk 264 (310)
T KOG4499|consen 263 GK 264 (310)
T ss_pred CC
Confidence 65
No 396
>PHA02713 hypothetical protein; Provisional
Probab=96.42 E-value=0.11 Score=45.88 Aligned_cols=152 Identities=5% Similarity=-0.027 Sum_probs=74.3
Q ss_pred CCCEEEeEeccCCCCceEEEEEEcCCcee--eeccccccccEEEEEEcCCCCEEEEEeCCC-------------------
Q 037555 67 QGKLVASSCKAQSTAAAEIWLWEVGSWKA--MGRLQSHSLTVTQIRFSHDDNLLLSVSRDR------------------- 125 (298)
Q Consensus 67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------------------- 125 (298)
+|++.+.||.++...-..+..||..+.+- +..+.........+.+ ++++.+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccc
Confidence 46677777653222234688899876533 2222211111122222 677777777653
Q ss_pred ----eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC------CeEEEEEccCCcceeeeeecCC
Q 037555 126 ----QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD------KTVKIWAVENKSSVKQILALPP 195 (298)
Q Consensus 126 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~ 195 (298)
.+..||..+.. +..+.......... +++. -++...+.|+.+ ..+..||..+......+..++.
T Consensus 429 ~~~~~ve~YDP~td~-----W~~v~~m~~~r~~~-~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~ 501 (557)
T PHA02713 429 HSSNKVIRYDTVNNI-----WETLPNFWTGTIRP-GVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTES 501 (557)
T ss_pred cccceEEEECCCCCe-----EeecCCCCcccccC-cEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCc
Confidence 35667766532 33332222111111 1222 246666667654 2367888886222222223332
Q ss_pred CCCceEEEEEeeccccCCccEEEEeecCC--cEEEEEeeec
Q 037555 196 FNSSVTALSWVGLDRQKNHGFLAVGMESG--VIELWSISVN 234 (298)
Q Consensus 196 ~~~~v~~~~~~~~~~~~~~~~l~~g~~dg--~i~vwd~~~~ 234 (298)
.... .+++.. ++ .+.++|+.++ .+-.||..+.
T Consensus 502 ~r~~-~~~~~~-~~-----~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 502 RLSA-LHTILH-DN-----TIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred cccc-ceeEEE-CC-----EEEEEeeecceeehhhcCcccc
Confidence 2222 223322 23 6788888787 5666666654
No 397
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.42 E-value=0.55 Score=40.76 Aligned_cols=102 Identities=10% Similarity=0.130 Sum_probs=57.1
Q ss_pred CceEEEEEEcCCceeeeccccccc------cEE--EEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccC
Q 037555 81 AAAEIWLWEVGSWKAMGRLQSHSL------TVT--QIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHK 152 (298)
Q Consensus 81 ~d~~i~vw~~~~~~~~~~~~~~~~------~v~--~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 152 (298)
.++.|.-.|..+++.+-.+..... .+. .+... ++..++.++.++.|.-+|.++++ .+-......
T Consensus 69 ~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~-------~~W~~~~~~ 140 (488)
T cd00216 69 SHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGK-------QVWKFGNND 140 (488)
T ss_pred CCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCC-------EeeeecCCC
Confidence 478999999999987765542221 010 11111 22577788889999999988743 222222111
Q ss_pred C--ceEEEEEcc--CCCEEEEee---------CCCeEEEEEccCCcceeee
Q 037555 153 R--IIWSCSWNP--FGHEFATGS---------RDKTVKIWAVENKSSVKQI 190 (298)
Q Consensus 153 ~--~v~~~~~~~--~~~~l~~~~---------~dg~i~~wd~~~~~~~~~~ 190 (298)
. .-..+.-+| .+..++.++ .+|.|..+|..+++..-..
T Consensus 141 ~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 141 QVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRF 191 (488)
T ss_pred CcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEe
Confidence 1 000111111 124455554 3678999999988876643
No 398
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.36 E-value=0.0024 Score=56.62 Aligned_cols=125 Identities=16% Similarity=0.126 Sum_probs=73.2
Q ss_pred CCCceEEEEEcC---CCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEE-----------EEcCCCCEEEE
Q 037555 55 HGNELFSLCCDH---QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQI-----------RFSHDDNLLLS 120 (298)
Q Consensus 55 h~~~v~~~~~s~---~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~-----------~~~~~~~~l~~ 120 (298)
....+.-+.|.| +..++..+ ..++.|++...++... ..+.+|...+..+ ..+|||..++.
T Consensus 179 ~gs~~~~V~wcp~~~~~~~ic~~-----~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~ 252 (1283)
T KOG1916|consen 179 YGSDPQLVSWCPIAVNKVYICYG-----LKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAW 252 (1283)
T ss_pred CCCCcceeeecccccccceeeec-----cCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEE
Confidence 334455555655 45455555 4467777776654322 4455576655443 36899999999
Q ss_pred EeCCCeEEEEEeccCCCCccceeeeEEeeccC-CceEEEEEccCC---------CEEEEeeC-CCeEEEEEccCCcce
Q 037555 121 VSRDRQFSVFAIQRTGTGEIDYQLIARQEAHK-RIIWSCSWNPFG---------HEFATGSR-DKTVKIWAVENKSSV 187 (298)
Q Consensus 121 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~---------~~l~~~~~-dg~i~~wd~~~~~~~ 187 (298)
+..||.+++|.+.-.+... ..+....+.|. .+-.|.-|+.+. .+++++++ +..+++|.....+++
T Consensus 253 a~~dG~v~f~Qiyi~g~~~--~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 253 AISDGSVGFYQIYITGKIV--HRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eecCCccceeeeeeecccc--HhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 9999999999876432211 34455556666 333333343222 23445544 455899987766654
No 399
>PHA03098 kelch-like protein; Provisional
Probab=96.35 E-value=0.66 Score=40.86 Aligned_cols=110 Identities=5% Similarity=-0.038 Sum_probs=53.3
Q ss_pred CCCEEEeEeccCCC-CceEEEEEEcCCceeeec--cccccccEEEEEEcCCCCEEEEEeCC-----CeEEEEEeccCCCC
Q 037555 67 QGKLVASSCKAQST-AAAEIWLWEVGSWKAMGR--LQSHSLTVTQIRFSHDDNLLLSVSRD-----RQFSVFAIQRTGTG 138 (298)
Q Consensus 67 ~~~~l~~~~~~~~~-~d~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~ 138 (298)
++..++.||.+... ....+..||..+.+.... +.........+.+ ++.+++.|+.+ ..+..||..+..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~-- 369 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESK-- 369 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCc--
Confidence 45667777653211 123678888876654321 1111111222222 56777777765 346667766532
Q ss_pred ccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC------CeEEEEEccCCc
Q 037555 139 EIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD------KTVKIWAVENKS 185 (298)
Q Consensus 139 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~wd~~~~~ 185 (298)
+.....+...... .+++. -++..++.|+.+ ..+..||..+.+
T Consensus 370 ---W~~~~~lp~~r~~-~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~ 417 (534)
T PHA03098 370 ---WREEPPLIFPRYN-PCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNK 417 (534)
T ss_pred ---eeeCCCcCcCCcc-ceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence 2222222111111 11222 246666666632 357888987654
No 400
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.28 Score=36.38 Aligned_cols=106 Identities=8% Similarity=0.023 Sum_probs=54.8
Q ss_pred CCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEE-EEEeCCCeEEEEEeccCCCCccceeee
Q 037555 67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLL-LSVSRDRQFSVFAIQRTGTGEIDYQLI 145 (298)
Q Consensus 67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~ 145 (298)
+|.++.+.+. .....|++||+.+++.+.+..-....+..=-...-+..+ .-.=.+|.-..+|.++ .+.+
T Consensus 55 ~g~i~esTG~---yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t-------~~~l 124 (262)
T COG3823 55 DGHILESTGL---YGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADT-------LEEL 124 (262)
T ss_pred CCEEEEeccc---cccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHH-------hhhh
Confidence 4566776655 456789999999888765433111111111111112222 2223467777888776 3334
Q ss_pred EEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCc
Q 037555 146 ARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKS 185 (298)
Q Consensus 146 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 185 (298)
..+. .++.=+.++- ++..|..++...+++.-|.++..
T Consensus 125 g~~~-y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa 161 (262)
T COG3823 125 GRFS-YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFA 161 (262)
T ss_pred cccc-cCCcceeeec--CCcceEeeCCceEEEecCHHHhh
Confidence 3333 2333344443 34445555555566666665533
No 401
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.29 E-value=0.49 Score=38.77 Aligned_cols=108 Identities=12% Similarity=0.156 Sum_probs=57.4
Q ss_pred ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee---eec----cccccccEEEEEEcCC----CCEEEEEeCC--
Q 037555 58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA---MGR----LQSHSLTVTQIRFSHD----DNLLLSVSRD-- 124 (298)
Q Consensus 58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~---~~~----~~~~~~~v~~~~~~~~----~~~l~~~~~d-- 124 (298)
..++|+|.|+|++|++- ..|.|++++.. +.. +.. ..........++++|+ +.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e------~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~ 75 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAE------RSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADE 75 (331)
T ss_dssp SEEEEEEETTSCEEEEE------TTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-T
T ss_pred CceEEEEeCCCcEEEEe------CCceEEEEeCC-CcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccC
Confidence 46799999999888865 37999999933 332 211 2335567899999994 3333433321
Q ss_pred ------CeEEEEEeccCCCCccce-eeeEEeec---cCCceEEEEEccCCCEEEEeeC
Q 037555 125 ------RQFSVFAIQRTGTGEIDY-QLIARQEA---HKRIIWSCSWNPFGHEFATGSR 172 (298)
Q Consensus 125 ------g~i~iwd~~~~~~~~~~~-~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~ 172 (298)
..|.-|............ .++..+.. ....-..|.|.|++.++++.+.
T Consensus 76 ~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 76 DGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp SSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred CCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 234444443321111001 12222222 2334567999999976666553
No 402
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.19 E-value=0.64 Score=39.12 Aligned_cols=154 Identities=8% Similarity=0.094 Sum_probs=92.8
Q ss_pred CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc-----CCCEEEEeeCCCeEEEEEccCCcc---
Q 037555 115 DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-----FGHEFATGSRDKTVKIWAVENKSS--- 186 (298)
Q Consensus 115 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~~wd~~~~~~--- 186 (298)
...|++|+..|.++||+........ ...+.+ ..-..+|..+..-+ +...||+ =.-.++.+|.+.....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~--~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQP--EDLLLE-TQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCC--ccEEEE-EecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence 3589999999999999985433221 112222 22356787776543 2234444 3356788888743211
Q ss_pred ------eeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCccc
Q 037555 187 ------VKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHV 260 (298)
Q Consensus 187 ------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (298)
+..+... ..+....+++.-|.+...+..+|.+=+.||.+.+|+-+.. .....+. .....
T Consensus 113 ~g~~~~L~~~yeh-~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~-------------~f~~~lp-~~llP 177 (418)
T PF14727_consen 113 HGNQYQLELIYEH-SLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF-------------AFSRFLP-DFLLP 177 (418)
T ss_pred cCcEEEEEEEEEE-ecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE-------------EEEEEcC-CCCCC
Confidence 1111111 1345567788888775554578999999999999997643 1111111 11233
Q ss_pred ceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 261 AAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 261 ~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
++ +++.+.. ..|++++.+..|..|..+
T Consensus 178 gP---l~Y~~~t-------Dsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 178 GP---LCYCPRT-------DSFVTASSSWTLECYKYQ 204 (418)
T ss_pred cC---eEEeecC-------CEEEEecCceeEEEecHH
Confidence 33 5677777 788888888888877653
No 403
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.12 E-value=0.62 Score=38.93 Aligned_cols=128 Identities=12% Similarity=0.127 Sum_probs=63.8
Q ss_pred eEEEEEcCCCCEEEeEeccC---------------CCCceEEEEEEcCCceeeecccccc--ccEEEEEEcCCC--CE-E
Q 037555 59 LFSLCCDHQGKLVASSCKAQ---------------STAAAEIWLWEVGSWKAMGRLQSHS--LTVTQIRFSHDD--NL-L 118 (298)
Q Consensus 59 v~~~~~s~~~~~l~~~~~~~---------------~~~d~~i~vw~~~~~~~~~~~~~~~--~~v~~~~~~~~~--~~-l 118 (298)
-+.+.|.|..+.++++.... .....++.+||+.+.+.++++.-.. .....+.|..+. .+ +
T Consensus 183 gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gF 262 (461)
T PF05694_consen 183 GYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGF 262 (461)
T ss_dssp ---EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEE
T ss_pred CCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceE
Confidence 44566677667777764421 0135789999999999999887432 346678886643 33 4
Q ss_pred EEEeCCCeEEEEEeccCCCCccceeeeEEee-----------------ccCCceEEEEEccCCCEEEEee-CCCeEEEEE
Q 037555 119 LSVSRDRQFSVFAIQRTGTGEIDYQLIARQE-----------------AHKRIIWSCSWNPFGHEFATGS-RDKTVKIWA 180 (298)
Q Consensus 119 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-----------------~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd 180 (298)
+.+....+|..|--.....-. .+.+..+. ....-|+.|..|.|.++|+... ..|.|+.||
T Consensus 263 vg~aLss~i~~~~k~~~g~W~--a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYD 340 (461)
T PF05694_consen 263 VGCALSSSIWRFYKDDDGEWA--AEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYD 340 (461)
T ss_dssp EEEE--EEEEEEEE-ETTEEE--EEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE
T ss_pred EEEeccceEEEEEEcCCCCee--eeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEe
Confidence 444445555555432211100 11111111 1134578999999999987776 589999999
Q ss_pred ccCCccee
Q 037555 181 VENKSSVK 188 (298)
Q Consensus 181 ~~~~~~~~ 188 (298)
+......+
T Consensus 341 ISDP~~Pk 348 (461)
T PF05694_consen 341 ISDPFNPK 348 (461)
T ss_dssp -SSTTS-E
T ss_pred cCCCCCCc
Confidence 98765544
No 404
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.10 E-value=0.51 Score=41.76 Aligned_cols=153 Identities=12% Similarity=0.130 Sum_probs=79.3
Q ss_pred cCCCCEEEeEeccC-CCCceEEEEEEcCCceee--eccccccccEEEEEEcCCCCEEEEEeCC------CeEEEEEeccC
Q 037555 65 DHQGKLVASSCKAQ-STAAAEIWLWEVGSWKAM--GRLQSHSLTVTQIRFSHDDNLLLSVSRD------RQFSVFAIQRT 135 (298)
Q Consensus 65 s~~~~~l~~~~~~~-~~~d~~i~vw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~ 135 (298)
+..+.+++.||..+ ...-..+..||..+++.. ..+. ....-.++++. ++.+.++|+.| ..+..||....
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCC
Confidence 33466777776632 122357888998876433 2233 22223344444 56788888888 34667777654
Q ss_pred CCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCe-----EEEEEccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555 136 GTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKT-----VKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR 210 (298)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (298)
. +..+........... ++.. +|...++|+.||. +-.||.++.+-.. ...............-+
T Consensus 360 ~-----W~~~a~M~~~R~~~~-v~~l-~g~iYavGG~dg~~~l~svE~YDp~~~~W~~----va~m~~~r~~~gv~~~~- 427 (571)
T KOG4441|consen 360 Q-----WTPVAPMNTKRSDFG-VAVL-DGKLYAVGGFDGEKSLNSVECYDPVTNKWTP----VAPMLTRRSGHGVAVLG- 427 (571)
T ss_pred c-----eeccCCccCccccce-eEEE-CCEEEEEeccccccccccEEEecCCCCcccc----cCCCCcceeeeEEEEEC-
Confidence 3 333332222222211 2111 5778888888864 7778877654321 11122222333332222
Q ss_pred cCCccEEEEeecCC------cEEEEEeeec
Q 037555 211 QKNHGFLAVGMESG------VIELWSISVN 234 (298)
Q Consensus 211 ~~~~~~l~~g~~dg------~i~vwd~~~~ 234 (298)
+.+.++|+.++ ++..||..+.
T Consensus 428 ---g~iYi~GG~~~~~~~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 428 ---GKLYIIGGGDGSSNCLNSVECYDPETN 454 (571)
T ss_pred ---CEEEEEcCcCCCccccceEEEEcCCCC
Confidence 15677777554 4556666554
No 405
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.96 E-value=0.79 Score=38.19 Aligned_cols=154 Identities=11% Similarity=0.117 Sum_probs=78.4
Q ss_pred CceEEEEEcCCCCEEEeEeccC------CCCce-EEEEEEcCC--cee--eeccccccccEEEEEEcCCCCEEEEEeCCC
Q 037555 57 NELFSLCCDHQGKLVASSCKAQ------STAAA-EIWLWEVGS--WKA--MGRLQSHSLTVTQIRFSHDDNLLLSVSRDR 125 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~------~~~d~-~i~vw~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 125 (298)
.....|+|.++|+++++-..+. ....+ .|.+++-.. ++. ...+...-.....+++.+++ +++ +....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 4567899999999887753110 00122 677776432 332 23343333456889999888 444 44443
Q ss_pred eEEEEEeccCCCCc-cceeeeEEeec----cCCceEEEEEccCCCEEEEeeCC-------------------CeEEEEEc
Q 037555 126 QFSVFAIQRTGTGE-IDYQLIARQEA----HKRIIWSCSWNPFGHEFATGSRD-------------------KTVKIWAV 181 (298)
Q Consensus 126 ~i~iwd~~~~~~~~-~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d-------------------g~i~~wd~ 181 (298)
..++.+........ ....++..+.. +......++|.|++.+.++-+.. |.|.-+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 33333443211111 10112222222 12447789999998766654421 33444454
Q ss_pred cCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee
Q 037555 182 ENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM 221 (298)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~ 221 (298)
...+. . + ...++ .....++|+|.+ .++++-.
T Consensus 172 dg~~~-e-~-~a~G~-rnp~Gl~~d~~G-----~l~~tdn 202 (367)
T TIGR02604 172 DGGKL-R-V-VAHGF-QNPYGHSVDSWG-----DVFFCDN 202 (367)
T ss_pred CCCeE-E-E-EecCc-CCCccceECCCC-----CEEEEcc
Confidence 44332 1 1 11222 335689999987 5665543
No 406
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.90 E-value=1.4 Score=40.54 Aligned_cols=159 Identities=11% Similarity=0.063 Sum_probs=101.9
Q ss_pred eEEEEEcCC-CCEEEeEec----cC-CCCceEEEEEEcCCceeeeccccc--cccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 037555 59 LFSLCCDHQ-GKLVASSCK----AQ-STAAAEIWLWEVGSWKAMGRLQSH--SLTVTQIRFSHDDNLLLSVSRDRQFSVF 130 (298)
Q Consensus 59 v~~~~~s~~-~~~l~~~~~----~~-~~~d~~i~vw~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iw 130 (298)
|.++.|..| ++++++|.. +. ....|.|.|+....++.++.+..+ .+.+.++..- +|+++|.- ...|++|
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~I--n~~vrLy 853 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAGI--NQSVRLY 853 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEec--CcEEEEE
Confidence 555567766 667776632 11 124578888888764444433222 2344444322 56665544 5689999
Q ss_pred EeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555 131 AIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR 210 (298)
Q Consensus 131 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (298)
++.. .+.++....+..++..+...-.+..+++|.--+++.+...+..+.......-..++...+++.+-.+.
