Query 037555
Match_columns 298
No_of_seqs 467 out of 1617
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 23:21:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037555.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037555hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 5.5E-42 1.9E-46 285.6 28.4 252 2-297 128-410 (410)
2 3ow8_A WD repeat-containing pr 100.0 2.6E-41 8.9E-46 272.6 29.2 252 3-298 57-321 (321)
3 2ynn_A Coatomer subunit beta'; 100.0 8.9E-41 3.1E-45 267.6 29.5 242 16-297 5-258 (304)
4 1got_B GT-beta; complex (GTP-b 100.0 2.3E-40 7.8E-45 269.4 28.9 250 3-295 76-340 (340)
5 4gqb_B Methylosome protein 50; 100.0 1.2E-40 4.2E-45 270.7 27.2 233 21-297 79-330 (344)
6 1vyh_C Platelet-activating fac 100.0 1.9E-40 6.4E-45 276.4 28.8 243 16-297 100-368 (410)
7 3ow8_A WD repeat-containing pr 100.0 1.7E-40 5.7E-45 267.8 27.0 241 14-297 22-278 (321)
8 4g56_B MGC81050 protein; prote 100.0 1.8E-40 6.3E-45 271.4 26.7 254 2-297 68-342 (357)
9 3frx_A Guanine nucleotide-bind 100.0 1.1E-39 3.7E-44 263.0 30.5 254 16-297 9-316 (319)
10 2pbi_B Guanine nucleotide-bind 100.0 1.9E-39 6.6E-44 265.2 29.9 251 3-295 85-354 (354)
11 2hes_X YDR267CP; beta-propelle 100.0 6.8E-39 2.3E-43 259.6 29.6 258 3-297 33-327 (330)
12 2pm7_B Protein transport prote 100.0 1.1E-38 3.6E-43 254.7 29.9 250 17-297 2-284 (297)
13 4gqb_B Methylosome protein 50; 100.0 5.2E-39 1.8E-43 261.1 28.0 236 21-297 27-288 (344)
14 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.3E-38 8E-43 258.0 31.4 259 14-297 5-282 (345)
15 2hes_X YDR267CP; beta-propelle 100.0 2.8E-38 9.6E-43 255.9 31.1 254 13-297 3-279 (330)
16 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.8E-38 9.4E-43 257.5 29.8 213 48-296 7-223 (345)
17 1got_B GT-beta; complex (GTP-b 100.0 3.1E-38 1.1E-42 256.8 30.0 241 14-297 45-300 (340)
18 2ynn_A Coatomer subunit beta'; 100.0 2.1E-38 7.1E-43 253.9 28.0 212 48-297 5-216 (304)
19 3iz6_a 40S ribosomal protein R 100.0 2.1E-39 7.1E-44 267.6 22.1 259 2-297 86-374 (380)
20 1nr0_A Actin interacting prote 100.0 4.8E-38 1.6E-42 274.5 30.8 270 5-297 40-354 (611)
21 2xzm_R RACK1; ribosome, transl 100.0 1.2E-37 4.1E-42 253.6 28.7 257 15-297 12-339 (343)
22 2pm7_B Protein transport prote 100.0 2E-37 6.9E-42 247.3 29.1 222 49-297 2-237 (297)
23 4g56_B MGC81050 protein; prote 100.0 4.5E-38 1.5E-42 257.3 25.3 238 19-297 37-300 (357)
24 1erj_A Transcriptional repress 100.0 6E-37 2E-41 254.0 30.6 257 5-297 86-388 (393)
25 4ery_A WD repeat-containing pr 100.0 7.3E-37 2.5E-41 245.8 29.9 209 47-297 14-222 (312)
26 2pbi_B Guanine nucleotide-bind 100.0 6.1E-37 2.1E-41 250.4 29.9 242 14-297 54-314 (354)
27 3bg1_A Protein SEC13 homolog; 100.0 2.8E-38 9.5E-43 254.5 20.6 249 19-297 8-292 (316)
28 3frx_A Guanine nucleotide-bind 100.0 6.5E-37 2.2E-41 246.8 27.7 211 48-297 9-226 (319)
29 4ery_A WD repeat-containing pr 100.0 2.2E-36 7.4E-41 243.0 30.4 241 14-297 13-267 (312)
30 1nr0_A Actin interacting prote 100.0 6E-37 2.1E-41 267.6 29.0 261 3-297 169-566 (611)
31 3jrp_A Fusion protein of prote 100.0 2.5E-36 8.7E-41 248.6 30.4 250 14-297 1-286 (379)
32 2ymu_A WD-40 repeat protein; u 100.0 1.3E-36 4.3E-41 264.0 28.8 243 4-295 325-577 (577)
33 4aow_A Guanine nucleotide-bind 100.0 2.6E-36 9E-41 245.1 27.4 255 14-297 28-336 (340)
34 3bg1_A Protein SEC13 homolog; 100.0 6.7E-37 2.3E-41 246.4 21.5 221 51-297 8-246 (316)
35 1erj_A Transcriptional repress 100.0 2.2E-35 7.5E-40 244.6 30.6 246 22-297 62-340 (393)
36 3iz6_a 40S ribosomal protein R 100.0 8E-37 2.7E-41 252.1 21.1 248 9-297 51-328 (380)
37 2xzm_R RACK1; ribosome, transl 100.0 2.6E-35 8.8E-40 239.9 29.7 212 48-296 13-242 (343)
38 3f3f_A Nucleoporin SEH1; struc 100.0 5E-35 1.7E-39 237.8 29.1 235 50-297 5-336 (351)
39 3dm0_A Maltose-binding peripla 100.0 1.1E-35 3.8E-40 263.4 26.1 239 17-297 375-631 (694)
40 2ymu_A WD-40 repeat protein; u 100.0 4.5E-35 1.5E-39 254.3 29.1 245 4-297 284-538 (577)
41 3jrp_A Fusion protein of prote 100.0 7.2E-35 2.5E-39 239.9 27.8 220 48-297 3-239 (379)
42 4h5i_A Guanine nucleotide-exch 100.0 2.9E-35 9.8E-40 241.4 24.9 206 55-297 132-342 (365)
43 1gxr_A ESG1, transducin-like e 100.0 7E-34 2.4E-38 230.3 32.4 249 3-298 71-337 (337)
44 4e54_B DNA damage-binding prot 100.0 7.2E-36 2.4E-40 250.8 20.9 213 47-297 110-326 (435)
45 3k26_A Polycomb protein EED; W 100.0 8.3E-36 2.8E-40 244.4 20.5 263 4-297 44-365 (366)
46 2j04_B YDR362CP, TAU91; beta p 100.0 1E-35 3.6E-40 253.3 21.7 270 3-297 182-516 (524)
47 3dwl_C Actin-related protein 2 100.0 5.6E-35 1.9E-39 240.8 25.2 279 2-296 31-377 (377)
48 3vl1_A 26S proteasome regulato 100.0 5.7E-35 2E-39 244.1 25.3 253 3-297 77-364 (420)
49 1sq9_A Antiviral protein SKI8; 100.0 1.3E-34 4.4E-39 240.1 25.7 261 3-297 35-394 (397)
50 1k8k_C P40, ARP2/3 complex 41 100.0 3.6E-34 1.2E-38 235.3 28.1 277 3-297 29-360 (372)
51 3i2n_A WD repeat-containing pr 100.0 1E-34 3.5E-39 237.2 24.4 271 3-297 43-352 (357)
52 3dm0_A Maltose-binding peripla 100.0 3E-34 1E-38 254.3 28.7 265 3-297 404-692 (694)
53 4aez_A CDC20, WD repeat-contai 100.0 3.9E-34 1.3E-38 237.8 26.9 250 3-297 112-379 (401)
54 1k8k_C P40, ARP2/3 complex 41 100.0 1.8E-33 6.3E-38 231.1 30.7 237 20-297 4-273 (372)
55 4e54_B DNA damage-binding prot 100.0 4.5E-35 1.6E-39 245.9 21.4 255 17-297 112-429 (435)
56 3dwl_C Actin-related protein 2 100.0 3.5E-35 1.2E-39 242.0 20.1 224 52-297 7-235 (377)
57 3zwl_B Eukaryotic translation 100.0 2E-33 6.8E-38 230.4 30.3 259 17-297 25-345 (369)
58 1r5m_A SIR4-interacting protei 100.0 1.2E-33 4.1E-38 236.0 27.9 266 3-297 67-424 (425)
59 3jro_A Fusion protein of prote 100.0 3.8E-34 1.3E-38 255.2 26.1 247 17-297 2-284 (753)
60 1gxr_A ESG1, transducin-like e 100.0 4.1E-33 1.4E-37 225.8 29.6 232 20-297 47-295 (337)
61 3ei3_B DNA damage-binding prot 100.0 9.6E-34 3.3E-38 234.0 26.2 256 3-297 95-381 (383)
62 2xyi_A Probable histone-bindin 100.0 1.8E-33 6.1E-38 235.8 27.3 254 18-297 122-409 (430)
63 2pm9_A Protein WEB1, protein t 100.0 7.4E-34 2.5E-38 236.9 24.8 252 3-297 44-336 (416)
64 3k26_A Polycomb protein EED; W 100.0 3.6E-34 1.2E-38 234.6 22.4 251 19-297 13-317 (366)
65 3gre_A Serine/threonine-protei 100.0 4.9E-34 1.7E-38 239.7 23.0 261 12-297 50-358 (437)
66 2pm9_A Protein WEB1, protein t 100.0 1.6E-34 5.6E-39 240.9 19.5 270 3-297 88-413 (416)
67 3ei3_B DNA damage-binding prot 100.0 3.5E-33 1.2E-37 230.6 26.7 214 46-297 63-281 (383)
68 3mkq_A Coatomer beta'-subunit; 100.0 1.8E-33 6.2E-38 253.4 26.7 240 16-297 5-258 (814)
69 4a11_B DNA excision repair pro 100.0 1.1E-32 3.9E-37 228.9 29.2 265 5-297 24-364 (408)
70 2j04_B YDR362CP, TAU91; beta p 100.0 2.7E-34 9.4E-39 244.6 19.6 205 50-297 201-427 (524)
71 4aow_A Guanine nucleotide-bind 100.0 1.3E-32 4.3E-37 223.4 28.3 210 48-297 30-245 (340)
72 1sq9_A Antiviral protein SKI8; 100.0 2.8E-33 9.5E-38 232.1 23.7 245 17-297 9-321 (397)
73 2aq5_A Coronin-1A; WD40 repeat 100.0 5E-33 1.7E-37 231.2 25.0 255 3-297 56-341 (402)
74 3vl1_A 26S proteasome regulato 100.0 4.4E-33 1.5E-37 232.6 24.7 234 28-297 60-321 (420)
75 3i2n_A WD repeat-containing pr 100.0 2.7E-33 9.2E-38 228.8 22.7 242 18-297 12-290 (357)
76 3odt_A Protein DOA1; ubiquitin 100.0 2.8E-32 9.5E-37 218.8 27.9 242 3-297 38-295 (313)
77 3zwl_B Eukaryotic translation 100.0 3.2E-32 1.1E-36 223.2 28.8 210 48-297 24-248 (369)
78 3jro_A Fusion protein of prote 100.0 6.7E-33 2.3E-37 247.2 26.5 219 49-297 2-237 (753)
79 4gga_A P55CDC, cell division c 100.0 1.5E-32 5.2E-37 229.5 26.9 252 3-297 124-394 (420)
80 2aq5_A Coronin-1A; WD40 repeat 100.0 9.3E-33 3.2E-37 229.6 25.0 208 49-297 74-298 (402)
81 2w18_A PALB2, fancn, partner a 100.0 5.6E-33 1.9E-37 219.0 21.9 251 3-297 62-356 (356)
82 3v7d_B Cell division control p 100.0 2.7E-32 9.2E-37 230.8 27.2 244 3-297 141-420 (464)
83 1r5m_A SIR4-interacting protei 100.0 5.6E-32 1.9E-36 225.8 28.7 239 20-297 41-360 (425)
84 3sfz_A APAF-1, apoptotic pepti 100.0 3E-32 1E-36 255.6 30.1 241 16-297 607-912 (1249)
85 2j04_A TAU60, YPL007P, hypothe 100.0 1.8E-32 6.1E-37 229.4 25.3 240 14-297 42-296 (588)
86 4aez_A CDC20, WD repeat-contai 100.0 6.1E-32 2.1E-36 224.5 27.7 200 54-297 132-335 (401)
87 3gre_A Serine/threonine-protei 100.0 2.6E-32 9E-37 229.2 25.4 232 35-297 37-291 (437)
88 3dw8_B Serine/threonine-protei 100.0 9.1E-33 3.1E-37 232.5 22.6 231 22-297 26-372 (447)
89 2xyi_A Probable histone-bindin 100.0 2.4E-32 8.2E-37 229.0 23.1 218 50-297 122-352 (430)
90 3v7d_B Cell division control p 100.0 1.3E-31 4.5E-36 226.6 27.7 238 16-297 113-380 (464)
91 2oaj_A Protein SNI1; WD40 repe 100.0 7.3E-32 2.5E-36 244.0 27.2 207 51-297 12-241 (902)
92 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.5E-31 1.2E-35 222.9 29.6 242 3-297 138-390 (445)
93 1p22_A F-BOX/WD-repeat protein 100.0 8.8E-32 3E-36 225.9 25.8 249 2-297 151-413 (435)
94 3mmy_A MRNA export factor; mRN 100.0 2.1E-32 7.2E-37 224.2 21.5 250 12-295 27-343 (368)
95 4a11_B DNA excision repair pro 100.0 3E-31 1E-35 220.4 28.4 223 48-297 35-275 (408)
96 3odt_A Protein DOA1; ubiquitin 100.0 2.9E-31 9.8E-36 212.8 27.0 230 15-297 9-254 (313)
97 3mkq_A Coatomer beta'-subunit; 100.0 9.5E-32 3.3E-36 242.3 26.5 208 48-297 5-216 (814)
98 2ovr_B FBW7, F-BOX/WD repeat p 100.0 8.5E-31 2.9E-35 220.6 30.1 247 3-297 178-441 (445)
99 3mmy_A MRNA export factor; mRN 100.0 1.1E-31 3.7E-36 219.9 23.6 219 48-297 31-303 (368)
100 3dw8_B Serine/threonine-protei 100.0 1.3E-31 4.3E-36 225.5 24.6 214 54-297 26-314 (447)
101 2vdu_B TRNA (guanine-N(7)-)-me 100.0 5.3E-31 1.8E-35 222.1 27.2 209 52-296 98-337 (450)
102 1pgu_A Actin interacting prote 100.0 5.3E-31 1.8E-35 230.1 27.8 233 21-297 15-282 (615)
103 1yfq_A Cell cycle arrest prote 100.0 1.9E-31 6.3E-36 216.7 23.0 248 19-297 6-281 (342)
104 1pgu_A Actin interacting prote 100.0 1.7E-30 6E-35 226.9 30.3 254 4-297 39-327 (615)
105 4ggc_A P55CDC, cell division c 100.0 2.8E-30 9.6E-35 207.6 27.2 252 3-297 44-314 (318)
106 3sfz_A APAF-1, apoptotic pepti 100.0 1.2E-30 4.3E-35 244.7 29.0 220 49-297 608-870 (1249)
107 4gq1_A NUP37; propeller, trans 100.0 1.1E-31 3.7E-36 222.3 18.5 214 51-296 131-387 (393)
108 1p22_A F-BOX/WD-repeat protein 100.0 1.5E-29 5E-34 212.4 29.6 224 21-297 130-364 (435)
109 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.2E-30 1.1E-34 217.3 25.5 203 56-297 4-270 (450)
110 1yfq_A Cell cycle arrest prote 100.0 5.3E-30 1.8E-34 208.1 25.6 240 3-290 32-315 (342)
111 3vu4_A KMHSV2; beta-propeller 100.0 9.7E-30 3.3E-34 207.8 26.7 266 11-297 6-335 (355)
112 3lrv_A PRE-mRNA-splicing facto 100.0 3.6E-30 1.2E-34 209.5 21.1 198 56-297 76-291 (343)
113 3f3f_A Nucleoporin SEH1; struc 100.0 1.7E-29 6E-34 205.1 25.1 206 18-234 5-338 (351)
114 2oaj_A Protein SNI1; WD40 repe 100.0 1.2E-29 4E-34 229.6 25.3 247 20-296 13-310 (902)
115 4h5i_A Guanine nucleotide-exch 100.0 3.3E-29 1.1E-33 205.4 24.6 194 22-234 131-344 (365)
116 3vu4_A KMHSV2; beta-propeller 100.0 3.8E-29 1.3E-33 204.3 24.4 208 48-297 11-270 (355)
117 4gga_A P55CDC, cell division c 100.0 8.2E-28 2.8E-32 200.9 28.7 206 51-297 142-352 (420)
118 2j04_A TAU60, YPL007P, hypothe 100.0 9.2E-29 3.2E-33 207.1 20.3 223 21-297 12-253 (588)
119 3lrv_A PRE-mRNA-splicing facto 100.0 2.3E-28 7.7E-33 198.9 22.0 241 3-294 57-329 (343)
120 2w18_A PALB2, fancn, partner a 100.0 9.7E-28 3.3E-32 189.3 20.6 192 8-231 139-355 (356)
121 1l0q_A Surface layer protein; 100.0 2.1E-26 7.1E-31 190.5 29.7 246 3-297 11-274 (391)
122 4gq1_A NUP37; propeller, trans 100.0 2.9E-28 9.8E-33 201.8 18.5 220 55-297 88-347 (393)
123 3bws_A Protein LP49; two-domai 100.0 3E-26 1E-30 192.0 29.7 247 4-297 144-431 (433)
124 4ggc_A P55CDC, cell division c 100.0 2.9E-25 9.8E-30 178.3 28.2 205 52-297 63-272 (318)
125 3bws_A Protein LP49; two-domai 99.9 2.7E-25 9.3E-30 186.2 24.8 234 17-297 116-389 (433)
126 1l0q_A Surface layer protein; 99.9 2.9E-24 9.9E-29 177.6 28.0 203 48-297 24-232 (391)
127 2hqs_A Protein TOLB; TOLB, PAL 99.9 6.6E-24 2.3E-28 176.7 27.2 248 5-297 94-386 (415)
128 2oit_A Nucleoporin 214KDA; NH2 99.9 4.8E-24 1.7E-28 178.2 19.9 207 56-297 36-277 (434)
129 2oit_A Nucleoporin 214KDA; NH2 99.9 3.3E-22 1.1E-26 167.2 26.2 163 54-234 90-279 (434)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 7E-22 2.4E-26 164.5 25.2 228 4-272 159-409 (415)
131 2ojh_A Uncharacterized protein 99.9 9.6E-22 3.3E-26 155.8 23.1 207 48-297 33-257 (297)
132 2ojh_A Uncharacterized protein 99.9 3.5E-22 1.2E-26 158.3 18.3 247 3-289 21-293 (297)
133 3u4y_A Uncharacterized protein 99.9 4.4E-21 1.5E-25 154.9 24.2 261 3-297 19-303 (331)
134 1ri6_A Putative isomerase YBHE 99.9 7.4E-20 2.5E-24 148.2 27.2 258 4-297 15-307 (343)
135 1ri6_A Putative isomerase YBHE 99.9 3.6E-20 1.2E-24 150.0 25.0 213 54-297 35-261 (343)
136 3hfq_A Uncharacterized protein 99.9 1.1E-19 3.8E-24 147.8 27.4 213 51-297 80-316 (347)
137 1nir_A Nitrite reductase; hemo 99.9 2.6E-20 8.8E-25 159.8 23.6 260 4-297 159-457 (543)
138 2ecf_A Dipeptidyl peptidase IV 99.9 5.1E-21 1.8E-25 170.8 19.6 249 5-297 65-412 (741)
139 3hfq_A Uncharacterized protein 99.9 6.2E-19 2.1E-23 143.4 28.5 217 53-297 36-270 (347)
140 1nir_A Nitrite reductase; hemo 99.9 3.8E-20 1.3E-24 158.8 21.4 195 63-297 144-354 (543)
141 2z3z_A Dipeptidyl aminopeptida 99.9 3.6E-20 1.2E-24 164.5 21.6 232 25-296 82-387 (706)
142 3u4y_A Uncharacterized protein 99.9 2.7E-19 9.1E-24 144.5 24.2 210 49-297 33-251 (331)
143 3vgz_A Uncharacterized protein 99.9 9.7E-19 3.3E-23 142.3 27.4 238 5-288 70-334 (353)
144 3vgz_A Uncharacterized protein 99.9 4.7E-19 1.6E-23 144.2 24.8 207 55-297 39-261 (353)
145 2ecf_A Dipeptidyl peptidase IV 99.9 3.7E-20 1.3E-24 165.3 19.5 201 56-297 36-320 (741)
146 1xfd_A DIP, dipeptidyl aminope 99.9 7.5E-20 2.6E-24 162.9 21.1 253 3-297 36-392 (723)
147 1pby_B Quinohemoprotein amine 99.8 3.8E-19 1.3E-23 143.6 21.9 195 58-297 35-309 (337)
148 1xfd_A DIP, dipeptidyl aminope 99.8 2E-20 6.8E-25 166.6 13.4 200 58-297 18-288 (723)
149 1k32_A Tricorn protease; prote 99.8 6.2E-19 2.1E-23 162.8 21.8 193 55-295 294-499 (1045)
150 2z3z_A Dipeptidyl aminopeptida 99.8 1.8E-18 6.1E-23 153.6 23.9 253 5-297 102-434 (706)
151 1k32_A Tricorn protease; prote 99.8 2.3E-18 7.8E-23 159.1 24.6 231 19-297 331-636 (1045)
152 3scy_A Hypothetical bacterial 99.8 7.8E-17 2.7E-21 131.7 29.7 213 54-297 97-336 (361)
153 1jmx_B Amine dehydrogenase; ox 99.8 2.2E-18 7.5E-23 139.9 20.3 197 58-297 44-324 (349)
154 3o4h_A Acylamino-acid-releasin 99.8 4.2E-19 1.4E-23 154.3 16.3 200 56-296 21-274 (582)
155 3scy_A Hypothetical bacterial 99.8 1.8E-16 6E-21 129.6 30.3 215 55-297 48-290 (361)
156 3o4h_A Acylamino-acid-releasin 99.8 5.8E-18 2E-22 147.1 20.4 237 3-295 43-312 (582)
157 1jof_A Carboxy-CIS,CIS-muconat 99.8 8.6E-17 2.9E-21 131.7 22.2 207 59-297 85-340 (365)
158 1z68_A Fibroblast activation p 99.8 3.5E-18 1.2E-22 152.0 14.7 196 61-295 20-284 (719)
159 1jmx_B Amine dehydrogenase; ox 99.8 2.4E-17 8.2E-22 133.8 17.3 154 61-235 4-177 (349)
160 3azo_A Aminopeptidase; POP fam 99.8 5.3E-16 1.8E-20 136.8 26.7 212 49-296 117-365 (662)
161 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.3E-16 8E-21 129.1 22.7 210 55-297 38-290 (365)
162 3fvz_A Peptidyl-glycine alpha- 99.8 7.9E-16 2.7E-20 124.1 24.1 203 55-297 89-321 (329)
163 1z68_A Fibroblast activation p 99.8 1.3E-17 4.5E-22 148.4 14.6 204 58-294 61-340 (719)
164 1pby_B Quinohemoprotein amine 99.7 1.6E-16 5.5E-21 128.2 18.2 144 69-235 2-165 (337)
165 4a5s_A Dipeptidyl peptidase 4 99.7 7.2E-17 2.5E-21 144.0 16.7 152 58-232 18-201 (740)
166 3pe7_A Oligogalacturonate lyas 99.7 7.3E-16 2.5E-20 127.0 20.3 208 48-297 22-272 (388)
167 1q7f_A NHL, brain tumor CG1071 99.7 8.9E-15 3E-19 115.5 25.5 200 55-297 75-279 (286)
168 3fvz_A Peptidyl-glycine alpha- 99.7 3.8E-15 1.3E-19 120.1 22.3 217 44-296 14-275 (329)
169 3azo_A Aminopeptidase; POP fam 99.7 2.9E-16 9.8E-21 138.5 16.5 211 49-297 60-322 (662)
170 4a5s_A Dipeptidyl peptidase 4 99.7 2.8E-15 9.6E-20 133.7 22.4 173 49-235 49-296 (740)
171 1q7f_A NHL, brain tumor CG1071 99.7 6.9E-14 2.4E-18 110.4 25.3 200 54-296 27-236 (286)
172 3pe7_A Oligogalacturonate lyas 99.7 4.6E-15 1.6E-19 122.2 19.0 244 10-297 16-328 (388)
173 2xdw_A Prolyl endopeptidase; a 99.7 3.7E-14 1.3E-18 126.0 24.8 209 54-296 122-364 (710)
174 1xip_A Nucleoporin NUP159; bet 99.7 1.4E-14 4.8E-19 117.7 19.7 176 58-284 39-230 (388)
175 2dg1_A DRP35, lactonase; beta 99.7 1.6E-13 5.4E-18 110.7 25.7 213 48-296 36-261 (333)
176 2gop_A Trilobed protease; beta 99.6 4.9E-14 1.7E-18 114.3 20.8 189 57-297 59-290 (347)
177 2bkl_A Prolyl endopeptidase; m 99.6 4.7E-14 1.6E-18 125.0 22.2 209 54-297 118-348 (695)
178 3c5m_A Oligogalacturonate lyas 99.6 4E-15 1.4E-19 122.8 13.7 239 10-297 16-328 (396)
179 2gop_A Trilobed protease; beta 99.6 3.2E-13 1.1E-17 109.5 24.5 193 50-296 98-329 (347)
180 3e5z_A Putative gluconolactona 99.6 1.4E-13 4.7E-18 109.3 21.5 205 48-296 19-244 (296)
181 3c5m_A Oligogalacturonate lyas 99.6 2.3E-15 8E-20 124.2 11.4 199 59-297 38-272 (396)
182 2oiz_A Aromatic amine dehydrog 99.6 4E-13 1.4E-17 109.6 23.3 84 49-134 44-140 (361)
183 3e5z_A Putative gluconolactona 99.6 6.2E-13 2.1E-17 105.5 23.7 229 14-289 17-278 (296)
184 1rwi_B Serine/threonine-protei 99.6 1.7E-13 5.7E-18 107.1 19.8 198 56-297 66-263 (270)
185 2xdw_A Prolyl endopeptidase; a 99.6 2E-12 6.8E-17 114.9 24.8 209 59-297 173-413 (710)
186 1yr2_A Prolyl oligopeptidase; 99.6 2.1E-12 7.2E-17 115.3 24.4 207 55-297 161-392 (741)
187 1rwi_B Serine/threonine-protei 99.5 1.1E-12 3.7E-17 102.5 19.8 196 58-297 25-221 (270)
188 3no2_A Uncharacterized protein 99.5 9.6E-13 3.3E-17 103.1 19.4 184 67-296 4-193 (276)
189 2dg1_A DRP35, lactonase; beta 99.5 1.9E-13 6.6E-18 110.2 15.9 195 57-296 6-211 (333)
190 2bkl_A Prolyl endopeptidase; m 99.5 1.8E-12 6E-17 114.9 22.1 235 22-297 118-396 (695)
191 3no2_A Uncharacterized protein 99.5 5.3E-12 1.8E-16 98.9 21.4 192 48-285 27-230 (276)
192 2oiz_A Aromatic amine dehydrog 99.5 9E-12 3.1E-16 101.6 23.2 235 5-272 32-359 (361)
193 3dsm_A Uncharacterized protein 99.5 1.6E-11 5.6E-16 98.7 22.0 205 48-297 76-301 (328)
194 1qks_A Cytochrome CD1 nitrite 99.5 2E-11 6.7E-16 104.9 23.5 185 80-297 174-372 (567)
195 2z2n_A Virginiamycin B lyase; 99.5 1E-10 3.6E-15 92.4 25.8 200 53-296 11-211 (299)
196 3g4e_A Regucalcin; six bladed 99.4 1.7E-10 5.9E-15 91.4 25.3 193 55-288 52-263 (297)
197 2z2n_A Virginiamycin B lyase; 99.4 2.4E-10 8.1E-15 90.3 26.0 198 55-296 55-253 (299)
198 3dsm_A Uncharacterized protein 99.4 5.3E-11 1.8E-15 95.8 20.8 192 57-297 44-252 (328)
199 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.3E-10 4.4E-15 92.7 22.5 199 55-297 69-298 (314)
200 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 2.2E-10 7.4E-15 91.4 23.5 208 50-297 11-255 (314)
201 3iuj_A Prolyl endopeptidase; h 99.4 4.5E-11 1.5E-15 105.8 21.2 207 54-296 126-357 (693)
202 3hrp_A Uncharacterized protein 99.4 1.8E-10 6.1E-15 95.4 22.8 213 57-296 131-352 (409)
203 1xip_A Nucleoporin NUP159; bet 99.4 3.1E-11 1.1E-15 98.1 17.2 137 54-219 86-230 (388)
204 1yr2_A Prolyl oligopeptidase; 99.4 6.6E-10 2.2E-14 99.2 25.6 203 60-297 212-440 (741)
205 1qks_A Cytochrome CD1 nitrite 99.4 2.7E-09 9.3E-14 91.7 28.3 208 49-297 190-420 (567)
206 3g4e_A Regucalcin; six bladed 99.3 2.6E-09 8.9E-14 84.6 25.6 204 55-296 11-227 (297)
207 2qc5_A Streptogramin B lactona 99.3 2.5E-09 8.6E-14 84.4 25.5 199 54-296 17-216 (300)
208 2qc5_A Streptogramin B lactona 99.3 3.1E-09 1.1E-13 83.9 25.7 198 55-296 60-258 (300)
209 2mad_H Methylamine dehydrogena 99.3 3.4E-09 1.2E-13 86.6 25.2 83 49-134 60-156 (373)
210 3dr2_A Exported gluconolactona 99.3 2.3E-09 7.7E-14 85.3 22.3 193 49-289 78-298 (305)
211 2qe8_A Uncharacterized protein 99.3 1.6E-09 5.5E-14 87.6 21.0 209 57-296 17-276 (343)
212 2ghs_A AGR_C_1268P; regucalcin 99.3 1.3E-08 4.6E-13 81.6 26.1 181 55-272 88-283 (326)
213 3dr2_A Exported gluconolactona 99.2 2.6E-09 8.8E-14 85.0 21.0 205 48-296 36-265 (305)
214 3hrp_A Uncharacterized protein 99.2 3.8E-09 1.3E-13 87.5 22.2 212 62-297 176-409 (409)
215 2iwa_A Glutamine cyclotransfer 99.2 4.1E-09 1.4E-13 81.0 19.6 199 59-297 23-236 (266)
216 2ghs_A AGR_C_1268P; regucalcin 99.2 1.5E-08 5.2E-13 81.3 23.7 197 58-296 50-258 (326)
217 3c75_H MADH, methylamine dehyd 99.2 7.3E-09 2.5E-13 85.4 20.5 212 48-297 111-401 (426)
218 2mad_H Methylamine dehydrogena 99.2 2.7E-08 9.3E-13 81.2 23.8 146 64-234 28-196 (373)
219 2qe8_A Uncharacterized protein 99.1 4.3E-09 1.5E-13 85.1 17.1 202 54-290 64-313 (343)
220 3iuj_A Prolyl endopeptidase; h 99.1 2.4E-08 8.3E-13 88.4 23.2 197 60-296 178-403 (693)
221 2ece_A 462AA long hypothetical 99.1 2.2E-08 7.5E-13 82.0 20.3 196 66-296 93-350 (462)
222 3sjl_D Methylamine dehydrogena 99.1 3.2E-08 1.1E-12 80.3 21.2 202 59-297 139-362 (386)
223 3sjl_D Methylamine dehydrogena 99.1 2.3E-08 8E-13 81.0 20.2 152 62-233 38-208 (386)
224 2hz6_A Endoplasmic reticulum t 99.1 9.7E-12 3.3E-16 101.7 -1.4 142 67-235 8-151 (369)
225 3nol_A Glutamine cyclotransfer 99.0 1.3E-07 4.5E-12 71.9 19.8 194 49-285 34-243 (262)
226 3c75_H MADH, methylamine dehyd 99.0 5.4E-08 1.8E-12 80.3 17.9 148 66-233 82-248 (426)
227 1npe_A Nidogen, entactin; glyc 99.0 3E-06 1E-10 65.8 26.7 197 57-296 36-236 (267)
228 1mda_H Methylamine dehydrogena 99.0 5.4E-08 1.8E-12 78.9 17.1 219 46-297 56-345 (368)
229 3qqz_A Putative uncharacterize 98.9 3.8E-06 1.3E-10 64.2 25.0 209 50-294 20-249 (255)
230 2ece_A 462AA long hypothetical 98.9 5.1E-07 1.7E-11 74.1 20.6 162 58-233 139-352 (462)
231 3nok_A Glutaminyl cyclase; bet 98.9 7.5E-07 2.6E-11 67.8 20.0 188 54-286 50-254 (268)
232 3mbr_X Glutamine cyclotransfer 98.9 1.2E-06 4E-11 66.1 20.7 192 54-286 16-223 (243)
233 2xe4_A Oligopeptidase B; hydro 98.9 8.8E-07 3E-11 79.1 23.7 166 54-232 170-353 (751)
234 1fwx_A Nitrous oxide reductase 98.9 1.9E-07 6.5E-12 79.2 17.9 200 66-297 99-360 (595)
235 1kb0_A Quinohemoprotein alcoho 98.7 1.1E-06 3.6E-11 77.6 19.2 182 60-272 246-531 (677)
236 1yiq_A Quinohemoprotein alcoho 98.7 1.1E-06 3.6E-11 77.7 18.8 176 61-272 239-529 (689)
237 1npe_A Nidogen, entactin; glyc 98.7 2.3E-05 8E-10 60.6 24.0 185 69-296 2-196 (267)
238 1fwx_A Nitrous oxide reductase 98.6 1.5E-06 5.2E-11 73.8 15.9 164 57-233 134-361 (595)
239 1kb0_A Quinohemoprotein alcoho 98.6 3.7E-06 1.3E-10 74.1 17.7 102 82-190 189-353 (677)
240 3hxj_A Pyrrolo-quinoline quino 98.6 1.3E-06 4.6E-11 69.7 13.8 188 55-296 135-322 (330)
241 1yiq_A Quinohemoprotein alcoho 98.6 5.5E-06 1.9E-10 73.2 18.1 101 81-188 181-343 (689)
242 2fp8_A Strictosidine synthase; 98.5 6.1E-05 2.1E-09 60.1 22.5 194 58-297 81-312 (322)
243 2hz6_A Endoplasmic reticulum t 98.5 1.2E-08 4E-13 83.4 0.7 139 114-297 8-148 (369)
244 2iwa_A Glutamine cyclotransfer 98.5 4.1E-06 1.4E-10 64.4 14.4 148 68-234 75-238 (266)
245 3v65_B Low-density lipoprotein 98.5 0.00017 5.9E-09 59.0 24.9 160 56-233 115-277 (386)
246 2fp8_A Strictosidine synthase; 98.5 3.8E-05 1.3E-09 61.3 20.6 156 57-233 19-216 (322)
247 3v64_C Agrin; beta propeller, 98.4 0.00035 1.2E-08 56.4 27.3 160 56-233 72-234 (349)
248 3hxj_A Pyrrolo-quinoline quino 98.4 6.4E-06 2.2E-10 65.8 14.0 136 68-231 107-242 (330)
249 1mda_H Methylamine dehydrogena 98.4 4.3E-06 1.5E-10 67.8 12.7 127 84-233 47-194 (368)
250 1ijq_A LDL receptor, low-densi 98.4 0.00039 1.3E-08 55.3 26.6 160 56-233 29-195 (316)
251 3v64_C Agrin; beta propeller, 98.4 0.00023 7.7E-09 57.5 22.4 196 57-296 34-232 (349)
252 3p5b_L Low density lipoprotein 98.4 0.00066 2.2E-08 55.9 27.2 162 54-233 109-277 (400)
253 3q7m_A Lipoprotein YFGL, BAMB; 98.3 6.7E-05 2.3E-09 61.1 18.5 178 69-295 189-375 (376)
254 2p4o_A Hypothetical protein; p 98.3 0.0007 2.4E-08 53.5 27.0 206 49-295 25-239 (306)
255 3q7m_A Lipoprotein YFGL, BAMB; 98.3 7.5E-05 2.6E-09 60.9 17.8 146 68-235 53-209 (376)
256 3v65_B Low-density lipoprotein 98.3 0.00029 9.8E-09 57.7 21.2 194 59-296 79-275 (386)
257 3nol_A Glutamine cyclotransfer 98.3 4.7E-05 1.6E-09 58.0 14.7 135 67-221 95-244 (262)
258 2xbg_A YCF48-like protein; pho 98.3 0.00051 1.7E-08 54.9 21.6 197 55-295 120-319 (327)
259 3mbr_X Glutamine cyclotransfer 98.3 0.00055 1.9E-08 51.6 19.8 135 68-221 74-223 (243)
260 3amr_A 3-phytase; beta-propell 98.2 0.00099 3.4E-08 53.0 21.1 186 82-296 49-261 (355)
261 4hw6_A Hypothetical protein, I 98.2 0.00089 3E-08 55.7 22.1 156 58-232 140-303 (433)
262 3nok_A Glutaminyl cyclase; bet 98.2 0.00017 5.8E-09 55.0 15.9 136 67-221 104-254 (268)
263 1kv9_A Type II quinohemoprotei 98.2 0.00018 6E-09 63.5 18.6 153 61-234 234-489 (668)
264 3tc9_A Hypothetical hydrolase; 98.2 0.002 7E-08 53.5 24.9 125 51-183 173-301 (430)
265 3tc9_A Hypothetical hydrolase; 98.1 0.00025 8.7E-09 58.9 17.7 155 58-232 138-300 (430)
266 3sov_A LRP-6, low-density lipo 98.1 0.0018 6E-08 51.5 22.5 159 57-233 35-197 (318)
267 2p9w_A MAL S 1 allergenic prot 98.1 0.00079 2.7E-08 53.1 19.2 166 53-233 9-215 (334)
268 1ijq_A LDL receptor, low-densi 98.1 0.002 6.7E-08 51.2 23.1 182 82-296 9-193 (316)
269 3pbp_A Nucleoporin NUP82; beta 98.1 0.0008 2.7E-08 54.8 18.7 153 65-229 29-208 (452)
270 3m0c_C LDL receptor, low-densi 98.0 0.0062 2.1E-07 54.5 26.7 163 54-234 421-590 (791)
271 2xe4_A Oligopeptidase B; hydro 98.0 0.00028 9.6E-09 63.1 17.1 115 105-234 175-305 (751)
272 3p5b_L Low density lipoprotein 98.0 0.0023 7.8E-08 52.6 21.3 181 82-296 91-275 (400)
273 3sov_A LRP-6, low-density lipo 98.0 0.003 1E-07 50.2 22.0 178 82-296 12-195 (318)
274 1kv9_A Type II quinohemoprotei 98.0 0.00023 7.8E-09 62.7 16.0 100 82-188 177-338 (668)
275 1n7d_A LDL receptor, low-densi 98.0 5.1E-05 1.8E-09 67.1 11.6 159 57-233 406-571 (699)
276 4a2l_A BT_4663, two-component 98.0 0.0086 2.9E-07 54.0 25.9 177 57-272 357-554 (795)
277 2p4o_A Hypothetical protein; p 98.0 0.0036 1.2E-07 49.4 22.1 159 56-232 71-241 (306)
278 1k3i_A Galactose oxidase precu 98.0 0.00073 2.5E-08 59.5 18.3 119 61-185 190-325 (656)
279 4hw6_A Hypothetical protein, I 98.0 0.0053 1.8E-07 51.0 23.1 228 50-297 175-432 (433)
280 4a2l_A BT_4663, two-component 98.0 0.0059 2E-07 55.0 24.3 179 57-272 406-597 (795)
281 2p9w_A MAL S 1 allergenic prot 97.9 0.00083 2.9E-08 53.0 15.6 164 104-297 13-214 (334)
282 1k3i_A Galactose oxidase precu 97.9 0.0011 3.8E-08 58.3 18.3 85 45-134 230-323 (656)
283 2ad6_A Methanol dehydrogenase 97.9 0.0013 4.4E-08 56.8 18.2 157 61-234 239-495 (571)
284 3v9f_A Two-component system se 97.9 0.0064 2.2E-07 54.7 23.1 193 57-295 363-565 (781)
285 3kya_A Putative phosphatase; s 97.8 0.01 3.5E-07 49.9 22.8 162 58-233 140-341 (496)
286 1flg_A Protein (quinoprotein e 97.8 0.0012 4.1E-08 57.1 16.3 53 173-234 465-517 (582)
287 3qqz_A Putative uncharacterize 97.8 0.0068 2.3E-07 46.3 21.3 172 98-296 21-202 (255)
288 3m0c_C LDL receptor, low-densi 97.8 0.0093 3.2E-07 53.4 21.9 181 82-296 403-587 (791)
289 3v9f_A Two-component system se 97.8 0.019 6.3E-07 51.7 24.2 202 57-295 211-433 (781)
290 1w6s_A Methanol dehydrogenase 97.7 0.005 1.7E-07 53.3 18.6 74 61-135 245-343 (599)
291 2ad6_A Methanol dehydrogenase 97.7 0.0033 1.1E-07 54.3 17.5 29 162-190 311-342 (571)
292 3s94_A LRP-6, low-density lipo 97.6 0.031 1.1E-06 48.7 22.8 160 56-234 39-203 (619)
293 2xbg_A YCF48-like protein; pho 97.6 0.02 6.8E-07 45.6 21.4 150 56-230 79-231 (327)
294 1w6s_A Methanol dehydrogenase 97.5 0.0084 2.9E-07 52.0 17.5 101 82-190 181-349 (599)
295 3pbp_A Nucleoporin NUP82; beta 97.5 0.0027 9.2E-08 51.8 13.4 116 58-179 67-208 (452)
296 2xn4_A Kelch-like protein 2; s 97.5 0.023 7.9E-07 44.5 19.3 151 67-234 61-230 (302)
297 1tl2_A L10, protein (tachylect 97.5 0.0089 3.1E-07 44.1 14.1 110 57-178 41-158 (236)
298 2vpj_A Kelch-like protein 12; 97.4 0.026 8.7E-07 44.2 19.1 151 67-234 62-232 (301)
299 3sre_A PON1, serum paraoxonase 97.3 0.042 1.4E-06 44.2 19.0 162 105-297 51-251 (355)
300 3ii7_A Kelch-like protein 7; p 97.3 0.044 1.5E-06 42.9 18.5 150 67-234 55-226 (306)
301 4a0p_A LRP6, LRP-6, low-densit 97.2 0.086 3E-06 46.0 25.2 159 57-234 37-198 (628)
302 3sre_A PON1, serum paraoxonase 97.2 0.057 2E-06 43.4 22.7 163 58-233 51-252 (355)
303 1n7d_A LDL receptor, low-densi 97.2 0.00058 2E-08 60.5 6.5 182 82-296 385-569 (699)
304 3amr_A 3-phytase; beta-propell 97.0 0.091 3.1E-06 41.9 22.1 167 57-232 68-262 (355)
305 1zgk_A Kelch-like ECH-associat 97.0 0.08 2.7E-06 41.6 16.6 151 67-234 70-241 (308)
306 2ism_A Putative oxidoreductase 96.9 0.13 4.5E-06 41.3 21.7 114 49-171 23-153 (352)
307 1flg_A Protein (quinoprotein e 96.8 0.019 6.5E-07 49.7 12.6 54 163-222 496-549 (582)
308 3ii7_A Kelch-like protein 7; p 96.8 0.12 4.1E-06 40.4 18.2 106 68-185 12-129 (306)
309 3ei3_A DNA damage-binding prot 96.8 0.35 1.2E-05 45.5 26.9 176 83-296 807-997 (1158)
310 1zgk_A Kelch-like ECH-associat 96.8 0.13 4.4E-06 40.4 17.2 150 67-234 24-194 (308)
311 2vpj_A Kelch-like protein 12; 96.7 0.088 3E-06 41.1 14.9 151 67-234 112-279 (301)
312 3kya_A Putative phosphatase; s 96.7 0.22 7.6E-06 41.9 24.2 124 58-183 187-341 (496)
313 2xn4_A Kelch-like protein 2; s 96.7 0.073 2.5E-06 41.6 14.0 151 67-234 108-277 (302)
314 3das_A Putative oxidoreductase 96.6 0.22 7.4E-06 39.9 18.9 118 49-171 24-158 (347)
315 2g8s_A Glucose/sorbosone dehyd 96.5 0.24 8.1E-06 39.8 16.4 109 56-171 17-148 (353)
316 1cru_A Protein (soluble quinop 96.5 0.29 9.9E-06 40.9 19.7 117 50-171 20-162 (454)
317 4a0p_A LRP6, LRP-6, low-densit 96.5 0.39 1.3E-05 41.9 25.6 157 57-233 340-508 (628)
318 3ei3_A DNA damage-binding prot 96.4 0.61 2.1E-05 43.9 24.9 227 44-294 815-1058(1158)
319 3s94_A LRP-6, low-density lipo 96.4 0.45 1.5E-05 41.5 24.0 157 58-234 350-511 (619)
320 2ism_A Putative oxidoreductase 96.3 0.3 1E-05 39.2 20.1 67 56-122 74-153 (352)
321 2zwa_A Leucine carboxyl methyl 96.0 0.68 2.3E-05 41.0 17.7 157 66-235 396-579 (695)
322 4asc_A Kelch repeat and BTB do 95.8 0.49 1.7E-05 37.1 20.1 153 65-234 43-222 (315)
323 2xzh_A Clathrin heavy chain 1; 95.6 0.66 2.3E-05 36.7 24.0 203 63-297 73-289 (365)
324 3a9g_A Putative uncharacterize 95.2 0.97 3.3E-05 36.3 23.7 115 50-171 22-153 (354)
325 2zwa_A Leucine carboxyl methyl 95.0 0.92 3.2E-05 40.2 15.0 157 67-234 451-636 (695)
326 2uvk_A YJHT; unknown function, 94.8 1.2 4E-05 35.6 15.3 56 67-124 65-128 (357)
327 2uvk_A YJHT; unknown function, 94.8 1.2 4.2E-05 35.5 16.6 95 67-173 19-128 (357)
328 2woz_A Kelch repeat and BTB do 94.7 1.2 4.2E-05 34.8 14.1 110 67-185 109-233 (318)
329 3a9g_A Putative uncharacterize 94.4 1.6 5.4E-05 35.0 20.6 205 57-286 73-330 (354)
330 1xi4_A Clathrin heavy chain; a 94.3 2.3 7.8E-05 40.8 15.8 204 62-297 71-288 (1630)
331 1tl2_A L10, protein (tachylect 93.8 1.5 5E-05 32.6 12.0 103 60-175 91-202 (236)
332 2xzh_A Clathrin heavy chain 1; 93.8 2 6.8E-05 34.0 23.1 178 48-234 139-333 (365)
333 1cru_A Protein (soluble quinop 93.7 2.6 9E-05 35.1 15.6 55 153-208 27-87 (454)
334 4asc_A Kelch repeat and BTB do 93.6 2 6.9E-05 33.5 19.0 137 83-234 13-175 (315)
335 2woz_A Kelch repeat and BTB do 93.6 2.1 7.1E-05 33.5 18.9 154 64-234 53-232 (318)
336 3s25_A Hypothetical 7-bladed b 93.3 2.3 7.9E-05 33.2 18.7 146 61-233 57-216 (302)
337 1bpo_A Protein (clathrin); cla 93.3 3 0.0001 34.5 22.8 158 57-234 106-290 (494)
338 3sbq_A Nitrous-oxide reductase 93.3 0.9 3.1E-05 38.7 10.4 78 105-183 324-408 (638)
339 1xi4_A Clathrin heavy chain; a 93.0 6.9 0.00023 37.7 17.2 160 57-236 106-292 (1630)
340 3s25_A Hypothetical 7-bladed b 92.9 2.7 9.2E-05 32.8 15.3 137 66-234 23-177 (302)
341 3sbq_A Nitrous-oxide reductase 92.4 1.6 5.5E-05 37.3 10.7 110 57-171 323-453 (638)
342 3qhy_B Beta-lactamase inhibito 92.1 3.2 0.00011 32.0 17.6 129 82-234 80-208 (282)
343 2wg3_C Hedgehog-interacting pr 92.0 4.8 0.00016 33.6 14.7 110 57-172 14-158 (463)
344 3qhy_B Beta-lactamase inhibito 91.4 3.9 0.00013 31.5 15.4 128 82-233 41-168 (282)
345 2g8s_A Glucose/sorbosone dehyd 90.8 5.3 0.00018 31.9 21.9 76 199-296 272-350 (353)
346 3das_A Putative oxidoreductase 90.7 5.5 0.00019 31.8 16.6 56 152-208 31-90 (347)
347 1bpo_A Protein (clathrin); cla 90.6 6.5 0.00022 32.6 25.5 219 6-234 88-332 (494)
348 2wg3_C Hedgehog-interacting pr 90.3 7.1 0.00024 32.6 16.0 55 154-208 15-79 (463)
349 4gq2_M Nucleoporin NUP120; bet 86.8 13 0.00044 34.3 13.1 37 154-190 237-273 (950)
350 3ott_A Two-component system se 86.4 18 0.0006 32.3 23.3 148 57-229 146-303 (758)
351 2be1_A Serine/threonine-protei 83.7 2.5 8.5E-05 33.7 6.1 109 70-190 12-137 (339)
352 3no0_A DNA gyrase subunit A; D 82.4 15 0.0005 28.2 23.8 124 103-234 67-197 (276)
353 4a9v_A PHOX; hydrolase, beta-p 78.2 13 0.00043 32.0 8.7 65 57-121 476-548 (592)
354 3ott_A Two-component system se 77.7 38 0.0013 30.1 24.7 152 57-233 63-220 (758)
355 4fhn_B Nucleoporin NUP120; pro 71.4 8.1 0.00028 36.5 6.6 37 154-190 239-275 (1139)
356 3uc1_A DNA gyrase subunit A; D 71.3 36 0.0012 26.8 22.9 165 57-233 95-279 (327)
357 2be1_A Serine/threonine-protei 70.9 31 0.0011 27.4 8.9 112 116-236 11-133 (339)
358 3zwu_A Alkaline phosphatase PH 69.7 18 0.00062 31.3 7.8 64 58-121 477-548 (592)
359 3q6k_A 43.2 kDa salivary prote 65.9 52 0.0018 26.6 19.3 166 57-233 87-306 (381)
360 4fhn_B Nucleoporin NUP120; pro 59.5 13 0.00046 35.0 5.6 29 262-297 239-267 (1139)
361 3zwu_A Alkaline phosphatase PH 59.3 45 0.0015 28.9 8.3 58 106-170 478-548 (592)
362 1suu_A DNA gyrase subunit A; t 55.7 71 0.0024 24.9 23.6 203 66-296 6-229 (312)
363 3l6v_A GYRA, DNA gyrase subuni 55.5 80 0.0027 25.4 18.6 156 113-297 5-179 (370)
364 3f7f_A Nucleoporin NUP120; nuc 52.2 23 0.00079 31.4 5.4 35 154-190 223-257 (729)
365 1zvt_A Topoisomerase IV subuni 52.2 73 0.0025 24.0 11.1 80 103-183 83-163 (256)
366 4gq2_M Nucleoporin NUP120; bet 51.6 1.5E+02 0.0051 27.4 19.9 30 261-297 236-265 (950)
367 4a9v_A PHOX; hydrolase, beta-p 50.2 89 0.003 27.0 8.4 60 105-171 477-549 (592)
368 3q6k_A 43.2 kDa salivary prote 49.8 1E+02 0.0035 24.9 15.7 130 152-296 151-304 (381)
369 3b7f_A Glycosyl hydrolase, BNR 49.3 1E+02 0.0034 24.7 20.7 67 153-224 177-254 (394)
370 3f7f_A Nucleoporin NUP120; nuc 48.9 30 0.001 30.7 5.6 37 57-100 222-258 (729)
371 1wp5_A Topoisomerase IV; broke 48.6 96 0.0033 24.3 24.9 123 104-233 92-225 (323)
372 1sqj_A OXG-RCBH, oligoxylogluc 47.2 1.6E+02 0.0055 26.5 16.4 114 103-225 14-144 (789)
373 1zvt_A Topoisomerase IV subuni 46.9 90 0.0031 23.5 14.5 105 117-234 4-115 (256)
374 3uc1_A DNA gyrase subunit A; D 44.9 1.1E+02 0.0038 24.0 25.8 125 103-234 94-229 (327)
375 3al9_A Plexin-A2; beta-propell 43.0 85 0.0029 26.8 7.4 72 106-178 402-476 (539)
376 3al9_A Plexin-A2; beta-propell 41.5 1.1E+02 0.0039 26.0 8.0 69 154-228 401-476 (539)
377 1q47_A Semaphorin 3A; beta pro 40.2 1.2E+02 0.0041 25.6 7.8 69 154-228 405-487 (495)
378 4gz8_A Semaphorin-3A; multi-do 36.4 1.7E+02 0.0059 25.7 8.4 62 117-178 431-495 (667)
379 1q47_A Semaphorin 3A; beta pro 35.8 1.3E+02 0.0044 25.4 7.4 73 106-178 406-487 (495)
380 4gz8_A Semaphorin-3A; multi-do 30.8 2.2E+02 0.0077 25.1 8.2 58 165-228 430-495 (667)
381 3oky_B Putative uncharacterize 29.8 2.7E+02 0.0092 24.0 8.8 74 106-179 405-496 (565)
382 3nvq_A Semaphorin-7A; beta-pro 28.5 2.2E+02 0.0076 24.6 7.6 59 165-228 381-444 (590)
383 3no0_A DNA gyrase subunit A; D 28.2 2E+02 0.0067 21.9 22.0 165 56-233 67-246 (276)
384 1wp5_A Topoisomerase IV; broke 28.1 2.2E+02 0.0074 22.3 23.2 165 57-233 92-277 (323)
385 4hvt_A Ritya.17583.B, post-pro 28.0 3.2E+02 0.011 24.3 23.5 40 58-97 130-170 (711)
386 2cn3_A Xyloglucanase, beta-1,4 27.3 3.3E+02 0.011 24.2 14.0 163 104-294 23-225 (737)
387 3nvq_A Semaphorin-7A; beta-pro 25.9 3.3E+02 0.011 23.6 8.3 61 117-178 382-444 (590)
388 3ol2_B Plexin-B1; beta-propell 25.6 2.2E+02 0.0074 24.3 7.0 71 106-179 389-462 (528)
389 1zi0_A DNA gyrase subunit A; b 25.1 2.4E+02 0.0082 21.8 24.0 202 67-296 2-224 (307)
390 1suu_A DNA gyrase subunit A; t 25.0 2.4E+02 0.0082 21.8 25.7 124 104-234 100-232 (312)
391 3oky_B Putative uncharacterize 24.7 3.4E+02 0.011 23.4 9.0 71 154-229 404-496 (565)
392 1zi0_A DNA gyrase subunit A; b 21.7 2.8E+02 0.0096 21.4 26.2 124 103-233 94-226 (307)
393 1olz_A Semaphorin 4D; developm 21.1 4.2E+02 0.014 23.3 8.2 59 117-178 417-477 (663)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.5e-42 Score=285.63 Aligned_cols=252 Identities=21% Similarity=0.332 Sum_probs=223.4
Q ss_pred cccccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCE
Q 037555 2 YAATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKL 70 (298)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~ 70 (298)
.++.++.|+..+++.+..+.+|.+.|.++.|. |.+..++++ ++|+ .+..+.+|...|.+++|+|++.+
T Consensus 128 ~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~-~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~ 206 (410)
T 1vyh_C 128 EDATIKVWDYETGDFERTLKGHTDSVQDISFD-HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH 206 (410)
T ss_dssp SSSCEEEEETTTCCCCEEECCCSSCEEEEEEC-TTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSE
T ss_pred CCCeEEEEECCCCcEEEEEeccCCcEEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCE
Confidence 35678899999999999999999999999999 556666665 4663 46778899999999999999999
Q ss_pred EEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeec
Q 037555 71 VASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEA 150 (298)
Q Consensus 71 l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 150 (298)
|++++. |+.|++||+.+++.+..+.+|...|.++.|+|++.+|++++.|+.|++||+.. ......+..
T Consensus 207 l~s~s~-----D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~-------~~~~~~~~~ 274 (410)
T 1vyh_C 207 IVSASR-----DKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT-------KECKAELRE 274 (410)
T ss_dssp EEEEET-----TSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-------CCEEEEECC
T ss_pred EEEEeC-----CCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCC-------CceeeEecC
Confidence 999964 99999999999999999999999999999999999999999999999999987 556777889
Q ss_pred cCCceEEEEEccC--------------------CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555 151 HKRIIWSCSWNPF--------------------GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR 210 (298)
Q Consensus 151 ~~~~v~~~~~~~~--------------------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (298)
|...|.+++|+|+ +.+|++|+.|+.|++||++++..+. .+.+|...|.+++|+|++
T Consensus 275 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~v~~v~~~~~g- 350 (410)
T 1vyh_C 275 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM---TLVGHDNWVRGVLFHSGG- 350 (410)
T ss_dssp CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECSSS-
T ss_pred CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEE---EEECCCCcEEEEEEcCCC-
Confidence 9999999999996 6689999999999999999988776 666799999999999998
Q ss_pred cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCc
Q 037555 211 QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNT 290 (298)
Q Consensus 211 ~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~ 290 (298)
.+|++|+.|+.|++||+.+. .++..+ .+|...|++++|+|++ .+|++++.|++
T Consensus 351 ----~~l~s~s~D~~i~vwd~~~~-------------~~~~~~---~~h~~~v~~l~~~~~~-------~~l~sgs~D~~ 403 (410)
T 1vyh_C 351 ----KFILSCADDKTLRVWDYKNK-------------RCMKTL---NAHEHFVTSLDFHKTA-------PYVVTGSVDQT 403 (410)
T ss_dssp ----SCEEEEETTTEEEEECCTTS-------------CCCEEE---ECCSSCEEEEEECSSS-------SCEEEEETTSE
T ss_pred ----CEEEEEeCCCeEEEEECCCC-------------ceEEEE---cCCCCcEEEEEEcCCC-------CEEEEEeCCCc
Confidence 79999999999999999766 444443 4699999999999999 89999999999
Q ss_pred EEEeEec
Q 037555 291 VRVFQVN 297 (298)
Q Consensus 291 i~iw~~~ 297 (298)
|++|+++
T Consensus 404 i~vW~~r 410 (410)
T 1vyh_C 404 VKVWECR 410 (410)
T ss_dssp EEEEC--
T ss_pred EEEEeCC
Confidence 9999974
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.6e-41 Score=272.56 Aligned_cols=252 Identities=17% Similarity=0.227 Sum_probs=220.4
Q ss_pred ccccceeeeecCcc--cccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCC
Q 037555 3 AATRETVERHGNDG--LDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGK 69 (298)
Q Consensus 3 ~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~ 69 (298)
++.++.++..++.. ...+.+|...|.++.+.+ ....++++ ++|+ .+..+..|...+.+++|+|+++
T Consensus 57 D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~-~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~ 135 (321)
T 3ow8_A 57 DDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISH-TLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ 135 (321)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSS
T ss_pred CCCEEEEECCCCCeeeeeeeccCCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCC
Confidence 55677787776653 446899999999999984 45555554 4664 4677888999999999999999
Q ss_pred EEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEee
Q 037555 70 LVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQE 149 (298)
Q Consensus 70 ~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 149 (298)
+|++++ .++.|++|++++++....+..|...|.+++|+|++++|++++.||.|++||+++ .+.+..+.
T Consensus 136 ~l~~g~-----~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~-------~~~~~~~~ 203 (321)
T 3ow8_A 136 YLATGT-----HVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT-------GKLLHTLE 203 (321)
T ss_dssp EEEEEC-----TTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-------TEEEEEEC
T ss_pred EEEEEc-----CCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC-------CcEEEEEc
Confidence 999994 599999999999998888888999999999999999999999999999999987 56778888
Q ss_pred ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEE
Q 037555 150 AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELW 229 (298)
Q Consensus 150 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vw 229 (298)
.|..+|.+++|+|++++|++++.|+.|++||+++.+... .+.+|...|.+++|+|++ .+|++++.|+.|++|
T Consensus 204 ~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~sp~~-----~~l~s~s~D~~v~iw 275 (321)
T 3ow8_A 204 GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG---TLSGHASWVLNVAFCPDD-----THFVSSSSDKSVKVW 275 (321)
T ss_dssp CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTS-----SEEEEEETTSCEEEE
T ss_pred ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeE---EEcCCCCceEEEEECCCC-----CEEEEEeCCCcEEEE
Confidence 999999999999999999999999999999999887766 677899999999999998 799999999999999
Q ss_pred EeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEecC
Q 037555 230 SISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVNV 298 (298)
Q Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~~ 298 (298)
|+.++ .++..+ .+|...|.+++|+|++ .+|++++.|+.|++||+.+
T Consensus 276 d~~~~-------------~~~~~~---~~h~~~v~~v~~s~~g-------~~l~s~~~d~~i~vwd~p~ 321 (321)
T 3ow8_A 276 DVGTR-------------TCVHTF---FDHQDQVWGVKYNGNG-------SKIVSVGDDQEIHIYDCPI 321 (321)
T ss_dssp ETTTT-------------EEEEEE---CCCSSCEEEEEECTTS-------SEEEEEETTCCEEEEECC-
T ss_pred eCCCC-------------EEEEEE---cCCCCcEEEEEECCCC-------CEEEEEeCCCeEEEEeCCC
Confidence 99876 555554 4699999999999999 8999999999999999864
No 3
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=8.9e-41 Score=267.61 Aligned_cols=242 Identities=15% Similarity=0.252 Sum_probs=208.2
Q ss_pred ccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceE
Q 037555 16 GLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAE 84 (298)
Q Consensus 16 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~ 84 (298)
...++.+|.+.|.++.|+ |.+..++++ ++|+ ++..+.+|..+|.+++|+|++++|++|+ .|+.
T Consensus 5 ~~~~~~~h~~~V~~~~fs-p~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s-----~d~~ 78 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFH-PTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS-----DDFR 78 (304)
T ss_dssp CEEEEEEECSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEE-----TTSE
T ss_pred eEEeecCCCCceEEEEEC-CCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEEC-----CCCE
Confidence 456788999999999999 566666665 4664 4678889999999999999999999995 4999
Q ss_pred EEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc-C
Q 037555 85 IWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-F 163 (298)
Q Consensus 85 i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 163 (298)
|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||++.. ......+.+|...|.+++|+| +
T Consensus 79 i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~------~~~~~~~~~h~~~v~~v~~~p~~ 152 (304)
T 2ynn_A 79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN------WALEQTFEGHEHFVMCVAFNPKD 152 (304)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGT------TEEEEEECCCCSCEEEEEECTTC
T ss_pred EEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCC------cchhhhhcccCCcEEEEEECCCC
Confidence 999999999999999999999999999999999999999999999999863 245667788999999999999 6
Q ss_pred CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCC
Q 037555 164 GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPA 243 (298)
Q Consensus 164 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 243 (298)
+..|++|+.|+.|++||+++......+ ...+...+..+.|+|.. ++.+|++|+.|+.|++||++++
T Consensus 153 ~~~l~sgs~D~~v~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~---~~~~l~s~s~D~~i~iWd~~~~--------- 218 (304)
T 2ynn_A 153 PSTFASGCLDRTVKVWSLGQSTPNFTL--TTGQERGVNYVDYYPLP---DKPYMITASDDLTIKIWDYQTK--------- 218 (304)
T ss_dssp TTEEEEEETTSEEEEEETTCSSCSEEE--ECCCTTCEEEEEECCST---TCCEEEEEETTSEEEEEETTTT---------
T ss_pred CCEEEEEeCCCeEEEEECCCCCcccee--ccCCcCcEEEEEEEEcC---CCCEEEEEcCCCeEEEEeCCCC---------
Confidence 789999999999999999887665533 23466789999998742 1269999999999999999876
Q ss_pred CCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 244 PSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.++.. +.+|...|.+++|+|++ .+|++++.||+|++||++
T Consensus 219 ----~~~~~---~~~h~~~v~~~~~~p~~-------~~l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 219 ----SCVAT---LEGHMSNVSFAVFHPTL-------PIIISGSEDGTLKIWNSS 258 (304)
T ss_dssp ----EEEEE---EECCSSCEEEEEECSSS-------SEEEEEETTSCEEEEETT
T ss_pred ----cccee---eCCCCCCEEEEEECCCC-------CEEEEEcCCCeEEEEECC
Confidence 55555 44799999999999999 899999999999999974
No 4
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.3e-40 Score=269.36 Aligned_cols=250 Identities=16% Similarity=0.213 Sum_probs=215.6
Q ss_pred ccccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC---------ceEEeccCCCceEEEEEcCC
Q 037555 3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP---------ESHKLYGHGNELFSLCCDHQ 67 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~---------~~~~~~~h~~~v~~~~~s~~ 67 (298)
++.++.|+..+++.+..+..|...|..+.+. |.+..++++ .+|+ ....+.+|.+.|.++.|+++
T Consensus 76 Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 154 (340)
T 1got_B 76 DGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA-PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154 (340)
T ss_dssp TTEEEEEETTTCCEEEEEECSSSCEEEEEEC-TTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEET
T ss_pred CCcEEEEECCCCCcceEeecCCccEEEEEEC-CCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCC
Confidence 5677888888999999999999999999999 456666654 3442 34567899999999999988
Q ss_pred CCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEE
Q 037555 68 GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR 147 (298)
Q Consensus 68 ~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 147 (298)
+. +++++ .|+.|++||+.+++.+..+.+|...|.+++|+|+++++++++.|+.|++||++. ......
T Consensus 155 ~~-l~s~s-----~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~-------~~~~~~ 221 (340)
T 1got_B 155 NQ-IVTSS-----GDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE-------GMCRQT 221 (340)
T ss_dssp TE-EEEEE-----TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-------CSEEEE
T ss_pred Cc-EEEEE-----CCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC-------CeeEEE
Confidence 76 67774 489999999999999999999999999999999999999999999999999987 556778
Q ss_pred eeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEE
Q 037555 148 QEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIE 227 (298)
Q Consensus 148 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~ 227 (298)
+..|...|.+++|+|++++|++++.||.|++||++..+.+..+ ....+...|.+++|+|++ .+|++|+.|+.|+
T Consensus 222 ~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~~~~v~~~~~s~~g-----~~l~~g~~d~~i~ 295 (340)
T 1got_B 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-SHDNIICGITSVSFSKSG-----RLLLAGYDDFNCN 295 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCTTCCSCEEEEEECTTS-----SEEEEEETTSEEE
T ss_pred EcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE-ccCCcccceEEEEECCCC-----CEEEEECCCCeEE
Confidence 8899999999999999999999999999999999987766533 222344579999999998 7999999999999
Q ss_pred EEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555 228 LWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ 295 (298)
Q Consensus 228 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~ 295 (298)
+||+.+. ..... +.+|...|.+++|+|++ .+|++++.|+.|++||
T Consensus 296 vwd~~~~-------------~~~~~---~~~h~~~v~~~~~s~dg-------~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 296 VWDALKA-------------DRAGV---LAGHDNRVSCLGVTDDG-------MAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEETTTC-------------CEEEE---EECCSSCEEEEEECTTS-------SCEEEEETTSCEEEEC
T ss_pred EEEcccC-------------cEeeE---eecCCCcEEEEEEcCCC-------CEEEEEcCCccEEecC
Confidence 9998765 44444 44799999999999999 8999999999999997
No 5
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.2e-40 Score=270.70 Aligned_cols=233 Identities=19% Similarity=0.249 Sum_probs=190.7
Q ss_pred cCCCCCceeeeccCCCccccccc------CCCCc---------eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEE
Q 037555 21 ESVPDAVPAVFTEPPIEDQLAWH------TLWPE---------SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEI 85 (298)
Q Consensus 21 ~~~~~~v~~~~~~~~~~~~~~~~------~~~~~---------~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i 85 (298)
..+...|.++.|.|. . .++++ ++|+. ...+.+|.+.|++++|+|+|++|++|+. |+.|
T Consensus 79 ~~~~~~v~~~~~s~d-~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~-----d~~i 151 (344)
T 4gqb_B 79 VQTEAGVADLTWVGE-R-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSK-----DICI 151 (344)
T ss_dssp EEESSCEEEEEEETT-T-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEET-----TSCE
T ss_pred eccCCCEEEEEEeCC-C-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeC-----CCeE
Confidence 345667899999854 3 33333 56742 2335589999999999999999999954 8999
Q ss_pred EEEEcCCceeeeccccccccEEEEEEcCCCC-EEEEEeCCCeEEEEEeccCCCCccceeeeEEe--eccCCceEEEEEcc
Q 037555 86 WLWEVGSWKAMGRLQSHSLTVTQIRFSHDDN-LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQ--EAHKRIIWSCSWNP 162 (298)
Q Consensus 86 ~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~ 162 (298)
++||+.+++.+..+.+|...|.+++|+|++. +|++++.|+.|++||++... ....+ ..+...+.+++|+|
T Consensus 152 ~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-------~~~~~~~~~~~~~~~~~~~~p 224 (344)
T 4gqb_B 152 KVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK-------PASQIGCSAPGYLPTSLAWHP 224 (344)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS-------CEEECC----CCCEEEEEECS
T ss_pred EEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccc-------eeeeeecceeeccceeeeecC
Confidence 9999999999999999999999999999874 78999999999999998743 33333 34556789999999
Q ss_pred C-CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccC
Q 037555 163 F-GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVST 241 (298)
Q Consensus 163 ~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 241 (298)
+ +++|++|+.||.|++||+++++.+. .+.+|...|++++|+|++. .+|++|+.|+.|+|||++++
T Consensus 225 ~~~~~l~sg~~dg~v~~wd~~~~~~~~---~~~~h~~~v~~v~fsp~g~----~~lasgs~D~~i~vwd~~~~------- 290 (344)
T 4gqb_B 225 QQSEVFVFGDENGTVSLVDTKSTSCVL---SSAVHSQCVTGLVFSPHSV----PFLASLSEDCSLAVLDSSLS------- 290 (344)
T ss_dssp SCTTEEEEEETTSEEEEEESCC--CCE---EEECCSSCEEEEEECSSSS----CCEEEEETTSCEEEECTTCC-------
T ss_pred CCCcceEEeccCCcEEEEECCCCcEEE---EEcCCCCCEEEEEEccCCC----eEEEEEeCCCeEEEEECCCC-------
Confidence 5 5788999999999999999988877 6668999999999999874 68999999999999998765
Q ss_pred CCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 242 PAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+.. . +.+|...|++++|+|++. .+|+++|.|++|++|++.
T Consensus 291 ------~~~-~---~~~H~~~V~~v~~sp~~~------~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 291 ------ELF-R---SQAHRDFVRDATWSPLNH------SLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp ------EEE-E---ECCCSSCEEEEEECSSST------TEEEEEETTSCEEEEECC
T ss_pred ------cEE-E---EcCCCCCEEEEEEeCCCC------eEEEEEcCCCeEEEEECC
Confidence 332 2 457999999999999983 578899999999999975
No 6
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.9e-40 Score=276.39 Aligned_cols=243 Identities=23% Similarity=0.398 Sum_probs=213.1
Q ss_pred ccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceE
Q 037555 16 GLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAE 84 (298)
Q Consensus 16 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~ 84 (298)
....+.+|.+.|.++.|.| .+..++++ ++|+ ....+.+|.+.|++++|+|++++|++|+. |+.
T Consensus 100 ~~~~l~gh~~~V~~~~~~p-~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~-----D~~ 173 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA-----DMT 173 (410)
T ss_dssp CSCEEECCSSCEEEEEECS-SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEET-----TSC
T ss_pred ceEeecccCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeC-----CCe
Confidence 4567889999999999994 55566665 4664 46889999999999999999999999964 999
Q ss_pred EEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCC
Q 037555 85 IWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG 164 (298)
Q Consensus 85 i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 164 (298)
|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++ ...+..+.+|...|.++.|+|++
T Consensus 174 i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~-------~~~~~~~~~h~~~v~~~~~~~~g 246 (410)
T 1vyh_C 174 IKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT-------GYCVKTFTGHREWVRMVRPNQDG 246 (410)
T ss_dssp CCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-------CCEEEEEECCSSCEEEEEECTTS
T ss_pred EEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-------CcEEEEEeCCCccEEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999987 56677888999999999999999
Q ss_pred CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecccc---------------CCccEEEEeecCCcEEEE
Q 037555 165 HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQ---------------KNHGFLAVGMESGVIELW 229 (298)
Q Consensus 165 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---------------~~~~~l~~g~~dg~i~vw 229 (298)
.+|++++.|+.|++||+++.+... .+..|...|.+++|+|++.. ..+.+|++|+.|+.|++|
T Consensus 247 ~~l~s~s~D~~v~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iw 323 (410)
T 1vyh_C 247 TLIASCSNDQTVRVWVVATKECKA---ELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMW 323 (410)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCceee---EecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEE
Confidence 999999999999999999887766 66779999999999996320 013689999999999999
Q ss_pred EeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 230 SISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
|++++ .++.. +.+|...|.+++|+|++ .+|++++.|+.|++||++
T Consensus 324 d~~~~-------------~~~~~---~~~h~~~v~~v~~~~~g-------~~l~s~s~D~~i~vwd~~ 368 (410)
T 1vyh_C 324 DVSTG-------------MCLMT---LVGHDNWVRGVLFHSGG-------KFILSCADDKTLRVWDYK 368 (410)
T ss_dssp ETTTT-------------EEEEE---EECCSSCEEEEEECSSS-------SCEEEEETTTEEEEECCT
T ss_pred ECCCC-------------ceEEE---EECCCCcEEEEEEcCCC-------CEEEEEeCCCeEEEEECC
Confidence 99876 55554 34699999999999999 899999999999999974
No 7
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.7e-40 Score=267.84 Aligned_cols=241 Identities=18% Similarity=0.290 Sum_probs=209.6
Q ss_pred CcccccccCCCCCceeeeccCC---Cccccccc------CCCC-------ceEEeccCCCceEEEEEcCCCCEEEeEecc
Q 037555 14 NDGLDTLESVPDAVPAVFTEPP---IEDQLAWH------TLWP-------ESHKLYGHGNELFSLCCDHQGKLVASSCKA 77 (298)
Q Consensus 14 ~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~------~~~~-------~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~ 77 (298)
|.....+.+|.+.|.++.+.|. .+..++++ ++|+ ....+.+|...|.+++|++++.++++++.
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~- 100 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL- 100 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEET-
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeC-
Confidence 4455667899999999999863 34566665 5774 23467899999999999999999999954
Q ss_pred CCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEE
Q 037555 78 QSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWS 157 (298)
Q Consensus 78 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~ 157 (298)
|+.|++||+.+++.+..+..|...+.+++|+|++++|++++.||.|++|+++. ......+..|...|.+
T Consensus 101 ----D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~-------~~~~~~~~~~~~~v~~ 169 (321)
T 3ow8_A 101 ----DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVES-------GKKEYSLDTRGKFILS 169 (321)
T ss_dssp ----TSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTT-------CSEEEEEECSSSCEEE
T ss_pred ----CCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCC-------CceeEEecCCCceEEE
Confidence 99999999999999999998999999999999999999999999999999987 4456677788899999
Q ss_pred EEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccc
Q 037555 158 CSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTN 237 (298)
Q Consensus 158 ~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~ 237 (298)
++|+|++++|++++.||.|++||+++++.+. .+.+|..+|.+++|+|++ .+|++|+.|+.|++||++..
T Consensus 170 ~~~spdg~~lasg~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~spd~-----~~l~s~s~dg~i~iwd~~~~--- 238 (321)
T 3ow8_A 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLH---TLEGHAMPIRSLTFSPDS-----QLLVTASDDGYIKIYDVQHA--- 238 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCCCEEEECTTS-----CEEEEECTTSCEEEEETTTC---
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEE---EEcccCCceeEEEEcCCC-----CEEEEEcCCCeEEEEECCCc---
Confidence 9999999999999999999999999987766 677899999999999998 79999999999999999865
Q ss_pred cccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 238 DVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
..... +.+|...|.+++|+|++ .+|++++.|++|++||++
T Consensus 239 ----------~~~~~---~~~h~~~v~~~~~sp~~-------~~l~s~s~D~~v~iwd~~ 278 (321)
T 3ow8_A 239 ----------NLAGT---LSGHASWVLNVAFCPDD-------THFVSSSSDKSVKVWDVG 278 (321)
T ss_dssp ----------CEEEE---ECCCSSCEEEEEECTTS-------SEEEEEETTSCEEEEETT
T ss_pred ----------ceeEE---EcCCCCceEEEEECCCC-------CEEEEEeCCCcEEEEeCC
Confidence 44444 45799999999999999 899999999999999974
No 8
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.8e-40 Score=271.45 Aligned_cols=254 Identities=17% Similarity=0.237 Sum_probs=206.9
Q ss_pred cccccceeeeecCccccc----ccCCCCCceeeeccCCCccccccc-----CCCCc---------eEEeccCCCceEEEE
Q 037555 2 YAATRETVERHGNDGLDT----LESVPDAVPAVFTEPPIEDQLAWH-----TLWPE---------SHKLYGHGNELFSLC 63 (298)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~---------~~~~~~h~~~v~~~~ 63 (298)
|++.++.++..++..... ..+|...|.++.|.|+ +..++.. ++|+. .....+|.+.|++++
T Consensus 68 wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d-~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~ 146 (357)
T 4g56_B 68 WGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSE-KGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLS 146 (357)
T ss_dssp CCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETT-TEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEE
T ss_pred ccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCC-CCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEE
Confidence 777788888777765443 3578899999999965 4444333 46742 234458999999999
Q ss_pred EcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCC-EEEEEeCCCeEEEEEeccCCCCccce
Q 037555 64 CDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDN-LLLSVSRDRQFSVFAIQRTGTGEIDY 142 (298)
Q Consensus 64 ~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~ 142 (298)
|+|++++|++++. |+.|++||+.+++.+..+.+|...|.+++|+|++. ++++++.||.|++||++....
T Consensus 147 ~spdg~~l~sgs~-----dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~----- 216 (357)
T 4g56_B 147 VFSDGTQAVSGGK-----DFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP----- 216 (357)
T ss_dssp ECSSSSEEEEEET-----TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC-----
T ss_pred ECCCCCEEEEEeC-----CCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce-----
Confidence 9999999999954 89999999999999999999999999999999875 789999999999999987432
Q ss_pred eeeEEeeccCCceEEEEEccC-CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee
Q 037555 143 QLIARQEAHKRIIWSCSWNPF-GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM 221 (298)
Q Consensus 143 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~ 221 (298)
........+...+.+++|+|+ +.+|++|+.|+.|++||+++++... .+..|...|++++|+|++. .+|++|+
T Consensus 217 ~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~---~~~~~~~~v~~l~~sp~~~----~~lasgs 289 (357)
T 4g56_B 217 ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQ---TSAVHSQNITGLAYSYHSS----PFLASIS 289 (357)
T ss_dssp BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCE---EECCCSSCEEEEEECSSSS----CCEEEEE
T ss_pred eeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeE---EEeccceeEEEEEEcCCCC----CEEEEEe
Confidence 112233456778999999997 5689999999999999999988777 6778899999999999874 6899999
Q ss_pred cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeec-CCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 222 ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKT-HEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 222 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.|+.|+|||++++ +.+.. .+|...|++|+|+| ++ .+|+|++.|++|++|++.
T Consensus 290 ~D~~i~iwd~~~~-------------~~~~~----~~H~~~V~~vafsP~d~-------~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 290 EDCTVAVLDADFS-------------EVFRD----LSHRDFVTGVAWSPLDH-------SKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp TTSCEEEECTTSC-------------EEEEE----CCCSSCEEEEEECSSST-------TEEEEEETTSCEEEEECC
T ss_pred CCCEEEEEECCCC-------------cEeEE----CCCCCCEEEEEEeCCCC-------CEEEEEcCCCeEEEEECC
Confidence 9999999999876 44433 26999999999998 66 799999999999999974
No 9
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.1e-39 Score=263.03 Aligned_cols=254 Identities=20% Similarity=0.279 Sum_probs=208.4
Q ss_pred ccccccCCCCCceeeeccCCCccccccc------CCCC----------ceEEeccCCCceEEEEEcCCCCEEEeEeccCC
Q 037555 16 GLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP----------ESHKLYGHGNELFSLCCDHQGKLVASSCKAQS 79 (298)
Q Consensus 16 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~----------~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~ 79 (298)
...++.+|.+.|..+.+.|.....++++ ++|+ ++..+.+|...|.+++|+|++++|++++.
T Consensus 9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~--- 85 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW--- 85 (319)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET---
T ss_pred EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC---
Confidence 4567899999999999996666667665 4674 25678899999999999999999999964
Q ss_pred CCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEE
Q 037555 80 TAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS 159 (298)
Q Consensus 80 ~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 159 (298)
|+.|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|+.|++||++. ..+..+.+|...|.++.
T Consensus 86 --D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~--------~~~~~~~~h~~~v~~~~ 155 (319)
T 3frx_A 86 --DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--------QCLATLLGHNDWVSQVR 155 (319)
T ss_dssp --TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS--------CEEEEECCCSSCEEEEE
T ss_pred --CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--------CeEEEEeccCCcEEEEE
Confidence 99999999999999999999999999999999999999999999999999863 45677788999999999
Q ss_pred EccC------CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555 160 WNPF------GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 160 ~~~~------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 233 (298)
|.|. +..|++++.|+.|++||+++.+... .+.+|...|.+++|+|++ .+|++|+.||.|++||+.+
T Consensus 156 ~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~---~~~~h~~~v~~~~~sp~g-----~~l~s~~~dg~i~iwd~~~ 227 (319)
T 3frx_A 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEA---DFIGHNSNINTLTASPDG-----TLIASAGKDGEIMLWNLAA 227 (319)
T ss_dssp ECCC------CCEEEEEETTSCEEEEETTTTEEEE---EECCCCSCEEEEEECTTS-----SEEEEEETTCEEEEEETTT
T ss_pred EccCCCCCCCccEEEEEeCCCEEEEEECCcchhhe---eecCCCCcEEEEEEcCCC-----CEEEEEeCCCeEEEEECCC
Confidence 9985 4489999999999999999877665 667899999999999998 7999999999999999976
Q ss_pred cccccccCCCC---------CC------------------cceeeeecc-----CCcccceEEEEEeecCCCCCCCcceE
Q 037555 234 NRTNDVSTPAP---------ST------------------ANIIIRFDP-----FACHVAAVNRMAWKTHEKPKNSRTMQ 281 (298)
Q Consensus 234 ~~~~~~~~~~~---------~~------------------~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~ 281 (298)
.+......... .. ......+.. ...|...+.+++|+|++ .+
T Consensus 228 ~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg-------~~ 300 (319)
T 3frx_A 228 KKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG-------QT 300 (319)
T ss_dssp TEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTS-------SE
T ss_pred CcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCC-------CE
Confidence 54322111100 00 000111110 12355678999999999 89
Q ss_pred EEeeeCCCcEEEeEec
Q 037555 282 LASCGADNTVRVFQVN 297 (298)
Q Consensus 282 l~s~~~d~~i~iw~~~ 297 (298)
|++++.|+.|++||+.
T Consensus 301 l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 301 LFAGYTDNVIRVWQVM 316 (319)
T ss_dssp EEEEETTSCEEEEEEE
T ss_pred EEEeecCceEEEEEEe
Confidence 9999999999999984
No 10
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.9e-39 Score=265.19 Aligned_cols=251 Identities=16% Similarity=0.213 Sum_probs=216.0
Q ss_pred ccccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCC-----------CceEEeccCCCceEEEEEc
Q 037555 3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLW-----------PESHKLYGHGNELFSLCCD 65 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~-----------~~~~~~~~h~~~v~~~~~s 65 (298)
++.++.|+..+++....+..|...|..+.|. |.+..++++ .+| .....+.+|...|.+++|+
T Consensus 85 Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~s-p~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 163 (354)
T 2pbi_B 85 DGKVIVWDSFTTNKEHAVTMPCTWVMACAYA-PSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFT 163 (354)
T ss_dssp TSEEEEEETTTCCEEEEEECSSSCCCEEEEC-TTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEEC
T ss_pred CCeEEEEECCCCCcceEEecCCCCEEEEEEC-CCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEe
Confidence 5667888888899999999999999999999 556666554 233 2356777899999999999
Q ss_pred CCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcC--CCCEEEEEeCCCeEEEEEeccCCCCcccee
Q 037555 66 HQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH--DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQ 143 (298)
Q Consensus 66 ~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 143 (298)
|++..|++++. |++|++||+++++.+..+.+|...|.+++|+| ++++|++++.||.|++||+++ ..
T Consensus 164 ~~~~~l~t~s~-----D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~-------~~ 231 (354)
T 2pbi_B 164 NSDMQILTASG-----DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-------GQ 231 (354)
T ss_dssp SSSSEEEEEET-----TSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT-------CC
T ss_pred CCCCEEEEEeC-----CCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC-------Cc
Confidence 99999999954 99999999999999999999999999999988 568999999999999999987 55
Q ss_pred eeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecC
Q 037555 144 LIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMES 223 (298)
Q Consensus 144 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~d 223 (298)
.+..+..|...|.+++|+|++++|++++.|++|++||++..+....+ ....+...+.+++|+|++ .+|++|+.|
T Consensus 232 ~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~-~~~~~~~~~~~~~~s~~g-----~~l~~g~~d 305 (354)
T 2pbi_B 232 CVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIY-SKESIIFGASSVDFSLSG-----RLLFAGYND 305 (354)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE-CCTTCCSCEEEEEECTTS-----SEEEEEETT
T ss_pred EEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEE-cCCCcccceeEEEEeCCC-----CEEEEEECC
Confidence 67788899999999999999999999999999999999987665422 222334578999999998 799999999
Q ss_pred CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555 224 GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ 295 (298)
Q Consensus 224 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~ 295 (298)
+.|++||+.++ ..+.. +.+|...|++++|+|++ .+|++++.|++|++|+
T Consensus 306 ~~i~vwd~~~~-------------~~~~~---l~~h~~~v~~l~~spdg-------~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 306 YTINVWDVLKG-------------SRVSI---LFGHENRVSTLRVSPDG-------TAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SCEEEEETTTC-------------SEEEE---ECCCSSCEEEEEECTTS-------SCEEEEETTSEEEEEC
T ss_pred CcEEEEECCCC-------------ceEEE---EECCCCcEEEEEECCCC-------CEEEEEcCCCCEEecC
Confidence 99999999766 44444 45799999999999999 8999999999999996
No 11
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.8e-39 Score=259.58 Aligned_cols=258 Identities=22% Similarity=0.388 Sum_probs=197.4
Q ss_pred ccccceeeeecCc--ccccc-cC-CCCCceeeeccCCCccccccc------CCCC------------ceEEeccCCCceE
Q 037555 3 AATRETVERHGND--GLDTL-ES-VPDAVPAVFTEPPIEDQLAWH------TLWP------------ESHKLYGHGNELF 60 (298)
Q Consensus 3 ~~~~~~~~~~~~~--~~~~~-~~-~~~~v~~~~~~~~~~~~~~~~------~~~~------------~~~~~~~h~~~v~ 60 (298)
++.++.++..++. .+..+ .+ |...|.++.|.| .+..++++ ++|+ ....+.+|...|+
T Consensus 33 D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~ 111 (330)
T 2hes_X 33 DRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVK 111 (330)
T ss_dssp SSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECT-TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEE
T ss_pred CCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECC-CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEE
Confidence 4556677766653 34445 34 999999999994 56666655 4663 2456789999999
Q ss_pred EEEEcCCCCEEEeEeccCCCCceEEEEEEcCC----ceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCC
Q 037555 61 SLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS----WKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136 (298)
Q Consensus 61 ~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 136 (298)
+++|+|++++|++++. |+.|++||+.. .+.+..+.+|...|.+++|+|++++|++++.|+.|++||.....
T Consensus 112 ~v~~sp~g~~las~s~-----D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~ 186 (330)
T 2hes_X 112 GVAWSNDGYYLATCSR-----DKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD 186 (330)
T ss_dssp EEEECTTSCEEEEEET-----TSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE
T ss_pred EEEECCCCCEEEEEeC-----CCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC
Confidence 9999999999999964 99999999943 24567788999999999999999999999999999999987532
Q ss_pred CCccceeeeEEeeccCCceEEEEEccC--CCEEEEeeCCCeEEEEEccCCcc-----eeeeeecCC-CCCceEEEEEeec
Q 037555 137 TGEIDYQLIARQEAHKRIIWSCSWNPF--GHEFATGSRDKTVKIWAVENKSS-----VKQILALPP-FNSSVTALSWVGL 208 (298)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~-----~~~~~~~~~-~~~~v~~~~~~~~ 208 (298)
...+..+.+|...|.+++|+|+ +.+|++++.|++|++||++.... ......+.. |...|.+++|++.
T Consensus 187 -----~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~ 261 (330)
T 2hes_X 187 -----WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN 261 (330)
T ss_dssp -----EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTT
T ss_pred -----eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCC
Confidence 3567788899999999999998 67899999999999999976421 011224444 8889999999965
Q ss_pred cccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccc-eEEEEEeec--CCCCCCCcceEEEee
Q 037555 209 DRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVA-AVNRMAWKT--HEKPKNSRTMQLASC 285 (298)
Q Consensus 209 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~--~~~~~~~~~~~l~s~ 285 (298)
+ +|++++.||.|++|+...+.. ..... ...+|.. .|.+++|+| ++ .+|+++
T Consensus 262 ~------~l~s~~~dg~v~iw~~~~~~~-----------~~~~~--~~~~h~~~~v~~v~~~~~~~~-------~~las~ 315 (330)
T 2hes_X 262 G------LIASVGADGVLAVYEEVDGEW-----------KVFAK--RALCHGVYEINVVKWLELNGK-------TILATG 315 (330)
T ss_dssp S------CEEEEETTSCEEEEEEETTEE-----------EEEEE--ESCTTTTSCEEEEEEC------------CCEEEE
T ss_pred C------EEEEEeCCCEEEEEEcCCCce-----------EEEec--cccccccceEEEEEEecCCCc-------eEEEEe
Confidence 4 799999999999999875410 11111 1346776 899999999 56 799999
Q ss_pred eCCCcEEEeEec
Q 037555 286 GADNTVRVFQVN 297 (298)
Q Consensus 286 ~~d~~i~iw~~~ 297 (298)
+.||+|++|+++
T Consensus 316 s~Dg~v~~W~~~ 327 (330)
T 2hes_X 316 GDDGIVNFWSLE 327 (330)
T ss_dssp ETTSEEEEEEC-
T ss_pred cCCCcEEEEEec
Confidence 999999999975
No 12
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.1e-38 Score=254.72 Aligned_cols=250 Identities=19% Similarity=0.297 Sum_probs=201.1
Q ss_pred cccccCCCCCceeeeccCCCccccccc------CCCC-------ceEEeccCCCceEEEEEcCC--CCEEEeEeccCCCC
Q 037555 17 LDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-------ESHKLYGHGNELFSLCCDHQ--GKLVASSCKAQSTA 81 (298)
Q Consensus 17 ~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-------~~~~~~~h~~~v~~~~~s~~--~~~l~~~~~~~~~~ 81 (298)
+..+.+|.+.|..++|+ |.+..++++ ++|+ .+.++.+|.++|++++|+++ +++|++++.
T Consensus 2 ~~~~~~h~~~V~~~~~s-~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~----- 75 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMD-YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY----- 75 (297)
T ss_dssp CEECCSCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET-----
T ss_pred ceeccCCcCceEEEEEC-CCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcC-----
Confidence 34578999999999999 667777765 4563 35788999999999999864 899999954
Q ss_pred ceEEEEEEcCCce--eeeccccccccEEEEEEcCC--CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEE
Q 037555 82 AAEIWLWEVGSWK--AMGRLQSHSLTVTQIRFSHD--DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWS 157 (298)
Q Consensus 82 d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~ 157 (298)
|++|++||+.+++ .+..+.+|...|.+++|+|+ +.+|++++.|+.|++||++.... .....+..|...|.+
T Consensus 76 D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~-----~~~~~~~~h~~~v~~ 150 (297)
T 2pm7_B 76 DGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGT-----TSPIIIDAHAIGVNS 150 (297)
T ss_dssp TTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSC-----BCCEEEECCSSCEEE
T ss_pred CCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCc-----eeeeeeecccCccce
Confidence 9999999998774 45567789999999999997 88999999999999999986421 113456789999999
Q ss_pred EEEccC-------------CCEEEEeeCCCeEEEEEccCCccee-eeeecCCCCCceEEEEEeeccccCCccEEEEeecC
Q 037555 158 CSWNPF-------------GHEFATGSRDKTVKIWAVENKSSVK-QILALPPFNSSVTALSWVGLDRQKNHGFLAVGMES 223 (298)
Q Consensus 158 ~~~~~~-------------~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~d 223 (298)
++|+|+ +++|++|+.|+.|++||+++..... ....+.+|...|.+++|+|++. .+.+|++++.|
T Consensus 151 ~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~--~~~~las~s~D 228 (297)
T 2pm7_B 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL--LRSYMASVSQD 228 (297)
T ss_dssp EEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS--SSEEEEEEETT
T ss_pred EeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCC--CceEEEEEECC
Confidence 999996 4799999999999999998765322 2336778999999999999840 11699999999
Q ss_pred CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 224 GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 224 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+.|++||++..... ..........|...|.+++|+|++ .+|++++.|+.|++|+.+
T Consensus 229 ~~v~iWd~~~~~~~-----------~~~~~~~~~~~~~~v~~~~~s~~g-------~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 229 RTCIIWTQDNEQGP-----------WKKTLLKEEKFPDVLWRASWSLSG-------NVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp SCEEEEEESSTTSC-----------CEEEESSSSCCSSCEEEEEECSSS-------CCEEEEETTSCEEEEEEC
T ss_pred CcEEEEEeCCCCCc-----------cceeeeecccCCCcEEEEEECCCC-------CEEEEEcCCCcEEEEEEC
Confidence 99999999764211 111111124678899999999999 899999999999999975
No 13
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.2e-39 Score=261.12 Aligned_cols=236 Identities=17% Similarity=0.206 Sum_probs=191.4
Q ss_pred cCCCCCceeeeccCCCccccccc-----CCCCce----------------EEeccCCCceEEEEEcCCCCEEEeEeccCC
Q 037555 21 ESVPDAVPAVFTEPPIEDQLAWH-----TLWPES----------------HKLYGHGNELFSLCCDHQGKLVASSCKAQS 79 (298)
Q Consensus 21 ~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~~----------------~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~ 79 (298)
..|+..|.++.|+ |++..++.+ ++|+.. .....|...|.+++|+|++ .|++++
T Consensus 27 ~~~~~~v~~~~fs-~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s---- 100 (344)
T 4gqb_B 27 ACMERQLEAARYR-SDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVAS---- 100 (344)
T ss_dssp SSCCSEEEEEEEC-TTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEE----
T ss_pred ccccCCEEEEEEC-CCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEE----
Confidence 4567789999999 566666654 577521 1222356789999999986 566774
Q ss_pred CCceEEEEEEcCCceeeec----cccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCce
Q 037555 80 TAAAEIWLWEVGSWKAMGR----LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRII 155 (298)
Q Consensus 80 ~~d~~i~vw~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v 155 (298)
.||.|+|||+.+++.+.. +.+|...|++++|+|++++|++++.|++|++||+.+ ...+..+.+|...|
T Consensus 101 -~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~-------~~~~~~~~~h~~~V 172 (344)
T 4gqb_B 101 -DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ-------QVVLSSYRAHAAQV 172 (344)
T ss_dssp -TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-------TEEEEEECCCSSCE
T ss_pred -CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC-------CcEEEEEcCcCCce
Confidence 499999999998876543 347999999999999999999999999999999987 67788899999999
Q ss_pred EEEEEccCC-CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555 156 WSCSWNPFG-HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 156 ~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
.+++|+|++ .+|++++.|+.|++||+++++....+ ....+...+.+++|+|.+. .+|++|+.||.|++||++++
T Consensus 173 ~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~----~~l~sg~~dg~v~~wd~~~~ 247 (344)
T 4gqb_B 173 TCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI-GCSAPGYLPTSLAWHPQQS----EVFVFGDENGTVSLVDTKST 247 (344)
T ss_dssp EEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEEC-C----CCCEEEEEECSSCT----TEEEEEETTSEEEEEESCC-
T ss_pred EEEEecCCCCCceeeeccccccccccccccceeeee-ecceeeccceeeeecCCCC----cceEEeccCCcEEEEECCCC
Confidence 999999987 57899999999999999998877633 2234566799999999763 78999999999999999877
Q ss_pred ccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 235 RTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+++.. +.+|...|++++|+|++. .+|++++.|++|+|||++
T Consensus 248 -------------~~~~~---~~~h~~~v~~v~fsp~g~------~~lasgs~D~~i~vwd~~ 288 (344)
T 4gqb_B 248 -------------SCVLS---SAVHSQCVTGLVFSPHSV------PFLASLSEDCSLAVLDSS 288 (344)
T ss_dssp --------------CCEE---EECCSSCEEEEEECSSSS------CCEEEEETTSCEEEECTT
T ss_pred -------------cEEEE---EcCCCCCEEEEEEccCCC------eEEEEEeCCCeEEEEECC
Confidence 44444 447999999999999973 589999999999999975
No 14
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-38 Score=257.97 Aligned_cols=259 Identities=21% Similarity=0.303 Sum_probs=208.2
Q ss_pred CcccccccCCCC-CceeeeccCCCccccccc------CCCCc-------eE-EeccCCCceEEEEEcCCCCEEEeEeccC
Q 037555 14 NDGLDTLESVPD-AVPAVFTEPPIEDQLAWH------TLWPE-------SH-KLYGHGNELFSLCCDHQGKLVASSCKAQ 78 (298)
Q Consensus 14 ~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~------~~~~~-------~~-~~~~h~~~v~~~~~s~~~~~l~~~~~~~ 78 (298)
-+.+..+.+|++ .|..+.|+ |.+..++++ ++|+. .. ...+|...|.+++|+|++++|++++.
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~s-p~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~-- 81 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWN-PAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF-- 81 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEEC-TTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEET--
T ss_pred EEEeeeecCCCCCcEEEEEEC-CCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEEC--
Confidence 346778899998 89999999 567777765 56742 11 23689999999999999999999964
Q ss_pred CCCceEEEEEEcCCc--eeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceE
Q 037555 79 STAAAEIWLWEVGSW--KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIW 156 (298)
Q Consensus 79 ~~~d~~i~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 156 (298)
|+.|++|++..+ +.+..+.+|...|.+++|+|++++|++++.|+.|++||+..... ...+..+..|...|.
T Consensus 82 ---D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~----~~~~~~~~~h~~~v~ 154 (345)
T 3fm0_A 82 ---DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE----YECVSVLNSHTQDVK 154 (345)
T ss_dssp ---TSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC----EEEEEEECCCCSCEE
T ss_pred ---CCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC----eEEEEEecCcCCCeE
Confidence 899999998765 45677889999999999999999999999999999999986432 345677788999999
Q ss_pred EEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccc
Q 037555 157 SCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRT 236 (298)
Q Consensus 157 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~ 236 (298)
+++|+|++++|++++.|+.|++||++..... ....+.+|...|.+++|+|++ .+|++|+.|+.|++|+......
T Consensus 155 ~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~-~~~~~~~h~~~v~~l~~sp~g-----~~l~s~s~D~~v~iW~~~~~~~ 228 (345)
T 3fm0_A 155 HVVWHPSQELLASASYDDTVKLYREEEDDWV-CCATLEGHESTVWSLAFDPSG-----QRLASCSDDRTVRIWRQYLPGN 228 (345)
T ss_dssp EEEECSSSSCEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECTTS-----SEEEEEETTSCEEEEEEECTTC
T ss_pred EEEECCCCCEEEEEeCCCcEEEEEecCCCEE-EEEEecCCCCceEEEEECCCC-----CEEEEEeCCCeEEEeccccCCC
Confidence 9999999999999999999999999876532 223677899999999999998 7999999999999999865432
Q ss_pred ccccC--CCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 237 NDVST--PAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 237 ~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
..... .....+.++..+. ..|...|.+++|+|++ ..|++++.|+.|++|+++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~v~~~~~~-------~~l~s~~~d~~i~vw~~~ 282 (345)
T 3fm0_A 229 EQGVACSGSDPSWKCICTLS--GFHSRTIYDIAWCQLT-------GALATACGDDAIRVFQED 282 (345)
T ss_dssp TTCCCCC---CEEEEEEEEC--SSCSSCEEEEEECTTT-------CCEEEEETTSCEEEEEEC
T ss_pred CccceeeccCCccceeEEec--CCCCCcEEEEEEecCC-------CEEEEEeCCCeEEEEEeC
Confidence 21111 0111112233322 2388899999999999 899999999999999864
No 15
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-38 Score=255.95 Aligned_cols=254 Identities=19% Similarity=0.267 Sum_probs=195.4
Q ss_pred cCcccccccCCCCCceeeeccCCCccccccc------CCCC-------ceEEe-cc-CCCceEEEEEcCCCCEEEeEecc
Q 037555 13 GNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-------ESHKL-YG-HGNELFSLCCDHQGKLVASSCKA 77 (298)
Q Consensus 13 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-------~~~~~-~~-h~~~v~~~~~s~~~~~l~~~~~~ 77 (298)
+.+.+..+.+|.+.|.++.+.+. .++++ ++|+ ....+ .+ |...|.+++|+|++++|++++.
T Consensus 3 ~~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~- 78 (330)
T 2hes_X 3 SINLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF- 78 (330)
T ss_dssp CCEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET-
T ss_pred ccccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC-
Confidence 34567789999999999999853 55554 3553 23344 34 9999999999999999999964
Q ss_pred CCCCceEEEEEEcCC-------ceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeec
Q 037555 78 QSTAAAEIWLWEVGS-------WKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEA 150 (298)
Q Consensus 78 ~~~~d~~i~vw~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 150 (298)
|+.|++|++.. .+.+..+.+|...|.+++|+|++++|++++.|+.|++||++..... ...+..+..
T Consensus 79 ----D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~---~~~~~~~~~ 151 (330)
T 2hes_X 79 ----DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE---YECISVLQE 151 (330)
T ss_dssp ----TSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCC---CEEEEEECC
T ss_pred ----CCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCC---eEEEEEecc
Confidence 89999999853 3456678899999999999999999999999999999999532110 355677889
Q ss_pred cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEE
Q 037555 151 HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWS 230 (298)
Q Consensus 151 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd 230 (298)
|...|.+++|+|++++|++++.|+.|++||..+... ..+..+.+|...|.+++|+|++. +.+|++|+.|+.|++||
T Consensus 152 h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~---~~~l~s~s~D~~v~iw~ 227 (330)
T 2hes_X 152 HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW-ECVAVLNGHEGTVWSSDFDKTEG---VFRLCSGSDDSTVRVWK 227 (330)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCSSS---SCEEEEEETTSCEEEEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe-eEEEEccCCCCcEEEEEecCCCC---eeEEEEEeCCCeEEEEE
Confidence 999999999999999999999999999999876521 22236778999999999999831 15899999999999999
Q ss_pred eeecccccccCCCCCCcceeeeeccCC-cccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 231 ISVNRTNDVSTPAPSTANIIIRFDPFA-CHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
++....... ........+. .|...|.+++|++++ +|++++.||.|++|++.
T Consensus 228 ~~~~~~~~~--------~~~~~~~~~~~~h~~~v~~v~~s~~~--------~l~s~~~dg~v~iw~~~ 279 (330)
T 2hes_X 228 YMGDDEDDQ--------QEWVCEAILPDVHKRQVYNVAWGFNG--------LIASVGADGVLAVYEEV 279 (330)
T ss_dssp EEEECTTSC--------EEEEEEEECCSCCSSCEEEEEECTTS--------CEEEEETTSCEEEEEEE
T ss_pred ecCCCcccc--------ceeEEeeecccccccceEEEEEcCCC--------EEEEEeCCCEEEEEEcC
Confidence 986532110 1111111233 388999999999764 89999999999999963
No 16
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.8e-38 Score=257.55 Aligned_cols=213 Identities=23% Similarity=0.356 Sum_probs=184.4
Q ss_pred ceEEeccCCC-ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeee---ccccccccEEEEEEcCCCCEEEEEeC
Q 037555 48 ESHKLYGHGN-ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMG---RLQSHSLTVTQIRFSHDDNLLLSVSR 123 (298)
Q Consensus 48 ~~~~~~~h~~-~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~ 123 (298)
.+.++.+|.. .|.+++|+|+|++||+|+. |+.|+|||+.++.... ...+|...|.+++|+|++++|++++.
T Consensus 7 ~~~~~~~h~~~~v~~l~~sp~g~~las~~~-----D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~ 81 (345)
T 3fm0_A 7 LLGRVPAHPDSRCWFLAWNPAGTLLASCGG-----DRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81 (345)
T ss_dssp EEEEECCSTTSCEEEEEECTTSSCEEEEET-----TSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEET
T ss_pred EeeeecCCCCCcEEEEEECCCCCEEEEEcC-----CCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEEC
Confidence 4678889998 9999999999999999954 9999999998775432 23679999999999999999999999
Q ss_pred CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEE
Q 037555 124 DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTAL 203 (298)
Q Consensus 124 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~ 203 (298)
|+.+++|++.... ...+..+.+|...|.+++|+|++++|++++.|+.|++||++.......+..+..|...|.++
T Consensus 82 D~~v~iw~~~~~~-----~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~ 156 (345)
T 3fm0_A 82 DATTCIWKKNQDD-----FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHV 156 (345)
T ss_dssp TSCEEEEEECCC------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEE
T ss_pred CCcEEEEEccCCC-----eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEE
Confidence 9999999987632 35677888999999999999999999999999999999998876555555677899999999
Q ss_pred EEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEE
Q 037555 204 SWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLA 283 (298)
Q Consensus 204 ~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 283 (298)
+|+|++ .+|++|+.|+.|++||.+.... .+... +.+|...|++++|+|++ .+|+
T Consensus 157 ~~~p~~-----~~l~s~s~d~~i~~w~~~~~~~-----------~~~~~---~~~h~~~v~~l~~sp~g-------~~l~ 210 (345)
T 3fm0_A 157 VWHPSQ-----ELLASASYDDTVKLYREEEDDW-----------VCCAT---LEGHESTVWSLAFDPSG-------QRLA 210 (345)
T ss_dssp EECSSS-----SCEEEEETTSCEEEEEEETTEE-----------EEEEE---ECCCSSCEEEEEECTTS-------SEEE
T ss_pred EECCCC-----CEEEEEeCCCcEEEEEecCCCE-----------EEEEE---ecCCCCceEEEEECCCC-------CEEE
Confidence 999998 7999999999999999976411 12222 55799999999999999 8999
Q ss_pred eeeCCCcEEEeEe
Q 037555 284 SCGADNTVRVFQV 296 (298)
Q Consensus 284 s~~~d~~i~iw~~ 296 (298)
+++.|++|++|++
T Consensus 211 s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 211 SCSDDRTVRIWRQ 223 (345)
T ss_dssp EEETTSCEEEEEE
T ss_pred EEeCCCeEEEecc
Confidence 9999999999986
No 17
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.1e-38 Score=256.78 Aligned_cols=241 Identities=15% Similarity=0.217 Sum_probs=206.6
Q ss_pred CcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCc
Q 037555 14 NDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAA 82 (298)
Q Consensus 14 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d 82 (298)
.+....+.+|.+.|.++.|. |.+..++++ ++|+ .+..+..|...|.+++|+|++++|++++. |
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s-~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-----d 118 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWG-TDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL-----D 118 (340)
T ss_dssp CCEEEEECCCSSCEEEEEEC-TTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEET-----T
T ss_pred chhheeecCCCCceEEEEEC-CCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeC-----C
Confidence 34566789999999999998 566666665 4664 46778899999999999999999999954 8
Q ss_pred eEEEEEEcCCc----eeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEE
Q 037555 83 AEIWLWEVGSW----KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC 158 (298)
Q Consensus 83 ~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~ 158 (298)
+.|++|++.+. +....+.+|...|.++.|++++ .+++++.|+.|++||+.+ ...+..+.+|...|.++
T Consensus 119 ~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~-------~~~~~~~~~h~~~v~~~ 190 (340)
T 1got_B 119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIET-------GQQTTTFTGHTGDVMSL 190 (340)
T ss_dssp CEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTT-------TEEEEEECCCSSCEEEE
T ss_pred CeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCC-------CcEEEEEcCCCCceEEE
Confidence 99999999765 3445678899999999999876 489999999999999987 56678888999999999
Q ss_pred EEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccccc
Q 037555 159 SWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTND 238 (298)
Q Consensus 159 ~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~ 238 (298)
+|+|++++|++|+.|+.|++||++++.... .+.+|...|.+++|+|++ .+|++|+.|+.|++||++..
T Consensus 191 ~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~---~~~~h~~~v~~v~~~p~~-----~~l~s~s~d~~v~iwd~~~~---- 258 (340)
T 1got_B 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQ---TFTGHESDINAICFFPNG-----NAFATGSDDATCRLFDLRAD---- 258 (340)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTTCSEEE---EECCCSSCEEEEEECTTS-----SEEEEEETTSCEEEEETTTT----
T ss_pred EECCCCCEEEEEeCCCcEEEEECCCCeeEE---EEcCCcCCEEEEEEcCCC-----CEEEEEcCCCcEEEEECCCC----
Confidence 999999999999999999999999887766 677899999999999998 79999999999999999875
Q ss_pred ccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 239 VSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
..+..+. ...+...|.+++|+|++ .+|++++.|+.|++||+.
T Consensus 259 ---------~~~~~~~-~~~~~~~v~~~~~s~~g-------~~l~~g~~d~~i~vwd~~ 300 (340)
T 1got_B 259 ---------QELMTYS-HDNIICGITSVSFSKSG-------RLLLAGYDDFNCNVWDAL 300 (340)
T ss_dssp ---------EEEEEEC-CTTCCSCEEEEEECTTS-------SEEEEEETTSEEEEEETT
T ss_pred ---------cEEEEEc-cCCcccceEEEEECCCC-------CEEEEECCCCeEEEEEcc
Confidence 4443332 23345689999999999 899999999999999964
No 18
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.1e-38 Score=253.87 Aligned_cols=212 Identities=17% Similarity=0.233 Sum_probs=184.1
Q ss_pred ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeE
Q 037555 48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF 127 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 127 (298)
..+++.+|.+.|++++|+|++++|++++. |+.|++||+.+++.+..+..|..+|.+++|+|++++|++++.|+.|
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~-----dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i 79 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLY-----SGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI 79 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEET-----TSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred eEEeecCCCCceEEEEECCCCCEEEEEcC-----CCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEE
Confidence 56789999999999999999999999954 9999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555 128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG 207 (298)
Q Consensus 128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (298)
++||+.+ ...+..+..|...|.+++|+|++++|++|+.|++|++||+++..... ..+.+|...|.+++|+|
T Consensus 80 ~vwd~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~--~~~~~h~~~v~~v~~~p 150 (304)
T 2ynn_A 80 RVFNYNT-------GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALE--QTFEGHEHFVMCVAFNP 150 (304)
T ss_dssp EEEETTT-------CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEE--EEECCCCSCEEEEEECT
T ss_pred EEEECCC-------CcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchh--hhhcccCCcEEEEEECC
Confidence 9999987 56678889999999999999999999999999999999998764432 25678999999999999
Q ss_pred ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC
Q 037555 208 LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA 287 (298)
Q Consensus 208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~ 287 (298)
.+. .+|++|+.|+.|++||++.. .....+ ..+|...|..+.|+|.. ++.+|++++.
T Consensus 151 ~~~----~~l~sgs~D~~v~iwd~~~~-------------~~~~~~--~~~~~~~v~~~~~~~~~-----~~~~l~s~s~ 206 (304)
T 2ynn_A 151 KDP----STFASGCLDRTVKVWSLGQS-------------TPNFTL--TTGQERGVNYVDYYPLP-----DKPYMITASD 206 (304)
T ss_dssp TCT----TEEEEEETTSEEEEEETTCS-------------SCSEEE--ECCCTTCEEEEEECCST-----TCCEEEEEET
T ss_pred CCC----CEEEEEeCCCeEEEEECCCC-------------Ccccee--ccCCcCcEEEEEEEEcC-----CCCEEEEEcC
Confidence 542 79999999999999999765 222222 22466789999998742 1279999999
Q ss_pred CCcEEEeEec
Q 037555 288 DNTVRVFQVN 297 (298)
Q Consensus 288 d~~i~iw~~~ 297 (298)
|++|++||++
T Consensus 207 D~~i~iWd~~ 216 (304)
T 2ynn_A 207 DLTIKIWDYQ 216 (304)
T ss_dssp TSEEEEEETT
T ss_pred CCeEEEEeCC
Confidence 9999999975
No 19
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.1e-39 Score=267.59 Aligned_cols=259 Identities=15% Similarity=0.214 Sum_probs=215.9
Q ss_pred cccccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC------------ceEEeccCCCceEEEE
Q 037555 2 YAATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP------------ESHKLYGHGNELFSLC 63 (298)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~------------~~~~~~~h~~~v~~~~ 63 (298)
+++.++.|+..+++.+..+..|...|..+.|. |.+..++++ ++|+ ....+.+|.+.|.++.
T Consensus 86 ~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s-~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~ 164 (380)
T 3iz6_a 86 QDGRLIVWNALTSQKTHAIKLHCPWVMECAFA-PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQ 164 (380)
T ss_dssp TTSEEEEEETTTTEEEEEEECCCTTCCCCEEC-TTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCB
T ss_pred CCCeEEEEECCCCccceEEecCCCCEEEEEEC-CCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEE
Confidence 46678899999999999999999999999998 566666665 3442 3456789999999999
Q ss_pred EcCC-CCEEEeEeccCCCCceEEEEEEcCCceeeecc-----ccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccCC
Q 037555 64 CDHQ-GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRL-----QSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTG 136 (298)
Q Consensus 64 ~s~~-~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~-----~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~ 136 (298)
|+|+ +..|++|+ .|+.|++||+.+++.+..+ .+|...|.++.|++ ++++|++|+.|+.|++||++..
T Consensus 165 ~~~~~~~~l~s~s-----~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~- 238 (380)
T 3iz6_a 165 YVPDQETRLITGS-----GDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT- 238 (380)
T ss_dssp CCSSSSSCEEEEC-----TTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT-
T ss_pred EecCCCCEEEEEC-----CCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC-
Confidence 9996 45788884 5999999999999887665 57999999999987 8899999999999999999743
Q ss_pred CCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC----CCCCceEEEEEeeccccC
Q 037555 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP----PFNSSVTALSWVGLDRQK 212 (298)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~ 212 (298)
...+..+.+|...|.+++|+|++++|++++.||+|++||++++..+..+.... .+...|++++|+|++
T Consensus 239 -----~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g--- 310 (380)
T 3iz6_a 239 -----SRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISG--- 310 (380)
T ss_dssp -----CCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSS---
T ss_pred -----CcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCC---
Confidence 34567788999999999999999999999999999999999987765332211 122348999999999
Q ss_pred CccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeecc-CCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcE
Q 037555 213 NHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDP-FACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTV 291 (298)
Q Consensus 213 ~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i 291 (298)
.+|++|+.||.|++||+... .....+.. ..+|...|++++|+|++ .+|++|+.|++|
T Consensus 311 --~~l~~g~~dg~i~vwd~~~~-------------~~~~~~~~~~~~h~~~v~~l~~s~dg-------~~l~sgs~D~~i 368 (380)
T 3iz6_a 311 --RLLFAGYSNGDCYVWDTLLA-------------EMVLNLGTLQNSHEGRISCLGLSSDG-------SALCTGSWDKNL 368 (380)
T ss_dssp --SEEEEECTTSCEEEEETTTC-------------CEEEEECCSCSSCCCCCCEEEECSSS-------SEEEEECTTSCE
T ss_pred --CEEEEEECCCCEEEEECCCC-------------ceEEEEecccCCCCCceEEEEECCCC-------CEEEEeeCCCCE
Confidence 79999999999999998765 44444322 25799999999999999 899999999999
Q ss_pred EEeEec
Q 037555 292 RVFQVN 297 (298)
Q Consensus 292 ~iw~~~ 297 (298)
++|++.
T Consensus 369 ~iW~~~ 374 (380)
T 3iz6_a 369 KIWAFS 374 (380)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999975
No 20
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=4.8e-38 Score=274.54 Aligned_cols=270 Identities=14% Similarity=0.212 Sum_probs=215.7
Q ss_pred ccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCCc-------eEEeccCCCceEEEEEcCCCCEE
Q 037555 5 TRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWPE-------SHKLYGHGNELFSLCCDHQGKLV 71 (298)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~-------~~~~~~h~~~v~~~~~s~~~~~l 71 (298)
.++.++..+++.+..+.+|.+.|.++.|+ |.+..++++ ++|+. ...+.+|.++|.+++|+|++++|
T Consensus 40 ~v~l~~~~~~~~~~~~~~h~~~v~~~~~s-pdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l 118 (611)
T 1nr0_A 40 SVYTVPVGSLTDTEIYTEHSHQTTVAKTS-PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRI 118 (611)
T ss_dssp EEEEEETTCSSCCEEECCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEE
T ss_pred EEEEecCCCcccCeEecCCCCceEEEEEC-CCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEE
Confidence 44566667788899999999999999999 677778776 57752 35678999999999999999999
Q ss_pred EeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCC-EEEEEeCCCeEEEEEeccCCCCccceeeeEEeec
Q 037555 72 ASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDN-LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEA 150 (298)
Q Consensus 72 ~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 150 (298)
++++.+. ...+.|++||. ++....+.+|...|.+++|+|++. .|++++.|++|++||... .+....+.+
T Consensus 119 ~~~~~~~-~~~~~v~~wd~--~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~-------~~~~~~l~~ 188 (611)
T 1nr0_A 119 AAVGEGR-ERFGHVFLFDT--GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP-------FKFKSTFGE 188 (611)
T ss_dssp EEEECCS-SCSEEEEETTT--CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTT-------BEEEEEECC
T ss_pred EEEECCC-CceeEEEEeeC--CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCC-------CeEeeeecc
Confidence 9986521 11367888874 566778899999999999999986 699999999999999875 566778899
Q ss_pred cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeee----cCCCCCceEEEEEeeccccCCccEEEEeecCCcE
Q 037555 151 HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILA----LPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVI 226 (298)
Q Consensus 151 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i 226 (298)
|...|.+++|+|++++|++++.|+.|++||+.+++....+.. ..+|...|.+++|+|++ .+|++++.|+.|
T Consensus 189 H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg-----~~l~s~s~D~~v 263 (611)
T 1nr0_A 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG-----TKIASASADKTI 263 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS-----SEEEEEETTSEE
T ss_pred ccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCC-----CEEEEEeCCCeE
Confidence 999999999999999999999999999999998877652211 11689999999999998 799999999999
Q ss_pred EEEEeeecccccccCCCCCCc-------------------cee--------eeeccCCcccceEEEEEeecCCCCCCCcc
Q 037555 227 ELWSISVNRTNDVSTPAPSTA-------------------NII--------IRFDPFACHVAAVNRMAWKTHEKPKNSRT 279 (298)
Q Consensus 227 ~vwd~~~~~~~~~~~~~~~~~-------------------~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 279 (298)
++||+.+++............ ..+ .....+.+|...|++++|+|++
T Consensus 264 ~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg------- 336 (611)
T 1nr0_A 264 KIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG------- 336 (611)
T ss_dssp EEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-------
T ss_pred EEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC-------
Confidence 999998654322111000000 000 0112245799999999999999
Q ss_pred eEEEeeeCCCcEEEeEec
Q 037555 280 MQLASCGADNTVRVFQVN 297 (298)
Q Consensus 280 ~~l~s~~~d~~i~iw~~~ 297 (298)
.+|++++.|++|++||+.
T Consensus 337 ~~l~s~s~D~~v~~Wd~~ 354 (611)
T 1nr0_A 337 KTLFSADAEGHINSWDIS 354 (611)
T ss_dssp SEEEEEETTSCEEEEETT
T ss_pred CEEEEEeCCCcEEEEECC
Confidence 899999999999999974
No 21
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.2e-37 Score=253.62 Aligned_cols=257 Identities=19% Similarity=0.266 Sum_probs=201.1
Q ss_pred cccccccCCCCCceeeec-----cCCCccccccc------CCCCc------------eEEeccCCCceEEEEEcCCCCEE
Q 037555 15 DGLDTLESVPDAVPAVFT-----EPPIEDQLAWH------TLWPE------------SHKLYGHGNELFSLCCDHQGKLV 71 (298)
Q Consensus 15 ~~~~~~~~~~~~v~~~~~-----~~~~~~~~~~~------~~~~~------------~~~~~~h~~~v~~~~~s~~~~~l 71 (298)
+....+.+|.+.|.++.+ .++.+..++++ ++|+. ...+.+|...|.+++|+|++.+|
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l 91 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFA 91 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEE
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEE
Confidence 456788999999999988 65567777776 46642 45688999999999999999999
Q ss_pred EeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc
Q 037555 72 ASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH 151 (298)
Q Consensus 72 ~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 151 (298)
++++. |+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||+.... .........|
T Consensus 92 ~s~s~-----D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~-----~~~~~~~~~~ 161 (343)
T 2xzm_R 92 ISSSW-----DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC-----KFSSAEKENH 161 (343)
T ss_dssp EEEET-----TSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE-----EEECCTTTSC
T ss_pred EEEcC-----CCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc-----eeeeecccCC
Confidence 99954 9999999999999999999999999999999999999999999999999987311 1111112368
Q ss_pred CCceEEEEEccCC----------CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee
Q 037555 152 KRIIWSCSWNPFG----------HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM 221 (298)
Q Consensus 152 ~~~v~~~~~~~~~----------~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~ 221 (298)
...|.+++|+|++ .+|++++.|+.|++||.. ..... .+.+|...|.+++|+|++ .+|++|+
T Consensus 162 ~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~---~~~~h~~~v~~~~~s~~g-----~~l~sgs 232 (343)
T 2xzm_R 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRY---TFKAHESNVNHLSISPNG-----KYIATGG 232 (343)
T ss_dssp SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEE---EEECCSSCEEEEEECTTS-----SEEEEEE
T ss_pred CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeE---EEcCccccceEEEECCCC-----CEEEEEc
Confidence 8899999999986 789999999999999943 33333 556789999999999998 7999999
Q ss_pred cCCcEEEEEeeecccccccC-C---------CCC-------Ccceee-------------eec--------cCCcccceE
Q 037555 222 ESGVIELWSISVNRTNDVST-P---------APS-------TANIII-------------RFD--------PFACHVAAV 263 (298)
Q Consensus 222 ~dg~i~vwd~~~~~~~~~~~-~---------~~~-------~~~~~~-------------~~~--------~~~~~~~~v 263 (298)
.|+.|++||+.......... . .+. ....+. .+. ...+|...|
T Consensus 233 ~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 312 (343)
T 2xzm_R 233 KDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQC 312 (343)
T ss_dssp TTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCE
T ss_pred CCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCce
Confidence 99999999994332111000 0 000 000000 110 012577889
Q ss_pred EEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 264 NRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.+++|+|++ .+|++|+.||.|++|+++
T Consensus 313 ~~~~~sp~g-------~~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 313 TSLAWNALG-------KKLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp EEEEECSSS-------CCEEEEETTSEEEEEEEE
T ss_pred EEEEECCCC-------CeEEEecCCceEEEEEEE
Confidence 999999999 899999999999999975
No 22
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2e-37 Score=247.32 Aligned_cols=222 Identities=18% Similarity=0.297 Sum_probs=179.1
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC--ceeeeccccccccEEEEEEcC--CCCEEEEEeCC
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS--WKAMGRLQSHSLTVTQIRFSH--DDNLLLSVSRD 124 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~--~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d 124 (298)
+..+.+|.+.|++++|+|+|++||+|+. |+.|+||++.. .+.+..+.+|...|.+++|+| ++++|++++.|
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~-----D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D 76 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSS-----DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEET-----TSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeC-----CCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC
Confidence 3567899999999999999999999964 99999999974 466788899999999999986 38999999999
Q ss_pred CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC--CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEE
Q 037555 125 RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF--GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTA 202 (298)
Q Consensus 125 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~ 202 (298)
++|++||+.... ...+..+..|...|.+++|+|+ +.+|++++.|+.|++||++....... ..+.+|...|.+
T Consensus 77 ~~v~iWd~~~~~-----~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~-~~~~~h~~~v~~ 150 (297)
T 2pm7_B 77 GKVMIWKEENGR-----WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP-IIIDAHAIGVNS 150 (297)
T ss_dssp TEEEEEEBSSSC-----BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC-EEEECCSSCEEE
T ss_pred CEEEEEEcCCCc-----eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee-eeeecccCccce
Confidence 999999998642 2345566789999999999997 88999999999999999987643211 145578899999
Q ss_pred EEEeecccc--------CCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCC
Q 037555 203 LSWVGLDRQ--------KNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKP 274 (298)
Q Consensus 203 ~~~~~~~~~--------~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 274 (298)
++|+|+... ..+.+|++|+.|+.|++||+++.. ........+.+|...|.+++|+|++.
T Consensus 151 ~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~------------~~~~~~~~l~~H~~~V~~v~~sp~~~- 217 (297)
T 2pm7_B 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA------------QTYVLESTLEGHSDWVRDVAWSPTVL- 217 (297)
T ss_dssp EEECCCC------------CCEEEEEETTSCEEEEEEETTT------------TEEEEEEEECCCSSCEEEEEECCCCS-
T ss_pred EeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC------------ceEEEEEEecCCCCceEEEEECCCCC-
Confidence 999997310 012689999999999999998652 11112223567999999999999830
Q ss_pred CCCcceEEEeeeCCCcEEEeEec
Q 037555 275 KNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 275 ~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.+.+|++++.|++|++||++
T Consensus 218 ---~~~~las~s~D~~v~iWd~~ 237 (297)
T 2pm7_B 218 ---LRSYMASVSQDRTCIIWTQD 237 (297)
T ss_dssp ---SSEEEEEEETTSCEEEEEES
T ss_pred ---CceEEEEEECCCcEEEEEeC
Confidence 01799999999999999974
No 23
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.5e-38 Score=257.30 Aligned_cols=238 Identities=17% Similarity=0.196 Sum_probs=189.8
Q ss_pred cccCCCCCceeeeccCCCccccccc-----CCCCc----------------eEEeccCCCceEEEEEcCCCCEEEeEecc
Q 037555 19 TLESVPDAVPAVFTEPPIEDQLAWH-----TLWPE----------------SHKLYGHGNELFSLCCDHQGKLVASSCKA 77 (298)
Q Consensus 19 ~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~----------------~~~~~~h~~~v~~~~~s~~~~~l~~~~~~ 77 (298)
....|...|.++.|+ |++..++++ ++|+- .....+|...|++++|+|++.+|+++
T Consensus 37 ~p~~H~~~V~~v~fS-pDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s--- 112 (357)
T 4g56_B 37 APACMEVQIGAVRYR-RDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVAS--- 112 (357)
T ss_dssp ---CCCSEEEEEEEC-SSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEE---
T ss_pred CcccccCCEEEEEEC-CCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEE---
Confidence 345799999999999 677788776 34531 23345788999999999998766544
Q ss_pred CCCCceEEEEEEcCCceeeec----cccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCC
Q 037555 78 QSTAAAEIWLWEVGSWKAMGR----LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKR 153 (298)
Q Consensus 78 ~~~~d~~i~vw~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 153 (298)
.|+.|+|||+.+++.... ..+|...|.+++|+|++++|++++.|+.|++||+++ ...+..+..|..
T Consensus 113 ---~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~-------~~~~~~~~~h~~ 182 (357)
T 4g56_B 113 ---DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ-------KAVLKSYNAHSS 182 (357)
T ss_dssp ---TTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT-------TEEEEEECCCSS
T ss_pred ---CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC-------CcEEEEEcCCCC
Confidence 389999999988765433 347999999999999999999999999999999987 667888889999
Q ss_pred ceEEEEEccCC-CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEee
Q 037555 154 IIWSCSWNPFG-HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSIS 232 (298)
Q Consensus 154 ~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~ 232 (298)
.|++++|+|++ .++++++.||.|++||+++++....+ ....+...+.+++|+|++. .+|++|+.|+.|++||++
T Consensus 183 ~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~-~~~~~~~~v~~v~~sp~~~----~~la~g~~d~~i~~wd~~ 257 (357)
T 4g56_B 183 EVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI-DFCASDTIPTSVTWHPEKD----DTFACGDETGNVSLVNIK 257 (357)
T ss_dssp CEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC-CCTTCCSCEEEEEECTTST----TEEEEEESSSCEEEEESS
T ss_pred CEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee-eeccccccccchhhhhccc----ceEEEeecccceeEEECC
Confidence 99999999987 47899999999999999988776533 3345678899999999863 789999999999999998
Q ss_pred ecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 233 VNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+. +.... +.+|...|++++|+|++. .+|++++.|++|+|||++
T Consensus 258 ~~-------------~~~~~---~~~~~~~v~~l~~sp~~~------~~lasgs~D~~i~iwd~~ 300 (357)
T 4g56_B 258 NP-------------DSAQT---SAVHSQNITGLAYSYHSS------PFLASISEDCTVAVLDAD 300 (357)
T ss_dssp CG-------------GGCEE---ECCCSSCEEEEEECSSSS------CCEEEEETTSCEEEECTT
T ss_pred CC-------------cEeEE---EeccceeEEEEEEcCCCC------CEEEEEeCCCEEEEEECC
Confidence 77 44444 446899999999999873 689999999999999975
No 24
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=6e-37 Score=253.99 Aligned_cols=257 Identities=19% Similarity=0.267 Sum_probs=201.4
Q ss_pred ccceeeeecCcccccccCCCC------------------CceeeeccCCCccccccc------CCCC-----ceEEeccC
Q 037555 5 TRETVERHGNDGLDTLESVPD------------------AVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGH 55 (298)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h 55 (298)
..+.++..+|+.+..+..|.. .|.++.|. |.+..++++ ++|+ .+..+.+|
T Consensus 86 ~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s-~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h 164 (393)
T 1erj_A 86 TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS-PDGKFLATGAEDRLIRIWDIENRKIVMILQGH 164 (393)
T ss_dssp CEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred cEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEEC-CCCCEEEEEcCCCeEEEEECCCCcEEEEEccC
Confidence 345566667777666665542 37888998 566667665 4564 46778899
Q ss_pred CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEecc
Q 037555 56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQR 134 (298)
Q Consensus 56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 134 (298)
...|++++|+|++++|++++. |+.|++||+.+++....+. +...+.+++|+| ++++|++++.|+.|++||++.
T Consensus 165 ~~~v~~~~~~p~~~~l~s~s~-----d~~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~ 238 (393)
T 1erj_A 165 EQDIYSLDYFPSGDKLVSGSG-----DRTVRIWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 238 (393)
T ss_dssp SSCEEEEEECTTSSEEEEEET-----TSEEEEEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT
T ss_pred CCCEEEEEEcCCCCEEEEecC-----CCcEEEEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 999999999999999999954 9999999999998877766 667899999999 899999999999999999886
Q ss_pred CCCCccceeeeEEe-------eccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcce---------eeeeecCCCCC
Q 037555 135 TGTGEIDYQLIARQ-------EAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSV---------KQILALPPFNS 198 (298)
Q Consensus 135 ~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~---------~~~~~~~~~~~ 198 (298)
. ..+..+ .+|...|.+++|+|++++|++++.|+.|++||+++.... .....+.+|..
T Consensus 239 ~-------~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~ 311 (393)
T 1erj_A 239 G-------FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 311 (393)
T ss_dssp C-------CEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSS
T ss_pred C-------cEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccC
Confidence 3 233333 568899999999999999999999999999999864321 11224557889
Q ss_pred ceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCc
Q 037555 199 SVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSR 278 (298)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 278 (298)
.|.+++|+|++ .+|++|+.|+.|++||..++ ..+.. +.+|...|.+++|+++. ...++
T Consensus 312 ~v~~~~~~~~~-----~~l~sgs~D~~v~iwd~~~~-------------~~~~~---l~~h~~~v~~v~~~~~~-~~~p~ 369 (393)
T 1erj_A 312 FVLSVATTQND-----EYILSGSKDRGVLFWDKKSG-------------NPLLM---LQGHRNSVISVAVANGS-SLGPE 369 (393)
T ss_dssp CEEEEEECGGG-----CEEEEEETTSEEEEEETTTC-------------CEEEE---EECCSSCEEEEEECSSC-TTCTT
T ss_pred cEEEEEECCCC-----CEEEEEeCCCeEEEEECCCC-------------eEEEE---ECCCCCCEEEEEecCCc-CcCCC
Confidence 99999999998 79999999999999999876 44444 44799999999998732 01112
Q ss_pred ceEEEeeeCCCcEEEeEec
Q 037555 279 TMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 279 ~~~l~s~~~d~~i~iw~~~ 297 (298)
+.+|++++.||+|++|+++
T Consensus 370 ~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 370 YNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp CEEEEEEETTSEEEEEEEE
T ss_pred CCEEEEECCCCcEEECccc
Confidence 2899999999999999975
No 25
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=7.3e-37 Score=245.79 Aligned_cols=209 Identities=21% Similarity=0.406 Sum_probs=188.5
Q ss_pred CceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCe
Q 037555 47 PESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQ 126 (298)
Q Consensus 47 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 126 (298)
.....+.+|..+|++++|+|++++|++++ .|+.|++|++.+++....+.+|...|.+++|+|++++|++++.|+.
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~-----~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~ 88 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSS-----ADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKT 88 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEE-----TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEee-----CCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCE
Confidence 35678899999999999999999999995 4899999999999988889999999999999999999999999999
Q ss_pred EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEe
Q 037555 127 FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWV 206 (298)
Q Consensus 127 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~ 206 (298)
|++||++. ...+..+..|...|.+++|+|++++|++++.|+.|++||+++++... .+..|..+|.+++|+
T Consensus 89 i~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~ 158 (312)
T 4ery_A 89 LKIWDVSS-------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK---TLPAHSDPVSAVHFN 158 (312)
T ss_dssp EEEEETTT-------CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEC
T ss_pred EEEEECCC-------CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEE---EecCCCCcEEEEEEc
Confidence 99999987 56677888999999999999999999999999999999999887766 666788999999999
Q ss_pred eccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeee
Q 037555 207 GLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCG 286 (298)
Q Consensus 207 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~ 286 (298)
|++ .+|++++.|+.|++||+++. +.+..+ ...+...+..++|+|++ .+|++++
T Consensus 159 ~~~-----~~l~~~~~d~~i~~wd~~~~-------------~~~~~~--~~~~~~~~~~~~~~~~~-------~~l~~~~ 211 (312)
T 4ery_A 159 RDG-----SLIVSSSYDGLCRIWDTASG-------------QCLKTL--IDDDNPPVSFVKFSPNG-------KYILAAT 211 (312)
T ss_dssp TTS-----SEEEEEETTSCEEEEETTTC-------------CEEEEE--CCSSCCCEEEEEECTTS-------SEEEEEE
T ss_pred CCC-----CEEEEEeCCCcEEEEECCCC-------------ceeeEE--eccCCCceEEEEECCCC-------CEEEEEc
Confidence 988 79999999999999999876 444443 23467789999999999 8999999
Q ss_pred CCCcEEEeEec
Q 037555 287 ADNTVRVFQVN 297 (298)
Q Consensus 287 ~d~~i~iw~~~ 297 (298)
.|+.|++||++
T Consensus 212 ~d~~i~iwd~~ 222 (312)
T 4ery_A 212 LDNTLKLWDYS 222 (312)
T ss_dssp TTTEEEEEETT
T ss_pred CCCeEEEEECC
Confidence 99999999974
No 26
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6.1e-37 Score=250.38 Aligned_cols=242 Identities=14% Similarity=0.208 Sum_probs=205.7
Q ss_pred CcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCc
Q 037555 14 NDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAA 82 (298)
Q Consensus 14 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d 82 (298)
.+....+.+|.+.|.++.|. |.+..++++ ++|+ ....+..|...|.+++|+|++.+|++++ .|
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s-~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~-----~d 127 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWC-KDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGG-----LD 127 (354)
T ss_dssp CCEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEES-----TT
T ss_pred cEEEEEecCCCCeEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEee-----CC
Confidence 34567889999999999999 566677766 4664 4567778999999999999999999995 59
Q ss_pred eEEEEEEcCCc------eeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceE
Q 037555 83 AEIWLWEVGSW------KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIW 156 (298)
Q Consensus 83 ~~i~vw~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 156 (298)
+.+++|++... .....+.+|...|.+++|+|++..|++++.|++|++||++. ...+..+.+|...|.
T Consensus 128 ~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~-------~~~~~~~~~h~~~v~ 200 (354)
T 2pbi_B 128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVES-------GQLLQSFHGHGADVL 200 (354)
T ss_dssp SEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-------CCEEEEEECCSSCEE
T ss_pred CCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCC-------CeEEEEEcCCCCCeE
Confidence 99999998643 23445678999999999999999999999999999999987 567788889999999
Q ss_pred EEEEcc--CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555 157 SCSWNP--FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 157 ~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
+++|+| ++++|++|+.||.|++||+++++... .+..|...|.+++|+|++ .+|++|+.|+.|++||++..
T Consensus 201 ~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~---~~~~h~~~v~~v~~~p~~-----~~l~s~s~D~~v~lwd~~~~ 272 (354)
T 2pbi_B 201 CLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ---AFETHESDVNSVRYYPSG-----DAFASGSDDATCRLYDLRAD 272 (354)
T ss_dssp EEEECCCSSCCEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTS-----SEEEEEETTSCEEEEETTTT
T ss_pred EEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEE---EecCCCCCeEEEEEeCCC-----CEEEEEeCCCeEEEEECCCC
Confidence 999988 46899999999999999999988766 667899999999999998 79999999999999999865
Q ss_pred ccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 235 RTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.....+. ...+...+.+++|+|++ .+|++++.|+.|++||+.
T Consensus 273 -------------~~~~~~~-~~~~~~~~~~~~~s~~g-------~~l~~g~~d~~i~vwd~~ 314 (354)
T 2pbi_B 273 -------------REVAIYS-KESIIFGASSVDFSLSG-------RLLFAGYNDYTINVWDVL 314 (354)
T ss_dssp -------------EEEEEEC-CTTCCSCEEEEEECTTS-------SEEEEEETTSCEEEEETT
T ss_pred -------------cEEEEEc-CCCcccceeEEEEeCCC-------CEEEEEECCCcEEEEECC
Confidence 3333332 22345678999999999 899999999999999973
No 27
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.8e-38 Score=254.46 Aligned_cols=249 Identities=19% Similarity=0.278 Sum_probs=194.6
Q ss_pred cccCCCCCceeeeccCCCccccccc------CCCC-------ceEEeccCCCceEEEEEcC--CCCEEEeEeccCCCCce
Q 037555 19 TLESVPDAVPAVFTEPPIEDQLAWH------TLWP-------ESHKLYGHGNELFSLCCDH--QGKLVASSCKAQSTAAA 83 (298)
Q Consensus 19 ~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-------~~~~~~~h~~~v~~~~~s~--~~~~l~~~~~~~~~~d~ 83 (298)
.+.+|.+.|.++.|+ |.+..++++ ++|+ .+..+.+|.++|.+++|+| ++++|++++. |+
T Consensus 8 ~~~~H~~~V~~v~~s-~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~-----D~ 81 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMD-YYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSY-----DR 81 (316)
T ss_dssp ------CCEEEEEEC-GGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEET-----TS
T ss_pred ecccccCeEEEeeEc-CCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEEC-----CC
Confidence 457899999999999 667777776 5674 2467889999999999986 4899999954 99
Q ss_pred EEEEEEcCCce--eeeccccccccEEEEEEcCC--CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEE
Q 037555 84 EIWLWEVGSWK--AMGRLQSHSLTVTQIRFSHD--DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS 159 (298)
Q Consensus 84 ~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 159 (298)
+|++||+++++ ....+.+|...|.+++|+|+ +.+|++++.|+.|++||++.... ......+..|...|.+++
T Consensus 82 ~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~----~~~~~~~~~h~~~v~~~~ 157 (316)
T 3bg1_A 82 KVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQ----WEVKKINNAHTIGCNAVS 157 (316)
T ss_dssp CEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSC----EEECCBTTSSSSCBCCCE
T ss_pred EEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCC----cceeeeeccccCCcceEE
Confidence 99999998763 55667889999999999997 78999999999999999986321 223445567889999999
Q ss_pred EccC-----------------CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeec
Q 037555 160 WNPF-----------------GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGME 222 (298)
Q Consensus 160 ~~~~-----------------~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~ 222 (298)
|+|+ +.+|++|+.|+.|++||++.......+..+.+|...|.+++|+|++. .++.+|++++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~-~~~~~las~s~ 236 (316)
T 3bg1_A 158 WAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG-LPTSTIASCSQ 236 (316)
T ss_dssp ECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS-CSCCEEEEEET
T ss_pred EccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC-CCCceEEEEcC
Confidence 9997 46899999999999999976543333446778999999999999751 11258999999
Q ss_pred CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 223 SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 223 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
|+.|++|++....... ..... +..|...|.+++|+|++ .+|++++.|++|++|+..
T Consensus 237 D~~v~iw~~~~~~~~~---------~~~~~---~~~~~~~v~~v~~sp~g-------~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 237 DGRVFIWTCDDASSNT---------WSPKL---LHKFNDVVWHVSWSITA-------NILAVSGGDNKVTLWKES 292 (316)
T ss_dssp TCEEEEEECSSTTCCC---------CBCCE---EEECSSCEEEEEECTTT-------CCEEEEESSSCEEEEEEC
T ss_pred CCeEEEEEccCccccc---------hhhhh---hhcCCCcEEEEEEcCCC-------CEEEEEcCCCeEEEEEEC
Confidence 9999999987631100 01111 23478899999999999 899999999999999975
No 28
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6.5e-37 Score=246.78 Aligned_cols=211 Identities=19% Similarity=0.313 Sum_probs=181.0
Q ss_pred ceEEeccCCCceEEEEEcCCC-CEEEeEeccCCCCceEEEEEEcCC-----ceeeeccccccccEEEEEEcCCCCEEEEE
Q 037555 48 ESHKLYGHGNELFSLCCDHQG-KLVASSCKAQSTAAAEIWLWEVGS-----WKAMGRLQSHSLTVTQIRFSHDDNLLLSV 121 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~-~~l~~~~~~~~~~d~~i~vw~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 121 (298)
...++.+|.++|++++|+|++ ++|++++. |++|++|++.. +.++..+.+|...|.+++|+|++++|+++
T Consensus 9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~-----D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~ 83 (319)
T 3frx_A 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASR-----DKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA 83 (319)
T ss_dssp EEEEECCCSSCEEEEEECSSCTTEEEEEET-----TSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEEccccceEEEEEccCCCccEEEEecC-----CccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEE
Confidence 466789999999999999965 89999954 99999999864 34567788999999999999999999999
Q ss_pred eCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceE
Q 037555 122 SRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVT 201 (298)
Q Consensus 122 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~ 201 (298)
+.|++|++||+.+ ...+..+.+|...|.+++|+|++.+|++++.|+.|++||++.. .+. .+.+|...|.
T Consensus 84 s~D~~v~~wd~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~~---~~~~h~~~v~ 152 (319)
T 3frx_A 84 SWDKTLRLWDVAT-------GETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLA---TLLGHNDWVS 152 (319)
T ss_dssp ETTSEEEEEETTT-------TEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC-EEE---EECCCSSCEE
T ss_pred eCCCEEEEEECCC-------CCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEE---EEeccCCcEE
Confidence 9999999999987 5677888999999999999999999999999999999999753 333 5667999999
Q ss_pred EEEEeecccc-CCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcce
Q 037555 202 ALSWVGLDRQ-KNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTM 280 (298)
Q Consensus 202 ~~~~~~~~~~-~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 280 (298)
++.|.|.... .++.++++++.|+.|++||++.. ..... +.+|...|.+++|+|++ .
T Consensus 153 ~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~-------------~~~~~---~~~h~~~v~~~~~sp~g-------~ 209 (319)
T 3frx_A 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF-------------QIEAD---FIGHNSNINTLTASPDG-------T 209 (319)
T ss_dssp EEEECCC------CCEEEEEETTSCEEEEETTTT-------------EEEEE---ECCCCSCEEEEEECTTS-------S
T ss_pred EEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc-------------hhhee---ecCCCCcEEEEEEcCCC-------C
Confidence 9999996521 12358999999999999999765 33333 45799999999999999 8
Q ss_pred EEEeeeCCCcEEEeEec
Q 037555 281 QLASCGADNTVRVFQVN 297 (298)
Q Consensus 281 ~l~s~~~d~~i~iw~~~ 297 (298)
+|++++.|+.|++||+.
T Consensus 210 ~l~s~~~dg~i~iwd~~ 226 (319)
T 3frx_A 210 LIASAGKDGEIMLWNLA 226 (319)
T ss_dssp EEEEEETTCEEEEEETT
T ss_pred EEEEEeCCCeEEEEECC
Confidence 99999999999999974
No 29
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.2e-36 Score=243.04 Aligned_cols=241 Identities=20% Similarity=0.279 Sum_probs=202.5
Q ss_pred CcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCc
Q 037555 14 NDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAA 82 (298)
Q Consensus 14 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d 82 (298)
.....++.+|.+.|.++.+. |.+..++++ ++|+ ....+.+|...|.+++|+|++++|++++. |
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s-~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-----d 86 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFS-PNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD-----D 86 (312)
T ss_dssp CEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-----T
T ss_pred ceeEEEEcccCCcEEEEEEC-CCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECC-----C
Confidence 44567789999999999999 556666665 3553 46778899999999999999999999954 9
Q ss_pred eEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc
Q 037555 83 AEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP 162 (298)
Q Consensus 83 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 162 (298)
+.|++||+++++.+..+.+|...|.+++|+|++++|++++.|+.|++||++. ...+..+..|..+|.+++|+|
T Consensus 87 ~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~-------~~~~~~~~~~~~~v~~~~~~~ 159 (312)
T 4ery_A 87 KTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT-------GKCLKTLPAHSDPVSAVHFNR 159 (312)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT-------CCEEEEECCCSSCEEEEEECT
T ss_pred CEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-------CEEEEEecCCCCcEEEEEEcC
Confidence 9999999999999999999999999999999999999999999999999987 556778888999999999999
Q ss_pred CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCC
Q 037555 163 FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTP 242 (298)
Q Consensus 163 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 242 (298)
++++|++++.||.|++||+++++.+..+ ...+...+..++|+|++ .+|++++.|+.|++||++++
T Consensus 160 ~~~~l~~~~~d~~i~~wd~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----~~l~~~~~d~~i~iwd~~~~-------- 224 (312)
T 4ery_A 160 DGSLIVSSSYDGLCRIWDTASGQCLKTL--IDDDNPPVSFVKFSPNG-----KYILAATLDNTLKLWDYSKG-------- 224 (312)
T ss_dssp TSSEEEEEETTSCEEEEETTTCCEEEEE--CCSSCCCEEEEEECTTS-----SEEEEEETTTEEEEEETTTT--------
T ss_pred CCCEEEEEeCCCcEEEEECCCCceeeEE--eccCCCceEEEEECCCC-----CEEEEEcCCCeEEEEECCCC--------
Confidence 9999999999999999999988766532 23456789999999998 79999999999999999876
Q ss_pred CCCCcceeeeeccCCcccceE--EEEEee-cCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 243 APSTANIIIRFDPFACHVAAV--NRMAWK-THEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~v--~~~~~~-~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
..+..+. +|...+ ....++ +++ .+|++++.||.|++||++
T Consensus 225 -----~~~~~~~---~~~~~~~~~~~~~~~~~~-------~~l~sg~~dg~i~vwd~~ 267 (312)
T 4ery_A 225 -----KCLKTYT---GHKNEKYCIFANFSVTGG-------KWIVSGSEDNLVYIWNLQ 267 (312)
T ss_dssp -----EEEEEEC---SSCCSSSCCCEEEECSSS-------CEEEECCTTSCEEEEETT
T ss_pred -----cEEEEEE---ecCCceEEEEEEEEeCCC-------cEEEEECCCCEEEEEECC
Confidence 4444433 344332 223344 455 799999999999999975
No 30
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=6e-37 Score=267.59 Aligned_cols=261 Identities=18% Similarity=0.233 Sum_probs=205.2
Q ss_pred ccccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEec-------cCCCceEEEEE
Q 037555 3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLY-------GHGNELFSLCC 64 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~-------~h~~~v~~~~~ 64 (298)
+..++.++..+++.+..+.+|.+.|.++.|+ |.+..++++ ++|+ ....+. +|.+.|.+++|
T Consensus 169 D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fs-pdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~ 247 (611)
T 1nr0_A 169 DNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN-PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW 247 (611)
T ss_dssp TSCEEEEETTTBEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEE
T ss_pred CCeEEEEECCCCeEeeeeccccCceEEEEEC-CCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEE
Confidence 4566778878888889999999999999999 567677765 4664 344553 79999999999
Q ss_pred cCCCCEEEeEeccCCCCceEEEEEEcCCceeee-------------------------------------------cccc
Q 037555 65 DHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMG-------------------------------------------RLQS 101 (298)
Q Consensus 65 s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~-------------------------------------------~~~~ 101 (298)
+|++++|++++. |++|++||+.+++.+. .+.+
T Consensus 248 spdg~~l~s~s~-----D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~g 322 (611)
T 1nr0_A 248 SPDGTKIASASA-----DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYG 322 (611)
T ss_dssp CTTSSEEEEEET-----TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECC
T ss_pred CCCCCEEEEEeC-----CCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcC
Confidence 999999999954 8999999998765443 2347
Q ss_pred ccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccc----------------e-----------------------
Q 037555 102 HSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEID----------------Y----------------------- 142 (298)
Q Consensus 102 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----------------~----------------------- 142 (298)
|...|.+++|+|++++|++++.|+.|++||+......... .
T Consensus 323 h~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~ 402 (611)
T 1nr0_A 323 HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDS 402 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCT
T ss_pred CCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccc
Confidence 8899999999999999999999999999998753210000 0
Q ss_pred ----------e---------------------------eeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCc
Q 037555 143 ----------Q---------------------------LIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKS 185 (298)
Q Consensus 143 ----------~---------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~ 185 (298)
. .+..+ .|...+.+++|+|++++|++|+.|+.|++||+.+..
T Consensus 403 ~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~-~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~ 481 (611)
T 1nr0_A 403 SKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV-PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS 481 (611)
T ss_dssp TSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEE-ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE
T ss_pred cceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeee-ecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCc
Confidence 0 00011 134567899999999999999999999999998754
Q ss_pred ceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEE
Q 037555 186 SVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNR 265 (298)
Q Consensus 186 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 265 (298)
.. .+.. ..|...|++++|+|++ .+|++++.|+.|++|++.+.. +.... ....+|...|.+
T Consensus 482 ~~-~~~~-~~h~~~v~~v~fspdg-----~~las~s~d~~v~~w~~~~~~------------~~~~~-~~~~~H~~~V~~ 541 (611)
T 1nr0_A 482 VS-EVKT-IVHPAEITSVAFSNNG-----AFLVATDQSRKVIPYSVANNF------------ELAHT-NSWTFHTAKVAC 541 (611)
T ss_dssp EE-EEEE-EECSSCEEEEEECTTS-----SEEEEEETTSCEEEEEGGGTT------------EESCC-CCCCCCSSCEEE
T ss_pred ee-eeec-cCCCCceEEEEECCCC-----CEEEEEcCCCCEEEEEcCCCC------------ceeee-eeeeecccceeE
Confidence 32 1223 4688999999999999 799999999999999997621 11111 113359999999
Q ss_pred EEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 266 MAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 266 ~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
++|+|++ .+|++++.|++|++||++
T Consensus 542 v~fspdg-------~~lasgs~D~~v~lW~~~ 566 (611)
T 1nr0_A 542 VSWSPDN-------VRLATGSLDNSVIVWNMN 566 (611)
T ss_dssp EEECTTS-------SEEEEEETTSCEEEEETT
T ss_pred EEECCCC-------CEEEEEECCCcEEEEECC
Confidence 9999999 899999999999999974
No 31
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-36 Score=248.56 Aligned_cols=250 Identities=20% Similarity=0.304 Sum_probs=206.4
Q ss_pred CcccccccCCCCCceeeeccCCCccccccc------CCCC-------ceEEeccCCCceEEEEEcCC--CCEEEeEeccC
Q 037555 14 NDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-------ESHKLYGHGNELFSLCCDHQ--GKLVASSCKAQ 78 (298)
Q Consensus 14 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-------~~~~~~~h~~~v~~~~~s~~--~~~l~~~~~~~ 78 (298)
|+.+..+.+|.+.|.++.|+ |.+..++++ .+|+ .+..+.+|...|++++|+++ +++|++++.