T Consensus 854 e~t~-------~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d- 925 (1096)
T KOG1897|consen 854 EWTT-------ERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDD- 925 (1096)
T ss_pred Eccc-------cceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCc-
Confidence 9886 33455556677888888888889999999988888877766555322222333466778888887765
Q ss_pred cCCccEEEEeecCCcEEEEEeee
Q 037555 211 QKNHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 211 ~~~~~~l~~g~~dg~i~vwd~~~ 233 (298)
.++.+..+|.+++-...+
T Consensus 926 -----~ylgae~~gNlf~v~~d~ 943 (1096)
T KOG1897|consen 926 -----TYLGAENSGNLFTVRKDS 943 (1096)
T ss_pred -----eEEeecccccEEEEEecC
Confidence 556666788888776653
No 407
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.78 E-value=0.74 Score=36.48 Aligned_cols=132 Identities=13% Similarity=0.060 Sum_probs=73.5
Q ss_pred CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeee-
Q 037555 114 DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILA- 192 (298)
Q Consensus 114 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~- 192 (298)
.++.|+.|+.+| +.+++.... ....... +...|..+...|+-+.|++-+ |+.++++++...........
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~------~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~ 75 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDP------SKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPL 75 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCC------ccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccc
Confidence 577899999998 888888321 1112221 223399999999888877776 49999999986554331100
Q ss_pred ----------cCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccce
Q 037555 193 ----------LPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAA 262 (298)
Q Consensus 193 ----------~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (298)
.......+...+ ......+...|+++ ....|.+|.......... ...+.+. -...
T Consensus 76 ~~~~~~~~~~~~~~~~~v~~f~--~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~--------~~~ke~~----lp~~ 140 (275)
T PF00780_consen 76 AFPKSRSLPTKLPETKGVSFFA--VNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFS--------KLLKEIS----LPDP 140 (275)
T ss_pred cccccccccccccccCCeeEEe--eccccccceEEEEE-ECCEEEEEEEECCccccc--------ceeEEEE----cCCC
Confidence 001122233333 11111112344444 455899998876421100 1222222 3467
Q ss_pred EEEEEeec
Q 037555 263 VNRMAWKT 270 (298)
Q Consensus 263 v~~~~~~~ 270 (298)
+.+++|.+
T Consensus 141 ~~~i~~~~ 148 (275)
T PF00780_consen 141 PSSIAFLG 148 (275)
T ss_pred cEEEEEeC
Confidence 88888884
No 408
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.75 E-value=0.24 Score=45.84 Aligned_cols=145 Identities=14% Similarity=0.189 Sum_probs=87.4
Q ss_pred ccEEEEEEcCCCCEEEEE--eCCCeEEEEEeccCCCCccceeeeEEee------ccCCceEEEEEccCC-CEEEEeeCCC
Q 037555 104 LTVTQIRFSHDDNLLLSV--SRDRQFSVFAIQRTGTGEIDYQLIARQE------AHKRIIWSCSWNPFG-HEFATGSRDK 174 (298)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~-~~l~~~~~dg 174 (298)
.++..+...+|+...++. +.+-.|..||++.-..... .....+. .......++.|+|.- ...++...|+
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~--~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dl 178 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRY--ETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDL 178 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhh--hhccccccccchhccccccccccccCCccchhhhhcccc
Confidence 355666667776654443 3344788999876432210 0111111 122344677888843 3456677899
Q ss_pred eEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeec
Q 037555 175 TVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFD 254 (298)
Q Consensus 175 ~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 254 (298)
.|++..+....... ..++ .....++++|+|.| ..++.|-..|.+.-|...-.. ...+.
T Consensus 179 sl~V~~~~~~~~~v--~s~p-~t~~~Tav~WSprG-----KQl~iG~nnGt~vQy~P~lei--------------k~~ip 236 (1405)
T KOG3630|consen 179 SLRVKSTKQLAQNV--TSFP-VTNSQTAVLWSPRG-----KQLFIGRNNGTEVQYEPSLEI--------------KSEIP 236 (1405)
T ss_pred chhhhhhhhhhhhh--cccC-cccceeeEEecccc-----ceeeEecCCCeEEEeecccce--------------eeccc
Confidence 99988776543322 1233 55678999999999 789999999999888764321 11111
Q ss_pred cCCc-ccceEEEEEeecCC
Q 037555 255 PFAC-HVAAVNRMAWKTHE 272 (298)
Q Consensus 255 ~~~~-~~~~v~~~~~~~~~ 272 (298)
...- ....|.+|+|-...
T Consensus 237 ~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 237 EPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred CCCcCCCcceeEEEEecce
Confidence 0101 14678999998766
No 409
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.70 E-value=0.54 Score=39.27 Aligned_cols=139 Identities=15% Similarity=0.151 Sum_probs=83.9
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcc
Q 037555 107 TQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSS 186 (298)
Q Consensus 107 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 186 (298)
+.+-|...++.++ +...|.+.=|-+..... -.++.......++|.++.|++|.+.+|+--.+..|-+++....+.
T Consensus 26 ngvFfDDaNkqlf-avrSggatgvvvkgpnd----DVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~ 100 (657)
T KOG2377|consen 26 NGVFFDDANKQLF-AVRSGGATGVVVKGPND----DVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNS 100 (657)
T ss_pred cceeeccCcceEE-EEecCCeeEEEEeCCCC----CCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCch
Confidence 4455554333333 33445555565554332 122333344567999999999999999999999999998854333
Q ss_pred eeee-eecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEE
Q 037555 187 VKQI-LALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNR 265 (298)
Q Consensus 187 ~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 265 (298)
.... ...+.....|....|.... -++.-...| +-+|...... +.++. .+.|...|+-
T Consensus 101 ~l~~~~~ck~k~~~IlGF~W~~s~------e~A~i~~~G-~e~y~v~pek------------rslRl---Vks~~~nvnW 158 (657)
T KOG2377|consen 101 QLEYTQECKTKNANILGFCWTSST------EIAFITDQG-IEFYQVLPEK------------RSLRL---VKSHNLNVNW 158 (657)
T ss_pred hhHHHHHhccCcceeEEEEEecCe------eEEEEecCC-eEEEEEchhh------------hhhhh---hhhcccCccE
Confidence 2211 1222334558899998864 345444444 6677665432 22222 3357888888
Q ss_pred EEeecCC
Q 037555 266 MAWKTHE 272 (298)
Q Consensus 266 ~~~~~~~ 272 (298)
..|.++.
T Consensus 159 y~yc~et 165 (657)
T KOG2377|consen 159 YMYCPET 165 (657)
T ss_pred EEEcccc
Confidence 8898887
No 410
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.62 E-value=1.2 Score=40.48 Aligned_cols=79 Identities=14% Similarity=0.146 Sum_probs=51.6
Q ss_pred CCceEEEEEccCCCEEEEeeCCCeEEEEEccC----------Ccceeeeeec--------CCCCCceEEEEEeeccccCC
Q 037555 152 KRIIWSCSWNPFGHEFATGSRDKTVKIWAVEN----------KSSVKQILAL--------PPFNSSVTALSWVGLDRQKN 213 (298)
Q Consensus 152 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~----------~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~~ 213 (298)
.-.|..+.++|+|.+++..+..|. .|..+.. ++.......+ ......|..+.|+|.+. +
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~--~ 160 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSE--S 160 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCC--C
Confidence 346889999999999998887664 3333321 1111111111 12345788999999852 2
Q ss_pred ccEEEEeecCCcEEEEEeee
Q 037555 214 HGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 214 ~~~l~~g~~dg~i~vwd~~~ 233 (298)
+..|+.-..|+.+++||+..
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCeEEEEecCCEEEEEecCC
Confidence 25778888899999999863
No 411
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=95.61 E-value=0.56 Score=39.81 Aligned_cols=145 Identities=11% Similarity=0.133 Sum_probs=90.2
Q ss_pred CCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCC--------CEEEEEeCCCeEEEEEeccCCC
Q 037555 66 HQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDD--------NLLLSVSRDRQFSVFAIQRTGT 137 (298)
Q Consensus 66 ~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~l~~~~~dg~i~iwd~~~~~~ 137 (298)
.+..+|..-+ .+...++-.|++.|+.+.....|... -+.|.|+. +.|+..+ +..|.-.|.+..+.
T Consensus 477 ~dssli~~dg----~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gN 549 (776)
T COG5167 477 NDSSLIYLDG----GERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGN 549 (776)
T ss_pred CCcceEEecC----CCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-ccceEEecccccCC
Confidence 3444555443 34567888899999999888877665 47777743 2344444 44454456554321
Q ss_pred CccceeeeEEeeccCCceEEEEEcc----CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCC
Q 037555 138 GEIDYQLIARQEAHKRIIWSCSWNP----FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKN 213 (298)
Q Consensus 138 ~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (298)
.+.. ......++.-.|+. ...++++++..|-|++||--..+... .+++....|..+..+.+|
T Consensus 550 ------Ki~v-~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKt---alP~lG~aIk~idvta~G---- 615 (776)
T COG5167 550 ------KIKV-VESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKT---ALPGLGDAIKHIDVTANG---- 615 (776)
T ss_pred ------ceee-eeehhccccccccccccccCceEEEecCCCceeeehhhcchhhh---cCcccccceeeeEeecCC----
Confidence 1111 11122223333332 44689999999999999965544333 567788889999999988
Q ss_pred ccEEEEeecCCcEEEEEeee
Q 037555 214 HGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 214 ~~~l~~g~~dg~i~vwd~~~ 233 (298)
.++++.|. ..+-+.|++-
T Consensus 616 -k~ilaTCk-~yllL~d~~i 633 (776)
T COG5167 616 -KHILATCK-NYLLLTDVPI 633 (776)
T ss_pred -cEEEEeec-ceEEEEeccc
Confidence 56666554 5677777753
No 412
>PHA02790 Kelch-like protein; Provisional
Probab=95.58 E-value=1.4 Score=38.25 Aligned_cols=110 Identities=5% Similarity=-0.044 Sum_probs=53.5
Q ss_pred CCCEEEeEeccCCCCceEEEEEEcCCceeee--ccccccccEEEEEEcCCCCEEEEEeCCC--eEEEEEeccCCCCccce
Q 037555 67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMG--RLQSHSLTVTQIRFSHDDNLLLSVSRDR--QFSVFAIQRTGTGEIDY 142 (298)
Q Consensus 67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~ 142 (298)
++.++++||.+....-..+..||..+++... .+.........+. -++.+.+.|+.++ .+..||..... +
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~-----W 343 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAA-----W 343 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCe-----E
Confidence 4556677764321122467788887654322 2221111122222 3677777777543 46677765322 3
Q ss_pred eeeEEeeccCCceEEEEEccCCCEEEEeeCCC---eEEEEEccCCc
Q 037555 143 QLIARQEAHKRIIWSCSWNPFGHEFATGSRDK---TVKIWAVENKS 185 (298)
Q Consensus 143 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~~wd~~~~~ 185 (298)
..+..+....... +++ .-++...+.|+.++ .+..||.++.+
T Consensus 344 ~~~~~l~~~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~ 387 (480)
T PHA02790 344 VNMPSLLKPRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHDQ 387 (480)
T ss_pred EECCCCCCCCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCCE
Confidence 3332222111111 122 22566777777543 46778877644
No 413
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.49 E-value=0.084 Score=28.11 Aligned_cols=31 Identities=10% Similarity=0.069 Sum_probs=25.0
Q ss_pred CceEEEEEcCCC---CEEEeEeccCCCCceEEEEEEcCC
Q 037555 57 NELFSLCCDHQG---KLVASSCKAQSTAAAEIWLWEVGS 92 (298)
Q Consensus 57 ~~v~~~~~s~~~---~~l~~~~~~~~~~d~~i~vw~~~~ 92 (298)
+.|.++.|+|.. .+|+.+ ...+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~-----E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWA-----EHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEE-----ccCCeEEEEEccc
Confidence 468999999854 488877 4578999999985
No 414
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.39 E-value=0.079 Score=28.23 Aligned_cols=31 Identities=16% Similarity=0.258 Sum_probs=25.7
Q ss_pred CceEEEEEccCC---CEEEEeeCCCeEEEEEccC
Q 037555 153 RIIWSCSWNPFG---HEFATGSRDKTVKIWAVEN 183 (298)
Q Consensus 153 ~~v~~~~~~~~~---~~l~~~~~dg~i~~wd~~~ 183 (298)
+.|.++.|+|.. .+|+.+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 358899999854 4888888889999999995
No 415
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.37 E-value=0.015 Score=51.89 Aligned_cols=146 Identities=9% Similarity=0.079 Sum_probs=80.7
Q ss_pred ceEEEEEEcCCcee-eeccccccccEEEEEEcCCC-CEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEE
Q 037555 82 AAEIWLWEVGSWKA-MGRLQSHSLTVTQIRFSHDD-NLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS 159 (298)
Q Consensus 82 d~~i~vw~~~~~~~-~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 159 (298)
.+.+++-+..+... -..+++..+.|..+.|.... ..+. -.-|.+.+|++..-...-...-.+.........+.-+.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 34455555543221 12356777888888885421 1222 33467889998763322111122233333344556666
Q ss_pred Ecc---CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc------cCCccEEEEeecCCcEEEEE
Q 037555 160 WNP---FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR------QKNHGFLAVGMESGVIELWS 230 (298)
Q Consensus 160 ~~~---~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~------~~~~~~l~~g~~dg~i~vwd 230 (298)
|.| +.-++..+-.++.|++........ . .+..|...+..++|...+. +++|..++.++.||.++.|.
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~---l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRALR-S---LFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHHH-H---HHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence 665 556666777788888877655332 1 2223555544444332221 22338999999999999888
Q ss_pred eee
Q 037555 231 ISV 233 (298)
Q Consensus 231 ~~~ 233 (298)
+.-
T Consensus 264 iyi 266 (1283)
T KOG1916|consen 264 IYI 266 (1283)
T ss_pred eee
Confidence 754
No 416
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.21 E-value=0.51 Score=39.43 Aligned_cols=105 Identities=6% Similarity=0.039 Sum_probs=69.4
Q ss_pred cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeee----ccccccccEEEEEEcCCCCEEEEEeCCCeEEE
Q 037555 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMG----RLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSV 129 (298)
Q Consensus 54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 129 (298)
...++|.++.||+|.+.||+-- .+..|.+.+....+... ..+..+..|....|+.+ .-+|..+..| +-+
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQR-----~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~ 136 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQR-----TSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEF 136 (657)
T ss_pred cCCCceeEEEeccCcceEEEEe-----cCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEE
Confidence 3456999999999999999984 48899999985433322 23345566899999866 4444444333 556
Q ss_pred EEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee
Q 037555 130 FAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS 171 (298)
Q Consensus 130 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 171 (298)
|.+... .+.++..+.|+-.|.-..|.++.+.++-++
T Consensus 137 y~v~pe------krslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 137 YQVLPE------KRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred EEEchh------hhhhhhhhhcccCccEEEEccccceEeeec
Confidence 655432 233445566777788888888776554443
No 417
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.19 E-value=1.6 Score=36.69 Aligned_cols=89 Identities=13% Similarity=0.105 Sum_probs=55.1
Q ss_pred EEEEcCCCCEEEeEeccCCCCceEEEE---EEcC-----Cceeeeccc---ccc--ccEEEEEEcC-----------CCC
Q 037555 61 SLCCDHQGKLVASSCKAQSTAAAEIWL---WEVG-----SWKAMGRLQ---SHS--LTVTQIRFSH-----------DDN 116 (298)
Q Consensus 61 ~~~~s~~~~~l~~~~~~~~~~d~~i~v---w~~~-----~~~~~~~~~---~~~--~~v~~~~~~~-----------~~~ 116 (298)
.++.+|++..||.+. .+..+.+ |+.. .+....... .++ ..|+++.|-| |..
T Consensus 6 ~isls~~~d~laiA~-----~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~ 80 (415)
T PF14655_consen 6 SISLSPDGDLLAIAR-----GQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWT 80 (415)
T ss_pred eEEecCCCCEEEEEc-----CCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcE
Confidence 567789999999984 3444443 5331 111111111 122 4677766644 356
Q ss_pred EEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc
Q 037555 117 LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP 162 (298)
Q Consensus 117 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 162 (298)
.+++|..+|.|++|... +.++....-|..+|..+.+..
T Consensus 81 ~I~VG~ssG~vrfyte~--------G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 81 CIAVGTSSGYVRFYTEN--------GVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred EEEEEecccEEEEEecc--------chHHHHHhcCccceEEEEecc
Confidence 89999999999999975 444555556777887777653
No 418
>PHA03098 kelch-like protein; Provisional
Probab=95.13 E-value=2.1 Score=37.69 Aligned_cols=151 Identities=11% Similarity=0.092 Sum_probs=69.7
Q ss_pred CCCEEEeEeccCCCCceEEEEEEcCCceeee--ccccccccEEEEEEcCCCCEEEEEeCC------CeEEEEEeccCCCC
Q 037555 67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMG--RLQSHSLTVTQIRFSHDDNLLLSVSRD------RQFSVFAIQRTGTG 138 (298)
Q Consensus 67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~ 138 (298)
++.+++.||.+....-..+..||..+.+-.. .+...... .+++. -++++++.|+.+ ..+..||+.+..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~-~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~-- 417 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYN-PCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNK-- 417 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCcc-ceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCe--
Confidence 5677777865322223467788887654322 12111111 11222 256677777632 357788876532
Q ss_pred ccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC--------CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555 139 EIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD--------KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR 210 (298)
Q Consensus 139 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (298)
+..+......... .++. ..++..++.|+.+ ..+.+||..+.+-.. +.... ....-.+++.. ++
T Consensus 418 ---W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~-~~~~~-~~r~~~~~~~~-~~- 488 (534)
T PHA03098 418 ---WSKGSPLPISHYG-GCAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTE-LSSLN-FPRINASLCIF-NN- 488 (534)
T ss_pred ---eeecCCCCccccC-ceEE-EECCEEEEECCccCCCCCcccceEEEecCCCCceee-CCCCC-cccccceEEEE-CC-
Confidence 2222221111111 1222 2245566666542 237888887654322 11111 11111122222 33
Q ss_pred cCCccEEEEeecC-----CcEEEEEeeec
Q 037555 211 QKNHGFLAVGMES-----GVIELWSISVN 234 (298)
Q Consensus 211 ~~~~~~l~~g~~d-----g~i~vwd~~~~ 234 (298)
.+++.|+.+ ..|.+||..+.
T Consensus 489 ----~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 489 ----KIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred ----EEEEEcCCcCCcccceeEEEeCCCC
Confidence 566666643 46777777654
No 419
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=95.12 E-value=0.21 Score=36.53 Aligned_cols=31 Identities=16% Similarity=0.369 Sum_probs=25.4
Q ss_pred CceEEEEEccCC------CEEEEeeCCCeEEEEEccC
Q 037555 153 RIIWSCSWNPFG------HEFATGSRDKTVKIWAVEN 183 (298)
Q Consensus 153 ~~v~~~~~~~~~------~~l~~~~~dg~i~~wd~~~ 183 (298)
..+..++|+|.| -.|++.+.++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999955 3788889999999997654
No 420
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.94 E-value=1.4 Score=34.69 Aligned_cols=124 Identities=15% Similarity=0.187 Sum_probs=76.7
Q ss_pred cccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc-CCceEEEEEccCCCEEEEeeCCCeEE
Q 037555 99 LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH-KRIIWSCSWNPFGHEFATGSRDKTVK 177 (298)
Q Consensus 99 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~ 177 (298)
+.+-...+.++.|+|+.+.|++......-.++=-.. +..+....-. -.....+.+..++++.++--.++.+.
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~-------GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~ 153 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKE-------GDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALY 153 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecC-------CceEEEecccccCChhHeEEecCCEEEEEehhcceEE
Confidence 455556699999999999888877666555553333 3444433211 11234566766666666555677888
Q ss_pred EEEccCCccee-------eeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555 178 IWAVENKSSVK-------QILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 178 ~wd~~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
++.+....... .+......+.....++|.|.. ..|+.+-+..-+.||.+...