T Consensus 1 G~~~~~~~~h~~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-- 77 (379)
T 3jrp_A 1 GSMVVIANAHNELIHDAVLD-YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY-- 77 (379)
T ss_dssp ----CCEEECCCCEEEEEEC-SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET--
T ss_pred CCccEEecCCcccEEEEEEc-CCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc--
Confidence 56788899999999999999 556666665 3564 34677899999999999987 999999954
Q ss_pred CCCceEEEEEEcCCce--eeeccccccccEEEEEEcCC--CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCc
Q 037555 79 STAAAEIWLWEVGSWK--AMGRLQSHSLTVTQIRFSHD--DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRI 154 (298)
Q Consensus 79 ~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 154 (298)
|+.|++||+.+++ .+..+..|...|.+++|+|+ +.+|++++.|+.|++||+..... .....+..|...
T Consensus 78 ---dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~-----~~~~~~~~~~~~ 149 (379)
T 3jrp_A 78 ---DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-----TSPIIIDAHAIG 149 (379)
T ss_dssp ---TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSC-----CCEEEEECCTTC
T ss_pred ---CCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCc-----eeeEEecCCCCc
Confidence 8999999999886 66777889999999999999 99999999999999999987532 234456789999
Q ss_pred eEEEEEcc-------------CCCEEEEeeCCCeEEEEEccCCccee-eeeecCCCCCceEEEEEeec---cccCCccEE
Q 037555 155 IWSCSWNP-------------FGHEFATGSRDKTVKIWAVENKSSVK-QILALPPFNSSVTALSWVGL---DRQKNHGFL 217 (298)
Q Consensus 155 v~~~~~~~-------------~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~---~~~~~~~~l 217 (298)
|.+++|+| ++.+|++++.||.|++||+++..... ....+..|...|.+++|+|+ + .+|
T Consensus 150 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-----~~l 224 (379)
T 3jrp_A 150 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR-----SYL 224 (379)
T ss_dssp EEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS-----EEE
T ss_pred eEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCC-----CeE
Confidence 99999999 68999999999999999998765432 33356778999999999999 6 799
Q ss_pred EEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 218 AVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 218 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
++++.||.|++||++..... ....+.....|...|.+++|+|++ .+|++++.||.|++|+++
T Consensus 225 ~s~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~~~~~~v~~~~~s~~g-------~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 225 ASVSQDRTCIIWTQDNEQGP-----------WKKTLLKEEKFPDVLWRASWSLSG-------NVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp EEEETTSCEEEEEESSTTSC-----------CEEEESSSSCCSSCEEEEEECSSS-------CCEEEEESSSSEEEEEEE
T ss_pred EEEeCCCEEEEEeCCCCCcc-----------ceeeeeccccCCCcEEEEEEcCCC-------CEEEEecCCCcEEEEeCC
Confidence 99999999999999875321 122232345588999999999999 899999999999999985
No 32
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.3e-36 Score=264.03 Aligned_cols=243 Identities=24% Similarity=0.384 Sum_probs=207.0
Q ss_pred cccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC----ceEEeccCCCceEEEEEcCCCCEEEe
Q 037555 4 ATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP----ESHKLYGHGNELFSLCCDHQGKLVAS 73 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~----~~~~~~~h~~~v~~~~~s~~~~~l~~ 73 (298)
+.++.++. ++..+..+.+|...+.++.+. |.+..++.+ .+|+ .+..+.+|...|.+++|+|++++|++
T Consensus 325 ~~i~~w~~-~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 402 (577)
T 2ymu_A 325 KTVKLWNR-NGQHLQTLTGHSSSVWGVAFS-PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIAS 402 (577)
T ss_dssp SCEEEEET-TSCEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred CeEEEEeC-CCCeeEEEeCCCCCEEEEEEC-CCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEE
Confidence 34555553 455677888999999999998 556666554 3453 57788899999999999999999999
Q ss_pred EeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCC
Q 037555 74 SCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKR 153 (298)
Q Consensus 74 ~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 153 (298)
++ .|+.|++||. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||.. .+.+..+..|..
T Consensus 403 ~~-----~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~--------~~~~~~~~~~~~ 468 (577)
T 2ymu_A 403 AS-----DDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN--------GQLLQTLTGHSS 468 (577)
T ss_dssp EE-----TTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT--------SCEEEEEECCSS
T ss_pred Ee-----CCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC--------CCEEEEEcCCCC
Confidence 95 4899999996 477788889999999999999999999999999999999964 456777889999
Q ss_pred ceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555 154 IIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 154 ~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 233 (298)
.|.+++|+|++++|++++.|+.|++||. +++.+. .+.+|...|++++|+|++ .+|++++.|+.|++||..
T Consensus 469 ~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~---~~~~h~~~v~~l~~s~dg-----~~l~s~~~dg~v~lwd~~- 538 (577)
T 2ymu_A 469 SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ---TLTGHSSSVRGVAFSPDG-----QTIASASDDKTVKLWNRN- 538 (577)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEE---EEECCSSCEEEEEECTTS-----SCEEEEETTSEEEEECTT-
T ss_pred CEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEE---EEeCCCCCEEEEEEcCCC-----CEEEEEECcCEEEEEeCC-
Confidence 9999999999999999999999999996 455555 666799999999999998 799999999999999953
Q ss_pred cccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555 234 NRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ 295 (298)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~ 295 (298)
+ +.+.. +.+|...|++++|+||+ ++|+|++.|++|++||
T Consensus 539 ~-------------~~~~~---~~~h~~~v~~~~fs~dg-------~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 539 G-------------QLLQT---LTGHSSSVWGVAFSPDG-------QTIASASSDKTVKLWN 577 (577)
T ss_dssp S-------------CEEEE---EECCSSCEEEEEECTTS-------SCEEEEETTSCEEEEC
T ss_pred C-------------CEEEE---EcCCCCCEEEEEEcCCC-------CEEEEEeCCCEEEEeC
Confidence 3 34444 45799999999999999 8999999999999997
No 33
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.6e-36 Score=245.06 Aligned_cols=255 Identities=19% Similarity=0.296 Sum_probs=188.0
Q ss_pred CcccccccCCCCCceeeeccCCCccccccc------CCCC----------ceEEeccCCCceEEEEEcCCCCEEEeEecc
Q 037555 14 NDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP----------ESHKLYGHGNELFSLCCDHQGKLVASSCKA 77 (298)
Q Consensus 14 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~----------~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~ 77 (298)
.....+|++|.+.|.+++|.|..++.++++ ++|+ +...+.+|...|.+++|+|++++|++++.
T Consensus 28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~- 106 (340)
T 4aow_A 28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW- 106 (340)
T ss_dssp EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc-
Confidence 345567999999999999997667777765 5674 35678899999999999999999999954
Q ss_pred CCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCc---------c--------
Q 037555 78 QSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGE---------I-------- 140 (298)
Q Consensus 78 ~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---------~-------- 140 (298)
|+.|++|+............+...+..+.+++++++|++++.|+.+++||+....... .
T Consensus 107 ----d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~ 182 (340)
T 4aow_A 107 ----DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPN 182 (340)
T ss_dssp ----TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSC
T ss_pred ----cccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccC
Confidence 9999999998766555554455555555555555555555555555555543211000 0
Q ss_pred ---------------------ceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCc
Q 037555 141 ---------------------DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSS 199 (298)
Q Consensus 141 ---------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~ 199 (298)
.......+.+|...|++++|+|++++|++++.||.|++||+++.+.+. .+. +...
T Consensus 183 ~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~---~~~-~~~~ 258 (340)
T 4aow_A 183 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLY---TLD-GGDI 258 (340)
T ss_dssp SSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEE---EEE-CSSC
T ss_pred CCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceee---eec-CCce
Confidence 144566677899999999999999999999999999999999988776 343 4568
Q ss_pred eEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcc
Q 037555 200 VTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRT 279 (298)
Q Consensus 200 v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 279 (298)
+.+++|+|++ .+++++.|+.|++||++........ ..........+|...|++++|+|++
T Consensus 259 v~~~~~~~~~------~~~~~~~d~~i~iwd~~~~~~~~~~-------~~~~~~~~~~~h~~~v~~l~~s~dg------- 318 (340)
T 4aow_A 259 INALCFSPNR------YWLCAATGPSIKIWDLEGKIIVDEL-------KQEVISTSSKAEPPQCTSLAWSADG------- 318 (340)
T ss_dssp EEEEEECSSS------SEEEEEETTEEEEEETTTTEEEEEE-------CCC-------CCCCCEEEEEECTTS-------
T ss_pred EEeeecCCCC------ceeeccCCCEEEEEECCCCeEEEec-------cccceeeeccCCCCCEEEEEECCCC-------
Confidence 9999999976 4667778999999999765211100 0000011245688999999999999
Q ss_pred eEEEeeeCCCcEEEeEec
Q 037555 280 MQLASCGADNTVRVFQVN 297 (298)
Q Consensus 280 ~~l~s~~~d~~i~iw~~~ 297 (298)
.+|++|+.||.|+|||++
T Consensus 319 ~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 319 QTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp SEEEEEETTSCEEEEEEE
T ss_pred CEEEEEeCCCEEEEEeCC
Confidence 899999999999999986
No 34
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=6.7e-37 Score=246.39 Aligned_cols=221 Identities=19% Similarity=0.277 Sum_probs=174.3
Q ss_pred EeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce--eeeccccccccEEEEEEcC--CCCEEEEEeCCCe
Q 037555 51 KLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK--AMGRLQSHSLTVTQIRFSH--DDNLLLSVSRDRQ 126 (298)
Q Consensus 51 ~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~ 126 (298)
.+.+|.+.|++++|+|+|++||+|+. |+.|+|||+.+++ .+..+.+|...|.+++|+| ++++|++++.|++
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~-----D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~ 82 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSS-----DRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRK 82 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEET-----TTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSC
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeC-----CCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCE
Confidence 45689999999999999999999964 9999999998764 4567889999999999986 4899999999999
Q ss_pred EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC--CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEE
Q 037555 127 FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF--GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALS 204 (298)
Q Consensus 127 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~ 204 (298)
|++||++... ......+..|...|.+++|+|+ +.+|++++.|+.|++||++..........+..|...+.+++
T Consensus 83 v~iWd~~~~~-----~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~ 157 (316)
T 3bg1_A 83 VIIWREENGT-----WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVS 157 (316)
T ss_dssp EEEECCSSSC-----CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCE
T ss_pred EEEEECCCCc-----ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEE
Confidence 9999998632 2345667789999999999997 78999999999999999987643322235667889999999
Q ss_pred Eeecccc------------CCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555 205 WVGLDRQ------------KNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE 272 (298)
Q Consensus 205 ~~~~~~~------------~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 272 (298)
|+|+... ..+.+|++|+.|+.|++||++.. .....+..+.+|...|.+++|+|++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~-------------~~~~~~~~l~~h~~~V~~v~~sp~~ 224 (316)
T 3bg1_A 158 WAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED-------------GQWKEEQKLEAHSDWVRDVAWAPSI 224 (316)
T ss_dssp ECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTT-------------SCEEEEECCBCCSSCEEEEECCCCS
T ss_pred EccccCCccccccccccCccccceEEEecCCCeEEEEEeCCC-------------CccceeeecccCCCceEEEEecCCC
Confidence 9997310 01258999999999999999643 2122233467899999999999984
Q ss_pred CCCCCcceEEEeeeCCCcEEEeEec
Q 037555 273 KPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 273 ~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
. .++.+|++++.|++|++|+++
T Consensus 225 ~---~~~~~las~s~D~~v~iw~~~ 246 (316)
T 3bg1_A 225 G---LPTSTIASCSQDGRVFIWTCD 246 (316)
T ss_dssp S---CSCCEEEEEETTCEEEEEECS
T ss_pred C---CCCceEEEEcCCCeEEEEEcc
Confidence 1 011689999999999999874
No 35
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.2e-35 Score=244.59 Aligned_cols=246 Identities=18% Similarity=0.244 Sum_probs=192.5
Q ss_pred CCCCCceeeeccCCCccccccc-----CCCC-----ceEEeccCC------------------CceEEEEEcCCCCEEEe
Q 037555 22 SVPDAVPAVFTEPPIEDQLAWH-----TLWP-----ESHKLYGHG------------------NELFSLCCDHQGKLVAS 73 (298)
Q Consensus 22 ~~~~~v~~~~~~~~~~~~~~~~-----~~~~-----~~~~~~~h~------------------~~v~~~~~s~~~~~l~~ 73 (298)
+|...|.++.|+ |+++.++++ .+|. .+..+.+|. ..|++++|+|++++|++
T Consensus 62 ~h~~~V~~v~fs-pdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFS-NDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEEC-TTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEEC-CCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 699999999999 566777665 2442 244454443 24999999999999999
Q ss_pred EeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCC
Q 037555 74 SCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKR 153 (298)
Q Consensus 74 ~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 153 (298)
++ .|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||++. ......+. +..
T Consensus 141 ~~-----~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~-------~~~~~~~~-~~~ 207 (393)
T 1erj_A 141 GA-----EDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT-------GQCSLTLS-IED 207 (393)
T ss_dssp EE-----TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-------TEEEEEEE-CSS
T ss_pred Ec-----CCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC-------CeeEEEEE-cCC
Confidence 95 489999999999999999999999999999999999999999999999999986 34444443 567
Q ss_pred ceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCcceeeee----ecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEE
Q 037555 154 IIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVKQIL----ALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIEL 228 (298)
Q Consensus 154 ~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~v 228 (298)
.+.+++|+| ++++|++++.|+.|++||++++.....+. ...+|...|.+++|+|++ .+|++|+.|+.|++
T Consensus 208 ~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-----~~l~s~s~d~~v~~ 282 (393)
T 1erj_A 208 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-----QSVVSGSLDRSVKL 282 (393)
T ss_dssp CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS-----SEEEEEETTSEEEE
T ss_pred CcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC-----CEEEEEeCCCEEEE
Confidence 899999999 89999999999999999999887665331 124688999999999998 79999999999999
Q ss_pred EEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 229 WSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 229 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
||++......... ......+... +.+|...|.+++|+|++ .+|++++.|+.|++||++
T Consensus 283 wd~~~~~~~~~~~-~~~~~~~~~~---~~~h~~~v~~~~~~~~~-------~~l~sgs~D~~v~iwd~~ 340 (393)
T 1erj_A 283 WNLQNANNKSDSK-TPNSGTCEVT---YIGHKDFVLSVATTQND-------EYILSGSKDRGVLFWDKK 340 (393)
T ss_dssp EEC----------------CEEEE---EECCSSCEEEEEECGGG-------CEEEEEETTSEEEEEETT
T ss_pred EECCCCCCccccc-CCCCCcceEE---EecccCcEEEEEECCCC-------CEEEEEeCCCeEEEEECC
Confidence 9998653221100 0000122222 44799999999999999 899999999999999974
No 36
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=8e-37 Score=252.13 Aligned_cols=248 Identities=15% Similarity=0.210 Sum_probs=202.8
Q ss_pred eeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEecc
Q 037555 9 VERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKA 77 (298)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~ 77 (298)
++.....+..++.+|.+.|.++.|. |.+..++++ ++|+ ....+.+|...|.+++|+|++++|++++
T Consensus 51 ~~~~~~~~~~~l~gH~~~V~~~~~s-p~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~-- 127 (380)
T 3iz6_a 51 FNPTDLVCCRTLQGHSGKVYSLDWT-PEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGG-- 127 (380)
T ss_dssp CCCCCCEEEEEECCCSSCEEEEEEC-TTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECC--
T ss_pred cccceeEEeecccccccEEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEee--
Confidence 3344556678899999999999999 566677765 5674 4677889999999999999999999995
Q ss_pred CCCCceEEEEEEcCCce-------eeeccccccccEEEEEEcCC-CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEe-
Q 037555 78 QSTAAAEIWLWEVGSWK-------AMGRLQSHSLTVTQIRFSHD-DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQ- 148 (298)
Q Consensus 78 ~~~~d~~i~vw~~~~~~-------~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~- 148 (298)
.|+.|++|++.+.. ....+.+|...|.++.|.|+ +..|++++.|++|++||+.++ ..+..+
T Consensus 128 ---~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~-------~~~~~~~ 197 (380)
T 3iz6_a 128 ---LDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG-------QRISIFG 197 (380)
T ss_dssp ---SSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTC-------CEEEEEC
T ss_pred ---CCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCC-------cEEEEee
Confidence 59999999986532 33457889999999999996 457999999999999999873 334433
Q ss_pred ----eccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCC-cceeeeeecCCCCCceEEEEEeeccccCCccEEEEeec
Q 037555 149 ----EAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENK-SSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGME 222 (298)
Q Consensus 149 ----~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~ 222 (298)
.+|...|.+++|++ ++++|++|+.|+.|++||++.. .... .+.+|...|.+++|+|++ .+|++|+.
T Consensus 198 ~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~---~~~~h~~~v~~v~~~p~~-----~~l~s~s~ 269 (380)
T 3iz6_a 198 SEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVR---TYHGHEGDINSVKFFPDG-----QRFGTGSD 269 (380)
T ss_dssp CCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCE---EECCCSSCCCEEEECTTS-----SEEEEECS
T ss_pred cccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceE---EECCcCCCeEEEEEecCC-----CeEEEEcC
Confidence 56889999999987 7899999999999999999843 4444 667899999999999998 79999999
Q ss_pred CCcEEEEEeeecccccccCCCCCCcceeeeecc----CCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 223 SGVIELWSISVNRTNDVSTPAPSTANIIIRFDP----FACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 223 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
|+.|++||++++ ..+..+.. ...+...|++++|+|++ .+|++++.||.|++||+.
T Consensus 270 D~~i~lwd~~~~-------------~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-------~~l~~g~~dg~i~vwd~~ 328 (380)
T 3iz6_a 270 DGTCRLFDMRTG-------------HQLQVYNREPDRNDNELPIVTSVAFSISG-------RLLFAGYSNGDCYVWDTL 328 (380)
T ss_dssp SSCEEEEETTTT-------------EEEEEECCCCSSSCCSSCSCSEEEECSSS-------SEEEEECTTSCEEEEETT
T ss_pred CCeEEEEECCCC-------------cEEEEecccccccccccCceEEEEECCCC-------CEEEEEECCCCEEEEECC
Confidence 999999999876 33333321 11233458999999999 899999999999999963
No 37
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.6e-35 Score=239.87 Aligned_cols=212 Identities=15% Similarity=0.312 Sum_probs=178.7
Q ss_pred ceEEeccCCCceEEEEE-----cC-CCCEEEeEeccCCCCceEEEEEEcCCc-------eeeeccccccccEEEEEEcCC
Q 037555 48 ESHKLYGHGNELFSLCC-----DH-QGKLVASSCKAQSTAAAEIWLWEVGSW-------KAMGRLQSHSLTVTQIRFSHD 114 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~-----s~-~~~~l~~~~~~~~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~ 114 (298)
....+.+|.+.|++++| ++ ++++|++|+. |++|++||+.+. .+...+.+|...|.+++|+|+
T Consensus 13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~-----D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~ 87 (343)
T 2xzm_R 13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSR-----DKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQE 87 (343)
T ss_dssp EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEET-----TSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSS
T ss_pred eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcC-----CCEEEEEECCcCCcccccccccchhccCCCceEEEEECCC
Confidence 46778999999999999 76 8999999964 999999998643 455678899999999999999
Q ss_pred CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC
Q 037555 115 DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP 194 (298)
Q Consensus 115 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 194 (298)
+.++++++.|++|++||+++ ...+..+.+|...|.+++|+|++++|++++.|+.|++||+... .........
T Consensus 88 ~~~l~s~s~D~~v~lwd~~~-------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~ 159 (343)
T 2xzm_R 88 NCFAISSSWDKTLRLWDLRT-------GTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKE 159 (343)
T ss_dssp TTEEEEEETTSEEEEEETTS-------SCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTT
T ss_pred CCEEEEEcCCCcEEEEECCC-------CcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeeccc
Confidence 99999999999999999987 5567788899999999999999999999999999999999843 223222334
Q ss_pred CCCCceEEEEEeeccc-----cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEee
Q 037555 195 PFNSSVTALSWVGLDR-----QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWK 269 (298)
Q Consensus 195 ~~~~~v~~~~~~~~~~-----~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 269 (298)
.|...|.+++|+|.+. .+.+.++++++.|+.|++||.. . ..... +.+|...|.+++|+
T Consensus 160 ~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~-------------~~~~~---~~~h~~~v~~~~~s 222 (343)
T 2xzm_R 160 NHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-F-------------QIRYT---FKAHESNVNHLSIS 222 (343)
T ss_dssp SCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-T-------------EEEEE---EECCSSCEEEEEEC
T ss_pred CCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-C-------------ceeEE---EcCccccceEEEEC
Confidence 6888999999999762 1122589999999999999943 1 23333 44699999999999
Q ss_pred cCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 270 THEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 270 ~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
|++ .+|++++.|+.|++||+
T Consensus 223 ~~g-------~~l~sgs~dg~v~iwd~ 242 (343)
T 2xzm_R 223 PNG-------KYIATGGKDKKLLIWDI 242 (343)
T ss_dssp TTS-------SEEEEEETTCEEEEEES
T ss_pred CCC-------CEEEEEcCCCeEEEEEC
Confidence 999 89999999999999997
No 38
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=5e-35 Score=237.79 Aligned_cols=235 Identities=17% Similarity=0.276 Sum_probs=183.8
Q ss_pred EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCc----eeeeccccccccEEEEEEcC--CCCEEEEEeC
Q 037555 50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSW----KAMGRLQSHSLTVTQIRFSH--DDNLLLSVSR 123 (298)
Q Consensus 50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~ 123 (298)
..+.+|.+.|++++|+|++++|++++ .|+.|++||+.++ +....+.+|...|.+++|+| ++++|++++.
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~ 79 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCS-----SDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASY 79 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEE-----TTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEET
T ss_pred ccCcccccceeEEEEcCCCCEEEEee-----CCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcC
Confidence 45679999999999999999999995 4899999999876 45666788999999999999 6999999999
Q ss_pred CCeEEEEEeccCCCCc--cceeeeEEeeccCCceEEEEEccC--CCEEEEeeCCCeEEEEEccCCccee-----------
Q 037555 124 DRQFSVFAIQRTGTGE--IDYQLIARQEAHKRIIWSCSWNPF--GHEFATGSRDKTVKIWAVENKSSVK----------- 188 (298)
Q Consensus 124 dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~----------- 188 (298)
||.|++||+....... ........+..|...|.+++|+|+ +++|++++.||.|++||+++.+...
T Consensus 80 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 159 (351)
T 3f3f_A 80 DKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVL 159 (351)
T ss_dssp TSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred CCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccc
Confidence 9999999998753211 112567778889999999999999 9999999999999999987654221
Q ss_pred ----------------------------------------------eeeecCCCCCceEEEEEeeccccCCccEEEEeec
Q 037555 189 ----------------------------------------------QILALPPFNSSVTALSWVGLDRQKNHGFLAVGME 222 (298)
Q Consensus 189 ----------------------------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~ 222 (298)
.+..+.+|...|++++|+|++. ....+|++|+.
T Consensus 160 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~-~~~~~l~s~~~ 238 (351)
T 3f3f_A 160 SIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIG-RWYQLIATGCK 238 (351)
T ss_dssp SCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSS-CSSEEEEEEET
T ss_pred ccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCC-CcceEEEEEcC
Confidence 1334567888999999999861 00148999999
Q ss_pred CCcEEEEEeeecccccccCCCCC------------------------------CcceeeeeccCCcccceEEEEEeecCC
Q 037555 223 SGVIELWSISVNRTNDVSTPAPS------------------------------TANIIIRFDPFACHVAAVNRMAWKTHE 272 (298)
Q Consensus 223 dg~i~vwd~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~ 272 (298)
||.|++||++............. .......+..+.+|...|++++|+|++
T Consensus 239 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~ 318 (351)
T 3f3f_A 239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG 318 (351)
T ss_dssp TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSS
T ss_pred CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCC
Confidence 99999999987532211100000 001123333456799999999999999
Q ss_pred CCCCCcceEEEeeeCCCcEEEeEec
Q 037555 273 KPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 273 ~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.+|++++.||.|++|+++
T Consensus 319 -------~~l~s~~~dg~v~iw~~~ 336 (351)
T 3f3f_A 319 -------TILSSAGDDGKVRLWKAT 336 (351)
T ss_dssp -------CCEEEEETTSCEEEEEEC
T ss_pred -------CEEEEecCCCcEEEEecC
Confidence 899999999999999986
No 39
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.1e-35 Score=263.41 Aligned_cols=239 Identities=20% Similarity=0.372 Sum_probs=200.0
Q ss_pred cccccCCCCCceeeeccCCCccccccc------CCCC----------ceEEeccCCCceEEEEEcCCCCEEEeEeccCCC
Q 037555 17 LDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP----------ESHKLYGHGNELFSLCCDHQGKLVASSCKAQST 80 (298)
Q Consensus 17 ~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~----------~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~ 80 (298)
...+.+|.+.|.++.+.|...+.++++ ++|+ ....+.+|...|.+++|+|++++|++|+.
T Consensus 375 ~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~---- 450 (694)
T 3dm0_A 375 KGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW---- 450 (694)
T ss_dssp EEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEET----
T ss_pred hhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeC----
Confidence 346889999999999997766777765 4674 24678899999999999999999999964
Q ss_pred CceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEE
Q 037555 81 AAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW 160 (298)
Q Consensus 81 ~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 160 (298)
|+.|+|||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||...... .........|...|.+++|
T Consensus 451 -Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~----~~~~~~~~~h~~~v~~~~~ 525 (694)
T 3dm0_A 451 -DGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK----YTISEGGEGHRDWVSCVRF 525 (694)
T ss_dssp -TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE----EEECSSTTSCSSCEEEEEE
T ss_pred -CCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc----eeeccCCCCCCCcEEEEEE
Confidence 99999999999999999999999999999999999999999999999999754210 1111122468889999999
Q ss_pred ccCC--CEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccccc
Q 037555 161 NPFG--HEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTND 238 (298)
Q Consensus 161 ~~~~--~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~ 238 (298)
+|++ ..|++++.|+.|++||+++.+... .+.+|...|++++|+|++ .+|++|+.||.|++||++++
T Consensus 526 ~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~---~~~~h~~~v~~v~~spdg-----~~l~sg~~Dg~i~iwd~~~~---- 593 (694)
T 3dm0_A 526 SPNTLQPTIVSASWDKTVKVWNLSNCKLRS---TLAGHTGYVSTVAVSPDG-----SLCASGGKDGVVLLWDLAEG---- 593 (694)
T ss_dssp CSCSSSCEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTS-----SEEEEEETTSBCEEEETTTT----
T ss_pred eCCCCcceEEEEeCCCeEEEEECCCCcEEE---EEcCCCCCEEEEEEeCCC-----CEEEEEeCCCeEEEEECCCC----
Confidence 9976 689999999999999999887766 677899999999999998 79999999999999999876
Q ss_pred ccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 239 VSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+.+..+. +...|.+++|+|++ .+|++++ |+.|++||++
T Consensus 594 ---------~~~~~~~----~~~~v~~~~~sp~~-------~~l~~~~-~~~i~iwd~~ 631 (694)
T 3dm0_A 594 ---------KKLYSLE----ANSVIHALCFSPNR-------YWLCAAT-EHGIKIWDLE 631 (694)
T ss_dssp ---------EEEECCB----CSSCEEEEEECSSS-------SEEEEEE-TTEEEEEETT
T ss_pred ---------ceEEEec----CCCcEEEEEEcCCC-------cEEEEEc-CCCEEEEECC
Confidence 4444332 45679999999998 6766655 6679999974
No 40
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.5e-35 Score=254.32 Aligned_cols=245 Identities=23% Similarity=0.397 Sum_probs=208.2
Q ss_pred cccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC----ceEEeccCCCceEEEEEcCCCCEEEe
Q 037555 4 ATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP----ESHKLYGHGNELFSLCCDHQGKLVAS 73 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~----~~~~~~~h~~~v~~~~~s~~~~~l~~ 73 (298)
+.++.++ .+++.+..+.+|...|..+.+. |.+..+++. ++|+ .+..+.+|...|.+++|+|++++|++
T Consensus 284 ~~i~~w~-~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 361 (577)
T 2ymu_A 284 KTVKLWN-RNGQLLQTLTGHSSSVWGVAFS-PDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIAS 361 (577)
T ss_dssp SCEEEEE-TTSCEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred CEEEEEe-CCCcEEEEEecCCCCeEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEE
Confidence 3445555 3567788889999999999998 555565554 4563 46778899999999999999999999
Q ss_pred EeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCC
Q 037555 74 SCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKR 153 (298)
Q Consensus 74 ~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 153 (298)
++ .|+.|++|+. +++.+..+.+|...|.+++|+|++++|++++.|+.|++||.. .+.+..+..|..
T Consensus 362 ~~-----~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~--------~~~~~~~~~~~~ 427 (577)
T 2ymu_A 362 AS-----DDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--------GQLLQTLTGHSS 427 (577)
T ss_dssp EE-----TTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT--------CCEEEEEECCSS
T ss_pred Ee-----CCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC--------CCEEEEecCCCC
Confidence 95 4899999996 477788889999999999999999999999999999999954 456777889999
Q ss_pred ceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555 154 IIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 154 ~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 233 (298)
.|++++|+|++++|++++.|+.|++||.. .+.+. .+.+|...|++++|+|++ .+|++++.|+.|++||..
T Consensus 428 ~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~---~~~~~~~~v~~~~~spd~-----~~las~~~d~~i~iw~~~- 497 (577)
T 2ymu_A 428 SVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDG-----QTIASASDDKTVKLWNRN- 497 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEE---EEECCSSCEEEEEECTTS-----CEEEEEETTSEEEEEETT-
T ss_pred CeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEE---EEcCCCCCEEEEEEcCCC-----CEEEEEeCCCEEEEEcCC-
Confidence 99999999999999999999999999975 44444 566789999999999998 799999999999999953
Q ss_pred cccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 234 NRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+ +.+.. +.+|...|++++|+|++ .+|++++.|+.|++||+.
T Consensus 498 ~-------------~~~~~---~~~h~~~v~~l~~s~dg-------~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 498 G-------------QLLQT---LTGHSSSVRGVAFSPDG-------QTIASASDDKTVKLWNRN 538 (577)
T ss_dssp S-------------CEEEE---EECCSSCEEEEEECTTS-------SCEEEEETTSEEEEECTT
T ss_pred C-------------CEEEE---EeCCCCCEEEEEEcCCC-------CEEEEEECcCEEEEEeCC
Confidence 3 44444 44799999999999999 899999999999999853
No 41
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.2e-35 Score=239.88 Aligned_cols=220 Identities=20% Similarity=0.310 Sum_probs=183.0
Q ss_pred ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcC--CceeeeccccccccEEEEEEcCC--CCEEEEEeC
Q 037555 48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVG--SWKAMGRLQSHSLTVTQIRFSHD--DNLLLSVSR 123 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~ 123 (298)
.+..+.+|.+.|++++|+|++++|++++. |+.|++|++. +++.+..+.+|...|.+++|+++ +++|++++.
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~ 77 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSS-----DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY 77 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEET-----TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEEC-----CCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc
Confidence 35677899999999999999999999954 8999999997 66777888899999999999987 899999999
Q ss_pred CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC--CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceE
Q 037555 124 DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF--GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVT 201 (298)
Q Consensus 124 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~ 201 (298)
||.|++||+.... ......+..|...|.+++|+|+ +.+|++++.|+.|++||++........ .+..|...|.
T Consensus 78 dg~v~iwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~v~ 151 (379)
T 3jrp_A 78 DGKVLIWKEENGR-----WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVN 151 (379)
T ss_dssp TSCEEEEEEETTE-----EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE-EEECCTTCEE
T ss_pred CCEEEEEEcCCCc-----eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE-EecCCCCceE
Confidence 9999999998732 2366777789999999999999 999999999999999999987544332 4456889999
Q ss_pred EEEEeeccc--------cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecC--
Q 037555 202 ALSWVGLDR--------QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTH-- 271 (298)
Q Consensus 202 ~~~~~~~~~--------~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-- 271 (298)
+++|+|... .+++.++++++.|+.|++||++.... .......+.+|...|.+++|+|+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------------~~~~~~~~~~h~~~v~~~~~sp~~~ 219 (379)
T 3jrp_A 152 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ------------TYVLESTLEGHSDWVRDVAWSPTVL 219 (379)
T ss_dssp EEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT------------EEEEEEEECCCSSCEEEEEECCCCS
T ss_pred EEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc------------ceeeEEEEecccCcEeEEEECCCCC
Confidence 999999410 00117999999999999999987531 11222235579999999999999
Q ss_pred -CCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 272 -EKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 272 -~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+ .+|++++.||.|++||++
T Consensus 220 ~~-------~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 220 LR-------SYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp SS-------EEEEEEETTSCEEEEEES
T ss_pred CC-------CeEEEEeCCCEEEEEeCC
Confidence 7 899999999999999975
No 42
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=2.9e-35 Score=241.35 Aligned_cols=206 Identities=10% Similarity=0.091 Sum_probs=170.0
Q ss_pred CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEecc
Q 037555 55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQR 134 (298)
Q Consensus 55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 134 (298)
+...+.+++|+|||++|++++. +.|++|+|||+.+++.+..+. |...|.+++|+|||+++++++.++ +++|+...
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~---~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~ 206 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASS---KVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSS-LEVISTVT 206 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEES---CSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSC-EEEEETTT
T ss_pred cccCEEEEEEcCCCCEEEEEEC---CCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEecccee-EEEEEecc
Confidence 4456899999999999987764 568999999999999888876 778899999999999999998655 55666554
Q ss_pred CCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCC----eEEEEEccCCccee-eeeecCCCCCceEEEEEeecc
Q 037555 135 TGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDK----TVKIWAVENKSSVK-QILALPPFNSSVTALSWVGLD 209 (298)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~~wd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~ 209 (298)
.. .........|...|.+++|+|++.++++++.|+ .+++||+....... ....+..|...|++++|+|++
T Consensus 207 ~~-----~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg 281 (365)
T 4h5i_A 207 GS-----CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKG 281 (365)
T ss_dssp CC-----EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTS
T ss_pred Cc-----ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCC
Confidence 32 222334456888999999999999999999877 68889987654322 223556788999999999999
Q ss_pred ccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCC
Q 037555 210 RQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADN 289 (298)
Q Consensus 210 ~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~ 289 (298)
.+|++|+.|+.|+|||++++ +++..+ +.+|..+|++|+|+||+ .+|+|++.|+
T Consensus 282 -----~~lasgs~D~~V~iwd~~~~-------------~~~~~~--~~gH~~~V~~v~fSpdg-------~~laS~S~D~ 334 (365)
T 4h5i_A 282 -----ELAVLASNDNSIALVKLKDL-------------SMSKIF--KQAHSFAITEVTISPDS-------TYVASVSAAN 334 (365)
T ss_dssp -----CEEEEEETTSCEEEEETTTT-------------EEEEEE--TTSSSSCEEEEEECTTS-------CEEEEEETTS
T ss_pred -----CceEEEcCCCEEEEEECCCC-------------cEEEEe--cCcccCCEEEEEECCCC-------CEEEEEeCCC
Confidence 79999999999999999876 555554 45899999999999999 8999999999
Q ss_pred cEEEeEec
Q 037555 290 TVRVFQVN 297 (298)
Q Consensus 290 ~i~iw~~~ 297 (298)
+|||||+.
T Consensus 335 tvrvw~ip 342 (365)
T 4h5i_A 335 TIHIIKLP 342 (365)
T ss_dssp EEEEEECC
T ss_pred eEEEEEcC
Confidence 99999984
No 43
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=7e-34 Score=230.33 Aligned_cols=249 Identities=14% Similarity=0.222 Sum_probs=208.2
Q ss_pred ccccceeeeecCccccccc-----CCCCCceeeeccCCCccccccc------CCCC-------ceEEeccCCCceEEEEE
Q 037555 3 AATRETVERHGNDGLDTLE-----SVPDAVPAVFTEPPIEDQLAWH------TLWP-------ESHKLYGHGNELFSLCC 64 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~------~~~~-------~~~~~~~h~~~v~~~~~ 64 (298)
++.++.++..+++....+. +|...|..+.+.| .+..++.+ .+|+ ....+.+|...|.+++|
T Consensus 71 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~ 149 (337)
T 1gxr_A 71 KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI 149 (337)
T ss_dssp BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECT-TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEE
T ss_pred CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEE
Confidence 3456667776666444443 7889999999995 55555544 3442 35667789999999999
Q ss_pred cCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceee
Q 037555 65 DHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQL 144 (298)
Q Consensus 65 s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 144 (298)
+|++++|++++ .|+.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|++||++. ...
T Consensus 150 ~~~~~~l~~~~-----~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~-------~~~ 217 (337)
T 1gxr_A 150 SPDSKVCFSCC-----SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE-------GRQ 217 (337)
T ss_dssp CTTSSEEEEEE-----TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-------TEE
T ss_pred CCCCCEEEEEe-----CCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCC-------Cce
Confidence 99999999995 489999999999999999999999999999999999999999999999999987 344
Q ss_pred eEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCC
Q 037555 145 IARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESG 224 (298)
Q Consensus 145 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg 224 (298)
...+ .+...+.+++|+|++++|++++.|+.|++||+++.+.. .+..|...|.+++|+|++ .+|++++.||
T Consensus 218 ~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~-----~~l~~~~~dg 287 (337)
T 1gxr_A 218 LQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY----QLHLHESCVLSLKFAYCG-----KWFVSTGKDN 287 (337)
T ss_dssp EEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE----EECCCSSCEEEEEECTTS-----SEEEEEETTS
T ss_pred Eeee-cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE----EEcCCccceeEEEECCCC-----CEEEEecCCC
Confidence 4444 47788999999999999999999999999999987643 455688999999999998 7999999999
Q ss_pred cEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEecC
Q 037555 225 VIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVNV 298 (298)
Q Consensus 225 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~~ 298 (298)
.|++||+.++ ...... .|...|.+++|+|++ .+|++++.||.|++|++.+
T Consensus 288 ~i~~~~~~~~-------------~~~~~~----~~~~~v~~~~~s~~~-------~~l~~~~~dg~i~iw~~~~ 337 (337)
T 1gxr_A 288 LLNAWRTPYG-------------ASIFQS----KESSSVLSCDISVDD-------KYIVTGSGDKKATVYEVIY 337 (337)
T ss_dssp EEEEEETTTC-------------CEEEEE----ECSSCEEEEEECTTS-------CEEEEEETTSCEEEEEEEC
T ss_pred cEEEEECCCC-------------eEEEEe----cCCCcEEEEEECCCC-------CEEEEecCCCeEEEEEEeC
Confidence 9999999876 333322 378899999999999 8999999999999999864
No 44
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=7.2e-36 Score=250.76 Aligned_cols=213 Identities=16% Similarity=0.174 Sum_probs=173.8
Q ss_pred CceEEeccCCCceEEEEEcC-CCCEEEeEeccCCCCceEEEEEEcCCcee--eeccccccccEEEEEEcC-CCCEEEEEe
Q 037555 47 PESHKLYGHGNELFSLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGSWKA--MGRLQSHSLTVTQIRFSH-DDNLLLSVS 122 (298)
Q Consensus 47 ~~~~~~~~h~~~v~~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 122 (298)
.......+|...|+||+|+| ++.+||+|+ .||.|+|||+.+++. ...+.+|...|++++|+| ++++|++++
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs-----~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s 184 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGS-----KGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASS 184 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEE-----TTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEEC
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEe-----CCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEe
Confidence 34566778999999999999 567899995 499999999987654 344668999999999998 788999999
Q ss_pred CCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEE
Q 037555 123 RDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTA 202 (298)
Q Consensus 123 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~ 202 (298)
.||+|++||++... .........+...+.+++|+|++.+|++|+.||.|++||++.. .+. .+.+|...|.+
T Consensus 185 ~D~~v~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~---~~~~h~~~v~~ 255 (435)
T 4e54_B 185 MEGTTRLQDFKGNI-----LRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELW---NLRMHKKKVTH 255 (435)
T ss_dssp SSSCEEEEETTSCE-----EEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCC---CSBCCSSCEEE
T ss_pred CCCEEEEeeccCCc-----eeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeE---EEecccceEEe
Confidence 99999999987521 1222222234456789999999999999999999999999753 334 67789999999
Q ss_pred EEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEE
Q 037555 203 LSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQL 282 (298)
Q Consensus 203 ~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 282 (298)
++|+|++. .++++|+.|+.|++||+++... ...+....+|...|++++|+|++ .+|
T Consensus 256 v~~~p~~~----~~~~s~s~d~~v~iwd~~~~~~-------------~~~~~~~~~h~~~v~~~~~spdg-------~~l 311 (435)
T 4e54_B 256 VALNPCCD----WFLATASVDQTVKIWDLRQVRG-------------KASFLYSLPHRHPVNAACFSPDG-------ARL 311 (435)
T ss_dssp EEECTTCS----SEEEEEETTSBCCEEETTTCCS-------------SSCCSBCCBCSSCEEECCBCTTS-------SEE
T ss_pred eeecCCCc----eEEEEecCcceeeEEecccccc-------------cceEEEeeeccccccceeECCCC-------Cee
Confidence 99999874 6899999999999999987632 22222245799999999999999 899
Q ss_pred EeeeCCCcEEEeEec
Q 037555 283 ASCGADNTVRVFQVN 297 (298)
Q Consensus 283 ~s~~~d~~i~iw~~~ 297 (298)
++++.|+.|++||++
T Consensus 312 ~s~~~D~~i~iwd~~ 326 (435)
T 4e54_B 312 LTTDQKSEIRVYSAS 326 (435)
T ss_dssp EEEESSSCEEEEESS
T ss_pred EEEcCCCEEEEEECC
Confidence 999999999999974
No 45
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=8.3e-36 Score=244.35 Aligned_cols=263 Identities=14% Similarity=0.208 Sum_probs=206.8
Q ss_pred cccceeeeecCcccccccC-----CCCCceeeeccCCC---ccccccc------CCCC-----ceEEeccCCCceEEEEE
Q 037555 4 ATRETVERHGNDGLDTLES-----VPDAVPAVFTEPPI---EDQLAWH------TLWP-----ESHKLYGHGNELFSLCC 64 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~---~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~ 64 (298)
+.++.++..+++.+..+.. |...|.++.+.|.. +..++++ .+|+ .+..+.+|...|.+++|
T Consensus 44 ~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~ 123 (366)
T 3k26_A 44 NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKF 123 (366)
T ss_dssp TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEE
T ss_pred CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEE
Confidence 3567778888887777764 45678999998553 3455554 3553 46778899999999999
Q ss_pred cC-CCCEEEeEeccCCCCceEEEEEEcCCceeeecc---ccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc
Q 037555 65 DH-QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRL---QSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI 140 (298)
Q Consensus 65 s~-~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 140 (298)
+| ++.+|++++ .|+.|++||+.+++.+..+ ..|...|.+++|+|++++|++++.||.|++||++.......
T Consensus 124 ~~~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 198 (366)
T 3k26_A 124 HPRDPNLLLSVS-----KDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNA 198 (366)
T ss_dssp CSSCTTEEEEEE-----TTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHH
T ss_pred CCCCCCEEEEEe-----CCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccc
Confidence 99 899999995 4899999999999888877 68999999999999999999999999999999986321000
Q ss_pred ---------------------ceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcc-----------ee
Q 037555 141 ---------------------DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSS-----------VK 188 (298)
Q Consensus 141 ---------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-----------~~ 188 (298)
..........|...|.+++|+ +++|++++.|+.|++||+++... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~ 276 (366)
T 3k26_A 199 IKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVT 276 (366)
T ss_dssp HHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEE
T ss_pred cceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchh
Confidence 001122333488999999998 77999999999999999987654 12
Q ss_pred eeeecCCCCCceEEEEEeec--cccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcc--cceEE
Q 037555 189 QILALPPFNSSVTALSWVGL--DRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACH--VAAVN 264 (298)
Q Consensus 189 ~~~~~~~~~~~v~~~~~~~~--~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~ 264 (298)
.+..+..|...|.+++|+|+ + .+|++|+.||.|++||+.+++... ..... +..| ...|+
T Consensus 277 ~~~~~~~~~~~v~~~~~s~~~~~-----~~l~~~~~dg~i~vwd~~~~~~~~---------~~~~~---~~~~~~~~~v~ 339 (366)
T 3k26_A 277 ILGRFDYSQCDIWYMRFSMDFWQ-----KMLALGNQVGKLYVWDLEVEDPHK---------AKCTT---LTHHKCGAAIR 339 (366)
T ss_dssp EEEEEECSSCCSSCCCCEECTTS-----SEEEEECTTSCEEEEECCSSSGGG---------CEEEE---ECCTTCCSCEE
T ss_pred eeccccccCCcEEEEEEcCCCCC-----cEEEEEecCCcEEEEECCCCCCcc---------ccceE---EcccccCCceE
Confidence 23355678888999999998 7 799999999999999998763221 12223 3345 79999
Q ss_pred EEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 265 RMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 265 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+++|+|++ .+|++++.||.|++||+.
T Consensus 340 ~~~~s~~~-------~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 340 QTSFSRDS-------SILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEECTTS-------SEEEEEETTSEEEEEEC-
T ss_pred EEEeCCCC-------CeEEEEeCCCEEEEEEec
Confidence 99999999 899999999999999985
No 46
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-35 Score=253.34 Aligned_cols=270 Identities=9% Similarity=0.029 Sum_probs=202.0
Q ss_pred ccccceeeeecCccc----ccccCCCCCceeeeccCC-----Cccccccc------CCCCc----------------eEE
Q 037555 3 AATRETVERHGNDGL----DTLESVPDAVPAVFTEPP-----IEDQLAWH------TLWPE----------------SHK 51 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~-----~~~~~~~~------~~~~~----------------~~~ 51 (298)
++.++.++..+++.. ..+.+|.+.|..+.|.|. .+..++++ ++|+. ...
T Consensus 182 D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~ 261 (524)
T 2j04_B 182 SSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLT 261 (524)
T ss_dssp CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEE
T ss_pred CceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEE
Confidence 456778888887753 346788899999999964 23456654 45642 236
Q ss_pred eccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce-eeeccccccccEEEE--EEcCCC-CEEEEEeCCCeE
Q 037555 52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK-AMGRLQSHSLTVTQI--RFSHDD-NLLLSVSRDRQF 127 (298)
Q Consensus 52 ~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i 127 (298)
+.+|...|++++|++++ .|++|+ .||+|++||+++++ +...+.+|...|.++ .|+|++ ++|++++.|++|
T Consensus 262 l~~h~~~v~sv~~s~~~-~lasgs-----~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tv 335 (524)
T 2j04_B 262 LSLADSLITTFDFLSPT-TVVCGF-----KNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYF 335 (524)
T ss_dssp ECCTTTCEEEEEESSSS-EEEEEE-----TTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEE
T ss_pred EEcCCCCEEEEEecCCC-eEEEEe-----CCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeE
Confidence 78899999999999864 799995 49999999998764 445578899999999 578887 899999999999
Q ss_pred EEEEeccCCCCccceeeeEEeeccCC--ceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEE
Q 037555 128 SVFAIQRTGTGEIDYQLIARQEAHKR--IIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSW 205 (298)
Q Consensus 128 ~iwd~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~ 205 (298)
++||++. ......+.+|.. .|.+++|+|+++.|++++.|++|++||+++...+. .+.+|...|++++|
T Consensus 336 klWD~~~-------~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~---~l~gH~~~V~sva~ 405 (524)
T 2j04_B 336 YIFNPKD-------IATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVH---PLVSRETTITAIGV 405 (524)
T ss_dssp EEECGGG-------HHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCE---EEEECSSCEEEEEC
T ss_pred EEEECCC-------CCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccce---eeecCCCceEEEEe
Confidence 9999986 334444555543 57899999999999999999999999999987766 45579999999999
Q ss_pred eeccccCCccEEEEeecCCcEEEEEeeeccccc--------------ccCCCCCCc-------------c-eeeeeccCC
Q 037555 206 VGLDRQKNHGFLAVGMESGVIELWSISVNRTND--------------VSTPAPSTA-------------N-IIIRFDPFA 257 (298)
Q Consensus 206 ~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~--------------~~~~~~~~~-------------~-~~~~~~~~~ 257 (298)
+|++ .+|++|+.|+.|++||+....... .....+... . .-..+..+.
T Consensus 406 Sp~g-----~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~ 480 (524)
T 2j04_B 406 SRLH-----PMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKID 480 (524)
T ss_dssp CSSC-----CBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC------------
T ss_pred CCCC-----CeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeec
Confidence 9998 799999999999999975431110 000011000 0 011123356
Q ss_pred cccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 258 CHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 258 ~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+|...|.+++|+|++. .+.+|++|+.||.|+||+++
T Consensus 481 gh~~~V~~Vafsp~~~----~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 481 AHGINITCTKWNETSA----GGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp -CCCSCCCEEECCSTT----TTTEEEEECTTSEEEEEECS
T ss_pred CCCceEEEEECCCCCC----ccHHHHhhccCceEEEEEcc
Confidence 7999999999999961 12599999999999999986
No 47
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.6e-35 Score=240.80 Aligned_cols=279 Identities=14% Similarity=0.133 Sum_probs=203.2
Q ss_pred cccccceeeeecC--cccccccCCCCCceeeeccCCCccccccc------CCCC--------ceEEeccCCCceEEEEEc
Q 037555 2 YAATRETVERHGN--DGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP--------ESHKLYGHGNELFSLCCD 65 (298)
Q Consensus 2 ~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~--------~~~~~~~h~~~v~~~~~s 65 (298)
.++.++.++..++ +.+..+.+|...|.++.+. |.+..++++ .+|+ ....+.+|...|.+++|+
T Consensus 31 ~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~ 109 (377)
T 3dwl_C 31 ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWA-PKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWS 109 (377)
T ss_dssp SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEEC-TTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECC
T ss_pred CCCEEEEEEccCCceEEEEEEecCCceEEEEEEe-CCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEEC
Confidence 3567888999988 7899999999999999999 456666654 4554 356677899999999999
Q ss_pred CCCCEEEeEeccCCCCceEEEEEEcCCce---eeecccc-ccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCc--
Q 037555 66 HQGKLVASSCKAQSTAAAEIWLWEVGSWK---AMGRLQS-HSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGE-- 139 (298)
Q Consensus 66 ~~~~~l~~~~~~~~~~d~~i~vw~~~~~~---~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-- 139 (298)
|++++|++++ .|+.|++||+++++ ....+.. |...|.+++|+|++++|++++.|+.|++||+.......
T Consensus 110 ~~~~~l~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 184 (377)
T 3dwl_C 110 PNEDKFAVGS-----GARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKP 184 (377)
T ss_dssp TTSSCCEEEE-----SSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CC
T ss_pred CCCCEEEEEe-----cCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCc
Confidence 9999999995 48999999999876 3566776 99999999999999999999999999999996322110
Q ss_pred ---------cceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCccee-eeeecCCCCCceEEEEEeecc
Q 037555 140 ---------IDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVK-QILALPPFNSSVTALSWVGLD 209 (298)
Q Consensus 140 ---------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~ 209 (298)
.....+..+ .|...|.+++|+|++++|++++.||.|++||+++.+... .+..+..|...|.+++|+|++
T Consensus 185 ~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 263 (377)
T 3dwl_C 185 EASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES 263 (377)
T ss_dssp CSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT
T ss_pred cccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC
Confidence 013455555 899999999999999999999999999999999887611 122566788999999999998
Q ss_pred ccCCccEEEEeecCCcEEEEEeeecccccccC-C-CCC-C--------------ccee------eee-------------
Q 037555 210 RQKNHGFLAVGMESGVIELWSISVNRTNDVST-P-APS-T--------------ANII------IRF------------- 253 (298)
Q Consensus 210 ~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~-~-~~~-~--------------~~~~------~~~------------- 253 (298)
.+|++|+.++.+ +|+........... . ... . ...+ ..+
T Consensus 264 -----~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 337 (377)
T 3dwl_C 264 -----AIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSIS 337 (377)
T ss_dssp -----EEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------C
T ss_pred -----CEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhcccccccc
Confidence 788888766655 77665322110000 0 000 0 0000 001
Q ss_pred ccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 254 DPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 254 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
.....|...|+++++.+... .....|+|||.||.|++||+
T Consensus 338 ~~~~~H~~~i~~~~~~~~~~---~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 338 SLPTVHQNMIATLRPYAGTP---GNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp CCSSSCSSCEEEEEEEEEET---TEEEEEEEEETTSEEEEECC
T ss_pred ccCccccceeEEEeccCCCC---CceEEEEeecCCCcEEEecC
Confidence 11234999999999876541 00127999999999999986
No 48
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=5.7e-35 Score=244.05 Aligned_cols=253 Identities=16% Similarity=0.196 Sum_probs=200.0
Q ss_pred ccccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEE
Q 037555 3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLV 71 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l 71 (298)
++.++.++..+++....+..| ..+....+. +.+..++++ .+|+ ....+.+|...|++++|+|++++|
T Consensus 77 d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 154 (420)
T 3vl1_A 77 DGHDFLFNTIIRDGSKMLKRA-DYTAVDTAK-LQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEAL 154 (420)
T ss_dssp TTEEEEEECCSEETTTTSCSC-CEEEEEEEC-SSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEE
T ss_pred CCcEEEEEecccceeeEEecC-CceEEEEEe-cCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEE
Confidence 456777888888888888877 333443444 666666665 3554 345567999999999999999999
Q ss_pred EeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeec-
Q 037555 72 ASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEA- 150 (298)
Q Consensus 72 ~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~- 150 (298)
++++. |+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||++. ...+..+..
T Consensus 155 ~s~s~-----d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~-------~~~~~~~~~~ 222 (420)
T 3vl1_A 155 ISSSQ-----DMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT-------GTTIHTFNRK 222 (420)
T ss_dssp EEEET-----TSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-------TEEEEEECBT
T ss_pred EEEeC-----CCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC-------CceeEEeecC
Confidence 99954 89999999999999999999999999999999999999999999999999987 344444443
Q ss_pred --cC---------------------CceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555 151 --HK---------------------RIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG 207 (298)
Q Consensus 151 --~~---------------------~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (298)
+. ..+.+++|+|++++|++++.||.|++||+++.+....+ ...|...|.+++|+|
T Consensus 223 ~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~~~ 300 (420)
T 3vl1_A 223 ENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQL--PSKFTCSCNSLTVDG 300 (420)
T ss_dssp TBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEE--CCTTSSCEEEEEECS
T ss_pred CCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEc--ccccCCCceeEEEeC
Confidence 33 34445556788999999999999999999988766533 235788999999999
Q ss_pred ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC
Q 037555 208 LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA 287 (298)
Q Consensus 208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~ 287 (298)
++. .+|++|+.||.|++||+++... .+..+. ..|...|.++.| +++ .+|++++.
T Consensus 301 ~~~----~~l~~g~~dg~i~vwd~~~~~~------------~~~~~~--~~~~~~v~~~~~-~~~-------~~l~s~~~ 354 (420)
T 3vl1_A 301 NNA----NYIYAGYENGMLAQWDLRSPEC------------PVGEFL--INEGTPINNVYF-AAG-------ALFVSSGF 354 (420)
T ss_dssp SCT----TEEEEEETTSEEEEEETTCTTS------------CSEEEE--ESTTSCEEEEEE-ETT-------EEEEEETT
T ss_pred CCC----CEEEEEeCCCeEEEEEcCCCcC------------chhhhh--ccCCCCceEEEe-CCC-------CEEEEecC
Confidence 982 3999999999999999987632 122322 126778888855 566 79999999
Q ss_pred CCcEEEeEec
Q 037555 288 DNTVRVFQVN 297 (298)
Q Consensus 288 d~~i~iw~~~ 297 (298)
|+.|++|++.
T Consensus 355 d~~v~iw~~~ 364 (420)
T 3vl1_A 355 DTSIKLDIIS 364 (420)
T ss_dssp TEEEEEEEEC
T ss_pred CccEEEEecc
Confidence 9999999974
No 49
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.3e-34 Score=240.14 Aligned_cols=261 Identities=13% Similarity=0.115 Sum_probs=210.7
Q ss_pred ccccceeeeecCc------ccccccCCCCCceeeeccCC---Cc---cccccc------CCCC-----c-----eEEecc
Q 037555 3 AATRETVERHGND------GLDTLESVPDAVPAVFTEPP---IE---DQLAWH------TLWP-----E-----SHKLYG 54 (298)
Q Consensus 3 ~~~~~~~~~~~~~------~~~~~~~~~~~v~~~~~~~~---~~---~~~~~~------~~~~-----~-----~~~~~~ 54 (298)
++.++.++..+++ .+..+.+|...|.++.+.|. .+ ..++++ .+|+ . ...+.+
T Consensus 35 dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 114 (397)
T 1sq9_A 35 DGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDL 114 (397)
T ss_dssp TSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECC
T ss_pred CCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecc
Confidence 4667888888888 78899999999999999944 15 566554 3553 2 677888
Q ss_pred C-----CCceEEEEEc----CCCCE-EEeEeccCCCCceEEEEEEcCC------ceeee-----cc-------ccccccE
Q 037555 55 H-----GNELFSLCCD----HQGKL-VASSCKAQSTAAAEIWLWEVGS------WKAMG-----RL-------QSHSLTV 106 (298)
Q Consensus 55 h-----~~~v~~~~~s----~~~~~-l~~~~~~~~~~d~~i~vw~~~~------~~~~~-----~~-------~~~~~~v 106 (298)
| ...|.+++|+ |++++ |++++ .|+.|++||+.+ ++.+. .+ ..|...|
T Consensus 115 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 189 (397)
T 1sq9_A 115 LDSDMKKHSFWALKWGASNDRLLSHRLVATD-----VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA 189 (397)
T ss_dssp SCTTGGGSCEEEEEEECCC----CEEEEEEE-----TTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCC
T ss_pred cccccCCCcEEEEEEeeccCCCCceEEEEEe-----CCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCc
Confidence 8 5899999999 99999 99995 489999999998 66665 66 3488999
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeec---c---CCceEEEEEccCCCEEEEeeCC---CeEE
Q 037555 107 TQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEA---H---KRIIWSCSWNPFGHEFATGSRD---KTVK 177 (298)
Q Consensus 107 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~---~---~~~v~~~~~~~~~~~l~~~~~d---g~i~ 177 (298)
.+++|+|++ ++++++.||.|++||++. ...+..+.. | ...|.+++|+|++++|++++.| +.|+
T Consensus 190 ~~~~~~~~~-~l~~~~~dg~i~i~d~~~-------~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~ 261 (397)
T 1sq9_A 190 TSVDISERG-LIATGFNNGTVQISELST-------LRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCIT 261 (397)
T ss_dssp CEEEECTTS-EEEEECTTSEEEEEETTT-------TEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEE
T ss_pred eEEEECCCc-eEEEEeCCCcEEEEECCC-------CceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEE
Confidence 999999999 999999999999999987 566777777 8 9999999999999999999999 9999
Q ss_pred EEEccCCcceeeeeecCC-------------CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCC
Q 037555 178 IWAVENKSSVKQILALPP-------------FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAP 244 (298)
Q Consensus 178 ~wd~~~~~~~~~~~~~~~-------------~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~ 244 (298)
+||+++.+.+. .+.. |...|.+++|+|++ .+|++++.|+.|++||+++.
T Consensus 262 i~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~iwd~~~~---------- 323 (397)
T 1sq9_A 262 LYETEFGERIG---SLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-----ETLCSAGWDGKLRFWDVKTK---------- 323 (397)
T ss_dssp EEETTTCCEEE---EECBC--------CCBSBSSCEEEEEECSSS-----SEEEEEETTSEEEEEETTTT----------
T ss_pred EEECCCCcccc---eeccCcccccccccccccCCcEEEEEECCCC-----CEEEEEeCCCeEEEEEcCCC----------
Confidence 99999887766 5555 88999999999998 79999999999999999876
Q ss_pred CCcceeeeeccC---Ccc---------------cceEEEEEeecCCCC---CCCcceEEEeeeCCCcEEEeEec
Q 037555 245 STANIIIRFDPF---ACH---------------VAAVNRMAWKTHEKP---KNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 245 ~~~~~~~~~~~~---~~~---------------~~~v~~~~~~~~~~~---~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+.+..+... .+| ...|.+++|+|++.. ...++.+|++++.||.|++|+++
T Consensus 324 ---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 324 ---ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp ---EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred ---ceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence 444443300 034 899999999999610 00011499999999999999985
No 50
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=3.6e-34 Score=235.30 Aligned_cols=277 Identities=14% Similarity=0.116 Sum_probs=209.6
Q ss_pred ccccceeeeecCc--ccccccCCCCCceeeeccCCCccccccc------CCCCc-------eEEeccCCCceEEEEEcCC
Q 037555 3 AATRETVERHGND--GLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWPE-------SHKLYGHGNELFSLCCDHQ 67 (298)
Q Consensus 3 ~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~-------~~~~~~h~~~v~~~~~s~~ 67 (298)
++.++.++..+++ .+..+.+|...|..+.+.| .+..++++ .+|+. ...+.+|...|.+++|+|+
T Consensus 29 d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 107 (372)
T 1k8k_C 29 NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN 107 (372)
T ss_dssp SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTT
T ss_pred CCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeC-CCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCC
Confidence 4667888888887 8999999999999999995 56666654 35542 3334679999999999999
Q ss_pred CCEEEeEeccCCCCceEEEEEEcCCcee----eeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCC-----
Q 037555 68 GKLVASSCKAQSTAAAEIWLWEVGSWKA----MGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTG----- 138 (298)
Q Consensus 68 ~~~l~~~~~~~~~~d~~i~vw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----- 138 (298)
+++|++++ .|+.|++||+..++. ......|...|.+++|+|++++|++++.||.|++||+......
T Consensus 108 ~~~l~~~~-----~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 182 (372)
T 1k8k_C 108 EKKFAVGS-----GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAP 182 (372)
T ss_dssp SSEEEEEE-----TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCC
T ss_pred CCEEEEEe-----CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccc
Confidence 99999995 489999999987652 2333568999999999999999999999999999997522110
Q ss_pred ------ccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccC
Q 037555 139 ------EIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQK 212 (298)
Q Consensus 139 ------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 212 (298)
......+..+..|...|.+++|+|++++|++++.|+.|++||+++++.+. .+..+...|.+++|+|++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~v~~~~~~~~~--- 256 (372)
T 1k8k_C 183 TPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVA---TLASETLPLLAVTFITES--- 256 (372)
T ss_dssp BTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEE---EEECSSCCEEEEEEEETT---
T ss_pred cccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeE---EEccCCCCeEEEEEecCC---
Confidence 00145667777899999999999999999999999999999999988776 555688899999999998
Q ss_pred CccEEEEeecCCcEEEEEeee--cccccccCCCC-------------------CCccee----eeeccCCcccceEEEEE
Q 037555 213 NHGFLAVGMESGVIELWSISV--NRTNDVSTPAP-------------------STANII----IRFDPFACHVAAVNRMA 267 (298)
Q Consensus 213 ~~~~l~~g~~dg~i~vwd~~~--~~~~~~~~~~~-------------------~~~~~~----~~~~~~~~~~~~v~~~~ 267 (298)
.++++| .|+.|++|+++. +.......... ...... .......+|...|++++
T Consensus 257 --~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 333 (372)
T 1k8k_C 257 --SLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQIS 333 (372)
T ss_dssp --EEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEE
T ss_pred --CEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeE
Confidence 677777 899999999987 31000000000 000000 00111248999999999
Q ss_pred eecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 268 WKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 268 ~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
|.+... .++.+|++++.||.|++|+++
T Consensus 334 ~~~~~g---~~~~~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 334 VLSGGK---AKCSQFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp EEESTT---TSCSEEEEEETTSEEEEEEHH
T ss_pred EecCCC---cceeeEEEecCCCceEEEEec
Confidence 875430 011599999999999999974
No 51
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=237.15 Aligned_cols=271 Identities=11% Similarity=0.171 Sum_probs=208.8
Q ss_pred ccccceeeeecCcccccc-cCCCCCceeeeccCCC--ccccccc------CCCC------ceEEeccCCCceEEEE----
Q 037555 3 AATRETVERHGNDGLDTL-ESVPDAVPAVFTEPPI--EDQLAWH------TLWP------ESHKLYGHGNELFSLC---- 63 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~--~~~~~~~------~~~~------~~~~~~~h~~~v~~~~---- 63 (298)
++.++.++..+++..... .+|...|.++.|.|.. +..++++ .+|+ .+..+.+|...|.++.
T Consensus 43 d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 122 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGG 122 (357)
T ss_dssp CEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESG
T ss_pred CcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccc
Confidence 567788888888765554 3789999999999653 5666655 3453 5678889999999995
Q ss_pred --EcCCCCEEEeEeccCCCCceEEEEEEcCCce-eeeccccccc----cEEEEE----EcCCCCEEEEEeCCCeEEEEEe
Q 037555 64 --CDHQGKLVASSCKAQSTAAAEIWLWEVGSWK-AMGRLQSHSL----TVTQIR----FSHDDNLLLSVSRDRQFSVFAI 132 (298)
Q Consensus 64 --~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~-~~~~~~~~~~----~v~~~~----~~~~~~~l~~~~~dg~i~iwd~ 132 (298)
|+|++++|++++. |+.|++||+.+++ .+..+..|.. .+.+++ |+|+++++++++.||.|++||+
T Consensus 123 ~~~s~~~~~l~~~~~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~ 197 (357)
T 3i2n_A 123 LGIGEGAPEIVTGSR-----DGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDL 197 (357)
T ss_dssp GGCC-CCCEEEEEET-----TSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEET
T ss_pred cccCCCccEEEEEeC-----CCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEEC
Confidence 4689999999954 8999999999876 5666655544 888998 7889999999999999999999
Q ss_pred ccCCCCccceeeeEEeeccCCceEEEEEcc---CCCEEEEeeCCCeEEEEEccCCcceeeee--ecCCCCCceEEEEEee
Q 037555 133 QRTGTGEIDYQLIARQEAHKRIIWSCSWNP---FGHEFATGSRDKTVKIWAVENKSSVKQIL--ALPPFNSSVTALSWVG 207 (298)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~~wd~~~~~~~~~~~--~~~~~~~~v~~~~~~~ 207 (298)
+.. .. .....|...|.+++|+| ++++|++++.||.|++||+++.+....+. .+..|...|.+++|+|
T Consensus 198 ~~~-------~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 269 (357)
T 3i2n_A 198 RNM-------AL-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP 269 (357)
T ss_dssp TTT-------EE-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEET
T ss_pred ccC-------ce-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECC
Confidence 863 33 33466889999999999 89999999999999999999876655322 2336889999999999
Q ss_pred ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCC---CcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEE-
Q 037555 208 LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPS---TANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLA- 283 (298)
Q Consensus 208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~- 283 (298)
++. .++++++.||.|++||++............. .......+..+.+|...|++++|+|++ .+|+
T Consensus 270 ~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-------~~l~~ 338 (357)
T 3i2n_A 270 QNR----ELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDK-------RGLCV 338 (357)
T ss_dssp TEE----EEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSS-------TTEEE
T ss_pred CCC----cEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCC-------CeEEE
Confidence 882 3899999999999999987643321111000 001122333356799999999999999 6776
Q ss_pred eeeCCCcEEEeEec
Q 037555 284 SCGADNTVRVFQVN 297 (298)
Q Consensus 284 s~~~d~~i~iw~~~ 297 (298)
+++.|+.|++||+.
T Consensus 339 s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 339 CSSFDQTVRVLIVT 352 (357)
T ss_dssp EEETTSEEEEEEEC
T ss_pred EecCCCcEEEEECC
Confidence 89999999999985
No 52
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=3e-34 Score=254.28 Aligned_cols=265 Identities=17% Similarity=0.230 Sum_probs=200.9
Q ss_pred ccccceeeeecC-----cccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcC
Q 037555 3 AATRETVERHGN-----DGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDH 66 (298)
Q Consensus 3 ~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~ 66 (298)
++.++.|+..++ .....+.+|...|.++.++ |.+..++++ ++|+ ....+.+|...|.+++|+|
T Consensus 404 D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~ 482 (694)
T 3dm0_A 404 DKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLS-SDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSL 482 (694)
T ss_dssp TSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT
T ss_pred CCcEEEEEccCCCcccccccceecCCCCcEEEEEEC-CCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeC
Confidence 455667765543 3456789999999999999 566666665 5674 4678889999999999999
Q ss_pred CCCEEEeEeccCCCCceEEEEEEcCCceeeec---cccccccEEEEEEcCCC--CEEEEEeCCCeEEEEEeccCCCCccc
Q 037555 67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR---LQSHSLTVTQIRFSHDD--NLLLSVSRDRQFSVFAIQRTGTGEID 141 (298)
Q Consensus 67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~---~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~ 141 (298)
++++|++++. |++|++||......... ..+|...|.+++|+|++ ..+++++.|+.|++||++.
T Consensus 483 ~~~~l~s~s~-----D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~------- 550 (694)
T 3dm0_A 483 DNRQIVSASR-----DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN------- 550 (694)
T ss_dssp TSSCEEEEET-----TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT-------
T ss_pred CCCEEEEEeC-----CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCC-------
Confidence 9999999964 99999999865433222 35689999999999986 5899999999999999987
Q ss_pred eeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee
Q 037555 142 YQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM 221 (298)
Q Consensus 142 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~ 221 (298)
......+..|...|.+++|+|++++|++++.||.|++||+++++.+. .+. +...+.+++|+|++ .+++++
T Consensus 551 ~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~sp~~-----~~l~~~- 620 (694)
T 3dm0_A 551 CKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY---SLE-ANSVIHALCFSPNR-----YWLCAA- 620 (694)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEE---CCB-CSSCEEEEEECSSS-----SEEEEE-
T ss_pred CcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE---Eec-CCCcEEEEEEcCCC-----cEEEEE-
Confidence 56677888999999999999999999999999999999999987765 443 45789999999987 566655
Q ss_pred cCCcEEEEEeeecccccccCCCCCCccee---eeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 222 ESGVIELWSISVNRTNDVSTPAPSTANII---IRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 222 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.++.|++||+++................. ........+...+++++|+|++ .+|++|+.||+|++|++.
T Consensus 621 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg-------~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 621 TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADG-------STLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTS-------SEEEEEETTSEEEEEEC-
T ss_pred cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCC-------CEEEEEcCCCeEEEEecc
Confidence 46679999998763221110000000000 0000011122347899999999 899999999999999985
No 53
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.9e-34 Score=237.78 Aligned_cols=250 Identities=18% Similarity=0.261 Sum_probs=207.7
Q ss_pred ccccceeeeecCcccccccC-CCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCE
Q 037555 3 AATRETVERHGNDGLDTLES-VPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKL 70 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~ 70 (298)
++.++.++..+|+....+.. |...|.++.+.| .+..++.+ .+|+ .+..+.+|...|.+++|+ +..
T Consensus 112 d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~ 188 (401)
T 4aez_A 112 ERNVYVWNADSGSVSALAETDESTYVASVKWSH-DGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHV 188 (401)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTCCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTE
T ss_pred CCeEEEeeCCCCcEeEeeecCCCCCEEEEEECC-CCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCE
Confidence 45677888888888887776 788999999995 56666555 3553 477888999999999994 579
Q ss_pred EEeEeccCCCCceEEEEEEcC-CceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEee
Q 037555 71 VASSCKAQSTAAAEIWLWEVG-SWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQE 149 (298)
Q Consensus 71 l~~~~~~~~~~d~~i~vw~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 149 (298)
|++++ .|+.|++||+. ....+..+.+|...|.+++|+|++++|++++.|+.|++||++. ......+.
T Consensus 189 l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~-------~~~~~~~~ 256 (401)
T 4aez_A 189 LSSGS-----RSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS-------SIPKFTKT 256 (401)
T ss_dssp EEEEE-----TTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC-------SSEEEEEC
T ss_pred EEEEc-----CCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC-------CCccEEec
Confidence 99995 49999999998 4566777889999999999999999999999999999999987 45667778
Q ss_pred ccCCceEEEEEccCC-CEEEEee--CCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEE--eecCC
Q 037555 150 AHKRIIWSCSWNPFG-HEFATGS--RDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAV--GMESG 224 (298)
Q Consensus 150 ~~~~~v~~~~~~~~~-~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~--g~~dg 224 (298)
.|...|.+++|+|++ .++++++ .|+.|++||+++++... .+. +...+.+++|+|++ .++++ |+.||
T Consensus 257 ~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~---~~~-~~~~v~~~~~s~~~-----~~l~~~~g~~dg 327 (401)
T 4aez_A 257 NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVN---TVD-AGSQVTSLIWSPHS-----KEIMSTHGFPDN 327 (401)
T ss_dssp CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEE---EEE-CSSCEEEEEECSSS-----SEEEEEECTTTC
T ss_pred CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEE---EEe-CCCcEEEEEECCCC-----CeEEEEeecCCC
Confidence 899999999999966 5666655 79999999999988776 333 56789999999998 67887 55899
Q ss_pred cEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 225 VIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 225 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.|++|++.+. ...... .+.+|...|.+++|+|++ .+|++++.||.|++|++.
T Consensus 328 ~i~v~~~~~~-------------~~~~~~-~~~~h~~~v~~~~~s~dg-------~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 328 NLSIWSYSSS-------------GLTKQV-DIPAHDTRVLYSALSPDG-------RILSTAASDENLKFWRVY 379 (401)
T ss_dssp EEEEEEEETT-------------EEEEEE-EEECCSSCCCEEEECTTS-------SEEEEECTTSEEEEEECC
T ss_pred cEEEEecCCc-------------cceeEE-EecCCCCCEEEEEECCCC-------CEEEEEeCCCcEEEEECC
Confidence 9999999875 222222 245799999999999999 899999999999999974
No 54
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.8e-33 Score=231.08 Aligned_cols=237 Identities=11% Similarity=0.122 Sum_probs=195.6
Q ss_pred ccCCCCCceeeeccCCCccccccc------CCCC-------ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEE
Q 037555 20 LESVPDAVPAVFTEPPIEDQLAWH------TLWP-------ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIW 86 (298)
Q Consensus 20 ~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-------~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~ 86 (298)
+..|.+.|.++.+. |.+..++.+ .+|+ .+..+.+|...|++++|+|++++|++++. |+.|+
T Consensus 4 ~~~~~~~i~~~~~s-~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-----dg~i~ 77 (372)
T 1k8k_C 4 HSFLVEPISCHAWN-KDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT-----DRNAY 77 (372)
T ss_dssp EESCSSCCCEEEEC-TTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEET-----TSCEE
T ss_pred ecccCCCeEEEEEC-CCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcC-----CCeEE
Confidence 45688999999999 556666555 3452 56778899999999999999999999954 89999
Q ss_pred EEEcCCceeeec--cccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCC
Q 037555 87 LWEVGSWKAMGR--LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG 164 (298)
Q Consensus 87 vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 164 (298)
+||+.+++.... +..|...|.+++|+|++++|++++.|+.|++||++..... .........|...|.+++|+|++
T Consensus 78 vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~ 154 (372)
T 1k8k_C 78 VWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDW---WVCKHIKKPIRSTVLSLDWHPNS 154 (372)
T ss_dssp EEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTE---EEEEEECTTCCSCEEEEEECTTS
T ss_pred EEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcc---eeeeeeecccCCCeeEEEEcCCC
Confidence 999988765433 4668999999999999999999999999999999874321 11223335688999999999999
Q ss_pred CEEEEeeCCCeEEEEEcc------------------CCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcE
Q 037555 165 HEFATGSRDKTVKIWAVE------------------NKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVI 226 (298)
Q Consensus 165 ~~l~~~~~dg~i~~wd~~------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i 226 (298)
++|++++.||.|++||++ .++... .+..|...|.+++|+|++ .+|++++.|+.|
T Consensus 155 ~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~-----~~l~~~~~d~~i 226 (372)
T 1k8k_C 155 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMF---ESSSSCGWVHGVCFSANG-----SRVAWVSHDSTV 226 (372)
T ss_dssp SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEE---ECCCCSSCEEEEEECSSS-----SEEEEEETTTEE
T ss_pred CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheE---ecCCCCCeEEEEEECCCC-----CEEEEEeCCCEE
Confidence 999999999999999964 334444 666789999999999998 799999999999
Q ss_pred EEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 227 ELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 227 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
++||++++ +.+..+ ..|...|.+++|+|++ .+|+++ .|+.|++|+++
T Consensus 227 ~i~d~~~~-------------~~~~~~---~~~~~~v~~~~~~~~~-------~~l~~~-~d~~i~i~~~~ 273 (372)
T 1k8k_C 227 CLADADKK-------------MAVATL---ASETLPLLAVTFITES-------SLVAAG-HDCFPVLFTYD 273 (372)
T ss_dssp EEEEGGGT-------------TEEEEE---ECSSCCEEEEEEEETT-------EEEEEE-TTSSCEEEEEE
T ss_pred EEEECCCC-------------ceeEEE---ccCCCCeEEEEEecCC-------CEEEEE-eCCeEEEEEcc
Confidence 99999877 555554 3588899999999999 777776 89999999985
No 55
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.5e-35 Score=245.89 Aligned_cols=255 Identities=16% Similarity=0.156 Sum_probs=194.1
Q ss_pred cccccCCCCCceeeeccCCCccccccc------CCCCc-------eEEeccCCCceEEEEEcC-CCCEEEeEeccCCCCc
Q 037555 17 LDTLESVPDAVPAVFTEPPIEDQLAWH------TLWPE-------SHKLYGHGNELFSLCCDH-QGKLVASSCKAQSTAA 82 (298)
Q Consensus 17 ~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~-------~~~~~~h~~~v~~~~~s~-~~~~l~~~~~~~~~~d 82 (298)
.....+|...|.+++|.|.....++++ .+|+. ...+.+|.+.|++++|+| ++.+|++++ .|
T Consensus 112 ~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s-----~D 186 (435)
T 4e54_B 112 LQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASS-----ME 186 (435)
T ss_dssp CCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEEC-----SS
T ss_pred cccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEe-----CC
Confidence 344567888999999997666677665 46742 344568999999999998 688999995 59
Q ss_pred eEEEEEEcCCceeeecc--ccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEE
Q 037555 83 AEIWLWEVGSWKAMGRL--QSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW 160 (298)
Q Consensus 83 ~~i~vw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 160 (298)
++|++||++++...... ..+...+.+++|+|++++|++|+.||.|++||++. ..+..+..|...|.+++|
T Consensus 187 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~--------~~~~~~~~h~~~v~~v~~ 258 (435)
T 4e54_B 187 GTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG--------KELWNLRMHKKKVTHVAL 258 (435)
T ss_dssp SCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS--------CBCCCSBCCSSCEEEEEE
T ss_pred CEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc--------ceeEEEecccceEEeeee
Confidence 99999999865443322 23445678999999999999999999999999863 345667889999999999
Q ss_pred ccCCC-EEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccc
Q 037555 161 NPFGH-EFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDV 239 (298)
Q Consensus 161 ~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~ 239 (298)
+|++. +|++++.|+.|++||+++.+....+....+|...|++++|+|++ .+|++++.|+.|++||+.++.....