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-----~~l~~aKEr~P~~I~~~~~~ 212 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-----HRLFVAKERNPIGIFEVTQS 212 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCC-----ceEEEEEccCCcEEEEEecC
Confidence 77666542221 111222225567899999988 67777777777888877643
No 421
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.89 E-value=0.98 Score=37.99 Aligned_cols=81 Identities=17% Similarity=0.248 Sum_probs=51.6
Q ss_pred eccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecccc---------------CC
Q 037555 149 EAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQ---------------KN 213 (298)
Q Consensus 149 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---------------~~ 213 (298)
......+.++..+|.+++.++...-|+|.++|+..+..++ ..++..+. .+.|...... ..
T Consensus 304 ~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvr---mWKGYRdA--qc~wi~~~~~~~~~~~~~~~~~~~~~~ 378 (415)
T PF14655_consen 304 PDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVR---MWKGYRDA--QCGWIEVPEEGDRDRSNSNSPKSSSRF 378 (415)
T ss_pred ccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhh---hhccCccc--eEEEEEeecccccccccccccCCCCcc
Confidence 3445668899999999888888778999999999887766 44443332 2222221100 00
Q ss_pred cc-EEEEeecCCcEEEEEeeec
Q 037555 214 HG-FLAVGMESGVIELWSISVN 234 (298)
Q Consensus 214 ~~-~l~~g~~dg~i~vwd~~~~ 234 (298)
.. +++-+-.-|.|-||.++.+
T Consensus 379 ~l~LvIyaprRg~lEvW~~~~g 400 (415)
T PF14655_consen 379 ALFLVIYAPRRGILEVWSMRQG 400 (415)
T ss_pred eEEEEEEeccCCeEEEEecCCC
Confidence 12 3334556788899988765
No 422
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.65 E-value=2.2 Score=35.38 Aligned_cols=154 Identities=10% Similarity=0.062 Sum_probs=76.1
Q ss_pred EEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccce
Q 037555 63 CCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDY 142 (298)
Q Consensus 63 ~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 142 (298)
+|.++|+.|+.++.. .....+.+.|+.+++..+.-.+-........++|+.+.++-......|+-.|+.+.+
T Consensus 42 ~ft~dG~kllF~s~~--dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e------ 113 (386)
T PF14583_consen 42 CFTDDGRKLLFASDF--DGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE------ 113 (386)
T ss_dssp -B-TTS-EEEEEE-T--TSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--------
T ss_pred CcCCCCCEEEEEecc--CCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc------
Confidence 457788776665532 336789999999888765433322223356677888877666566788888888732
Q ss_pred eeeEEeeccCCceEEEEEc--cCCCEEEEeeC----------------------CCeEEEEEccCCcceeeeeecCCCCC
Q 037555 143 QLIARQEAHKRIIWSCSWN--PFGHEFATGSR----------------------DKTVKIWAVENKSSVKQILALPPFNS 198 (298)
Q Consensus 143 ~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~----------------------dg~i~~wd~~~~~~~~~~~~~~~~~~ 198 (298)
....+......+-...|. .++..++-.-. ...|..-|+++++... +.....
T Consensus 114 -~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~----v~~~~~ 188 (386)
T PF14583_consen 114 -ERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKV----VFEDTD 188 (386)
T ss_dssp -EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEE----EEEESS
T ss_pred -EEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeE----EEecCc
Confidence 223333334444444453 34444432211 1235555666655432 222455
Q ss_pred ceEEEEEeeccccCCccEEEEeecC---C-cEEEEEeee
Q 037555 199 SVTALSWVGLDRQKNHGFLAVGMES---G-VIELWSISV 233 (298)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~l~~g~~d---g-~i~vwd~~~ 233 (298)
.+..+.|+|..+ .+|+-|.+. . .-+||-+++
T Consensus 189 wlgH~~fsP~dp----~li~fCHEGpw~~Vd~RiW~i~~ 223 (386)
T PF14583_consen 189 WLGHVQFSPTDP----TLIMFCHEGPWDLVDQRIWTINT 223 (386)
T ss_dssp -EEEEEEETTEE----EEEEEEE-S-TTTSS-SEEEEET
T ss_pred cccCcccCCCCC----CEEEEeccCCcceeceEEEEEEc
Confidence 677889999875 566655432 2 125666554
No 423
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.60 E-value=1.6 Score=41.41 Aligned_cols=167 Identities=14% Similarity=0.168 Sum_probs=97.1
Q ss_pred CCCceEEEEEcCC-CCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEE--------cCCCCEEEEEeCCC
Q 037555 55 HGNELFSLCCDHQ-GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRF--------SHDDNLLLSVSRDR 125 (298)
Q Consensus 55 h~~~v~~~~~s~~-~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~--------~~~~~~l~~~~~dg 125 (298)
|...-..+-+-|. ++.=++. |+.+.+|+.+++.....+.+....|..+.. -|.=++++..+.--
T Consensus 77 ~~~~~~~mGiFpeI~RaWiTi-------Dn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ 149 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGRAWITI-------DNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPV 149 (1311)
T ss_pred CcceeeeeccchhhcceEEEe-------CCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccc
Confidence 4444444444454 4444444 899999999997777777777777766653 22334444444455
Q ss_pred eEEEEEeccCCCCccce--eeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEE--EEccCC---c-c-----------
Q 037555 126 QFSVFAIQRTGTGEIDY--QLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKI--WAVENK---S-S----------- 186 (298)
Q Consensus 126 ~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~--wd~~~~---~-~----------- 186 (298)
.|.++-+.......... .....+....-.|.++....+|+.|++|-+ |.|.- |....+ + +
T Consensus 150 ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~d-g~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls 228 (1311)
T KOG1900|consen 150 EIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRD-GNLYELVYQAEDGWFGSRCRKICLTKSVLS 228 (1311)
T ss_pred eEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeecC-CCEEEEEEeccCchhhcccccccCchhHHH
Confidence 67777665432211101 111222233456888887777877776654 43332 111110 0 0
Q ss_pred --eeeeeecC-CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555 187 --VKQILALP-PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 187 --~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
+..+..+. .+..+|..++..... .++.+-++.|.|.+|++...
T Consensus 229 ~lvPs~~~~~~~~~dpI~qi~ID~SR-----~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 229 SLVPSLLSVPGSSKDPIRQITIDNSR-----NILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred HhhhhhhcCCCCCCCcceeeEecccc-----ceeeeeccCceEEEEEccCC
Confidence 01112233 456789999988766 79999999999999999763
No 424
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.58 E-value=3.3 Score=37.14 Aligned_cols=51 Identities=18% Similarity=0.347 Sum_probs=38.9
Q ss_pred ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEecc
Q 037555 82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQR 134 (298)
Q Consensus 82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 134 (298)
-..|+|++.. |+.+..+.-....+..+.|+.+. .|+....+|++++|++..
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLG 113 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecch
Confidence 4578999985 77777655444478899999654 677778899999999863
No 425
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.57 E-value=1.8 Score=34.16 Aligned_cols=140 Identities=11% Similarity=0.106 Sum_probs=86.5
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEcc
Q 037555 103 SLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVE 182 (298)
Q Consensus 103 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~ 182 (298)
...+..+.++ +++...+..+.-+++.|+.++.... .+..+. -.+.-.++.. .|++.+++..|.-+.+.|+.
T Consensus 86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~----~~~~ln-t~gyaygv~v--sGn~aYVadlddgfLivdvs 156 (370)
T COG5276 86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPT----LIGFLN-TDGYAYGVYV--SGNYAYVADLDDGFLIVDVS 156 (370)
T ss_pred hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcc----eecccc-CCceEEEEEe--cCCEEEEeeccCcEEEEECC
Confidence 4556677775 4577777788889999999875422 222222 1233444444 48899998866668888998
Q ss_pred CCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccce
Q 037555 183 NKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAA 262 (298)
Q Consensus 183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (298)
+.......-........-..++.+. ++-..+..|+-+.+-|+.+...+ ..+.... -...
T Consensus 157 dpssP~lagrya~~~~d~~~v~ISG-------n~AYvA~~d~GL~ivDVSnp~sP----------vli~~~n----~g~g 215 (370)
T COG5276 157 DPSSPQLAGRYALPGGDTHDVAISG-------NYAYVAWRDGGLTIVDVSNPHSP----------VLIGSYN----TGPG 215 (370)
T ss_pred CCCCceeeeeeccCCCCceeEEEec-------CeEEEEEeCCCeEEEEccCCCCC----------eEEEEEe----cCCc
Confidence 7765543323333333345666665 46667778888999999876432 2222221 1225
Q ss_pred EEEEEeecCC
Q 037555 263 VNRMAWKTHE 272 (298)
Q Consensus 263 v~~~~~~~~~ 272 (298)
+.++..+++.
T Consensus 216 ~~sv~vsdnr 225 (370)
T COG5276 216 TYSVSVSDNR 225 (370)
T ss_pred eEEEEecCCe
Confidence 6777777765
No 426
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.54 E-value=0.65 Score=43.86 Aligned_cols=154 Identities=8% Similarity=0.160 Sum_probs=79.8
Q ss_pred eCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEE--------EccCCCEEEEeeCCCeEEEEEccCCcceeee---
Q 037555 122 SRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS--------WNPFGHEFATGSRDKTVKIWAVENKSSVKQI--- 190 (298)
Q Consensus 122 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~--- 190 (298)
+.|..+.+|+.++... ...+.+-...|..+. |.|.=+++++.+.--.|.++-+.-.+.....
T Consensus 96 TiDn~L~lWny~~~~e-------~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f 168 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNE-------LAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIF 168 (1311)
T ss_pred EeCCeEEEEEcCCCCc-------cccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccc
Confidence 4588999999998432 333333334444443 2232234444443444555544322111100
Q ss_pred ---eecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEee--ecc------cccccCCCCCCcceeeeeccCC-c
Q 037555 191 ---LALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSIS--VNR------TNDVSTPAPSTANIIIRFDPFA-C 258 (298)
Q Consensus 191 ---~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~--~~~------~~~~~~~~~~~~~~~~~~~~~~-~ 258 (298)
..+.-.+..|.++....+| .++ .++.|| .+|.+. ... ..........-...+..+..+. .
T Consensus 169 ~~~~~i~~dg~~V~~I~~t~nG-----RIF-~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~ 240 (1311)
T KOG1900|consen 169 NTSFKISVDGVSVNCITYTENG-----RIF-FAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGS 240 (1311)
T ss_pred ccceeeecCCceEEEEEeccCC-----cEE-EeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCC
Confidence 1222235568888866666 444 455666 445442 111 0000000000001111122233 5
Q ss_pred ccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 259 HVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 259 ~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+..+|..|...... ..|.+-++.|+|++|++.
T Consensus 241 ~~dpI~qi~ID~SR-------~IlY~lsek~~v~~Y~i~ 272 (1311)
T KOG1900|consen 241 SKDPIRQITIDNSR-------NILYVLSEKGTVSAYDIG 272 (1311)
T ss_pred CCCcceeeEecccc-------ceeeeeccCceEEEEEcc
Confidence 67899999998887 899999999999999974
No 427
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.47 E-value=1.3 Score=37.70 Aligned_cols=145 Identities=17% Similarity=0.234 Sum_probs=81.3
Q ss_pred CCCEEE-EEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCC--------CEEEEeeCCCeEEEEEccCC
Q 037555 114 DDNLLL-SVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG--------HEFATGSRDKTVKIWAVENK 184 (298)
Q Consensus 114 ~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~l~~~~~dg~i~~wd~~~~ 184 (298)
+.++|+ .++....++-.|+.. ++.+.....|... -+.|.|.. +.|+-.| +..|.-.|.+-.
T Consensus 478 dssli~~dg~~~~kLykmDIEr-------GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~ 547 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIER-------GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRAR 547 (776)
T ss_pred CcceEEecCCCcccceeeeccc-------ceeeeEeecCCcc--eeecCCchhHHhcCccceEEeec-ccceEEeccccc
Confidence 444443 455556677777776 6667777766654 45666643 3444444 444444455532
Q ss_pred c-ceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceE
Q 037555 185 S-SVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAV 263 (298)
Q Consensus 185 ~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 263 (298)
. .+. .. .....++.-.|+.... ....++++++..|.|++||.-..+... .+.+....|
T Consensus 548 gNKi~---v~-esKdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKt----------------alP~lG~aI 606 (776)
T COG5167 548 GNKIK---VV-ESKDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKT----------------ALPGLGDAI 606 (776)
T ss_pred CCcee---ee-eehhcccccccccccc-ccCceEEEecCCCceeeehhhcchhhh----------------cCcccccce
Confidence 2 221 11 1222233333333221 111599999999999999975432111 145677889
Q ss_pred EEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 264 NRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
..+..+.+|+ ..|+|| ...|.+-|++
T Consensus 607 k~idvta~Gk------~ilaTC--k~yllL~d~~ 632 (776)
T COG5167 607 KHIDVTANGK------HILATC--KNYLLLTDVP 632 (776)
T ss_pred eeeEeecCCc------EEEEee--cceEEEEecc
Confidence 9999999984 455555 3456666554
No 428
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.39 E-value=1.9 Score=33.66 Aligned_cols=156 Identities=6% Similarity=0.025 Sum_probs=79.2
Q ss_pred eeeccc-cccccEEEEEEcCCCCEEEEEeCCC--eEEEEEeccCCCCccceeeeEEeecc-CCceEEEEEccCCCEEEEe
Q 037555 95 AMGRLQ-SHSLTVTQIRFSHDDNLLLSVSRDR--QFSVFAIQRTGTGEIDYQLIARQEAH-KRIIWSCSWNPFGHEFATG 170 (298)
Q Consensus 95 ~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~ 170 (298)
.+.++. ....-...+.|..++.++-+.+.-| .|+.+|+.+++ ......-. .----.++.. ++..+.-.
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~-------~~~~~~l~~~~FgEGit~~-~d~l~qLT 106 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGK-------VLQSVPLPPRYFGEGITIL-GDKLYQLT 106 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSS-------EEEEEE-TTT--EEEEEEE-TTEEEEEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCc-------EEEEEECCccccceeEEEE-CCEEEEEE
Confidence 344444 1233456788877888888888776 68888887632 22222211 1111233333 23333334
Q ss_pred eCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCccee
Q 037555 171 SRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANII 250 (298)
Q Consensus 171 ~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 250 (298)
-.++...+||..+.+.+..+ . ....-+.++ .++ ..|+.......|+++|..+.+........ ....++
T Consensus 107 Wk~~~~f~yd~~tl~~~~~~-~---y~~EGWGLt--~dg-----~~Li~SDGS~~L~~~dP~~f~~~~~i~V~-~~g~pv 174 (264)
T PF05096_consen 107 WKEGTGFVYDPNTLKKIGTF-P---YPGEGWGLT--SDG-----KRLIMSDGSSRLYFLDPETFKEVRTIQVT-DNGRPV 174 (264)
T ss_dssp SSSSEEEEEETTTTEEEEEE-E----SSS--EEE--ECS-----SCEEEE-SSSEEEEE-TTT-SEEEEEE-E-ETTEE-
T ss_pred ecCCeEEEEccccceEEEEE-e---cCCcceEEE--cCC-----CEEEEECCccceEEECCcccceEEEEEEE-ECCEEC
Confidence 46789999999988777644 2 234556666 334 45666666778999987654322111110 111333
Q ss_pred eeeccCCcccceEEEEEeec
Q 037555 251 IRFDPFACHVAAVNRMAWKT 270 (298)
Q Consensus 251 ~~~~~~~~~~~~v~~~~~~~ 270 (298)
..++++.-..+.|.+=.|..
T Consensus 175 ~~LNELE~i~G~IyANVW~t 194 (264)
T PF05096_consen 175 SNLNELEYINGKIYANVWQT 194 (264)
T ss_dssp --EEEEEEETTEEEEEETTS
T ss_pred CCcEeEEEEcCEEEEEeCCC
Confidence 34444444555565555543
No 429
>PRK13684 Ycf48-like protein; Provisional
Probab=94.23 E-value=2.6 Score=34.60 Aligned_cols=157 Identities=13% Similarity=0.050 Sum_probs=84.7
Q ss_pred CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeee-ccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEecc
Q 037555 56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMG-RLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQR 134 (298)
Q Consensus 56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 134 (298)
...+.++.+.|++.+++++. .|.+..-.-..++.-. ....-...++++.+.++++.++++ ..|.+.+=..+.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~------~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~ 244 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS------RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDD 244 (334)
T ss_pred cceEEEEEECCCCeEEEEeC------CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCC
Confidence 45688999999988887773 4555432111122111 122345678999999998876665 467665322222
Q ss_pred CCCCccceeeeEEe-eccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCC
Q 037555 135 TGTGEIDYQLIARQ-EAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKN 213 (298)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (298)
+.. +.....- ......+..+.+.+++..+++ +.+|.+. .....++...............+.+.|...+
T Consensus 245 G~s----W~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~---- 314 (334)
T PRK13684 245 LES----WSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPE---- 314 (334)
T ss_pred CCc----cccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCC----
Confidence 111 2211110 112235788889987765554 4567554 3444444443221112233457778877665
Q ss_pred ccEEEEeecCCcEEEEEe
Q 037555 214 HGFLAVGMESGVIELWSI 231 (298)
Q Consensus 214 ~~~l~~g~~dg~i~vwd~ 231 (298)
..++ .+..|.|..|+-
T Consensus 315 -~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 315 -KGFV-LGQRGVLLRYVG 330 (334)
T ss_pred -ceEE-ECCCceEEEecC
Confidence 4554 456787776653
No 430
>PRK13684 Ycf48-like protein; Provisional
Probab=93.96 E-value=3 Score=34.28 Aligned_cols=156 Identities=13% Similarity=0.093 Sum_probs=80.6
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEcc
Q 037555 103 SLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVE 182 (298)
Q Consensus 103 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~ 182 (298)
...+.++.+.|++.+++++ ..|.+..- .+.... .+..+ .......++.+.+.++++.++++ ..|.+++=...
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s-~~~gg~---tW~~~--~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d 243 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYST-WEPGQT---AWTPH--QRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPD 243 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEE-cCCCCC---eEEEe--eCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCC
Confidence 4578899999987665554 45555421 111100 02222 12344678899999988876665 45766532333
Q ss_pred CCcceeeeeecC-C-CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCccc
Q 037555 183 NKSSVKQILALP-P-FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHV 260 (298)
Q Consensus 183 ~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (298)
.+...... ..+ . ....+.++.+.+.+ ..++ ++.+|.|. .....+ +....+.....-.
T Consensus 244 ~G~sW~~~-~~~~~~~~~~l~~v~~~~~~-----~~~~-~G~~G~v~-~S~d~G-------------~tW~~~~~~~~~~ 302 (334)
T PRK13684 244 DLESWSKP-IIPEITNGYGYLDLAYRTPG-----EIWA-GGGNGTLL-VSKDGG-------------KTWEKDPVGEEVP 302 (334)
T ss_pred CCCccccc-cCCccccccceeeEEEcCCC-----CEEE-EcCCCeEE-EeCCCC-------------CCCeECCcCCCCC
Confidence 33332211 111 0 12347788888866 4444 44567554 333322 1111111001122
Q ss_pred ceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555 261 AAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ 295 (298)
Q Consensus 261 ~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~ 295 (298)
...+.+.|..++ ..++ .+..|.|--|+
T Consensus 303 ~~~~~~~~~~~~-------~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 303 SNFYKIVFLDPE-------KGFV-LGQRGVLLRYV 329 (334)
T ss_pred cceEEEEEeCCC-------ceEE-ECCCceEEEec
Confidence 467778887665 4544 55577776654
No 431
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.92 E-value=0.0076 Score=50.00 Aligned_cols=147 Identities=17% Similarity=0.254 Sum_probs=96.9
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEE-EeeCCCeEEEEEcc
Q 037555 104 LTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFA-TGSRDKTVKIWAVE 182 (298)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~wd~~ 182 (298)
.......|-|.+.-++.++.+..+..||-.. +...... ..+....++|..++..++ .+-..+.+.+||+.