T Consensus 259 ~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg-----~~l~s~~~D~~i~iwd~~~~~~~~~ 333 (435)
T 4e54_B 259 NPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG-----ARLLTTDQKSEIRVYSASQWDCPLG 333 (435)
T ss_dssp CTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTS-----SEEEEEESSSCEEEEESSSSSSEEE
T ss_pred cCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCC-----CeeEEEcCCCEEEEEECCCCccceE
Confidence 99875 78899999999999999877665444556789999999999998 7999999999999999976532211
Q ss_pred cCCC---------------------------C---------CCcceeeeec--------c-CCcccceEEEE-EeecCCC
Q 037555 240 STPA---------------------------P---------STANIIIRFD--------P-FACHVAAVNRM-AWKTHEK 273 (298)
Q Consensus 240 ~~~~---------------------------~---------~~~~~~~~~~--------~-~~~~~~~v~~~-~~~~~~~ 273 (298)
.... + ...+.+..+. . ..+|...|.++ +|+|++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg- 412 (435)
T 4e54_B 334 LIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMG- 412 (435)
T ss_dssp ECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTS-
T ss_pred EecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCC-
Confidence 0000 0 0001111111 0 23577778887 699999
Q ss_pred CCCCcceEEEeeeCCCcEEEeEec
Q 037555 274 PKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 274 ~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.+|++++ |+.|+||+++
T Consensus 413 ------~~lasg~-d~~i~iW~~~ 429 (435)
T 4e54_B 413 ------DTLASAM-GYHILIWSQQ 429 (435)
T ss_dssp ------SCEEEEC-SSEEEECCCC
T ss_pred ------CEEEEEc-CCcEEEEECC
Confidence 7888876 8899999975
No 56
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.5e-35 Score=242.03 Aligned_cols=224 Identities=18% Similarity=0.209 Sum_probs=173.2
Q ss_pred eccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCc--eeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEE
Q 037555 52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSW--KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSV 129 (298)
Q Consensus 52 ~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 129 (298)
+..+.++|++++|+|++++|++++ .|+.|++|++.++ +.+..+.+|...|.+++|+|++++|++++.|+.|++
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~-----~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~v 81 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTT-----ATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYV 81 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCC-----SSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEE
T ss_pred EecCCCcEEEEEECCCCCEEEEec-----CCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEE
Confidence 444778999999999999999994 5899999999988 778889999999999999999999999999999999
Q ss_pred EEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCC-CCCceEEEEEeec
Q 037555 130 FAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPP-FNSSVTALSWVGL 208 (298)
Q Consensus 130 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~ 208 (298)
||+..... ......+..|...|.+++|+|++++|++++.|+.|++||+++.+.......+.. |...|.+++|+|+
T Consensus 82 wd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 157 (377)
T 3dwl_C 82 YEKRPDGT----WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPN 157 (377)
T ss_dssp C------C----CCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTT
T ss_pred EEcCCCCc----eeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCC
Confidence 99987431 224566778999999999999999999999999999999998764222225555 8999999999998
Q ss_pred cccCCccEEEEeecCCcEEEEEeeecccccccCCCC--CCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeee
Q 037555 209 DRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAP--STANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCG 286 (298)
Q Consensus 209 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~ 286 (298)
+ .+|++++.|+.|++||++............ ........+..+ +|...|.+++|+|++ .+|++++
T Consensus 158 ~-----~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~-------~~l~~~~ 224 (377)
T 3dwl_C 158 N-----VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG-------NALAYAG 224 (377)
T ss_dssp S-----SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS-------SCEEEEE
T ss_pred C-----CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC-------CEEEEEe
Confidence 8 799999999999999997543211111000 000112223334 799999999999999 8999999
Q ss_pred CCCcEEEeEec
Q 037555 287 ADNTVRVFQVN 297 (298)
Q Consensus 287 ~d~~i~iw~~~ 297 (298)
.|+.|++||++
T Consensus 225 ~d~~i~iwd~~ 235 (377)
T 3dwl_C 225 HDSSVTIAYPS 235 (377)
T ss_dssp TTTEEC-CEEC
T ss_pred CCCcEEEEECC
Confidence 99999999985
No 57
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-33 Score=230.37 Aligned_cols=259 Identities=16% Similarity=0.217 Sum_probs=205.4
Q ss_pred cccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEE
Q 037555 17 LDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEI 85 (298)
Q Consensus 17 ~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i 85 (298)
...+.+|.+.|.++.+.| .+..++++ .+|+ .+..+.+|...|.+++|+|++++|++++. |+.|
T Consensus 25 ~~~l~~h~~~v~~~~~s~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-----dg~i 98 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNK-EGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSA-----DYSI 98 (369)
T ss_dssp EEEEECCSSCEEEEEECT-TSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-----TTEE
T ss_pred cEEEEEeeceEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeC-----CCeE
Confidence 345789999999999994 56666665 3553 57788899999999999999999999954 8999
Q ss_pred EEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCC-----CeEEEEEeccCCCCcc----ceeeeEEeeccCC--c
Q 037555 86 WLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD-----RQFSVFAIQRTGTGEI----DYQLIARQEAHKR--I 154 (298)
Q Consensus 86 ~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~----~~~~~~~~~~~~~--~ 154 (298)
++||+.+++.+..+. +...|.+++|+|+++++++++.+ +.|++||+........ .......+..|.. .
T Consensus 99 ~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (369)
T 3zwl_B 99 KLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA 177 (369)
T ss_dssp EEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred EEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence 999999999888887 88999999999999999999999 9999999987543211 0113344455655 8
Q ss_pred eEEEEEccCCCEEEEeeCCCeEEEEEccC-CcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555 155 IWSCSWNPFGHEFATGSRDKTVKIWAVEN-KSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 155 v~~~~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 233 (298)
+.+++|+|++++|++++.||.|++||+++ ..... .+..|...|.+++|+|++ .+|++++.|+.|++||+++
T Consensus 178 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---~~~~~~~~v~~~~~~~~~-----~~l~~~~~d~~i~v~d~~~ 249 (369)
T 3zwl_B 178 ATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVD---SIDLHEKSISDMQFSPDL-----TYFITSSRDTNSFLVDVST 249 (369)
T ss_dssp EEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEE---EEECCSSCEEEEEECTTS-----SEEEEEETTSEEEEEETTT
T ss_pred eeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEE---EEecCCCceeEEEECCCC-----CEEEEecCCceEEEEECCC
Confidence 99999999999999999999999999998 45444 555688999999999998 7999999999999999986
Q ss_pred cccccccCCCC---------CCcc----------------------eee--------eeccCCcccceEEEEEeecCCCC
Q 037555 234 NRTNDVSTPAP---------STAN----------------------III--------RFDPFACHVAAVNRMAWKTHEKP 274 (298)
Q Consensus 234 ~~~~~~~~~~~---------~~~~----------------------~~~--------~~~~~~~~~~~v~~~~~~~~~~~ 274 (298)
........... .... .+. .+..+.+|...|.+++|+|++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~-- 327 (369)
T 3zwl_B 250 LQVLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQG-- 327 (369)
T ss_dssp CCEEEEEECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTS--
T ss_pred CceeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCC--
Confidence 54322111000 0000 000 111234688999999999999
Q ss_pred CCCcceEEEeeeCCCcEEEeEec
Q 037555 275 KNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 275 ~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.+|++++.||.|++|+++
T Consensus 328 -----~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 328 -----TSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp -----SEEEEEETTSEEEEEEEC
T ss_pred -----CEEEEEcCCCeEEEEECc
Confidence 899999999999999985
No 58
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=235.98 Aligned_cols=266 Identities=15% Similarity=0.164 Sum_probs=202.4
Q ss_pred ccccceeee----ecCc------ccccccC----------CCCCceeeeccCCCccccccc------CCCC----ceEEe
Q 037555 3 AATRETVER----HGND------GLDTLES----------VPDAVPAVFTEPPIEDQLAWH------TLWP----ESHKL 52 (298)
Q Consensus 3 ~~~~~~~~~----~~~~------~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~------~~~~----~~~~~ 52 (298)
++.++.++. .+++ ....+.. |.+.|.++.+.| .+..++.+ .+|+ .+..+
T Consensus 67 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~ 145 (425)
T 1r5m_A 67 NSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH-DGNSIVTGVENGELRLWNKTGALLNVL 145 (425)
T ss_dssp BTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT-TSSEEEEEETTSCEEEEETTSCEEEEE
T ss_pred CceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC-CCCEEEEEeCCCeEEEEeCCCCeeeec
Confidence 345666666 6666 3444433 688999999994 56666554 3453 56778
Q ss_pred ccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeee-----------------------------------
Q 037555 53 YGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMG----------------------------------- 97 (298)
Q Consensus 53 ~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~----------------------------------- 97 (298)
.+|...|.+++|+|++++|++++. |+.|++||+.+++.+.
T Consensus 146 ~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (425)
T 1r5m_A 146 NFHRAPIVSVKWNKDGTHIISMDV-----ENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKF 220 (425)
T ss_dssp CCCCSCEEEEEECTTSSEEEEEET-----TCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEE
T ss_pred cCCCccEEEEEECCCCCEEEEEec-----CCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEE
Confidence 899999999999999999999964 7888888886654332
Q ss_pred ---------------------ccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceE
Q 037555 98 ---------------------RLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIW 156 (298)
Q Consensus 98 ---------------------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 156 (298)
.+..|...|.+++|+|++++|++++.|+.|++||+.. ......+..|...|.
T Consensus 221 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~-------~~~~~~~~~~~~~i~ 293 (425)
T 1r5m_A 221 VIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN-------GNSQNCFYGHSQSIV 293 (425)
T ss_dssp EEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS-------BSCSEEECCCSSCEE
T ss_pred EEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-------CccceEecCCCccEE
Confidence 3445778899999999999999999999999999987 455667778999999
Q ss_pred EEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccc
Q 037555 157 SCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRT 236 (298)
Q Consensus 157 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~ 236 (298)
+++|+|++ ++++++.|+.|++||+++.+.+. .+..+...+.+++|+|++ .+|++++.||.|++||+++...
T Consensus 294 ~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~i~~~~~s~~~-----~~l~~~~~dg~i~i~~~~~~~~ 364 (425)
T 1r5m_A 294 SASWVGDD-KVISCSMDGSVRLWSLKQNTLLA---LSIVDGVPIFAGRISQDG-----QKYAVAFMDGQVNVYDLKKLNS 364 (425)
T ss_dssp EEEEETTT-EEEEEETTSEEEEEETTTTEEEE---EEECTTCCEEEEEECTTS-----SEEEEEETTSCEEEEECHHHHC
T ss_pred EEEECCCC-EEEEEeCCCcEEEEECCCCcEeE---ecccCCccEEEEEEcCCC-----CEEEEEECCCeEEEEECCCCcc
Confidence 99999999 99999999999999999887766 555678899999999998 7999999999999999987642
Q ss_pred ccccCCCCC----CcceeeeeccCCcccc--eEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 237 NDVSTPAPS----TANIIIRFDPFACHVA--AVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 237 ~~~~~~~~~----~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
......... .......+..+..|.. .|.+++|+|++ .+|++++.||.|++|+++
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-------~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 365 KSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAG-------NKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp --------------CEECCEEEEECCTTCCCCEEEEEECTTS-------SEEEEEESSSCCEEEECC
T ss_pred ceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCC-------ceEEEEecCceEEEEeec
Confidence 111000000 0000112223456765 99999999999 899999999999999985
No 59
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.8e-34 Score=255.21 Aligned_cols=247 Identities=21% Similarity=0.312 Sum_probs=201.6
Q ss_pred cccccCCCCCceeeeccCCCccccccc------CCCC-------ceEEeccCCCceEEEEEcCC--CCEEEeEeccCCCC
Q 037555 17 LDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-------ESHKLYGHGNELFSLCCDHQ--GKLVASSCKAQSTA 81 (298)
Q Consensus 17 ~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-------~~~~~~~h~~~v~~~~~s~~--~~~l~~~~~~~~~~ 81 (298)
+..+.+|.+.|.++.++ |.+..++++ .+|+ ....+.+|.++|++++|+|+ +++|++++.
T Consensus 2 ~~~l~gH~~~V~~l~~s-~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~----- 75 (753)
T 3jro_A 2 VVIANAHNELIHDAVLD-YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY----- 75 (753)
T ss_dssp ------CCCCEEEECCC-SSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEET-----
T ss_pred eeecccCcceeEEEEEC-CCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeC-----
Confidence 45678999999999999 556666665 3563 35678899999999999988 999999954
Q ss_pred ceEEEEEEcCCce--eeeccccccccEEEEEEcCC--CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEE
Q 037555 82 AAEIWLWEVGSWK--AMGRLQSHSLTVTQIRFSHD--DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWS 157 (298)
Q Consensus 82 d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~ 157 (298)
||.|++||+.+++ .+..+.+|...|.+++|+|+ ++.+++++.||.|++||++.... .....+..|...|.+
T Consensus 76 Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~-----~~~~~~~~~~~~v~~ 150 (753)
T 3jro_A 76 DGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT-----TSPIIIDAHAIGVNS 150 (753)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC-----CCCEEEECCSSCEEE
T ss_pred CCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC-----cceeEeecCCCceEE
Confidence 9999999999886 66777889999999999999 99999999999999999987532 234456789999999
Q ss_pred EEEcc-------------CCCEEEEeeCCCeEEEEEccCCcce-eeeeecCCCCCceEEEEEeec---cccCCccEEEEe
Q 037555 158 CSWNP-------------FGHEFATGSRDKTVKIWAVENKSSV-KQILALPPFNSSVTALSWVGL---DRQKNHGFLAVG 220 (298)
Q Consensus 158 ~~~~~-------------~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~l~~g 220 (298)
++|+| ++.+|++|+.||.|++||+++.... .....+.+|...|++++|+|+ + .++++|
T Consensus 151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~-----~~l~s~ 225 (753)
T 3jro_A 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLR-----SYLASV 225 (753)
T ss_dssp EEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSS-----EEEEEE
T ss_pred EEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCC-----CEEEEE
Confidence 99999 5899999999999999999887543 233366789999999999999 6 799999
Q ss_pred ecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 221 MESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 221 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+.||.|++||+++.... ....+.....|...|++++|+|++ .+|++++.||.|++|+++
T Consensus 226 s~Dg~I~iwd~~~~~~~-----------~~~~~~~~~~~~~~v~~l~~spdg-------~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 226 SQDRTCIIWTQDNEQGP-----------WKKTLLKEEKFPDVLWRASWSLSG-------NVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp ESSSCEEEEEESSSSSC-----------CBCCBSSSSCCSSCCCCEEECTTT-------CCEEEECSSSCEECCBCC
T ss_pred ecCCEEEEecCCCCCCc-----------ceeEEeccCCCCCceEEEEEcCCC-------CEEEEEcCCCEEEEEecC
Confidence 99999999999875321 112222245688999999999999 899999999999999975
No 60
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.1e-33 Score=225.78 Aligned_cols=232 Identities=19% Similarity=0.257 Sum_probs=197.1
Q ss_pred ccCCCCCceeeeccCCCccccccc-----CCCC--------ceEEec--cCCCceEEEEEcCCCCEEEeEeccCCCCceE
Q 037555 20 LESVPDAVPAVFTEPPIEDQLAWH-----TLWP--------ESHKLY--GHGNELFSLCCDHQGKLVASSCKAQSTAAAE 84 (298)
Q Consensus 20 ~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~--------~~~~~~--~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~ 84 (298)
..+|.+.|.++.+. |.+..++.+ .+|+ .+..+. +|...|.+++|+|++++|++++ .|+.
T Consensus 47 ~~~h~~~v~~~~~~-~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~d~~ 120 (337)
T 1gxr_A 47 TLNHGEVVCAVTIS-NPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG-----EAST 120 (337)
T ss_dssp EECCSSCCCEEEEC-SSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE-----SSSE
T ss_pred eccCCCceEEEEEe-cCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEc-----CCCc
Confidence 34799999999998 556666554 3442 233333 7999999999999999999995 4899
Q ss_pred EEEEEcCCce--eeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc
Q 037555 85 IWLWEVGSWK--AMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP 162 (298)
Q Consensus 85 i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 162 (298)
|++||+.+++ ....+..|...|.+++|+|+++++++++.||.|++||++. ......+..|...|.+++|+|
T Consensus 121 i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~-------~~~~~~~~~~~~~i~~~~~~~ 193 (337)
T 1gxr_A 121 LSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-------QTLVRQFQGHTDGASCIDISN 193 (337)
T ss_dssp EEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-------TEEEEEECCCSSCEEEEEECT
T ss_pred EEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCC-------CceeeeeecccCceEEEEECC
Confidence 9999998876 5566778999999999999999999999999999999987 566777888999999999999
Q ss_pred CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCC
Q 037555 163 FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTP 242 (298)
Q Consensus 163 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 242 (298)
++++|++++.||.|++||+++.+... .+ .+...+.+++|+|++ .++++++.++.|++||++..
T Consensus 194 ~~~~l~~~~~dg~i~~~d~~~~~~~~---~~-~~~~~v~~~~~s~~~-----~~l~~~~~~~~i~~~~~~~~-------- 256 (337)
T 1gxr_A 194 DGTKLWTGGLDNTVRSWDLREGRQLQ---QH-DFTSQIFSLGYCPTG-----EWLAVGMESSNVEVLHVNKP-------- 256 (337)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEE---EE-ECSSCEEEEEECTTS-----SEEEEEETTSCEEEEETTSS--------
T ss_pred CCCEEEEEecCCcEEEEECCCCceEe---ee-cCCCceEEEEECCCC-----CEEEEEcCCCcEEEEECCCC--------
Confidence 99999999999999999999887766 33 267889999999998 79999999999999999865
Q ss_pred CCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 243 APSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
... . +..|...|.+++|+|++ .+|++++.||.|++||++
T Consensus 257 -----~~~-~---~~~~~~~v~~~~~~~~~-------~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 257 -----DKY-Q---LHLHESCVLSLKFAYCG-------KWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp -----CEE-E---ECCCSSCEEEEEECTTS-------SEEEEEETTSEEEEEETT
T ss_pred -----CeE-E---EcCCccceeEEEECCCC-------CEEEEecCCCcEEEEECC
Confidence 221 2 34688999999999999 899999999999999974
No 61
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=9.6e-34 Score=233.96 Aligned_cols=256 Identities=12% Similarity=0.123 Sum_probs=199.5
Q ss_pred ccccceeeeecCccccccc--CCCCCceeeeccCCCccccccc------CCCC----ceEEecc---CCCceEEEEEcCC
Q 037555 3 AATRETVERHGNDGLDTLE--SVPDAVPAVFTEPPIEDQLAWH------TLWP----ESHKLYG---HGNELFSLCCDHQ 67 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~------~~~~----~~~~~~~---h~~~v~~~~~s~~ 67 (298)
++.++.++..+++....+. +|...|.++.|.|..+..++++ .+|+ .+..+.. |...|.+++|+|+
T Consensus 95 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~ 174 (383)
T 3ei3_B 95 GGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVS 174 (383)
T ss_dssp TSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETT
T ss_pred CCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCC
Confidence 4567888888888777765 6999999999996566666665 3553 3444544 4488999999999
Q ss_pred CCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCC-EEEEEeCCCeEEEEEeccCCCCccceeeeE
Q 037555 68 GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDN-LLLSVSRDRQFSVFAIQRTGTGEIDYQLIA 146 (298)
Q Consensus 68 ~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 146 (298)
+++|++++ .|+.|++||+ +++.+..+..|...|.+++|+|+++ +|++++.|+.|++||++..... ...+.
T Consensus 175 ~~~l~~~~-----~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~ 245 (383)
T 3ei3_B 175 RQMLATGD-----STGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK---NSYIA 245 (383)
T ss_dssp TTEEEEEE-----TTSEEEEEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST---TCEEE
T ss_pred CCEEEEEC-----CCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc---cceEE
Confidence 99999995 4899999999 4778888899999999999999998 9999999999999999874321 12333
Q ss_pred EeeccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCcceeeeeecC----CCCC----------ceEEEEEeecccc
Q 037555 147 RQEAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVKQILALP----PFNS----------SVTALSWVGLDRQ 211 (298)
Q Consensus 147 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~----~~~~----------~v~~~~~~~~~~~ 211 (298)
.+ .|...|.+++|+| ++++|++++.|+.|++||+++.+....+.... .+.. .+..++|+|++
T Consensus 246 ~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg-- 322 (383)
T 3ei3_B 246 EM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDD-- 322 (383)
T ss_dssp EE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCT--
T ss_pred Ee-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCc--
Confidence 33 6899999999999 99999999999999999999877665332211 1222 33345555655
Q ss_pred CCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcE
Q 037555 212 KNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTV 291 (298)
Q Consensus 212 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i 291 (298)
.+ +|+.|+.|++||+.++ +.+..+. ...|...+..++|+|++ .+|++++ |+.|
T Consensus 323 ---~~--s~s~d~~i~iwd~~~~-------------~~~~~l~-~~~~~~~~~~~~~s~~g-------~~l~s~s-d~~i 375 (383)
T 3ei3_B 323 ---QL--LLNDKRTIDIYDANSG-------------GLVHQLR-DPNAAGIISLNKFSPTG-------DVLASGM-GFNI 375 (383)
T ss_dssp ---TT--CTTCCCCEEEEETTTC-------------CEEEEEC-BTTBCSCCCEEEECTTS-------SEEEEEE-TTEE
T ss_pred ---cc--ccCCCCeEEEEecCCC-------------ceeeeec-CCCCCceEEEEEEecCc-------cEEEEec-CCcE
Confidence 34 7778999999999876 5555543 12356778888999999 8999997 9999
Q ss_pred EEeEec
Q 037555 292 RVFQVN 297 (298)
Q Consensus 292 ~iw~~~ 297 (298)
++||++
T Consensus 376 ~iw~~~ 381 (383)
T 3ei3_B 376 LIWNRE 381 (383)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999985
No 62
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.8e-33 Score=235.83 Aligned_cols=254 Identities=19% Similarity=0.316 Sum_probs=199.1
Q ss_pred ccccCCCCCceeeeccCCCccccccc------CCC---------------CceEEeccCCCceEEEEEcCCCC-EEEeEe
Q 037555 18 DTLESVPDAVPAVFTEPPIEDQLAWH------TLW---------------PESHKLYGHGNELFSLCCDHQGK-LVASSC 75 (298)
Q Consensus 18 ~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~---------------~~~~~~~~h~~~v~~~~~s~~~~-~l~~~~ 75 (298)
.....|.+.|..+.+.|.....++++ .+| .....+.+|...|++++|+|++. +|++++
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 55678999999999996545555554 223 34677889999999999999998 999994
Q ss_pred ccCCCCceEEEEEEcCCcee-------eeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEE
Q 037555 76 KAQSTAAAEIWLWEVGSWKA-------MGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR 147 (298)
Q Consensus 76 ~~~~~~d~~i~vw~~~~~~~-------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 147 (298)
.||.|++|++.++.. ...+.+|...|.+++|+| ++.+|++++.||.|++||++.... ......
T Consensus 202 -----~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~----~~~~~~ 272 (430)
T 2xyi_A 202 -----DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNT----SKPSHT 272 (430)
T ss_dssp -----TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCS----SSCSEE
T ss_pred -----CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCC----CcceeE
Confidence 599999999987322 345668999999999999 678999999999999999987432 134556
Q ss_pred eeccCCceEEEEEccCCC-EEEEeeCCCeEEEEEccCC-cceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCc
Q 037555 148 QEAHKRIIWSCSWNPFGH-EFATGSRDKTVKIWAVENK-SSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGV 225 (298)
Q Consensus 148 ~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~ 225 (298)
+..|...|++++|+|++. +|++|+.||.|++||++.. ..+. .+..|...|.+++|+|++. .+|++++.|+.
T Consensus 273 ~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~---~~~~h~~~v~~i~~sp~~~----~~l~s~~~d~~ 345 (430)
T 2xyi_A 273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH---SFESHKDEIFQVQWSPHNE----TILASSGTDRR 345 (430)
T ss_dssp EECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE---EEECCSSCEEEEEECSSCT----TEEEEEETTSC
T ss_pred eecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeE---EeecCCCCEEEEEECCCCC----CEEEEEeCCCc
Confidence 678999999999999886 7899999999999999974 3344 5556889999999999884 57999999999
Q ss_pred EEEEEeeecccccccC-CCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcce-EEEeeeCCCcEEEeEec
Q 037555 226 IELWSISVNRTNDVST-PAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTM-QLASCGADNTVRVFQVN 297 (298)
Q Consensus 226 i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iw~~~ 297 (298)
|++||+.......... ... .....+..+.+|...|.+++|+|++ . +|++++.||.|++|+++
T Consensus 346 i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~h~~~v~~~~~~p~~-------~~~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAED---GPPELLFIHGGHTAKISDFSWNPNE-------PWIICSVSEDNIMQVWQMA 409 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHH---CCTTEEEECCCCSSCEEEEEECSSS-------TTEEEEEETTSEEEEEEEC
T ss_pred EEEEeCCCCccccCcccccc---CCcceEEEcCCCCCCceEEEECCCC-------CCEEEEEECCCCEEEeEcc
Confidence 9999998732111000 000 0011222256799999999999998 5 99999999999999974
No 63
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-34 Score=236.91 Aligned_cols=252 Identities=13% Similarity=0.221 Sum_probs=205.7
Q ss_pred ccccceeeeecCcc--cccccCCCCCceeeeccCCCccccccc------CCC---------CceEEeccCCCceEEEEEc
Q 037555 3 AATRETVERHGNDG--LDTLESVPDAVPAVFTEPPIEDQLAWH------TLW---------PESHKLYGHGNELFSLCCD 65 (298)
Q Consensus 3 ~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~---------~~~~~~~~h~~~v~~~~~s 65 (298)
++.++.++..+++. ......|...|.++.|. |.+..++++ .+| ..+..+.+|...|++++|+
T Consensus 44 d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 122 (416)
T 2pm9_A 44 DSSLELWSLLAADSEKPIASLQVDSKFNDLDWS-HNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFN 122 (416)
T ss_dssp CCCCEEEESSSGGGCSCSCCCCCSSCEEEEEEC-SSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEEC
T ss_pred CCeEEEEEccCCCCCcEEEEEecCCceEEEEEC-CCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEc
Confidence 44678888887763 22233688899999998 556666554 234 2567788999999999999
Q ss_pred CC-CCEEEeEeccCCCCceEEEEEEcCCce------eee---ccccccccEEEEEEcCC-CCEEEEEeCCCeEEEEEecc
Q 037555 66 HQ-GKLVASSCKAQSTAAAEIWLWEVGSWK------AMG---RLQSHSLTVTQIRFSHD-DNLLLSVSRDRQFSVFAIQR 134 (298)
Q Consensus 66 ~~-~~~l~~~~~~~~~~d~~i~vw~~~~~~------~~~---~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~ 134 (298)
|+ +.+|++++ .|+.|++||+.+++ ... .+..|...|.+++|+|+ +.+|++++.||.|++||++.
T Consensus 123 ~~~~~~l~s~~-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 197 (416)
T 2pm9_A 123 AKQDNVLASGG-----NNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA 197 (416)
T ss_dssp SSSTTBEEEEC-----SSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT
T ss_pred CCCCCEEEEEc-----CCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC
Confidence 98 89999994 58999999998876 322 24679999999999998 78999999999999999987
Q ss_pred CCCCccceeeeEEeecc------CCceEEEEEccCC-CEEEEeeCCC---eEEEEEccCC-cceeeeeecC-CCCCceEE
Q 037555 135 TGTGEIDYQLIARQEAH------KRIIWSCSWNPFG-HEFATGSRDK---TVKIWAVENK-SSVKQILALP-PFNSSVTA 202 (298)
Q Consensus 135 ~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~~~dg---~i~~wd~~~~-~~~~~~~~~~-~~~~~v~~ 202 (298)
...+..+..+ ...|.+++|+|++ .+|++++.|+ .|++||+++. .... .+. +|...|.+
T Consensus 198 -------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~---~~~~~~~~~v~~ 267 (416)
T 2pm9_A 198 -------KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQ---TLNQGHQKGILS 267 (416)
T ss_dssp -------TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSB---CCCSCCSSCEEE
T ss_pred -------CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcE---EeecCccCceeE
Confidence 4555666655 7889999999987 6899999998 9999999986 3444 555 78899999
Q ss_pred EEEee-ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceE
Q 037555 203 LSWVG-LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQ 281 (298)
Q Consensus 203 ~~~~~-~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 281 (298)
++|+| ++ .+|++++.|+.|++||+++. +.+..+ .+|...|.+++|+|+++ .+
T Consensus 268 ~~~s~~~~-----~~l~s~~~dg~v~~wd~~~~-------------~~~~~~---~~~~~~v~~~~~s~~~~------~~ 320 (416)
T 2pm9_A 268 LDWCHQDE-----HLLLSSGRDNTVLLWNPESA-------------EQLSQF---PARGNWCFKTKFAPEAP------DL 320 (416)
T ss_dssp EEECSSCS-----SCEEEEESSSEEEEECSSSC-------------CEEEEE---ECSSSCCCCEEECTTCT------TE
T ss_pred EEeCCCCC-----CeEEEEeCCCCEEEeeCCCC-------------ccceee---cCCCCceEEEEECCCCC------CE
Confidence 99999 66 79999999999999999876 444443 46899999999999873 69
Q ss_pred EEeeeCCCcEEEeEec
Q 037555 282 LASCGADNTVRVFQVN 297 (298)
Q Consensus 282 l~s~~~d~~i~iw~~~ 297 (298)
|++++.|+.|++|+++
T Consensus 321 l~s~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 321 FACASFDNKIEVQTLQ 336 (416)
T ss_dssp EEECCSSSEEEEEESC
T ss_pred EEEEecCCcEEEEEcc
Confidence 9999999999999975
No 64
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=3.6e-34 Score=234.61 Aligned_cols=251 Identities=17% Similarity=0.243 Sum_probs=197.2
Q ss_pred cccCCCCCceeeeccCC---Ccc-ccccc-----CCCC-----ceEEecc-----CCCceEEEEEcCC----CCEEEeEe
Q 037555 19 TLESVPDAVPAVFTEPP---IED-QLAWH-----TLWP-----ESHKLYG-----HGNELFSLCCDHQ----GKLVASSC 75 (298)
Q Consensus 19 ~~~~~~~~v~~~~~~~~---~~~-~~~~~-----~~~~-----~~~~~~~-----h~~~v~~~~~s~~----~~~l~~~~ 75 (298)
...+|...|.++.|.|. ... .++.. .+|+ .+..+.. |...|++++|+|+ +++|++++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 34589999999999963 222 33332 3553 2334432 6678999999998 67899995
Q ss_pred ccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEe---ecc
Q 037555 76 KAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQ---EAH 151 (298)
Q Consensus 76 ~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~ 151 (298)
.|+.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||++. ...+..+ ..|
T Consensus 93 -----~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~ 160 (366)
T 3k26_A 93 -----SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT-------DTLVAIFGGVEGH 160 (366)
T ss_dssp -----TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT-------TEEEEEECSTTSC
T ss_pred -----CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec-------CeEEEEecccccc
Confidence 499999999999999999999999999999999 899999999999999999987 4455555 679
Q ss_pred CCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceee-------------------------eeecCCCCCceEEEEEe
Q 037555 152 KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQ-------------------------ILALPPFNSSVTALSWV 206 (298)
Q Consensus 152 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~-------------------------~~~~~~~~~~v~~~~~~ 206 (298)
...|.+++|+|++++|++++.||.|++||+++.+.... +.....|...|.+++|+
T Consensus 161 ~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (366)
T 3k26_A 161 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL 240 (366)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE
T ss_pred cCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc
Confidence 99999999999999999999999999999997654331 11223388899999998
Q ss_pred eccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecC--CCCCCCcceEEEe
Q 037555 207 GLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTH--EKPKNSRTMQLAS 284 (298)
Q Consensus 207 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~l~s 284 (298)
+ .++++++.|+.|++||+++............ .....+..+..|...|.+++|+|+ + .+|++
T Consensus 241 --~-----~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~-------~~l~~ 304 (366)
T 3k26_A 241 --G-----DLILSKSCENAIVCWKPGKMEDDIDKIKPSE--SNVTILGRFDYSQCDIWYMRFSMDFWQ-------KMLAL 304 (366)
T ss_dssp --T-----TEEEEECSSSEEEEEEESSTTCCGGGCCTTC--CCEEEEEEEECSSCCSSCCCCEECTTS-------SEEEE
T ss_pred --C-----CEEEEEecCCEEEEEeCCCccccccccccCC--cchheeccccccCCcEEEEEEcCCCCC-------cEEEE
Confidence 4 6899999999999999987644222111111 111223335568899999999999 8 89999
Q ss_pred eeCCCcEEEeEec
Q 037555 285 CGADNTVRVFQVN 297 (298)
Q Consensus 285 ~~~d~~i~iw~~~ 297 (298)
++.||.|++||++
T Consensus 305 ~~~dg~i~vwd~~ 317 (366)
T 3k26_A 305 GNQVGKLYVWDLE 317 (366)
T ss_dssp ECTTSCEEEEECC
T ss_pred EecCCcEEEEECC
Confidence 9999999999985
No 65
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.9e-34 Score=239.74 Aligned_cols=261 Identities=14% Similarity=0.204 Sum_probs=196.0
Q ss_pred ecCcccccc-cCCCCCceeeeccCCCccccccc------CCCCce----------EEeccCCCceEEEEEcCCCCEEEeE
Q 037555 12 HGNDGLDTL-ESVPDAVPAVFTEPPIEDQLAWH------TLWPES----------HKLYGHGNELFSLCCDHQGKLVASS 74 (298)
Q Consensus 12 ~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~------~~~~~~----------~~~~~h~~~v~~~~~s~~~~~l~~~ 74 (298)
.+|+.+..+ .+|.+.|.++.+.|..+..++++ ++|+.. ....+|...|++++|+|++++|+++
T Consensus 50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 129 (437)
T 3gre_A 50 LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVS 129 (437)
T ss_dssp CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEE
T ss_pred ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEE
Confidence 567778888 89999999999995367777765 456421 1122699999999999999999999
Q ss_pred eccCCCCceEEEEEEcC---Cceeeecccc------------ccccEEEEE--EcCCCCEEEEEeCCCeEEEEEeccCCC
Q 037555 75 CKAQSTAAAEIWLWEVG---SWKAMGRLQS------------HSLTVTQIR--FSHDDNLLLSVSRDRQFSVFAIQRTGT 137 (298)
Q Consensus 75 ~~~~~~~d~~i~vw~~~---~~~~~~~~~~------------~~~~v~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~ 137 (298)
+. |+.|++||++ +++....+.. +...+.++. +++++++|++++.|+.|++||++.
T Consensus 130 s~-----dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~--- 201 (437)
T 3gre_A 130 SK-----DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRT--- 201 (437)
T ss_dssp ET-----TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTT---
T ss_pred eC-----CCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCC---
Confidence 54 9999999995 4443333222 445566666 557899999999999999999987
Q ss_pred CccceeeeEEeec--cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC-CCCCceEEEEEeeccccCCc
Q 037555 138 GEIDYQLIARQEA--HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP-PFNSSVTALSWVGLDRQKNH 214 (298)
Q Consensus 138 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~ 214 (298)
...+..+.. |...|.+++|+|++++|++++.||.|++||+++++.+. .+. .+...|.+++|+|.- ++++
T Consensus 202 ----~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~-s~~~ 273 (437)
T 3gre_A 202 ----LERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIR---SWSFGDHAPITHVEVCQFY-GKNS 273 (437)
T ss_dssp ----CCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE---EEBCTTCEEEEEEEECTTT-CTTE
T ss_pred ----CeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEE---EEecCCCCceEEEEecccc-CCCc
Confidence 556677776 88999999999999999999999999999999877766 332 467789999887742 2233
Q ss_pred cEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeec---------cCCc--ccceEEEEEeecCCCCCCCcceEEE
Q 037555 215 GFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFD---------PFAC--HVAAVNRMAWKTHEKPKNSRTMQLA 283 (298)
Q Consensus 215 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~--~~~~v~~~~~~~~~~~~~~~~~~l~ 283 (298)
.+|++|+.|+.|++||+++++.............. ..+. .+.+ |...|++++|+ ++ .+|+
T Consensus 274 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-------~~l~ 344 (437)
T 3gre_A 274 VIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSM-EHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-------KILL 344 (437)
T ss_dssp EEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCG-GGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-------EEEE
T ss_pred cEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCcc-ceecccccccccceecccccCCceEEEEEC-Cc-------eEEE
Confidence 79999999999999999876422211110000000 0000 1233 88899999999 66 7999
Q ss_pred eeeCCCcEEEeEec
Q 037555 284 SCGADNTVRVFQVN 297 (298)
Q Consensus 284 s~~~d~~i~iw~~~ 297 (298)
+++.|+.|++||++
T Consensus 345 s~~~d~~i~~wd~~ 358 (437)
T 3gre_A 345 TDEATSSIVMFSLN 358 (437)
T ss_dssp EEGGGTEEEEEETT
T ss_pred ecCCCCeEEEEECC
Confidence 99999999999975
No 66
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-34 Score=240.90 Aligned_cols=270 Identities=11% Similarity=0.171 Sum_probs=211.3
Q ss_pred ccccceeeeec----CcccccccCCCCCceeeeccCCCccccccc------CCCCc--------------eEEeccCCCc
Q 037555 3 AATRETVERHG----NDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWPE--------------SHKLYGHGNE 58 (298)
Q Consensus 3 ~~~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~--------------~~~~~~h~~~ 58 (298)
++.++.++..+ .+.+..+.+|...|.++.+.|..+..++++ .+|+. ...+.+|...
T Consensus 88 dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (416)
T 2pm9_A 88 NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE 167 (416)
T ss_dssp SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred CCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCC
Confidence 34566777666 357888999999999999996546666655 35532 1123579999
Q ss_pred eEEEEEcCC-CCEEEeEeccCCCCceEEEEEEcCCceeeeccccc------cccEEEEEEcCCC-CEEEEEeCCC---eE
Q 037555 59 LFSLCCDHQ-GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSH------SLTVTQIRFSHDD-NLLLSVSRDR---QF 127 (298)
Q Consensus 59 v~~~~~s~~-~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~~~dg---~i 127 (298)
|.+++|+|+ +.+|++++ .|+.|++||+++++.+..+..+ ...|.+++|+|++ .++++++.|+ .|
T Consensus 168 v~~~~~~~~~~~~l~~~~-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i 242 (416)
T 2pm9_A 168 VISLAWNQSLAHVFASAG-----SSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI 242 (416)
T ss_dssp CCEEEECSSCTTEEEEES-----SSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCC
T ss_pred eeEEEeCCCCCcEEEEEc-----CCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceE
Confidence 999999999 78999984 5999999999999888887765 7899999999987 6899999998 99
Q ss_pred EEEEeccCCCCccceeeeEEee-ccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEE
Q 037555 128 SVFAIQRTGTGEIDYQLIARQE-AHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSW 205 (298)
Q Consensus 128 ~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~ 205 (298)
++||++... .....+. .|...|.+++|+| ++++|++++.||.|++||+++++.+. .+..|...|.+++|
T Consensus 243 ~~~d~~~~~------~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~---~~~~~~~~v~~~~~ 313 (416)
T 2pm9_A 243 LIWDLRNAN------TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLS---QFPARGNWCFKTKF 313 (416)
T ss_dssp CEEETTSTT------SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEE---EEECSSSCCCCEEE
T ss_pred EEEeCCCCC------CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccce---eecCCCCceEEEEE
Confidence 999998742 3345556 7999999999999 89999999999999999999988776 56678899999999
Q ss_pred eeccccCCccEEEEeecCCcEEEEEeeecccccccCC-C-CCCcc-----------------eeeeeccCCcccceEEEE
Q 037555 206 VGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTP-A-PSTAN-----------------IIIRFDPFACHVAAVNRM 266 (298)
Q Consensus 206 ~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-~-~~~~~-----------------~~~~~~~~~~~~~~v~~~ 266 (298)
+|++. .+|++++.|+.|++|++........... . ..... ....+.....|..++.++
T Consensus 314 s~~~~----~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (416)
T 2pm9_A 314 APEAP----DLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAA 389 (416)
T ss_dssp CTTCT----TEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCC
T ss_pred CCCCC----CEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccce
Confidence 99874 6999999999999999987654322110 0 00000 000001122367788899
Q ss_pred EeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 267 AWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 267 ~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+|+|++ .+|++++.|+.|+||++.
T Consensus 390 ~~s~dg-------~~la~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 390 HWAFGG-------KLVQITPDGKGVSITNPK 413 (416)
T ss_dssp EEETTT-------EEECBCTTSSCBCCBCCC
T ss_pred EEeeCC-------eEEEEeCCCCeEEEEEec
Confidence 999999 899999999999999985
No 67
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3.5e-33 Score=230.61 Aligned_cols=214 Identities=15% Similarity=0.195 Sum_probs=177.6
Q ss_pred CCceEEeccCCCceEEEEEcCCC-CEEEeEeccCCCCceEEEEEEcCCceeeeccc--cccccEEEEEEcC-CCCEEEEE
Q 037555 46 WPESHKLYGHGNELFSLCCDHQG-KLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ--SHSLTVTQIRFSH-DDNLLLSV 121 (298)
Q Consensus 46 ~~~~~~~~~h~~~v~~~~~s~~~-~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~--~~~~~v~~~~~~~-~~~~l~~~ 121 (298)
......+.+|...|++++|+|++ ++|++++. |+.|++||+.+++....+. +|...|.+++|+| ++++|+++
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 137 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSK-----GGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS 137 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEB-----TSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcC-----CCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEE
Confidence 34577889999999999999999 89999954 8999999999887766554 6999999999999 77999999
Q ss_pred eCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceE
Q 037555 122 SRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVT 201 (298)
Q Consensus 122 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~ 201 (298)
+.|+.|++||+.... .........|...|.+++|+|++++|++++.|+.|++||++ ++... .+..|...|.
T Consensus 138 ~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~---~~~~h~~~v~ 208 (383)
T 3ei3_B 138 SIRGATTLRDFSGSV-----IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIF---KEKLHKAKVT 208 (383)
T ss_dssp ETTTEEEEEETTSCE-----EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEE---EEECSSSCEE
T ss_pred eCCCEEEEEECCCCc-----eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEE---EeccCCCcEE
Confidence 999999999998421 22222223445889999999999999999999999999995 44444 5667899999
Q ss_pred EEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeec-CCCCCCCcce
Q 037555 202 ALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKT-HEKPKNSRTM 280 (298)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~ 280 (298)
+++|+|++. .++++++.|+.|++||+++..... .....+ +|...|.+++|+| ++ .
T Consensus 209 ~~~~~~~~~----~~l~s~~~d~~i~iwd~~~~~~~~---------~~~~~~----~~~~~v~~~~~s~~~~-------~ 264 (383)
T 3ei3_B 209 HAEFNPRCD----WLMATSSVDATVKLWDLRNIKDKN---------SYIAEM----PHEKPVNAAYFNPTDS-------T 264 (383)
T ss_dssp EEEECSSCT----TEEEEEETTSEEEEEEGGGCCSTT---------CEEEEE----ECSSCEEEEEECTTTS-------C
T ss_pred EEEECCCCC----CEEEEEeCCCEEEEEeCCCCCccc---------ceEEEe----cCCCceEEEEEcCCCC-------C
Confidence 999999982 399999999999999998743211 333333 4889999999999 88 8
Q ss_pred EEEeeeCCCcEEEeEec
Q 037555 281 QLASCGADNTVRVFQVN 297 (298)
Q Consensus 281 ~l~s~~~d~~i~iw~~~ 297 (298)
+|++++.|+.|++||++
T Consensus 265 ~l~~~~~d~~i~iwd~~ 281 (383)
T 3ei3_B 265 KLLTTDQRNEIRVYSSY 281 (383)
T ss_dssp EEEEEESSSEEEEEETT
T ss_pred EEEEEcCCCcEEEEECC
Confidence 99999999999999974
No 68
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.8e-33 Score=253.45 Aligned_cols=240 Identities=15% Similarity=0.239 Sum_probs=207.5
Q ss_pred ccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceE
Q 037555 16 GLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAE 84 (298)
Q Consensus 16 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~ 84 (298)
....+.+|.+.|.++.++ |.+..++.+ .+|+ .+..+.+|..+|++++|+|++++|++++ .|+.
T Consensus 5 ~~~~~~~h~~~v~~i~~s-p~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~dg~ 78 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFH-PTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGS-----DDFR 78 (814)
T ss_dssp CEEEEEEECSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEE-----TTSE
T ss_pred cceeeecCCCceEEEEEC-CCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEe-----CCCe
Confidence 356778999999999999 566666665 3564 4678889999999999999999999995 4899
Q ss_pred EEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc-C
Q 037555 85 IWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-F 163 (298)
Q Consensus 85 i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 163 (298)
|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||+... ......+..|...|.+++|+| +
T Consensus 79 i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~------~~~~~~~~~~~~~v~~~~~~p~~ 152 (814)
T 3mkq_A 79 IRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN------WALEQTFEGHEHFVMCVAFNPKD 152 (814)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT------SEEEEEEECCSSCEEEEEEETTE
T ss_pred EEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC------ceEEEEEcCCCCcEEEEEEEcCC
Confidence 999999999999999999999999999999999999999999999999863 355677788999999999999 8
Q ss_pred CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEee--ccccCCccEEEEeecCCcEEEEEeeecccccccC
Q 037555 164 GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG--LDRQKNHGFLAVGMESGVIELWSISVNRTNDVST 241 (298)
Q Consensus 164 ~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 241 (298)
++.|++++.||.|++||+++......+. ..+...+.+++|+| ++ .++++++.||.|++||+.++
T Consensus 153 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~-----~~l~~~~~dg~i~~~d~~~~------- 218 (814)
T 3mkq_A 153 PSTFASGCLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDK-----PYMITASDDLTIKIWDYQTK------- 218 (814)
T ss_dssp EEEEEEEETTSEEEEEETTCSSCSEEEE--CCCTTCCCEEEECCSTTC-----CEEEEECTTSEEEEEETTTT-------
T ss_pred CCEEEEEeCCCeEEEEECCCCcceeEEe--cCCCCCEEEEEEEECCCC-----CEEEEEeCCCEEEEEECCCC-------
Confidence 8999999999999999998877665332 23448899999999 66 79999999999999999876
Q ss_pred CCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 242 PAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.....+ .+|...|.+++|+|++ .+|++++.||.|++||+.
T Consensus 219 ------~~~~~~---~~~~~~v~~~~~~~~~-------~~l~~~~~dg~v~vwd~~ 258 (814)
T 3mkq_A 219 ------SCVATL---EGHMSNVSFAVFHPTL-------PIIISGSEDGTLKIWNSS 258 (814)
T ss_dssp ------EEEEEE---ECCSSCEEEEEECSSS-------SEEEEEETTSCEEEEETT
T ss_pred ------cEEEEE---cCCCCCEEEEEEcCCC-------CEEEEEeCCCeEEEEECC
Confidence 444443 4688999999999999 899999999999999974
No 69
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=228.90 Aligned_cols=265 Identities=17% Similarity=0.156 Sum_probs=209.9
Q ss_pred ccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCCc-----eEEe-------------ccCCCceE
Q 037555 5 TRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWPE-----SHKL-------------YGHGNELF 60 (298)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~-----~~~~-------------~~h~~~v~ 60 (298)
.++.++...++....+.+|.+.|.++.+.|..+..++++ .+|+. ...+ .+|...|.
T Consensus 24 ~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 103 (408)
T 4a11_B 24 TRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVE 103 (408)
T ss_dssp HHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEE
T ss_pred cceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEE
Confidence 345667788888999999999999999996367777665 34531 1111 25999999
Q ss_pred EEEEcC-CCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCC---CCEEEEEeCCCeEEEEEeccCC
Q 037555 61 SLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHD---DNLLLSVSRDRQFSVFAIQRTG 136 (298)
Q Consensus 61 ~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~ 136 (298)
+++|+| ++.+|++++ .|+.|++||+.+++....+. +...+.++.|+|. +.++++++.|+.|++||+..
T Consensus 104 ~~~~~~~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-- 175 (408)
T 4a11_B 104 TVQWYPHDTGMFTSSS-----FDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS-- 175 (408)
T ss_dssp EEEECTTCTTCEEEEE-----TTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS--
T ss_pred EEEEccCCCcEEEEEe-----CCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC--
Confidence 999999 778999995 48999999999998887776 7888999999984 45999999999999999987
Q ss_pred CCccceeeeEEeeccCCceEEEEEccCCC-EEEEeeCCCeEEEEEccCCcceeee-------------eecCCCCCceEE
Q 037555 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGH-EFATGSRDKTVKIWAVENKSSVKQI-------------LALPPFNSSVTA 202 (298)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~-------------~~~~~~~~~v~~ 202 (298)
...+..+..|...|.+++|+|++. .|++++.||.|++||++........ .....|...|.+
T Consensus 176 -----~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 250 (408)
T 4a11_B 176 -----GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNG 250 (408)
T ss_dssp -----SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEE
T ss_pred -----cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeE
Confidence 455677788999999999999988 5899999999999999876522111 012467889999
Q ss_pred EEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCC----------------------------------CCcc
Q 037555 203 LSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAP----------------------------------STAN 248 (298)
Q Consensus 203 ~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~----------------------------------~~~~ 248 (298)
++|+|++ .+|++++.|+.|++||+++++......... ....
T Consensus 251 ~~~~~~~-----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 325 (408)
T 4a11_B 251 LCFTSDG-----LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGE 325 (408)
T ss_dssp EEECTTS-----SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCC
T ss_pred EEEcCCC-----CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCc
Confidence 9999998 799999999999999998765432211100 0111
Q ss_pred eeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 249 IIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 249 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
. +..+.+|...|++++|+|++ .+|++++.||.|++||++
T Consensus 326 ~---~~~~~~~~~~v~~~~~s~~~-------~~l~s~~~dg~i~iw~~~ 364 (408)
T 4a11_B 326 Q---ITMLKGHYKTVDCCVFQSNF-------QELYSGSRDCNILAWVPS 364 (408)
T ss_dssp E---EEEECCCSSCEEEEEEETTT-------TEEEEEETTSCEEEEEEC
T ss_pred c---eeeeccCCCeEEEEEEcCCC-------CEEEEECCCCeEEEEeCC
Confidence 1 22245799999999999999 899999999999999985
No 70
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-34 Score=244.65 Aligned_cols=205 Identities=9% Similarity=0.037 Sum_probs=169.2
Q ss_pred EEeccCCCceEEEEEcCC------CCEEEeEeccCCCCceEEEEEEcCCcee-----------eeccccccccEEEEEEc
Q 037555 50 HKLYGHGNELFSLCCDHQ------GKLVASSCKAQSTAAAEIWLWEVGSWKA-----------MGRLQSHSLTVTQIRFS 112 (298)
Q Consensus 50 ~~~~~h~~~v~~~~~s~~------~~~l~~~~~~~~~~d~~i~vw~~~~~~~-----------~~~~~~~~~~v~~~~~~ 112 (298)
..+.+|.+.|.+++|+|+ +.+||+++ .|++|++||+.+++. ...+.+|...|++++|+
T Consensus 201 ~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s-----~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s 275 (524)
T 2j04_B 201 QTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVS-----QEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFL 275 (524)
T ss_dssp EEEEECCCSEEEEEECSSCCCSSSSCEEEEEE-----TTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEES
T ss_pred EEEEecCCcEEEEEECCCCCCCCCCceEEEEe-----cCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEec
Confidence 346678899999999996 57999995 499999999976532 23567899999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEE--EEccCC-CEEEEeeCCCeEEEEEccCCcceee
Q 037555 113 HDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC--SWNPFG-HEFATGSRDKTVKIWAVENKSSVKQ 189 (298)
Q Consensus 113 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~ 189 (298)
++ ..|++|+.||+|++||++... .+...+..|...|.++ .|+|++ ++|++++.|++|++||+++.+....
T Consensus 276 ~~-~~lasgs~DgtV~lWD~~~~~------~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~ 348 (524)
T 2j04_B 276 SP-TTVVCGFKNGFVAEFDLTDPE------VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKT 348 (524)
T ss_dssp SS-SEEEEEETTSEEEEEETTBCS------SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCE
T ss_pred CC-CeEEEEeCCCEEEEEECCCCC------CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccc
Confidence 86 489999999999999998632 2344577899999999 578887 8999999999999999998776653
Q ss_pred eeecCCCC--CceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEE
Q 037555 190 ILALPPFN--SSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMA 267 (298)
Q Consensus 190 ~~~~~~~~--~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 267 (298)
+.+|. ..|.+++|+|++ ..+++++.|+.|++||++.. .+... +.+|...|++|+
T Consensus 349 ---~~~~~~~~~v~~v~fsp~~-----~~l~s~~~d~tv~lwd~~~~-------------~~~~~---l~gH~~~V~sva 404 (524)
T 2j04_B 349 ---TVSRFRGSNLVPVVYCPQI-----YSYIYSDGASSLRAVPSRAA-------------FAVHP---LVSRETTITAIG 404 (524)
T ss_dssp ---EEEECSCCSCCCEEEETTT-----TEEEEECSSSEEEEEETTCT-------------TCCEE---EEECSSCEEEEE
T ss_pred ---cccccccCcccceEeCCCc-----CeEEEeCCCCcEEEEECccc-------------cccee---eecCCCceEEEE
Confidence 22333 357899999988 68999999999999999876 44333 336999999999
Q ss_pred eecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 268 WKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 268 ~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
|+|++ .+|++|+.|++|++||+.
T Consensus 405 ~Sp~g-------~~l~Sgs~Dgtv~lwd~~ 427 (524)
T 2j04_B 405 VSRLH-------PMVLAGSADGSLIITNAA 427 (524)
T ss_dssp CCSSC-------CBCEEEETTTEEECCBSC
T ss_pred eCCCC-------CeEEEEECCCEEEEEech
Confidence 99999 899999999999999863
No 71
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.3e-32 Score=223.39 Aligned_cols=210 Identities=18% Similarity=0.275 Sum_probs=179.2
Q ss_pred ceEEeccCCCceEEEEEcCC-CCEEEeEeccCCCCceEEEEEEcCCce-----eeeccccccccEEEEEEcCCCCEEEEE
Q 037555 48 ESHKLYGHGNELFSLCCDHQ-GKLVASSCKAQSTAAAEIWLWEVGSWK-----AMGRLQSHSLTVTQIRFSHDDNLLLSV 121 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~-~~~l~~~~~~~~~~d~~i~vw~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~ 121 (298)
...+|+||.+.|++++|+|+ +++|++|+. |++|+|||+.+.+ +...+.+|...|.+++|+|++++|+++
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~-----D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~ 104 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASR-----DKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSG 104 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEET-----TSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcC-----CCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEE
Confidence 35678999999999999997 689999964 9999999987543 456678999999999999999999999
Q ss_pred eCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceE
Q 037555 122 SRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVT 201 (298)
Q Consensus 122 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~ 201 (298)
+.|+.|++|+... .........+...+..+.+++++++|++++.|+.+++||+....... .....|...+.
T Consensus 105 ~~d~~i~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~--~~~~~~~~~v~ 175 (340)
T 4aow_A 105 SWDGTLRLWDLTT-------GTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYT--VQDESHSEWVS 175 (340)
T ss_dssp ETTSEEEEEETTT-------TEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE--ECSSSCSSCEE
T ss_pred cccccceEEeecc-------cceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEE--EEeccccCccc
Confidence 9999999999887 45566667778889999999999999999999999999987654432 24567889999
Q ss_pred EEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceE
Q 037555 202 ALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQ 281 (298)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 281 (298)
.++|++++. ..++++++.|+.|++||+++. ..... +.+|...|++++|+|++ .+
T Consensus 176 ~~~~~~~~~---~~~~~s~~~d~~i~i~d~~~~-------------~~~~~---~~~h~~~v~~~~~s~~~-------~~ 229 (340)
T 4aow_A 176 CVRFSPNSS---NPIIVSCGWDKLVKVWNLANC-------------KLKTN---HIGHTGYLNTVTVSPDG-------SL 229 (340)
T ss_dssp EEEECSCSS---SCEEEEEETTSCEEEEETTTT-------------EEEEE---ECCCSSCEEEEEECTTS-------SE
T ss_pred ceEEccCCC---CcEEEEEcCCCEEEEEECCCC-------------ceeeE---ecCCCCcEEEEEECCCC-------CE
Confidence 999998752 257889999999999999876 44444 44699999999999999 89
Q ss_pred EEeeeCCCcEEEeEec
Q 037555 282 LASCGADNTVRVFQVN 297 (298)
Q Consensus 282 l~s~~~d~~i~iw~~~ 297 (298)
|++++.|+.|++||++
T Consensus 230 l~s~s~Dg~i~iwd~~ 245 (340)
T 4aow_A 230 CASGGKDGQAMLWDLN 245 (340)
T ss_dssp EEEEETTCEEEEEETT
T ss_pred EEEEeCCCeEEEEEec
Confidence 9999999999999975
No 72
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.8e-33 Score=232.12 Aligned_cols=245 Identities=14% Similarity=0.170 Sum_probs=195.6
Q ss_pred cccccCCCCCceeeeccCCCccccccc------CCCC-----------ceEEeccCCCceEEEEEcCC----C---CEEE
Q 037555 17 LDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----------ESHKLYGHGNELFSLCCDHQ----G---KLVA 72 (298)
Q Consensus 17 ~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----------~~~~~~~h~~~v~~~~~s~~----~---~~l~ 72 (298)
...+.+|.+.|.++.+.| ..++++ .+|+ ....+.+|..+|++++|+|+ + ++|+
T Consensus 9 ~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~ 85 (397)
T 1sq9_A 9 ANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA 85 (397)
T ss_dssp EEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred hhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEE
Confidence 456789999999999985 455544 3442 47888899999999999999 9 9999
Q ss_pred eEeccCCCCceEEEEEEcCCcee-----eeccccc-----cccEEEEEEc----CCCCE-EEEEeCCCeEEEEEecc---
Q 037555 73 SSCKAQSTAAAEIWLWEVGSWKA-----MGRLQSH-----SLTVTQIRFS----HDDNL-LLSVSRDRQFSVFAIQR--- 134 (298)
Q Consensus 73 ~~~~~~~~~d~~i~vw~~~~~~~-----~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~dg~i~iwd~~~--- 134 (298)
+++. |+.|++|++.+++. +..+..| ...|.+++|+ |++++ |++++.||.|++||+..
T Consensus 86 s~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 86 TTSF-----SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEET-----TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred EEcC-----CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 9954 89999999988876 7778878 5899999999 99999 99999999999999987
Q ss_pred ---CCCCccceeeeEEe-------eccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCC---CCceE
Q 037555 135 ---TGTGEIDYQLIARQ-------EAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPF---NSSVT 201 (298)
Q Consensus 135 ---~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~---~~~v~ 201 (298)
..... ......+ ..|...|.+++|+|++ +|++++.||.|++||+++.+.+..+.....| ...|.
T Consensus 161 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~ 237 (397)
T 1sq9_A 161 ESNSLTLN--WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR 237 (397)
T ss_dssp HHHHTTTC--CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEE
T ss_pred ccccceee--ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccc
Confidence 32211 1111133 4478899999999999 9999999999999999988777633221227 88999
Q ss_pred EEEEeeccccCCccEEEEeecC---CcEEEEEeeecccccccCCCCCCcceeeeecc----------CCcccceEEEEEe
Q 037555 202 ALSWVGLDRQKNHGFLAVGMES---GVIELWSISVNRTNDVSTPAPSTANIIIRFDP----------FACHVAAVNRMAW 268 (298)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~v~~~~~ 268 (298)
+++|+|++ .+|++++.| +.|++||+++. ..+..+.. ...|...|.+++|
T Consensus 238 ~i~~~~~~-----~~l~~~~~d~~~g~i~i~d~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 299 (397)
T 1sq9_A 238 SVKFSPQG-----SLLAIAHDSNSFGCITLYETEFG-------------ERIGSLSVPTHSSQASLGEFAHSSWVMSLSF 299 (397)
T ss_dssp EEEECSST-----TEEEEEEEETTEEEEEEEETTTC-------------CEEEEECBC--------CCBSBSSCEEEEEE
T ss_pred eEEECCCC-----CEEEEEecCCCCceEEEEECCCC-------------cccceeccCcccccccccccccCCcEEEEEE
Confidence 99999998 799999999 99999999876 33333321 0118899999999
Q ss_pred ecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 269 KTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 269 ~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+|++ .+|++++.|+.|++||++
T Consensus 300 ~~~~-------~~l~~~~~dg~i~iwd~~ 321 (397)
T 1sq9_A 300 NDSG-------ETLCSAGWDGKLRFWDVK 321 (397)
T ss_dssp CSSS-------SEEEEEETTSEEEEEETT
T ss_pred CCCC-------CEEEEEeCCCeEEEEEcC
Confidence 9999 899999999999999975
No 73
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=5e-33 Score=231.16 Aligned_cols=255 Identities=15% Similarity=0.220 Sum_probs=202.5
Q ss_pred ccccceeeeecC----cccccccCCCCCceeeeccCCCccccccc------CCCC------------ceEEeccCCCceE
Q 037555 3 AATRETVERHGN----DGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP------------ESHKLYGHGNELF 60 (298)
Q Consensus 3 ~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~------------~~~~~~~h~~~v~ 60 (298)
++.++.++.... ..+..+.+|.+.|.++.+.|..+..++++ .+|+ .+..+.+|...|.
T Consensus 56 ~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~ 135 (402)
T 2aq5_A 56 GGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135 (402)
T ss_dssp SCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEE
T ss_pred CCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEE
Confidence 345556664332 35667889999999999996466666665 3442 3678889999999
Q ss_pred EEEEcCCC-CEEEeEeccCCCCceEEEEEEcCCceeeecc--ccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCC
Q 037555 61 SLCCDHQG-KLVASSCKAQSTAAAEIWLWEVGSWKAMGRL--QSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGT 137 (298)
Q Consensus 61 ~~~~s~~~-~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 137 (298)
+++|+|++ .+|++++ .|+.|++||+.+++.+..+ ..|...|.+++|+|++++|++++.||.|++||++.
T Consensus 136 ~~~~~p~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--- 207 (402)
T 2aq5_A 136 IVAWHPTAQNVLLSAG-----CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK--- 207 (402)
T ss_dssp EEEECSSBTTEEEEEE-----TTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTT---
T ss_pred EEEECcCCCCEEEEEc-----CCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCC---
Confidence 99999998 6999995 4899999999999998888 78999999999999999999999999999999987
Q ss_pred CccceeeeEEe-eccCCc-eEEEEEccCCCEEEEe---eCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccC
Q 037555 138 GEIDYQLIARQ-EAHKRI-IWSCSWNPFGHEFATG---SRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQK 212 (298)
Q Consensus 138 ~~~~~~~~~~~-~~~~~~-v~~~~~~~~~~~l~~~---~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 212 (298)
...+..+ ..|... +..+.|+|++.+|++| +.|+.|++||+++.........+ .+...+.+++|+|++
T Consensus 208 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~--- 279 (402)
T 2aq5_A 208 ----GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DTSSGVLLPFFDPDT--- 279 (402)
T ss_dssp ----TEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CCCSSCEEEEEETTT---
T ss_pred ----CceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cCCCceeEEEEcCCC---
Confidence 4556666 577765 8999999999999999 78999999999987653333233 366789999999998
Q ss_pred CccEEE-EeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcE
Q 037555 213 NHGFLA-VGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTV 291 (298)
Q Consensus 213 ~~~~l~-~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i 291 (298)
.+|+ +|+.|+.|++||+.+.. ..+..+..+. |...|.+++|+|++ .++++ .++.+
T Consensus 280 --~~l~~~g~~dg~i~i~d~~~~~------------~~~~~l~~~~-~~~~v~~~~~sp~~-------~~~~s--~~~~~ 335 (402)
T 2aq5_A 280 --NIVYLCGKGDSSIRYFEITSEA------------PFLHYLSMFS-SKESQRGMGYMPKR-------GLEVN--KCEIA 335 (402)
T ss_dssp --TEEEEEETTCSCEEEEEECSST------------TCEEEEEEEC-CSSCCSEEEECCGG-------GSCGG--GTEEE
T ss_pred --CEEEEEEcCCCeEEEEEecCCC------------cceEeecccc-cCCcccceEEeccc-------cccee--cceeE
Confidence 5665 56689999999998763 1133333222 67899999999998 66654 46699
Q ss_pred EEeEec
Q 037555 292 RVFQVN 297 (298)
Q Consensus 292 ~iw~~~ 297 (298)
++|++.
T Consensus 336 ~~~~l~ 341 (402)
T 2aq5_A 336 RFYKLH 341 (402)
T ss_dssp EEEEEE
T ss_pred EEEEcC
Confidence 999974
No 74
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=4.4e-33 Score=232.64 Aligned_cols=234 Identities=13% Similarity=0.126 Sum_probs=186.1
Q ss_pred eeeeccCCCccccccc------CCCCc-----eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceee
Q 037555 28 PAVFTEPPIEDQLAWH------TLWPE-----SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAM 96 (298)
Q Consensus 28 ~~~~~~~~~~~~~~~~------~~~~~-----~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~ 96 (298)
..+.|+ |.+..++++ .+|+. ...+..| ..+....|++++++|++++. |+.|++||+.+++..
T Consensus 60 ~~~~~s-~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~ 132 (420)
T 3vl1_A 60 KGNTFE-KVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTT-----EGDIKVLDSNFNLQR 132 (420)
T ss_dssp TTCEEE-EEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEET-----TSCEEEECTTSCEEE
T ss_pred cceeee-ecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEEC-----CCCEEEEeCCCccee
Confidence 456676 456666555 24432 1222333 44555578999999999954 899999999999988
Q ss_pred eccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeE
Q 037555 97 GRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTV 176 (298)
Q Consensus 97 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 176 (298)
..+.+|...|.+++|+|++++|++++.|+.|++||+.. ...+..+..|...|.+++|+|++++|++++.|+.|
T Consensus 133 ~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v 205 (420)
T 3vl1_A 133 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKD-------GSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTI 205 (420)
T ss_dssp EETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-------CCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred eecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCC-------CcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcE
Confidence 88889999999999999999999999999999999987 45567778899999999999999999999999999
Q ss_pred EEEEccCCcceeeeeecCCCCCceEEEEEeeccc----------------cCCccEEEEeecCCcEEEEEeeeccccccc
Q 037555 177 KIWAVENKSSVKQILALPPFNSSVTALSWVGLDR----------------QKNHGFLAVGMESGVIELWSISVNRTNDVS 240 (298)
Q Consensus 177 ~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~ 240 (298)
++||+++++....+.....+...+.+++|.|... ++++.+|++|+.||.|++||+++.
T Consensus 206 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~------ 279 (420)
T 3vl1_A 206 RLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK------ 279 (420)
T ss_dssp EEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC------
T ss_pred EEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC------
Confidence 9999999887775443334556666666644321 123389999999999999999876
Q ss_pred CCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcce-EEEeeeCCCcEEEeEec
Q 037555 241 TPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTM-QLASCGADNTVRVFQVN 297 (298)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iw~~~ 297 (298)
.....+ ...|...|.+++|+|++ . +|++++.||.|++||++
T Consensus 280 -------~~~~~~--~~~~~~~v~~~~~~~~~-------~~~l~~g~~dg~i~vwd~~ 321 (420)
T 3vl1_A 280 -------EQTIQL--PSKFTCSCNSLTVDGNN-------ANYIYAGYENGMLAQWDLR 321 (420)
T ss_dssp -------CEEEEE--CCTTSSCEEEEEECSSC-------TTEEEEEETTSEEEEEETT
T ss_pred -------ceeEEc--ccccCCCceeEEEeCCC-------CCEEEEEeCCCeEEEEEcC
Confidence 444443 33688999999999998 6 99999999999999975
No 75
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.7e-33 Score=228.75 Aligned_cols=242 Identities=10% Similarity=0.138 Sum_probs=191.6
Q ss_pred ccccCCCCCceeeeccCCCccccccc---------CCCCc-----e-EEeccCCCceEEEEEcCC---CCEEEeEeccCC
Q 037555 18 DTLESVPDAVPAVFTEPPIEDQLAWH---------TLWPE-----S-HKLYGHGNELFSLCCDHQ---GKLVASSCKAQS 79 (298)
Q Consensus 18 ~~~~~~~~~v~~~~~~~~~~~~~~~~---------~~~~~-----~-~~~~~h~~~v~~~~~s~~---~~~l~~~~~~~~ 79 (298)
..+.+|.+.|.++.|.|.....++.+ .+|+. . ....+|..+|++++|+|+ +.+|++++
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~---- 87 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGD---- 87 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEE----
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEec----
Confidence 34477999999999996554555443 34531 1 223479999999999998 69999995
Q ss_pred CCceEEEEEEcCCce-eeeccccccccEEEEE------EcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccC
Q 037555 80 TAAAEIWLWEVGSWK-AMGRLQSHSLTVTQIR------FSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHK 152 (298)
Q Consensus 80 ~~d~~i~vw~~~~~~-~~~~~~~~~~~v~~~~------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 152 (298)
.|+.|++||+.+++ .+..+.+|...|.++. |+|++++|++++.||.|++||+.... .....+..|.
T Consensus 88 -~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~------~~~~~~~~~~ 160 (357)
T 3i2n_A 88 -FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD------DPVANMEPVQ 160 (357)
T ss_dssp -TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS------SCSEEECCCT
T ss_pred -CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC------CcceeccccC
Confidence 48999999999887 7888899999999995 46789999999999999999998743 1344444443
Q ss_pred C----ceEEEE----EccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEee---ccccCCccEEEEee
Q 037555 153 R----IIWSCS----WNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG---LDRQKNHGFLAVGM 221 (298)
Q Consensus 153 ~----~v~~~~----~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~l~~g~ 221 (298)
. .+.+++ |+|++++|++++.||.|++||+++.+... ...+...|.+++|+| ++ .++++++
T Consensus 161 ~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~~~v~~~~~~~~~~~~-----~~l~~~~ 231 (357)
T 3i2n_A 161 GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW----ETNIKNGVCSLEFDRKDISM-----NKLVATS 231 (357)
T ss_dssp TSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEESCSSSSC-----CEEEEEE
T ss_pred CCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee----ecCCCCceEEEEcCCCCCCC-----CEEEEEC
Confidence 3 788888 78899999999999999999999887643 234778999999999 66 7999999
Q ss_pred cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcce-EEEeeeCCCcEEEeEec
Q 037555 222 ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTM-QLASCGADNTVRVFQVN 297 (298)
Q Consensus 222 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iw~~~ 297 (298)
.||.|++||+++...... .. +..+.+|...|.+++|+|++ . +|++++.||.|++||++
T Consensus 232 ~dg~i~i~d~~~~~~~~~----------~~-~~~~~~~~~~v~~~~~~~~~-------~~~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 232 LEGKFHVFDMRTQHPTKG----------FA-SVSEKAHKSTVWQVRHLPQN-------RELFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp STTEEEEEEEEEEETTTE----------EE-EEEEECCSSCEEEEEEETTE-------EEEEEEEETTSEEEEEEEE
T ss_pred CCCeEEEEeCcCCCcccc----------ee-eeccCCCcCCEEEEEECCCC-------CcEEEEEeCCCcEEEeecC
Confidence 999999999998643211 11 11234699999999999998 6 89999999999999985
No 76
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-32 Score=218.76 Aligned_cols=242 Identities=16% Similarity=0.181 Sum_probs=204.1
Q ss_pred ccccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCC--------CceEEeccCCCceEEEEEcCCC
Q 037555 3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLW--------PESHKLYGHGNELFSLCCDHQG 68 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~--------~~~~~~~~h~~~v~~~~~s~~~ 68 (298)
++.++.++..+++....+..|...|..+.+.| .+..++.+ .+| .....+.+|...|.+++| ++
T Consensus 38 dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~ 114 (313)
T 3odt_A 38 DGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDS-EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QD 114 (313)
T ss_dssp TSEEEEEEESSSEEEEEEEECSSCEEEEEEET-TTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ET
T ss_pred CCcEEEEECCCCEEEEEeecCCccEEEEEECC-CCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cC
Confidence 56788899999999999999999999999994 55555554 222 236778899999999999 57
Q ss_pred CEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEE
Q 037555 69 KLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR 147 (298)
Q Consensus 69 ~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 147 (298)
.+|++++ .|+.|++|| .++....+..|...+.++.|.| +++++++++.||.|++||.. .....