T Consensus 35 v~pi~~~w~~e~~nlavaca~tiv~~YD~ag--------q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n 105 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACANTIVIYYDKAG--------QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVN 105 (615)
T ss_pred cccceeeEecCCCceehhhhhhHHHhhhhhc--------ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhh
Confidence 3344567888777788888888999998552 2222222 345566788888776554 44567889999998
Q ss_pred CCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccce
Q 037555 183 NKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAA 262 (298)
Q Consensus 183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (298)
+..... + .+ +....-.=+.|++.. ..++.|...|.+.|++..+.+.... ...|...
T Consensus 106 ~eytqq-L-E~-gg~~s~sll~wsKg~-----~el~ig~~~gn~viynhgtsR~iiv----------------~Gkh~RR 161 (615)
T KOG2247|consen 106 SEYTQQ-L-ES-GGTSSKSLLAWSKGT-----PELVIGNNAGNIVIYNHGTSRRIIV----------------MGKHQRR 161 (615)
T ss_pred hhhHHH-H-hc-cCcchHHHHhhccCC-----ccccccccccceEEEeccchhhhhh----------------hcccccc
Confidence 644322 1 11 112222236788877 6788888899999999877643211 3338889
Q ss_pred EEEEEeecCCCCCCCcceEEEeeeCCCcE
Q 037555 263 VNRMAWKTHEKPKNSRTMQLASCGADNTV 291 (298)
Q Consensus 263 v~~~~~~~~~~~~~~~~~~l~s~~~d~~i 291 (298)
++.++|.+.+ +.+.++.|..+
T Consensus 162 gtq~av~lEd--------~vil~dcd~~L 182 (615)
T KOG2247|consen 162 GTQIAVTLED--------YVILCDCDNTL 182 (615)
T ss_pred eeEEEecccc--------eeeecCcHHHH
Confidence 9999999986 66666666543
No 432
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.92 E-value=1.4 Score=41.75 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=27.5
Q ss_pred cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC
Q 037555 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS 92 (298)
Q Consensus 54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~ 92 (298)
|-......++|+|...++|.+. ..|.|+++-...
T Consensus 33 G~~~~~~~~afD~~q~llai~t-----~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 33 GFPSTPSALAFDPTQGLLAIGT-----RTGAIKIYGQPG 66 (993)
T ss_pred CCCCCCcceeeccccceEEEEE-----ecccEEEecccc
Confidence 4445677899999999999995 489999998653
No 433
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.80 E-value=0.76 Score=35.06 Aligned_cols=64 Identities=16% Similarity=0.289 Sum_probs=45.1
Q ss_pred cCCCCEEEeEeccCCCCceEEEEEEcCCceeeec-------cc-------cccccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 037555 65 DHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR-------LQ-------SHSLTVTQIRFSHDDNLLLSVSRDRQFSVF 130 (298)
Q Consensus 65 s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~-------~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 130 (298)
..++.+|++- +.+|.+++||+.+++.+.. +. .....|..+.++.+|.-+++-+ +|....|
T Consensus 19 ~~~~~~Ll~i-----T~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y 92 (219)
T PF07569_consen 19 ECNGSYLLAI-----TSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSY 92 (219)
T ss_pred EeCCCEEEEE-----eCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEe
Confidence 3456677766 4599999999998765432 12 2456788888888887776655 5777888
Q ss_pred Eecc
Q 037555 131 AIQR 134 (298)
Q Consensus 131 d~~~ 134 (298)
+...
T Consensus 93 ~~~L 96 (219)
T PF07569_consen 93 SPDL 96 (219)
T ss_pred cccc
Confidence 7664
No 434
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.71 E-value=3.3 Score=33.96 Aligned_cols=52 Identities=12% Similarity=0.102 Sum_probs=33.4
Q ss_pred eEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeec----CCCCCceEEEEEeec
Q 037555 155 IWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILAL----PPFNSSVTALSWVGL 208 (298)
Q Consensus 155 v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~ 208 (298)
.+.|+|.|+++.|++ ...|.|++++ ..+.....+..+ .........++++|+
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccc
Confidence 478999999876664 5699999999 333321212122 234456899999995
No 435
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.71 E-value=4.4 Score=35.34 Aligned_cols=133 Identities=13% Similarity=0.126 Sum_probs=73.5
Q ss_pred eEEEEEEcCCceeeecccc--ccc----cEEEEEEc----CCCC---EEEEEeCCCeEEEEEeccCCCCccceeeeEEee
Q 037555 83 AEIWLWEVGSWKAMGRLQS--HSL----TVTQIRFS----HDDN---LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQE 149 (298)
Q Consensus 83 ~~i~vw~~~~~~~~~~~~~--~~~----~v~~~~~~----~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 149 (298)
+.|.-+|..+++.+-.++. |.. ......+. -++. .++.++.+|.+...|..+++ .+-...
T Consensus 256 ~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~-------~~W~~~ 328 (488)
T cd00216 256 DSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGK-------LISARP 328 (488)
T ss_pred eeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCc-------EeeEeE
Confidence 4799999999988766542 210 00000111 1333 57788889999999988743 222111
Q ss_pred ccCCceEEEEEccCCCEEEEe------------------eCCCeEEEEEccCCcceeeeeecCCCC------Cce--EEE
Q 037555 150 AHKRIIWSCSWNPFGHEFATG------------------SRDKTVKIWAVENKSSVKQILALPPFN------SSV--TAL 203 (298)
Q Consensus 150 ~~~~~v~~~~~~~~~~~l~~~------------------~~dg~i~~wd~~~~~~~~~~~~~~~~~------~~v--~~~ 203 (298)
.. ...+..+| ..++.+ ..+|.|.-.|+.+++.+-..... .+. .+. ..+
T Consensus 329 ~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~-~~~~~~~~g~~~~~~~~ 402 (488)
T cd00216 329 EV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREG-TIRDSWNIGFPHWGGSL 402 (488)
T ss_pred ee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCC-ccccccccCCcccCcce
Confidence 10 01122333 223322 24678888898888876533211 000 111 111
Q ss_pred EEeeccccCCccEEEEeecCCcEEEEEeeecc
Q 037555 204 SWVGLDRQKNHGFLAVGMESGVIELWSISVNR 235 (298)
Q Consensus 204 ~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 235 (298)
.. .+ .+++.++.||.|+.+|..+++
T Consensus 403 ~~--~g-----~~v~~g~~dG~l~ald~~tG~ 427 (488)
T cd00216 403 AT--AG-----NLVFAGAADGYFRAFDATTGK 427 (488)
T ss_pred Ee--cC-----CeEEEECCCCeEEEEECCCCc
Confidence 22 22 578888899999999999883
No 436
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.69 E-value=0.44 Score=36.36 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=47.5
Q ss_pred EcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEee-------ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccC
Q 037555 111 FSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQE-------AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVEN 183 (298)
Q Consensus 111 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~ 183 (298)
+..+++++++.+.+|.+++||+...+...........+. .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 344788999999999999999987542211000001111 3456788888888887666655 57788888764
Q ss_pred C
Q 037555 184 K 184 (298)
Q Consensus 184 ~ 184 (298)
.
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 3
No 437
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.68 E-value=1.6 Score=30.11 Aligned_cols=116 Identities=14% Similarity=0.069 Sum_probs=70.4
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc-ceeeeEEeeccCCceEEEEEcc-----CCCEEEEeeCCCeEEEEEcc
Q 037555 109 IRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI-DYQLIARQEAHKRIIWSCSWNP-----FGHEFATGSRDKTVKIWAVE 182 (298)
Q Consensus 109 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~~~dg~i~~wd~~ 182 (298)
-+|.....-|+.++.-|.|.|++......... ....+..+ .-...|++++-.+ ....|+.|+. ..|..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence 45555556788888899999998765432111 02223333 2456677776544 2356777664 679999999
Q ss_pred CCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEee
Q 037555 183 NKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSIS 232 (298)
Q Consensus 183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~ 232 (298)
....+. .+..+..+.++.+-..+. ....++++|+ +..|.-||..
T Consensus 82 ~N~d~F----yke~~DGvn~i~~g~~~~-~~~~l~ivGG-ncsi~Gfd~~ 125 (136)
T PF14781_consen 82 NNSDLF----YKEVPDGVNAIVIGKLGD-IPSPLVIVGG-NCSIQGFDYE 125 (136)
T ss_pred cCchhh----hhhCccceeEEEEEecCC-CCCcEEEECc-eEEEEEeCCC
Confidence 877665 233557788888765442 1224555554 5666666654
No 438
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.67 E-value=0.97 Score=33.06 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=29.1
Q ss_pred CceEEEEEeeccccCC-ccEEEEeecCCcEEEEEeee
Q 037555 198 SSVTALSWVGLDRQKN-HGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 198 ~~v~~~~~~~~~~~~~-~~~l~~g~~dg~i~vwd~~~ 233 (298)
..+.+++|+|.|...+ +.+|++-+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 4789999999886544 46788888999999998764
No 439
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.65 E-value=1.6 Score=30.07 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=49.4
Q ss_pred EEEccCCCEEEEeeCCCeEEEEEccCCcce-----eeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEee
Q 037555 158 CSWNPFGHEFATGSRDKTVKIWAVENKSSV-----KQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSIS 232 (298)
Q Consensus 158 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~ 232 (298)
-.|......|+.++.-|+|.|++....... ..+..+. ....|++++-.+-.+......|+.|+. ..|..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence 356656667888888899999987643211 1111222 456788887777543344478888875 568999998
Q ss_pred ec
Q 037555 233 VN 234 (298)
Q Consensus 233 ~~ 234 (298)
..
T Consensus 82 ~N 83 (136)
T PF14781_consen 82 NN 83 (136)
T ss_pred cC
Confidence 75
No 440
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=93.52 E-value=4.3 Score=34.63 Aligned_cols=30 Identities=13% Similarity=0.269 Sum_probs=23.7
Q ss_pred ceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555 199 SVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 233 (298)
.|.+++..+.. +.+++...+|.|.+|++..
T Consensus 191 ~I~~v~~d~~r-----~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSR-----RLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTT-----TEEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCc-----CEEEEEeCCCcEEEEEEeC
Confidence 38888888776 7999999999999999975
No 441
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.30 E-value=2.7 Score=31.65 Aligned_cols=106 Identities=15% Similarity=0.290 Sum_probs=66.2
Q ss_pred CEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC---C---eEEEE---Ecc-CC-
Q 037555 116 NLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD---K---TVKIW---AVE-NK- 184 (298)
Q Consensus 116 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g---~i~~w---d~~-~~- 184 (298)
..|+.+...+.|.+|++.... .++...+..- +.|..+.++..|+++++-=.+ . .+|+| +.. ..
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~-----~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~ 102 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEE-----CPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEEN 102 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCC-----CceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccC
Confidence 344444667889999998432 4455555544 788999999999999987432 2 55664 222 10
Q ss_pred cce--------------------eeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555 185 SSV--------------------KQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 185 ~~~--------------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
... ..+..++ ...++.+++.+|.. .-|+.|+ ++.+.+|.+...
T Consensus 103 ~~v~vRiaG~~v~~~~~~~~~~qleiiElP-l~~~p~ciaCC~~t-----G~LlVg~-~~~l~lf~l~~~ 165 (215)
T PF14761_consen 103 SPVRVRIAGHRVTPSFNESSKDQLEIIELP-LSEPPLCIACCPVT-----GNLLVGC-GNKLVLFTLKYQ 165 (215)
T ss_pred CcEEEEEcccccccCCCCccccceEEEEec-CCCCCCEEEecCCC-----CCEEEEc-CCEEEEEEEEEE
Confidence 110 1111222 34567888888876 4566665 467999988765
No 442
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.21 E-value=2.9 Score=31.95 Aligned_cols=93 Identities=11% Similarity=0.049 Sum_probs=62.1
Q ss_pred eEEEEEcCCCCEEEeEeccCCCCceEEEEEE--cCCceee-----ecccc---ccc-cEEEEEEcCCCCEEEEEeCCCeE
Q 037555 59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWE--VGSWKAM-----GRLQS---HSL-TVTQIRFSHDDNLLLSVSRDRQF 127 (298)
Q Consensus 59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~--~~~~~~~-----~~~~~---~~~-~v~~~~~~~~~~~l~~~~~dg~i 127 (298)
-+.++|+.+.+.+...- +.+-.|.-|| ..+|... ..++. ... .--.++...+|++.+++-..++|
T Consensus 160 sNgl~Wd~d~K~fY~iD----sln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V 235 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYID----SLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTV 235 (310)
T ss_pred CccccccccCcEEEEEc----cCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEE
Confidence 34678887777666552 3467787777 5555322 11111 111 11234456688899999999999
Q ss_pred EEEEeccCCCCccceeeeEEeeccCCceEEEEEcc
Q 037555 128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP 162 (298)
Q Consensus 128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 162 (298)
...|..+ ++.+.+++-....|++++|--
T Consensus 236 ~~~dp~t-------GK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 236 QKVDPTT-------GKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred EEECCCC-------CcEEEEEEcCCCceEEEEecC
Confidence 9999988 677888887888999999974
No 443
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=93.09 E-value=4.5 Score=33.60 Aligned_cols=109 Identities=11% Similarity=0.118 Sum_probs=49.9
Q ss_pred EEcCCceeeeccccccccEEE-----EEEcCCCCEEEE-EeCCCe--EEEEEeccCCCCccceeeeEEeeccC-CceEEE
Q 037555 88 WEVGSWKAMGRLQSHSLTVTQ-----IRFSHDDNLLLS-VSRDRQ--FSVFAIQRTGTGEIDYQLIARQEAHK-RIIWSC 158 (298)
Q Consensus 88 w~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~l~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~-~~v~~~ 158 (298)
-|..+|..+..+......... =+|.++|+.|+- +..||. +.+.|+.+. .+.++.... ......
T Consensus 15 ~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~--------~i~QLTdg~g~~~~g~ 86 (386)
T PF14583_consen 15 IDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATG--------EITQLTDGPGDNTFGG 86 (386)
T ss_dssp E-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT---------EEEE---SS-B-TTT-
T ss_pred eCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccC--------EEEECccCCCCCccce
Confidence 366777777666543333333 356678875554 444555 555555542 233343332 223346
Q ss_pred EEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555 159 SWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG 207 (298)
Q Consensus 159 ~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (298)
.++|+++.++-......|+-.|+++.+... +..++ ...+-...|..
T Consensus 87 ~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~-vy~~p--~~~~g~gt~v~ 132 (386)
T PF14583_consen 87 FLSPDDRALYYVKNGRSLRRVDLDTLEERV-VYEVP--DDWKGYGTWVA 132 (386)
T ss_dssp EE-TTSSEEEEEETTTEEEEEETTT--EEE-EEE----TTEEEEEEEEE
T ss_pred EEecCCCeEEEEECCCeEEEEECCcCcEEE-EEECC--cccccccceee
Confidence 677888887766666789999999876533 32332 34444456654
No 444
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=92.95 E-value=3.9 Score=32.56 Aligned_cols=119 Identities=11% Similarity=0.179 Sum_probs=72.1
Q ss_pred ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe------CCCeEEEEEeccCCCCccceeeeEE-e-eccCC
Q 037555 82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS------RDRQFSVFAIQRTGTGEIDYQLIAR-Q-EAHKR 153 (298)
Q Consensus 82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~~-~-~~~~~ 153 (298)
-..|++||..+.+-...-.+-.+.|+++.|..+.+++++|. ....+..||..... +..... . ..-.+
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~-----w~~~~~~~s~~ipg 89 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT-----WSSLGGGSSNSIPG 89 (281)
T ss_pred CCEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe-----eeecCCcccccCCC
Confidence 45699999887766555555678899999986666777664 35578888887632 222211 1 12346
Q ss_pred ceEEEEEcc-CC-CEEEEee-C--CCeEEEEEccCCcceeeeee-cCCCCCceEEEEEeec
Q 037555 154 IIWSCSWNP-FG-HEFATGS-R--DKTVKIWAVENKSSVKQILA-LPPFNSSVTALSWVGL 208 (298)
Q Consensus 154 ~v~~~~~~~-~~-~~l~~~~-~--dg~i~~wd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~ 208 (298)
+|..+.+.. +. +.++.|. . +..|..||-.....+. . .......|..+.+.|-
T Consensus 90 pv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~---~~~~~~~t~I~~l~~~~l 147 (281)
T PF12768_consen 90 PVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIG---SDILGSGTTIRGLQVLPL 147 (281)
T ss_pred cEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEecc---ccccCCCCEEEEEEEEec
Confidence 788887754 33 3444443 2 3347777655443332 2 2223567888877776
No 445
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.94 E-value=4.8 Score=33.58 Aligned_cols=100 Identities=7% Similarity=0.049 Sum_probs=50.7
Q ss_pred cEEEEEEcCCCCEEEEEe-----------CCC-eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC
Q 037555 105 TVTQIRFSHDDNLLLSVS-----------RDR-QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR 172 (298)
Q Consensus 105 ~v~~~~~~~~~~~l~~~~-----------~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 172 (298)
....++|.++|+++++-. ..+ .|.+++-..... . ......+...-.....+++.+++ |+++..
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG-~--~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~~ 89 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDG-K--YDKSNVFAEELSMVTGLAVAVGG--VYVATP 89 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCC-C--cceeEEeecCCCCccceeEecCC--EEEeCC
Confidence 456789999998777653 223 666665432211 1 11122222223345788898888 444444
Q ss_pred CCeEEEEEccCC-----cceeeeeecCC----CCCceEEEEEeecc
Q 037555 173 DKTVKIWAVENK-----SSVKQILALPP----FNSSVTALSWVGLD 209 (298)
Q Consensus 173 dg~i~~wd~~~~-----~~~~~~~~~~~----~~~~v~~~~~~~~~ 209 (298)
....++.|.... +....+..+.. +......++|.|++
T Consensus 90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG 135 (367)
T TIGR02604 90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG 135 (367)
T ss_pred CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC
Confidence 443334454321 11111112322 12446789999987
No 446
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=92.82 E-value=5.5 Score=33.96 Aligned_cols=30 Identities=13% Similarity=0.272 Sum_probs=24.4
Q ss_pred ceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 261 AAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 261 ~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
..|..++..+.. +.|++...+|.|.+|++.
T Consensus 190 ~~I~~v~~d~~r-------~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 190 PKIVQVAVDPSR-------RLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp --EEEEEEETTT-------TEEEEEESSE-EEEEEE-
T ss_pred hceeeEEecCCc-------CEEEEEeCCCcEEEEEEe
Confidence 349999999888 899999999999999985
No 447
>PHA02790 Kelch-like protein; Provisional
Probab=92.67 E-value=6.3 Score=34.27 Aligned_cols=145 Identities=11% Similarity=0.017 Sum_probs=67.3
Q ss_pred CCCEEEeEeccCCCCceEEEEEEcCCcee--eeccccccccEEEEEEcCCCCEEEEEeCCC---eEEEEEeccCCCCccc
Q 037555 67 QGKLVASSCKAQSTAAAEIWLWEVGSWKA--MGRLQSHSLTVTQIRFSHDDNLLLSVSRDR---QFSVFAIQRTGTGEID 141 (298)
Q Consensus 67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~ 141 (298)
++.+.+.||.+ ....+..||..+++- +..+.........+. -+|++.+.|+.++ .+..||..+..
T Consensus 318 ~~~iYviGG~~---~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~----- 387 (480)
T PHA02790 318 NNKLYVVGGLP---NPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQ----- 387 (480)
T ss_pred CCEEEEECCcC---CCCceEEEECCCCeEEECCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCE-----
Confidence 56777777652 234678888765432 222221111111222 2677777777653 36677766532
Q ss_pred eeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee
Q 037555 142 YQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM 221 (298)
Q Consensus 142 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~ 221 (298)
+............. +++ .-++...+.| |.+.+||.++.+-. .+..+...... .+++.. ++ .+.+.|+
T Consensus 388 W~~~~~m~~~r~~~-~~~-~~~~~IYv~G---G~~e~ydp~~~~W~-~~~~m~~~r~~-~~~~v~-~~-----~IYviGG 454 (480)
T PHA02790 388 WQFGPSTYYPHYKS-CAL-VFGRRLFLVG---RNAEFYCESSNTWT-LIDDPIYPRDN-PELIIV-DN-----KLLLIGG 454 (480)
T ss_pred EEeCCCCCCccccc-eEE-EECCEEEEEC---CceEEecCCCCcEe-EcCCCCCCccc-cEEEEE-CC-----EEEEECC
Confidence 33222221111111 222 2245555555 35778888765432 22222211111 223322 33 5667776
Q ss_pred cC-----CcEEEEEeeec
Q 037555 222 ES-----GVIELWSISVN 234 (298)
Q Consensus 222 ~d-----g~i~vwd~~~~ 234 (298)
.+ ..+..||..+.
T Consensus 455 ~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 455 FYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred cCCCcccceEEEEECCCC
Confidence 43 34566666543
No 448
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.58 E-value=0.013 Score=48.79 Aligned_cols=135 Identities=10% Similarity=0.133 Sum_probs=90.0
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEE-EEEeCCCeEEEEEeccC
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLL-LSVSRDRQFSVFAIQRT 135 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~ 135 (298)
.......|-+.+.-++.++. +..+..||-. ++...... .+.....++|..++..+ +.+-..+.+.+||+.+.
T Consensus 35 v~pi~~~w~~e~~nlavaca-----~tiv~~YD~a-gq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~e 107 (615)
T KOG2247|consen 35 VGPIIHRWRPEGHNLAVACA-----NTIVIYYDKA-GQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSE 107 (615)
T ss_pred cccceeeEecCCCceehhhh-----hhHHHhhhhh-cceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhh
Confidence 33445667777766777754 6778888854 44333333 35566778888877644 45667889999999863
Q ss_pred CCCccceeeeEEee-ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecc
Q 037555 136 GTGEIDYQLIARQE-AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLD 209 (298)
Q Consensus 136 ~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (298)
.. .++. +....-.-+.|++....++.+-..|.+.+++..+.+.+. ..-.|...++++++.+.+
T Consensus 108 yt--------qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~ii---v~Gkh~RRgtq~av~lEd 171 (615)
T KOG2247|consen 108 YT--------QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRII---VMGKHQRRGTQIAVTLED 171 (615)
T ss_pred hH--------HHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhh---hhcccccceeEEEecccc
Confidence 21 1111 111111226788888888999899999999988776554 332378889999999986
No 449
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.53 E-value=4.6 Score=34.77 Aligned_cols=84 Identities=13% Similarity=0.226 Sum_probs=54.0
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc--ceeee--EEe---------eccCCceEEEEEccCC---CEE
Q 037555 104 LTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI--DYQLI--ARQ---------EAHKRIIWSCSWNPFG---HEF 167 (298)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~--~~~---------~~~~~~v~~~~~~~~~---~~l 167 (298)
-.|..+..++.|..++-++.+|.+.++=.+.-+.... +++.. ... ....-.+..++|+|+. ..|
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 4577888899999999999999877664332211100 01111 100 0112246678899965 678
Q ss_pred EEeeCCCeEEEEEccCCcce
Q 037555 168 ATGSRDKTVKIWAVENKSSV 187 (298)
Q Consensus 168 ~~~~~dg~i~~wd~~~~~~~ 187 (298)
..-+.|..||+||+.....+
T Consensus 184 ~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEEecCcEEEEEecCCcchh
Confidence 88889999999999875544
No 450
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.75 E-value=8 Score=33.39 Aligned_cols=79 Identities=14% Similarity=0.140 Sum_probs=43.2
Q ss_pred CceEEEEEccCCCEEEEeeCCCeEEEEEcc---------CCcceeeeeecC--------CCCCceEEEEEeeccccCCcc
Q 037555 153 RIIWSCSWNPFGHEFATGSRDKTVKIWAVE---------NKSSVKQILALP--------PFNSSVTALSWVGLDRQKNHG 215 (298)
Q Consensus 153 ~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~---------~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~~~ 215 (298)
-.|..+..++.|..++-.+.+|.+.++=.+ +++.....+++. ...-.+..++|+|++... .
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D--~ 181 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILD--P 181 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCC--c
Confidence 346677788888888888888866554311 222211111111 011234566777765211 3
Q ss_pred EEEEeecCCcEEEEEeee
Q 037555 216 FLAVGMESGVIELWSISV 233 (298)
Q Consensus 216 ~l~~g~~dg~i~vwd~~~ 233 (298)
.|..-..|..|++||+..
T Consensus 182 hL~iL~sdnviRiy~lS~ 199 (741)
T KOG4460|consen 182 HLVLLTSDNVIRIYSLSE 199 (741)
T ss_pred eEEEEecCcEEEEEecCC
Confidence 555556677777777654
No 451
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.46 E-value=2 Score=36.07 Aligned_cols=166 Identities=14% Similarity=0.082 Sum_probs=96.0
Q ss_pred eccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceee--ecccccc----ccEE-EEEEcCCCCEEEEEeCC
Q 037555 52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAM--GRLQSHS----LTVT-QIRFSHDDNLLLSVSRD 124 (298)
Q Consensus 52 ~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~--~~~~~~~----~~v~-~~~~~~~~~~l~~~~~d 124 (298)
+..-...|..+-..|+|+.|..-. ..++.++++.+.... +...... ..|+ .+..-..|.-+++++.|
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~------g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~d 289 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRT------GSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHED 289 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEec------CCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCC
Confidence 334445677888899999887763 357888887643221 1111111 1122 12222356678888889
Q ss_pred CeEEEE-EeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEE
Q 037555 125 RQFSVF-AIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTAL 203 (298)
Q Consensus 125 g~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~ 203 (298)
|.|.-| |++...... ...++.++-...++..+.-....+-|++-+..|++.++.....+.+. ++..-..+.-+
T Consensus 290 G~vsQWFdvr~~~~p~--l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL----~~~~~~~~~~~ 363 (733)
T COG4590 290 GLVSQWFDVRRDGQPH--LNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL----FERAYQAPQLV 363 (733)
T ss_pred CceeeeeeeecCCCCc--ceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee----hhhhhcCccee
Confidence 988876 555433211 23333333333444444333344567777888888887665544332 11222356678
Q ss_pred EEeeccccCCccEEEEeecCCcEEEEEeeecc
Q 037555 204 SWVGLDRQKNHGFLAVGMESGVIELWSISVNR 235 (298)
Q Consensus 204 ~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 235 (298)
+++|.+ .++++- +.|.|+++.+++..
T Consensus 364 ~~Sp~~-----~~Ll~e-~~gki~~~~l~Nr~ 389 (733)
T COG4590 364 AMSPNQ-----AYLLSE-DQGKIRLAQLENRN 389 (733)
T ss_pred eeCccc-----chheee-cCCceEEEEecCCC
Confidence 999988 677664 45789999988764
No 452
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=91.32 E-value=1.2 Score=23.32 Aligned_cols=32 Identities=6% Similarity=0.133 Sum_probs=24.2
Q ss_pred CCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc
Q 037555 66 HQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS 101 (298)
Q Consensus 66 ~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~ 101 (298)
|+++.|.++.. .++.|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~----~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNS----GSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeC----CCCEEEEEECCCCeEEEEEEC
Confidence 57777777753 478999999988887776654
No 453
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=91.09 E-value=8.1 Score=32.20 Aligned_cols=201 Identities=15% Similarity=0.157 Sum_probs=101.6
Q ss_pred CCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEc----CCCCE--EEEEe-CC---CeEEEEEeccCC
Q 037555 67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFS----HDDNL--LLSVS-RD---RQFSVFAIQRTG 136 (298)
Q Consensus 67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~--l~~~~-~d---g~i~iwd~~~~~ 136 (298)
...+++... .++-+.+||++ |+.++.+.. +.+..+..- -.|+. |++++ .+ ..|++|.+....
T Consensus 67 ~kSlIigTd-----K~~GL~VYdL~-Gk~lq~~~~--Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~ 138 (381)
T PF02333_consen 67 AKSLIIGTD-----KKGGLYVYDLD-GKELQSLPV--GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDT 138 (381)
T ss_dssp GG-EEEEEE-----TTTEEEEEETT-S-EEEEE-S--S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTT
T ss_pred ccceEEEEe-----CCCCEEEEcCC-CcEEEeecC--CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCC
Confidence 344666663 36779999997 666666542 223333221 13432 34443 32 479999887422
Q ss_pred CCccceeeeE----EeeccCCceEEEEEc--c-CCC-EEEEeeCCCeEEEEEccC---Ccc-eeeeeecCCCCCceEEEE
Q 037555 137 TGEIDYQLIA----RQEAHKRIIWSCSWN--P-FGH-EFATGSRDKTVKIWAVEN---KSS-VKQILALPPFNSSVTALS 204 (298)
Q Consensus 137 ~~~~~~~~~~----~~~~~~~~v~~~~~~--~-~~~-~l~~~~~dg~i~~wd~~~---~~~-~~~~~~~~~~~~~v~~~~ 204 (298)
. . ...+. .+......++.+|+- + ++. +.++...+|.+..|-+.. +.. ...++.+. ..+.+..+.
T Consensus 139 g-~--L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~-~~sQ~EGCV 214 (381)
T PF02333_consen 139 G-E--LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK-VGSQPEGCV 214 (381)
T ss_dssp T-E--EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEE
T ss_pred C-c--ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec-CCCcceEEE
Confidence 1 0 11110 011122346777764 3 343 556677889998888753 211 12233443 345778888
Q ss_pred EeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEe
Q 037555 205 WVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLAS 284 (298)
Q Consensus 205 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s 284 (298)
..... ..|..+-++.-|.-|+.+....... ..+.... -......|-.|+.-.... ..+.+|+|
T Consensus 215 VDDe~-----g~LYvgEE~~GIW~y~Aep~~~~~~--------~~v~~~~-g~~l~aDvEGlaly~~~~---g~gYLivS 277 (381)
T PF02333_consen 215 VDDET-----GRLYVGEEDVGIWRYDAEPEGGNDR--------TLVASAD-GDGLVADVEGLALYYGSD---GKGYLIVS 277 (381)
T ss_dssp EETTT-----TEEEEEETTTEEEEEESSCCC-S----------EEEEEBS-SSSB-S-EEEEEEEE-CC---C-EEEEEE
T ss_pred Eeccc-----CCEEEecCccEEEEEecCCCCCCcc--------eeeeccc-ccccccCccceEEEecCC---CCeEEEEE
Confidence 87776 6899998887666666553211110 2222211 122456777888765320 12255666
Q ss_pred eeCCCcEEEeEe
Q 037555 285 CGADNTVRVFQV 296 (298)
Q Consensus 285 ~~~d~~i~iw~~ 296 (298)
.-.+++..+|+-
T Consensus 278 sQG~~sf~Vy~r 289 (381)
T PF02333_consen 278 SQGDNSFAVYDR 289 (381)
T ss_dssp EGGGTEEEEEES
T ss_pred cCCCCeEEEEec
Confidence 667788888874
No 454
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=90.94 E-value=3.6 Score=36.41 Aligned_cols=77 Identities=14% Similarity=0.136 Sum_probs=43.8
Q ss_pred CCCCEEEEEeCCCeEEEEEeccCCCCccceeeeE-------------------EeeccCCceEEEEEcc----CCCEEEE
Q 037555 113 HDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIA-------------------RQEAHKRIIWSCSWNP----FGHEFAT 169 (298)
Q Consensus 113 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------------------~~~~~~~~v~~~~~~~----~~~~l~~ 169 (298)
++...++.+..||.+................... ........+..++++. +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667888888999998888765210000000000 0001123455566665 6789999
Q ss_pred eeCCCeEEEEEccCCcceee
Q 037555 170 GSRDKTVKIWAVENKSSVKQ 189 (298)
Q Consensus 170 ~~~dg~i~~wd~~~~~~~~~ 189 (298)
.+.|+++|+||+.++.++..
T Consensus 236 l~~D~~LRiW~l~t~~~~~~ 255 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLAT 255 (547)
T ss_dssp EETTSEEEEEETTTTCEEEE
T ss_pred EeCCCeEEEEECCCCeEEEE
Confidence 99999999999999988553
No 455
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=90.42 E-value=7.7 Score=30.85 Aligned_cols=155 Identities=14% Similarity=0.104 Sum_probs=93.7
Q ss_pred CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceee---eccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEe
Q 037555 56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAM---GRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAI 132 (298)
Q Consensus 56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 132 (298)
.+-+..+.++.+ +...+ ..+.-++|.|+.+.... ..+. -.+-..++.. .|++..++..|.-+.+.|+
T Consensus 86 ~~l~~Dv~vse~--yvyva-----d~ssGL~IvDIS~P~sP~~~~~ln-t~gyaygv~v--sGn~aYVadlddgfLivdv 155 (370)
T COG5276 86 RDLFADVRVSEE--YVYVA-----DWSSGLRIVDISTPDSPTLIGFLN-TDGYAYGVYV--SGNYAYVADLDDGFLIVDV 155 (370)
T ss_pred hhhhheeEeccc--EEEEE-----cCCCceEEEeccCCCCcceecccc-CCceEEEEEe--cCCEEEEeeccCcEEEEEC
Confidence 345566677644 44444 33566999998765432 2222 2233444444 6888888887767778999
Q ss_pred ccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccC
Q 037555 133 QRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQK 212 (298)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 212 (298)
..++.. .+..........-..++.+ |++-+.+..|+-+.+.|+........+.... ....+.++..+++.
T Consensus 156 sdpssP----~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr--- 225 (370)
T COG5276 156 SDPSSP----QLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNR--- 225 (370)
T ss_pred CCCCCc----eeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCe---
Confidence 876542 2233333334444566665 7888888889999999998876655333332 23367788777764
Q ss_pred CccEEEEeecCCcEEEEEeeec
Q 037555 213 NHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 213 ~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
-+++.. ..| +.+-|....
T Consensus 226 --~y~vvy-~eg-vlivd~s~~ 243 (370)
T COG5276 226 --AYLVVY-DEG-VLIVDVSGP 243 (370)
T ss_pred --eEEEEc-ccc-eEEEecCCC
Confidence 344433 233 555565544
No 456
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=90.33 E-value=1.5 Score=22.60 Aligned_cols=26 Identities=15% Similarity=0.080 Sum_probs=18.7
Q ss_pred EeccCCCceEEEEEcCCCCEEEeEec
Q 037555 51 KLYGHGNELFSLCCDHQGKLVASSCK 76 (298)
Q Consensus 51 ~~~~h~~~v~~~~~s~~~~~l~~~~~ 76 (298)
.+......-....|+|||+.|+-++.
T Consensus 3 ~~t~~~~~~~~p~~SpDGk~i~f~s~ 28 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPDGKYIYFTSN 28 (39)
T ss_dssp EES-SSSSEEEEEE-TTSSEEEEEEE
T ss_pred CcccCCccccCEEEecCCCEEEEEec
Confidence 34445667789999999999988875
No 457
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=89.89 E-value=5.2 Score=31.06 Aligned_cols=121 Identities=12% Similarity=0.190 Sum_probs=63.7
Q ss_pred EEcCCCCEEEeEeccCCCCceEEEEEEcCC----ceeee---ccccccccEEEEEEcCCCCEEEEEeCCCe-EEEEEecc
Q 037555 63 CCDHQGKLVASSCKAQSTAAAEIWLWEVGS----WKAMG---RLQSHSLTVTQIRFSHDDNLLLSVSRDRQ-FSVFAIQR 134 (298)
Q Consensus 63 ~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~----~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~ 134 (298)
.+-++|++|.+|+... ....+++++... ..... .+. ....=-...--|||+.|+.|+.... ..+|....
T Consensus 73 ~~L~dG~ll~tGG~~~--G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~ 149 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDND--GNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKG 149 (243)
T ss_pred CCCCCCCEEEeCCCCc--cccceEEEecCCCCCCCCceECccccc-CCCccccceECCCCCEEEEeCcCCCcccccCCcc
Confidence 4668999999997632 245688888644 11111 111 1222223445569999998887643 33443322
Q ss_pred CCCCccceeeeEEee--ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCccee
Q 037555 135 TGTGEIDYQLIARQE--AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVK 188 (298)
Q Consensus 135 ~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~ 188 (298)
..........+.... ....---.+...|+|+.|+.+..+. .+||..+.+.+.
T Consensus 150 ~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~ 203 (243)
T PF07250_consen 150 PGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVR 203 (243)
T ss_pred CCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEe
Confidence 111110011111110 0111223466789999999888654 566888776655
No 458
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=89.68 E-value=17 Score=33.73 Aligned_cols=82 Identities=15% Similarity=0.195 Sum_probs=49.9
Q ss_pred CceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeec----cCCcccceEEEEEeecCCC
Q 037555 198 SSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFD----PFACHVAAVNRMAWKTHEK 273 (298)
Q Consensus 198 ~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~ 273 (298)
..|.++.....+ .+++....||+|.++|..+.+..............+..+. .+. .-.++..++|||.+
T Consensus 260 ~~V~si~~~~~~-----~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp-~~~~~~~vafSPt~- 332 (753)
T PF11635_consen 260 KRVVSITSPELD-----IVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFP-CIQPPLHVAFSPTM- 332 (753)
T ss_pred CeEEEEEecccC-----cEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccc-cCCCCceEEECccc-
Confidence 446666666665 6889999999999999987654433200000111111111 011 12256679999999
Q ss_pred CCCCcceEEEeeeCCCcEE
Q 037555 274 PKNSRTMQLASCGADNTVR 292 (298)
Q Consensus 274 ~~~~~~~~l~s~~~d~~i~ 292 (298)
..++.-..+|.+.
T Consensus 333 ------c~~v~~~~~~~~~ 345 (753)
T PF11635_consen 333 ------CSLVQIDEDGKTK 345 (753)
T ss_pred ------ceEEEEecCCCce
Confidence 7888888888855
No 459
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=88.10 E-value=24 Score=33.42 Aligned_cols=159 Identities=14% Similarity=0.102 Sum_probs=83.4
Q ss_pred ceEEEEEcCCCC--EEEeEeccCC------CCceEEEEEEcC-Cceeeeccc--cccccEEEEEEcCCCCEEEEEeCCCe
Q 037555 58 ELFSLCCDHQGK--LVASSCKAQS------TAAAEIWLWEVG-SWKAMGRLQ--SHSLTVTQIRFSHDDNLLLSVSRDRQ 126 (298)
Q Consensus 58 ~v~~~~~s~~~~--~l~~~~~~~~------~~d~~i~vw~~~-~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~ 126 (298)
.|.++.|+.... ++++++.... -.+|.++.|++- .++.+.-+. .-.+.| .+..|-..++++ +....