T Consensus 115 ~~l~~~~-----~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~---------~~~~~ 178 (313)
T 3odt_A 115 GVVISGS-----WDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND---------KVIKT 178 (313)
T ss_dssp TEEEEEE-----TTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT---------EEEEE
T ss_pred CEEEEEe-----CCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC---------ceEEE
Confidence 7999995 499999999 5677788888999999999998 89999999999999999933 34455
Q ss_pred eec-cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcE
Q 037555 148 QEA-HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVI 226 (298)
Q Consensus 148 ~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i 226 (298)
+.. |...+.+++|+|++. +++++.||.|++||+++++.+. .+..|...|.+++|+|++ .|++++.||.|
T Consensus 179 ~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~i~~~~~~~~~------~l~~~~~dg~v 248 (313)
T 3odt_A 179 FSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLR---TYEGHESFVYCIKLLPNG------DIVSCGEDRTV 248 (313)
T ss_dssp ECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECTTS------CEEEEETTSEE
T ss_pred EeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhh---hhhcCCceEEEEEEecCC------CEEEEecCCEE
Confidence 555 889999999999988 9999999999999999988776 556788999999999987 48899999999
Q ss_pred EEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 227 ELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 227 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
++||++++ +....+ ..|...|.+++|+|++ . +++++.||.|++||++
T Consensus 249 ~iwd~~~~-------------~~~~~~---~~~~~~i~~~~~~~~~-------~-~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 249 RIWSKENG-------------SLKQVI---TLPAISIWSVDCMSNG-------D-IIVGSSDNLVRIFSQE 295 (313)
T ss_dssp EEECTTTC-------------CEEEEE---ECSSSCEEEEEECTTS-------C-EEEEETTSCEEEEESC
T ss_pred EEEECCCC-------------ceeEEE---eccCceEEEEEEccCC-------C-EEEEeCCCcEEEEeCC
Confidence 99999876 444443 3588899999999998 6 6679999999999975
No 77
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-32 Score=223.19 Aligned_cols=210 Identities=17% Similarity=0.279 Sum_probs=180.0
Q ss_pred ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeE
Q 037555 48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF 127 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 127 (298)
....+.+|.+.|++++|+|++++|++++ .|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.||.|
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~-----~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i 98 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCS-----KDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSI 98 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEE-----SSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEE
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEe-----CCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence 4567889999999999999999999995 48999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC-----CeEEEEEccCCcceeeee--------ecC
Q 037555 128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD-----KTVKIWAVENKSSVKQIL--------ALP 194 (298)
Q Consensus 128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~--------~~~ 194 (298)
++||+.. ...+..+. +...|.+++|+|++++|++++.+ +.|++||++.......+. .+.
T Consensus 99 ~iwd~~~-------~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 170 (369)
T 3zwl_B 99 KLWDVSN-------GQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII 170 (369)
T ss_dssp EEEETTT-------CCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE
T ss_pred EEEECCC-------CcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc
Confidence 9999987 44555555 78899999999999999999998 999999998765322111 222
Q ss_pred CCCC--ceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555 195 PFNS--SVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE 272 (298)
Q Consensus 195 ~~~~--~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 272 (298)
.+.. .+.+++|+|++ .+|++++.||.|++||+++.. ..... +..|...|.+++|+|++
T Consensus 171 ~~~~~~~~~~~~~~~~~-----~~l~~~~~dg~i~i~d~~~~~------------~~~~~---~~~~~~~v~~~~~~~~~ 230 (369)
T 3zwl_B 171 THEGLDAATVAGWSTKG-----KYIIAGHKDGKISKYDVSNNY------------EYVDS---IDLHEKSISDMQFSPDL 230 (369)
T ss_dssp CCTTCCCEEEEEECGGG-----CEEEEEETTSEEEEEETTTTT------------EEEEE---EECCSSCEEEEEECTTS
T ss_pred CCcCccceeEEEEcCCC-----CEEEEEcCCCEEEEEECCCCc------------EeEEE---EecCCCceeEEEECCCC
Confidence 3333 89999999998 799999999999999998631 34444 33588999999999999
Q ss_pred CCCCCcceEEEeeeCCCcEEEeEec
Q 037555 273 KPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 273 ~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.+|++++.|+.|++||++
T Consensus 231 -------~~l~~~~~d~~i~v~d~~ 248 (369)
T 3zwl_B 231 -------TYFITSSRDTNSFLVDVS 248 (369)
T ss_dssp -------SEEEEEETTSEEEEEETT
T ss_pred -------CEEEEecCCceEEEEECC
Confidence 899999999999999975
No 78
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-33 Score=247.23 Aligned_cols=219 Identities=20% Similarity=0.314 Sum_probs=179.5
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcC--CceeeeccccccccEEEEEEcCC--CCEEEEEeCC
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVG--SWKAMGRLQSHSLTVTQIRFSHD--DNLLLSVSRD 124 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~--~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d 124 (298)
+..+.+|.++|++++|+|++++|++|+. ||.|++||+. +++.+..+.+|...|.+++|+|+ +++|++++.|
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~-----dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D 76 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSS-----DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEET-----TTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT
T ss_pred eeecccCcceeEEEEECCCCCeEEEEEC-----CCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC
Confidence 3567899999999999999999999954 9999999997 56777888999999999999987 8999999999
Q ss_pred CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC--CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEE
Q 037555 125 RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF--GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTA 202 (298)
Q Consensus 125 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~ 202 (298)
|.|++||+.... ......+..|...|.+++|+|+ ++.+++++.||.|++||+++....... .+..|...|.+
T Consensus 77 g~I~vwd~~~~~-----~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~-~~~~~~~~v~~ 150 (753)
T 3jro_A 77 GKVLIWKEENGR-----WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNS 150 (753)
T ss_dssp SCEEEEEEETTE-----EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE-EEECCSSCEEE
T ss_pred CeEEEEECCCCc-----ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee-EeecCCCceEE
Confidence 999999998732 3366777889999999999999 999999999999999999987443322 44568899999
Q ss_pred EEEeeccc--------cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecC---
Q 037555 203 LSWVGLDR--------QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTH--- 271 (298)
Q Consensus 203 ~~~~~~~~--------~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--- 271 (298)
++|+|... .+++.++++|+.||.|++||+++... .......+.+|...|.+++|+|+
T Consensus 151 l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~------------~~~~~~~~~~h~~~V~~l~~sp~~~~ 218 (753)
T 3jro_A 151 ASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ------------TYVLESTLEGHSDWVRDVAWSPTVLL 218 (753)
T ss_dssp EEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT------------EEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred EEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc------------cceeeeeecCCCCcEEEEEeccCCCC
Confidence 99999410 00127999999999999999987631 11222235579999999999999
Q ss_pred CCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 272 EKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 272 ~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+ .+|++++.||.|++||++
T Consensus 219 ~-------~~l~s~s~Dg~I~iwd~~ 237 (753)
T 3jro_A 219 R-------SYLASVSQDRTCIIWTQD 237 (753)
T ss_dssp S-------EEEEEEESSSCEEEEEES
T ss_pred C-------CEEEEEecCCEEEEecCC
Confidence 7 899999999999999985
No 79
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.5e-32 Score=229.54 Aligned_cols=252 Identities=20% Similarity=0.305 Sum_probs=205.4
Q ss_pred ccccceeeeecCcccccc--cCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCC
Q 037555 3 AATRETVERHGNDGLDTL--ESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGK 69 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~ 69 (298)
+..++.|+..+|+.+..+ .+|.+.|.++.|. |.+..++++ .+|+ .+..+.+|...|.+++++ +.
T Consensus 124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fs-pdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~ 200 (420)
T 4gga_A 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SY 200 (420)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TT
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCcEEEEEEC-CCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CC
Confidence 456788999999987665 4777889999999 567777766 4564 478889999999999885 57
Q ss_pred EEEeEeccCCCCceEEEEEEcCCc-eeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEe
Q 037555 70 LVASSCKAQSTAAAEIWLWEVGSW-KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQ 148 (298)
Q Consensus 70 ~l~~~~~~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 148 (298)
+|++|+ .|+.+++||.... ..+..+.+|...+..+.|+|+++++++++.|+.+++|+....... ...+...
T Consensus 201 ~l~sgs-----~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~---~~~~~~~ 272 (420)
T 4gga_A 201 ILSSGS-----RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG---WVPLQTF 272 (420)
T ss_dssp EEEEEE-----TTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSC---SCCSEEE
T ss_pred EEEEEe-----CCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccccc---ceeeeee
Confidence 899995 4899999998764 445678899999999999999999999999999999999865432 2335566
Q ss_pred eccCCceEEEEEccCC-CEEEE--eeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee--cC
Q 037555 149 EAHKRIIWSCSWNPFG-HEFAT--GSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM--ES 223 (298)
Q Consensus 149 ~~~~~~v~~~~~~~~~-~~l~~--~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~--~d 223 (298)
..|...|.+++|+|.+ ..+++ |+.|+.|++||++++.... .+. ....+.++.|+|++ ..+++++ .|
T Consensus 273 ~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~---~~~-~~~~v~~~~~~~~~-----~~lv~~sg~~d 343 (420)
T 4gga_A 273 TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS---AVD-AHSQVCSILWSPHY-----KELISGHGFAQ 343 (420)
T ss_dssp CCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEE---EEE-CSSCEEEEEEETTT-----TEEEEEECTTT
T ss_pred cccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccce---eec-cccceeeeeecCCC-----CeEEEEEecCC
Confidence 7789999999999965 55555 4579999999999988776 333 45678999999988 5666544 78
Q ss_pred CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 224 GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 224 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+.|+|||+.+. .++.. +.+|...|++++|+|++ .+|+||+.|++|+|||+.
T Consensus 344 ~~I~iwd~~~~-------------~~v~~---l~gH~~~V~~l~~spdg-------~~l~S~s~D~tvriWdv~ 394 (420)
T 4gga_A 344 NQLVIWKYPTM-------------AKVAE---LKGHTSRVLSLTMSPDG-------ATVASAAADETLRLWRCF 394 (420)
T ss_dssp CCEEEEETTTC-------------CEEEE---ECCCSSCEEEEEECTTS-------SCEEEEETTTEEEEECCS
T ss_pred CEEEEEECCCC-------------cEEEE---EcCCCCCEEEEEEcCCC-------CEEEEEecCCeEEEEECC
Confidence 99999999876 55555 45799999999999999 899999999999999973
No 80
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=9.3e-33 Score=229.55 Aligned_cols=208 Identities=18% Similarity=0.281 Sum_probs=175.9
Q ss_pred eEEeccCCCceEEEEEcC-CCCEEEeEeccCCCCceEEEEEEcCCc-------eeeeccccccccEEEEEEcCCC-CEEE
Q 037555 49 SHKLYGHGNELFSLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGSW-------KAMGRLQSHSLTVTQIRFSHDD-NLLL 119 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~~l~ 119 (298)
+..+.+|.+.|++++|+| ++.+|++++ .|+.|++|++.++ +.+..+.+|...|.+++|+|++ ++|+
T Consensus 74 ~~~~~~h~~~V~~~~~~p~~~~~l~s~s-----~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~ 148 (402)
T 2aq5_A 74 VPLVCGHTAPVLDIAWCPHNDNVIASGS-----EDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLL 148 (402)
T ss_dssp CCCBCCCSSCEEEEEECTTCTTEEEEEE-----TTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEE
T ss_pred CceEecCCCCEEEEEeCCCCCCEEEEEe-----CCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEE
Confidence 455779999999999999 999999995 4999999999887 5667788999999999999998 6999
Q ss_pred EEeCCCeEEEEEeccCCCCccceeeeEEe--eccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeec-CCC
Q 037555 120 SVSRDRQFSVFAIQRTGTGEIDYQLIARQ--EAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILAL-PPF 196 (298)
Q Consensus 120 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-~~~ 196 (298)
+++.||.|++||+.. ...+..+ ..|...|.+++|+|++++|++++.||.|++||+++++.+. .+ ..|
T Consensus 149 s~~~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~~ 218 (402)
T 2aq5_A 149 SAGCDNVILVWDVGT-------GAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVA---EKDRPH 218 (402)
T ss_dssp EEETTSCEEEEETTT-------TEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECSS
T ss_pred EEcCCCEEEEEECCC-------CCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceee---eeccCC
Confidence 999999999999987 5566777 7899999999999999999999999999999999987766 44 456
Q ss_pred CCc-eEEEEEeeccccCCccEEEEe---ecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555 197 NSS-VTALSWVGLDRQKNHGFLAVG---MESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE 272 (298)
Q Consensus 197 ~~~-v~~~~~~~~~~~~~~~~l~~g---~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 272 (298)
... +.+++|+|++ .+|++| +.|+.|++||+++.... .... ...|...|.+++|+|++
T Consensus 219 ~~~~~~~~~~~~~~-----~~l~~g~~~~~d~~i~iwd~~~~~~~------------~~~~--~~~~~~~v~~~~~s~~~ 279 (402)
T 2aq5_A 219 EGTRPVHAVFVSEG-----KILTTGFSRMSERQVALWDTKHLEEP------------LSLQ--ELDTSSGVLLPFFDPDT 279 (402)
T ss_dssp CSSSCCEEEECSTT-----EEEEEEECTTCCEEEEEEETTBCSSC------------SEEE--ECCCCSSCEEEEEETTT
T ss_pred CCCcceEEEEcCCC-----cEEEEeccCCCCceEEEEcCccccCC------------ceEE--eccCCCceeEEEEcCCC
Confidence 554 8999999988 789998 78999999999876321 1111 11366789999999999
Q ss_pred CCCCCcceEEE-eeeCCCcEEEeEec
Q 037555 273 KPKNSRTMQLA-SCGADNTVRVFQVN 297 (298)
Q Consensus 273 ~~~~~~~~~l~-s~~~d~~i~iw~~~ 297 (298)
.+|+ +++.|+.|++||++
T Consensus 280 -------~~l~~~g~~dg~i~i~d~~ 298 (402)
T 2aq5_A 280 -------NIVYLCGKGDSSIRYFEIT 298 (402)
T ss_dssp -------TEEEEEETTCSCEEEEEEC
T ss_pred -------CEEEEEEcCCCeEEEEEec
Confidence 6665 56679999999985
No 81
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=5.6e-33 Score=218.99 Aligned_cols=251 Identities=14% Similarity=0.133 Sum_probs=179.2
Q ss_pred ccccceeeeecC---cccccccCCCCCceeeeccCCCcccccccCCCCceEEeccCCCceEEEEEcCC----CCEEEeEe
Q 037555 3 AATRETVERHGN---DGLDTLESVPDAVPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDHQ----GKLVASSC 75 (298)
Q Consensus 3 ~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~----~~~l~~~~ 75 (298)
+...+.++...+ +.++++..|..+|..+.+.|..- .+.-..+- .-+...|.+++|+|+ ++.+++++
T Consensus 62 ~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~------~~~~~~v~sla~spd~~~~~~~l~s~g 134 (356)
T 2w18_A 62 EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVY-NLVCVALG------NLEIREIRALFCSSDDESEKQVLLKSG 134 (356)
T ss_dssp SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCC-SCEEEEEC------SSSEEEEEEECC------CCEEEEEEE
T ss_pred cceEEEcccCCCccceeeEEEeccCceeEEEEEcCccc-ceeeeeec------cccccceEEEEECCCccccccEEEeCC
Confidence 345677788888 88999999999999999885332 22211111 114456777777777 66666654
Q ss_pred ccC---------------CCCceEEEEEEc-CCceeeeccccccccEEEEEEcC---CCCEEEEEeCCCeEEEEEeccCC
Q 037555 76 KAQ---------------STAAAEIWLWEV-GSWKAMGRLQSHSLTVTQIRFSH---DDNLLLSVSRDRQFSVFAIQRTG 136 (298)
Q Consensus 76 ~~~---------------~~~d~~i~vw~~-~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~ 136 (298)
.+. .+.|+.|++|++ .+++.+..+.+|...+..++|++ ++.+|++++.|++|+|||+.+
T Consensus 135 ~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~T-- 212 (356)
T 2w18_A 135 NIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKT-- 212 (356)
T ss_dssp EEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTT--
T ss_pred CeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCC--
Confidence 210 134888889988 44777777778888888888888 678999999999999999998
Q ss_pred CCccceeeeEEeeccC---CceEEEEEccCCCEE------------EEeeCCCeEEEEEccCCcceeeee-ec-CCCCCc
Q 037555 137 TGEIDYQLIARQEAHK---RIIWSCSWNPFGHEF------------ATGSRDKTVKIWAVENKSSVKQIL-AL-PPFNSS 199 (298)
Q Consensus 137 ~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l------------~~~~~dg~i~~wd~~~~~~~~~~~-~~-~~~~~~ 199 (298)
.+.++.+..|. ..+.+++|+|++.++ ++|+.|++|++||..+++.+..+. .+ .+|...
T Consensus 213 -----Gk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~ 287 (356)
T 2w18_A 213 -----GQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGR 287 (356)
T ss_dssp -----CCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCC
T ss_pred -----CcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcce
Confidence 56677776543 367788999999876 567889999999999887665221 11 245444
Q ss_pred eEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEE-EEEeecCCCCCCCc
Q 037555 200 VTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVN-RMAWKTHEKPKNSR 278 (298)
Q Consensus 200 v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~ 278 (298)
+.+..++ + .++++|+.|++|+|||+.++ +++..+ .+|...+. .++|+|++
T Consensus 288 ~lsg~~s--g-----~~lASgS~DgTIkIWDl~tG-------------k~l~tL---~gH~~~vvs~vafSPDG------ 338 (356)
T 2w18_A 288 FLEGDVK--D-----HCAAAILTSGTIAIWDLLLG-------------QCTALL---PPVSDQHWSFVKWSGTD------ 338 (356)
T ss_dssp EEEEEEE--T-----TEEEEEETTSCEEEEETTTC-------------SEEEEE---CCC--CCCCEEEECSSS------
T ss_pred eEccccC--C-----CEEEEEcCCCcEEEEECCCC-------------cEEEEe---cCCCCCeEEEEEECCCC------
Confidence 4433333 4 68999999999999999987 666654 46776555 68999999
Q ss_pred ceEEEeeeCCCcEEEeEec
Q 037555 279 TMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 279 ~~~l~s~~~d~~i~iw~~~ 297 (298)
.+|++|+.|++|||||+.
T Consensus 339 -~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 339 -SHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp -SEEEEECTTSCEEEEEEC
T ss_pred -CEEEEEECCCcEEEecCC
Confidence 899999999999999974
No 82
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.7e-32 Score=230.85 Aligned_cols=244 Identities=18% Similarity=0.260 Sum_probs=206.5
Q ss_pred ccccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEc--CCCC
Q 037555 3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCD--HQGK 69 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s--~~~~ 69 (298)
++.++.++..+++.+..+.+|.+.|.++.+.+. + .++++ .+|+ .+..+.+|...|.+++|+ +++.
T Consensus 141 dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~-~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 218 (464)
T 3v7d_B 141 DKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-G-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK 218 (464)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEECST-T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCE
T ss_pred CCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCC-C-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCC
Confidence 567888999999999999999999999999843 3 45444 4564 477888999999999998 5788
Q ss_pred EEEeEeccCCCCceEEEEEEcCCcee-----------------------eeccccccccEEEEEEcCCCCEEEEEeCCCe
Q 037555 70 LVASSCKAQSTAAAEIWLWEVGSWKA-----------------------MGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQ 126 (298)
Q Consensus 70 ~l~~~~~~~~~~d~~i~vw~~~~~~~-----------------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 126 (298)
+|++++. |+.|++||+.++.. +..+.+|...|.++ +++++++++++.||.
T Consensus 219 ~l~s~s~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~ 291 (464)
T 3v7d_B 219 YIVTGSR-----DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNT 291 (464)
T ss_dssp EEEEEET-----TSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSC
T ss_pred EEEEEcC-----CCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCe
Confidence 9999954 89999999987653 34566788888877 567899999999999
Q ss_pred EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEe
Q 037555 127 FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWV 206 (298)
Q Consensus 127 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~ 206 (298)
|++||+.. ...+..+..|...|.+++|+|+++++++++.||.|++||+++++.+. .+.+|...|.+++|+
T Consensus 292 i~vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~ 361 (464)
T 3v7d_B 292 LIVWDVAQ-------MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY---TLQGHTALVGLLRLS 361 (464)
T ss_dssp EEEEETTT-------TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEC
T ss_pred EEEEECCC-------CcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEE---EEeCCCCcEEEEEEc
Confidence 99999987 66778888999999999999999999999999999999999988776 677899999999998
Q ss_pred eccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeee
Q 037555 207 GLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCG 286 (298)
Q Consensus 207 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~ 286 (298)
+ .+|++++.||.|++||+++. ...... .|...+..++|++++ .+|++++
T Consensus 362 ~-------~~l~s~s~dg~v~vwd~~~~-------------~~~~~~----~~~~~~~~~~~~~~~-------~~l~~~~ 410 (464)
T 3v7d_B 362 D-------KFLVSAAADGSIRGWDANDY-------------SRKFSY----HHTNLSAITTFYVSD-------NILVSGS 410 (464)
T ss_dssp S-------SEEEEEETTSEEEEEETTTC-------------CEEEEE----ECTTCCCEEEEEECS-------SEEEEEE
T ss_pred C-------CEEEEEeCCCcEEEEECCCC-------------ceeeee----cCCCCccEEEEEeCC-------CEEEEec
Confidence 4 68999999999999999865 333332 256678889999999 8999988
Q ss_pred CCCcEEEeEec
Q 037555 287 ADNTVRVFQVN 297 (298)
Q Consensus 287 ~d~~i~iw~~~ 297 (298)
|+.|++||++
T Consensus 411 -dg~i~iwd~~ 420 (464)
T 3v7d_B 411 -ENQFNIYNLR 420 (464)
T ss_dssp -TTEEEEEETT
T ss_pred -CCeEEEEECC
Confidence 9999999975
No 83
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-32 Score=225.84 Aligned_cols=239 Identities=18% Similarity=0.260 Sum_probs=194.7
Q ss_pred ccCCCCCceeeeccCCCcc-ccccc------CCCCc---------------eEEecc----------CCCceEEEEEcCC
Q 037555 20 LESVPDAVPAVFTEPPIED-QLAWH------TLWPE---------------SHKLYG----------HGNELFSLCCDHQ 67 (298)
Q Consensus 20 ~~~~~~~v~~~~~~~~~~~-~~~~~------~~~~~---------------~~~~~~----------h~~~v~~~~~s~~ 67 (298)
...|.+.|.++.+.| .+. .++++ .+|+. ...+.. |.+.|++++|+|+
T Consensus 41 ~~~~~~~v~~~~~s~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 119 (425)
T 1r5m_A 41 EIVKLDNIVSSTWNP-LDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD 119 (425)
T ss_dssp EEEECSCCSEEEECS-SCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT
T ss_pred eeeccCceEEEEECC-CCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC
Confidence 345568999999994 455 66654 45544 222333 6779999999999
Q ss_pred CCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc-------
Q 037555 68 GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI------- 140 (298)
Q Consensus 68 ~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~------- 140 (298)
+++|++++. |+.|++|+ .+++.+..+..|...|.+++|+|++++|++++.|+.|++||+........
T Consensus 120 ~~~l~~~~~-----dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~ 193 (425)
T 1r5m_A 120 GNSIVTGVE-----NGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETG 193 (425)
T ss_dssp SSEEEEEET-----TSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---
T ss_pred CCEEEEEeC-----CCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccC
Confidence 999999954 89999999 56788888899999999999999999999999999999999875321000
Q ss_pred ------------------------------------------ceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEE
Q 037555 141 ------------------------------------------DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKI 178 (298)
Q Consensus 141 ------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 178 (298)
.......+..|...|.+++|+|++++|++++.|+.|++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i 273 (425)
T 1r5m_A 194 GSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRI 273 (425)
T ss_dssp ------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred ccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 01122345578889999999999999999999999999
Q ss_pred EEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCc
Q 037555 179 WAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFAC 258 (298)
Q Consensus 179 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (298)
||+++.+... .+..|...|.+++|+|++ ++++++.|+.|++||+++. ..+..+ ..
T Consensus 274 ~d~~~~~~~~---~~~~~~~~i~~~~~~~~~------~l~~~~~d~~i~i~d~~~~-------------~~~~~~---~~ 328 (425)
T 1r5m_A 274 WHGGNGNSQN---CFYGHSQSIVSASWVGDD------KVISCSMDGSVRLWSLKQN-------------TLLALS---IV 328 (425)
T ss_dssp ECSSSBSCSE---EECCCSSCEEEEEEETTT------EEEEEETTSEEEEEETTTT-------------EEEEEE---EC
T ss_pred EECCCCccce---EecCCCccEEEEEECCCC------EEEEEeCCCcEEEEECCCC-------------cEeEec---cc
Confidence 9999887776 566788999999999975 8999999999999999876 444443 35
Q ss_pred ccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 259 HVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 259 ~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
|...|.+++|+|++ .+|++++.||.|++||++
T Consensus 329 ~~~~i~~~~~s~~~-------~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 329 DGVPIFAGRISQDG-------QKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp TTCCEEEEEECTTS-------SEEEEEETTSCEEEEECH
T ss_pred CCccEEEEEEcCCC-------CEEEEEECCCeEEEEECC
Confidence 88899999999999 899999999999999975
No 84
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3e-32 Score=255.60 Aligned_cols=241 Identities=17% Similarity=0.279 Sum_probs=205.8
Q ss_pred ccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceE
Q 037555 16 GLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAE 84 (298)
Q Consensus 16 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~ 84 (298)
....+.+|.+.|.++.|+ |.+..++++ .+|+ .+..+.+|...|++++|+|++++|++++. |+.
T Consensus 607 ~~~~~~~h~~~v~~~~~s-~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-----d~~ 680 (1249)
T 3sfz_A 607 SRLVVRPHTDAVYHACFS-QDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSA-----DKK 680 (1249)
T ss_dssp CSEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-----TSE
T ss_pred ceEEEecccccEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeC-----CCe
Confidence 345667999999999999 566677665 3553 47888999999999999999999999954 899
Q ss_pred EEEEEcCCceeeeccccccccEEEEEEcC--CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc
Q 037555 85 IWLWEVGSWKAMGRLQSHSLTVTQIRFSH--DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP 162 (298)
Q Consensus 85 i~vw~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 162 (298)
|++||+.+++.+..+.+|...|.+++|+| ++.++++++.|+.|++||+.. ......+.+|...|.+++|+|
T Consensus 681 v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~-------~~~~~~~~~h~~~v~~~~~sp 753 (1249)
T 3sfz_A 681 VKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQ-------KECRNTMFGHTNSVNHCRFSP 753 (1249)
T ss_dssp EEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTS-------SSEEEEECCCSSCEEEEEECS
T ss_pred EEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCC-------cchhheecCCCCCEEEEEEec
Confidence 99999999999999999999999999999 556899999999999999987 556778889999999999999
Q ss_pred CCCEEEEeeCCCeEEEEEccCCcceeeeee--------------------------------------------------
Q 037555 163 FGHEFATGSRDKTVKIWAVENKSSVKQILA-------------------------------------------------- 192 (298)
Q Consensus 163 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-------------------------------------------------- 192 (298)
++++|++++.||.|++||++++.....+..
T Consensus 754 ~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~ 833 (1249)
T 3sfz_A 754 DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLA 833 (1249)
T ss_dssp STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEE
T ss_pred CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCcee
Confidence 999999999999999999987654332210
Q ss_pred --cCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeec
Q 037555 193 --LPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKT 270 (298)
Q Consensus 193 --~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 270 (298)
..+|...+.+++|+|++ .++++++.|+.|++||+.++ ..... +.+|...|.+++|+|
T Consensus 834 ~~~~~~~~~v~~~~~sp~~-----~~l~~~~~dg~v~vwd~~~~-------------~~~~~---~~~h~~~v~~v~~sp 892 (1249)
T 3sfz_A 834 EIHTGHHSTIQYCDFSPYD-----HLAVIALSQYCVELWNIDSR-------------LKVAD---CRGHLSWVHGVMFSP 892 (1249)
T ss_dssp EEECSSSSCCCEEEECSST-----TEEEEECSSSCEEEEETTTT-------------EEEEE---ECCCSSCEEEEEECT
T ss_pred EEcCCCCCceEEEEEcCCC-----CEEEEEeCCCeEEEEEcCCC-------------ceeee---cCCCccceEEEEECC
Confidence 11466778899999988 79999999999999999876 44444 447999999999999
Q ss_pred CCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 271 HEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 271 ~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
++ .+|++++.|+.|++|++.
T Consensus 893 dg-------~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 893 DG-------SSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp TS-------SEEEEEETTSCEEEEEHH
T ss_pred CC-------CEEEEEeCCCeEEEEEcc
Confidence 99 899999999999999963
No 85
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-32 Score=229.38 Aligned_cols=240 Identities=10% Similarity=0.039 Sum_probs=182.6
Q ss_pred CcccccccCCCCCceeeeccCCCcccccccCCCC--ceEEec-cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEc
Q 037555 14 NDGLDTLESVPDAVPAVFTEPPIEDQLAWHTLWP--ESHKLY-GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEV 90 (298)
Q Consensus 14 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~-~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~ 90 (298)
++....+++|+..|..+.|.|. + ..-...+|. ....+. +|...|.+++|||+|+.||+++. ||.|++|+.
T Consensus 42 ~~~~~~l~gh~~~v~~V~FsPd-g-~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~-----dg~V~iwd~ 114 (588)
T 2j04_A 42 PKYAKDINCNSKNLFHVKEFPL-E-FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSN-----NGNVSVFKD 114 (588)
T ss_dssp ECCCSCCSSBGGGTEEEEEECC-C-CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEET-----TSCEEEEET
T ss_pred ccccceecCCCccEEEEEECCC-C-CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeC-----CCcEEEEeC
Confidence 4445566899999999999954 4 122223332 122333 56888999999999999999954 999999996
Q ss_pred CCceeeeccccccc-----cEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEe----eccCCceEEEEEc
Q 037555 91 GSWKAMGRLQSHSL-----TVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQ----EAHKRIIWSCSWN 161 (298)
Q Consensus 91 ~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~ 161 (298)
+. .+..+. |.. .|.+++|+|||++|++|+.||+|++||+..........-.+..+ .+|...|.+++|+
T Consensus 115 ~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawS 191 (588)
T 2j04_A 115 NK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWY 191 (588)
T ss_dssp TE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEE
T ss_pred Cc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEc
Confidence 54 555566 665 49999999999999999999999999998742111001134554 5677899999999
Q ss_pred cCCCEEEEeeCCCeEEEEEccCCcceeeeeec-CCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccccccc
Q 037555 162 PFGHEFATGSRDKTVKIWAVENKSSVKQILAL-PPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVS 240 (298)
Q Consensus 162 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~ 240 (298)
|++ +++++.|+.|++||+...........+ .+|...|.+++|+ + ..|++++ ++.|++||+..+
T Consensus 192 Pdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g-----~~LASa~-~~tIkLWd~~~~------ 255 (588)
T 2j04_A 192 EDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D-----YKVVLTC-PGYVHKIDLKNY------ 255 (588)
T ss_dssp TTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T-----TEEEEEC-SSEEEEEETTTT------
T ss_pred CCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--C-----CEEEEEe-CCeEEEEECCCC------
Confidence 998 888999999999999887642111134 3677899999999 4 5888887 699999999865
Q ss_pred CCCCCCcceeeeeccCCcccceEEEEEe--ecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 241 TPAPSTANIIIRFDPFACHVAAVNRMAW--KTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
... .+. . +|...|.++.| +|++ ..|++++.||+ ++|.++
T Consensus 256 -------~~~-~~~-~-gh~~~V~~va~~~s~d~-------~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 256 -------SIS-SLK-T-GSLENFHIIPLNHEKES-------TILLMSNKTSY-KVLLED 296 (588)
T ss_dssp -------EEE-EEE-C-SCCSCCCEEEETTCSSC-------EEEEECSSCEE-EEEESS
T ss_pred -------eEE-EEE-c-CCCceEEEEEeeeCCCC-------CEEEEEcCCCC-EEEeec
Confidence 221 111 2 69999999999 9999 89999999999 999863
No 86
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.1e-32 Score=224.54 Aligned_cols=200 Identities=19% Similarity=0.346 Sum_probs=175.0
Q ss_pred cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQ 133 (298)
Q Consensus 54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 133 (298)
.|...|++++|+|++++|++++. |+.|++||+.+++.+..+.+|...|.+++| +++++++++.||.|++||++
T Consensus 132 ~~~~~v~~v~~s~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~ 204 (401)
T 4aez_A 132 DESTYVASVKWSHDGSFLSVGLG-----NGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVR 204 (401)
T ss_dssp CTTCCEEEEEECTTSSEEEEEET-----TSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT
T ss_pred CCCCCEEEEEECCCCCEEEEECC-----CCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecc
Confidence 38899999999999999999954 899999999999999999999999999999 56799999999999999998
Q ss_pred cCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCC
Q 037555 134 RTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKN 213 (298)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (298)
.. ......+..|...|.+++|+|++++|++++.|+.|++||+++.+... .+..|...|.+++|+|++.
T Consensus 205 ~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~---~~~~~~~~v~~~~~~p~~~--- 272 (401)
T 4aez_A 205 IA------NHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKF---TKTNHNAAVKAVAWCPWQS--- 272 (401)
T ss_dssp SS------SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEE---EECCCSSCCCEEEECTTST---
T ss_pred cC------cceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccE---EecCCcceEEEEEECCCCC---
Confidence 53 34567778899999999999999999999999999999999887766 5667899999999999874
Q ss_pred ccEEEEee--cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEe--eeCCC
Q 037555 214 HGFLAVGM--ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLAS--CGADN 289 (298)
Q Consensus 214 ~~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s--~~~d~ 289 (298)
.++++++ .|+.|++||++++ .....+. +...|.+++|+|++ .+|++ ++.||
T Consensus 273 -~ll~~~~gs~d~~i~i~d~~~~-------------~~~~~~~----~~~~v~~~~~s~~~-------~~l~~~~g~~dg 327 (401)
T 4aez_A 273 -NLLATGGGTMDKQIHFWNAATG-------------ARVNTVD----AGSQVTSLIWSPHS-------KEIMSTHGFPDN 327 (401)
T ss_dssp -TEEEEECCTTTCEEEEEETTTC-------------CEEEEEE----CSSCEEEEEECSSS-------SEEEEEECTTTC
T ss_pred -CEEEEecCCCCCEEEEEECCCC-------------CEEEEEe----CCCcEEEEEECCCC-------CeEEEEeecCCC
Confidence 6777765 7999999999876 5555543 56789999999999 78888 44899
Q ss_pred cEEEeEec
Q 037555 290 TVRVFQVN 297 (298)
Q Consensus 290 ~i~iw~~~ 297 (298)
.|++||++
T Consensus 328 ~i~v~~~~ 335 (401)
T 4aez_A 328 NLSIWSYS 335 (401)
T ss_dssp EEEEEEEE
T ss_pred cEEEEecC
Confidence 99999975
No 87
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-32 Score=229.21 Aligned_cols=232 Identities=14% Similarity=0.172 Sum_probs=175.7
Q ss_pred CCcccccccCCCC----ceEEe-ccCCCceEEEEEcC-CCCEEEeEeccCCCCceEEEEEEcCC---ceeee-ccc-ccc
Q 037555 35 PIEDQLAWHTLWP----ESHKL-YGHGNELFSLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGS---WKAMG-RLQ-SHS 103 (298)
Q Consensus 35 ~~~~~~~~~~~~~----~~~~~-~~h~~~v~~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~~---~~~~~-~~~-~~~ 103 (298)
|.+..++....|+ .+..+ .+|.+.|++++|+| ++++|++|+ .|+.|++||+.+ +.... .+. .|.
T Consensus 37 ~~~~~~~~~~~w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s-----~dg~v~vwd~~~~~~~~~~~~~~~~~h~ 111 (437)
T 3gre_A 37 PIQEIVRSPNMGNLRGKLIATLMENEPNSITSSAVSPGETPYLITGS-----DQGVIKIWNLKEIIVGEVYSSSLTYDCS 111 (437)
T ss_dssp CCCCCCCCCCGGGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEE-----TTSEEEEEEHHHHHTTCCCSCSEEEECS
T ss_pred CccccccccccccccceEEeeeccCCCCceEEEEECCCCCCEEEEec-----CCceEEEeECcccccCcccceeeeccCC
Confidence 4444454444563 46777 88999999999999 999999995 499999999976 33221 222 589
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc----ceeeeEEee--c--cCCceEEEE--EccCCCEEEEeeCC
Q 037555 104 LTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI----DYQLIARQE--A--HKRIIWSCS--WNPFGHEFATGSRD 173 (298)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~~~~~~~~~--~--~~~~v~~~~--~~~~~~~l~~~~~d 173 (298)
..|.+++|+|++++|++++.||.|++||+.....+.. ....+..+. . +...+.++. +++++.+|++++.|
T Consensus 112 ~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d 191 (437)
T 3gre_A 112 STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNL 191 (437)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETT
T ss_pred CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCC
Confidence 9999999999999999999999999999962111100 011112221 1 445666666 55789999999999
Q ss_pred CeEEEEEccCCcceeeeeecCC--CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceee
Q 037555 174 KTVKIWAVENKSSVKQILALPP--FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIII 251 (298)
Q Consensus 174 g~i~~wd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 251 (298)
+.|++||+++.+.+. .+.. |...|++++|+|++ .+|++|+.||.|++||++++ ..+.
T Consensus 192 ~~i~iwd~~~~~~~~---~~~~~~h~~~v~~~~~s~~~-----~~l~s~~~dg~i~iwd~~~~-------------~~~~ 250 (437)
T 3gre_A 192 SRVIIFDIRTLERLQ---IIENSPRHGAVSSICIDEEC-----CVLILGTTRGIIDIWDIRFN-------------VLIR 250 (437)
T ss_dssp SEEEEEETTTCCEEE---EEECCGGGCCEEEEEECTTS-----CEEEEEETTSCEEEEETTTT-------------EEEE
T ss_pred CeEEEEeCCCCeeeE---EEccCCCCCceEEEEECCCC-----CEEEEEcCCCeEEEEEcCCc-------------cEEE
Confidence 999999999988777 4434 78899999999998 79999999999999999876 5555
Q ss_pred eeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 252 RFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 252 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.+. ..|...|.+++|+|.. .+++.+|++++.|+.|++||++
T Consensus 251 ~~~--~~~~~~v~~~~~~~~~---s~~~~~l~s~~~dg~i~iwd~~ 291 (437)
T 3gre_A 251 SWS--FGDHAPITHVEVCQFY---GKNSVIVVGGSSKTFLTIWNFV 291 (437)
T ss_dssp EEB--CTTCEEEEEEEECTTT---CTTEEEEEEESTTEEEEEEETT
T ss_pred EEe--cCCCCceEEEEecccc---CCCccEEEEEcCCCcEEEEEcC
Confidence 543 1477899999666542 0112799999999999999975
No 88
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=9.1e-33 Score=232.47 Aligned_cols=231 Identities=14% Similarity=0.231 Sum_probs=183.6
Q ss_pred CCCCCceeeeccCCCccccccc------CCCC----------------ceEEeccCC------------CceEEEEEcCC
Q 037555 22 SVPDAVPAVFTEPPIEDQLAWH------TLWP----------------ESHKLYGHG------------NELFSLCCDHQ 67 (298)
Q Consensus 22 ~~~~~v~~~~~~~~~~~~~~~~------~~~~----------------~~~~~~~h~------------~~v~~~~~s~~ 67 (298)
.+.+.|.++.|+ |.+..++++ .+|+ ....+.+|. ..|++++|+|+
T Consensus 26 ~~~~~V~~v~~s-~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 26 AEADIISTVEFN-HSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CGGGSEEEEEEC-SSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cccCcEEEEEEC-CCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 456789999999 567777765 3553 366788998 88999999999
Q ss_pred C--CEEEeEeccCCCCceEEEEEEcCCceee---------------------------------------ec-ccccccc
Q 037555 68 G--KLVASSCKAQSTAAAEIWLWEVGSWKAM---------------------------------------GR-LQSHSLT 105 (298)
Q Consensus 68 ~--~~l~~~~~~~~~~d~~i~vw~~~~~~~~---------------------------------------~~-~~~~~~~ 105 (298)
+ ..|++++ .|+.|++|++.+++.. .. ..+|...
T Consensus 105 ~~~~~l~s~s-----~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 179 (447)
T 3dw8_B 105 KNAAQFLLST-----NDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYH 179 (447)
T ss_dssp CSSSEEEEEE-----CSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSC
T ss_pred CCcceEEEeC-----CCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcc
Confidence 8 7899995 4999999999764432 12 3579999
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeE-------EeeccCCceEEEEEccCC-CEEEEeeCCCeEE
Q 037555 106 VTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIA-------RQEAHKRIIWSCSWNPFG-HEFATGSRDKTVK 177 (298)
Q Consensus 106 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~ 177 (298)
|.+++|+|++++|+++ .|+.|++||++.. ..... .+..|...|.+++|+|++ ++|++++.||.|+
T Consensus 180 v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~ 252 (447)
T 3dw8_B 180 INSISINSDYETYLSA-DDLRINLWHLEIT------DRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIR 252 (447)
T ss_dssp CCEEEECTTSSEEEEE-CSSEEEEEETTEE------EEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred eEEEEEcCCCCEEEEe-CCCeEEEEECCCC------CceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEE
Confidence 9999999999999998 7999999999842 22222 355789999999999998 9999999999999
Q ss_pred EEEccCCcc----eeeeeecCCCCC------------ceEEEEEeeccccCCccEEEEeecCCcEEEEEeee-ccccccc
Q 037555 178 IWAVENKSS----VKQILALPPFNS------------SVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV-NRTNDVS 240 (298)
Q Consensus 178 ~wd~~~~~~----~~~~~~~~~~~~------------~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~-~~~~~~~ 240 (298)
+||+++.+. .. .+..+.. .|.+++|+|++ .+|++++. +.|++||++. +
T Consensus 253 iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-----~~l~~~~~-~~v~iwd~~~~~------ 317 (447)
T 3dw8_B 253 LCDMRASALCDRHSK---LFEEPEDPSNRSFFSEIISSISDVKFSHSG-----RYMMTRDY-LSVKVWDLNMEN------ 317 (447)
T ss_dssp EEETTTCSSSCTTCE---EECCC-----CCHHHHHTTCEEEEEECTTS-----SEEEEEES-SEEEEEETTCCS------
T ss_pred EEECcCCccccceee---EeccCCCccccccccccCceEEEEEECCCC-----CEEEEeeC-CeEEEEeCCCCc------
Confidence 999998775 33 4555654 89999999998 79999998 9999999986 4
Q ss_pred CCCCCCcceeeeeccCCcccc---------------eEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 241 TPAPSTANIIIRFDPFACHVA---------------AVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~---------------~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.++..+ .+|.. .+..++|+|++ .+|++++.||.|++||++
T Consensus 318 -------~~~~~~---~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~-------~~l~s~s~dg~v~iwd~~ 372 (447)
T 3dw8_B 318 -------RPVETY---QVHEYLRSKLCSLYENDCIFDKFECCWNGSD-------SVVMTGSYNNFFRMFDRN 372 (447)
T ss_dssp -------SCSCCE---ESCGGGTTTHHHHHHTSGGGCCCCEEECTTS-------SEEEEECSTTEEEEEETT
T ss_pred -------ccccee---eccccccccccccccccccccceEEEECCCC-------CEEEEeccCCEEEEEEcC
Confidence 222222 23432 13359999999 899999999999999974
No 89
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=2.4e-32 Score=228.97 Aligned_cols=218 Identities=19% Similarity=0.319 Sum_probs=179.0
Q ss_pred EEeccCCCceEEEEEcCC-CCEEEeEeccCCCCceEEEEEEcCC----------ceeeeccccccccEEEEEEcCCCC-E
Q 037555 50 HKLYGHGNELFSLCCDHQ-GKLVASSCKAQSTAAAEIWLWEVGS----------WKAMGRLQSHSLTVTQIRFSHDDN-L 117 (298)
Q Consensus 50 ~~~~~h~~~v~~~~~s~~-~~~l~~~~~~~~~~d~~i~vw~~~~----------~~~~~~~~~~~~~v~~~~~~~~~~-~ 117 (298)
....+|.+.|++++|+|+ +.+|+++ +.+|.|++|++.+ .+.+..+.+|...|.+++|+|++. +
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~-----~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 196 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATK-----TPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGY 196 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEE-----CSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEE-----CCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCe
Confidence 455689999999999997 6788888 4589999999986 566777889999999999999988 9
Q ss_pred EEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCC
Q 037555 118 LLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVKQILALPPF 196 (298)
Q Consensus 118 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 196 (298)
|++++.||.|++|++...............+..|...|.+++|+| ++.+|++++.||.|++||+++......+..+..|
T Consensus 197 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~ 276 (430)
T 2xyi_A 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH 276 (430)
T ss_dssp EEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECC
T ss_pred EEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecC
Confidence 999999999999999874322211233456678999999999999 6789999999999999999987422222245578
Q ss_pred CCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCC
Q 037555 197 NSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKN 276 (298)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 276 (298)
...|++++|+|++. .++++|+.||.|++||++... ..+.. +..|...|.+++|+|+++
T Consensus 277 ~~~v~~i~~~p~~~----~~l~tg~~dg~v~vwd~~~~~------------~~~~~---~~~h~~~v~~i~~sp~~~--- 334 (430)
T 2xyi_A 277 TAEVNCLSFNPYSE----FILATGSADKTVALWDLRNLK------------LKLHS---FESHKDEIFQVQWSPHNE--- 334 (430)
T ss_dssp SSCEEEEEECSSCT----TEEEEEETTSEEEEEETTCTT------------SCSEE---EECCSSCEEEEEECSSCT---
T ss_pred CCCeEEEEeCCCCC----CEEEEEeCCCeEEEEeCCCCC------------CCeEE---eecCCCCEEEEEECCCCC---
Confidence 89999999999883 579999999999999998742 23333 335899999999999983
Q ss_pred CcceEEEeeeCCCcEEEeEec
Q 037555 277 SRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 277 ~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.+|++++.|+.|++||++
T Consensus 335 ---~~l~s~~~d~~i~iwd~~ 352 (430)
T 2xyi_A 335 ---TILASSGTDRRLHVWDLS 352 (430)
T ss_dssp ---TEEEEEETTSCCEEEEGG
T ss_pred ---CEEEEEeCCCcEEEEeCC
Confidence 579999999999999985
No 90
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.3e-31 Score=226.61 Aligned_cols=238 Identities=16% Similarity=0.264 Sum_probs=196.4
Q ss_pred ccccccCCCCCc-eeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCce
Q 037555 16 GLDTLESVPDAV-PAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAA 83 (298)
Q Consensus 16 ~~~~~~~~~~~v-~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~ 83 (298)
....+.+|.+.+ .++.+. +..++++ ++|+ .+..+.+|.+.|++++|+|++ .|++|+ .|+
T Consensus 113 ~~~~l~~h~~~v~~~~~~~---~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s-----~dg 183 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQFE---DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGS-----TDR 183 (464)
T ss_dssp EEEEEECCSSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEE-----TTS
T ss_pred ceEEEcCCCCCcEEEEEEC---CCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEe-----CCC
Confidence 455788998886 555554 3455554 3553 577888999999999999988 888885 499
Q ss_pred EEEEEEcCCceeeeccccccccEEEEEEc--CCCCEEEEEeCCCeEEEEEeccCCCCccc----------------eeee
Q 037555 84 EIWLWEVGSWKAMGRLQSHSLTVTQIRFS--HDDNLLLSVSRDRQFSVFAIQRTGTGEID----------------YQLI 145 (298)
Q Consensus 84 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----------------~~~~ 145 (298)
.|++||+++++.+..+.+|...|.+++|+ ++++++++++.||.|++||+......... ....
T Consensus 184 ~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (464)
T 3v7d_B 184 TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 263 (464)
T ss_dssp CEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEE
T ss_pred CEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEE
Confidence 99999999999999999999999999998 57789999999999999999865422110 0125
Q ss_pred EEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCc
Q 037555 146 ARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGV 225 (298)
Q Consensus 146 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~ 225 (298)
..+.+|...|.++ +++++++++++.||.|++||+++.+.+. .+.+|...|.+++|+|++ .++++|+.||.
T Consensus 264 ~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~-----~~l~sg~~dg~ 333 (464)
T 3v7d_B 264 GVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLY---ILSGHTDRIYSTIYDHER-----KRCISASMDTT 333 (464)
T ss_dssp EEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEETTT-----TEEEEEETTSC
T ss_pred EEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEE---EecCCCCCEEEEEEcCCC-----CEEEEEeCCCc
Confidence 5667788888876 5678999999999999999999888776 667799999999999998 79999999999
Q ss_pred EEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 226 IELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 226 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
|++||++++ ..+.. +.+|...|.+++|++ .+|++++.||.|++||++
T Consensus 334 i~vwd~~~~-------------~~~~~---~~~h~~~v~~~~~~~---------~~l~s~s~dg~v~vwd~~ 380 (464)
T 3v7d_B 334 IRIWDLENG-------------ELMYT---LQGHTALVGLLRLSD---------KFLVSAAADGSIRGWDAN 380 (464)
T ss_dssp EEEEETTTT-------------EEEEE---ECCCSSCEEEEEECS---------SEEEEEETTSEEEEEETT
T ss_pred EEEEECCCC-------------cEEEE---EeCCCCcEEEEEEcC---------CEEEEEeCCCcEEEEECC
Confidence 999999876 55555 446999999999973 699999999999999975
No 91
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.3e-32 Score=244.00 Aligned_cols=207 Identities=13% Similarity=0.211 Sum_probs=172.0
Q ss_pred EeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 037555 51 KLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVF 130 (298)
Q Consensus 51 ~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 130 (298)
...+|...|++++|+|++++||+|+. |+.|+||+..+.+....+. |...|.+++|+| +++|++++.|+.|++|
T Consensus 12 ~~~gh~~~V~~lafspdg~~lAsgs~-----Dg~I~lw~~~~~~~~~~~~-~~~~V~~l~fsp-g~~L~S~s~D~~v~lW 84 (902)
T 2oaj_A 12 NKYGMSSKPIAAAFDFTQNLLAIATV-----TGEVHIYGQQQVEVVIKLE-DRSAIKEMRFVK-GIYLVVINAKDTVYVL 84 (902)
T ss_dssp EEEECSSCEEEEEEETTTTEEEEEET-----TSEEEEECSTTCEEEEECS-SCCCEEEEEEET-TTEEEEEETTCEEEEE
T ss_pred cccCCCCCcEEEEECCCCCEEEEEeC-----CCEEEEEeCCCcEEEEEcC-CCCCEEEEEEcC-CCEEEEEECcCeEEEE
Confidence 34589999999999999999999954 8999999998777665554 788999999999 8899999999999999
Q ss_pred EeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCccee-ee-------eecCCCCCceEE
Q 037555 131 AIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVK-QI-------LALPPFNSSVTA 202 (298)
Q Consensus 131 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-~~-------~~~~~~~~~v~~ 202 (298)
|+.. ...+..+. |...|++++|+|++++|++|+.||.|++||+++.+... .+ ..+.+|...|.+
T Consensus 85 d~~~-------~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~s 156 (902)
T 2oaj_A 85 SLYS-------QKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVS 156 (902)
T ss_dssp ETTT-------CSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCE
T ss_pred ECCC-------CcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEE
Confidence 9987 34455554 67889999999999999999999999999999876431 00 134678899999
Q ss_pred EEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeec---------------cCCcccceEEEEE
Q 037555 203 LSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFD---------------PFACHVAAVNRMA 267 (298)
Q Consensus 203 ~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~v~~~~ 267 (298)
++|+|++. ..+++|+.|+.| +||+++.+ ....+. ....|...|++++
T Consensus 157 l~~sp~~~----~~l~~g~~dg~v-lWd~~~~~-------------~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~ 218 (902)
T 2oaj_A 157 IQWNPRDI----GTVLISYEYVTL-TYSLVENE-------------IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSL 218 (902)
T ss_dssp EEEETTEE----EEEEEECSSCEE-EEETTTTE-------------EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEE
T ss_pred EEEccCCC----CEEEEEeCCCcE-EEECCCCc-------------eEEEEecccCCcCCCcccccccccccCCCeEEEE
Confidence 99999642 689999999999 99998763 332222 1234568899999
Q ss_pred eecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 268 WKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 268 ~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
|+|++ .+|++++.|++|++||++
T Consensus 219 fspdg-------~~lasgs~Dg~i~lWd~~ 241 (902)
T 2oaj_A 219 YHPNS-------LHIITIHEDNSLVFWDAN 241 (902)
T ss_dssp ECTTS-------SEEEEEETTCCEEEEETT
T ss_pred EcCCC-------CEEEEEECCCeEEEEECC
Confidence 99999 899999999999999974
No 92
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.5e-31 Score=222.93 Aligned_cols=242 Identities=18% Similarity=0.323 Sum_probs=208.2
Q ss_pred ccccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEE
Q 037555 3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLV 71 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l 71 (298)
++.++.++..+++.+..+.+|...|.++.+. +..++++ .+|+ .+..+.+|...|.++.|+ +..|
T Consensus 138 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l 212 (445)
T 2ovr_B 138 DNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR---DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRV 212 (445)
T ss_dssp TSCEEEEETTTCCEEEECCCCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEE
T ss_pred CCcEEEEECCCCcEEEEEcCCCCCEEEEEec---CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEE
Confidence 5678889999999999999999999999887 3344444 3553 467888999999999996 5679
Q ss_pred EeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc
Q 037555 72 ASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH 151 (298)
Q Consensus 72 ~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 151 (298)
++++ .|+.|++||+.+++.+..+.+|...|.++.| +++++++++.||.|++||++. ...+..+..|
T Consensus 213 ~s~s-----~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~ 278 (445)
T 2ovr_B 213 VSGS-----RDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPET-------ETCLHTLQGH 278 (445)
T ss_dssp EEEE-----TTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGG-------TEEEEEECCC
T ss_pred EEEe-----CCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCC-------CcEeEEecCC
Confidence 9995 4999999999999999999999999999999 788999999999999999987 5677888889
Q ss_pred CCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEe
Q 037555 152 KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSI 231 (298)
Q Consensus 152 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~ 231 (298)
...|.++.| ++.++++++.||.|++||+++++... .+..|...+.++.+.+ .++++|+.||.|++||+
T Consensus 279 ~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~v~~~~~~~-------~~l~~~~~dg~i~vwd~ 346 (445)
T 2ovr_B 279 TNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIH---TLTGHQSLTSGMELKD-------NILVSGNADSTVKIWDI 346 (445)
T ss_dssp SSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEE---EECCCCSCEEEEEEET-------TEEEEEETTSCEEEEET
T ss_pred CCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEE---EEcCCcccEEEEEEeC-------CEEEEEeCCCeEEEEEC
Confidence 999999999 78899999999999999999988776 6667888888888754 68999999999999999
Q ss_pred eecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 232 SVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+++ ..+..+.....|...|.+++|+ + .+|++++.||.|++||++
T Consensus 347 ~~~-------------~~~~~~~~~~~~~~~v~~~~~~--~-------~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 347 KTG-------------QCLQTLQGPNKHQSAVTCLQFN--K-------NFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp TTC-------------CEEEEECSTTSCSSCEEEEEEC--S-------SEEEEEETTSEEEEEETT
T ss_pred CCC-------------cEEEEEccCCCCCCCEEEEEEC--C-------CEEEEEeCCCeEEEEECC
Confidence 876 5566655445688999999996 3 699999999999999975
No 93
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=8.8e-32 Score=225.93 Aligned_cols=249 Identities=18% Similarity=0.331 Sum_probs=204.3
Q ss_pred cccccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCE
Q 037555 2 YAATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKL 70 (298)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~ 70 (298)
.++.++.++..+++.+..+.+|...|.++.+. +..++++ .+|+ .+..+.+|...|.+++|++ ..
T Consensus 151 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~---~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~ 225 (435)
T 1p22_A 151 RDNTIKIWDKNTLECKRILTGHTGSVLCLQYD---ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GM 225 (435)
T ss_dssp SSSCEEEEESSSCCEEEEECCCSSCEEEEECC---SSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TE
T ss_pred CCCeEEEEeCCCCeEEEEEcCCCCcEEEEEEC---CCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CE
Confidence 35678889999999999999999999999884 4555554 3453 5778889999999999974 58
Q ss_pred EEeEeccCCCCceEEEEEEcCCceee---eccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEE
Q 037555 71 VASSCKAQSTAAAEIWLWEVGSWKAM---GRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR 147 (298)
Q Consensus 71 l~~~~~~~~~~d~~i~vw~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 147 (298)
|++++ .|+.|++||+.+++.. ..+.+|...|.+++| +++++++++.||.|++||+++ ...+..
T Consensus 226 l~s~s-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~-------~~~~~~ 291 (435)
T 1p22_A 226 MVTCS-----KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTST-------CEFVRT 291 (435)
T ss_dssp EEEEE-----TTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTT-------CCEEEE
T ss_pred EEEee-----CCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCc-------CcEEEE
Confidence 99995 4899999999887655 567789999999999 788999999999999999987 566788
Q ss_pred eeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEE
Q 037555 148 QEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIE 227 (298)
Q Consensus 148 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~ 227 (298)
+..|...|.++.|+ ++++++|+.||.|++||+++++.+. .+.+|...|.+++| ++ .+|++|+.||.|+
T Consensus 292 ~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~--~~-----~~l~sg~~dg~i~ 359 (435)
T 1p22_A 292 LNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLR---VLEGHEELVRCIRF--DN-----KRIVSGAYDGKIK 359 (435)
T ss_dssp EECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEC--CS-----SEEEEEETTSCEE
T ss_pred EcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEE---EEeCCcCcEEEEEe--cC-----CEEEEEeCCCcEE
Confidence 88999999999994 7899999999999999999988776 66789999999999 34 6899999999999
Q ss_pred EEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 228 LWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 228 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+||+......... ....++.. +.+|...|.+++| ++ .+|++++.||.|++||+.
T Consensus 360 vwd~~~~~~~~~~----~~~~~~~~---~~~h~~~v~~l~~--~~-------~~l~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 360 VWDLVAALDPRAP----AGTLCLRT---LVEHSGRVFRLQF--DE-------FQIVSSSHDDTILIWDFL 413 (435)
T ss_dssp EEEHHHHTSTTSC----TTTTEEEE---ECCCSSCCCCEEE--CS-------SCEEECCSSSEEEEEC--
T ss_pred EEECCCCCCcccc----ccchheee---ccCCCCCeEEEEe--CC-------CEEEEEeCCCEEEEEECC
Confidence 9999876422110 00013333 4579999999999 55 689999999999999974
No 94
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=2.1e-32 Score=224.17 Aligned_cols=250 Identities=14% Similarity=0.205 Sum_probs=190.1
Q ss_pred ecCcccccccCCCCCceeeeccCCC--ccccccc------CCCCc-------eEEeccCCCceEEEEEcCCCCEEEeEec
Q 037555 12 HGNDGLDTLESVPDAVPAVFTEPPI--EDQLAWH------TLWPE-------SHKLYGHGNELFSLCCDHQGKLVASSCK 76 (298)
Q Consensus 12 ~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~------~~~~~-------~~~~~~h~~~v~~~~~s~~~~~l~~~~~ 76 (298)
...+.+..+.+|.+.|.++.|.|.. +..++++ .+|+. ...+.+|...|++++|+|++++|++++
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~- 105 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS- 105 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEE-
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEc-
Confidence 3455677889999999999999654 5666665 35531 267889999999999999999999995
Q ss_pred cCCCCceEEEEEEcCCceeeeccccccccEEEEEE--cCCCCEEEEEeCCCeEEEEEeccCCCCccce------------
Q 037555 77 AQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRF--SHDDNLLLSVSRDRQFSVFAIQRTGTGEIDY------------ 142 (298)
Q Consensus 77 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------ 142 (298)
.|+.|++||+.+++.+. +..|...|.+++| +|++++|++++.||.|++||++.........
T Consensus 106 ----~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 180 (368)
T 3mmy_A 106 ----CDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY 180 (368)
T ss_dssp ----TTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET
T ss_pred ----CCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC
Confidence 48999999999888766 5569999999999 8899999999999999999998643211000
Q ss_pred ----------------------eeeEEeeccCCceEEEEEccCCCE----EEEeeCCCeEEEEEccCCcceeeeeecCCC
Q 037555 143 ----------------------QLIARQEAHKRIIWSCSWNPFGHE----FATGSRDKTVKIWAVENKSSVKQILALPPF 196 (298)
Q Consensus 143 ----------------------~~~~~~~~~~~~v~~~~~~~~~~~----l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 196 (298)
........+...+.++.+.++... +++++.||.|++||++..........+..|
T Consensus 181 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 260 (368)
T 3mmy_A 181 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCH 260 (368)
T ss_dssp TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECS
T ss_pred CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeee
Confidence 000000112234455555554433 999999999999999987432222244445
Q ss_pred CC------------ceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEE
Q 037555 197 NS------------SVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVN 264 (298)
Q Consensus 197 ~~------------~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 264 (298)
.. .|.+++|+|++ .+|++++.||.|++||++++ ..+.. +.+|...|.
T Consensus 261 ~~~~~~~~~~~~~~~v~~~~~sp~~-----~~l~s~~~dg~i~iwd~~~~-------------~~~~~---~~~~~~~v~ 319 (368)
T 3mmy_A 261 RSNGTNTSAPQDIYAVNGIAFHPVH-----GTLATVGSDGRFSFWDKDAR-------------TKLKT---SEQLDQPIS 319 (368)
T ss_dssp EEC----CCCEEECCEEEEEECTTT-----CCEEEEETTSCEEEEETTTT-------------EEEEE---CCCCSSCEE
T ss_pred ecccccccccccccceEEEEEecCC-----CEEEEEccCCeEEEEECCCC-------------cEEEE---ecCCCCCce
Confidence 44 79999999998 79999999999999999876 44444 457999999
Q ss_pred EEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555 265 RMAWKTHEKPKNSRTMQLASCGADNTVRVFQ 295 (298)
Q Consensus 265 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~ 295 (298)
+++|+|++ .+|++++.|+..+.|+
T Consensus 320 ~~~~s~~g-------~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 320 ACCFNHNG-------NIFAYASSYDWSKGHE 343 (368)
T ss_dssp EEEECTTS-------SCEEEEECCCSTTCGG
T ss_pred EEEECCCC-------CeEEEEeccccccccc
Confidence 99999999 8999999987655544
No 95
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3e-31 Score=220.40 Aligned_cols=223 Identities=17% Similarity=0.269 Sum_probs=179.3
Q ss_pred ceEEeccCCCceEEEEEcC-CCCEEEeEeccCCCCceEEEEEEcCCceeeeccc-------------cccccEEEEEEcC
Q 037555 48 ESHKLYGHGNELFSLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ-------------SHSLTVTQIRFSH 113 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~-------------~~~~~v~~~~~~~ 113 (298)
....+.+|.+.|++++|+| ++++|++++. |+.|++||+.+++....+. +|...|.+++|+|
T Consensus 35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 109 (408)
T 4a11_B 35 DRDVERIHGGGINTLDIEPVEGRYMLSGGS-----DGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYP 109 (408)
T ss_dssp TEEECCCCSSCEEEEEECTTTCCEEEEEET-----TSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECT
T ss_pred ceeeeeccCCcEEEEEEecCCCCEEEEEcC-----CCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEcc
Confidence 4677889999999999999 9999999954 8999999999876655443 5999999999999
Q ss_pred -CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCC---CEEEEeeCCCeEEEEEccCCcceee
Q 037555 114 -DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG---HEFATGSRDKTVKIWAVENKSSVKQ 189 (298)
Q Consensus 114 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~~wd~~~~~~~~~ 189 (298)
++.+|++++.||.|++||+.. ......+. +...+.++.|+|.+ .++++++.|+.|++||+++++...
T Consensus 110 ~~~~~l~s~~~d~~i~iwd~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~- 180 (408)
T 4a11_B 110 HDTGMFTSSSFDKTLKVWDTNT-------LQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH- 180 (408)
T ss_dssp TCTTCEEEEETTSEEEEEETTT-------TEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE-
T ss_pred CCCcEEEEEeCCCeEEEeeCCC-------Cccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee-
Confidence 778999999999999999987 44444444 67889999999844 599999999999999999888776
Q ss_pred eeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEee
Q 037555 190 ILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWK 269 (298)
Q Consensus 190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 269 (298)
.+..|...|.+++|+|++. .++++++.||.|++||++..........................|...|.+++|+
T Consensus 181 --~~~~~~~~v~~~~~~~~~~----~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 254 (408)
T 4a11_B 181 --ILQGHRQEILAVSWSPRYD----YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT 254 (408)
T ss_dssp --EECCCCSCEEEEEECSSCT----TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC
T ss_pred --eecCCCCcEEEEEECCCCC----cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc
Confidence 6667899999999999983 4699999999999999987642211110000001111111235789999999999
Q ss_pred cCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 270 THEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 270 ~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
|++ .+|++++.|+.|++||++
T Consensus 255 ~~~-------~~l~~~~~dg~i~vwd~~ 275 (408)
T 4a11_B 255 SDG-------LHLLTVGTDNRMRLWNSS 275 (408)
T ss_dssp TTS-------SEEEEEETTSCEEEEETT
T ss_pred CCC-------CEEEEecCCCeEEEEECC
Confidence 999 899999999999999975
No 96
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-31 Score=212.84 Aligned_cols=230 Identities=23% Similarity=0.327 Sum_probs=192.5
Q ss_pred cccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCce
Q 037555 15 DGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAA 83 (298)
Q Consensus 15 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~ 83 (298)
+.+..+.+|.+.|.++.+ +.+..++++ .+|+ ....+..|...|.+++|+|++++|++++. |+
T Consensus 9 ~~~~~l~~h~~~v~~~~~--~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg 81 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA--VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGK-----DT 81 (313)
T ss_dssp EEEEEECCCSSCEEEEEE--EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEET-----TS
T ss_pred HHHHHhhCCCCCcEEEEe--cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecC-----CC
Confidence 567889999999999998 455556655 4554 36677889999999999999999999954 89
Q ss_pred EEEEEEcCCc---eeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEE
Q 037555 84 EIWLWEVGSW---KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW 160 (298)
Q Consensus 84 ~i~vw~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 160 (298)
.|++|++... +.+..+.+|...|.++.| +++++++++.||.|++|| . ......+..|...+.++.|
T Consensus 82 ~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~-------~~~~~~~~~~~~~v~~~~~ 150 (313)
T 3odt_A 82 MINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--E-------GSLVYNLQAHNASVWDAKV 150 (313)
T ss_dssp CEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--T-------TEEEEEEECCSSCEEEEEE
T ss_pred eEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--C-------CcEEEecccCCCceeEEEE
Confidence 9999998654 556677889999999999 577999999999999999 2 4567777889999999999
Q ss_pred cc-CCCEEEEeeCCCeEEEEEccCCcceeeeeecCC-CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccccc
Q 037555 161 NP-FGHEFATGSRDKTVKIWAVENKSSVKQILALPP-FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTND 238 (298)
Q Consensus 161 ~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~ 238 (298)
.| +++++++++.||.|++||.. +... .+.. +...+.+++|+|++ . +++++.|+.|++||++++
T Consensus 151 ~~~~~~~l~~~~~d~~i~i~d~~--~~~~---~~~~~~~~~i~~~~~~~~~-----~-~~~~~~dg~i~i~d~~~~---- 215 (313)
T 3odt_A 151 VSFSENKFLTASADKTIKLWQND--KVIK---TFSGIHNDVVRHLAVVDDG-----H-FISCSNDGLIKLVDMHTG---- 215 (313)
T ss_dssp EETTTTEEEEEETTSCEEEEETT--EEEE---EECSSCSSCEEEEEEEETT-----E-EEEEETTSEEEEEETTTC----
T ss_pred ccCCCCEEEEEECCCCEEEEecC--ceEE---EEeccCcccEEEEEEcCCC-----e-EEEccCCCeEEEEECCch----
Confidence 98 89999999999999999943 3333 3334 78899999999987 5 999999999999999876
Q ss_pred ccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 239 VSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+.+..+ .+|...|.+++|+|++ .|++++.||.|++||++
T Consensus 216 ---------~~~~~~---~~~~~~i~~~~~~~~~--------~l~~~~~dg~v~iwd~~ 254 (313)
T 3odt_A 216 ---------DVLRTY---EGHESFVYCIKLLPNG--------DIVSCGEDRTVRIWSKE 254 (313)
T ss_dssp ---------CEEEEE---ECCSSCEEEEEECTTS--------CEEEEETTSEEEEECTT
T ss_pred ---------hhhhhh---hcCCceEEEEEEecCC--------CEEEEecCCEEEEEECC
Confidence 444443 4689999999999997 48899999999999974
No 97
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=9.5e-32 Score=242.26 Aligned_cols=208 Identities=16% Similarity=0.228 Sum_probs=183.4
Q ss_pred ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeE
Q 037555 48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF 127 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 127 (298)
..+.+.+|.+.|++++|+|++++|++++ .+|.|++||+.+++.+..+..|...|.+++|+|++++|++++.||.|
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~-----~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 79 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTL-----YSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI 79 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEE-----TTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEe-----CCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeE
Confidence 5678899999999999999999999995 48999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCc-ceeeeeecCCCCCceEEEEEe
Q 037555 128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKS-SVKQILALPPFNSSVTALSWV 206 (298)
Q Consensus 128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~~~~v~~~~~~ 206 (298)
++||+.+ ...+..+..|...|.+++|+|++.+|++++.||.|++||+++.. ... .+..|...|.+++|+
T Consensus 80 ~vw~~~~-------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~---~~~~~~~~v~~~~~~ 149 (814)
T 3mkq_A 80 RVFNYNT-------GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQ---TFEGHEHFVMCVAFN 149 (814)
T ss_dssp EEEETTT-------CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEE---EEECCSSCEEEEEEE
T ss_pred EEEECCC-------CcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEE---EEcCCCCcEEEEEEE
Confidence 9999987 56677888899999999999999999999999999999998763 333 455788999999999
Q ss_pred e-ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeec--CCCCCCCcceEEE
Q 037555 207 G-LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKT--HEKPKNSRTMQLA 283 (298)
Q Consensus 207 ~-~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~l~ 283 (298)
| ++ ..+++++.||.|++||+... .....+. ..+...|..++|+| ++ .+|+
T Consensus 150 p~~~-----~~l~~~~~dg~v~vwd~~~~-------------~~~~~~~--~~~~~~v~~~~~~~~~~~-------~~l~ 202 (814)
T 3mkq_A 150 PKDP-----STFASGCLDRTVKVWSLGQS-------------TPNFTLT--TGQERGVNYVDYYPLPDK-------PYMI 202 (814)
T ss_dssp TTEE-----EEEEEEETTSEEEEEETTCS-------------SCSEEEE--CCCTTCCCEEEECCSTTC-------CEEE
T ss_pred cCCC-----CEEEEEeCCCeEEEEECCCC-------------cceeEEe--cCCCCCEEEEEEEECCCC-------CEEE
Confidence 9 66 79999999999999999765 2223322 23558899999999 77 8999
Q ss_pred eeeCCCcEEEeEec
Q 037555 284 SCGADNTVRVFQVN 297 (298)
Q Consensus 284 s~~~d~~i~iw~~~ 297 (298)
+++.||.|++||++
T Consensus 203 ~~~~dg~i~~~d~~ 216 (814)
T 3mkq_A 203 TASDDLTIKIWDYQ 216 (814)
T ss_dssp EECTTSEEEEEETT
T ss_pred EEeCCCEEEEEECC
Confidence 99999999999964
No 98
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=8.5e-31 Score=220.57 Aligned_cols=247 Identities=19% Similarity=0.301 Sum_probs=209.4
Q ss_pred ccccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEE
Q 037555 3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLV 71 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l 71 (298)
++.++.++..+++.+..+.+|...|.++.+. +..++++ .+|+ .+..+.+|...|.+++| ++.+|
T Consensus 178 dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l 252 (445)
T 2ovr_B 178 DRTLKVWNAETGECIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRV 252 (445)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCE
T ss_pred CCeEEEEECCcCcEEEEECCCCCcEEEEEec---CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEE
Confidence 5677888999999999999999999999886 2334443 3453 46788899999999999 68899
Q ss_pred EeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc
Q 037555 72 ASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH 151 (298)
Q Consensus 72 ~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 151 (298)
++++ .|+.|++||+.+++.+..+.+|...|.++.| ++.++++++.||.|++||+++ ...+..+..|
T Consensus 253 ~~~~-----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~-------~~~~~~~~~~ 318 (445)
T 2ovr_B 253 VSGA-----YDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET-------GNCIHTLTGH 318 (445)
T ss_dssp EEEE-----TTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTT-------CCEEEEECCC
T ss_pred EEEc-----CCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCC-------CCEEEEEcCC
Confidence 9995 4899999999999999999999999999999 788999999999999999987 5667788889
Q ss_pred CCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEe
Q 037555 152 KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSI 231 (298)
Q Consensus 152 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~ 231 (298)
...+.++.++ ++++++++.||.|++||+++++.+..+.....|...|.+++|++ .+|++|+.||.|++||+
T Consensus 319 ~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 319 QSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK-------NFVITSSDDGTVKLWDL 389 (445)
T ss_dssp CSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS-------SEEEEEETTSEEEEEET
T ss_pred cccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC-------CEEEEEeCCCeEEEEEC
Confidence 9999888875 67999999999999999999887774433334888999999964 68999999999999999
Q ss_pred eecccccccCCCCCCcceeeeec--cCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCc----EEEeEec
Q 037555 232 SVNRTNDVSTPAPSTANIIIRFD--PFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNT----VRVFQVN 297 (298)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~----i~iw~~~ 297 (298)
.++ +.+..+. ....|...|++++|+|++ .+|++++.||+ |.+||++
T Consensus 390 ~~~-------------~~~~~~~~~~~~~~~~~v~~~~~s~~~-------~~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 390 KTG-------------EFIRNLVTLESGGSGGVVWRIRASNTK-------LVCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp TTC-------------CEEEEEEECTTGGGTCEEEEEEECSSE-------EEEEEECSSSSSCCEEEEEECC
T ss_pred CCC-------------ceeeeeeccccCCCCceEEEEEecCCE-------EEEEEcccCCCCccEEEEEECC
Confidence 877 4444442 124688999999999999 89999999998 9999985
No 99
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.1e-31 Score=219.94 Aligned_cols=219 Identities=18% Similarity=0.272 Sum_probs=167.2
Q ss_pred ceEEeccCCCceEEEEEcCC---CCEEEeEeccCCCCceEEEEEEcCC-ceee-eccccccccEEEEEEcCCCCEEEEEe
Q 037555 48 ESHKLYGHGNELFSLCCDHQ---GKLVASSCKAQSTAAAEIWLWEVGS-WKAM-GRLQSHSLTVTQIRFSHDDNLLLSVS 122 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~---~~~l~~~~~~~~~~d~~i~vw~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~ 122 (298)
.+..+.+|.+.|++++|+|+ |++|++++ .|+.|++||+.+ ++.+ ..+.+|...|.+++|+|++++|++++
T Consensus 31 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~-----~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~ 105 (368)
T 3mmy_A 31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGS-----WANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS 105 (368)
T ss_dssp CEECSSCCSSCEEEEEECCTTSSSEEEEEEE-----TTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred eeEeccCCCCceEEEEEcCCCCCceEEEEEC-----CCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEc
Confidence 56778899999999999999 69999995 489999999987 4444 67888999999999999999999999
Q ss_pred CCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEE--ccCCCEEEEeeCCCeEEEEEccCCcceeeeeec-------
Q 037555 123 RDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW--NPFGHEFATGSRDKTVKIWAVENKSSVKQILAL------- 193 (298)
Q Consensus 123 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~------- 193 (298)
.||.|++||+.. .... ....|...|.+++| +|++++|++++.||.|++||+++.+....+...
T Consensus 106 ~dg~v~iwd~~~-------~~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 177 (368)
T 3mmy_A 106 CDKTAKMWDLSS-------NQAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCAD 177 (368)
T ss_dssp TTSEEEEEETTT-------TEEE-EEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEE
T ss_pred CCCcEEEEEcCC-------CCce-eeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEE
Confidence 999999999986 3333 35679999999999 889999999999999999999987765532110
Q ss_pred -------------------------------CCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCC
Q 037555 194 -------------------------------PPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTP 242 (298)
Q Consensus 194 -------------------------------~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 242 (298)
......+.++.+.+... .....+++++.||.|++|+++.....