T Consensus 879 ~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~~~~v--~Ai~~f~~~~La-gvG~~ 955 (1205)
T KOG1898|consen 879 SVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEIPGPV--GAICPFQGRVLA-GVGRF 955 (1205)
T ss_pred heeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCCCccc--eEEeccCCEEEE-ecccE
Confidence 466666654322 4444433111 124557777653 333222221 123334 445665554443 44578
Q ss_pred EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCc-ceeeeeecCCCCCceEEEEE
Q 037555 127 FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKS-SVKQILALPPFNSSVTALSW 205 (298)
Q Consensus 127 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~~~~v~~~~~ 205 (298)
+++||+...+. .....++.....|..+.+. +.++++|...-.+.++..+... .+..+ .-...+..|+++.+
T Consensus 956 l~~YdlG~K~l-----LRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~~n~l~~f-adD~~pR~Vt~~~~ 1027 (1205)
T KOG1898|consen 956 LRLYDLGKKKL-----LRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRREDNQLIVF-ADDPVPRHVTALEL 1027 (1205)
T ss_pred EEEeeCChHHH-----HhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecCCCeEEEE-eCCCccceeeEEEE
Confidence 99999976321 1111222234567777665 6678888765556655444322 22222 22234556777777
Q ss_pred eeccccCCccEEEEeecCCcEEEEEeee
Q 037555 206 VGLDRQKNHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 206 ~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 233 (298)
-..+ .++.+..-|.+.+..+..
T Consensus 1028 lD~~------tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1028 LDYD------TVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred ecCC------ceeeccccCcEEEEECCC
Confidence 6654 688887778887776653
No 460
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.05 E-value=16 Score=31.39 Aligned_cols=61 Identities=13% Similarity=0.058 Sum_probs=40.8
Q ss_pred EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee--eeccc-----cccccEEEEEEcCCC
Q 037555 50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA--MGRLQ-----SHSLTVTQIRFSHDD 115 (298)
Q Consensus 50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~--~~~~~-----~~~~~v~~~~~~~~~ 115 (298)
..+...-.....|+|.|+|++|++-- ..|.|++++..++.. +..+. ........|+++|+-
T Consensus 23 ~~va~GL~~Pw~maflPDG~llVtER-----~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 23 KVLLSGLNKPWALLWGPDNQLWVTER-----ATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EEEECCCCCceEEEEcCCCeEEEEEe-----cCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 34444456788999999998888762 258999998654432 21111 135678999999874
No 461
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=87.70 E-value=16 Score=30.91 Aligned_cols=151 Identities=13% Similarity=0.125 Sum_probs=79.2
Q ss_pred eEEEEEcCCCCEEEeEeccCCCCceEEEE-EEcCCcee--eeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccC
Q 037555 59 LFSLCCDHQGKLVASSCKAQSTAAAEIWL-WEVGSWKA--MGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRT 135 (298)
Q Consensus 59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~v-w~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 135 (298)
...+..++++.+++.+. .|.+.. ||- +.. ...-......+..+.+.+++.+++++ ..|.+.. ....+
T Consensus 241 f~~v~~~~dG~~~~vg~------~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G 310 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSS------RGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTG 310 (398)
T ss_pred eeeEEEcCCCCEEEEEC------CccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCC
Confidence 44556678888888873 344433 433 221 11112234568899999998877665 4566543 22222
Q ss_pred CCCccceeeeEEeec--cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCC
Q 037555 136 GTGEIDYQLIARQEA--HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKN 213 (298)
Q Consensus 136 ~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (298)
.... ......... ....+..+.|.+++..+++ +..|.+... ...++...............+.+.|.+.+
T Consensus 311 ~~~~--~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~---- 382 (398)
T PLN00033 311 LTEE--DFDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDK---- 382 (398)
T ss_pred Cccc--ccceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCC----
Confidence 1100 001111111 2235888999877765555 556766554 34444433211112334567889987765
Q ss_pred ccEEEEeecCCcEEEE
Q 037555 214 HGFLAVGMESGVIELW 229 (298)
Q Consensus 214 ~~~l~~g~~dg~i~vw 229 (298)
..+++ +.+|.|.-|
T Consensus 383 -~g~~~-G~~G~il~~ 396 (398)
T PLN00033 383 -KGFVL-GNDGVLLRY 396 (398)
T ss_pred -ceEEE-eCCcEEEEe
Confidence 34444 467776544
No 462
>PLN02153 epithiospecifier protein
Probab=87.69 E-value=14 Score=30.37 Aligned_cols=28 Identities=7% Similarity=0.104 Sum_probs=17.0
Q ss_pred CCCEEEeEeccCCCCceEEEEEEcCCce
Q 037555 67 QGKLVASSCKAQSTAAAEIWLWEVGSWK 94 (298)
Q Consensus 67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~ 94 (298)
++++++.|+.+....-..+.+||+.+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNE 112 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCE
Confidence 4667777765322222468889987654
No 463
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=87.49 E-value=17 Score=30.90 Aligned_cols=162 Identities=10% Similarity=0.086 Sum_probs=83.1
Q ss_pred EEEEcCCCCEEEeEeccCCCC------ceEEEEEEcCCceee--eccccccc--cEEEEEEcCCCCEEEEEeCC----Ce
Q 037555 61 SLCCDHQGKLVASSCKAQSTA------AAEIWLWEVGSWKAM--GRLQSHSL--TVTQIRFSHDDNLLLSVSRD----RQ 126 (298)
Q Consensus 61 ~~~~s~~~~~l~~~~~~~~~~------d~~i~vw~~~~~~~~--~~~~~~~~--~v~~~~~~~~~~~l~~~~~d----g~ 126 (298)
.+.|.++++.|+....+.... ...|+.|.+.+.... ..+..... ....+..++|+++++..... ..
T Consensus 174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~ 253 (414)
T PF02897_consen 174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESE 253 (414)
T ss_dssp EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEE
T ss_pred eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCe
Confidence 389999999887776644333 667999998766432 33443222 25688899999987654332 34
Q ss_pred EEEEEeccCCCCccceeeeEEeeccCCce-EEEEEccCCCEEEEee---CCCeEEEEEccCCcceeeeeecCCCCC--ce
Q 037555 127 FSVFAIQRTGTGEIDYQLIARQEAHKRII-WSCSWNPFGHEFATGS---RDKTVKIWAVENKSSVKQILALPPFNS--SV 200 (298)
Q Consensus 127 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~---~dg~i~~wd~~~~~~~~~~~~~~~~~~--~v 200 (298)
+.+.++...... ......+......+ ..+... .+.+++... ..+.|...++...........+..+.. .+
T Consensus 254 v~~~d~~~~~~~---~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l 329 (414)
T PF02897_consen 254 VYLLDLDDGGSP---DAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSL 329 (414)
T ss_dssp EEEEECCCTTTS---S-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEE
T ss_pred EEEEeccccCCC---cCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeE
Confidence 666676653100 11122222233333 334333 333333332 246777778877653111112222333 45
Q ss_pred EEEEEeeccccCCccEEEEeecCC--cEEEEEee
Q 037555 201 TALSWVGLDRQKNHGFLAVGMESG--VIELWSIS 232 (298)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~g~~dg--~i~vwd~~ 232 (298)
..+....+ .+++....++ .|+++++.
T Consensus 330 ~~~~~~~~------~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 330 EDVSLFKD------YLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEEETT------EEEEEEEETTEEEEEEEETT
T ss_pred EEEEEECC------EEEEEEEECCccEEEEEECC
Confidence 55554432 3555555555 57777777
No 464
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=86.79 E-value=19 Score=30.95 Aligned_cols=60 Identities=8% Similarity=0.030 Sum_probs=36.3
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEee-ccCCceEEEEEccCC
Q 037555 104 LTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQE-AHKRIIWSCSWNPFG 164 (298)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~ 164 (298)
.....++|.||+++|++--..|.|++++......... ........ ........|+++|+-
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~-~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVV-FTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeee-ecCCceeccCCCCceeeEEECCCc
Confidence 3467899999998777665579999987543221100 00001111 125678999999874
No 465
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=86.76 E-value=12 Score=28.37 Aligned_cols=140 Identities=9% Similarity=0.152 Sum_probs=76.7
Q ss_pred ceEEEEEEcC--CceeeeccccccccEEEEEEcCCCCEEEEEeCC---C---eEEEE-EeccC--CCCcc----------
Q 037555 82 AAEIWLWEVG--SWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD---R---QFSVF-AIQRT--GTGEI---------- 140 (298)
Q Consensus 82 d~~i~vw~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g---~i~iw-d~~~~--~~~~~---------- 140 (298)
...|.+|++. ..+....|.. -+.|..+.++..|+++++--.+ . .+|+| +.+.. .....
T Consensus 37 g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRiaG~~v~ 115 (215)
T PF14761_consen 37 GCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRIAGHRVT 115 (215)
T ss_pred CCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEEcccccc
Confidence 5789999987 3344555653 4789999999999999996432 2 55655 22221 10000
Q ss_pred ------cee-eeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcc-ee--eeeecC------CCCCceEEEE
Q 037555 141 ------DYQ-LIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSS-VK--QILALP------PFNSSVTALS 204 (298)
Q Consensus 141 ------~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-~~--~~~~~~------~~~~~v~~~~ 204 (298)
... ......+-..++.+++..|....|++|+ ++++.+|.+..... .. .+..+. ...-.+..++
T Consensus 116 ~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~~p~~v~ 194 (215)
T PF14761_consen 116 PSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDNFKPTQVA 194 (215)
T ss_pred cCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheecCceEEEEE
Confidence 000 0011112345677888888554555555 46788888765433 11 111221 0112245566
Q ss_pred EeeccccCCccEEEEeecCCcEEEEEe
Q 037555 205 WVGLDRQKNHGFLAVGMESGVIELWSI 231 (298)
Q Consensus 205 ~~~~~~~~~~~~l~~g~~dg~i~vwd~ 231 (298)
+.. .++|..+ +-.+++..+
T Consensus 195 ic~-------~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 195 ICE-------GYIAVMS-DLEVLVLKL 213 (215)
T ss_pred EEe-------eEEEEec-CCEEEEEEE
Confidence 655 4666655 455666655
No 466
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.74 E-value=24 Score=32.03 Aligned_cols=153 Identities=18% Similarity=0.145 Sum_probs=77.0
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeec--c--ccccccEEEEEEcCCCCEEEEEeCCCeEE-EEE
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR--L--QSHSLTVTQIRFSHDDNLLLSVSRDRQFS-VFA 131 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~--~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~-iwd 131 (298)
.++-.+.|+.+..+|+.. .+|+++||++. |+.+.. + ......|..+.+..+|-.+.+ .+|.+. +-+
T Consensus 84 ~~lI~mgWs~~eeLI~v~------k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt--~~g~v~~i~~ 154 (829)
T KOG2280|consen 84 GELIGMGWSDDEELICVQ------KDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGVAVLT--VSGQVILING 154 (829)
T ss_pred CCeeeecccCCceEEEEe------ccceEEEeecc-hhhhcccccccccccCceeEEEEecCceEEEe--cCCcEEEEcC
Confidence 378899999887777765 58999999986 443333 1 223344666666656643333 334443 333
Q ss_pred eccCCCCccceeeeEEeec---cCCceEEEEEccCC---CEEEEee-CCCeEEEEEccCCcceeeeeecCCCCCceEEEE
Q 037555 132 IQRTGTGEIDYQLIARQEA---HKRIIWSCSWNPFG---HEFATGS-RDKTVKIWAVENKSSVKQILALPPFNSSVTALS 204 (298)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~---~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~ 204 (298)
..... ...... ...+-.+-...+++ ..++-.. ..+ ..++-........ ..+....+.+..+.
T Consensus 155 ~~~~~--------~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~--~~~~~~~~~~~ki~ 223 (829)
T KOG2280|consen 155 VEEPK--------LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQL--HALSWPNSSVVKIS 223 (829)
T ss_pred CCcch--------hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccc--cccCCCCceEEEEE
Confidence 33211 111111 11111222222221 1111111 111 1122222211111 12222235677889
Q ss_pred EeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555 205 WVGLDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 205 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
.+|+. .+|+--..+|.|.+-+....
T Consensus 224 VS~n~-----~~laLyt~~G~i~~vs~D~~ 248 (829)
T KOG2280|consen 224 VSPNR-----RFLALYTETGKIWVVSIDLS 248 (829)
T ss_pred EcCCc-----ceEEEEecCCcEEEEecchh
Confidence 99888 78999899999998887654
No 467
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=86.40 E-value=28 Score=32.45 Aligned_cols=167 Identities=10% Similarity=0.109 Sum_probs=96.5
Q ss_pred cCCCceEEEEEc---C----CCCEEEeEeccCCCCceEEEEEEcCCc---------------eeeeccc---cccccEEE
Q 037555 54 GHGNELFSLCCD---H----QGKLVASSCKAQSTAAAEIWLWEVGSW---------------KAMGRLQ---SHSLTVTQ 108 (298)
Q Consensus 54 ~h~~~v~~~~~s---~----~~~~l~~~~~~~~~~d~~i~vw~~~~~---------------~~~~~~~---~~~~~v~~ 108 (298)
.-..+|..|+|. . ..+.|++=. ...+.|+...-. .++..+. ....+..+
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt------~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aD 150 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT------ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHAD 150 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc------CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccce
Confidence 456789999998 2 123555441 456777772111 1222222 12346778
Q ss_pred EEEcC-CCCEEEEEeCCCeEEEEEeccCCCCc-cceeeeEEeec-------cCCceEEEEEccCCCEEEEeeCCCeEEEE
Q 037555 109 IRFSH-DDNLLLSVSRDRQFSVFAIQRTGTGE-IDYQLIARQEA-------HKRIIWSCSWNPFGHEFATGSRDKTVKIW 179 (298)
Q Consensus 109 ~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 179 (298)
++|+| +...||.....|...||++....... ..........+ ....-..+.|.++.+.|++++. ..+.++
T Consensus 151 v~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~ 229 (765)
T PF10214_consen 151 VAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLI 229 (765)
T ss_pred EEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEE
Confidence 99999 55689999999999999992211110 00111100001 0122347889888888888875 568999
Q ss_pred EccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555 180 AVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 180 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 233 (298)
|+++......+ ........|..+.-+|... +.-+++|. ..|...++..
T Consensus 230 d~~~~~~~~~l-~~~~~~~~IlDv~~~~~~~--~~~FiLTs---~eiiw~~~~~ 277 (765)
T PF10214_consen 230 DFESNWQTEYL-VTAKTWSWILDVKRSPDNP--SHVFILTS---KEIIWLDVKS 277 (765)
T ss_pred ECCCCCccchh-ccCCChhheeeEEecCCcc--ceEEEEec---CeEEEEEccC
Confidence 99877653312 2223456788888888742 11233332 5677777766
No 468
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=86.26 E-value=23 Score=31.31 Aligned_cols=53 Identities=17% Similarity=0.141 Sum_probs=36.0
Q ss_pred EEEEEEcCCceeeecccccccc---------EEEEEEcCCCC---EEEEEeCCCeEEEEEeccCC
Q 037555 84 EIWLWEVGSWKAMGRLQSHSLT---------VTQIRFSHDDN---LLLSVSRDRQFSVFAIQRTG 136 (298)
Q Consensus 84 ~i~vw~~~~~~~~~~~~~~~~~---------v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~ 136 (298)
.|.-.|+++|+..-.++..... ..-+.+..+|+ .++.+.++|.+.+.|..+++
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence 6777899999887666532211 12222334665 77889999999999988754
No 469
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=86.25 E-value=17 Score=29.78 Aligned_cols=114 Identities=14% Similarity=0.110 Sum_probs=64.5
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCe------EEEEEeccCCCCcccee--eeEEeeccCC--------ceEEEEEccCCCE
Q 037555 103 SLTVTQIRFSHDDNLLLSVSRDRQ------FSVFAIQRTGTGEIDYQ--LIARQEAHKR--------IIWSCSWNPFGHE 166 (298)
Q Consensus 103 ~~~v~~~~~~~~~~~l~~~~~dg~------i~iwd~~~~~~~~~~~~--~~~~~~~~~~--------~v~~~~~~~~~~~ 166 (298)
-+.++.+.+.+++..+++.+.+|. +..+++........... ....+....+ -.-+|++.+++.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 356788999876667777787777 66666554111100011 1111111111 2346778667777
Q ss_pred EEEeeCC------CeEEEEEccCCcceeeee---ec---------CCCCCceEEEEEeeccccCCccEEEEeec
Q 037555 167 FATGSRD------KTVKIWAVENKSSVKQIL---AL---------PPFNSSVTALSWVGLDRQKNHGFLAVGME 222 (298)
Q Consensus 167 l~~~~~d------g~i~~wd~~~~~~~~~~~---~~---------~~~~~~v~~~~~~~~~~~~~~~~l~~g~~ 222 (298)
+++--.+ ..|+.++.. ++....+. .+ ...+....+|+++|++ ..|+++.+
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG-----~~l~~~~E 166 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDG-----RTLFAAME 166 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCC-----CEEEEEEC
Confidence 7766666 778888866 44433221 01 1134568899999998 55666544
No 470
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.10 E-value=4.9 Score=35.61 Aligned_cols=74 Identities=12% Similarity=0.109 Sum_probs=39.9
Q ss_pred cCCCEEEEeeCCCeEEEEEccC----Ccceeee-----------eecC--------CCCCceEEEEEeeccccCCccEEE
Q 037555 162 PFGHEFATGSRDKTVKIWAVEN----KSSVKQI-----------LALP--------PFNSSVTALSWVGLDRQKNHGFLA 218 (298)
Q Consensus 162 ~~~~~l~~~~~dg~i~~wd~~~----~~~~~~~-----------~~~~--------~~~~~v~~~~~~~~~~~~~~~~l~ 218 (298)
++...++.+..||.+....... +...... ..+- ........++++.... .+..+++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ 234 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEI-NDDTFLF 234 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE------ETTTEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEeccee-CCCCEEE
Confidence 3667788888899888777654 1111100 0000 0123345566665111 0117999
Q ss_pred EeecCCcEEEEEeeeccc
Q 037555 219 VGMESGVIELWSISVNRT 236 (298)
Q Consensus 219 ~g~~dg~i~vwd~~~~~~ 236 (298)
+-+.|+.+|+||+.++..
T Consensus 235 tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 235 TLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EEETTSEEEEEETTTTCE
T ss_pred EEeCCCeEEEEECCCCeE
Confidence 999999999999998754
No 471
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=85.24 E-value=19 Score=29.38 Aligned_cols=112 Identities=6% Similarity=0.076 Sum_probs=53.3
Q ss_pred CCCEEEeEeccCCCCceEEEEEEcCCcee---eeccccccccE--EEEEEcCCCCEEEEEeC-----CCeEEEEEeccCC
Q 037555 67 QGKLVASSCKAQSTAAAEIWLWEVGSWKA---MGRLQSHSLTV--TQIRFSHDDNLLLSVSR-----DRQFSVFAIQRTG 136 (298)
Q Consensus 67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~---~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~ 136 (298)
++.+++.|+.+....-..+..+|+.+.+. ...+..-..+. .+++. -++++.+.|+. ...+..||+.+..
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~ 150 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE 150 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence 56677777653222234677777765542 11111111111 12222 25666666664 2357777876533
Q ss_pred CCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCC----eEEEEEccCCc
Q 037555 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDK----TVKIWAVENKS 185 (298)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~~wd~~~~~ 185 (298)
+..+..+.... .....+...++.+++.|+.++ .+.+||.++.+
T Consensus 151 -----W~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 151 -----WFELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred -----eeECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 33332221111 111222233566777777653 25678887654
No 472
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=84.86 E-value=35 Score=32.16 Aligned_cols=122 Identities=11% Similarity=0.105 Sum_probs=68.4
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCC------CEEEEeeCCCeEE
Q 037555 104 LTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG------HEFATGSRDKTVK 177 (298)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~~~dg~i~ 177 (298)
..++....+.+...++.++.++.+...++.... -...........|.|+.++|-+ +.+++|..+..+.