T Consensus 178 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dg~i~i~~~~~~~~~----- 251 (368)
T 3mmy_A 178 VIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQ-NKPTGFALGSIEGRVAIHYINPPNPA----- 251 (368)
T ss_dssp EETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTT-SCEEEEEEEETTSEEEEEESSCSCHH-----
T ss_pred ecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCC-CCCCeEEEecCCCcEEEEecCCCCcc-----
Confidence 01123344455544431 01123889999999999999765211
Q ss_pred CCCCcceeeeecc---------CCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 243 APSTANIIIRFDP---------FACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 243 ~~~~~~~~~~~~~---------~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.....+.. ...|...|++++|+|++ .+|++++.||.|++||++
T Consensus 252 -----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-------~~l~s~~~dg~i~iwd~~ 303 (368)
T 3mmy_A 252 -----KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH-------GTLATVGSDGRFSFWDKD 303 (368)
T ss_dssp -----HHSEEEECSEEC----CCCEEECCEEEEEECTTT-------CCEEEEETTSCEEEEETT
T ss_pred -----ccceeeeeeecccccccccccccceEEEEEecCC-------CEEEEEccCCeEEEEECC
Confidence 11111110 11233379999999999 899999999999999975
No 100
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.3e-31 Score=225.53 Aligned_cols=214 Identities=15% Similarity=0.224 Sum_probs=166.4
Q ss_pred cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce-----------eeecccccc------------ccEEEEE
Q 037555 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK-----------AMGRLQSHS------------LTVTQIR 110 (298)
Q Consensus 54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~-----------~~~~~~~~~------------~~v~~~~ 110 (298)
.|.+.|++++|+|+|++||+|+. |+.|+||++.+++ ....+.+|. ..|.+++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~-----dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~ 100 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDK-----GGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIR 100 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEET-----TSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEE
T ss_pred cccCcEEEEEECCCCCEEEEEcC-----CCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEE
Confidence 36789999999999999999954 9999999998776 467788898 8899999
Q ss_pred EcCCC--CEEEEEeCCCeEEEEEeccCCCCcc--------------------------------ceeeeEE-eeccCCce
Q 037555 111 FSHDD--NLLLSVSRDRQFSVFAIQRTGTGEI--------------------------------DYQLIAR-QEAHKRII 155 (298)
Q Consensus 111 ~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~--------------------------------~~~~~~~-~~~~~~~v 155 (298)
|+|++ .+|++++.|+.|++||+........ ....... ...|...|
T Consensus 101 ~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 180 (447)
T 3dw8_B 101 WLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI 180 (447)
T ss_dssp ECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred EcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence 99998 7999999999999999975221000 0001112 35799999
Q ss_pred EEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeee-----ecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEE
Q 037555 156 WSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQIL-----ALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWS 230 (298)
Q Consensus 156 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd 230 (298)
.+++|+|++++|+++ .|+.|++||++......... .+..|...|.+++|+|++. .+|++|+.||.|++||
T Consensus 181 ~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~----~~l~s~~~dg~i~iwd 255 (447)
T 3dw8_B 181 NSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSC----NTFVYSSSKGTIRLCD 255 (447)
T ss_dssp CEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCT----TEEEEEETTSCEEEEE
T ss_pred EEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCC----cEEEEEeCCCeEEEEE
Confidence 999999999999998 79999999998533322111 2456888999999999863 6999999999999999
Q ss_pred eeecccccccCCCCCCcceeeeeccCCccc------------ceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 231 ISVNRTNDVSTPAPSTANIIIRFDPFACHV------------AAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+++..... ..... +..|. ..|.+++|+|++ .+|++++. +.|++||++
T Consensus 256 ~~~~~~~~---------~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-------~~l~~~~~-~~v~iwd~~ 314 (447)
T 3dw8_B 256 MRASALCD---------RHSKL---FEEPEDPSNRSFFSEIISSISDVKFSHSG-------RYMMTRDY-LSVKVWDLN 314 (447)
T ss_dssp TTTCSSSC---------TTCEE---ECCC-----CCHHHHHTTCEEEEEECTTS-------SEEEEEES-SEEEEEETT
T ss_pred CcCCcccc---------ceeeE---eccCCCccccccccccCceEEEEEECCCC-------CEEEEeeC-CeEEEEeCC
Confidence 98764211 00222 22344 499999999999 89999998 999999975
No 101
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-31 Score=222.12 Aligned_cols=209 Identities=13% Similarity=0.056 Sum_probs=171.5
Q ss_pred eccCCCceEEEEEcCCCCEE-EeEeccCCCCceEEEEEEcC--Cceeeeccc--cccccEEEEEEcCCCCEEEEEeCCCe
Q 037555 52 LYGHGNELFSLCCDHQGKLV-ASSCKAQSTAAAEIWLWEVG--SWKAMGRLQ--SHSLTVTQIRFSHDDNLLLSVSRDRQ 126 (298)
Q Consensus 52 ~~~h~~~v~~~~~s~~~~~l-~~~~~~~~~~d~~i~vw~~~--~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~ 126 (298)
..+|.+.|++++|+|++++| +++ +.|+.|++||+. +++.+..+. .|...|.+++|+|++++|++++.+|.
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~-----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~ 172 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACA-----DSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGD 172 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEE-----GGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CCccCCceEEEEEcCCCCEEEEEE-----CCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCc
Confidence 34678899999999999996 777 358999999998 888877776 56789999999999999999999999
Q ss_pred EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC---CCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEE
Q 037555 127 FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF---GHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTAL 203 (298)
Q Consensus 127 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~ 203 (298)
+++|++....... .....+..|...|.+++|+|+ +++|++++.|+.|++||+++++.+.. .+.+|...|.++
T Consensus 173 v~~~~~~~~~~~~---~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~--~~~~h~~~v~~~ 247 (450)
T 2vdu_B 173 VYSIDINSIPEEK---FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK--WLFGHKHFVSSI 247 (450)
T ss_dssp EEEEETTSCCCSS---CCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE--ECCCCSSCEEEE
T ss_pred EEEEecCCccccc---ccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee--eecCCCCceEEE
Confidence 9999997643211 023356789999999999999 99999999999999999998877652 145789999999
Q ss_pred EEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeecc----------------------CCcccc
Q 037555 204 SWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDP----------------------FACHVA 261 (298)
Q Consensus 204 ~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~ 261 (298)
+|+ ++ .+|++++.|+.|++||+++++ .+..+.. ......
T Consensus 248 ~~s-d~-----~~l~s~~~d~~v~vwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (450)
T 2vdu_B 248 CCG-KD-----YLLLSAGGDDKIFAWDWKTGK-------------NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEF 308 (450)
T ss_dssp EEC-ST-----TEEEEEESSSEEEEEETTTCC-------------EEEEEECHHHHGGGCCTTSBC----------CBCC
T ss_pred EEC-CC-----CEEEEEeCCCeEEEEECCCCc-------------EeeeecchhhhhhhhhhcccccccccccccccceE
Confidence 999 77 799999999999999998763 2222210 012346
Q ss_pred eEEEEEeecCCCCCCCcceEEEeee-CCCcEEEeEe
Q 037555 262 AVNRMAWKTHEKPKNSRTMQLASCG-ADNTVRVFQV 296 (298)
Q Consensus 262 ~v~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~iw~~ 296 (298)
.|.+++|+|++ .+|++++ .|+.|++|++
T Consensus 309 ~v~~i~~~~~~-------~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 309 AVSKIIKSKNL-------PFVAFFVEATKCIIILEM 337 (450)
T ss_dssp CEEEEEECSSS-------SEEEEEETTCSEEEEEEE
T ss_pred EEEEEEEeCCC-------CEEEEEECCCCeEEEEEe
Confidence 79999999999 7888888 8999999998
No 102
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5.3e-31 Score=230.13 Aligned_cols=233 Identities=14% Similarity=0.187 Sum_probs=196.2
Q ss_pred cCCCCCceeeeccCCCccccccc-----CCC---------CceEEeccCCCc-eEEEEEcC--CCCEEEeEeccCCCCce
Q 037555 21 ESVPDAVPAVFTEPPIEDQLAWH-----TLW---------PESHKLYGHGNE-LFSLCCDH--QGKLVASSCKAQSTAAA 83 (298)
Q Consensus 21 ~~~~~~v~~~~~~~~~~~~~~~~-----~~~---------~~~~~~~~h~~~-v~~~~~s~--~~~~l~~~~~~~~~~d~ 83 (298)
..|.+.|.++.++ |.+..++.+ .+| .....+.+|... |++++|+| ++++|++++ .|+
T Consensus 15 ~~~~~~v~~~~~s-pdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~-----~dg 88 (615)
T 1pgu_A 15 STQRNFTTHLSYD-PTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGD-----ESG 88 (615)
T ss_dssp CCCTTCCCCCEEE-TTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEE-----TTS
T ss_pred CCccCceeEEEEC-CCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEec-----CCC
Confidence 3677888888888 455555443 233 357788899999 99999999 999999995 489
Q ss_pred EEEEEEcCCc--------eeeeccccccccEEEEEEcCCCCEEEEEeCC----CeEEEEEeccCCCCccceeeeEEeecc
Q 037555 84 EIWLWEVGSW--------KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD----RQFSVFAIQRTGTGEIDYQLIARQEAH 151 (298)
Q Consensus 84 ~i~vw~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~ 151 (298)
.|++||+.++ +.+..+..|...|.+++|+|++++|++++.+ +.|++||. ......+..|
T Consensus 89 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~---------~~~~~~~~~~ 159 (615)
T 1pgu_A 89 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS---------GNSLGEVSGH 159 (615)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT---------CCEEEECCSC
T ss_pred EEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC---------CCcceeeecC
Confidence 9999999754 6667788899999999999999999999988 78888882 3456778899
Q ss_pred CCceEEEEEccCCC-EEEEeeCCCeEEEEEccCCcceeeeeecCCCCC---ceEEEEEeec-cccCCccEEEEeecCCcE
Q 037555 152 KRIIWSCSWNPFGH-EFATGSRDKTVKIWAVENKSSVKQILALPPFNS---SVTALSWVGL-DRQKNHGFLAVGMESGVI 226 (298)
Q Consensus 152 ~~~v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~~~~~~l~~g~~dg~i 226 (298)
...|.+++|+|+++ .+++++.|+.|++||+++.+... .+..|.. .|.+++|+|+ + .+|++++.|+.|
T Consensus 160 ~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~-----~~l~~~~~dg~i 231 (615)
T 1pgu_A 160 SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA---SDRTHHKQGSFVRDVEFSPDSG-----EFVITVGSDRKI 231 (615)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE---EECSSSCTTCCEEEEEECSTTC-----CEEEEEETTCCE
T ss_pred CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceee---eecccCCCCceEEEEEECCCCC-----CEEEEEeCCCeE
Confidence 99999999999997 89999999999999999887766 6667888 9999999999 7 799999999999
Q ss_pred EEEEeeecccccccCCCCCCcceeeee-ccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 227 ELWSISVNRTNDVSTPAPSTANIIIRF-DPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 227 ~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
++||++++ +.+..+ .....|...|.+++|+ ++ .+|++++.|+.|++||++
T Consensus 232 ~vwd~~~~-------------~~~~~~~~~~~~~~~~v~~~~~~-~~-------~~l~~~~~d~~i~~wd~~ 282 (615)
T 1pgu_A 232 SCFDGKSG-------------EFLKYIEDDQEPVQGGIFALSWL-DS-------QKFATVGADATIRVWDVT 282 (615)
T ss_dssp EEEETTTC-------------CEEEECCBTTBCCCSCEEEEEES-SS-------SEEEEEETTSEEEEEETT
T ss_pred EEEECCCC-------------CEeEEecccccccCCceEEEEEc-CC-------CEEEEEcCCCcEEEEECC
Confidence 99999876 444443 1111689999999999 88 899999999999999975
No 103
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.9e-31 Score=216.73 Aligned_cols=248 Identities=14% Similarity=0.119 Sum_probs=189.1
Q ss_pred cccCCCCCceeeeccCCCccccccc------CCCC----c----eEEeccCCCceEEEEEcCCCC-EEEeEeccCCCCce
Q 037555 19 TLESVPDAVPAVFTEPPIEDQLAWH------TLWP----E----SHKLYGHGNELFSLCCDHQGK-LVASSCKAQSTAAA 83 (298)
Q Consensus 19 ~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~----~----~~~~~~h~~~v~~~~~s~~~~-~l~~~~~~~~~~d~ 83 (298)
...+|.+.|.++.+.| .+..++++ .+|+ . ...+.+|...|++++|+|+++ +|++++. |+
T Consensus 6 ~~~~h~~~v~~~~~s~-~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----dg 79 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV-----QG 79 (342)
T ss_dssp CSSCCSSCEEEEEEEG-GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEET-----TS
T ss_pred cccCCCCcEEEEEEcC-CCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcC-----CC
Confidence 3468999999999994 56666554 3553 2 566779999999999999999 9999954 89
Q ss_pred EEEEEEc-CCceeeecccc--ccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc--ceeeeEEeeccCCceEEE
Q 037555 84 EIWLWEV-GSWKAMGRLQS--HSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI--DYQLIARQEAHKRIIWSC 158 (298)
Q Consensus 84 ~i~vw~~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~v~~~ 158 (298)
.|++|++ .+++. ..+.+ |...|.+++|+| ++++++++.|+.|++||++....... ....+..+. |...|.++
T Consensus 80 ~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~ 156 (342)
T 1yfq_A 80 EILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTM 156 (342)
T ss_dssp CEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEE
T ss_pred eEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEE
Confidence 9999999 77654 66778 999999999999 99999999999999999885110000 011122333 78899999
Q ss_pred EEccCCCEEEEeeCCCeEEEEEccC-CcceeeeeecCCCCCceEEEEEee-ccccCCccEEEEeecCCcEEEEEeeeccc
Q 037555 159 SWNPFGHEFATGSRDKTVKIWAVEN-KSSVKQILALPPFNSSVTALSWVG-LDRQKNHGFLAVGMESGVIELWSISVNRT 236 (298)
Q Consensus 159 ~~~~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~l~~g~~dg~i~vwd~~~~~~ 236 (298)
+|+|++ +++++.|+.|++||+++ ....... ....+...+.+++|+| ++ .++++++.||.|++|+++....
T Consensus 157 ~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~-----~~l~~~~~dg~i~i~~~~~~~~ 228 (342)
T 1yfq_A 157 DTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTI-EESGLKYQIRDVALLPKEQ-----EGYACSSIDGRVAVEFFDDQGD 228 (342)
T ss_dssp EECSSE--EEEEESTTEEEEEESSCCTTCCCEE-EECSCSSCEEEEEECSGGG-----CEEEEEETTSEEEEEECCTTCC
T ss_pred EecCCc--EEEEeCCCeEEEEECCcccccccee-eecCCCCceeEEEECCCCC-----CEEEEEecCCcEEEEEEcCCCc
Confidence 999877 99999999999999998 5443222 2335788999999999 88 7999999999999999976510
Q ss_pred ccccCCCCCCcceeeeeccC------CcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 237 NDVSTPAPSTANIIIRFDPF------ACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
... ......+... ..|...|.+++|+|++ .+|++++.||.|++||++
T Consensus 229 ~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-------~~l~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 229 DYN-------SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH-------KFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp STT-------CTTCEEEECCCCCTTCCSSCCCEEEEEECTTT-------CCEEEEETTSCEEEEETT
T ss_pred ccc-------cccceeeecccccccccccceeEEEEEEcCCC-------CEEEEecCCceEEEEcCc
Confidence 000 0112222110 1245599999999999 899999999999999975
No 104
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.7e-30 Score=226.88 Aligned_cols=254 Identities=13% Similarity=0.204 Sum_probs=210.6
Q ss_pred cccceeeeecC----cccccccCCCCC-ceeeeccCC-Cccccccc------CCCCc-------------eEEeccCCCc
Q 037555 4 ATRETVERHGN----DGLDTLESVPDA-VPAVFTEPP-IEDQLAWH------TLWPE-------------SHKLYGHGNE 58 (298)
Q Consensus 4 ~~~~~~~~~~~----~~~~~~~~~~~~-v~~~~~~~~-~~~~~~~~------~~~~~-------------~~~~~~h~~~ 58 (298)
+.++.++..++ +.+..+.+|.+. |.++.+.|- .+..++++ .+|+. ...+.+|..+
T Consensus 39 ~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (615)
T 1pgu_A 39 KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGP 118 (615)
T ss_dssp TEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSC
T ss_pred CeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhccccc
Confidence 45677888888 899999999999 999999941 66666665 45643 3456679999
Q ss_pred eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCC-EEEEEeCCCeEEEEEeccCCC
Q 037555 59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDN-LLLSVSRDRQFSVFAIQRTGT 137 (298)
Q Consensus 59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~ 137 (298)
|.+++|+|++++|++++.+. ...+.|++|| .++.+..+.+|...|.+++|+|+++ ++++++.|+.|++||+..
T Consensus 119 v~~~~~s~~~~~l~~~~~~~-~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~--- 192 (615)
T 1pgu_A 119 ISDISWDFEGRRLCVVGEGR-DNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP--- 192 (615)
T ss_dssp EEEEEECTTSSEEEEEECCS-SCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT---
T ss_pred EEEEEEeCCCCEEEEeccCC-CCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC---
Confidence 99999999999999997521 0127888888 5677788899999999999999998 899999999999999886
Q ss_pred CccceeeeEEeeccCC---ceEEEEEccC-CCEEEEeeCCCeEEEEEccCCcceeeeeec-C---CCCCceEEEEEeecc
Q 037555 138 GEIDYQLIARQEAHKR---IIWSCSWNPF-GHEFATGSRDKTVKIWAVENKSSVKQILAL-P---PFNSSVTALSWVGLD 209 (298)
Q Consensus 138 ~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-~---~~~~~v~~~~~~~~~ 209 (298)
...+..+..|.. .|.+++|+|+ +++|++++.||.|++||+++++.+. .+ . .|...|.+++|+ ++
T Consensus 193 ----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~~~~~~~~~v~~~~~~-~~ 264 (615)
T 1pgu_A 193 ----FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK---YIEDDQEPVQGGIFALSWL-DS 264 (615)
T ss_dssp ----BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE---ECCBTTBCCCSCEEEEEES-SS
T ss_pred ----cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeE---EecccccccCCceEEEEEc-CC
Confidence 667788888998 9999999999 9999999999999999999888776 55 3 688999999999 77
Q ss_pred ccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccC-CcccceEEEEEeecCCCCCCCcceEEEeeeCC
Q 037555 210 RQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPF-ACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD 288 (298)
Q Consensus 210 ~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d 288 (298)
.+|++++.|+.|++||++++ +....+... ..+...+.++.|. ++ .++++++.|
T Consensus 265 -----~~l~~~~~d~~i~~wd~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~l~~~~~~ 318 (615)
T 1pgu_A 265 -----QKFATVGADATIRVWDVTTS-------------KCVQKWTLDKQQLGNQQVGVVAT-GN-------GRIISLSLD 318 (615)
T ss_dssp -----SEEEEEETTSEEEEEETTTT-------------EEEEEEECCTTCGGGCEEEEEEE-ET-------TEEEEEETT
T ss_pred -----CEEEEEcCCCcEEEEECCCC-------------cEEEEEcCCCCcccCceeEEEeC-CC-------CeEEEEECC
Confidence 79999999999999999876 444444321 2345778888886 66 799999999
Q ss_pred CcEEEeEec
Q 037555 289 NTVRVFQVN 297 (298)
Q Consensus 289 ~~i~iw~~~ 297 (298)
+.|++||++
T Consensus 319 g~i~~~d~~ 327 (615)
T 1pgu_A 319 GTLNFYELG 327 (615)
T ss_dssp SCEEEEETT
T ss_pred CCEEEEECC
Confidence 999999964
No 105
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.8e-30 Score=207.61 Aligned_cols=252 Identities=19% Similarity=0.294 Sum_probs=194.8
Q ss_pred ccccceeeeecCcccccc--cCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCC
Q 037555 3 AATRETVERHGNDGLDTL--ESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGK 69 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~ 69 (298)
+..++.|+..+|+.+..+ .+|...|.++.+. |.+..++++ .+|+ .+..+.+|...+.++.+. +.
T Consensus 44 D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~-~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~--~~ 120 (318)
T 4ggc_A 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWI-KEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SY 120 (318)
T ss_dssp TTEEEEEETTTCCEEEEEECCSTTCCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE--TT
T ss_pred CCEEEEEECCCCCEEEEEEecCCCCeEEEEEEC-CCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecC--CC
Confidence 445777888888877665 4667778888888 555666655 3553 467777888888776654 56
Q ss_pred EEEeEeccCCCCceEEEEEEcCCc-eeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEe
Q 037555 70 LVASSCKAQSTAAAEIWLWEVGSW-KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQ 148 (298)
Q Consensus 70 ~l~~~~~~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 148 (298)
.+++++ .++.+++|+.... ..+..+.+|...+..+.+.++++++++++.|+.|++||+...... .......
T Consensus 121 ~l~s~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~ 192 (318)
T 4ggc_A 121 ILSSGS-----RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG---WVPLQTF 192 (318)
T ss_dssp EEEEEE-----TTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB---SCCSEEE
T ss_pred EEEEEe-----cCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc---ccceeee
Confidence 788884 4788888887755 345667789999999999999999999999999999999865432 2234455
Q ss_pred eccCCceEEEEEccCCC-E--EEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEe--ecC
Q 037555 149 EAHKRIIWSCSWNPFGH-E--FATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVG--MES 223 (298)
Q Consensus 149 ~~~~~~v~~~~~~~~~~-~--l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g--~~d 223 (298)
..+...|..+.++|.+. . +++++.++.|++||.+...... .. .+...+..+.|+|.+ ..++++ +.|
T Consensus 193 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~---~~-~~~~~v~~~~~~~~~-----~~~~~~sg~~d 263 (318)
T 4ggc_A 193 TQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS---AV-DAHSQVCSILWSPHY-----KELISGHGFAQ 263 (318)
T ss_dssp CCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEE---EE-ECSSCEEEEEEETTT-----TEEEEEECTTT
T ss_pred cccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccc---cc-cceeeeeeeeecccc-----cceEEEEEcCC
Confidence 66788999999999664 3 3456788999999998877654 22 366789999999988 455544 479
Q ss_pred CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 224 GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 224 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+.|++||++++ +.+.. +.+|...|++|+|+|++ .+|+|++.|++|+|||+.
T Consensus 264 ~~i~iwd~~~~-------------~~~~~---l~gH~~~V~~l~~spdg-------~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 264 NQLVIWKYPTM-------------AKVAE---LKGHTSRVLSLTMSPDG-------ATVASAAADETLRLWRCF 314 (318)
T ss_dssp CCEEEEETTTC-------------CEEEE---ECCCSSCEEEEEECTTS-------SCEEEEETTTEEEEECCS
T ss_pred CEEEEEECCCC-------------cEEEE---EcCCCCCEEEEEEcCCC-------CEEEEEecCCeEEEEECC
Confidence 99999999876 55555 45799999999999999 899999999999999974
No 106
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.2e-30 Score=244.71 Aligned_cols=220 Identities=16% Similarity=0.302 Sum_probs=186.8
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEE
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFS 128 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 128 (298)
...+.+|.+.|++++|+|++++|++|+ .|+.|++||+.+++.+..+.+|...|.+++|+|+++++++++.||.|+
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~~~l~s~~-----~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~ 682 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDGQRIASCG-----ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVK 682 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTSSEEEEEE-----TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred eEEEecccccEEEEEECCCCCEEEEEe-----CCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEE
Confidence 456789999999999999999999995 489999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCccceeeeEEeeccCCceEEEEEcc--CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEe
Q 037555 129 VFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP--FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWV 206 (298)
Q Consensus 129 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~ 206 (298)
+||+.+ ...+..+..|...|.+++|+| ++.++++++.|+.|++||+++++... .+.+|...|.+++|+
T Consensus 683 vwd~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s 752 (1249)
T 3sfz_A 683 IWDSAT-------GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN---TMFGHTNSVNHCRFS 752 (1249)
T ss_dssp EEETTT-------CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEE---EECCCSSCEEEEEEC
T ss_pred EEECCC-------CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhh---eecCCCCCEEEEEEe
Confidence 999987 567788889999999999999 55689999999999999999988776 667899999999999
Q ss_pred eccccCCccEEEEeecCCcEEEEEeeecccccccCC-----------------------CCC------------------
Q 037555 207 GLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTP-----------------------APS------------------ 245 (298)
Q Consensus 207 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-----------------------~~~------------------ 245 (298)
|++ .++++++.||.|++||+.++........ .+.
T Consensus 753 p~~-----~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~ 827 (1249)
T 3sfz_A 753 PDD-----ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIH 827 (1249)
T ss_dssp SST-----TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETT
T ss_pred cCC-----CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence 998 7999999999999999976532211000 000
Q ss_pred CcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 246 TANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 246 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.......+ ..+|...|.+++|+|++ .++++++.|+.|++||+.
T Consensus 828 ~~~~~~~~--~~~~~~~v~~~~~sp~~-------~~l~~~~~dg~v~vwd~~ 870 (1249)
T 3sfz_A 828 TSGLLAEI--HTGHHSTIQYCDFSPYD-------HLAVIALSQYCVELWNID 870 (1249)
T ss_dssp TCCEEEEE--ECSSSSCCCEEEECSST-------TEEEEECSSSCEEEEETT
T ss_pred CCCceeEE--cCCCCCceEEEEEcCCC-------CEEEEEeCCCeEEEEEcC
Confidence 00011111 22688899999999999 899999999999999974
No 107
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.1e-31 Score=222.33 Aligned_cols=214 Identities=11% Similarity=0.108 Sum_probs=150.1
Q ss_pred EeccCCCceEEEEEcC--------CCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCC-CEEEEE
Q 037555 51 KLYGHGNELFSLCCDH--------QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDD-NLLLSV 121 (298)
Q Consensus 51 ~~~~h~~~v~~~~~s~--------~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~ 121 (298)
.+.+|.+.|++++|+| ++++||+++ .|++|+|||+.++..+..+..|...|.+++|+|++ ++|+++
T Consensus 131 ~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s-----~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~ 205 (393)
T 4gq1_A 131 GKSGHHNFVNDIDIADVYSADNRLAEQVIASVG-----DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVG 205 (393)
T ss_dssp TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE-----TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEE
T ss_pred ccCCCCCceEEEEEccccccccCCCCCEEEEEE-----CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEec
Confidence 3679999999999998 789999995 49999999998888887788899999999999987 489999
Q ss_pred eCCCeEEEEEeccCCCCccc------------------eeeeEEeeccCCceEEEEEc-cCCCEEEEeeCCCeEEEEEcc
Q 037555 122 SRDRQFSVFAIQRTGTGEID------------------YQLIARQEAHKRIIWSCSWN-PFGHEFATGSRDKTVKIWAVE 182 (298)
Q Consensus 122 ~~dg~i~iwd~~~~~~~~~~------------------~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~~wd~~ 182 (298)
+.|++|++||+......... .........|...+.++.|. |+++.|++++.|+.+++||+.
T Consensus 206 ~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~ 285 (393)
T 4gq1_A 206 ERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLF 285 (393)
T ss_dssp ETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-
T ss_pred CCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECc
Confidence 99999999999865421110 00111224577888999987 799999999999999999998
Q ss_pred CCcceeeeeecCCCCCceEEEEEeeccc---------------cCCccEEEEeecCCcEEEEEeeecccccccCCCCCCc
Q 037555 183 NKSSVKQILALPPFNSSVTALSWVGLDR---------------QKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTA 247 (298)
Q Consensus 183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~---------------~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~ 247 (298)
..+... .+..+...+..+.+.|+.. ..++.++++|+.||.|++||+.++
T Consensus 286 ~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~------------- 349 (393)
T 4gq1_A 286 ANNDYN---EISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK------------- 349 (393)
T ss_dssp ---------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT-------------
T ss_pred cCCCCc---eEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC-------------
Confidence 776554 3333333333333333211 112357788889999999999876
Q ss_pred ceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 248 NIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 248 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
.....+ ..|..+|.+++|+|++ ++||+++.|| +.+|++
T Consensus 350 ~~~~~~---~~~~~~V~svafspdG-------~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 350 DSNSIP---IQLGMPIVDFCWHQDG-------SHLAIATEGS-VLLTRL 387 (393)
T ss_dssp TCCEEE---EECSSCEEEEEECTTS-------SEEEEEESSE-EEEEEE
T ss_pred cEEEEe---cCCCCcEEEEEEcCCC-------CEEEEEeCCC-eEEEEE
Confidence 333332 3478899999999999 8999998776 555554
No 108
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.98 E-value=1.5e-29 Score=212.42 Aligned_cols=224 Identities=17% Similarity=0.371 Sum_probs=187.5
Q ss_pred cCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEE
Q 037555 21 ESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWE 89 (298)
Q Consensus 21 ~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~ 89 (298)
.+|...|.++.+. +..++++ .+|+ ....+.+|...|.+++| ++++|++|+ .||.|++||
T Consensus 130 ~~~~~~v~~~~~d---~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~-----~dg~i~vwd 199 (435)
T 1p22_A 130 SETSKGVYCLQYD---DQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGS-----SDSTVRVWD 199 (435)
T ss_dssp CSSCCCEEEEECC---SSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEE-----TTSCEEEEE
T ss_pred cCCCCcEEEEEEC---CCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEc-----CCCeEEEEE
Confidence 4566678777763 5555554 3453 56788899999999999 788999995 499999999
Q ss_pred cCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEE
Q 037555 90 VGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFAT 169 (298)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 169 (298)
+.+++.+..+.+|...|.+++|+ +..+++++.||.|++||+..... ......+.+|...|.+++| +++++++
T Consensus 200 ~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~----~~~~~~~~~~~~~v~~~~~--~~~~l~s 271 (435)
T 1p22_A 200 VNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTD----ITLRRVLVGHRAAVNVVDF--DDKYIVS 271 (435)
T ss_dssp SSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSC----CEEEEEECCCSSCEEEEEE--ETTEEEE
T ss_pred CCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCC----ceeeeEecCCCCcEEEEEe--CCCEEEE
Confidence 99999999999999999999996 45999999999999999987432 2334667789999999999 6889999
Q ss_pred eeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcce
Q 037555 170 GSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANI 249 (298)
Q Consensus 170 ~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 249 (298)
++.||.|++||+++++.+. .+..|...|.++.+++ .++++|+.||.|++||++++ .+
T Consensus 272 ~~~dg~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~-------~~l~~g~~dg~i~iwd~~~~-------------~~ 328 (435)
T 1p22_A 272 ASGDRTIKVWNTSTCEFVR---TLNGHKRGIACLQYRD-------RLVVSGSSDNTIRLWDIECG-------------AC 328 (435)
T ss_dssp EETTSEEEEEETTTCCEEE---EEECCSSCEEEEEEET-------TEEEEEETTSCEEEEETTTC-------------CE
T ss_pred EeCCCeEEEEECCcCcEEE---EEcCCCCcEEEEEeCC-------CEEEEEeCCCeEEEEECCCC-------------CE
Confidence 9999999999999988777 5567889999999953 68999999999999999876 55
Q ss_pred eeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 250 IIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 250 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+..+ .+|...|.+++| ++ .+|++++.||.|++||++
T Consensus 329 ~~~~---~~h~~~v~~~~~--~~-------~~l~sg~~dg~i~vwd~~ 364 (435)
T 1p22_A 329 LRVL---EGHEELVRCIRF--DN-------KRIVSGAYDGKIKVWDLV 364 (435)
T ss_dssp EEEE---CCCSSCEEEEEC--CS-------SEEEEEETTSCEEEEEHH
T ss_pred EEEE---eCCcCcEEEEEe--cC-------CEEEEEeCCCcEEEEECC
Confidence 5553 469999999999 55 799999999999999974
No 109
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.2e-30 Score=217.34 Aligned_cols=203 Identities=14% Similarity=0.144 Sum_probs=165.6
Q ss_pred CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce---eeecccc-------------------------------
Q 037555 56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK---AMGRLQS------------------------------- 101 (298)
Q Consensus 56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~---~~~~~~~------------------------------- 101 (298)
..++.+++|+|+|++|++++ ++.|++||+.+++ .+..+..
T Consensus 4 ~~p~~~v~~s~dg~~l~~~~------~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAII------KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLK 77 (450)
T ss_dssp ECCCCEEEECSSSSEEEEEE------TTEEEEEEEETTTEEEEEEEEECCC-----------------------------
T ss_pred cccEEEEEecCCCCEEEEEe------CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccc
Confidence 35789999999999777764 6789999998887 5444432
Q ss_pred -----------------------ccccEEEEEEcCCCCEE-EEEeCCCeEEEEEeccCCCCccceeeeEEee--ccCCce
Q 037555 102 -----------------------HSLTVTQIRFSHDDNLL-LSVSRDRQFSVFAIQRTGTGEIDYQLIARQE--AHKRII 155 (298)
Q Consensus 102 -----------------------~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~v 155 (298)
|...|.+++|+|++++| ++++.||.|++||+.... ...+..+. .|...|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~-----~~~~~~~~~~~~~~~v 152 (450)
T 2vdu_B 78 SNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTS-----KNVLKLRKRFCFSKRP 152 (450)
T ss_dssp ----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSS-----SSCEEEEEEEECSSCE
T ss_pred cCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCC-----CceeeeeecccCCCCc
Confidence 33369999999999986 889999999999998211 23344443 567889
Q ss_pred EEEEEccCCCEEEEeeCCCeEEEEEccCCccee-eeeecCCCCCceEEEEEeec---cccCCccEEEEeecCCcEEEEEe
Q 037555 156 WSCSWNPFGHEFATGSRDKTVKIWAVENKSSVK-QILALPPFNSSVTALSWVGL---DRQKNHGFLAVGMESGVIELWSI 231 (298)
Q Consensus 156 ~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~---~~~~~~~~l~~g~~dg~i~vwd~ 231 (298)
.+++|+|++++|++++.+|.|++|++.+..... ....+.+|...|++++|+|+ + .+|++|+.|+.|++||+
T Consensus 153 ~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-----~~l~s~~~d~~i~vwd~ 227 (450)
T 2vdu_B 153 NAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGH-----QFIITSDRDEHIKISHY 227 (450)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSC-----EEEEEEETTSCEEEEEE
T ss_pred eEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCC-----cEEEEEcCCCcEEEEEC
Confidence 999999999999999999999999998876543 22345568899999999998 7 79999999999999999
Q ss_pred eecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 232 SVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+++ ..+..+ +.+|...|.+++|+ ++ .+|++++.|+.|++||++
T Consensus 228 ~~~-------------~~~~~~--~~~h~~~v~~~~~s-d~-------~~l~s~~~d~~v~vwd~~ 270 (450)
T 2vdu_B 228 PQC-------------FIVDKW--LFGHKHFVSSICCG-KD-------YLLLSAGGDDKIFAWDWK 270 (450)
T ss_dssp SCT-------------TCEEEE--CCCCSSCEEEEEEC-ST-------TEEEEEESSSEEEEEETT
T ss_pred CCC-------------ceeeee--ecCCCCceEEEEEC-CC-------CEEEEEeCCCeEEEEECC
Confidence 876 444332 34799999999999 88 899999999999999975
No 110
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.98 E-value=5.3e-30 Score=208.13 Aligned_cols=240 Identities=13% Similarity=0.074 Sum_probs=196.3
Q ss_pred ccccceeeeecCc---ccccccCCCCCceeeeccCCCcc-ccccc------CCCC-----ceEEecc--CCCceEEEEEc
Q 037555 3 AATRETVERHGND---GLDTLESVPDAVPAVFTEPPIED-QLAWH------TLWP-----ESHKLYG--HGNELFSLCCD 65 (298)
Q Consensus 3 ~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~-~~~~~------~~~~-----~~~~~~~--h~~~v~~~~~s 65 (298)
++.++.++..+++ .+..+.+|...|.++.+.| .+. .++++ .+|+ ....+.+ |...|.+++|+
T Consensus 32 d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~ 110 (342)
T 1yfq_A 32 DGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFID-NTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKY 110 (342)
T ss_dssp TSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEE-SSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEE
T ss_pred CCeEEEEEeCCCCccccceeeeecCCceEEEEECC-CCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeC
Confidence 4567778888777 3566679999999999994 455 55554 3454 3567788 99999999999
Q ss_pred CCCCEEEeEeccCCCCceEEEEEEcCC---------ceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEecc-C
Q 037555 66 HQGKLVASSCKAQSTAAAEIWLWEVGS---------WKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQR-T 135 (298)
Q Consensus 66 ~~~~~l~~~~~~~~~~d~~i~vw~~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~ 135 (298)
| +.+|++++. |+.|++||+.+ ++++..+. |...|.+++|+|++ +++++.|+.|++||++. .
T Consensus 111 ~-~~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~ 181 (342)
T 1yfq_A 111 G-DDKLIAASW-----DGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCE 181 (342)
T ss_dssp T-TTEEEEEET-----TSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCT
T ss_pred C-CCEEEEEcC-----CCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccc
Confidence 9 999999954 89999999988 77777777 89999999999887 99999999999999986 3
Q ss_pred CCCccceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCC------cceeeeeecCCCC---------Cc
Q 037555 136 GTGEIDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENK------SSVKQILALPPFN---------SS 199 (298)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~------~~~~~~~~~~~~~---------~~ 199 (298)
. .........|...+.+++|+| ++++|++++.||.|++|+++.. +... .+..|. ..
T Consensus 182 ~-----~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 253 (342)
T 1yfq_A 182 D-----DNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF---AFRCHRLNLKDTNLAYP 253 (342)
T ss_dssp T-----CCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE---EEECCCCCTTCCSSCCC
T ss_pred c-----ccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce---eeeccccccccccccee
Confidence 3 122334456788999999999 9999999999999999999876 4444 333443 48
Q ss_pred eEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcc-cceEEEEEeecCCCCCCCc
Q 037555 200 VTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACH-VAAVNRMAWKTHEKPKNSR 278 (298)
Q Consensus 200 v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~ 278 (298)
|.+++|+|++ .+|++++.||.|++||+.++ +.+.. +.+| ...|.+++ |++
T Consensus 254 i~~~~~s~~~-----~~l~~~~~dg~i~vwd~~~~-------------~~~~~---~~~~h~~~v~~~~--~~~------ 304 (342)
T 1yfq_A 254 VNSIEFSPRH-----KFLYTAGSDGIISCWNLQTR-------------KKIKN---FAKFNEDSVVKIA--CSD------ 304 (342)
T ss_dssp EEEEEECTTT-----CCEEEEETTSCEEEEETTTT-------------EEEEE---CCCCSSSEEEEEE--ECS------
T ss_pred EEEEEEcCCC-----CEEEEecCCceEEEEcCccH-------------hHhhh---hhcccCCCceEec--CCC------
Confidence 9999999998 79999999999999999876 44444 4567 99999999 888
Q ss_pred ceEEEeeeCCCc
Q 037555 279 TMQLASCGADNT 290 (298)
Q Consensus 279 ~~~l~s~~~d~~ 290 (298)
.+|++++.||.
T Consensus 305 -~~l~s~s~Dg~ 315 (342)
T 1yfq_A 305 -NILCLATSDDT 315 (342)
T ss_dssp -SEEEEEEECTH
T ss_pred -CeEEEEecCCc
Confidence 89999999998
No 111
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=9.7e-30 Score=207.83 Aligned_cols=266 Identities=15% Similarity=0.143 Sum_probs=176.9
Q ss_pred eecCcccccccCCCCCceeeeccCCCccccccc-----CCCCc---eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCc
Q 037555 11 RHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH-----TLWPE---SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAA 82 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d 82 (298)
..+.+.+.....|.+.|.++.|+ |++..++.+ ++|+. ......+...+..+++.++++.++..+ +.|
T Consensus 6 ~~~~~~~~~~~~h~~~V~~v~fs-~dg~~la~g~~~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~d 80 (355)
T 3vu4_A 6 MITRNPIVPENHVSNPVTDYEFN-QDQSCLILSTLKSFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVT----GVK 80 (355)
T ss_dssp -------------CCCCCEEEEC-TTSSEEEEECSSEEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEEC----SST
T ss_pred ccccCCccccccCCCceEEEEEC-CCCCEEEEEcCCEEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEE----CCc
Confidence 34556677789999999999999 566666665 35531 122222333588889999888886544 347
Q ss_pred eEEEEEEcCCceeeeccccccccEEEEEEcCCC-----------------------------------CEEEE--EeCCC
Q 037555 83 AEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDD-----------------------------------NLLLS--VSRDR 125 (298)
Q Consensus 83 ~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------------------------~~l~~--~~~dg 125 (298)
+.|++||..+++.+..+. +...|.+++|+++. .+++. ++.||
T Consensus 81 ~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g 159 (355)
T 3vu4_A 81 EVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLG 159 (355)
T ss_dssp TEEEEEETTTTEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTT
T ss_pred cEEEEEECCCCcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCc
Confidence 899999999999888776 66789999888753 12222 35666
Q ss_pred eEEEEEeccCCCCcc--------ceee-eEEeeccCCceEEEEEccCCCEEEEeeCCCe-EEEEEccCCcceeeeeecC-
Q 037555 126 QFSVFAIQRTGTGEI--------DYQL-IARQEAHKRIIWSCSWNPFGHEFATGSRDKT-VKIWAVENKSSVKQILALP- 194 (298)
Q Consensus 126 ~i~iwd~~~~~~~~~--------~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~- 194 (298)
.|++||+........ ...+ +..+.+|...|.+++|+|++++|++++.|++ |++||+++++.+. .+.
T Consensus 160 ~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~---~~~~ 236 (355)
T 3vu4_A 160 QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVR---EFRR 236 (355)
T ss_dssp CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEE---EEEC
T ss_pred EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE---EEEc
Confidence 777777664220000 0012 5677899999999999999999999999998 9999999988877 444
Q ss_pred C-CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCC-------CCcceeeeeccCCcccceEEEE
Q 037555 195 P-FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAP-------STANIIIRFDPFACHVAAVNRM 266 (298)
Q Consensus 195 ~-~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~ 266 (298)
+ |...|.+++|+|++ .+|++++.|+.|++||++............ ........+.....+......+
T Consensus 237 g~h~~~v~~~~~s~~~-----~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (355)
T 3vu4_A 237 GLDRADVVDMKWSTDG-----SKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKI 311 (355)
T ss_dssp TTCCSCEEEEEECTTS-----CEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEE
T ss_pred CCCCCcEEEEEECCCC-----CEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEE
Confidence 3 88999999999998 799999999999999997653221100000 0000001111011223344679
Q ss_pred EeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 267 AWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 267 ~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+|++++ .+|++++.||.+++|++.
T Consensus 312 a~~~d~-------~~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 312 AWISES-------SLVVVWPHTRMIETFKVV 335 (355)
T ss_dssp EESSSS-------EEEEEETTTTEEEEEEEE
T ss_pred EEeCCC-------CEEEEEeCCCeEEEEEEE
Confidence 999999 899999999999999874
No 112
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.6e-30 Score=209.54 Aligned_cols=198 Identities=6% Similarity=0.064 Sum_probs=153.8
Q ss_pred CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcC---------Cceeeeccc-cccccEEEEEEcC--CCCEEEEEeC
Q 037555 56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVG---------SWKAMGRLQ-SHSLTVTQIRFSH--DDNLLLSVSR 123 (298)
Q Consensus 56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~---------~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~ 123 (298)
...|.++.|+|+ +++++ .|+.|++|+.. +++.+..+. .|...|.+++|+| +++++++++.
T Consensus 76 ~~~v~~~~~~~~---~~s~s-----~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~ 147 (343)
T 3lrv_A 76 TPNPRTGGEHPA---IISRG-----PCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADN 147 (343)
T ss_dssp EECCCTTCCCCS---EEEEC-----STTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEET
T ss_pred cCCceeeeeCCc---eEEec-----CCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeC
Confidence 466888888887 88884 58999999765 333333333 5668899999999 9999999999
Q ss_pred CCeEEEEEeccCCCCccceeeeEEe-eccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcce-eeeeecCC-CCCce
Q 037555 124 DRQFSVFAIQRTGTGEIDYQLIARQ-EAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSV-KQILALPP-FNSSV 200 (298)
Q Consensus 124 dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~-~~~~v 200 (298)
||.|++||++.. ...... ..+...+.+++|+|++.+|++|+.||.|++||+++++.. . .+.. |..+|
T Consensus 148 dg~i~~wd~~~~-------~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~---~~~~~h~~~v 217 (343)
T 3lrv_A 148 RGTIGFQSYEDD-------SQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASS---RFPVDEEAKI 217 (343)
T ss_dssp TCCEEEEESSSS-------CEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCE---ECCCCTTSCE
T ss_pred CCcEEEEECCCC-------cEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCcc---EEeccCCCCE
Confidence 999999999873 333333 345568999999999999999999999999999998876 4 4555 89999
Q ss_pred EEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEE--EEEeecCCCCCCCc
Q 037555 201 TALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVN--RMAWKTHEKPKNSR 278 (298)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~~ 278 (298)
++++|+|++ .+|++++ ++.|++||+++.. ....+..+..|...+. +++|+|++
T Consensus 218 ~~l~fs~~g-----~~l~s~~-~~~v~iwd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~g------ 272 (343)
T 3lrv_A 218 KEVKFADNG-----YWMVVEC-DQTVVCFDLRKDV-------------GTLAYPTYTIPEFKTGTVTYDIDDSG------ 272 (343)
T ss_dssp EEEEECTTS-----SEEEEEE-SSBEEEEETTSST-------------TCBSSCCCBC-----CCEEEEECTTS------
T ss_pred EEEEEeCCC-----CEEEEEe-CCeEEEEEcCCCC-------------cceeecccccccccccceEEEECCCC------
Confidence 999999998 7999999 4599999998763 2222222223444444 69999999
Q ss_pred ceEEEeeeC-CCcEEEeEec
Q 037555 279 TMQLASCGA-DNTVRVFQVN 297 (298)
Q Consensus 279 ~~~l~s~~~-d~~i~iw~~~ 297 (298)
.+|++++. |+.|++|++.
T Consensus 273 -~~l~~~s~~d~~i~v~~~~ 291 (343)
T 3lrv_A 273 -KNMIAYSNESNSLTIYKFD 291 (343)
T ss_dssp -SEEEEEETTTTEEEEEEEC
T ss_pred -CEEEEecCCCCcEEEEEEc
Confidence 89999888 9999999873
No 113
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.7e-29 Score=205.06 Aligned_cols=206 Identities=19% Similarity=0.294 Sum_probs=169.0
Q ss_pred ccccCCCCCceeeeccCCCccccccc------CCCC---------ceEEeccCCCceEEEEEcC--CCCEEEeEeccCCC
Q 037555 18 DTLESVPDAVPAVFTEPPIEDQLAWH------TLWP---------ESHKLYGHGNELFSLCCDH--QGKLVASSCKAQST 80 (298)
Q Consensus 18 ~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~---------~~~~~~~h~~~v~~~~~s~--~~~~l~~~~~~~~~ 80 (298)
..+.+|.+.|.++.|. |.+..++++ .+|+ ....+.+|...|++++|+| ++++|++++.
T Consensus 5 ~~~~gH~~~v~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~---- 79 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYD-FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASY---- 79 (351)
T ss_dssp CEECCCSSCEEEEEEC-SSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEET----
T ss_pred ccCcccccceeEEEEc-CCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcC----
Confidence 4567999999999999 466666665 3553 3566789999999999999 6999999954
Q ss_pred CceEEEEEEcCCc---------eeeeccccccccEEEEEEcCC--CCEEEEEeCCCeEEEEEeccCCCCcc---------
Q 037555 81 AAAEIWLWEVGSW---------KAMGRLQSHSLTVTQIRFSHD--DNLLLSVSRDRQFSVFAIQRTGTGEI--------- 140 (298)
Q Consensus 81 ~d~~i~vw~~~~~---------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~--------- 140 (298)
|+.|++||+.++ +.+..+..|...|.+++|+|+ +++|++++.||.|++||++.......
T Consensus 80 -dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 158 (351)
T 3f3f_A 80 -DKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKV 158 (351)
T ss_dssp -TSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEES
T ss_pred -CCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccc
Confidence 899999999876 556778889999999999999 99999999999999999876442110
Q ss_pred --------------------------------------------ceeeeEEeeccCCceEEEEEccCC----CEEEEeeC
Q 037555 141 --------------------------------------------DYQLIARQEAHKRIIWSCSWNPFG----HEFATGSR 172 (298)
Q Consensus 141 --------------------------------------------~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~ 172 (298)
.......+..|...|.+++|+|++ ++|++++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~ 238 (351)
T 3f3f_A 159 LSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK 238 (351)
T ss_dssp CSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEET
T ss_pred cccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcC
Confidence 011245566789999999999998 89999999
Q ss_pred CCeEEEEEccCCcc-------------------------------------------eeeeeecCCCCCceEEEEEeecc
Q 037555 173 DKTVKIWAVENKSS-------------------------------------------VKQILALPPFNSSVTALSWVGLD 209 (298)
Q Consensus 173 dg~i~~wd~~~~~~-------------------------------------------~~~~~~~~~~~~~v~~~~~~~~~ 209 (298)
||.|++||++.... ...+..+.+|...|++++|+|++
T Consensus 239 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~ 318 (351)
T 3f3f_A 239 DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG 318 (351)
T ss_dssp TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSS
T ss_pred CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCC
Confidence 99999999986421 12333567789999999999998
Q ss_pred ccCCccEEEEeecCCcEEEEEeeec
Q 037555 210 RQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 210 ~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
.+|++++.||.|++|++.++
T Consensus 319 -----~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 319 -----TILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp -----CCEEEEETTSCEEEEEECTT
T ss_pred -----CEEEEecCCCcEEEEecCcC
Confidence 79999999999999999876
No 114
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.2e-29 Score=229.63 Aligned_cols=247 Identities=12% Similarity=0.095 Sum_probs=184.3
Q ss_pred ccCCCCCceeeeccCCCccccccc------CCCCc----eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEE
Q 037555 20 LESVPDAVPAVFTEPPIEDQLAWH------TLWPE----SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWE 89 (298)
Q Consensus 20 ~~~~~~~v~~~~~~~~~~~~~~~~------~~~~~----~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~ 89 (298)
..+|.+.|.+++|+ |.+..++++ ++|+. ......|..+|.+++|+| +++|++++ .|+.|++||
T Consensus 13 ~~gh~~~V~~lafs-pdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s-----~D~~v~lWd 85 (902)
T 2oaj_A 13 KYGMSSKPIAAAFD-FTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVIN-----AKDTVYVLS 85 (902)
T ss_dssp EEECSSCEEEEEEE-TTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEE-----TTCEEEEEE
T ss_pred ccCCCCCcEEEEEC-CCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEE-----CcCeEEEEE
Confidence 34889999999999 566777766 45642 223345888999999999 88999995 499999999
Q ss_pred cCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeee-------EEeeccCCceEEEEEcc
Q 037555 90 VGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLI-------ARQEAHKRIIWSCSWNP 162 (298)
Q Consensus 90 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~v~~~~~~~ 162 (298)
+.+++.+..+. |...|++++|+|++++|++|+.||.|++||++...... . .+ ..+..|...|.+++|+|
T Consensus 86 ~~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~--~-~i~~~~~~~~~~~~h~~~V~sl~~sp 161 (902)
T 2oaj_A 86 LYSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSS--F-KLDNLQKSSFFPAARLSPIVSIQWNP 161 (902)
T ss_dssp TTTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEE--E-EECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred CCCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccc--c-eeccccccccccccCCCCeEEEEEcc
Confidence 99998888876 77899999999999999999999999999998632100 0 00 23356889999999999
Q ss_pred C-CCEEEEeeCCCeEEEEEccCCcceeeeeec---------------CCCCCceEEEEEeeccccCCccEEEEeecCCcE
Q 037555 163 F-GHEFATGSRDKTVKIWAVENKSSVKQILAL---------------PPFNSSVTALSWVGLDRQKNHGFLAVGMESGVI 226 (298)
Q Consensus 163 ~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i 226 (298)
+ +..|++|+.||.| +||+++.+....+... ..|...|.+++|+|++ .+|++|+.|+.|
T Consensus 162 ~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-----~~lasgs~Dg~i 235 (902)
T 2oaj_A 162 RDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-----LHIITIHEDNSL 235 (902)
T ss_dssp TEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-----SEEEEEETTCCE
T ss_pred CCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC-----CEEEEEECCCeE
Confidence 5 5789999999999 9999988776533211 1235779999999998 799999999999
Q ss_pred EEEEeeecccccccCCCCCCcceeeeeccCC-------------cccceEEEEEeecCCCCCCCcceEEEeeeCC-----
Q 037555 227 ELWSISVNRTNDVSTPAPSTANIIIRFDPFA-------------CHVAAVNRMAWKTHEKPKNSRTMQLASCGAD----- 288 (298)
Q Consensus 227 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d----- 288 (298)
++||+++++.... ..+.... .|...|.+++|++.... +++.+|++++.|
T Consensus 236 ~lWd~~~g~~~~~-----------r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~p--d~~~ll~sg~~~~~~~~ 302 (902)
T 2oaj_A 236 VFWDANSGHMIMA-----------RTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNP--EYTSLLISHKSISRGDN 302 (902)
T ss_dssp EEEETTTCCEEEE-----------ECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSST--TEEEEEEEEECSTTSSC
T ss_pred EEEECCCCcEEEE-----------EeecccccCCCCCcCCCCCccccCCeeEEEEEecCCC--CCCEEEEeCCCCCCCCC
Confidence 9999987632110 0111111 24568999999753200 011577777766
Q ss_pred CcEEEeEe
Q 037555 289 NTVRVFQV 296 (298)
Q Consensus 289 ~~i~iw~~ 296 (298)
..+++|++
T Consensus 303 ~~v~~~~~ 310 (902)
T 2oaj_A 303 QSLTMIDL 310 (902)
T ss_dssp CCEEEEEE
T ss_pred ceEEEEec
Confidence 37888884
No 115
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=3.3e-29 Score=205.38 Aligned_cols=194 Identities=15% Similarity=0.150 Sum_probs=154.9
Q ss_pred CCCCCceeeeccCCCccccccc--------CCCC-----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEE
Q 037555 22 SVPDAVPAVFTEPPIEDQLAWH--------TLWP-----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLW 88 (298)
Q Consensus 22 ~~~~~v~~~~~~~~~~~~~~~~--------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw 88 (298)
.+.+.+..++|+ |++..++.+ ++|+ ++..+ .|...|.+++|+|+|++|++++ ++.+.+|
T Consensus 131 ~~~~~~~~v~fS-pDg~~la~as~~~d~~i~iwd~~~~~~~~~~-~~~~~V~~v~fspdg~~l~s~s------~~~~~~~ 202 (365)
T 4h5i_A 131 NADDYTKLVYIS-REGTVAAIASSKVPAIMRIIDPSDLTEKFEI-ETRGEVKDLHFSTDGKVVAYIT------GSSLEVI 202 (365)
T ss_dssp CTTCCEEEEEEC-TTSSCEEEEESCSSCEEEEEETTTTEEEEEE-ECSSCCCEEEECTTSSEEEEEC------SSCEEEE
T ss_pred CcccCEEEEEEc-CCCCEEEEEECCCCCEEEEeECCCCcEEEEe-CCCCceEEEEEccCCceEEecc------ceeEEEE
Confidence 344557788898 566665422 4664 24444 5888999999999999999995 4456777
Q ss_pred EcCCceeee--ccccccccEEEEEEcCCCCEEEEEeCCC----eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc
Q 037555 89 EVGSWKAMG--RLQSHSLTVTQIRFSHDDNLLLSVSRDR----QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP 162 (298)
Q Consensus 89 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 162 (298)
+..+++.+. ....|...|.+++|+|+++++++++.|+ .+++|++...... ......+..|...|++++|+|
T Consensus 203 ~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~V~~~~~Sp 279 (365)
T 4h5i_A 203 STVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTS---VLRSKQVTNRFKGITSMDVDM 279 (365)
T ss_dssp ETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEE---EEEEEEEESSCSCEEEEEECT
T ss_pred EeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceec---ceeeeeecCCCCCeEeEEECC
Confidence 776666543 3557899999999999999999999887 6888888753210 223456678899999999999
Q ss_pred CCCEEEEeeCCCeEEEEEccCCcceeeeee-cCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555 163 FGHEFATGSRDKTVKIWAVENKSSVKQILA-LPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 163 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
++++||+|+.|+.|++||+++++.+. . +.+|...|++++|+|++ .+|++|+.|++|+||++...
T Consensus 280 dg~~lasgs~D~~V~iwd~~~~~~~~---~~~~gH~~~V~~v~fSpdg-----~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 280 KGELAVLASNDNSIALVKLKDLSMSK---IFKQAHSFAITEVTISPDS-----TYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TSCEEEEEETTSCEEEEETTTTEEEE---EETTSSSSCEEEEEECTTS-----CEEEEEETTSEEEEEECCTT
T ss_pred CCCceEEEcCCCEEEEEECCCCcEEE---EecCcccCCEEEEEECCCC-----CEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999999999988766 4 46899999999999999 79999999999999999754
No 116
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=3.8e-29 Score=204.29 Aligned_cols=208 Identities=12% Similarity=0.098 Sum_probs=153.8
Q ss_pred ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEE-EEEeCCCe
Q 037555 48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLL-LSVSRDRQ 126 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~ 126 (298)
.+..+.+|...|++++|+|+|++|++|+ .++ +++|++.+++...... ...+..+++.++++.+ ++++.|+.
T Consensus 11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~-----~~~-~~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (355)
T 3vu4_A 11 PIVPENHVSNPVTDYEFNQDQSCLILST-----LKS-FEIYNVHPVAHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEV 82 (355)
T ss_dssp --------CCCCCEEEECTTSSEEEEEC-----SSE-EEEEEETTEEEEEEEE--CSCCCEEEECTTSSEEEEECSSTTE
T ss_pred CccccccCCCceEEEEECCCCCEEEEEc-----CCE-EEEEecCCcceeeeee--cCCeEEEEEcCCCCEEEEEECCccE
Confidence 3445678999999999999999999994 354 7899998877654433 2247788898888877 56778899
Q ss_pred EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCC-----------------------------------CEEEE--
Q 037555 127 FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG-----------------------------------HEFAT-- 169 (298)
Q Consensus 127 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------------------------~~l~~-- 169 (298)
|++||..+ ...+..+. +...|.+++|+++. .++++
T Consensus 83 v~iWd~~~-------~~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~s 154 (355)
T 3vu4_A 83 VHIWDDVK-------KQDVSRIK-VDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSN 154 (355)
T ss_dssp EEEEETTT-------TEEEEEEE-CSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEE
T ss_pred EEEEECCC-------CcEEEEEE-CCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeC
Confidence 99999987 44455544 55677777776542 23444
Q ss_pred eeCCCeEEEEEccCCcce------------ee-eeecCCCCCceEEEEEeeccccCCccEEEEeecCCc-EEEEEeeecc
Q 037555 170 GSRDKTVKIWAVENKSSV------------KQ-ILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGV-IELWSISVNR 235 (298)
Q Consensus 170 ~~~dg~i~~wd~~~~~~~------------~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~-i~vwd~~~~~ 235 (298)
|+.||.|++||++++... .+ +..+.+|...|++++|+|++ .+|++|+.|+. |++||++++
T Consensus 155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-----~~l~s~s~d~~~v~iwd~~~~- 228 (355)
T 3vu4_A 155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-----DMVATCSQDGTIIRVFKTEDG- 228 (355)
T ss_dssp SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS-----SEEEEEETTCSEEEEEETTTC-
T ss_pred CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC-----CEEEEEeCCCCEEEEEECCCC-
Confidence 577888999998865410 01 23677899999999999998 79999999998 999999877
Q ss_pred cccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 236 TNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+++..+.. ..|...|.+++|+|++ .+|++++.|++|++||++
T Consensus 229 ------------~~~~~~~~-g~h~~~v~~~~~s~~~-------~~l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 229 ------------VLVREFRR-GLDRADVVDMKWSTDG-------SKLAVVSDKWTLHVFEIF 270 (355)
T ss_dssp ------------CEEEEEEC-TTCCSCEEEEEECTTS-------CEEEEEETTCEEEEEESS
T ss_pred ------------cEEEEEEc-CCCCCcEEEEEECCCC-------CEEEEEECCCEEEEEEcc
Confidence 55555431 1288999999999999 899999999999999974
No 117
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=8.2e-28 Score=200.90 Aligned_cols=206 Identities=21% Similarity=0.399 Sum_probs=171.9
Q ss_pred EeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEE
Q 037555 51 KLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVF 130 (298)
Q Consensus 51 ~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 130 (298)
.+.+|...|++++|+|+|++|++|+. |+.|++||+.+++.+..+.+|...+.++.+ ++.++++++.|+.+++|
T Consensus 142 ~~~~~~~~V~sv~fspdg~~lasgs~-----Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~ 214 (420)
T 4gga_A 142 QMEQPGEYISSVAWIKEGNYLAVGTS-----SAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHH 214 (420)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEET-----TSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred EecCCCCcEEEEEECCCCCEEEEEEC-----CCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEe
Confidence 34578889999999999999999954 999999999999999999999999999887 46799999999999999
Q ss_pred EeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCccee-eeeecCCCCCceEEEEEeecc
Q 037555 131 AIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVK-QILALPPFNSSVTALSWVGLD 209 (298)
Q Consensus 131 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~ 209 (298)
|.... ...+..+..|...+..+.|+|+++++++++.|+.+++||...++... .+.....+...|.+++|+|.+
T Consensus 215 d~~~~------~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~ 288 (420)
T 4gga_A 215 DVRVA------EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 288 (420)
T ss_dssp ETTSS------SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTC
T ss_pred eeccc------ceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCc
Confidence 98764 34567788999999999999999999999999999999998765322 222455688999999999987
Q ss_pred ccCCccEEEEe--ecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeee-
Q 037555 210 RQKNHGFLAVG--MESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCG- 286 (298)
Q Consensus 210 ~~~~~~~l~~g--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~- 286 (298)
. .+++++ +.|+.|++||+.++ .+...+. +...+.++.|+|++ ..|++++
T Consensus 289 ~----~~la~~~gs~D~~I~iwd~~t~-------------~~~~~~~----~~~~v~~~~~~~~~-------~~lv~~sg 340 (420)
T 4gga_A 289 S----NVLATGGGTSDRHIRIWNVCSG-------------ACLSAVD----AHSQVCSILWSPHY-------KELISGHG 340 (420)
T ss_dssp T----TEEEEEECTTTCEEEEEETTTT-------------EEEEEEE----CSSCEEEEEEETTT-------TEEEEEEC
T ss_pred c----cEEEEEeecCCCEEEEEeCCcc-------------ccceeec----cccceeeeeecCCC-------CeEEEEEe
Confidence 4 666654 57999999999877 5555543 45678999999998 5666544
Q ss_pred -CCCcEEEeEec
Q 037555 287 -ADNTVRVFQVN 297 (298)
Q Consensus 287 -~d~~i~iw~~~ 297 (298)
.|+.|+|||++
T Consensus 341 ~~d~~I~iwd~~ 352 (420)
T 4gga_A 341 FAQNQLVIWKYP 352 (420)
T ss_dssp TTTCCEEEEETT
T ss_pred cCCCEEEEEECC
Confidence 79999999974
No 118
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.2e-29 Score=207.08 Aligned_cols=223 Identities=10% Similarity=0.070 Sum_probs=164.0
Q ss_pred cCCCCCceeeeccCCCcccccccCCCCce------EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce
Q 037555 21 ESVPDAVPAVFTEPPIEDQLAWHTLWPES------HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK 94 (298)
Q Consensus 21 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~ 94 (298)
+.....|..+.++ |++..++++..-..+ +.+.+|...|.+++|+|+| . ++.+.+|+.+ +.
T Consensus 12 ~~~~~~v~sv~~S-pDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg-----~-------~~~~~~~~~~-~~ 77 (588)
T 2j04_A 12 KEFEDWKNNLTWA-RDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLE-----F-------ENKLDFELAQ-QN 77 (588)
T ss_dssp CCCSSSSCCEEEC-TTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCC-----C-------CCTTTTSCCC-SS
T ss_pred hHhhccEEEEEEC-CCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCC-----C-------cceEEEEeCC-Cc
Confidence 3445677888888 677777777543222 2336788888888888877 1 4445555433 22
Q ss_pred eeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCC-----ceEEEEEccCCCEEEE
Q 037555 95 AMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKR-----IIWSCSWNPFGHEFAT 169 (298)
Q Consensus 95 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~~ 169 (298)
....+ .|...|.+++|+|+|++||+++.||.|++||... .+..+. |.. .|.+++|+|+|++|++
T Consensus 78 ~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~---------~l~~l~-~~~~~~~~sv~svafSPDG~~LAs 146 (588)
T 2j04_A 78 GLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK---------MLTNLD-SKGNLSSRTYHCFEWNPIESSIVV 146 (588)
T ss_dssp CSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE---------EEEECC-CSSCSTTTCEEEEEECSSSSCEEE
T ss_pred eEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc---------eeeecc-CCCccccccEEEEEEcCCCCEEEE
Confidence 22333 4688999999999999999999999999999542 444555 554 4999999999999999
Q ss_pred eeCCCeEEEEEccCCccee----eeeec----CCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccC
Q 037555 170 GSRDKTVKIWAVENKSSVK----QILAL----PPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVST 241 (298)
Q Consensus 170 ~~~dg~i~~wd~~~~~~~~----~~~~~----~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 241 (298)
|+.||+|++||+.++.... .+..+ .+|...|.+++|+|+ . +++++.|+.|++|++......
T Consensus 147 gs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd------g-Laass~D~tVrlWd~~~~~~~---- 215 (588)
T 2j04_A 147 GNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED------V-LVAALSNNSVFSMTVSASSHQ---- 215 (588)
T ss_dssp EETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT------E-EEEEETTCCEEEECCCSSSSC----
T ss_pred EcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC------c-EEEEeCCCeEEEEECCCCccc----
Confidence 9999999999999875300 12233 567889999999996 4 888899999999999775311
Q ss_pred CCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 242 PAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.....+. .+|...|.+++|+ + ..|++++ +++|++||+.
T Consensus 216 ------~~~~tL~--~~h~~~V~svaFs--g-------~~LASa~-~~tIkLWd~~ 253 (588)
T 2j04_A 216 ------PVSRMIQ--NASRRKITDLKIV--D-------YKVVLTC-PGYVHKIDLK 253 (588)
T ss_dssp ------CCEEEEE--CCCSSCCCCEEEE--T-------TEEEEEC-SSEEEEEETT
T ss_pred ------cceeeec--ccccCcEEEEEEE--C-------CEEEEEe-CCeEEEEECC
Confidence 0112221 2588899999999 5 5888887 6999999964
No 119
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.3e-28 Score=198.90 Aligned_cols=241 Identities=9% Similarity=0.033 Sum_probs=172.7
Q ss_pred ccccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC--------------ceEEe-ccCCCceEE
Q 037555 3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP--------------ESHKL-YGHGNELFS 61 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~--------------~~~~~-~~h~~~v~~ 61 (298)
++.++.++..+++.+..+. ...|..+.+.|. ++++ .+|. .+..+ .+|.++|.+
T Consensus 57 Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 130 (343)
T 3lrv_A 57 DGALHFTQLKDSKTITTIT--TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIY 130 (343)
T ss_dssp TTEEEEEEESSSSCEEEEE--EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEE
T ss_pred CCcEEEEECCCCcEEEEEe--cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEE
Confidence 4567778888887776665 344555444432 2222 2331 12233 367789999
Q ss_pred EEEcC--CCCEEEeEeccCCCCceEEEEEEcCCceeeeccc-cccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCC
Q 037555 62 LCCDH--QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ-SHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTG 138 (298)
Q Consensus 62 ~~~s~--~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 138 (298)
++|+| ++++|++++. |+.|++||+++++.+.... .|...|.+++|+|++.+|++|+.||.|++||++...
T Consensus 131 ~~~~~~~~~~~l~s~s~-----dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~-- 203 (343)
T 3lrv_A 131 MYGHNEVNTEYFIWADN-----RGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPD-- 203 (343)
T ss_dssp EECCC---CCEEEEEET-----TCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTT--
T ss_pred EEcCCCCCCCEEEEEeC-----CCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCC--
Confidence 99999 9999999954 9999999999988866553 356689999999999999999999999999998743
Q ss_pred ccceeee-EEeec-cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceE--EEEEeeccccCCc
Q 037555 139 EIDYQLI-ARQEA-HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVT--ALSWVGLDRQKNH 214 (298)
Q Consensus 139 ~~~~~~~-~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~~~~ 214 (298)
.. ..+.. |..+|.+++|+|++.+|++++ |+.|++||+++.+....+..+..+...+. +++|+|++
T Consensus 204 -----~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----- 272 (343)
T 3lrv_A 204 -----QASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSG----- 272 (343)
T ss_dssp -----SCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTS-----
T ss_pred -----CCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCC-----
Confidence 23 45566 999999999999999999999 45999999999877653333222333343 69999998
Q ss_pred cEEEEeec-CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeec---CCCCCCCcceEEEeeeCCCc
Q 037555 215 GFLAVGME-SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKT---HEKPKNSRTMQLASCGADNT 290 (298)
Q Consensus 215 ~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~l~s~~~d~~ 290 (298)
.+|++++. |+.|++|++...... .. ..++..+.|.+ +. ..|++++.|+.
T Consensus 273 ~~l~~~s~~d~~i~v~~~~~~~~~-------------~~-------~~~~~~~~~~~~~~~~-------~~l~~~~~d~~ 325 (343)
T 3lrv_A 273 KNMIAYSNESNSLTIYKFDKKTKN-------------WT-------KDEESALCLQSDTADF-------TDMDVVCGDGG 325 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTTCS-------------EE-------EEEEEECCC----CCC-------CEEEEEEETTE
T ss_pred CEEEEecCCCCcEEEEEEcccccc-------------eE-------ecCceeEecCcccccc-------ceeEEEecCCc
Confidence 79999888 999999999754211 11 14566667776 44 56777777777
Q ss_pred EEEe
Q 037555 291 VRVF 294 (298)
Q Consensus 291 i~iw 294 (298)
++++
T Consensus 326 ~~~~ 329 (343)
T 3lrv_A 326 IAAI 329 (343)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 7665
No 120
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=9.7e-28 Score=189.28 Aligned_cols=192 Identities=14% Similarity=0.115 Sum_probs=148.1
Q ss_pred eeeeecCccccc-ccCCCCCceeeeccCCCcccccccCCCCceEEeccCCCceEEEEEcC---CCCEEEeEeccCCCCce
Q 037555 8 TVERHGNDGLDT-LESVPDAVPAVFTEPPIEDQLAWHTLWPESHKLYGHGNELFSLCCDH---QGKLVASSCKAQSTAAA 83 (298)
Q Consensus 8 ~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~---~~~~l~~~~~~~~~~d~ 83 (298)
.+...+|+.+.+ ..+|...|....+.| .++ .+..+.+|...++.++|++ ++.+|++++ .|+
T Consensus 139 v~~l~~g~lv~ss~~g~d~~V~~~~~s~-dG~---------~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS-----~D~ 203 (356)
T 2w18_A 139 VLGLTKRRLVSSSGTLSDQQVEVMTFAE-DGG---------GKENQFLMPPEETILTFAEVQGMQEALLGTT-----IMN 203 (356)
T ss_dssp EEEETTTEEEEEESSSTTCEEEEEEECT-TSC---------EEEEEEECCCSSCEEEEEEEETSTTEEEEEE-----TTS
T ss_pred EEecCCCcEEEecccCCCCcEEEEEECC-CCc---------eeeeeccCCCceeeEEeeccCCCCceEEEec-----CCC
Confidence 344556666666 578888998888873 343 4566778999999999999 779999995 499
Q ss_pred EEEEEEcCCceeeecccccc---ccEEEEEEcCCCCEE------------EEEeCCCeEEEEEeccCCCCccceeeeEEe
Q 037555 84 EIWLWEVGSWKAMGRLQSHS---LTVTQIRFSHDDNLL------------LSVSRDRQFSVFAIQRTGTGEIDYQLIARQ 148 (298)
Q Consensus 84 ~i~vw~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l------------~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 148 (298)
+|+|||+.+++.+.++.+|. ..+.+++|+|++.++ ++|+.|++|++||..+ ...+..+
T Consensus 204 TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t-------gk~l~v~ 276 (356)
T 2w18_A 204 NIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT-------TLSVGVM 276 (356)
T ss_dssp EEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT-------TEEEEEE
T ss_pred cEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC-------CEEEEEE
Confidence 99999999999999997643 467788999999876 5678899999999886 3333332
Q ss_pred -----eccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceE-EEEEeeccccCCccEEEEeec
Q 037555 149 -----EAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVT-ALSWVGLDRQKNHGFLAVGME 222 (298)
Q Consensus 149 -----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~l~~g~~ 222 (298)
.+|...+.+..+ ++.++++++.|++|++||+.+++.+. ++.+|...+. +++|+|++ .+|++|+.
T Consensus 277 ~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~---tL~gH~~~vvs~vafSPDG-----~~LaSGS~ 346 (356)
T 2w18_A 277 LYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTA---LLPPVSDQHWSFVKWSGTD-----SHLLAGQK 346 (356)
T ss_dssp EECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEE---EECCC--CCCCEEEECSSS-----SEEEEECT
T ss_pred EeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEE---EecCCCCCeEEEEEECCCC-----CEEEEEEC
Confidence 245554444444 37899999999999999999999887 6667776554 68999999 79999999
Q ss_pred CCcEEEEEe
Q 037555 223 SGVIELWSI 231 (298)
Q Consensus 223 dg~i~vwd~ 231 (298)
|++|+|||+
T Consensus 347 D~TIklWd~ 355 (356)
T 2w18_A 347 DGNIFVYHY 355 (356)
T ss_dssp TSCEEEEEE
T ss_pred CCcEEEecC
Confidence 999999996
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=2.1e-26 Score=190.47 Aligned_cols=246 Identities=12% Similarity=0.101 Sum_probs=189.5
Q ss_pred ccccceeeeecCcccccccCCCCCceeeeccCCCcccc-ccc------CCCC-----ceEEeccCCCceEEEEEcCCCCE
Q 037555 3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQL-AWH------TLWP-----ESHKLYGHGNELFSLCCDHQGKL 70 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~~~~ 70 (298)
++.++.++..+++.+..+..|.. +.++.+.| .+..+ +.. .+|+ .+..+..+ ..+.+++|+|++++
T Consensus 11 d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~-dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~-~~v~~~~~spdg~~ 87 (391)
T 1l0q_A 11 SDNISVIDVTSNKVTATIPVGSN-PMGAVISP-DGTKVYVANAHSNDVSIIDTATNNVIATVPAG-SSPQGVAVSPDGKQ 87 (391)
T ss_dssp TTEEEEEETTTTEEEEEEECSSS-EEEEEECT-TSSEEEEEEGGGTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSE
T ss_pred CCEEEEEECCCCeEEEEeecCCC-cceEEECC-CCCEEEEECCCCCeEEEEECCCCeEEEEEECC-CCccceEECCCCCE
Confidence 56778888899999998888764 78888884 45443 332 3443 24444444 48999999999998
Q ss_pred EEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEE-EEEeCCCeEEEEEeccCCCCccceeeeEEee
Q 037555 71 VASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLL-LSVSRDRQFSVFAIQRTGTGEIDYQLIARQE 149 (298)
Q Consensus 71 l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 149 (298)
|++++ ..++.|++||+.+++.+..+.. ...+.+++|+|+++.+ ++++.++.|++||+.. .+....+.
T Consensus 88 l~~~~----~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~-------~~~~~~~~ 155 (391)
T 1l0q_A 88 VYVTN----MASSTLSVIDTTSNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT-------KAVINTVS 155 (391)
T ss_dssp EEEEE----TTTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTT-------TEEEEEEE
T ss_pred EEEEE----CCCCEEEEEECCCCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCC-------CcEEEEEe
Confidence 87665 3479999999999988877774 4568999999999977 6788899999999986 44555555
Q ss_pred ccCCceEEEEEccCCCEE-EEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee---cCCc
Q 037555 150 AHKRIIWSCSWNPFGHEF-ATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM---ESGV 225 (298)
Q Consensus 150 ~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~---~dg~ 225 (298)
.+ ..+..++|+|+++++ ++++.++.|++||+++++... .+. +...+.+++|+|++ .++++++ .++.
T Consensus 156 ~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~---~~~-~~~~~~~~~~~~~g-----~~l~~~~~~~~~~~ 225 (391)
T 1l0q_A 156 VG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID---TVK-VEAAPSGIAVNPEG-----TKAYVTNVDKYFNT 225 (391)
T ss_dssp CC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE---EEE-CSSEEEEEEECTTS-----SEEEEEEECSSCCE
T ss_pred cC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEE---EEe-cCCCccceEECCCC-----CEEEEEecCcCCCc
Confidence 44 456999999999877 567788999999999887665 332 45678999999998 6777777 6899
Q ss_pred EEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEE-EeeeCCCcEEEeEec
Q 037555 226 IELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQL-ASCGADNTVRVFQVN 297 (298)
Q Consensus 226 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~iw~~~ 297 (298)
|++||+.++ +.+..+. .| ..+.+++|+|++ .+| ++++.|+.|++||+.
T Consensus 226 v~~~d~~~~-------------~~~~~~~---~~-~~~~~~~~s~dg-------~~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 226 VSMIDTGTN-------------KITARIP---VG-PDPAGIAVTPDG-------KKVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp EEEEETTTT-------------EEEEEEE---CC-SSEEEEEECTTS-------SEEEEEETTTTEEEEEETT
T ss_pred EEEEECCCC-------------eEEEEEe---cC-CCccEEEEccCC-------CEEEEEcCCCCEEEEEECC
Confidence 999999876 4444443 23 347899999998 555 788899999999974
No 122
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=2.9e-28 Score=201.82 Aligned_cols=220 Identities=11% Similarity=0.121 Sum_probs=142.1
Q ss_pred CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee-----eeccccccccEEEEEEcC--------CCCEEEEE
Q 037555 55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA-----MGRLQSHSLTVTQIRFSH--------DDNLLLSV 121 (298)
Q Consensus 55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~-----~~~~~~~~~~v~~~~~~~--------~~~~l~~~ 121 (298)
|...+....+++++.+|++++ .|++|+|||+++++. +..+.+|...|.+++|+| |+++|+++
T Consensus 88 ~~~~~~~~~~~~~~~~las~~-----~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~ 162 (393)
T 4gq1_A 88 HDGDGNVNSSPVYSLFLACVC-----QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASV 162 (393)
T ss_dssp ---------CCEEEEEEEEEE-----TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEE
T ss_pred cCCCcceeecCCCCCEEEEEe-----CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEE
Confidence 333344444455667889995 499999999987754 345789999999999998 78899999
Q ss_pred eCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCC-CEEEEeeCCCeEEEEEccCCcceeee----------
Q 037555 122 SRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG-HEFATGSRDKTVKIWAVENKSSVKQI---------- 190 (298)
Q Consensus 122 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~---------- 190 (298)
+.|++|+|||+.. ......+..|...|.+++|+|++ ++|++++.|+.|++||+++++.....
T Consensus 163 s~D~tv~~Wd~~~-------~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~ 235 (393)
T 4gq1_A 163 GDDCTLIIWRLTD-------EGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW 235 (393)
T ss_dssp ETTSEEEEEEEET-------TEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCC
T ss_pred ECCCeEEEEECCC-------CceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccce
Confidence 9999999999986 45566677889999999999987 58999999999999999876543211
Q ss_pred ------------eecCCCCCceEEEEEe-eccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCccee---eeec
Q 037555 191 ------------LALPPFNSSVTALSWV-GLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANII---IRFD 254 (298)
Q Consensus 191 ------------~~~~~~~~~v~~~~~~-~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~ 254 (298)
....+|...+.++.|. |++ ..|++++.|+.+++||+................... ....
T Consensus 236 ~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg-----~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~ 310 (393)
T 4gq1_A 236 LLTLNTLPLVNTCHSSGIASSLANVRWIGSDG-----SGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQ 310 (393)
T ss_dssp SEEEESGGGC------CCSSSCSEEEEETTTT-----CEEEEECTTSEEEEEEC-------------------CCSCSEE
T ss_pred EEecccccceeeeecccccccceeeeeecCCC-----CEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccc
Confidence 0123566778889987 566 799999999999999998764322111000000000 0000
Q ss_pred cCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 255 PFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 255 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
....+.. .....|+|.. ++.++++++.||+|++||+.
T Consensus 311 ~~~~~~~-~~~~~~~~~~-----~~~~~~sgs~Dg~V~lwd~~ 347 (393)
T 4gq1_A 311 GISLFPS-LLGACPHPRY-----MDYFATAHSQHGLIQLINTY 347 (393)
T ss_dssp EECSSCC-SSCCEECSSC-----TTEEEEEETTTTEEEEEETT
T ss_pred cccccCc-ceeEEEccCC-----CCEEEEEECCCCEEEEEECC
Confidence 0011111 2223333322 22677888999999999974
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=3e-26 Score=192.02 Aligned_cols=247 Identities=9% Similarity=0.084 Sum_probs=192.3
Q ss_pred cccceeeeecCcccc-----cccCCCCCceeeeccCCCccccccc------CCCC-----ceEEeccCCCceEEEEEcCC
Q 037555 4 ATRETVERHGNDGLD-----TLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESHKLYGHGNELFSLCCDHQ 67 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~~~~~h~~~v~~~~~s~~ 67 (298)
..++.++..+|+.+. .+.+|...|..+.+. +.+..+++. .+|+ .+..+..|...+.+++|+|+
T Consensus 144 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (433)
T 3bws_A 144 EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIP-EHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPI 222 (433)
T ss_dssp SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEG-GGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETT
T ss_pred CeEEEEECCCCeEeeecCcccccccCCceeEEEEc-CCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCC
Confidence 346777777787776 667889999999885 555555544 3443 45677789999999999999
Q ss_pred CCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe--------CCCeEEEEEeccCCCCc
Q 037555 68 GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS--------RDRQFSVFAIQRTGTGE 139 (298)
Q Consensus 68 ~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------~dg~i~iwd~~~~~~~~ 139 (298)
++.+++++ ..++.|++||+.+++.+..+..+ ..+.+++|+|+++.+++++ .|+.|++||+..
T Consensus 223 ~~~l~~~~----~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~----- 292 (433)
T 3bws_A 223 RDLVYCSN----WISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK----- 292 (433)
T ss_dssp TTEEEEEE----TTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT-----
T ss_pred CCEEEEEe----cCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC-----
Confidence 99886654 35899999999999888877754 4589999999999999888 488999999986
Q ss_pred cceeeeEEeeccCCceEEEEEccCCCEE-EEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEE
Q 037555 140 IDYQLIARQEAHKRIIWSCSWNPFGHEF-ATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLA 218 (298)
Q Consensus 140 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~ 218 (298)
.+..... .+...+..++|+|+++.+ ++++.|+.|++||+++++... .+. +...+.+++|+|++ .+++
T Consensus 293 --~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~---~~~-~~~~~~~~~~s~dg-----~~l~ 360 (433)
T 3bws_A 293 --EKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQK---SIP-VFDKPNTIALSPDG-----KYLY 360 (433)
T ss_dssp --TEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEE---EEE-CSSSEEEEEECTTS-----SEEE
T ss_pred --CcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEE---Eec-CCCCCCeEEEcCCC-----CEEE
Confidence 3333333 455678999999999755 666889999999999877665 333 56778999999998 6777
Q ss_pred Eeec---------------CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEE
Q 037555 219 VGME---------------SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLA 283 (298)
Q Consensus 219 ~g~~---------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 283 (298)
+++. ||.|++||+.++ +....+. +...+.+++|+|++ .+|+
T Consensus 361 ~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~-------------~~~~~~~----~~~~~~~~~~s~dg-------~~l~ 416 (433)
T 3bws_A 361 VSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD-------------TVKEFWE----AGNQPTGLDVSPDN-------RYLV 416 (433)
T ss_dssp EEECCCCCTTTCTTSCCSSCCEEEEEETTTT-------------EEEEEEE----CSSSEEEEEECTTS-------CEEE
T ss_pred EEecCCCccccccccccccceEEEEEECCCC-------------cEEEEec----CCCCCceEEEcCCC-------CEEE
Confidence 7765 579999999876 4444443 24578999999999 7877
Q ss_pred eee-CCCcEEEeEec
Q 037555 284 SCG-ADNTVRVFQVN 297 (298)
Q Consensus 284 s~~-~d~~i~iw~~~ 297 (298)
+++ .|+.|++|+++
T Consensus 417 ~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 417 ISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEETTTTEEEEEEET
T ss_pred EEECCCCeEEEEEec
Confidence 776 49999999985
No 124
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.95 E-value=2.9e-25 Score=178.31 Aligned_cols=205 Identities=20% Similarity=0.371 Sum_probs=167.0
Q ss_pred eccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 037555 52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFA 131 (298)
Q Consensus 52 ~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 131 (298)
+.+|...|++++|+|++++|++|+. |+.|++|++++++.+..+.+|...+.++.+ ++..+++++.++.+++|+
T Consensus 63 ~~~~~~~V~~v~~~~~~~~l~sgs~-----Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~ 135 (318)
T 4ggc_A 63 MEQPGEYISSVAWIKEGNYLAVGTS-----SAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHD 135 (318)
T ss_dssp CCSTTCCEEEEEECTTSSEEEEEET-----TSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEEC-----CCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeee
Confidence 3478889999999999999999954 999999999999999999999998877655 567999999999999999
Q ss_pred eccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCccee-eeeecCCCCCceEEEEEeeccc
Q 037555 132 IQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVK-QILALPPFNSSVTALSWVGLDR 210 (298)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~ 210 (298)
.... ...+..+..|...+..+.+.+++++|++++.|+.|++||+++++... .......+...|.+++++|.+.
T Consensus 136 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 209 (318)
T 4ggc_A 136 VRVA------EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS 209 (318)
T ss_dssp TTSS------SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTST
T ss_pred cCCC------ceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCC
Confidence 8764 34567778899999999999999999999999999999998765432 1123445778899999999873
Q ss_pred cCCccEE--EEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEee--e
Q 037555 211 QKNHGFL--AVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASC--G 286 (298)
Q Consensus 211 ~~~~~~l--~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~--~ 286 (298)
..+ ++++.++.|++||.+.. ...... .+...+..+.|+|++ ..++++ +
T Consensus 210 ----~~~~~~~~~~~~~i~lwd~~~~-------------~~~~~~----~~~~~v~~~~~~~~~-------~~~~~~sg~ 261 (318)
T 4ggc_A 210 ----NVLATGGGTSDRHIRIWNVCSG-------------ACLSAV----DAHSQVCSILWSPHY-------KELISGHGF 261 (318)
T ss_dssp ----TEEEEEECTTTCEEEEEETTTC-------------CEEEEE----ECSSCEEEEEEETTT-------TEEEEEECT
T ss_pred ----cEEEEEecCCCCEEEEEecccc-------------cccccc----cceeeeeeeeecccc-------cceEEEEEc
Confidence 443 45678899999998765 333322 367789999999998 555544 4
Q ss_pred CCCcEEEeEec
Q 037555 287 ADNTVRVFQVN 297 (298)
Q Consensus 287 ~d~~i~iw~~~ 297 (298)
.|+.|++||++
T Consensus 262 ~d~~i~iwd~~ 272 (318)
T 4ggc_A 262 AQNQLVIWKYP 272 (318)
T ss_dssp TTCCEEEEETT
T ss_pred CCCEEEEEECC
Confidence 79999999974
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=2.7e-25 Score=186.21 Aligned_cols=234 Identities=9% Similarity=0.027 Sum_probs=178.6
Q ss_pred cccccCCCCCceeeeccCCCccccccc------CCCC-----ceE-----EeccCCCceEEEEEcCCCCEEEeEeccCCC
Q 037555 17 LDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-----ESH-----KLYGHGNELFSLCCDHQGKLVASSCKAQST 80 (298)
Q Consensus 17 ~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-----~~~-----~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~ 80 (298)
+..+..+. .+.++.+.| .+..++.. .+|+ ... .+.+|...|.+++|+++++++++++
T Consensus 116 ~~~~~~~~-~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~----- 188 (433)
T 3bws_A 116 ISRFKTGF-QPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQM----- 188 (433)
T ss_dssp EEEEECSS-CBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEG-----
T ss_pred EEEEcCCC-CceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEEC-----
Confidence 33444433 345677775 55444443 2342 122 3447889999999999999999994
Q ss_pred CceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEE-eCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEE
Q 037555 81 AAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSV-SRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS 159 (298)
Q Consensus 81 ~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 159 (298)
.|+.|++||+++++.+..+..|...+.+++|+|+++.++++ +.|+.|++||+.. ...+..+.. ...+.+++
T Consensus 189 ~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~-------~~~~~~~~~-~~~~~~~~ 260 (433)
T 3bws_A 189 QANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT-------KLEIRKTDK-IGLPRGLL 260 (433)
T ss_dssp GGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT-------TEEEEECCC-CSEEEEEE
T ss_pred CCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC-------CcEEEEecC-CCCceEEE
Confidence 48999999999999888888899999999999999988554 4799999999986 444555444 45689999
Q ss_pred EccCCCEEEEee--------CCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEe
Q 037555 160 WNPFGHEFATGS--------RDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSI 231 (298)
Q Consensus 160 ~~~~~~~l~~~~--------~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~ 231 (298)
|+|+++++++++ .|+.|++||+++++.... + .+...+.+++|+|++. .++++++.++.|++||+
T Consensus 261 ~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~---~-~~~~~~~~~~~~~~g~----~l~~~~~~~~~v~v~d~ 332 (433)
T 3bws_A 261 LSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDT---I-GPPGNKRHIVSGNTEN----KIYVSDMCCSKIEVYDL 332 (433)
T ss_dssp ECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEE---E-EEEECEEEEEECSSTT----EEEEEETTTTEEEEEET
T ss_pred EcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEee---c-cCCCCcceEEECCCCC----EEEEEecCCCEEEEEEC
Confidence 999999999888 588999999998776552 2 2456789999999883 46677789999999999
Q ss_pred eecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC---------------CCcEEEeEe
Q 037555 232 SVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA---------------DNTVRVFQV 296 (298)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~---------------d~~i~iw~~ 296 (298)
.++ +....+. +...+.+++|+|++ .+|++++. ||.|++||+
T Consensus 333 ~~~-------------~~~~~~~----~~~~~~~~~~s~dg-------~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~ 388 (433)
T 3bws_A 333 KEK-------------KVQKSIP----VFDKPNTIALSPDG-------KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDT 388 (433)
T ss_dssp TTT-------------EEEEEEE----CSSSEEEEEECTTS-------SEEEEEECCCCCTTTCTTSCCSSCCEEEEEET
T ss_pred CCC-------------cEEEEec----CCCCCCeEEEcCCC-------CEEEEEecCCCccccccccccccceEEEEEEC
Confidence 865 4444432 56778999999999 77777765 579999997
Q ss_pred c
Q 037555 297 N 297 (298)
Q Consensus 297 ~ 297 (298)
.
T Consensus 389 ~ 389 (433)
T 3bws_A 389 T 389 (433)
T ss_dssp T
T ss_pred C
Confidence 4
No 126
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=2.9e-24 Score=177.59 Aligned_cols=203 Identities=13% Similarity=0.122 Sum_probs=159.1
Q ss_pred ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEE-eCCCe
Q 037555 48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSV-SRDRQ 126 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~ 126 (298)
.+..+..|. .+.+++|+|++++|++++ ..++.|++||+.+++.+..+..+. .+.+++|+|++++|+++ +.++.
T Consensus 24 ~~~~~~~~~-~~~~~~~s~dg~~l~~~~----~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~ 97 (391)
T 1l0q_A 24 VTATIPVGS-NPMGAVISPDGTKVYVAN----AHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASST 97 (391)
T ss_dssp EEEEEECSS-SEEEEEECTTSSEEEEEE----GGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTE
T ss_pred EEEEeecCC-CcceEEECCCCCEEEEEC----CCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCE
Confidence 345555554 589999999999875443 348999999999999888887554 89999999999977554 56799
Q ss_pred EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEE-EEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEE
Q 037555 127 FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEF-ATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSW 205 (298)
Q Consensus 127 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~ 205 (298)
|++||+.. .+.+..+.. ...+.+++|+|+++.+ ++++.++.|++||+++++... .+. ....+.+++|
T Consensus 98 v~v~d~~~-------~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~---~~~-~~~~~~~~~~ 165 (391)
T 1l0q_A 98 LSVIDTTS-------NTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN---TVS-VGRSPKGIAV 165 (391)
T ss_dssp EEEEETTT-------TEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE---EEE-CCSSEEEEEE
T ss_pred EEEEECCC-------CeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE---EEe-cCCCcceEEE
Confidence 99999986 444555544 4568999999999877 677889999999999887765 333 2355799999
Q ss_pred eeccccCCccEE-EEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEe
Q 037555 206 VGLDRQKNHGFL-AVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLAS 284 (298)
Q Consensus 206 ~~~~~~~~~~~l-~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s 284 (298)
+|++ ..+ ++++.++.|++||+++. .....+. +...+.+++|+|++ .+|++
T Consensus 166 ~~dg-----~~l~~~~~~~~~v~~~d~~~~-------------~~~~~~~----~~~~~~~~~~~~~g-------~~l~~ 216 (391)
T 1l0q_A 166 TPDG-----TKVYVANFDSMSISVIDTVTN-------------SVIDTVK----VEAAPSGIAVNPEG-------TKAYV 216 (391)
T ss_dssp CTTS-----SEEEEEETTTTEEEEEETTTT-------------EEEEEEE----CSSEEEEEEECTTS-------SEEEE
T ss_pred CCCC-----CEEEEEeCCCCEEEEEECCCC-------------eEEEEEe----cCCCccceEECCCC-------CEEEE
Confidence 9998 455 67788999999999876 4444432 45688999999999 77777
Q ss_pred ee---CCCcEEEeEec
Q 037555 285 CG---ADNTVRVFQVN 297 (298)
Q Consensus 285 ~~---~d~~i~iw~~~ 297 (298)
++ .++.|++||++
T Consensus 217 ~~~~~~~~~v~~~d~~ 232 (391)
T 1l0q_A 217 TNVDKYFNTVSMIDTG 232 (391)
T ss_dssp EEECSSCCEEEEEETT
T ss_pred EecCcCCCcEEEEECC
Confidence 77 68999999974
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=6.6e-24 Score=176.72 Aligned_cols=248 Identities=10% Similarity=0.045 Sum_probs=181.4
Q ss_pred ccceeee--ecCccc--ccccCCCCCceeeeccCC-------------Cccccc------------ccCCC----CceEE
Q 037555 5 TRETVER--HGNDGL--DTLESVPDAVPAVFTEPP-------------IEDQLA------------WHTLW----PESHK 51 (298)
Q Consensus 5 ~~~~~~~--~~~~~~--~~~~~~~~~v~~~~~~~~-------------~~~~~~------------~~~~~----~~~~~ 51 (298)
.++.++. .+|+.+ ..+.+|...+..+.+.+. .+..++ ...+| ...+.
T Consensus 94 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~ 173 (415)
T 2hqs_A 94 AYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFV 173 (415)
T ss_dssp EEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEE
T ss_pred EEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEE
Confidence 5678888 888877 447777766654443320 011111 11233 24677
Q ss_pred eccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEE-EEeCCCe--EE
Q 037555 52 LYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLL-SVSRDRQ--FS 128 (298)
Q Consensus 52 ~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~--i~ 128 (298)
+.+|...|.+++|+|+|+.|++++.+. .+..|++||+.+++.. .+..|...+.+++|+|||+.|+ +++.++. |+
T Consensus 174 l~~~~~~v~~~~~Spdg~~la~~s~~~--~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~ 250 (415)
T 2hqs_A 174 VHRSPQPLMSPAWSPDGSKLAYVTFES--GRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLY 250 (415)
T ss_dssp EEEESSCEEEEEECTTSSEEEEEECTT--SSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred EeCCCCcceeeEEcCCCCEEEEEEecC--CCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEE
Confidence 888999999999999999999997531 1359999999988765 4666888999999999999877 6666654 88
Q ss_pred EEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-CC--eEEEEEccCCcceeeeeecCCCCCceEEEEE
Q 037555 129 VFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-DK--TVKIWAVENKSSVKQILALPPFNSSVTALSW 205 (298)
Q Consensus 129 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~ 205 (298)
+||+... . ...+..|...+.+++|+|++++|++++. ++ .|.+||+.+++.. .+..+...+.+++|
T Consensus 251 ~~d~~~~-------~-~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~ 318 (415)
T 2hqs_A 251 VMDLASG-------Q-IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ----RITWEGSQNQDADV 318 (415)
T ss_dssp EEETTTC-------C-EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE----ECCCSSSEEEEEEE
T ss_pred EEECCCC-------C-EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE----EEecCCCcccCeEE
Confidence 9998752 2 3456678888999999999999998886 44 6788898876542 34446678899999
Q ss_pred eeccccCCccEEEEeecC---CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEE
Q 037555 206 VGLDRQKNHGFLAVGMES---GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQL 282 (298)
Q Consensus 206 ~~~~~~~~~~~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 282 (298)
+|++ .+|++++.+ ..|++||+.++ .. .. +..+. .+.+++|+|++ .+|
T Consensus 319 spdG-----~~l~~~~~~~g~~~i~~~d~~~~-------------~~-~~---l~~~~-~~~~~~~spdg-------~~l 368 (415)
T 2hqs_A 319 SSDG-----KFMVMVSSNGGQQHIAKQDLATG-------------GV-QV---LSSTF-LDETPSLAPNG-------TMV 368 (415)
T ss_dssp CTTS-----SEEEEEEECSSCEEEEEEETTTC-------------CE-EE---CCCSS-SCEEEEECTTS-------SEE
T ss_pred CCCC-----CEEEEEECcCCceEEEEEECCCC-------------CE-EE---ecCCC-CcCCeEEcCCC-------CEE
Confidence 9999 677777654 58999999765 22 22 22343 78999999999 788
Q ss_pred EeeeCCC---cEEEeEec
Q 037555 283 ASCGADN---TVRVFQVN 297 (298)
Q Consensus 283 ~s~~~d~---~i~iw~~~ 297 (298)
++++.++ .|++||++
T Consensus 369 ~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 369 IYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp EEEEEETTEEEEEEEETT
T ss_pred EEEEcCCCccEEEEEECC
Confidence 8888776 78888864
No 128
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.92 E-value=4.8e-24 Score=178.24 Aligned_cols=207 Identities=16% Similarity=0.163 Sum_probs=151.5
Q ss_pred CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee----------eec-----cccccccEEEEEEcCCCCEEE-
Q 037555 56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA----------MGR-----LQSHSLTVTQIRFSHDDNLLL- 119 (298)
Q Consensus 56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~----------~~~-----~~~~~~~v~~~~~~~~~~~l~- 119 (298)
...+..+++++++.++++++. ++ +++|+...... +.. ...+...|.+++|+|++++|+
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~-----dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav 109 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGA-----SG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSA 109 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEET-----TE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred CCCccEEEEecCCCEEEEECC-----CE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEE
Confidence 346889999999999999854 66 88887642111 000 012456799999999999999
Q ss_pred ---EEeCCCeEEEEEeccCCCCc----cceeeeEEeeccCCceEEEEEccC-CCEEEEeeCCCeEEEEEccCCcceeeee
Q 037555 120 ---SVSRDRQFSVFAIQRTGTGE----IDYQLIARQEAHKRIIWSCSWNPF-GHEFATGSRDKTVKIWAVENKSSVKQIL 191 (298)
Q Consensus 120 ---~~~~dg~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 191 (298)
+++.|+.|++||+....... ........+.+|...|.+++|+|+ +++|++++.||+|++||+++.....
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~--- 186 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVC--- 186 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEE---
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCccee---
Confidence 78889999999997631000 001234556678999999999997 7899999999999999999875443
Q ss_pred ecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeecc----CCcccceEEEEE
Q 037555 192 ALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDP----FACHVAAVNRMA 267 (298)
Q Consensus 192 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~ 267 (298)
....|...|.+++|+|++ .+|++|+.||.|++||.+ + .....+.. ...|...|.+++
T Consensus 187 ~~~~~~~~v~~v~wspdg-----~~lasgs~dg~v~iwd~~-~-------------~~~~~~~~~~~~~~~~~~~v~~v~ 247 (434)
T 2oit_A 187 ATLPSTVAVTSVCWSPKG-----KQLAVGKQNGTVVQYLPT-L-------------QEKKVIPCPPFYESDHPVRVLDVL 247 (434)
T ss_dssp EEECGGGCEEEEEECTTS-----SCEEEEETTSCEEEECTT-C-------------CEEEEECCCTTCCTTSCEEEEEEE
T ss_pred eccCCCCceeEEEEcCCC-----CEEEEEcCCCcEEEEccC-C-------------cccccccCCcccCCCCceeEEEEE
Confidence 334578899999999998 799999999999999987 2 11111110 113456899999
Q ss_pred eecCCCCCCCcceEEEe-eeCCCc------EEEeEec
Q 037555 268 WKTHEKPKNSRTMQLAS-CGADNT------VRVFQVN 297 (298)
Q Consensus 268 ~~~~~~~~~~~~~~l~s-~~~d~~------i~iw~~~ 297 (298)
|++++ .++++ ...||. +++|+++
T Consensus 248 w~~~~-------~~l~~~~~~dg~~~~~~~v~i~~l~ 277 (434)
T 2oit_A 248 WIGTY-------VFAIVYAAADGTLETSPDVVMALLP 277 (434)
T ss_dssp EEETT-------EEEEEEEETTCCSSSCCEEEEEECC
T ss_pred EecCc-------eEEEEEccCCCccCCCCceEEEEec
Confidence 99988 66644 334433 8899874
No 129
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.91 E-value=3.3e-22 Score=167.17 Aligned_cols=163 Identities=16% Similarity=0.235 Sum_probs=126.8
Q ss_pred cCCCceEEEEEcCCCCEEE----eEeccCCCCceEEEEEEcCCc--------ee---eeccccccccEEEEEEcCC-CCE
Q 037555 54 GHGNELFSLCCDHQGKLVA----SSCKAQSTAAAEIWLWEVGSW--------KA---MGRLQSHSLTVTQIRFSHD-DNL 117 (298)
Q Consensus 54 ~h~~~v~~~~~s~~~~~l~----~~~~~~~~~d~~i~vw~~~~~--------~~---~~~~~~~~~~v~~~~~~~~-~~~ 117 (298)
.+...|++++|+|++++|+ ++ +.|+.|+|||+.++ +. +..+.+|...|.+++|+|+ +++
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sg-----s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~ 164 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSS-----EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSM 164 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEET-----TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTE
T ss_pred cCCCcccEEEEcCCCCEEEEEEecc-----CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCE
Confidence 3567899999999999999 55 45999999998765 21 3556779999999999997 789
Q ss_pred EEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC---
Q 037555 118 LLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP--- 194 (298)
Q Consensus 118 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~--- 194 (298)
|++++.||+|++||++. .........|...|.+++|+|++++|++|+.||.|++||++ ++....+....
T Consensus 165 las~s~Dg~v~iwD~~~-------~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~ 236 (434)
T 2oit_A 165 VAVCLADGSIAVLQVTE-------TVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYE 236 (434)
T ss_dssp EEEEETTSCEEEEEESS-------SEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCC
T ss_pred EEEEECCCeEEEEEcCC-------CcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccC
Confidence 99999999999999987 33344556688899999999999999999999999999998 44333221111
Q ss_pred -CCCCceEEEEEeeccccCCccEEEE-eecCC------cEEEEEeeec
Q 037555 195 -PFNSSVTALSWVGLDRQKNHGFLAV-GMESG------VIELWSISVN 234 (298)
Q Consensus 195 -~~~~~v~~~~~~~~~~~~~~~~l~~-g~~dg------~i~vwd~~~~ 234 (298)
.|...+.+++|++++ .++++ ...+| .+++|+++..
T Consensus 237 ~~~~~~v~~v~w~~~~-----~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 237 SDHPVRVLDVLWIGTY-----VFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TTSCEEEEEEEEEETT-----EEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CCCceeEEEEEEecCc-----eEEEEEccCCCccCCCCceEEEEeccC
Confidence 123479999999977 45543 33443 3899999864
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=7e-22 Score=164.54 Aligned_cols=228 Identities=12% Similarity=0.046 Sum_probs=170.4
Q ss_pred cccceeeeecCcccccccCCCCCceeeeccCCCccccccc---------CCCC----ceEEeccCCCceEEEEEcCCCCE
Q 037555 4 ATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH---------TLWP----ESHKLYGHGNELFSLCCDHQGKL 70 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---------~~~~----~~~~~~~h~~~v~~~~~s~~~~~ 70 (298)
..++.++.. |..+..+.+|...+..+.++ |+++.++.. .+|+ ....+..|...+.+++|+|+|+.
T Consensus 159 ~~i~i~d~~-g~~~~~l~~~~~~v~~~~~S-pdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~ 236 (415)
T 2hqs_A 159 YELRVSDYD-GYNQFVVHRSPQPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSK 236 (415)
T ss_dssp EEEEEEETT-SCSCEEEEEESSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSE
T ss_pred ceEEEEcCC-CCCCEEEeCCCCcceeeEEc-CCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCE
Confidence 345556655 55678888899999999999 556655543 2332 34567788899999999999998
Q ss_pred EE-eEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC-CC--eEEEEEeccCCCCccceeeeE
Q 037555 71 VA-SSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR-DR--QFSVFAIQRTGTGEIDYQLIA 146 (298)
Q Consensus 71 l~-~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~ 146 (298)
|+ +++. ..+..|++||+.+++. ..+..|...+.+++|+|||+.|+.++. ++ .|.+||+.... ..
T Consensus 237 la~~~~~---~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~--------~~ 304 (415)
T 2hqs_A 237 LAFALSK---TGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA--------PQ 304 (415)
T ss_dssp EEEEECT---TSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC--------CE
T ss_pred EEEEEec---CCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC--------EE
Confidence 88 4533 2245799999988765 456678889999999999998888876 45 56677776521 23
Q ss_pred EeeccCCceEEEEEccCCCEEEEeeCC---CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecC
Q 037555 147 RQEAHKRIIWSCSWNPFGHEFATGSRD---KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMES 223 (298)
Q Consensus 147 ~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~d 223 (298)
.+..+...+..++|+|++++|++++.+ ..|++||+.+++.. .+..+. .+.+++|+|++ .+|++++.+
T Consensus 305 ~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~----~l~~~~-~~~~~~~spdg-----~~l~~~s~~ 374 (415)
T 2hqs_A 305 RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ----VLSSTF-LDETPSLAPNG-----TMVIYSSSQ 374 (415)
T ss_dssp ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE----ECCCSS-SCEEEEECTTS-----SEEEEEEEE
T ss_pred EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE----EecCCC-CcCCeEEcCCC-----CEEEEEEcC
Confidence 344566788999999999999988764 58999999987653 344343 88999999999 678777766
Q ss_pred C---cEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555 224 G---VIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE 272 (298)
Q Consensus 224 g---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 272 (298)
+ .|++||+... .... +..|.+.|.+++|+|..
T Consensus 375 ~~~~~l~~~d~~g~--------------~~~~---l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 375 GMGSVLNLVSTDGR--------------FKAR---LPATDGQVKFPAWSPYL 409 (415)
T ss_dssp TTEEEEEEEETTSC--------------CEEE---CCCSSSEEEEEEECCCC
T ss_pred CCccEEEEEECCCC--------------cEEE---eeCCCCCCcCCcccccc
Confidence 6 7999998643 2233 45688999999999965
No 131
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=9.6e-22 Score=155.81 Aligned_cols=207 Identities=11% Similarity=0.128 Sum_probs=154.3
Q ss_pred ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC-ceeeeccccc-cccEEEEEEcCCCCEEEEEe--C
Q 037555 48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS-WKAMGRLQSH-SLTVTQIRFSHDDNLLLSVS--R 123 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~--~ 123 (298)
....+..|...|.+++|+|++++|++++ ++.|++||+.+ ++.......+ ...+.+++|+|++++|++++ .
T Consensus 33 ~~~~~~~~~~~v~~~~~spdg~~l~~~~------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 106 (297)
T 2ojh_A 33 KMRVVWQTPELFEAPNWSPDGKYLLLNS------EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVE 106 (297)
T ss_dssp EEEEEEEESSCCEEEEECTTSSEEEEEE------TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTT
T ss_pred ceeeeccCCcceEeeEECCCCCEEEEEc------CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCC
Confidence 3556677899999999999999999984 67999999998 7776666555 46789999999999999998 4
Q ss_pred CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEE-EeeCCCeEEEEEccCC-cceeeeeecCCCCCceE
Q 037555 124 DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFA-TGSRDKTVKIWAVENK-SSVKQILALPPFNSSVT 201 (298)
Q Consensus 124 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~-~~~~~~~~~~~~~~~v~ 201 (298)
++...+|.++... . ....+..+ ..+..++|+|+++.|+ ++..++.+++|+++.. .... .+..+...+.
T Consensus 107 ~~~~~l~~~~~~~-----~-~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~ 176 (297)
T 2ojh_A 107 FGKSAIYLLPSTG-----G-TPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET---RLTHGEGRND 176 (297)
T ss_dssp TSSCEEEEEETTC-----C-CCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE---ECCCSSSCEE
T ss_pred CCcceEEEEECCC-----C-ceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcce---EcccCCCccc
Confidence 4566677665322 1 12333333 3488899999999877 6778999999987532 2222 4555778899
Q ss_pred EEEEeeccccCCccEEEEee-cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcce
Q 037555 202 ALSWVGLDRQKNHGFLAVGM-ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTM 280 (298)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 280 (298)
+++|+|++ .+|+.++ .++.+++|++.... ..... +..|...+..++|+|++ .
T Consensus 177 ~~~~s~dg-----~~l~~~~~~~~~~~i~~~~~~~------------~~~~~---~~~~~~~~~~~~~s~dg-------~ 229 (297)
T 2ojh_A 177 GPDYSPDG-----RWIYFNSSRTGQMQIWRVRVDG------------SSVER---ITDSAYGDWFPHPSPSG-------D 229 (297)
T ss_dssp EEEECTTS-----SEEEEEECTTSSCEEEEEETTS------------SCEEE---CCCCSEEEEEEEECTTS-------S
T ss_pred cceECCCC-----CEEEEEecCCCCccEEEECCCC------------CCcEE---EecCCcccCCeEECCCC-------C
Confidence 99999998 5666555 58999999987321 22233 34577889999999999 7
Q ss_pred EEEeeeCC-----------CcEEEeEec
Q 037555 281 QLASCGAD-----------NTVRVFQVN 297 (298)
Q Consensus 281 ~l~s~~~d-----------~~i~iw~~~ 297 (298)
+|++++.+ +.|++||++
T Consensus 230 ~l~~~~~~~~~~~~~~~~~~~l~~~d~~ 257 (297)
T 2ojh_A 230 KVVFVSYDADVFDHPRDLDVRVQLMDMD 257 (297)
T ss_dssp EEEEEEEETTCCSCCSSEEEEEEEEETT
T ss_pred EEEEEEcCCCCCcccccCceEEEEEecC
Confidence 88877765 568999864
No 132
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=3.5e-22 Score=158.33 Aligned_cols=247 Identities=14% Similarity=0.054 Sum_probs=171.9
Q ss_pred ccccceeeeecCcccccccCCCCCceeeeccCCCccccccc-----CCCC------ceEEeccC-CCceEEEEEcCCCCE
Q 037555 3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH-----TLWP------ESHKLYGH-GNELFSLCCDHQGKL 70 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~------~~~~~~~h-~~~v~~~~~s~~~~~ 70 (298)
+..+..++..+++.. .+..|...+..+.++ |.+..++.. .+|+ ....+.+| ...|.+++|+|++++
T Consensus 21 ~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~s-pdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 98 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMR-VVWQTPELFEAPNWS-PDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGAL 98 (297)
T ss_dssp CEEEEEEETTTTEEE-EEEEESSCCEEEEEC-TTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSE
T ss_pred ceeEEEEeCCCCcee-eeccCCcceEeeEEC-CCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCCE
Confidence 345666777776655 556688899999999 556555544 1221 22223344 367899999999999
Q ss_pred EEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEE-EEeCCCeEEEEEeccCCCCccceeeeEEee
Q 037555 71 VASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLL-SVSRDRQFSVFAIQRTGTGEIDYQLIARQE 149 (298)
Q Consensus 71 l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 149 (298)
|++++.+. .....|.+++..+++ ...+..+ ..+..++|+|+++.|+ +++.++.+++|+++... .....+.
T Consensus 99 l~~~~~~~-~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~------~~~~~~~ 169 (297)
T 2ojh_A 99 YAISDKVE-FGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS------GVETRLT 169 (297)
T ss_dssp EEEEECTT-TSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTT------CCEEECC
T ss_pred EEEEEeCC-CCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCC------CcceEcc
Confidence 99997411 123556666666554 3334433 3488999999999877 78889999999986432 2234556
Q ss_pred ccCCceEEEEEccCCCEEEEee-CCCeEEEEEcc-CCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecC----
Q 037555 150 AHKRIIWSCSWNPFGHEFATGS-RDKTVKIWAVE-NKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMES---- 223 (298)
Q Consensus 150 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~d---- 223 (298)
.+...+.+++|+|++++|++++ .++.+++|++. ...... .+..+...+.+++|+|++ .+|++++.+
T Consensus 170 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~s~dg-----~~l~~~~~~~~~~ 241 (297)
T 2ojh_A 170 HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVE---RITDSAYGDWFPHPSPSG-----DKVVFVSYDADVF 241 (297)
T ss_dssp CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEE---ECCCCSEEEEEEEECTTS-----SEEEEEEEETTCC
T ss_pred cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcE---EEecCCcccCCeEECCCC-----CEEEEEEcCCCCC
Confidence 6778899999999999888766 58999999987 344444 555677789999999998 677777655
Q ss_pred -------CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCC
Q 037555 224 -------GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADN 289 (298)
Q Consensus 224 -------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~ 289 (298)
+.|++||+.+++. ..+.. +.+|...+..++|+|++ .+|++++.|.
T Consensus 242 ~~~~~~~~~l~~~d~~~~~~-----------~~~~~---~~~~~~~~~~~~~spdg-------~~l~~~~~~~ 293 (297)
T 2ojh_A 242 DHPRDLDVRVQLMDMDGGNV-----------ETLFD---LFGGQGTMNSPNWSPDG-------DEFAYVRYFP 293 (297)
T ss_dssp SCCSSEEEEEEEEETTSCSC-----------EEEEE---EEESTTTSCSCCBCTTS-------SEEEEEEECC
T ss_pred cccccCceEEEEEecCCCCc-----------eeeec---cCCCCcccccceECCCC-------CEEEEEEecc
Confidence 5699999876521 11222 23577789999999999 7777776553
No 133
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.89 E-value=4.4e-21 Score=154.93 Aligned_cols=261 Identities=11% Similarity=0.053 Sum_probs=171.6
Q ss_pred ccccceeeeecCcccccccCCCCCceeeeccCCCccccccc-C------CC-----Cc-eEEeccCCCceEEEEEcCCCC
Q 037555 3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH-T------LW-----PE-SHKLYGHGNELFSLCCDHQGK 69 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~------~~-----~~-~~~~~~h~~~v~~~~~s~~~~ 69 (298)
+..+..++..+++.+..+..+.... .+.++ |.+..+... . +| .. ...+..+..+..+++|+|+|+
T Consensus 19 ~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s-~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 96 (331)
T 3u4y_A 19 LRRISFFSTDTLEILNQITLGYDFV-DTAIT-SDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQ 96 (331)
T ss_dssp GTEEEEEETTTCCEEEEEECCCCEE-EEEEC-SSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSS
T ss_pred CCeEEEEeCcccceeeeEEccCCcc-eEEEc-CCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCC
Confidence 3456777888888888777665556 88888 444433222 1 12 12 555556666666699999999
Q ss_pred EEEeEeccCCCCce--EEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEE-eCCCe-EEEEEeccCCCCccceeee
Q 037555 70 LVASSCKAQSTAAA--EIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSV-SRDRQ-FSVFAIQRTGTGEIDYQLI 145 (298)
Q Consensus 70 ~l~~~~~~~~~~d~--~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~-i~iwd~~~~~~~~~~~~~~ 145 (298)
+|+++.. .++ .|.+||+.+++.+..+.. .....+++|+|+|++++++ ..++. |.+|++........ ..
T Consensus 97 ~l~~~~~----~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~-~~-- 168 (331)
T 3u4y_A 97 FAVTVTG----LNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFD-TG-- 168 (331)
T ss_dssp EEEECCC----SSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEE-EE--
T ss_pred EEEEecC----CCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEee-cC--
Confidence 9995422 123 999999999988877664 3456899999999855554 55578 99999875321100 11
Q ss_pred EEeeccCCceEEEEEccCCCEEEEee-CCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEe-ecC
Q 037555 146 ARQEAHKRIIWSCSWNPFGHEFATGS-RDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVG-MES 223 (298)
Q Consensus 146 ~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g-~~d 223 (298)
............++|+|+++++++++ .++.|++||+.+++....+..+. ....+..++|+|++ .+++++ ..+
T Consensus 169 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg-----~~l~v~~~~~ 242 (331)
T 3u4y_A 169 QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG-TNNLPGTIVVSRDG-----STVYVLTEST 242 (331)
T ss_dssp EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE-CSSCCCCEEECTTS-----SEEEEECSSE
T ss_pred CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc-CCCCCceEEECCCC-----CEEEEEEcCC
Confidence 12223445678999999998665554 68999999999888722222443 34667899999998 555544 457
Q ss_pred CcEEEEEeeecccccccCCCCCCcceeeeecc-C---CcccceEEEEEeecCCCCCCCcceEE-EeeeCCCcEEEeEec
Q 037555 224 GVIELWSISVNRTNDVSTPAPSTANIIIRFDP-F---ACHVAAVNRMAWKTHEKPKNSRTMQL-ASCGADNTVRVFQVN 297 (298)
Q Consensus 224 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~v~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~iw~~~ 297 (298)
+.|.+||+.+++.. .+..+.. . .........++|+|++ .+| +++..++.|.+||+.
T Consensus 243 ~~i~~~d~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~spdg-------~~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 243 VDVFNFNQLSGTLS-----------FVKSFGHGLLIDPRPLFGANQMALNKTE-------TKLFISANISRELKVFTIS 303 (331)
T ss_dssp EEEEEEETTTTEEE-----------EEEEEECCCCCCCGGGTTCCCEEECTTS-------SEEEEEETTTTEEEEEETT
T ss_pred CEEEEEECCCCcee-----------eecccccccccCCCCcccccceEECCCC-------CEEEEecCCCCcEEEEEec
Confidence 88999999775321 1111110 0 1111223568999999 555 555567799999975
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=7.4e-20 Score=148.21 Aligned_cols=258 Identities=12% Similarity=0.117 Sum_probs=163.2
Q ss_pred cccceeeee-cCcc-cccccCCCCCceeeeccCCCccccccc-------CCCC---------ceEEeccCCCceEEEEEc
Q 037555 4 ATRETVERH-GNDG-LDTLESVPDAVPAVFTEPPIEDQLAWH-------TLWP---------ESHKLYGHGNELFSLCCD 65 (298)
Q Consensus 4 ~~~~~~~~~-~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~-------~~~~---------~~~~~~~h~~~v~~~~~s 65 (298)
..++.++.. +|+. ......+...+..+.++| .+..++.. .+|. .+..+..+. .+..++|+
T Consensus 15 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s 92 (343)
T 1ri6_A 15 QQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTD 92 (343)
T ss_dssp TEEEEEEECTTSCEEEEEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEEC
T ss_pred CeEEEEEECCCCcEEEeeeEecCCCCceEEECC-CCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEc
Confidence 345555553 2321 122234556677778874 44433332 1221 122333333 78899999
Q ss_pred CCCCEEEeEeccCCCCceEEEEEEc---CCceeeeccccccccEEEEEEcCCCCEEEEEe-CCCeEEEEEeccCCCCccc
Q 037555 66 HQGKLVASSCKAQSTAAAEIWLWEV---GSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS-RDRQFSVFAIQRTGTGEID 141 (298)
Q Consensus 66 ~~~~~l~~~~~~~~~~d~~i~vw~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~ 141 (298)
|++++|++++. .++.|.+|++ ...+.+..+.. ...+.+++|+|+++++++++ .++.|.+||+.....
T Consensus 93 ~dg~~l~~~~~----~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~---- 163 (343)
T 1ri6_A 93 HQGQFVFVGSY----NAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH---- 163 (343)
T ss_dssp TTSSEEEEEET----TTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC----
T ss_pred CCCCEEEEEec----CCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCc----
Confidence 99998877753 4789999999 44445555553 34588999999999888877 899999999975221
Q ss_pred eeeeE--Eee-ccCCceEEEEEccCCCEEEEee-CCCeEEEEEccC--Ccc--eeeeeecCCC---CCceEEEEEeeccc
Q 037555 142 YQLIA--RQE-AHKRIIWSCSWNPFGHEFATGS-RDKTVKIWAVEN--KSS--VKQILALPPF---NSSVTALSWVGLDR 210 (298)
Q Consensus 142 ~~~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~--~~~--~~~~~~~~~~---~~~v~~~~~~~~~~ 210 (298)
..... ... .....+..++|+|+++++++++ .++.|.+||+.. ++. ......+... ...+..++|+|++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg- 242 (343)
T 1ri6_A 164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG- 242 (343)
T ss_dssp EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS-
T ss_pred eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC-
Confidence 11111 222 2345788899999999776555 789999999954 322 2222122211 2356789999998
Q ss_pred cCCccEEE-EeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeee-CC
Q 037555 211 QKNHGFLA-VGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCG-AD 288 (298)
Q Consensus 211 ~~~~~~l~-~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~-~d 288 (298)
.+|+ ++..++.|.+|++...... ...+..+. .+.. +..++|+|++ .+|++++ .+
T Consensus 243 ----~~l~v~~~~~~~i~v~d~~~~~~~---------~~~~~~~~---~~~~-~~~~~~s~dg-------~~l~~~~~~~ 298 (343)
T 1ri6_A 243 ----RHLYACDRTASLITVFSVSEDGSV---------LSKEGFQP---TETQ-PRGFNVDHSG-------KYLIAAGQKS 298 (343)
T ss_dssp ----SEEEEEETTTTEEEEEEECTTSCC---------EEEEEEEE---CSSS-CCCEEECTTS-------SEEEEECTTT
T ss_pred ----CEEEEEecCCCEEEEEEEcCCCCc---------eEEeeeec---CCCc-cceEEECCCC-------CEEEEecCCC
Confidence 5555 5557899999999731100 02222222 2333 8899999999 6666666 68
Q ss_pred CcEEEeEec
Q 037555 289 NTVRVFQVN 297 (298)
Q Consensus 289 ~~i~iw~~~ 297 (298)
+.|.+|+++
T Consensus 299 ~~v~v~~~d 307 (343)
T 1ri6_A 299 HHISVYEIV 307 (343)
T ss_dssp CEEEEEEEE
T ss_pred CeEEEEEEc
Confidence 999999764
No 135
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=3.6e-20 Score=150.02 Aligned_cols=213 Identities=9% Similarity=0.098 Sum_probs=146.6
Q ss_pred cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcC--Cce--eeeccccccccEEEEEEcCCCCEEEEEeC-CCeEE
Q 037555 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVG--SWK--AMGRLQSHSLTVTQIRFSHDDNLLLSVSR-DRQFS 128 (298)
Q Consensus 54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~--~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~ 128 (298)
.|...+.+++|+|++++|++++. .++.|.+|++. +++ .+..+..+. .+..++|+|+++++++++. ++.|.
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~ 109 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVR----PEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVS 109 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEET----TTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEE
T ss_pred ecCCCCceEEECCCCCEEEEeec----CCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEE
Confidence 57778999999999999988864 24899999997 444 334444333 7889999999998876665 88999
Q ss_pred EEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee-CCCeEEEEEccC-Ccceeee--eecCCCCCceEEEE
Q 037555 129 VFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS-RDKTVKIWAVEN-KSSVKQI--LALPPFNSSVTALS 204 (298)
Q Consensus 129 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~-~~~~~~~--~~~~~~~~~v~~~~ 204 (298)
+||+..... ......+.. ...+.+++|+|+++++++++ .++.|++||+.+ ++..... .........+..++
T Consensus 110 ~~d~~~~~~----~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (343)
T 1ri6_A 110 VTRLEDGLP----VGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMV 184 (343)
T ss_dssp EEEEETTEE----EEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEE
T ss_pred EEECCCCcc----ccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEE
Confidence 999952110 333444433 34588999999999888887 899999999987 4332111 11112345788999
Q ss_pred EeeccccCCccEEE-EeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCc---ccceEEEEEeecCCCCCCCcce
Q 037555 205 WVGLDRQKNHGFLA-VGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFAC---HVAAVNRMAWKTHEKPKNSRTM 280 (298)
Q Consensus 205 ~~~~~~~~~~~~l~-~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~ 280 (298)
|+|++ .+++ ++..++.|.+|++....... .....+..... ....+..++|+|++ .
T Consensus 185 ~~pdg-----~~l~~~~~~~~~i~~~~~~~~~g~~---------~~~~~~~~~~~~~~~~~~~~~i~~s~dg-------~ 243 (343)
T 1ri6_A 185 FHPNE-----QYAYCVNELNSSVDVWELKDPHGNI---------ECVQTLDMMPENFSDTRWAADIHITPDG-------R 243 (343)
T ss_dssp ECTTS-----SEEEEEETTTTEEEEEESSCTTSCC---------EEEEEEECSCTTCCSCCCEEEEEECTTS-------S
T ss_pred ECCCC-----CEEEEEeCCCCEEEEEEecCCCCcE---------EEEeeccccCccccccCCccceEECCCC-------C
Confidence 99998 5554 55578999999996421100 11222221111 13467789999998 5
Q ss_pred EEE-eeeCCCcEEEeEec
Q 037555 281 QLA-SCGADNTVRVFQVN 297 (298)
Q Consensus 281 ~l~-s~~~d~~i~iw~~~ 297 (298)
+|+ ++..++.|++|+++
T Consensus 244 ~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 244 HLYACDRTASLITVFSVS 261 (343)
T ss_dssp EEEEEETTTTEEEEEEEC
T ss_pred EEEEEecCCCEEEEEEEc
Confidence 555 66689999999985
No 136
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=1.1e-19 Score=147.76 Aligned_cols=213 Identities=8% Similarity=0.082 Sum_probs=143.3
Q ss_pred EeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC---ceeeecccc---------ccccEEEEEEcCCCCEE
Q 037555 51 KLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS---WKAMGRLQS---------HSLTVTQIRFSHDDNLL 118 (298)
Q Consensus 51 ~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~---~~~~~~~~~---------~~~~v~~~~~~~~~~~l 118 (298)
.+..+...+..++|+|+|++|++++. .++.|.+|++.. .+.+..+.. +...+.+++|+|+++++
T Consensus 80 ~~~~~~~~p~~~a~spdg~~l~~~~~----~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~ 155 (347)
T 3hfq_A 80 TVVAPGTPPAYVAVDEARQLVYSANY----HKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLA 155 (347)
T ss_dssp EEEEESCCCSEEEEETTTTEEEEEET----TTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEE
T ss_pred eeecCCCCCEEEEECCCCCEEEEEeC----CCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEE
Confidence 33457778899999999999988863 478999999962 233333321 12348899999999966
Q ss_pred EEEeCCCeEEEEEeccCCCCccceeeeEEeec-cCCceEEEEEccCCCEEEEe-eCCCeEEEEEccC--CcceeeeeecC
Q 037555 119 LSVSRDRQFSVFAIQRTGTGEIDYQLIARQEA-HKRIIWSCSWNPFGHEFATG-SRDKTVKIWAVEN--KSSVKQILALP 194 (298)
Q Consensus 119 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~--~~~~~~~~~~~ 194 (298)
++...++.|.+|++..... ......... .......++|+|++++++++ ..++.|.+|++.. ++. ..+..+.
T Consensus 156 v~~~~~~~v~~~~~~~~g~----~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~-~~~~~~~ 230 (347)
T 3hfq_A 156 VIDLGSDKVYVYNVSDAGQ----LSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAF-TQLGIVK 230 (347)
T ss_dssp EEETTTTEEEEEEECTTSC----EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEE-EEEEEEE
T ss_pred EEeCCCCEEEEEEECCCCc----EEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCce-EEeeeee
Confidence 6666789999999983211 122222222 23357789999999966664 5688999999875 322 1111221
Q ss_pred CCC------CceEEEEEeeccccCCccEE-EEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEE
Q 037555 195 PFN------SSVTALSWVGLDRQKNHGFL-AVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMA 267 (298)
Q Consensus 195 ~~~------~~v~~~~~~~~~~~~~~~~l-~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 267 (298)
... ..+..++|+|++ .+| ++...++.|.+|++...... ..+.. +..+...+..++
T Consensus 231 ~~~~~~~~~~~~~~i~~spdG-----~~l~v~~~~~~~v~v~~~~~~g~~----------~~~~~---~~~~~~~~~~~~ 292 (347)
T 3hfq_A 231 TIPADYTAHNGAAAIRLSHDG-----HFLYVSNRGYNTLAVFAVTADGHL----------TLIQQ---ISTEGDFPRDFD 292 (347)
T ss_dssp SSCTTCCSCCEEEEEEECTTS-----CEEEEEEETTTEEEEEEECGGGCE----------EEEEE---EECSSSCCCEEE
T ss_pred ecCCCCCCCCcceeEEECCCC-----CEEEEEeCCCCEEEEEEECCCCcE----------EEeEE---EecCCCCcCeEE
Confidence 111 458899999999 555 55666899999999743100 22222 233556688999
Q ss_pred eecCCCCCCCcceEEEeeeC-CCcEEEeEec
Q 037555 268 WKTHEKPKNSRTMQLASCGA-DNTVRVFQVN 297 (298)
Q Consensus 268 ~~~~~~~~~~~~~~l~s~~~-d~~i~iw~~~ 297 (298)
|+|++ ++|++++. ++.|.+|+++
T Consensus 293 ~spdg-------~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 293 LDPTE-------AFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp ECTTS-------SEEEEEETTTTEEEEEEEC
T ss_pred ECCCC-------CEEEEEEcCCCcEEEEEEe
Confidence 99999 77777665 5899999764
No 137
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.87 E-value=2.6e-20 Score=159.84 Aligned_cols=260 Identities=9% Similarity=0.069 Sum_probs=181.9
Q ss_pred cccceeeeecCcccccccCCCCCceeeeccCCCccccccc------CCCC-------ceEEeccCCCceEEEEEcC----
Q 037555 4 ATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH------TLWP-------ESHKLYGHGNELFSLCCDH---- 66 (298)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~------~~~~-------~~~~~~~h~~~v~~~~~s~---- 66 (298)
..+..++..+++.+..+..+.. +..+.++ |++..+... .+|+ .+.++. +...+..++|+|
T Consensus 159 ~~V~v~D~~t~~~~~~i~~g~~-~~~v~~s-pdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~p~~va~sp~~~~ 235 (543)
T 1nir_A 159 GQIALVDGDSKKIVKVIDTGYA-VHISRMS-ASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIEARSVESSKFKGY 235 (543)
T ss_dssp TEEEEEETTTCCEEEEEECSTT-EEEEEEC-TTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSEEEEEEECCSTTC
T ss_pred CeEEEEECCCceEEEEEecCcc-cceEEEC-CCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCCcceEEeCCCcCC
Confidence 4566778888988888884333 7788888 555555443 2222 244454 455689999999
Q ss_pred CCCEEEeEeccCCCCceEEEEEEcCCceeeecccc----------cc-ccEEEEEEcCCCC-EEEEEeCCCeEEEEEecc
Q 037555 67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS----------HS-LTVTQIRFSHDDN-LLLSVSRDRQFSVFAIQR 134 (298)
Q Consensus 67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~----------~~-~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~ 134 (298)
+|++|++++. .+++|.+||..+++++..+.. |. ..+..+.++|++. ++++...++.|.+||+..
T Consensus 236 dg~~l~v~~~----~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~ 311 (543)
T 1nir_A 236 EDRYTIAGAY----WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKD 311 (543)
T ss_dssp TTTEEEEEEE----ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTT
T ss_pred CCCEEEEEEc----cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecC
Confidence 9999999863 378999999999988877654 22 2789999999766 556667799999999986
Q ss_pred CCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee-CCCeEEEEEccCCcceeeeeecC-CCCCceEEEEEeeccccC
Q 037555 135 TGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS-RDKTVKIWAVENKSSVKQILALP-PFNSSVTALSWVGLDRQK 212 (298)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~ 212 (298)
... ..+..+ .+...+..+.|+|++++|++++ .+++|.+||+.+++....+..-. .|......+ ++|++.
T Consensus 312 ~~~-----l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g-- 382 (543)
T 1nir_A 312 IDN-----LTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYG-- 382 (543)
T ss_dssp SSS-----CEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTE--
T ss_pred CCc-----ceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCc--
Confidence 432 111232 3456688899999999877655 58999999999988776443211 243333333 466631
Q ss_pred CccEEEEee-cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeee-----
Q 037555 213 NHGFLAVGM-ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCG----- 286 (298)
Q Consensus 213 ~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~----- 286 (298)
.+++++. .|+.|.+||+.+.... ...++++..+ ..|...+..++++|++ ++|++++
T Consensus 383 --~~~~s~~~~d~~V~v~d~~~~~~~------~~~~~~v~~l---~~~g~~~~~v~~~pdg-------~~l~v~~~~~~~ 444 (543)
T 1nir_A 383 --PVWSTSHLGDGSISLIGTDPKNHP------QYAWKKVAEL---QGQGGGSLFIKTHPKS-------SHLYVDTTFNPD 444 (543)
T ss_dssp --EEEEEEBSSSSEEEEEECCTTTCT------TTBTSEEEEE---ECSCSCCCCEECCTTC-------CEEEECCTTCSS
T ss_pred --cEEEeccCCCceEEEEEeCCCCCc------hhcCeEEEEE---EcCCCCceEEEcCCCC-------CcEEEecCCCCC
Confidence 5677765 6899999999863111 0112555554 3577788899999999 7888876
Q ss_pred --CCCcEEEeEec
Q 037555 287 --ADNTVRVFQVN 297 (298)
Q Consensus 287 --~d~~i~iw~~~ 297 (298)
.+++|.+||++
T Consensus 445 ~~~~~~v~v~d~~ 457 (543)
T 1nir_A 445 ARISQSVAVFDLK 457 (543)
T ss_dssp HHHHTCEEEEETT
T ss_pred cccCceEEEEECC
Confidence 27799999975
No 138
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.87 E-value=5.1e-21 Score=170.81 Aligned_cols=249 Identities=12% Similarity=0.102 Sum_probs=174.4
Q ss_pred ccceeeeecCcccccccCCCC------------------------CceeeeccCCCccccccc-----CCCC-------c
Q 037555 5 TRETVERHGNDGLDTLESVPD------------------------AVPAVFTEPPIEDQLAWH-----TLWP-------E 48 (298)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~------------------------~v~~~~~~~~~~~~~~~~-----~~~~-------~ 48 (298)
.+..++..+|+....+..+.. .+..+.++ |+++.++.. .+|+ .
T Consensus 65 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S-pDg~~l~~~~~~~i~~~d~~~~~~~~ 143 (741)
T 2ecf_A 65 DLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS-PDAQRLLFPLGGELYLYDLKQEGKAA 143 (741)
T ss_dssp EEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC-TTSSEEEEEETTEEEEEESSSCSTTS
T ss_pred EEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC-CCCCEEEEEeCCcEEEEECCCCCcce
Confidence 456666777776555554432 26778888 566655543 2232 4
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccccccc----------------EEEEEEc
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLT----------------VTQIRFS 112 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~----------------v~~~~~~ 112 (298)
...+..|...+.+++|+|||++|+.++ ++.|++||+.+++.......+... +..++|+
T Consensus 144 ~~~l~~~~~~~~~~~~SPDG~~la~~~------~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~S 217 (741)
T 2ecf_A 144 VRQLTHGEGFATDAKLSPKGGFVSFIR------GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWA 217 (741)
T ss_dssp CCBCCCSSSCEEEEEECTTSSEEEEEE------TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEEC
T ss_pred EEEcccCCcccccccCCCCCCEEEEEe------CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEEC
Confidence 456677888999999999999999985 468999999988776554433332 4779999
Q ss_pred CCCCEEEEEeCCC---------------------------------eEEEEEecc-CCCCccceeeeEEeeccCCceEEE
Q 037555 113 HDDNLLLSVSRDR---------------------------------QFSVFAIQR-TGTGEIDYQLIARQEAHKRIIWSC 158 (298)
Q Consensus 113 ~~~~~l~~~~~dg---------------------------------~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~v~~~ 158 (298)
|||++|++++.|+ .|.+||+.. ... ..+.....|...+..+
T Consensus 218 pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~-----~~~~~~~~~~~~~~~~ 292 (741)
T 2ecf_A 218 PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQT-----QWIDLGKEQDIYLARV 292 (741)
T ss_dssp TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCC-----EEECCCSCSSEEEEEE
T ss_pred CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCce-----EEecCCCCcceEEEEE
Confidence 9999999987765 788888765 321 1111111467789999
Q ss_pred EEccCCCEEEEeeC-----CCeEEEEEccCCcceeeeeecCCCCC----ceEEEEEeeccccCCccEEEEeecCCcEEEE
Q 037555 159 SWNPFGHEFATGSR-----DKTVKIWAVENKSSVKQILALPPFNS----SVTALSWVGLDRQKNHGFLAVGMESGVIELW 229 (298)
Q Consensus 159 ~~~~~~~~l~~~~~-----dg~i~~wd~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vw 229 (298)
+| |++++|++++. +..|++||+.+++....+. .+.. .+..++|+|++ .++++++.+|.++||
T Consensus 293 ~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~---~~~~~~~~~~~~~~~spdg-----~~~~~~~~~g~~~l~ 363 (741)
T 2ecf_A 293 NW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAH---ETSPTWVPLHNSLRFLDDG-----SILWSSERTGFQHLY 363 (741)
T ss_dssp EE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEE---EECSSCCCCCSCCEECTTS-----CEEEEECTTSSCEEE
T ss_pred Ee-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEE---cCCCCcCCcCCceEECCCC-----eEEEEecCCCccEEE
Confidence 99 99999987653 5679999999887654222 1221 45689999998 788888999988888
Q ss_pred EeeecccccccCCCCCCcceeeeeccCCcccceEEEE-EeecCCCCCCCcceEE-EeeeCCC--cEEEeEec
Q 037555 230 SISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRM-AWKTHEKPKNSRTMQL-ASCGADN--TVRVFQVN 297 (298)
Q Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~l-~s~~~d~--~i~iw~~~ 297 (298)
.+.... . ... +..|...|.++ .|+|++ ..| ++++.++ .++||+++
T Consensus 364 ~~~~~~------------~-~~~---l~~~~~~v~~~~~~s~dg-------~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 364 RIDSKG------------K-AAA---LTHGNWSVDELLAVDEKA-------GLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp EECSSS------------C-EEE---SCCSSSCEEEEEEEETTT-------TEEEEEECSSCTTCBEEEEEE
T ss_pred EEcCCC------------C-eee---eeecceEEEeEeEEeCCC-------CEEEEEEeCCCCceEEEEEEE
Confidence 876321 2 222 44567778887 599999 555 5555555 89999875
No 139
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=6.2e-19 Score=143.36 Aligned_cols=217 Identities=12% Similarity=0.092 Sum_probs=144.7
Q ss_pred ccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce--eeeccccccccEEEEEEcCCCCEEEEEe-CCCeEEE
Q 037555 53 YGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK--AMGRLQSHSLTVTQIRFSHDDNLLLSVS-RDRQFSV 129 (298)
Q Consensus 53 ~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i 129 (298)
..+...+..++|+|+|+ |++++.. ..++.|.+|++.+++ .+..+..+...+..++|+|++++|++++ .++.+.+
T Consensus 36 ~~~~~~p~~~a~spdg~-l~~~~~~--~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v 112 (347)
T 3hfq_A 36 LAATQNPTYLALSAKDC-LYSVDKE--DDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEV 112 (347)
T ss_dssp EEECSCCCCEEECTTCE-EEEEEEE--TTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEE
T ss_pred eeccCCcceEEEccCCe-EEEEEec--CCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEE
Confidence 34556788999999999 5555321 136899999997665 3444455677888999999999888887 6899999
Q ss_pred EEeccCCCCccceeeeEEeec---------cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC-CCCCc
Q 037555 130 FAIQRTGTGEIDYQLIARQEA---------HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP-PFNSS 199 (298)
Q Consensus 130 wd~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~~~~ 199 (298)
|++..... ...+..+.. ....+.+++|+|+++.+++...++.|++||+.....+.....+. .....
T Consensus 113 ~~~~~~g~----~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~ 188 (347)
T 3hfq_A 113 MKIAADGA----LTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFG 188 (347)
T ss_dssp EEECTTSC----EEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCC
T ss_pred EEeCCCCC----eeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCC
Confidence 99964221 222332221 12348889999999966666678899999998322222221211 12346
Q ss_pred eEEEEEeeccccCCccEEE-EeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCc---ccceEEEEEeecCCCCC
Q 037555 200 VTALSWVGLDRQKNHGFLA-VGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFAC---HVAAVNRMAWKTHEKPK 275 (298)
Q Consensus 200 v~~~~~~~~~~~~~~~~l~-~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~ 275 (298)
+..++|+|++ .+++ ++..++.|.+|++...... ......+..... ....+..++|+|++
T Consensus 189 p~~~~~spdg-----~~l~v~~~~~~~v~v~~~~~~~g~---------~~~~~~~~~~~~~~~~~~~~~~i~~spdG--- 251 (347)
T 3hfq_A 189 PRHLVFSPDG-----QYAFLAGELSSQIASLKYDTQTGA---------FTQLGIVKTIPADYTAHNGAAAIRLSHDG--- 251 (347)
T ss_dssp EEEEEECTTS-----SEEEEEETTTTEEEEEEEETTTTE---------EEEEEEEESSCTTCCSCCEEEEEEECTTS---
T ss_pred CceEEECCCC-----CEEEEEeCCCCEEEEEEecCCCCc---------eEEeeeeeecCCCCCCCCcceeEEECCCC---
Confidence 7889999998 5444 4567889999999852100 011222221111 12568899999999
Q ss_pred CCcceEE-EeeeCCCcEEEeEec
Q 037555 276 NSRTMQL-ASCGADNTVRVFQVN 297 (298)
Q Consensus 276 ~~~~~~l-~s~~~d~~i~iw~~~ 297 (298)
++| ++...++.|.+|+++
T Consensus 252 ----~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 252 ----HFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp ----CEEEEEEETTTEEEEEEEC
T ss_pred ----CEEEEEeCCCCEEEEEEEC
Confidence 655 666678999999974
No 140
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.86 E-value=3.8e-20 Score=158.77 Aligned_cols=195 Identities=14% Similarity=0.087 Sum_probs=150.9
Q ss_pred EEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEe--ccCCCCcc
Q 037555 63 CCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAI--QRTGTGEI 140 (298)
Q Consensus 63 ~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~ 140 (298)
.|+|++.+++++ ..++.|.+||..+++.+.++..+.. +..++|+|+++++++++.|+.|.+||+ .+
T Consensus 144 ~~~p~~~~~vs~-----~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t------ 211 (543)
T 1nir_A 144 DLDLPNLFSVTL-----RDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKE------ 211 (543)
T ss_dssp CCCGGGEEEEEE-----GGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSS------
T ss_pred ccCCCCEEEEEE-----cCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCC------
Confidence 488988888887 4589999999999999888873333 889999999999999999999999999 44
Q ss_pred ceeeeEEeeccCCceEEEEEcc----CCCEEEEeeC-CCeEEEEEccCCcceeeeeecC-------CC-CCceEEEEEee
Q 037555 141 DYQLIARQEAHKRIIWSCSWNP----FGHEFATGSR-DKTVKIWAVENKSSVKQILALP-------PF-NSSVTALSWVG 207 (298)
Q Consensus 141 ~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~-------~~-~~~v~~~~~~~ 207 (298)
...+..+. +...+..++|+| +++++++++. ++.|.+||..+.+.+..+.... .| ...+.++.++|
T Consensus 212 -~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~ 289 (543)
T 1nir_A 212 -PTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASH 289 (543)
T ss_dssp -CEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECS
T ss_pred -CcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECC
Confidence 45566665 455679999999 9999999884 8999999999988777443210 02 23688999999
Q ss_pred ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEE-eee
Q 037555 208 LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLA-SCG 286 (298)
Q Consensus 208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~-s~~ 286 (298)
++. .++++...++.|.+||+.+.... ....+ .+...+.++.|+|++ ++|+ ++.
T Consensus 290 ~~~----~~~vs~~~~g~i~vvd~~~~~~l-----------~~~~i----~~~~~~~~~~~spdg-------~~l~va~~ 343 (543)
T 1nir_A 290 EHP----EFIVNVKETGKVLLVNYKDIDNL-----------TVTSI----GAAPFLHDGGWDSSH-------RYFMTAAN 343 (543)
T ss_dssp SSS----EEEEEETTTTEEEEEECTTSSSC-----------EEEEE----ECCSSCCCEEECTTS-------CEEEEEEG
T ss_pred CCC----EEEEEECCCCeEEEEEecCCCcc-----------eeEEe----ccCcCccCceECCCC-------CEEEEEec
Confidence 874 67888888999999999765211 11122 245567789999999 6554 555
Q ss_pred CCCcEEEeEec
Q 037555 287 ADNTVRVFQVN 297 (298)
Q Consensus 287 ~d~~i~iw~~~ 297 (298)
.+++|.+||+.
T Consensus 344 ~~~~v~v~D~~ 354 (543)
T 1nir_A 344 NSNKVAVIDSK 354 (543)
T ss_dssp GGTEEEEEETT
T ss_pred CCCeEEEEECC
Confidence 68999999974
No 141
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.86 E-value=3.6e-20 Score=164.49 Aligned_cols=232 Identities=11% Similarity=0.121 Sum_probs=159.7
Q ss_pred CCceeeeccCCCccccccc----CCCC----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC----
Q 037555 25 DAVPAVFTEPPIEDQLAWH----TLWP----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS---- 92 (298)
Q Consensus 25 ~~v~~~~~~~~~~~~~~~~----~~~~----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~---- 92 (298)
..+..+.++|. ...+... .+|+ ....+..+...+.+++|+|+|+.|+++. ++.|++|++.+
T Consensus 82 ~~v~~~~~spd-~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~------~~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFTQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVR------NHNLYIARGGKLGEG 154 (706)
T ss_dssp CCCEEEEETTT-TEEEEEETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEE------TTEEEEEECBCTTSC
T ss_pred cCceeEEECCC-CeEEEEECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEE------CCeEEEEecCccccc
Confidence 45888888855 4333332 2342 3455666778899999999999999863 68999999998
Q ss_pred -ceeeecccccccc--------------EEEEEEcCCCCEEEEEe---------------------------------CC
Q 037555 93 -WKAMGRLQSHSLT--------------VTQIRFSHDDNLLLSVS---------------------------------RD 124 (298)
Q Consensus 93 -~~~~~~~~~~~~~--------------v~~~~~~~~~~~l~~~~---------------------------------~d 124 (298)
++.......+... +.++.|+|||++|++++ .+
T Consensus 155 ~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~ 234 (706)
T 2z3z_A 155 MSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH 234 (706)
T ss_dssp CCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred CCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence 7766544433332 48899999999999987 44
Q ss_pred CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCC-----eEEEEEccCCcceeeeeecCCCC--
Q 037555 125 RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDK-----TVKIWAVENKSSVKQILALPPFN-- 197 (298)
Q Consensus 125 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~wd~~~~~~~~~~~~~~~~~-- 197 (298)
..|++||+.... ...+.....+...+..++|+|+++.|++++.++ .|++||+.+++....+.... ..
T Consensus 235 ~~l~~~d~~~~~-----~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~-~~~~ 308 (706)
T 2z3z_A 235 VTVGIYHLATGK-----TVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVET-DKHY 308 (706)
T ss_dssp EEEEEEETTTTE-----EEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEE-CSSC
T ss_pred eEEEEEECCCCc-----eEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEcc-CCCe
Confidence 679999987632 111111124667899999999999999987665 89999999874333222111 11
Q ss_pred -CceEEEEEee--ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEE-EEeecCCC
Q 037555 198 -SSVTALSWVG--LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNR-MAWKTHEK 273 (298)
Q Consensus 198 -~~v~~~~~~~--~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~ 273 (298)
..+.+++|+| ++ .+++++..++.++||.+.... ..... +..+...+.+ ++|+|++
T Consensus 309 ~~~~~~~~~sp~~dg-----~~l~~~~~~g~~~l~~~~~~~------------~~~~~---l~~~~~~v~~~~~~spdg- 367 (706)
T 2z3z_A 309 VEPLHPLTFLPGSNN-----QFIWQSRRDGWNHLYLYDTTG------------RLIRQ---VTKGEWEVTNFAGFDPKG- 367 (706)
T ss_dssp CCCCSCCEECTTCSS-----EEEEEECTTSSCEEEEEETTS------------CEEEE---CCCSSSCEEEEEEECTTS-
T ss_pred ECccCCceeecCCCC-----EEEEEEccCCccEEEEEECCC------------CEEEe---cCCCCeEEEeeeEEcCCC-
Confidence 2346789999 88 789999999999999987221 33333 3346667776 7999998
Q ss_pred CCCCcceEEEe-eeCCC--cEEEeEe
Q 037555 274 PKNSRTMQLAS-CGADN--TVRVFQV 296 (298)
Q Consensus 274 ~~~~~~~~l~s-~~~d~--~i~iw~~ 296 (298)
..|+. ++.++ .+.||.+
T Consensus 368 ------~~l~~~~~~~~~~~~~l~~~ 387 (706)
T 2z3z_A 368 ------TRLYFESTEASPLERHFYCI 387 (706)
T ss_dssp ------SEEEEEESSSCTTCBEEEEE
T ss_pred ------CEEEEEecCCCCceEEEEEE
Confidence 55554 44444 2445443
No 142
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.86 E-value=2.7e-19 Score=144.45 Aligned_cols=210 Identities=6% Similarity=0.016 Sum_probs=147.7
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee-eeccccccccEEEEEEcCCCCEEEEEeCCC--
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA-MGRLQSHSLTVTQIRFSHDDNLLLSVSRDR-- 125 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-- 125 (298)
...+..+...+ +++|+|+++++++++. .++.|.+||+.+++. ...+..+..+..+++|+|++++++++..++
T Consensus 33 ~~~~~~~~~~~-~~~~s~dg~~l~~~~~----~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~ 107 (331)
T 3u4y_A 33 LNQITLGYDFV-DTAITSDCSNVVVTSD----FCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHP 107 (331)
T ss_dssp EEEEECCCCEE-EEEECSSSCEEEEEES----TTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSS
T ss_pred eeeEEccCCcc-eEEEcCCCCEEEEEeC----CCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCc
Confidence 34444556667 9999999997777753 478999999998887 666666666665599999999998655553
Q ss_pred -eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEe-eCCCe-EEEEEccCCcceeee--eecCCCCCce
Q 037555 126 -QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATG-SRDKT-VKIWAVENKSSVKQI--LALPPFNSSV 200 (298)
Q Consensus 126 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~-i~~wd~~~~~~~~~~--~~~~~~~~~v 200 (298)
.|.+||+.. ...+..+.. ......++|+|++++++++ ..++. |.+|++.....+... ..+ .....+
T Consensus 108 ~~i~v~d~~~-------~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~ 178 (331)
T 3u4y_A 108 FNMQSYSFLK-------NKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI-SGGTRP 178 (331)
T ss_dssp CEEEEEETTT-------TEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE-CSSSSE
T ss_pred ccEEEEECCC-------CCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc-cCCCCc
Confidence 899999986 444554443 3456899999999855554 55688 999999864433211 122 234567
Q ss_pred EEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcce
Q 037555 201 TALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTM 280 (298)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 280 (298)
..++|+|++. .+++++..++.|++||+.+++.. ..+..+. ....+..++|+|++ +
T Consensus 179 ~~~~~spdg~----~l~v~~~~~~~v~v~d~~~~~~~----------~~~~~~~----~~~~~~~~~~spdg-------~ 233 (331)
T 3u4y_A 179 FNITFTPDGN----FAFVANLIGNSIGILETQNPENI----------TLLNAVG----TNNLPGTIVVSRDG-------S 233 (331)
T ss_dssp EEEEECTTSS----EEEEEETTTTEEEEEECSSTTSC----------EEEEEEE----CSSCCCCEEECTTS-------S
T ss_pred cceEECCCCC----EEEEEeCCCCeEEEEECCCCccc----------ceeeecc----CCCCCceEEECCCC-------C
Confidence 8999999982 24455556899999999876320 1133332 23567889999999 6
Q ss_pred EE-EeeeCCCcEEEeEec
Q 037555 281 QL-ASCGADNTVRVFQVN 297 (298)
Q Consensus 281 ~l-~s~~~d~~i~iw~~~ 297 (298)
+| ++...++.|.+||+.