T Consensus 488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~------l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~ 561 (1096)
T KOG1897|consen 488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGG------LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISM 561 (1096)
T ss_pred CceEEEEEeecceEEEEecCccEEEEEEeeccc------eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEE
Confidence 344444555556677777777777777776532 0111122345789999999842 3788888877655
Q ss_pred EEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555 178 IWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 178 ~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
+.-............+. ...-.+++-+...+ .+..+|+++..||.+..|.+...
T Consensus 562 ~l~~~pd~~~~~~~~l~-~~~iPRSIl~~~~e--~d~~yLlvalgdG~l~~fv~d~~ 615 (1096)
T KOG1897|consen 562 ILTFLPDLILITHEQLS-GEIIPRSILLTTFE--GDIHYLLVALGDGALLYFVLDIN 615 (1096)
T ss_pred EEEECCCcceeeeeccC-CCccchheeeEEee--ccceEEEEEcCCceEEEEEEEcc
Confidence 54333222222111111 22223344333322 11279999999999988877654
No 473
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=84.80 E-value=19 Score=28.98 Aligned_cols=117 Identities=15% Similarity=0.102 Sum_probs=63.5
Q ss_pred eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcC------Ccee-eecccc-----ccccEEEEEEcCCCC----------
Q 037555 59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVG------SWKA-MGRLQS-----HSLTVTQIRFSHDDN---------- 116 (298)
Q Consensus 59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~------~~~~-~~~~~~-----~~~~v~~~~~~~~~~---------- 116 (298)
-..|+++|.+.+-++. ..-+...+||.. ..+. +-++.. .....+.+.|+....
T Consensus 25 ~WGia~~p~~~~WVad-----ngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~ 99 (336)
T TIGR03118 25 AWGLSYRPGGPFWVAN-----TGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITG 99 (336)
T ss_pred cceeEecCCCCEEEec-----CCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccc
Confidence 5689999988766666 347889999986 1211 222221 224567777764322
Q ss_pred --EEEEEeCCCeEEEEEeccCCCCccceeeeEEee-ccCCce-EEEEEcc--CCCEEEEe-eCCCeEEEEEcc
Q 037555 117 --LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQE-AHKRII-WSCSWNP--FGHEFATG-SRDKTVKIWAVE 182 (298)
Q Consensus 117 --~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~v-~~~~~~~--~~~~l~~~-~~dg~i~~wd~~ 182 (298)
.++.+++||+|.-|.......... .....+. .....| ..+++.. .+.+|+.+ ...++|.++|-.
T Consensus 100 ~a~Fif~tEdGTisaW~p~v~~t~~~--~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 100 PSRFLFVTEDGTLSGWAPALGTTRMT--RAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred ceeEEEEeCCceEEeecCcCCccccc--ccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 367889999999998643221000 0011111 111222 3444443 24455444 356777777654
No 474
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=84.47 E-value=9.5 Score=32.35 Aligned_cols=163 Identities=14% Similarity=0.119 Sum_probs=85.9
Q ss_pred cccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCC----ceE-EEEEccCCCEEEEeeCC
Q 037555 99 LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKR----IIW-SCSWNPFGHEFATGSRD 173 (298)
Q Consensus 99 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~----~v~-~~~~~~~~~~l~~~~~d 173 (298)
+..-...|..+-..|||+.+..-+. ..+.++++.+..-.. .+......+ .|+ .+..-..+..+++++.|
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~-----rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~d 289 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQI-----RKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHED 289 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccch-----hhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCC
Confidence 3444567788889999998877665 688889887643211 111111111 122 11112245678888899
Q ss_pred CeEEEE-EccCCcce--eeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCccee
Q 037555 174 KTVKIW-AVENKSSV--KQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANII 250 (298)
Q Consensus 174 g~i~~w-d~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 250 (298)
|.|.-| |.+..... ..++.++-...++.-+. |+. +.+-+++-+..|.+.++.....+ .+
T Consensus 290 G~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~--pe~---~rkgF~~l~~~G~L~~f~st~~~-------------~l 351 (733)
T COG4590 290 GLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLL--PET---NRKGFYSLYRNGTLQSFYSTSEK-------------LL 351 (733)
T ss_pred CceeeeeeeecCCCCcceeeeccccCcccceeec--ccc---ccceEEEEcCCCceeeeecccCc-------------ce
Confidence 998776 55543321 11112221122222221 221 11456666677777777554331 11
Q ss_pred eeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 251 IRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 251 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.+. .--..+.-+++||++ .+|++-. .|.++++.++
T Consensus 352 -L~~---~~~~~~~~~~~Sp~~-------~~Ll~e~-~gki~~~~l~ 386 (733)
T COG4590 352 -LFE---RAYQAPQLVAMSPNQ-------AYLLSED-QGKIRLAQLE 386 (733)
T ss_pred -ehh---hhhcCcceeeeCccc-------chheeec-CCceEEEEec
Confidence 111 122355668899988 6766654 4667777653
No 475
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=84.44 E-value=8.3 Score=24.59 Aligned_cols=60 Identities=12% Similarity=0.216 Sum_probs=34.5
Q ss_pred EEEEcCC-CCEEEeEeccC------------CCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEE
Q 037555 61 SLCCDHQ-GKLVASSCKAQ------------STAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSV 121 (298)
Q Consensus 61 ~~~~s~~-~~~l~~~~~~~------------~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 121 (298)
.+++.++ |....+-+... ...+|.+..||..+++....+.+ -...+.+++++|+..++.+
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEE
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEE
Confidence 4566666 55555443211 24579999999998775444443 3356889999999977665
No 476
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=83.80 E-value=29 Score=30.29 Aligned_cols=79 Identities=13% Similarity=0.039 Sum_probs=36.7
Q ss_pred ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCc---eEEE
Q 037555 82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRI---IWSC 158 (298)
Q Consensus 82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---v~~~ 158 (298)
.....++|.. |.....+.........+...++|.+++... ..+..+|+. ++.+......... =..+
T Consensus 127 ~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~--------G~v~~~~~l~~~~~~~HHD~ 195 (477)
T PF05935_consen 127 SSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL--------GKVIWEYDLPGGYYDFHHDI 195 (477)
T ss_dssp EEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT----------EEEEEE--TTEE-B-S-E
T ss_pred CceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC--------CCEEEeeecCCccccccccc
Confidence 5667777765 544433322111111166678888777655 777777775 3333333322211 2456
Q ss_pred EEccCCCEEEEee
Q 037555 159 SWNPFGHEFATGS 171 (298)
Q Consensus 159 ~~~~~~~~l~~~~ 171 (298)
...|+|++|+.+.
T Consensus 196 ~~l~nGn~L~l~~ 208 (477)
T PF05935_consen 196 DELPNGNLLILAS 208 (477)
T ss_dssp EE-TTS-EEEEEE
T ss_pred EECCCCCEEEEEe
Confidence 6778888877766
No 477
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=83.73 E-value=4.2 Score=20.86 Aligned_cols=30 Identities=10% Similarity=0.244 Sum_probs=18.9
Q ss_pred ccceEEEEEeecCCCCCCCcceEEEeeeCC--CcEEEe
Q 037555 259 HVAAVNRMAWKTHEKPKNSRTMQLASCGAD--NTVRVF 294 (298)
Q Consensus 259 ~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d--~~i~iw 294 (298)
....-....|+||++ .++.++..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk------~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGK------YIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSS------EEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCC------EEEEEecCCCCCCcCEE
Confidence 344567788999994 444555566 666666
No 478
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=83.53 E-value=21 Score=28.53 Aligned_cols=93 Identities=13% Similarity=0.262 Sum_probs=54.3
Q ss_pred CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee------CCCeEEEEEccCCcceeeeeecCC---
Q 037555 125 RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS------RDKTVKIWAVENKSSVKQILALPP--- 195 (298)
Q Consensus 125 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~~wd~~~~~~~~~~~~~~~--- 195 (298)
..|++||....+ +... -..-.+.|+.+.|..+.+.++.|. ....+..||..+..-. .+..
T Consensus 16 ~~lC~yd~~~~q-----W~~~--g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~----~~~~~~s 84 (281)
T PF12768_consen 16 PGLCLYDTDNSQ-----WSSP--GNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS----SLGGGSS 84 (281)
T ss_pred CEEEEEECCCCE-----eecC--CCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee----ecCCccc
Confidence 458999987633 2211 123457899999986666666664 3456888998875432 2222
Q ss_pred --CCCceEEEEEeeccccCCccEEEEee-cCCc--EEEEEe
Q 037555 196 --FNSSVTALSWVGLDRQKNHGFLAVGM-ESGV--IELWSI 231 (298)
Q Consensus 196 --~~~~v~~~~~~~~~~~~~~~~l~~g~-~dg~--i~vwd~ 231 (298)
.++++..+.+..... .++.+.|. .++. |..||-
T Consensus 85 ~~ipgpv~a~~~~~~d~---~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 85 NSIPGPVTALTFISNDG---SNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred ccCCCcEEEEEeeccCC---ceEEEeceecCCCceEEEEcC
Confidence 347788887754331 13555544 3444 445543
No 479
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=83.02 E-value=20 Score=27.91 Aligned_cols=142 Identities=11% Similarity=0.098 Sum_probs=71.5
Q ss_pred EEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC-C--CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEc
Q 037555 85 IWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR-D--RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN 161 (298)
Q Consensus 85 i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 161 (298)
-.+||+.+++....-......+.+-.+.+||+++.+|+. + ..+++++...... ...+............--....-
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~-~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDG-TCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCC-CCCceECcccccCCCccccceEC
Confidence 347888876543221223334455567889999999875 2 3577887654111 00011111111122333445556
Q ss_pred cCCCEEEEeeCCC-eEEEEEccCC-cceeeeeecCC-----CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555 162 PFGHEFATGSRDK-TVKIWAVENK-SSVKQILALPP-----FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 162 ~~~~~l~~~~~dg-~i~~wd~~~~-~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
|||+.|+.|+... +..+|.-+.. .....+..+.. ...----+...|++ ++++.+..+. .|||..+.
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG-----~lFi~an~~s--~i~d~~~n 199 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDG-----NLFIFANRGS--IIYDYKTN 199 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCC-----CEEEEEcCCc--EEEeCCCC
Confidence 7899998888764 3444443221 11111101110 01112245667777 7777777654 45677665
No 480
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=82.26 E-value=35 Score=30.21 Aligned_cols=28 Identities=11% Similarity=0.134 Sum_probs=23.0
Q ss_pred CCCEEEEeeCCCeEEEEEccCCcceeee
Q 037555 163 FGHEFATGSRDKTVKIWAVENKSSVKQI 190 (298)
Q Consensus 163 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 190 (298)
.+..++.++.+|.++.+|.++++.+...
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~ 498 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKF 498 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEE
Confidence 3456777888999999999999988744
No 481
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=81.39 E-value=6.8 Score=35.62 Aligned_cols=96 Identities=14% Similarity=0.254 Sum_probs=52.8
Q ss_pred EEEEEEcCCCCEEEEEeCCC-----eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEE
Q 037555 106 VTQIRFSHDDNLLLSVSRDR-----QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWA 180 (298)
Q Consensus 106 v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd 180 (298)
-..+.|-|+|..+++-+.|| .|.++..+.-..+. .-.. .+....+..++|+-....++. ...+.|++|-
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGe----f~lr-~~~dEk~~~~~wn~~s~vlav-~~~n~~~lwt 322 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGE----FDLR-VGCDEKAFLENWNLLSTVLAV-AEGNLLKLWT 322 (1243)
T ss_pred hhccccccCCceeeeeccCCCCCcceEEEEccCCcccCC----cccc-CCchhhhhhhhhhHHHHHHHH-hhcceEEEEE
Confidence 34589999999999977554 35555543222111 1111 122344566777755444443 3456799998
Q ss_pred ccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555 181 VENKSSVKQILALPPFNSSVTALSWVGLDR 210 (298)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (298)
..+-.-.. .....-..+.-+.|+|...
T Consensus 323 tkNyhWYL---K~e~~ip~~s~vkwhpe~~ 349 (1243)
T COG5290 323 TKNYHWYL---KVERQIPGISYVKWHPEEK 349 (1243)
T ss_pred ccceEEEE---EEeecCCCcceeeeccccC
Confidence 76643322 1111223466788998763
No 482
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=80.73 E-value=26 Score=27.75 Aligned_cols=104 Identities=7% Similarity=0.015 Sum_probs=62.9
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCC
Q 037555 105 TVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENK 184 (298)
Q Consensus 105 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~ 184 (298)
.-..++-.|||..-+++...+.|--.|..++ +....-.+....-..+...|++...++-+.. -|.-.|-++.
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tG-------ev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ 134 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATG-------EVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTL 134 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCC-------ceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCccc
Confidence 3456777888888888887787877777763 2233223333445667788888776664433 4555565554
Q ss_pred cceeeeeecCCCCCceEEEEEeeccccCCccEEEEee
Q 037555 185 SSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM 221 (298)
Q Consensus 185 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~ 221 (298)
+....-...+..........|.+.+ .+-+++.
T Consensus 135 evt~f~lp~~~a~~nlet~vfD~~G-----~lWFt~q 166 (353)
T COG4257 135 EVTRFPLPLEHADANLETAVFDPWG-----NLWFTGQ 166 (353)
T ss_pred ceEEeecccccCCCcccceeeCCCc-----cEEEeec
Confidence 4322111222334557788888888 5666664
No 483
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=80.33 E-value=60 Score=31.57 Aligned_cols=185 Identities=12% Similarity=0.175 Sum_probs=95.9
Q ss_pred eEEEEEEcCCceeeecccc-ccccEEEEEE---cC----C--CCEEEEEeC---------CCeEEEEEecc----CCCCc
Q 037555 83 AEIWLWEVGSWKAMGRLQS-HSLTVTQIRF---SH----D--DNLLLSVSR---------DRQFSVFAIQR----TGTGE 139 (298)
Q Consensus 83 ~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~---~~----~--~~~l~~~~~---------dg~i~iwd~~~----~~~~~ 139 (298)
..|.+.+..+++.+-.+.- ...-|.+++. .. . ..+|++|.. -|.+.++|+-. ++...
T Consensus 1004 f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~ 1083 (1366)
T KOG1896|consen 1004 FSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPF 1083 (1366)
T ss_pred ceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCc
Confidence 4566666666655433221 1222333333 21 1 236777642 48899999854 11111
Q ss_pred cceeeeE-EeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEE
Q 037555 140 IDYQLIA-RQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLA 218 (298)
Q Consensus 140 ~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~ 218 (298)
...+... ..+...++|..++=- +| +|+++. ..+|.+|+++....+..+ .+-..+-.+.++..-. ++|+
T Consensus 1084 t~~KlKel~~eE~KGtVsavceV-~G-~l~~~~-GqKI~v~~l~r~~~ligV-aFiD~~~yv~s~~~vk-------nlIl 1152 (1366)
T KOG1896|consen 1084 TKNKLKELYIEEQKGTVSAVCEV-RG-HLLSSQ-GQKIIVRKLDRDSELIGV-AFIDLPLYVHSMKVVK-------NLIL 1152 (1366)
T ss_pred ccceeeeeehhhcccceEEEEEe-cc-EEEEcc-CcEEEEEEeccCCcceee-EEeccceeEEehhhhh-------hhee
Confidence 1011111 112345666655422 34 455544 367999999544433333 2222333344433332 6788
Q ss_pred EeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 219 VGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 219 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
.|.--..|.+....... ..+..+. -....-.+.++.|--+| ..-.++.+..|+.|+++-.
T Consensus 1153 ~gDV~ksisfl~fqeep------------~rlsL~s-rd~~~l~v~s~EFLVdg-----~~L~flvsDa~rNi~vy~Y 1212 (1366)
T KOG1896|consen 1153 AGDVMKSISFLGFQEEP------------YRLSLLS-RDFEPLNVYSTEFLVDG-----SNLSFLVSDADRNIHVYMY 1212 (1366)
T ss_pred hhhhhhceEEEEEccCc------------eEEEEee-cCCchhhceeeeeEEcC-----CeeEEEEEcCCCcEEEEEe
Confidence 88777777777665431 2222222 11233467788888777 2357888889999988754
No 484
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=80.12 E-value=26 Score=27.51 Aligned_cols=77 Identities=12% Similarity=0.154 Sum_probs=45.7
Q ss_pred CCCceEEEEEeeccccC--CccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccce-EEEEEee-cC
Q 037555 196 FNSSVTALSWVGLDRQK--NHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAA-VNRMAWK-TH 271 (298)
Q Consensus 196 ~~~~v~~~~~~~~~~~~--~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~-~~ 271 (298)
....|+||+--...... .-..|+.|+++|.|+|.|.... ..+..+. +..-... ...-.|. -|
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af-------------~il~~~~-lpsvPv~i~~~G~~devd 240 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAF-------------TILKQVQ-LPSVPVFISVSGQYDEVD 240 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhh-------------eeEEEEe-cCCCceEEEEEeeeeccc
Confidence 45567888765543221 3368999999999999998765 3333332 1111111 1122232 23
Q ss_pred CCCCCCcceEEEeeeCCCcEEEe
Q 037555 272 EKPKNSRTMQLASCGADNTVRVF 294 (298)
Q Consensus 272 ~~~~~~~~~~l~s~~~d~~i~iw 294 (298)
..|+.++.||.|++-
T Consensus 241 --------yRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 241 --------YRIVVACRDGKIYTI 255 (257)
T ss_pred --------eEEEEEeCCCEEEEE
Confidence 578888889988764
No 485
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=79.86 E-value=51 Score=30.51 Aligned_cols=72 Identities=22% Similarity=0.337 Sum_probs=41.0
Q ss_pred EEEEEccCCCEEEEeeCCCe-----EEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEE
Q 037555 156 WSCSWNPFGHEFATGSRDKT-----VKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWS 230 (298)
Q Consensus 156 ~~~~~~~~~~~l~~~~~dg~-----i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd 230 (298)
..+.|-|+|..+++-..||. |.++.-...+. .....-.+....+..++|+-.. ..++. .....|.+|-
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrH-Gef~lr~~~dEk~~~~~wn~~s-----~vlav-~~~n~~~lwt 322 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRH-GEFDLRVGCDEKAFLENWNLLS-----TVLAV-AEGNLLKLWT 322 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCccc-CCccccCCchhhhhhhhhhHHH-----HHHHH-hhcceEEEEE
Confidence 34789999999999775543 55554322111 1110111234456677787765 34443 4567799997
Q ss_pred eeec
Q 037555 231 ISVN 234 (298)
Q Consensus 231 ~~~~ 234 (298)
..+.
T Consensus 323 tkNy 326 (1243)
T COG5290 323 TKNY 326 (1243)
T ss_pred ccce
Confidence 7653
No 486
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=79.25 E-value=32 Score=27.78 Aligned_cols=127 Identities=10% Similarity=0.084 Sum_probs=72.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeec-----cCCceEEEEEccCC------------CEEE
Q 037555 106 VTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEA-----HKRIIWSCSWNPFG------------HEFA 168 (298)
Q Consensus 106 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~------------~~l~ 168 (298)
-+.|+++|.+.+-++....+...+||............++..+.. .....+.+.|+... ..|+
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 478999999988888888899999998722111110222333221 12356777776433 2367
Q ss_pred EeeCCCeEEEEEccCCcce--eeeeecC-C-CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555 169 TGSRDKTVKIWAVENKSSV--KQILALP-P-FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 169 ~~~~dg~i~~wd~~~~~~~--~~~~~~~-~-~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
.+++||+|.-|...-.... .....+. . ....-..+++...+. ...+.++--..++|.|||-.-.
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~--~~~LYaadF~~g~IDVFd~~f~ 172 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGG--GDYLYAANFRQGRIDVFKGSFR 172 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCC--CceEEEeccCCCceEEecCccc
Confidence 8899999999985433220 1111121 1 122334566664321 1133444446789999986544
No 487
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=78.01 E-value=42 Score=28.48 Aligned_cols=152 Identities=11% Similarity=0.068 Sum_probs=77.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCc
Q 037555 106 VTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKS 185 (298)
Q Consensus 106 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 185 (298)
...+..++++.+++.+.....++-||-.... +.... ......+..+.+.+++..++++ .+|.+.. ....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~-----W~~~~--~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~ 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPY-----WQPHN--RASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGL 311 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcc-----eEEec--CCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCC
Confidence 4445667777766666544433344432100 11111 2234568899999888877665 4565443 333332
Q ss_pred ce--eeeeecC--CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccc
Q 037555 186 SV--KQILALP--PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVA 261 (298)
Q Consensus 186 ~~--~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (298)
.. ..+.... .....+.++.|.+++ .. +.++..|.+..-. ..+ +..........-..
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~-----~~-~a~G~~G~v~~s~-D~G-------------~tW~~~~~~~~~~~ 371 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKK-----EA-WAAGGSGILLRST-DGG-------------KSWKRDKGADNIAA 371 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCC-----cE-EEEECCCcEEEeC-CCC-------------cceeEccccCCCCc
Confidence 11 0111222 122458889998876 44 4455677665442 222 11111110112345
Q ss_pred eEEEEEeecCCCCCCCcceEEEeeeCCCcEEEe
Q 037555 262 AVNRMAWKTHEKPKNSRTMQLASCGADNTVRVF 294 (298)
Q Consensus 262 ~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 294 (298)
.+..+.|.+++ ..++ .+.+|.|.-|
T Consensus 372 ~ly~v~f~~~~-------~g~~-~G~~G~il~~ 396 (398)
T PLN00033 372 NLYSVKFFDDK-------KGFV-LGNDGVLLRY 396 (398)
T ss_pred ceeEEEEcCCC-------ceEE-EeCCcEEEEe
Confidence 67889997776 3444 4557776544
No 488
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=77.95 E-value=33 Score=27.25 Aligned_cols=151 Identities=8% Similarity=0.057 Sum_probs=93.2
Q ss_pred CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccC
Q 037555 56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRT 135 (298)
Q Consensus 56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 135 (298)
...-..++-.|||..-.++. ..+.|--.|..+++....--+....-..+...|||..-++=+.. -|.-.|.++.
T Consensus 61 G~ap~dvapapdG~VWft~q-----g~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ 134 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQ-----GTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTL 134 (353)
T ss_pred CCCccccccCCCCceEEecC-----ccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCccc
Confidence 34567888889998877773 36777778888888766544555566788889998876664433 3333444332
Q ss_pred CCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC---------CeEEEEEccCCcceeeeeecCCCCCceEEEEEe
Q 037555 136 GTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD---------KTVKIWAVENKSSVKQILALPPFNSSVTALSWV 206 (298)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~ 206 (298)
.. .+.....+..........|.+.|++.+++... +.|++|+.. .......|+..
T Consensus 135 ev----t~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP-------------qG~gpyGi~at 197 (353)
T COG4257 135 EV----TRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP-------------QGGGPYGICAT 197 (353)
T ss_pred ce----EEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC-------------CCCCCcceEEC
Confidence 11 11111122334567888899999998888632 223333222 23345678888
Q ss_pred eccccCCccEEEEeecCCcEEEEEeeec
Q 037555 207 GLDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 207 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
|++ ++-++.-.+..|-..|...+
T Consensus 198 pdG-----svwyaslagnaiaridp~~~ 220 (353)
T COG4257 198 PDG-----SVWYASLAGNAIARIDPFAG 220 (353)
T ss_pred CCC-----cEEEEeccccceEEcccccC
Confidence 888 56666556666766666554
No 489
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=77.10 E-value=9.5 Score=34.58 Aligned_cols=70 Identities=11% Similarity=0.160 Sum_probs=48.0
Q ss_pred CCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEe
Q 037555 152 KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSI 231 (298)
Q Consensus 152 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~ 231 (298)
...++++.-+|.++.++.+..||.|++|+....+... .. ....+...+.|...+ |++...|..+.-|.-
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk---i~-~~~~p~~nlv~tnhg-------l~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK---IC-EEAKPKENLVFTNHG-------LVTATSDRRALAWKE 82 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhh---hh-hhcCCccceeeeccc-------eEEEeccchhheeec
Confidence 3456788888999999999999999999987655432 11 123344556666654 566666777777754
Q ss_pred e
Q 037555 232 S 232 (298)
Q Consensus 232 ~ 232 (298)
.
T Consensus 83 d 83 (1636)
T KOG3616|consen 83 D 83 (1636)
T ss_pred c
Confidence 3
No 490
>PLN02193 nitrile-specifier protein
Probab=75.99 E-value=53 Score=28.62 Aligned_cols=112 Identities=5% Similarity=-0.005 Sum_probs=51.8
Q ss_pred CCCEEEeEeccCCCCceEEEEEEcCCceeee--cccc--ccccEEEEEEcCCCCEEEEEeCCC-----eEEEEEeccCCC
Q 037555 67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMG--RLQS--HSLTVTQIRFSHDDNLLLSVSRDR-----QFSVFAIQRTGT 137 (298)
Q Consensus 67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~--~~~~--~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~ 137 (298)
++.+.+.|+.+....-..+.+||+.+.+-.. .+.. ....-.+++. -++++++.|+.++ .+..||+.+..
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~- 305 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK- 305 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE-
Confidence 4556666654321223568888887654322 1110 1111112222 2556666666543 35667765432
Q ss_pred CccceeeeEEe---eccCCceEEEEEccCCCEEEEeeCC----CeEEEEEccCCcc
Q 037555 138 GEIDYQLIARQ---EAHKRIIWSCSWNPFGHEFATGSRD----KTVKIWAVENKSS 186 (298)
Q Consensus 138 ~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~wd~~~~~~ 186 (298)
+..+... ...... ..++. -++..++.++.+ ..+.+||+.+.+-
T Consensus 306 ----W~~~~~~~~~~~~R~~-~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 306 ----WFHCSTPGDSFSIRGG-AGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred ----EEeCCCCCCCCCCCCC-cEEEE-ECCcEEEEECCCCCccCceEEEECCCCEE
Confidence 2221110 001111 11222 245666666654 4588999887653
No 491
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=75.53 E-value=7.1 Score=18.94 Aligned_cols=24 Identities=17% Similarity=0.091 Sum_probs=19.4
Q ss_pred CEEEEeeCCCeEEEEEccCCccee
Q 037555 165 HEFATGSRDKTVKIWAVENKSSVK 188 (298)
Q Consensus 165 ~~l~~~~~dg~i~~wd~~~~~~~~ 188 (298)
..++.++.+|.+..+|.++++...
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILW 30 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEE
Confidence 367788889999999998877654
No 492
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=75.46 E-value=48 Score=27.85 Aligned_cols=148 Identities=10% Similarity=0.152 Sum_probs=87.7
Q ss_pred eEEEEEEcC--Cceeeecccc-------ccccEEEEEE--cC-CCC-EEEEEeCCCeEEEEEeccCCCCccceeeeEEee
Q 037555 83 AEIWLWEVG--SWKAMGRLQS-------HSLTVTQIRF--SH-DDN-LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQE 149 (298)
Q Consensus 83 ~~i~vw~~~--~~~~~~~~~~-------~~~~v~~~~~--~~-~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 149 (298)
..|++|.+. ++. +..+.. ....+..+++ ++ +|. ++++...+|.+.-|.+.....+.....+++.+.
T Consensus 127 n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~ 205 (381)
T PF02333_consen 127 NSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK 205 (381)
T ss_dssp -EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE
T ss_pred CeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec
Confidence 579999775 333 222221 1123566766 33 454 667778899999999976555444466777776
Q ss_pred ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCc--ceeeeeec--CCCCCceEEEEEeeccccCCccEEEEee-cCC
Q 037555 150 AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKS--SVKQILAL--PPFNSSVTALSWVGLDRQKNHGFLAVGM-ESG 224 (298)
Q Consensus 150 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~--~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~l~~g~-~dg 224 (298)
. ...+..+........|+.+-.+.-|.-|+.+... ....+... ......|..|++-... ... .+|++++ .++
T Consensus 206 ~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~-~g~-gYLivSsQG~~ 282 (381)
T PF02333_consen 206 V-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGS-DGK-GYLIVSSQGDN 282 (381)
T ss_dssp --SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-C-CC--EEEEEEEGGGT
T ss_pred C-CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecC-CCC-eEEEEEcCCCC
Confidence 4 4578999999888899999998888888876322 11212122 2245678888886543 111 3555544 577
Q ss_pred cEEEEEeeec
Q 037555 225 VIELWSISVN 234 (298)
Q Consensus 225 ~i~vwd~~~~ 234 (298)
...||+....
T Consensus 283 sf~Vy~r~~~ 292 (381)
T PF02333_consen 283 SFAVYDREGP 292 (381)
T ss_dssp EEEEEESSTT
T ss_pred eEEEEecCCC
Confidence 8999998753
No 493
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=74.52 E-value=7.8 Score=18.34 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=19.3
Q ss_pred ceEEEEEeeccccCCccEEEEeecCCcEEEEE
Q 037555 199 SVTALSWVGLDRQKNHGFLAVGMESGVIELWS 230 (298)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd 230 (298)
.|.+++..+ .+++.+...+.+++|.
T Consensus 3 ~i~aia~g~-------~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD-------SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC-------CEEEEEeCCCeEEecC
Confidence 466777766 6888888889999873
No 494
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=74.35 E-value=69 Score=29.15 Aligned_cols=165 Identities=12% Similarity=0.062 Sum_probs=0.0
Q ss_pred CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEc---------CCceeeeccccccccEEEEEEcCCCCEEEEEeC-CC
Q 037555 56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEV---------GSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR-DR 125 (298)
Q Consensus 56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg 125 (298)
.+.|..+.|.++++.+++. .++|.|.+||. ...-.-..-..+..-|..........++++.+. ++
T Consensus 129 ~~kvv~Ik~~~~~~~I~vv-----l~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~ 203 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVV-----LENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSN 203 (670)
T ss_pred ccceEEEEEecCCCEEEEE-----EcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCC
Q ss_pred eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCc-eEEEE
Q 037555 126 QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSS-VTALS 204 (298)
Q Consensus 126 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~-v~~~~ 204 (298)
.=..|.+-.-.........+.....+........|.-+...|+-- .+++|.+|++...+....+.....-... -.-+.
T Consensus 204 ~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vS 282 (670)
T PF10395_consen 204 SKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVS 282 (670)
T ss_pred CcEEEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceE
Q ss_pred EeeccccCCccEEEEeecCCcEEEEEe
Q 037555 205 WVGLDRQKNHGFLAVGMESGVIELWSI 231 (298)
Q Consensus 205 ~~~~~~~~~~~~l~~g~~dg~i~vwd~ 231 (298)
+.|-.. +.++.+. +..|++.|+
T Consensus 283 l~~~s~----nRvLLs~-~nkIyLld~ 304 (670)
T PF10395_consen 283 LKPPSP----NRVLLSV-NNKIYLLDL 304 (670)
T ss_pred eecCCC----CeEEEEc-CCEEEEEee
No 495
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=74.20 E-value=78 Score=29.70 Aligned_cols=128 Identities=15% Similarity=0.179 Sum_probs=72.6
Q ss_pred cccccEEEEEEc---C--C--CCEEEEEeCCCeEEEEEeccCC--------CCccceeeeEEeec---cCCceEEEEEcc
Q 037555 101 SHSLTVTQIRFS---H--D--DNLLLSVSRDRQFSVFAIQRTG--------TGEIDYQLIARQEA---HKRIIWSCSWNP 162 (298)
Q Consensus 101 ~~~~~v~~~~~~---~--~--~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~~---~~~~v~~~~~~~ 162 (298)
....+|..|+|. . + .++|++= ....+.|+...-.. .......++..+.. ...+...++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 356788888887 2 1 2344443 45566677622211 11112233444432 234678899999
Q ss_pred -CCCEEEEeeCCCeEEEEEccCCcce--eeeeec---CC-------CCCceEEEEEeeccccCCccEEEEeecCCcEEEE
Q 037555 163 -FGHEFATGSRDKTVKIWAVENKSSV--KQILAL---PP-------FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELW 229 (298)
Q Consensus 163 -~~~~l~~~~~dg~i~~wd~~~~~~~--~~~~~~---~~-------~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vw 229 (298)
+...||+....|.-.|||+...... ..+... .+ ....-..+.|.++. ..|+.++ ...+.++
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~-----~~lLv~~-r~~l~~~ 229 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDS-----NRLLVCN-RSKLMLI 229 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCC-----CEEEEEc-CCceEEE
Confidence 5578999999999999999211110 000000 00 11223477887765 4666654 4568999
Q ss_pred Eeeecc
Q 037555 230 SISVNR 235 (298)
Q Consensus 230 d~~~~~ 235 (298)
|+.+..
T Consensus 230 d~~~~~ 235 (765)
T PF10214_consen 230 DFESNW 235 (765)
T ss_pred ECCCCC
Confidence 998763
No 496
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=71.65 E-value=16 Score=33.21 Aligned_cols=70 Identities=11% Similarity=0.173 Sum_probs=44.8
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEcc
Q 037555 103 SLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVE 182 (298)
Q Consensus 103 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~ 182 (298)
...++++.-+|.++.++.++.||.|++|+........ +.. ...+-..+.|... -|++...|.++.-|.-.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk-----i~~---~~~p~~nlv~tnh--gl~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK-----ICE---EAKPKENLVFTNH--GLVTATSDRRALAWKED 83 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhh-----hhh---hcCCccceeeecc--ceEEEeccchhheeecc
Confidence 4457788889999999999999999999987532111 111 1122233445433 36666667777777543
No 497
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=71.20 E-value=25 Score=35.21 Aligned_cols=153 Identities=14% Similarity=0.139 Sum_probs=85.8
Q ss_pred cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQ 133 (298)
Q Consensus 54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 133 (298)
.|...++.+.-+++|..+-.= |+.|+.||....+..-.-......++.+.-.-||+..+ .++.. +-|+.
T Consensus 360 aH~A~LTgv~~~~~ge~lRlH-------d~~LY~~d~~~~~Wk~~~~~~d~~~S~Ls~qgdG~lYA---k~~~~-l~nLS 428 (1774)
T PF11725_consen 360 AHIAHLTGVHTDPDGEQLRLH-------DDRLYQFDPNTARWKPPPDKSDTPFSSLSRQGDGKLYA---KDDDT-LVNLS 428 (1774)
T ss_pred HHHHHhhccccCCCCCeEEee-------cCceeeeccccceecCCCCcccchhhhhcccCCCceEe---cCCCc-eeecC
Confidence 466667777777777777766 77888888765432210111233444444444555444 11111 23333
Q ss_pred cCCCCccceeeeEEeeccCCceEEEEEccCCCE-EEEeeCCCeEEEEEccCCc-----ceeeeeecCCCCCceEEEEEee
Q 037555 134 RTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHE-FATGSRDKTVKIWAVENKS-----SVKQILALPPFNSSVTALSWVG 207 (298)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~~wd~~~~~-----~~~~~~~~~~~~~~v~~~~~~~ 207 (298)
.... -...-..+.+...++++.. ++++.....+.+|++.... .......+.+......+|.+++
T Consensus 429 s~~~----------~~~~v~~l~sfSv~~~g~vA~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~VgLs~ 498 (1774)
T PF11725_consen 429 SGQM----------SEAEVDKLKSFSVAPDGTVAMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVGLSN 498 (1774)
T ss_pred CCCc----------chhhhhhcccccccCCCceeeeecCCCcceeeeccCccccccCccceeeeeccCCchhhhheeecC
Confidence 3210 0111234666777888876 5566656667999887541 1111113333344667788877
Q ss_pred ccccCCccEEEEeecCCcEEEEEeeec
Q 037555 208 LDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
+ .|+++..+|.++.=++...
T Consensus 499 d-------rLFvADseGkLYsa~l~~~ 518 (1774)
T PF11725_consen 499 D-------RLFVADSEGKLYSADLPAA 518 (1774)
T ss_pred C-------eEEEEeCCCCEEecccccc
Confidence 4 5888888999888877654
No 498
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=71.06 E-value=95 Score=29.35 Aligned_cols=145 Identities=13% Similarity=0.214 Sum_probs=76.5
Q ss_pred ceEEEEEEcCCceeeeccccccccEEEEEE-cCCCC--------EEEEEeCCCeEEEEEeccCCCCcc--ceeeeEEeec
Q 037555 82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRF-SHDDN--------LLLSVSRDRQFSVFAIQRTGTGEI--DYQLIARQEA 150 (298)
Q Consensus 82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~-~~~~~--------~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~ 150 (298)
|+.+.+|+..++...+.+......|..+.. -|..+ +|+.+ ....+.++-+........ ....-.....
T Consensus 101 dnkLiLWnynn~neyq~idd~shtIlkVkLvrPkantFvs~i~hlL~vA-T~~e~~ilgvs~d~~T~Els~fnTgl~vsv 179 (1263)
T COG5308 101 DNKLILWNYNNSNEYQEIDDFSHTILKVKLVRPKANTFVSRISHLLFVA-TEKEVMILGVSKDTKTGELSLFNTGLVVSV 179 (1263)
T ss_pred CCEEEEEecCCCcchhhhhhhhhheeEEEEeccCCcccHHhhhhhhhhh-hhheeeEEEEEeccccceeEEEecceEEec
Confidence 889999999877665555544445544443 33222 12111 122333443322111000 0000001112
Q ss_pred cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCC--------cc-------------eeeeeecCCCCCceEEEEEeecc
Q 037555 151 HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENK--------SS-------------VKQILALPPFNSSVTALSWVGLD 209 (298)
Q Consensus 151 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~--------~~-------------~~~~~~~~~~~~~v~~~~~~~~~ 209 (298)
..-.|.++.-+.+|+.|++|-.| +.+|.+.-. ++ +.....+..+...|..++.....
T Consensus 180 qGinV~civs~e~GrIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~vDqsR 257 (1263)
T COG5308 180 QGINVRCIVSEEDGRIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAVDQSR 257 (1263)
T ss_pred cCceeEEEEeccCCcEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheeecccc
Confidence 23457888878889999888877 556654310 00 00111122345667777777665
Q ss_pred ccCCccEEEEeecCCcEEEEEeeec
Q 037555 210 RQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 210 ~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
.+|.+-.....|+-|.+...
T Consensus 258 -----g~ly~Lr~kS~Vray~itkn 277 (1263)
T COG5308 258 -----GLLYVLRKKSAVRAYSITKN 277 (1263)
T ss_pred -----cceeeecccceeeeEeeecc
Confidence 67777777888888887654
No 499
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=71.03 E-value=56 Score=26.66 Aligned_cols=68 Identities=7% Similarity=0.131 Sum_probs=34.3
Q ss_pred CCCEEEeEeccCCCCceEEEEEEcCCcee--eeccccccccEEEEEEcCCCCEEEEEeCCCe----EEEEEeccC
Q 037555 67 QGKLVASSCKAQSTAAAEIWLWEVGSWKA--MGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQ----FSVFAIQRT 135 (298)
Q Consensus 67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~----i~iwd~~~~ 135 (298)
++++.+.|+.........+..||+.+.+- +..+... ......+...++++.+.|+.++. +..||+.+.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 45666666542212235688888876543 2222211 11112222335677777776542 457777653
No 500
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=70.89 E-value=9.6 Score=19.69 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=16.1
Q ss_pred CCCEEEEeeCCCeEEEEEccC
Q 037555 163 FGHEFATGSRDKTVKIWAVEN 183 (298)
Q Consensus 163 ~~~~l~~~~~dg~i~~wd~~~ 183 (298)
.+..++.++.||.|..+|.++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 366899999999999998764
Done!