T Consensus 234 ~l~v~~~~~~~i~~~d~~ 251 (331)
T 3u4y_A 234 TVYVLTESTVDVFNFNQL 251 (331)
T ss_dssp EEEEECSSEEEEEEEETT
T ss_pred EEEEEEcCCCEEEEEECC
Confidence 44 555568889999864
No 143
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=9.7e-19 Score=142.28 Aligned_cols=238 Identities=11% Similarity=0.065 Sum_probs=164.4
Q ss_pred ccceeeeecCcccccccCCCCCceeeeccCCCcc-ccccc------CCC-----CceEEeccCCC---------ceEEEE
Q 037555 5 TRETVERHGNDGLDTLESVPDAVPAVFTEPPIED-QLAWH------TLW-----PESHKLYGHGN---------ELFSLC 63 (298)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~------~~~-----~~~~~~~~h~~---------~v~~~~ 63 (298)
.+..++..+++.+..+... ..+..+.+.| .+. .++.. .+| ..+..+..+.. .+.+++
T Consensus 70 ~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (353)
T 3vgz_A 70 VVYRLDPVTLEVTQAIHND-LKPFGATINN-TTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELV 147 (353)
T ss_dssp EEEEECTTTCCEEEEEEES-SCCCSEEEET-TTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEE
T ss_pred cEEEEcCCCCeEEEEEecC-CCcceEEECC-CCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEE
Confidence 4555666666666666543 2345556663 333 22222 122 12344443332 278999
Q ss_pred EcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcccee
Q 037555 64 CDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQ 143 (298)
Q Consensus 64 ~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 143 (298)
|+|+++.+++++. ..++.|.+||..+++.+..+..+...+.+++|+|+++++++++.++.|.+||+.+ ..
T Consensus 148 ~s~dg~~l~~~~~---~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~-------~~ 217 (353)
T 3vgz_A 148 ADDATNTVYISGI---GKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTAD-------NK 217 (353)
T ss_dssp EETTTTEEEEEEE---SSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTT-------TE
T ss_pred ECCCCCEEEEEec---CCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCC-------Ce
Confidence 9999998888764 3478999999999998887775666688999999999999999999999999886 34
Q ss_pred eeEEeec----cCCceEEEEEccCCCEEEEeeC-CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEE-
Q 037555 144 LIARQEA----HKRIIWSCSWNPFGHEFATGSR-DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFL- 217 (298)
Q Consensus 144 ~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l- 217 (298)
....+.. +...+..++|+|+++++++++. ++.|.+||+.+++....+. . . . ...++|+|++ .++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~--~-~-~~~~~~s~dg-----~~l~ 287 (353)
T 3vgz_A 218 ILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA-A--P-E-SLAVLFNPAR-----NEAY 287 (353)
T ss_dssp EEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE-C--S-S-CCCEEEETTT-----TEEE
T ss_pred EEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE-c--C-C-CceEEECCCC-----CEEE
Confidence 4444432 4556788999999997777665 5899999999888766432 1 1 1 2569999998 544
Q ss_pred EEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCC
Q 037555 218 AVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD 288 (298)
Q Consensus 218 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d 288 (298)
++...++.|.+||..++ +....+. ....+.+++|+|++ ++|+.+..+
T Consensus 288 v~~~~~~~v~~~d~~~~-------------~~~~~~~----~~~~~~~~~~s~dg-------~~l~v~~~~ 334 (353)
T 3vgz_A 288 VTHRQAGKVSVIDAKSY-------------KVVKTFD----TPTHPNSLALSADG-------KTLYVSVKQ 334 (353)
T ss_dssp EEETTTTEEEEEETTTT-------------EEEEEEE----CCSEEEEEEECTTS-------CEEEEEEEC
T ss_pred EEECCCCeEEEEECCCC-------------eEEEEEe----cCCCCCeEEEcCCC-------CEEEEEEcc
Confidence 45557899999999876 4444443 23467899999999 655544433
No 144
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.85 E-value=4.7e-19 Score=144.15 Aligned_cols=207 Identities=9% Similarity=0.021 Sum_probs=153.5
Q ss_pred CCCceEEEEEcCCCCEEEeEeccCC--CCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEE-EEeCCCeEEEEE
Q 037555 55 HGNELFSLCCDHQGKLVASSCKAQS--TAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLL-SVSRDRQFSVFA 131 (298)
Q Consensus 55 h~~~v~~~~~s~~~~~l~~~~~~~~--~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd 131 (298)
....+..++|+|+++.+++++.+.. ..++.|.+||..+++.+..+.. ...+..++|+|++++++ +...++.|.+||
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d 117 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID 117 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence 3456889999999999988864210 0268999999999988877763 34578899999999555 455579999999
Q ss_pred eccCCCCccceeeeEEeeccCC---------ceEEEEEccCCCEEEEee--CCCeEEEEEccCCcceeeeeecCCCCCce
Q 037555 132 IQRTGTGEIDYQLIARQEAHKR---------IIWSCSWNPFGHEFATGS--RDKTVKIWAVENKSSVKQILALPPFNSSV 200 (298)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~---------~v~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~v 200 (298)
..+ .+.+..+..+.. .+..++|+|+++++++++ .++.|.+||..+.+... .+..+...+
T Consensus 118 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~---~~~~~~~~~ 187 (353)
T 3vgz_A 118 AKT-------GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKT---AIQNTGKMS 187 (353)
T ss_dssp TTT-------CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEE---EECCCCTTC
T ss_pred CCC-------CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEE---EecCCCCcc
Confidence 986 334444443322 268899999999887776 47899999999887766 444344557
Q ss_pred EEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeecc-CCcccceEEEEEeecCCCCCCCcc
Q 037555 201 TALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDP-FACHVAAVNRMAWKTHEKPKNSRT 279 (298)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~ 279 (298)
.+++|+|++ .++++++.++.|.+||..++ +....+.. ..++...+..++|+|++
T Consensus 188 ~~~~~s~dg-----~~l~~~~~~~~i~~~d~~~~-------------~~~~~~~~~~~~~~~~~~~~~~s~dg------- 242 (353)
T 3vgz_A 188 TGLALDSEG-----KRLYTTNADGELITIDTADN-------------KILSRKKLLDDGKEHFFINISLDTAR------- 242 (353)
T ss_dssp CCCEEETTT-----TEEEEECTTSEEEEEETTTT-------------EEEEEEECCCSSSCCCEEEEEEETTT-------
T ss_pred ceEEECCCC-----CEEEEEcCCCeEEEEECCCC-------------eEEEEEEcCCCCCCcccceEEECCCC-------
Confidence 889999998 78888888999999999876 44333321 22355678899999998
Q ss_pred eEE-EeeeCCCcEEEeEec
Q 037555 280 MQL-ASCGADNTVRVFQVN 297 (298)
Q Consensus 280 ~~l-~s~~~d~~i~iw~~~ 297 (298)
.+| ++...++.|.+||+.
T Consensus 243 ~~l~~~~~~~~~v~~~d~~ 261 (353)
T 3vgz_A 243 QRAFITDSKAAEVLVVDTR 261 (353)
T ss_dssp TEEEEEESSSSEEEEEETT
T ss_pred CEEEEEeCCCCEEEEEECC
Confidence 554 444556999999974
No 145
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.85 E-value=3.7e-20 Score=165.31 Aligned_cols=201 Identities=12% Similarity=0.132 Sum_probs=147.5
Q ss_pred CCceEEEEEcCCCCEEEeEeccCCCCce-----EEEEEEcCCceeeecccccc------------------------ccE
Q 037555 56 GNELFSLCCDHQGKLVASSCKAQSTAAA-----EIWLWEVGSWKAMGRLQSHS------------------------LTV 106 (298)
Q Consensus 56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~-----~i~vw~~~~~~~~~~~~~~~------------------------~~v 106 (298)
...|.+++|+|||++|++++. .++ .|++||+.+++....+..+. ..+
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~----~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 111 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRG----KDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGI 111 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEEC----CSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEES
T ss_pred CCCCCCceEecCCCEEEEEec----cCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCc
Confidence 457999999999999999964 144 99999999887766555433 337
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcc
Q 037555 107 TQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSS 186 (298)
Q Consensus 107 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~ 186 (298)
.+++|+|||++|++++. +.|++||+..... .....+..+...+..++|+|+|++|++++. +.|++||+.+++.
T Consensus 112 ~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~-----~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~ 184 (741)
T 2ecf_A 112 VDYQWSPDAQRLLFPLG-GELYLYDLKQEGK-----AAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQ 184 (741)
T ss_dssp CCCEECTTSSEEEEEET-TEEEEEESSSCST-----TSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEE
T ss_pred ceeEECCCCCEEEEEeC-CcEEEEECCCCCc-----ceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCE
Confidence 89999999999999886 9999999986310 023345567788999999999999999884 6899999988765
Q ss_pred eeeeeecCCCCCc----------------eEEEEEeeccccCCccEEEEeecCC--------------------------
Q 037555 187 VKQILALPPFNSS----------------VTALSWVGLDRQKNHGFLAVGMESG-------------------------- 224 (298)
Q Consensus 187 ~~~~~~~~~~~~~----------------v~~~~~~~~~~~~~~~~l~~g~~dg-------------------------- 224 (298)
.. ....+... +.+++|+|++ .+|++++.|+
T Consensus 185 ~~---~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-----~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~ 256 (741)
T 2ecf_A 185 MQ---LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-----SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAA 256 (741)
T ss_dssp EE---CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-----SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBT
T ss_pred EE---eccCCccceeccccceeeeeccccccceEECCCC-----CEEEEEEEcCCCCceEecCCCCCCcccceEeecCCC
Confidence 43 22222221 4789999999 6788876654
Q ss_pred -------cEEEEEeee-cccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC-----CCcE
Q 037555 225 -------VIELWSISV-NRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA-----DNTV 291 (298)
Q Consensus 225 -------~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~-----d~~i 291 (298)
.|++||+.+ ++ ... +.....|...+.+++| ||+ .+|++++. +..|
T Consensus 257 g~~~~~~~l~~~d~~~~~~-------------~~~-~~~~~~~~~~~~~~~~-pDg-------~~l~~~~~~~~~~~~~i 314 (741)
T 2ecf_A 257 GDANVQVKLGVISPAEQAQ-------------TQW-IDLGKEQDIYLARVNW-RDP-------QHLSFQRQSRDQKKLDL 314 (741)
T ss_dssp TSCCCEEEEEEECSSTTCC-------------CEE-ECCCSCSSEEEEEEEE-EET-------TEEEEEEEETTSSEEEE
T ss_pred CCCCCeeEEEEEECCCCCc-------------eEE-ecCCCCcceEEEEEEe-CCC-------CEEEEEEecccCCeEEE
Confidence 677788765 42 211 1111247788999999 999 67776543 5678
Q ss_pred EEeEec
Q 037555 292 RVFQVN 297 (298)
Q Consensus 292 ~iw~~~ 297 (298)
++||+.
T Consensus 315 ~~~d~~ 320 (741)
T 2ecf_A 315 VEVTLA 320 (741)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 888863
No 146
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.85 E-value=7.5e-20 Score=162.87 Aligned_cols=253 Identities=10% Similarity=0.018 Sum_probs=166.4
Q ss_pred ccccceeeeecCcccccccCCCC---CceeeeccCCCcccccccC---------------CCC----ceEEec---cCCC
Q 037555 3 AATRETVERHGNDGLDTLESVPD---AVPAVFTEPPIEDQLAWHT---------------LWP----ESHKLY---GHGN 57 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~~---------------~~~----~~~~~~---~h~~ 57 (298)
++.++.++..+|+....+..|.. .|..+.++ |+++.++... +|+ ....+. +|..
T Consensus 36 dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~S-pDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~ 114 (723)
T 1xfd_A 36 KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEIS-PDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNA 114 (723)
T ss_dssp SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEEC-TTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSC
T ss_pred CCCEEEEECCCCcEEEEeccccccccccceEEEC-CCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccc
Confidence 34567778888888888877765 38888998 5666665441 442 123333 3444
Q ss_pred ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccE------------------EEEEEcCCCCEEE
Q 037555 58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTV------------------TQIRFSHDDNLLL 119 (298)
Q Consensus 58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v------------------~~~~~~~~~~~l~ 119 (298)
.+..++|||||+.||.++ ++.|++|++.+++.......+...+ .+++|+|||+.|+
T Consensus 115 ~~~~~~~SPdG~~la~~~------~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la 188 (723)
T 1xfd_A 115 KLQYAGWGPKGQQLIFIF------ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLA 188 (723)
T ss_dssp CCSBCCBCSSTTCEEEEE------TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEE
T ss_pred cccccEECCCCCEEEEEE------CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEE
Confidence 588999999999999985 4789999999887665544433333 7899999999999
Q ss_pred EEeCCC----------------------------------eEEEEEeccCCCCccceeeeEEeec------cCCceEEEE
Q 037555 120 SVSRDR----------------------------------QFSVFAIQRTGTGEIDYQLIARQEA------HKRIIWSCS 159 (298)
Q Consensus 120 ~~~~dg----------------------------------~i~iwd~~~~~~~~~~~~~~~~~~~------~~~~v~~~~ 159 (298)
.++.++ .|++||+.... ....+.. +...+..++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~-------~~~~l~~~~~~~~~~~~~~~~~ 261 (723)
T 1xfd_A 189 YAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT-------HDLEMMPPDDPRMREYYITMVK 261 (723)
T ss_dssp EEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC-------CCEECCCCCCGGGSSEEEEEEE
T ss_pred EEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc-------eeEEeeCCccCCCccceeEEEE
Confidence 887653 78899987632 2223333 356789999
Q ss_pred EccCCCEEEEeeC----CCeEEEEEccCCcceeeeeecCCCCCce----EEEEEeeccccCCccEEEE--eecCC-----
Q 037555 160 WNPFGHEFATGSR----DKTVKIWAVENKSSVKQILALPPFNSSV----TALSWVGLDRQKNHGFLAV--GMESG----- 224 (298)
Q Consensus 160 ~~~~~~~l~~~~~----dg~i~~wd~~~~~~~~~~~~~~~~~~~v----~~~~~~~~~~~~~~~~l~~--g~~dg----- 224 (298)
|+|+++++++... +..|++||+.+++....+.. .+...+ ..++|+|++ +.|+. +..++
T Consensus 262 ~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~--~~~~~~~~~~~~~~~spdg-----~~l~~~~~~~~~~~~~~ 334 (723)
T 1xfd_A 262 WATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED--ESEAWLHRQNEEPVFSKDG-----RKFFFIRAIPQGGRGKF 334 (723)
T ss_dssp ESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE--ECSSCCCCCCCCCEECTTS-----CSEEEEEEECCSSSSCE
T ss_pred EeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEe--ccCCEEeccCCCceEcCCC-----CeEEEEEecccCCCcce
Confidence 9999998877653 35799999998776542211 122333 378999998 44443 45666
Q ss_pred -cEEEEEe-eecccccccCCCCCCcceeeeeccCCcccceEE-EEEeecCCCCCCCcceEEEeeeCC---CcEEEeEec
Q 037555 225 -VIELWSI-SVNRTNDVSTPAPSTANIIIRFDPFACHVAAVN-RMAWKTHEKPKNSRTMQLASCGAD---NTVRVFQVN 297 (298)
Q Consensus 225 -~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~l~s~~~d---~~i~iw~~~ 297 (298)
.|++||. ..+.. .+... +..+...+. .++|+|++ ..|+..+.+ +.+++|+++
T Consensus 335 ~~l~~~d~~~~~~~-----------~~~~~---l~~~~~~~~~~~~~spdg-------~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 335 YHITVSSSQPNSSN-----------DNIQS---ITSGDWDVTKILAYDEKG-------NKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp EEEEEECSSCCSSS-----------CCCCB---SCCSSSCEEEEEEEETTT-------TEEEEEESSSCTTCCEEEEEC
T ss_pred eEEEEEeccCCCCc-----------cceeE---eecCCeEEEeeeEEcCCC-------CEEEEEEcCCCCcceEEEEEe
Confidence 4556662 22210 00112 222233344 47999999 677655544 789999875
No 147
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.84 E-value=3.8e-19 Score=143.64 Aligned_cols=195 Identities=11% Similarity=0.080 Sum_probs=142.9
Q ss_pred ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc-c----cccEEEEEEcCCCCEEEEEe----------
Q 037555 58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS-H----SLTVTQIRFSHDDNLLLSVS---------- 122 (298)
Q Consensus 58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~-~----~~~v~~~~~~~~~~~l~~~~---------- 122 (298)
.+..++|+|+++.+++++ ..++.|.+||+.+++.+..+.. + ...+..++|+|+++++++++
T Consensus 35 ~~~~~~~s~dg~~l~v~~----~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~ 110 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATV----NKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHF 110 (337)
T ss_dssp CCCCEEECTTSSEEEEEE----TTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCE
T ss_pred CccceEEcCCCCEEEEEe----CCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccc
Confidence 478999999998776654 3478999999998887766552 1 23577899999999888886
Q ss_pred --CCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC------
Q 037555 123 --RDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP------ 194 (298)
Q Consensus 123 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~------ 194 (298)
.++.|.+||+.. ......+.. ...+..++|+|++++|+++ ++.|.+||+.+++....+....
T Consensus 111 ~~~~~~i~v~d~~~-------~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 180 (337)
T 1pby_B 111 EVQPTRVALYDAET-------LSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETY 180 (337)
T ss_dssp EECCCEEEEEETTT-------TEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTB
T ss_pred cccCceEEEEECCC-------CcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCce
Confidence 579999999976 344444443 4557889999999988887 6889999998766543221100
Q ss_pred ---------------------------------------------------------CCCCceEEEEEeeccccCCccEE
Q 037555 195 ---------------------------------------------------------PFNSSVTALSWVGLDRQKNHGFL 217 (298)
Q Consensus 195 ---------------------------------------------------------~~~~~v~~~~~~~~~~~~~~~~l 217 (298)
.+...+.+++|+|++ .++
T Consensus 181 ~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg-----~~l 255 (337)
T 1pby_B 181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK-----TRA 255 (337)
T ss_dssp CCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTS-----SEE
T ss_pred eCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCC-----CEE
Confidence 011234468888887 677
Q ss_pred EEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 218 AVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 218 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+++ ++.|++||+.++ +....+. ....+.+++|+|++ .+|++++.++.|++||+.
T Consensus 256 ~~~--~~~v~~~d~~~~-------------~~~~~~~----~~~~~~~~~~s~dg-------~~l~~~~~~~~i~v~d~~ 309 (337)
T 1pby_B 256 FGA--YNVLESFDLEKN-------------ASIKRVP----LPHSYYSVNVSTDG-------STVWLGGALGDLAAYDAE 309 (337)
T ss_dssp EEE--ESEEEEEETTTT-------------EEEEEEE----CSSCCCEEEECTTS-------CEEEEESBSSEEEEEETT
T ss_pred EEe--CCeEEEEECCCC-------------cCcceec----CCCceeeEEECCCC-------CEEEEEcCCCcEEEEECc
Confidence 777 689999998765 4444432 23457889999999 788888889999999974
No 148
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.84 E-value=2e-20 Score=166.57 Aligned_cols=200 Identities=11% Similarity=0.095 Sum_probs=143.8
Q ss_pred ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccc---cEEEEEEcCCCCEEEEEeCC---------C
Q 037555 58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSL---TVTQIRFSHDDNLLLSVSRD---------R 125 (298)
Q Consensus 58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------g 125 (298)
.+.+++|+|+|++++++ .|+.|++||+.+++....+..|.. .|.+++|+|||++|++++.+ +
T Consensus 18 ~~~~~~~spdg~~~~~~------~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~ 91 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYRE------QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTG 91 (723)
T ss_dssp CCCCCCBSSSSCBCCCC------SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCS
T ss_pred cccccEEcCCCcEEEEe------CCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeeccee
Confidence 46789999999977653 378999999999888777776654 48999999999999998764 7
Q ss_pred eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCC-------
Q 037555 126 QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNS------- 198 (298)
Q Consensus 126 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~------- 198 (298)
.+.+||+..+. ...+.....|...+..++|+|+|+.|++++. +.|++||+.+++... ....+..
T Consensus 92 ~i~~~d~~~~~-----~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~---~~~~~~~~~~~~g~ 162 (723)
T 1xfd_A 92 YYVLSKIPHGD-----PQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIR---VVSTGKEGVIYNGL 162 (723)
T ss_dssp EEEEEESSSCC-----CEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEE---EECCCBTTTEEEEE
T ss_pred eEEEEECCCCc-----eEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEE---EecCCCCCceECcc
Confidence 88899998643 1112222334455889999999999999886 789999999876654 2222222
Q ss_pred -----------ceEEEEEeeccccCCccEEEEeecCC----------------------------------cEEEEEeee
Q 037555 199 -----------SVTALSWVGLDRQKNHGFLAVGMESG----------------------------------VIELWSISV 233 (298)
Q Consensus 199 -----------~v~~~~~~~~~~~~~~~~l~~g~~dg----------------------------------~i~vwd~~~ 233 (298)
.+.+++|+|++ +.|++++.++ .|++||+.+
T Consensus 163 ~~~v~~ee~~~~~~~~~~SpDg-----~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~ 237 (723)
T 1xfd_A 163 SDWLYEEEILKTHIAHWWSPDG-----TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG 237 (723)
T ss_dssp CCHHHHHTTSSSSEEEEECTTS-----SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS
T ss_pred cceeEEEEeccCcceEEECCCC-----CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC
Confidence 23789999999 6788776542 677777765
Q ss_pred cccccccCCCCCCcceeeeecc---CCcccceEEEEEeecCCCCCCCcceEEEeeeC----CCcEEEeEec
Q 037555 234 NRTNDVSTPAPSTANIIIRFDP---FACHVAAVNRMAWKTHEKPKNSRTMQLASCGA----DNTVRVFQVN 297 (298)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~----d~~i~iw~~~ 297 (298)
+. ....+.. ...+...+.+++|+||+ .+|++... +..|++||+.
T Consensus 238 ~~-------------~~~~l~~~~~~~~~~~~~~~~~~SpDg-------~~l~~~~~~~~~~~~i~~~d~~ 288 (723)
T 1xfd_A 238 PT-------------HDLEMMPPDDPRMREYYITMVKWATST-------KVAVTWLNRAQNVSILTLCDAT 288 (723)
T ss_dssp SC-------------CCEECCCCCCGGGSSEEEEEEEESSSS-------EEEEEEEETTSCEEEEEEEETT
T ss_pred Cc-------------eeEEeeCCccCCCccceeEEEEEeCCC-------eEEEEEEcCCCCeEEEEEEeCC
Confidence 52 1112110 11246789999999999 77766643 3578889863
No 149
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.83 E-value=6.2e-19 Score=162.80 Aligned_cols=193 Identities=9% Similarity=0.065 Sum_probs=155.2
Q ss_pred CCCceEEEEEc-CCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccc-cEEEEEEcCCCCEEEEEeCCCeEE-EEE
Q 037555 55 HGNELFSLCCD-HQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSL-TVTQIRFSHDDNLLLSVSRDRQFS-VFA 131 (298)
Q Consensus 55 h~~~v~~~~~s-~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~-iwd 131 (298)
|...+.+++|+ |+|+.|++++ ++.|++|++.+++... +..|.. .+..++|+ +++.|+.++.++.+. +|+
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~------~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d 365 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVS------RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYD 365 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEE------TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEE
T ss_pred cccccceeeecCCCCCEEEEEE------cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEE
Confidence 34478999999 9999999885 6789999998776544 556776 89999999 999999999888888 888
Q ss_pred eccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecccc
Q 037555 132 IQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQ 211 (298)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (298)
+... . ...+..|...+..++|+|++++|++++.++.|++||+.+++... ....+...+.+++|+|++
T Consensus 366 ~~~~-------~-~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~---~~~~~~~~v~~~~~SpDG-- 432 (1045)
T 1k32_A 366 YRTG-------K-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV---IERSREAMITDFTISDNS-- 432 (1045)
T ss_dssp TTTC-------C-EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCCEEECTTS--
T ss_pred CCCC-------C-ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEE---eccCCCCCccceEECCCC--
Confidence 7752 2 23334677889999999999999999999999999999887655 333577888999999999
Q ss_pred CCccEEEEeecCC----------cEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceE
Q 037555 212 KNHGFLAVGMESG----------VIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQ 281 (298)
Q Consensus 212 ~~~~~l~~g~~dg----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 281 (298)
.+|++++.++ .|++||+.++ . ... +..|...+..++|+|++ .+
T Consensus 433 ---~~la~~~~~~~~~~~~~~~~~i~l~d~~~g-------------~-~~~---l~~~~~~~~~~~~spdG-------~~ 485 (1045)
T 1k32_A 433 ---RFIAYGFPLKHGETDGYVMQAIHVYDMEGR-------------K-IFA---ATTENSHDYAPAFDADS-------KN 485 (1045)
T ss_dssp ---CEEEEEEEECSSTTCSCCEEEEEEEETTTT-------------E-EEE---CSCSSSBEEEEEECTTS-------CE
T ss_pred ---CeEEEEecCccccccCCCCCeEEEEECCCC-------------c-EEE---eeCCCcccCCceEcCCC-------CE
Confidence 6787776544 8999999765 2 222 44577788899999999 78
Q ss_pred EEeeeCCCcEEEeE
Q 037555 282 LASCGADNTVRVFQ 295 (298)
Q Consensus 282 l~s~~~d~~i~iw~ 295 (298)
|++++.++..++|+
T Consensus 486 l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 486 LYYLSYRSLDPSPD 499 (1045)
T ss_dssp EEEEESCCCCCEEC
T ss_pred EEEEecccCCcCcc
Confidence 88888887777775
No 150
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.83 E-value=1.8e-18 Score=153.64 Aligned_cols=253 Identities=11% Similarity=0.074 Sum_probs=164.0
Q ss_pred ccceeeeecCcccccccCCCCCceeeeccCCCccccccc-----CCCCc---------eEE-eccCCCc-----------
Q 037555 5 TRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH-----TLWPE---------SHK-LYGHGNE----------- 58 (298)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~---------~~~-~~~h~~~----------- 58 (298)
.+..++..+++.. .+..+...+..+.++ |+++.++.. .+|+. ... ...+...
T Consensus 102 ~i~~~d~~~~~~~-~l~~~~~~~~~~~~S-pdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee 179 (706)
T 2z3z_A 102 GLVGFDMLARKVT-YLFDTNEETASLDFS-PVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQRE 179 (706)
T ss_dssp EEEEEETTTTEEE-EEECCTTCCTTCEEC-TTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGC
T ss_pred EEEEEECCCCceE-EccCCcccccCCcCC-CCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhh
Confidence 3455555565443 344456667777888 556555543 12221 112 2222222
Q ss_pred ---eEEEEEcCCCCEEEeEeccCC----------------------------CCceEEEEEEcCCceeeeccc--ccccc
Q 037555 59 ---LFSLCCDHQGKLVASSCKAQS----------------------------TAAAEIWLWEVGSWKAMGRLQ--SHSLT 105 (298)
Q Consensus 59 ---v~~~~~s~~~~~l~~~~~~~~----------------------------~~d~~i~vw~~~~~~~~~~~~--~~~~~ 105 (298)
+.++.|+|||++|++++.+.+ ..+..|++||+.+++...... .|...
T Consensus 180 ~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 259 (706)
T 2z3z_A 180 FGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKF 259 (706)
T ss_dssp TTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCE
T ss_pred cCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCcee
Confidence 489999999999999863210 135789999999887654432 46778
Q ss_pred EEEEEEcCCCCEEEEEeCCC-----eEEEEEeccCCCCccceeeeEEeeccCC---ceEEEEEcc--CCCEEEEeeCCCe
Q 037555 106 VTQIRFSHDDNLLLSVSRDR-----QFSVFAIQRTGTGEIDYQLIARQEAHKR---IIWSCSWNP--FGHEFATGSRDKT 175 (298)
Q Consensus 106 v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~--~~~~l~~~~~dg~ 175 (298)
+..++|+|||+.|++++.++ .|.+||+.++.. ...+.. ..+.. .+..+.|+| +++++++++.|+.
T Consensus 260 ~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~----~~~~~~-~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~ 334 (706)
T 2z3z_A 260 LTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF----VRTLFV-ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGW 334 (706)
T ss_dssp EEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE----EEEEEE-EECSSCCCCCSCCEECTTCSSEEEEEECTTSS
T ss_pred EeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce----eeEEEE-ccCCCeECccCCceeecCCCCEEEEEEccCCc
Confidence 99999999999999888776 899999876311 111111 11222 246789999 9999999999999
Q ss_pred EEEEEcc-CCcceeeeeecCCCCCceEE-EEEeeccccCCccEEE-EeecCC----cEEEEEeeecccccccCCCCCCcc
Q 037555 176 VKIWAVE-NKSSVKQILALPPFNSSVTA-LSWVGLDRQKNHGFLA-VGMESG----VIELWSISVNRTNDVSTPAPSTAN 248 (298)
Q Consensus 176 i~~wd~~-~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~l~-~g~~dg----~i~vwd~~~~~~~~~~~~~~~~~~ 248 (298)
+++|++. ++.... .+..+...+.. ++|+|++ ..|+ ++..++ .|+.||+.++ .
T Consensus 335 ~~l~~~~~~~~~~~---~l~~~~~~v~~~~~~spdg-----~~l~~~~~~~~~~~~~l~~~d~~~~-------------~ 393 (706)
T 2z3z_A 335 NHLYLYDTTGRLIR---QVTKGEWEVTNFAGFDPKG-----TRLYFESTEASPLERHFYCIDIKGG-------------K 393 (706)
T ss_dssp CEEEEEETTSCEEE---ECCCSSSCEEEEEEECTTS-----SEEEEEESSSCTTCBEEEEEETTCC-------------C
T ss_pred cEEEEEECCCCEEE---ecCCCCeEEEeeeEEcCCC-----CEEEEEecCCCCceEEEEEEEcCCC-------------C
Confidence 9999886 444444 55556667776 7999998 4554 455554 4555555443 1
Q ss_pred eeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCC----CcEEEeEec
Q 037555 249 IIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD----NTVRVFQVN 297 (298)
Q Consensus 249 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d----~~i~iw~~~ 297 (298)
...+ .|...+.+++|+|++ .+|+....+ +.|++||+.
T Consensus 394 -~~~l----~~~~~~~~~~~spdg-------~~l~~~~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 394 -TKDL----TPESGMHRTQLSPDG-------SAIIDIFQSPTVPRKVTVTNIG 434 (706)
T ss_dssp -CEES----CCSSSEEEEEECTTS-------SEEEEEEECSSCSCEEEEEESS
T ss_pred -ceec----cCCCceEEEEECCCC-------CEEEEEecCCCCCcEEEEEECC
Confidence 1222 155678899999999 666655433 569999864
No 151
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.82 E-value=2.3e-18 Score=159.07 Aligned_cols=231 Identities=8% Similarity=0.004 Sum_probs=166.7
Q ss_pred cccCCCC-CceeeeccCCCccccccc----CCC---C----ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEE
Q 037555 19 TLESVPD-AVPAVFTEPPIEDQLAWH----TLW---P----ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIW 86 (298)
Q Consensus 19 ~~~~~~~-~v~~~~~~~~~~~~~~~~----~~~---~----~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~ 86 (298)
.+..|.. .+..+.|. +++.++.. .+| + ....+.+|...+..++|+|+|+.|++++. ++.|+
T Consensus 331 ~~~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~-----~~~v~ 403 (1045)
T 1k32_A 331 KVPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAND-----RFEIM 403 (1045)
T ss_dssp ECSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEET-----TSEEE
T ss_pred EccCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECC-----CCeEE
Confidence 3455666 66666666 44444332 233 1 24455678889999999999999999954 78999
Q ss_pred EEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCC----------eEEEEEeccCCCCccceeeeEEeeccCCceE
Q 037555 87 LWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDR----------QFSVFAIQRTGTGEIDYQLIARQEAHKRIIW 156 (298)
Q Consensus 87 vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~ 156 (298)
+||+.+++....+..|...+.+++|+|||++|++++.++ .|++||+.. .. ...+..|...+.
T Consensus 404 ~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~-------g~-~~~l~~~~~~~~ 475 (1045)
T 1k32_A 404 TVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG-------RK-IFAATTENSHDY 475 (1045)
T ss_dssp EEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT-------TE-EEECSCSSSBEE
T ss_pred EEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC-------Cc-EEEeeCCCcccC
Confidence 999999888777767889999999999999998887654 899999986 33 556667788889
Q ss_pred EEEEccCCCEEEEeeCCCeEEEEEccCCcce----------------------------------------eeeeecCCC
Q 037555 157 SCSWNPFGHEFATGSRDKTVKIWAVENKSSV----------------------------------------KQILALPPF 196 (298)
Q Consensus 157 ~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~----------------------------------------~~~~~~~~~ 196 (298)
.++|+|++++|++++.++...+|+....... ..+..+..+
T Consensus 476 ~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~ 555 (1045)
T 1k32_A 476 APAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVD 555 (1045)
T ss_dssp EEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCC
T ss_pred CceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCC
Confidence 9999999999999998777777764322110 011123335
Q ss_pred CCceEEEEEeeccccCCccEEEE-------------eecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceE
Q 037555 197 NSSVTALSWVGLDRQKNHGFLAV-------------GMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAV 263 (298)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~l~~-------------g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 263 (298)
...+..++++|++ .++++ ......|++||+.++ .. ..+ ...+
T Consensus 556 ~~~~~~~~~s~dg-----~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~-------------~~-~~l------~~~v 610 (1045)
T 1k32_A 556 PGDYRMIIPLESS-----ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-------------KV-TEV------KNNL 610 (1045)
T ss_dssp CBCEEEEEECSSE-----EEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC-------------CE-EEE------EEEE
T ss_pred CCChhheEEcCCC-----eEEEEecccCcccccccccCCCceEEEEECCCC-------------cE-EEe------ecCc
Confidence 5678899999988 56664 112446777777654 21 111 1568
Q ss_pred EEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 264 NRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.+++|+||+ ..|++++.| .|++||+.
T Consensus 611 ~~~~~S~DG-------~~l~~~~~~-~i~~~d~~ 636 (1045)
T 1k32_A 611 TDLRLSADR-------KTVMVRKDD-GKIYTFPL 636 (1045)
T ss_dssp EEEEECTTS-------CEEEEEETT-SCEEEEES
T ss_pred ceEEECCCC-------CEEEEEcCC-cEEEEeCc
Confidence 899999999 788888766 79999974
No 152
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.82 E-value=7.8e-17 Score=131.67 Aligned_cols=213 Identities=12% Similarity=0.053 Sum_probs=140.0
Q ss_pred cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc--------------cccccEEEEEEcCCCCEEE
Q 037555 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ--------------SHSLTVTQIRFSHDDNLLL 119 (298)
Q Consensus 54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~--------------~~~~~v~~~~~~~~~~~l~ 119 (298)
.+...+..+++ ++++|++++. .++.|.+|++.....+..+. .+...+.+++|+|++++++
T Consensus 97 ~~~~~p~~~~~--dg~~l~~~~~----~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~ 170 (361)
T 3scy_A 97 TMGADPCYLTT--NGKNIVTANY----SGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL 170 (361)
T ss_dssp CSSSCEEEEEE--CSSEEEEEET----TTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred cCCCCcEEEEE--CCCEEEEEEC----CCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence 35556777887 8888887763 47899999997543332211 1223468899999999766
Q ss_pred EEe-CCCeEEEEEeccCCC----C-ccce-eeeEEeeccCCceEEEEEccCCCEEEEee-CCCeEEEEEccCCcc--eee
Q 037555 120 SVS-RDRQFSVFAIQRTGT----G-EIDY-QLIARQEAHKRIIWSCSWNPFGHEFATGS-RDKTVKIWAVENKSS--VKQ 189 (298)
Q Consensus 120 ~~~-~dg~i~iwd~~~~~~----~-~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~--~~~ 189 (298)
+++ .++.|.+|++..... . .... ........+......++|+|+++++++++ .++.|.+||+.++.. ...
T Consensus 171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~ 250 (361)
T 3scy_A 171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQT 250 (361)
T ss_dssp EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEE
T ss_pred EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEE
Confidence 655 489999999986431 0 0000 00112223445678999999999887777 689999999986543 222
Q ss_pred eeecCCCCCceEEEEEeeccccCCccEEEEeec--CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEE
Q 037555 190 ILALPPFNSSVTALSWVGLDRQKNHGFLAVGME--SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMA 267 (298)
Q Consensus 190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 267 (298)
+.....+...+..++|+|++ ++|+++.. ++.|.+|++...... ...+..+. . ...+..++
T Consensus 251 ~~~~~~~~~~~~~i~~spdg-----~~l~v~~~~~~~~i~v~~~~~~~g~---------~~~~~~~~---~-g~~~~~~~ 312 (361)
T 3scy_A 251 VAADTVNAQGSGDIHLSPDG-----KYLYASNRLKADGVAIFKVDETNGT---------LTKVGYQL---T-GIHPRNFI 312 (361)
T ss_dssp EESCSSCCCCEEEEEECTTS-----SEEEEEECSSSCEEEEEEECTTTCC---------EEEEEEEE---C-SSCCCEEE
T ss_pred EecCCCCCCCcccEEECCCC-----CEEEEECCCCCCEEEEEEEcCCCCc---------EEEeeEec---C-CCCCceEE
Confidence 22233334557899999999 67766554 489999999632100 02222222 2 45678899
Q ss_pred eecCCCCCCCcceEEEeee-CCCcEEEeEec
Q 037555 268 WKTHEKPKNSRTMQLASCG-ADNTVRVFQVN 297 (298)
Q Consensus 268 ~~~~~~~~~~~~~~l~s~~-~d~~i~iw~~~ 297 (298)
|+|++ ++|++++ .++.|.+|+++
T Consensus 313 ~spdg-------~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 313 ITPNG-------KYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp ECTTS-------CEEEEEETTTTEEEEEEEC
T ss_pred ECCCC-------CEEEEEECCCCCEEEEEEE
Confidence 99999 6777666 67899998764
No 153
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=2.2e-18 Score=139.91 Aligned_cols=197 Identities=8% Similarity=-0.017 Sum_probs=138.7
Q ss_pred ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccc------cccEEEEEEcCCCCEEEEEeCC-------
Q 037555 58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSH------SLTVTQIRFSHDDNLLLSVSRD------- 124 (298)
Q Consensus 58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~d------- 124 (298)
.+..++|+|+++.+++++ ..++.|.+||+.+++.+..+... ...+..++|+|+++++++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~----~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 119 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLN----NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH 119 (349)
T ss_dssp SSCEEEECTTSSEEEEEE----TTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSC
T ss_pred CCceeEECCCCCEEEEEe----CCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccc
Confidence 578999999999776554 34789999999998877666532 2347889999999999998865
Q ss_pred -----CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC-C---
Q 037555 125 -----RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP-P--- 195 (298)
Q Consensus 125 -----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~--- 195 (298)
+.|.+||+.+... ...+.... +...+.+++|+|+++ +++++. .|.+||+.+++....+..-. .
T Consensus 120 ~~~~~~~i~~~d~~~~~~----~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~ 191 (349)
T 1jmx_B 120 YVVKPPRLEVFSTADGLE----AKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKG 191 (349)
T ss_dssp EEECCCEEEEEEGGGGGG----BCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTT
T ss_pred cccCCCeEEEEECCCccc----cceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCcc
Confidence 8999999986321 11122222 334688899999999 555543 49999998877654221110 0
Q ss_pred -------------------------------------------------------------CCCceEEEEEee-ccccCC
Q 037555 196 -------------------------------------------------------------FNSSVTALSWVG-LDRQKN 213 (298)
Q Consensus 196 -------------------------------------------------------------~~~~v~~~~~~~-~~~~~~ 213 (298)
....+..++|+| ++
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg---- 267 (349)
T 1jmx_B 192 YSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP---- 267 (349)
T ss_dssp BCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT----
T ss_pred ccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC----
Confidence 001234556667 66
Q ss_pred ccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEE
Q 037555 214 HGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRV 293 (298)
Q Consensus 214 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 293 (298)
.+++++ ++.|.+||+.++ +....+. ....+.+++|+|++ .+|++++.++.|++
T Consensus 268 -~~l~~~--~~~v~~~d~~~~-------------~~~~~~~----~~~~~~~~~~s~dg-------~~l~~~~~~~~v~v 320 (349)
T 1jmx_B 268 -NQIYGV--LNRLAKYDLKQR-------------KLIKAAN----LDHTYYCVAFDKKG-------DKLYLGGTFNDLAV 320 (349)
T ss_dssp -TEEEEE--ESEEEEEETTTT-------------EEEEEEE----CSSCCCEEEECSSS-------SCEEEESBSSEEEE
T ss_pred -CEEEEE--cCeEEEEECccC-------------eEEEEEc----CCCCccceEECCCC-------CEEEEecCCCeEEE
Confidence 677777 789999999876 4444433 23346789999998 67777888999999
Q ss_pred eEec
Q 037555 294 FQVN 297 (298)
Q Consensus 294 w~~~ 297 (298)
||++
T Consensus 321 ~d~~ 324 (349)
T 1jmx_B 321 FNPD 324 (349)
T ss_dssp EETT
T ss_pred Eecc
Confidence 9974
No 154
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.81 E-value=4.2e-19 Score=154.26 Aligned_cols=200 Identities=9% Similarity=-0.036 Sum_probs=143.6
Q ss_pred CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccccc-ccEEEEEEcCCCCEEEEEeC---CCeEEEEE
Q 037555 56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHS-LTVTQIRFSHDDNLLLSVSR---DRQFSVFA 131 (298)
Q Consensus 56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---dg~i~iwd 131 (298)
..+|++++|+|||+.||.++. .+++++||++.+++... +..|. ..+..++|+|| +++++++. +....+|.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~----~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~ 94 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGF----SEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFK 94 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEE----ETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEE
T ss_pred ccchheeecCCCCCeEEEEEc----cCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEE
Confidence 557999999999999999863 38899999997666544 44444 68889999988 67776665 45566665
Q ss_pred ecc--CCCCcc--------------ce--------------------eeeEEeeccCCceEEEEEccCCCEEEEeeCC--
Q 037555 132 IQR--TGTGEI--------------DY--------------------QLIARQEAHKRIIWSCSWNPFGHEFATGSRD-- 173 (298)
Q Consensus 132 ~~~--~~~~~~--------------~~--------------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-- 173 (298)
+.. ...... +. .....+..+.. .+++|+|+|++|++++.+
T Consensus 95 ~~~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~ 172 (582)
T 3o4h_A 95 VNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGG 172 (582)
T ss_dssp EETTSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEET
T ss_pred EeccCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCC
Confidence 544 211000 00 00011111112 678899999999988876
Q ss_pred --CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCC--cEEEEEeeecccccccCCCCCCcce
Q 037555 174 --KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESG--VIELWSISVNRTNDVSTPAPSTANI 249 (298)
Q Consensus 174 --g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~ 249 (298)
+.|++||+.+++.. .+..+...+..++|+|++ +.|+++..++ .|++||+.++ ..
T Consensus 173 ~~~~i~~~d~~~g~~~----~l~~~~~~~~~~~~SpDG-----~~l~~~~~~~~~~i~~~d~~~~-------------~~ 230 (582)
T 3o4h_A 173 GRVSLFTSNLSSGGLR----VFDSGEGSFSSASISPGM-----KVTAGLETAREARLVTVDPRDG-------------SV 230 (582)
T ss_dssp TEEEEEEEETTTCCCE----EECCSSCEEEEEEECTTS-----CEEEEEECSSCEEEEEECTTTC-------------CE
T ss_pred CCeEEEEEcCCCCCce----EeecCCCccccceECCCC-----CEEEEccCCCeeEEEEEcCCCC-------------cE
Confidence 78999999887654 345677889999999999 7888888888 8999998765 22
Q ss_pred eeeeccCCcccceEEEEE--------eecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 250 IIRFDPFACHVAAVNRMA--------WKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 250 ~~~~~~~~~~~~~v~~~~--------~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
. . +..|...+..++ |+||+ .++++++.|+.+++|++
T Consensus 231 ~-~---~~~~~~~~~~~~~~~~~~~~~spdg-------~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 231 E-D---LELPSKDFSSYRPTAITWLGYLPDG-------RLAVVARREGRSAVFID 274 (582)
T ss_dssp E-E---CCCSCSHHHHHCCSEEEEEEECTTS-------CEEEEEEETTEEEEEET
T ss_pred E-E---ccCCCcChhhhhhccccceeEcCCC-------cEEEEEEcCCcEEEEEE
Confidence 2 2 334555555566 99999 89999999999999985
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=1.8e-16 Score=129.55 Aligned_cols=215 Identities=10% Similarity=0.081 Sum_probs=142.2
Q ss_pred CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC--cee--eeccccccccEEEEEEcCCCCEEEEEe-CCCeEEE
Q 037555 55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS--WKA--MGRLQSHSLTVTQIRFSHDDNLLLSVS-RDRQFSV 129 (298)
Q Consensus 55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~--~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i 129 (298)
+...+..++|+|+|++|++++.+. ..++.|.+|++.. ++. +.....+......+++ ++++|++++ .++.|.+
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~-~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFS-KDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCS-STTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccC-CCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEE
Confidence 667788999999999999986521 0348999998865 432 3333334556677777 788777766 5889999
Q ss_pred EEeccCCCCccceeeeEEee--------ccCCceEEEEEccCCCEEEEee-CCCeEEEEEccCCcc------ee-----e
Q 037555 130 FAIQRTGTGEIDYQLIARQE--------AHKRIIWSCSWNPFGHEFATGS-RDKTVKIWAVENKSS------VK-----Q 189 (298)
Q Consensus 130 wd~~~~~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~~~~------~~-----~ 189 (298)
|++........ ........ .+...+.+++|+|+++++++++ .++.|.+|++..... +. .
T Consensus 125 ~~~~~~g~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~ 203 (361)
T 3scy_A 125 FPIGQDGALLP-ASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE 203 (361)
T ss_dssp EEBCTTSCBCS-CSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE
T ss_pred EEeCCCCcCcc-cceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc
Confidence 99975332111 00011111 1123458899999999776665 478999999875442 11 1
Q ss_pred eeecCCCCCceEEEEEeeccccCCccEEEEee-cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEe
Q 037555 190 ILALPPFNSSVTALSWVGLDRQKNHGFLAVGM-ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAW 268 (298)
Q Consensus 190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 268 (298)
.... .....+..++|+|++ .++++++ .++.|.+|++.++.. .....+.....+...+..++|
T Consensus 204 ~~~~-~~~~~~~~~~~spdg-----~~l~v~~~~~~~v~v~~~~~g~~-----------~~~~~~~~~~~~~~~~~~i~~ 266 (361)
T 3scy_A 204 AFKV-APGSGPRHLIFNSDG-----KFAYLINEIGGTVIAFRYADGML-----------DEIQTVAADTVNAQGSGDIHL 266 (361)
T ss_dssp EEEC-CTTCCEEEEEECTTS-----SEEEEEETTTCEEEEEEEETTEE-----------EEEEEEESCSSCCCCEEEEEE
T ss_pred ceec-CCCCCCeEEEEcCCC-----CEEEEEcCCCCeEEEEEecCCce-----------EEeEEEecCCCCCCCcccEEE
Confidence 1122 245567899999998 6666666 689999999985421 223333333345556789999
Q ss_pred ecCCCCCCCcceEEEeeeC--CCcEEEeEec
Q 037555 269 KTHEKPKNSRTMQLASCGA--DNTVRVFQVN 297 (298)
Q Consensus 269 ~~~~~~~~~~~~~l~s~~~--d~~i~iw~~~ 297 (298)
+|++ ++|+++.. ++.|.+|+++
T Consensus 267 spdg-------~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 267 SPDG-------KYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp CTTS-------SEEEEEECSSSCEEEEEEEC
T ss_pred CCCC-------CEEEEECCCCCCEEEEEEEc
Confidence 9999 67755554 5899999984
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=5.8e-18 Score=147.07 Aligned_cols=237 Identities=9% Similarity=-0.009 Sum_probs=161.7
Q ss_pred ccccceeeeecCcccccccCCCCCceeeeccCCCcccccccCC------CC----------ceEEeccCCCceEEEEEcC
Q 037555 3 AATRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHTL------WP----------ESHKLYGHGNELFSLCCDH 66 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------~~----------~~~~~~~h~~~v~~~~~s~ 66 (298)
++..+.+...+|+.......+...+..+.++ |+ ..+.+... |. ....+... ..+...+|+|
T Consensus 43 ~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~s-pd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~-~~~~~~~~s~ 119 (582)
T 3o4h_A 43 EGSVNAYLYDGGETVKLNREPINSVLDPHYG-VG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV-KPMRILSGVD 119 (582)
T ss_dssp TTEEEEEEEETTEEEECCSSCCSEECEECTT-CS-EEEEEEECSTTSCCEEEEEEETTSTTCCEECTTS-CSBEEEEEEE
T ss_pred CCceeEEEEcCCCcEeeecccccccccccCC-CC-eEEEEeccCCCCcceEEEEEeccCCCccccccCC-CCceeeeeCC
Confidence 3445667766666554444443678888888 44 44432211 10 01122222 2345668888
Q ss_pred CCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCC----CeEEEEEeccCCCCccce
Q 037555 67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD----RQFSVFAIQRTGTGEIDY 142 (298)
Q Consensus 67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~ 142 (298)
+|+.++..+. . ++.+.+||+.+++...... +.. .+++|+|||++|++++.+ +.|++||+..+.
T Consensus 120 dg~~~~~~s~---~-~~~~~l~d~~~g~~~~l~~-~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~------ 186 (582)
T 3o4h_A 120 TGEAVVFTGA---T-EDRVALYALDGGGLRELAR-LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG------ 186 (582)
T ss_dssp CSSCEEEEEE---C-SSCEEEEEEETTEEEEEEE-ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC------
T ss_pred CCCeEEEEec---C-CCCceEEEccCCcEEEeec-CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC------
Confidence 8864333322 2 3344599998887655443 333 789999999999988877 789999987632
Q ss_pred eeeEEeeccCCceEEEEEccCCCEEEEeeCCC--eEEEEEccCCcceeeeeecCCCCCceEEEE--------EeeccccC
Q 037555 143 QLIARQEAHKRIIWSCSWNPFGHEFATGSRDK--TVKIWAVENKSSVKQILALPPFNSSVTALS--------WVGLDRQK 212 (298)
Q Consensus 143 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~~ 212 (298)
...+..|...+..++|+|||+.|+++..++ .|++||+.+++.. .+..+...+..++ |+|++
T Consensus 187 --~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~spdg--- 257 (582)
T 3o4h_A 187 --LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE----DLELPSKDFSSYRPTAITWLGYLPDG--- 257 (582)
T ss_dssp --CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE----ECCCSCSHHHHHCCSEEEEEEECTTS---
T ss_pred --ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE----EccCCCcChhhhhhccccceeEcCCC---
Confidence 335667888899999999999999888888 8999999887654 3345666666667 99998
Q ss_pred CccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCc--
Q 037555 213 NHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNT-- 290 (298)
Q Consensus 213 ~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~-- 290 (298)
.++++++.++.+++|++ + +... .+...|.+++|+ ++ .++++++.+..
T Consensus 258 --~~~~~~~~~g~~~l~~~--g-------------~~~~------~~~~~v~~~~~s-dg-------~~l~~~s~~~~p~ 306 (582)
T 3o4h_A 258 --RLAVVARREGRSAVFID--G-------------ERVE------APQGNHGRVVLW-RG-------KLVTSHTSLSTPP 306 (582)
T ss_dssp --CEEEEEEETTEEEEEET--T-------------EEEC------CCSSEEEEEEEE-TT-------EEEEEEEETTEEE
T ss_pred --cEEEEEEcCCcEEEEEE--C-------------Ceec------cCCCceEEEEec-CC-------EEEEEEcCCCCCC
Confidence 79999999999999998 4 2222 134678899999 88 78888877744
Q ss_pred -EEEeE
Q 037555 291 -VRVFQ 295 (298)
Q Consensus 291 -i~iw~ 295 (298)
+.+|+
T Consensus 307 ~l~~~d 312 (582)
T 3o4h_A 307 RIVSLP 312 (582)
T ss_dssp EEEEET
T ss_pred eEEEEc
Confidence 55554
No 157
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=8.6e-17 Score=131.66 Aligned_cols=207 Identities=9% Similarity=0.056 Sum_probs=136.0
Q ss_pred eEEEEEcCCCCE--EEeEe------ccCCC----CceEEEEEEcC-Cceeeeccc----cccccEEEEEEcCCCCEEEEE
Q 037555 59 LFSLCCDHQGKL--VASSC------KAQST----AAAEIWLWEVG-SWKAMGRLQ----SHSLTVTQIRFSHDDNLLLSV 121 (298)
Q Consensus 59 v~~~~~s~~~~~--l~~~~------~~~~~----~d~~i~vw~~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~ 121 (298)
+.+++|+|+|++ ++++. .. . .++.+.+|++. +++....+. .+...+.+++|+|+|++++++
T Consensus 85 ~~~~~~spdg~~l~~~~~~~~~~~~~~--~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 85 PRANDADTNTRAIFLLAAKQPPYAVYA--NPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp GGGGCTTSCCEEEEEEECSSTTCCEEE--EEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEE
T ss_pred CccEEECCCCCEEEEEEecCCcceecc--ceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEE
Confidence 556889999995 44442 00 0 37899999997 455443333 245678999999999988877
Q ss_pred eC-CCeEEEEEec-cCCCCccceeeeEEee--ccCCceEEEEEccCCCEEEEeeC-CCeEEEEEcc--CCcce---eeee
Q 037555 122 SR-DRQFSVFAIQ-RTGTGEIDYQLIARQE--AHKRIIWSCSWNPFGHEFATGSR-DKTVKIWAVE--NKSSV---KQIL 191 (298)
Q Consensus 122 ~~-dg~i~iwd~~-~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~--~~~~~---~~~~ 191 (298)
.. ++.|++|++. .+. ...+..+. .+...+..++|+|+++++++++. ++.|.+|++. +++.. ..+.
T Consensus 163 ~~~~~~v~~~~~~~~g~-----~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~ 237 (365)
T 1jof_A 163 DLTANKLWTHRKLASGE-----VELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFP 237 (365)
T ss_dssp ETTTTEEEEEEECTTSC-----EEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEE
T ss_pred cCCCCEEEEEEECCCCC-----EEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEE
Confidence 64 6899999997 322 22223332 23566899999999999888775 7899999875 34321 1122
Q ss_pred ecCC----CCC------ceEEEE-EeeccccCCccEEEEeecC-C-----cEEEEEeee-cccccccCCCCCCcceeeee
Q 037555 192 ALPP----FNS------SVTALS-WVGLDRQKNHGFLAVGMES-G-----VIELWSISV-NRTNDVSTPAPSTANIIIRF 253 (298)
Q Consensus 192 ~~~~----~~~------~v~~~~-~~~~~~~~~~~~l~~g~~d-g-----~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~ 253 (298)
.+.. +.. .+..++ |+|++ ++|+++..+ . .|.+|++.. + ......
T Consensus 238 ~~~~~~~g~~~~~~~~~~~~~i~~~spdG-----~~l~v~~~~~~~~~~~~i~v~~~~~~g-------------~~~~~~ 299 (365)
T 1jof_A 238 LIPPGIPDRDPETGKGLYRADVCALTFSG-----KYMFASSRANKFELQGYIAGFKLRDCG-------------SIEKQL 299 (365)
T ss_dssp SSCTTCCCBCTTTSSBSEEEEEEEECTTS-----SEEEEEEEESSTTSCCEEEEEEECTTS-------------CEEEEE
T ss_pred cCCCCcCCcccccccccccccEEEECCCC-----CEEEEECCCCCCCCCCeEEEEEECCCC-------------CEEEee
Confidence 3321 122 578999 99998 677666543 2 899999963 3 211110
Q ss_pred ccCCcccceEEEEEeec---CCCCCCCcceEEEeeeC-CCcEEEeEec
Q 037555 254 DPFACHVAAVNRMAWKT---HEKPKNSRTMQLASCGA-DNTVRVFQVN 297 (298)
Q Consensus 254 ~~~~~~~~~v~~~~~~~---~~~~~~~~~~~l~s~~~-d~~i~iw~~~ 297 (298)
.....+...+..++|+| ++ .+|++++. ++.|++|+++
T Consensus 300 ~~~~~~~~~~~~~a~sp~~~dg-------~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 300 FLSPTPTSGGHSNAVSPCPWSD-------EWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp EEEECSSCCTTCCCEEECTTCT-------TEEEEECSSSCEEEEEEEE
T ss_pred eeeecCCCCcccceecCCCcCC-------CEEEEEEcCCCeEEEEEEc
Confidence 00112334556789999 78 68887776 4899999874
No 158
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.77 E-value=3.5e-18 Score=152.05 Aligned_cols=196 Identities=13% Similarity=0.148 Sum_probs=137.2
Q ss_pred EEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccc---cEEEEEEcCCCCEEEEEeC---------CCeEE
Q 037555 61 SLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSL---TVTQIRFSHDDNLLLSVSR---------DRQFS 128 (298)
Q Consensus 61 ~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~---------dg~i~ 128 (298)
+++|+|+|++++++ .|+.|++||+.+++....+..+.. .+.+++|+|||++|+.++. ++.|+
T Consensus 20 ~~~~s~dg~~~~~~------~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~ 93 (719)
T 1z68_A 20 FPNWISGQEYLHQS------ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYY 93 (719)
T ss_dssp CCEESSSSEEEEEC------TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred ccEECCCCeEEEEc------CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEE
Confidence 78999999766554 378999999999887766665544 3899999999999998876 78999
Q ss_pred EEEeccCCCCccceeee--EEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCce------
Q 037555 129 VFAIQRTGTGEIDYQLI--ARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSV------ 200 (298)
Q Consensus 129 iwd~~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v------ 200 (298)
+||+..+. .+ ..+ ...+..++|+|+|+.|+++. ++.|++||+.+++... + ...++...+
T Consensus 94 ~~d~~~g~-------~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~-l-~~~~~~~~v~~g~~~ 160 (719)
T 1z68_A 94 IYDLSNGE-------FVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQ-I-TFNGRENKIFNGIPD 160 (719)
T ss_dssp EEETTTTE-------ECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEE-C-CCCCBTTTEEESSCC
T ss_pred EEECCCCc-------cccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEE-E-ecCCCcCCeEccccc
Confidence 99998632 21 111 24588899999999999986 7899999998876543 1 112222222
Q ss_pred -----------EEEEEeeccccCCccEEEEeecCC----------------------------------cEEEEEeeecc
Q 037555 201 -----------TALSWVGLDRQKNHGFLAVGMESG----------------------------------VIELWSISVNR 235 (298)
Q Consensus 201 -----------~~~~~~~~~~~~~~~~l~~g~~dg----------------------------------~i~vwd~~~~~ 235 (298)
.+++|+|++ ..|++++.|. .|++||+.++.
T Consensus 161 ~v~~ee~~~~~~~~~wSPDG-----~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~ 235 (719)
T 1z68_A 161 WVYEEEMLATKYALWWSPNG-----KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPA 235 (719)
T ss_dssp HHHHHHTTCSSCCEEECTTS-----SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHH
T ss_pred ceeeeecccCcccEEECCCC-----CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCC
Confidence 489999999 7888877542 67788877652
Q ss_pred cccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCC----CcEEEeE
Q 037555 236 TNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD----NTVRVFQ 295 (298)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d----~~i~iw~ 295 (298)
.... ..+..-..+.+|...+.+++|+||+ .++++.... ..|.+||
T Consensus 236 ~~~~--------~~~~~~~~~~~~~~~~~~~~~SpD~-------~~~~~~~~~~~~~~~l~~~d 284 (719)
T 1z68_A 236 YVGP--------QEVPVPAMIASSDYYFSWLTWVTDE-------RVCLQWLKRVQNVSVLSICD 284 (719)
T ss_dssp HHCC--------EECCCCHHHHTSCEEEEEEEESSSS-------EEEEEEEESSTTEEEEEEEE
T ss_pred ccce--------eEccCCccCCCCcceEEEeEEeCCC-------eEEEEEeccccCeEEEEEEc
Confidence 1000 0000001123578889999999998 777774432 2377777
No 159
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.77 E-value=2.4e-17 Score=133.77 Aligned_cols=154 Identities=9% Similarity=0.059 Sum_probs=112.3
Q ss_pred EEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccccc-ccEEEEEEcCCCCEEE-EEeCCCeEEEEEeccCCCC
Q 037555 61 SLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHS-LTVTQIRFSHDDNLLL-SVSRDRQFSVFAIQRTGTG 138 (298)
Q Consensus 61 ~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~ 138 (298)
.+++++++.++++++ .++.|++||+.+++.+..+..+. ..+..++|+|+++.++ +...++.|.+||+.+
T Consensus 4 g~~~~~~~~~~v~~~-----~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t---- 74 (349)
T 1jmx_B 4 GPALKAGHEYMIVTN-----YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT---- 74 (349)
T ss_dssp CCCCCTTCEEEEEEE-----TTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTT----
T ss_pred cccccCCCEEEEEeC-----CCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCC----
Confidence 456788888888885 48999999999998887776433 2578899999998654 555789999999876
Q ss_pred ccceeeeEEeecc------CCceEEEEEccCCCEEEEeeCC------------CeEEEEEccCCcceeeeeecCCCCCce
Q 037555 139 EIDYQLIARQEAH------KRIIWSCSWNPFGHEFATGSRD------------KTVKIWAVENKSSVKQILALPPFNSSV 200 (298)
Q Consensus 139 ~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~d------------g~i~~wd~~~~~~~~~~~~~~~~~~~v 200 (298)
.+....+... ...+..++|+|+++++++++.+ +.|.+||+.+++....+..+. +...+
T Consensus 75 ---~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~ 150 (349)
T 1jmx_B 75 ---CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQV 150 (349)
T ss_dssp ---TEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSC
T ss_pred ---CcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcc
Confidence 3334433322 2236789999999999998865 899999998855433222332 33468
Q ss_pred EEEEEeeccccCCccEEEEeecCCcEEEEEeeecc
Q 037555 201 TALSWVGLDRQKNHGFLAVGMESGVIELWSISVNR 235 (298)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 235 (298)
.+++|+|++ . +++++ +.|++||..+++
T Consensus 151 ~~~~~s~dg-----~-l~~~~--~~i~~~d~~~~~ 177 (349)
T 1jmx_B 151 YLMRAADDG-----S-LYVAG--PDIYKMDVKTGK 177 (349)
T ss_dssp CCEEECTTS-----C-EEEES--SSEEEECTTTCC
T ss_pred cceeECCCC-----c-EEEcc--CcEEEEeCCCCc
Confidence 899999998 6 55543 349999987654
No 160
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.76 E-value=5.3e-16 Score=136.79 Aligned_cols=212 Identities=9% Similarity=-0.019 Sum_probs=139.5
Q ss_pred eEEecc-----CCCceEEEEEcCCCCEEEeEeccCC-----CCceEEEEEEcCC------ceeeeccc-cccccEEEEEE
Q 037555 49 SHKLYG-----HGNELFSLCCDHQGKLVASSCKAQS-----TAAAEIWLWEVGS------WKAMGRLQ-SHSLTVTQIRF 111 (298)
Q Consensus 49 ~~~~~~-----h~~~v~~~~~s~~~~~l~~~~~~~~-----~~d~~i~vw~~~~------~~~~~~~~-~~~~~v~~~~~ 111 (298)
...+.. |...+.+++|+|||+.|++++.+.. .....|++|++.+ ++.. .+. .+...+..++|
T Consensus 117 ~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~ 195 (662)
T 3azo_A 117 PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRL 195 (662)
T ss_dssp CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEE
T ss_pred CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceE
Confidence 445555 6678899999999999998865210 0126899999987 5543 444 55677888999
Q ss_pred cCCCCEEEEEeCC--------CeEEEEEec-cCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCC--eEEEEE
Q 037555 112 SHDDNLLLSVSRD--------RQFSVFAIQ-RTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDK--TVKIWA 180 (298)
Q Consensus 112 ~~~~~~l~~~~~d--------g~i~iwd~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~wd 180 (298)
+|||++|+.++.+ ..|++||+. .+.. .........+...+..+.|+|++++++++..++ .|.+||
T Consensus 196 SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~----~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~ 271 (662)
T 3azo_A 196 SPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF----ADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVD 271 (662)
T ss_dssp CTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE----EEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEEC
T ss_pred CCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc----cccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEE
Confidence 9999999887755 379999997 3210 022233334567899999999999778887788 566667
Q ss_pred ccCCcceeeeeecCCCCCc--------eEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeee
Q 037555 181 VENKSSVKQILALPPFNSS--------VTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIR 252 (298)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 252 (298)
+.+++... ....+... +..++|+|++ .+++++.. +.++||.+.... .....
T Consensus 272 ~~~~~~~~---l~~~~~~~~~p~w~~~~~~~~~~~~~-----~~~~~~~~-~~~~l~~~d~~~------------~~~~~ 330 (662)
T 3azo_A 272 PATGAATQ---LCRREEEFAGPLWTPGMRWFAPLANG-----LIAVVHGK-GAAVLGILDPES------------GELVD 330 (662)
T ss_dssp TTTCCEEE---SSCCSSBSSCCCCSTTCCSEEECTTS-----CEEEEEBS-SSCEEEEEETTT------------TEEEE
T ss_pred CCCCceee---cccccccccCccccccCceEeEeCCC-----EEEEEEEc-CccEEEEEECCC------------CcEEE
Confidence 65554332 12211111 4578888877 78888888 999999665321 22233
Q ss_pred eccCCcccceEEEE-EeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 253 FDPFACHVAAVNRM-AWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 253 ~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
+..|...+..+ +++++. .++++++.+....+|.+
T Consensus 331 ---l~~~~~~~~~~~s~~~~~-------~~~~~~~~~~~~~i~~~ 365 (662)
T 3azo_A 331 ---AAGPWTEWAATLTVSGTR-------AVGVAASPRTAYEVVEL 365 (662)
T ss_dssp ---CCSSCCEEEEEEEEETTE-------EEEEEEETTEEEEEEEE
T ss_pred ---ecCCCCeEEEEEecCCCE-------EEEEEcCCCCCCEEEEE
Confidence 33466677766 554443 45555566665666654
No 161
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.76 E-value=2.3e-16 Score=129.09 Aligned_cols=210 Identities=10% Similarity=0.007 Sum_probs=137.9
Q ss_pred CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcC-Cceeeeccccc-cccEEEEEEcCCCCE--EEEEe--------
Q 037555 55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVG-SWKAMGRLQSH-SLTVTQIRFSHDDNL--LLSVS-------- 122 (298)
Q Consensus 55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~--l~~~~-------- 122 (298)
....+..++|+|+|++|++++. + .|.+|++. +++........ .+.+..++|+|+|++ ++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~-----~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~ 111 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAM-----K-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYA 111 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEB-----T-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEE
T ss_pred CCCCCcEEEECCCCCEEEEEcc-----c-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceecc
Confidence 3446889999999999988854 4 89999997 67654332210 122456899999984 44553
Q ss_pred -----CCCeEEEEEeccCCCCccceeeeEEee-ccCCceEEEEEccCCCEEEEeeC-CCeEEEEEcc-CCcceeeeeecC
Q 037555 123 -----RDRQFSVFAIQRTGTGEIDYQLIARQE-AHKRIIWSCSWNPFGHEFATGSR-DKTVKIWAVE-NKSSVKQILALP 194 (298)
Q Consensus 123 -----~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~-~~~~~~~~~~~~ 194 (298)
.++.+.+|++...... ...+..+. .+...+.+++|+|++++++++.. ++.|++||+. +++... +..+.
T Consensus 112 ~~~~~~~g~v~v~~~~~~g~~---~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~-~~~~~ 187 (365)
T 1jof_A 112 NPFYKFAGYGNVFSVSETGKL---EKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL-VGSVD 187 (365)
T ss_dssp EEESSSCCEEEEEEECTTCCE---EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEE-EEEEE
T ss_pred ceeecCCceEEEEccCCCCcC---cceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEE-eeeEe
Confidence 6899999999742110 11111111 24567899999999998887764 6899999998 554321 11222
Q ss_pred --CCCCceEEEEEeeccccCCccEEEEeec-CCcEEEEEeeecccccccCCCCCCcce---eeeeccC----Ccccc---
Q 037555 195 --PFNSSVTALSWVGLDRQKNHGFLAVGME-SGVIELWSISVNRTNDVSTPAPSTANI---IIRFDPF----ACHVA--- 261 (298)
Q Consensus 195 --~~~~~v~~~~~~~~~~~~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~--- 261 (298)
.+...+..++|+|++ +++++++. ++.|.+|++..... .. ...+..+ .+|..
T Consensus 188 ~~~~g~~p~~~~~spdg-----~~l~v~~~~~~~v~v~~~~~~~g-----------~~~~~~~~~~~~~~~~~g~~~~~~ 251 (365)
T 1jof_A 188 APDPGDHPRWVAMHPTG-----NYLYALMEAGNRICEYVIDPATH-----------MPVYTHHSFPLIPPGIPDRDPETG 251 (365)
T ss_dssp CSSTTCCEEEEEECTTS-----SEEEEEETTTTEEEEEEECTTTC-----------CEEEEEEEEESSCTTCCCBCTTTS
T ss_pred cCCCCCCCCEeEECCCC-----CEEEEEECCCCeEEEEEEeCCCC-----------cEEEccceEEcCCCCcCCcccccc
Confidence 235668999999998 67777664 78999998863110 11 1112111 12332
Q ss_pred ---eEEEEE-eecCCCCCCCcceEEEeeeCC-C-----cEEEeEec
Q 037555 262 ---AVNRMA-WKTHEKPKNSRTMQLASCGAD-N-----TVRVFQVN 297 (298)
Q Consensus 262 ---~v~~~~-~~~~~~~~~~~~~~l~s~~~d-~-----~i~iw~~~ 297 (298)
.+..++ |+|++ ++|+++..+ + .|.+|+++
T Consensus 252 ~~~~~~~i~~~spdG-------~~l~v~~~~~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 252 KGLYRADVCALTFSG-------KYMFASSRANKFELQGYIAGFKLR 290 (365)
T ss_dssp SBSEEEEEEEECTTS-------SEEEEEEEESSTTSCCEEEEEEEC
T ss_pred cccccccEEEECCCC-------CEEEEECCCCCCCCCCeEEEEEEC
Confidence 688999 99999 676665532 3 89999974
No 162
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.75 E-value=7.9e-16 Score=124.11 Aligned_cols=203 Identities=16% Similarity=0.167 Sum_probs=147.9
Q ss_pred CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce-eeecc---------ccccccEEEEEEcC-CCCEEEEEe-
Q 037555 55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK-AMGRL---------QSHSLTVTQIRFSH-DDNLLLSVS- 122 (298)
Q Consensus 55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~-~~~~~---------~~~~~~v~~~~~~~-~~~~l~~~~- 122 (298)
+-..+..++++|+|+++++. ..++.|++|+..... .+..+ ..+-.....++++| +++++++.+
T Consensus 89 ~~~~p~gia~d~~g~l~v~d-----~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~ 163 (329)
T 3fvz_A 89 LFYLPHGLSIDTDGNYWVTD-----VALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY 163 (329)
T ss_dssp TCSSEEEEEECTTSCEEEEE-----TTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS
T ss_pred ccCCceEEEECCCCCEEEEE-----CCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC
Confidence 44578899999999977777 447899999986432 34333 23444688999999 788888886
Q ss_pred CCCeEEEEEeccCCCCccceeeeEEeec----------cCCceEEEEEccC-CCEEEEeeCCCeEEEEEccCCcceeeee
Q 037555 123 RDRQFSVFAIQRTGTGEIDYQLIARQEA----------HKRIIWSCSWNPF-GHEFATGSRDKTVKIWAVENKSSVKQIL 191 (298)
Q Consensus 123 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 191 (298)
.++.|++|+.. ...+..+.. +-.....++++|+ ++++++...+++|++||..+++.+..+
T Consensus 164 ~~~~I~~~~~~--------g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~- 234 (329)
T 3fvz_A 164 CNSRIVQFSPS--------GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI- 234 (329)
T ss_dssp SCCEEEEECTT--------SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE-
T ss_pred CCCeEEEEcCC--------CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE-
Confidence 69999999943 233333322 2234789999998 677777778899999999877776643
Q ss_pred ecCCCCCceEEEEEeeccccCCccEEEE-------eecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEE
Q 037555 192 ALPPFNSSVTALSWVGLDRQKNHGFLAV-------GMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVN 264 (298)
Q Consensus 192 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~-------g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 264 (298)
....+...+..++++| + ..+.+ ...+..|++|+..++ +.+..+....++...+.
T Consensus 235 ~~~~~~~~~~~~~~~p-g-----~~~~~~g~~~v~~~~~~~v~~~~~~~g-------------~~~~~~~~~~~~~~~p~ 295 (329)
T 3fvz_A 235 KHASFGRNVFAISYIP-G-----FLFAVNGKPYFGDQEPVQGFVMNFSSG-------------EIIDVFKPVRKHFDMPH 295 (329)
T ss_dssp CCTTTTTCEEEEEEET-T-----EEEEEECCCCTTCSCCCCEEEEETTTC-------------CEEEEECCSSSCCSSEE
T ss_pred eccccCCCcceeeecC-C-----EEEEeCCCEEeccCCCcEEEEEEcCCC-------------eEEEEEcCCCCccCCee
Confidence 2234566788999999 4 23333 233458999998876 55555543345677789
Q ss_pred EEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 265 RMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 265 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.|+++|++ .++++...++.|++|++.
T Consensus 296 ~ia~~~dG-------~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 296 DIVASEDG-------TVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp EEEECTTS-------EEEEEESSSCCEEEEEEE
T ss_pred EEEECCCC-------CEEEEECCCCEEEEEeCC
Confidence 99999999 899999999999999874
No 163
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=148.39 Aligned_cols=204 Identities=8% Similarity=0.075 Sum_probs=132.8
Q ss_pred ceEEEEEcCCCCEEEeEeccCC----CCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555 58 ELFSLCCDHQGKLVASSCKAQS----TAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQ 133 (298)
Q Consensus 58 ~v~~~~~s~~~~~l~~~~~~~~----~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 133 (298)
.|.+++|||||++|++++.... +.++.|++||+.+++.+.... ....+..++|+|||+.|+.+. ++.|++|++.
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~-l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~ 138 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNE-LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRP 138 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSC-CCSSBCCEEECSSTTCEEEEE-TTEEEEESST
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcccccee-cCcccccceECCCCCEEEEEE-CCeEEEEeCC
Confidence 3899999999999998853110 126899999999887732111 124688899999999999886 7899999987
Q ss_pred cCCCCccceeeeEE-eeccCCce-----------------EEEEEccCCCEEEEeeCCC---------------------
Q 037555 134 RTGTGEIDYQLIAR-QEAHKRII-----------------WSCSWNPFGHEFATGSRDK--------------------- 174 (298)
Q Consensus 134 ~~~~~~~~~~~~~~-~~~~~~~v-----------------~~~~~~~~~~~l~~~~~dg--------------------- 174 (298)
.+.. ... ..++...| ..++|+|||++|++++.|.
T Consensus 139 ~g~~-------~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~ 211 (719)
T 1z68_A 139 GDPP-------FQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTIN 211 (719)
T ss_dssp TSCC-------EECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEE
T ss_pred CCCc-------EEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCcccee
Confidence 6431 111 11222212 4899999999999987552
Q ss_pred -------------eEEEEEccCCcce--eee---eecCCCCCceEEEEEeeccccCCccEEEEeecC----CcEEEEE--
Q 037555 175 -------------TVKIWAVENKSSV--KQI---LALPPFNSSVTALSWVGLDRQKNHGFLAVGMES----GVIELWS-- 230 (298)
Q Consensus 175 -------------~i~~wd~~~~~~~--~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~d----g~i~vwd-- 230 (298)
.|++||+.+++.. ..+ ..+..+...+.+++|+|++ .++++.... ..|.+||
T Consensus 212 ~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-----~~~~~~~~~~~~~~~l~~~d~~ 286 (719)
T 1z68_A 212 IPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-----RVCLQWLKRVQNVSVLSICDFR 286 (719)
T ss_dssp EECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-----EEEEEEEESSTTEEEEEEEEEC
T ss_pred ecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCC-----eEEEEEeccccCeEEEEEEccc
Confidence 7889999887642 111 0123467789999999997 677764433 2488888
Q ss_pred --eeecccccccCCCCCCcceeeeeccCCcccceEE-----EEEeecCCCCCCCcceEEE--eeeCCCcEEEe
Q 037555 231 --ISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVN-----RMAWKTHEKPKNSRTMQLA--SCGADNTVRVF 294 (298)
Q Consensus 231 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~~~~~~~~~~~~~~l~--s~~~d~~i~iw 294 (298)
..+++.... .... ...|...+. .+.|+||+ ..|+ +...+|..+||
T Consensus 287 ~~~~~g~~~~~----------~~~~--~~~~~~~~~~~~~~~~~~spdg-------~~l~~~~~~~~g~~~l~ 340 (719)
T 1z68_A 287 EDWQTWDCPKT----------QEHI--EESRTGWAGGFFVSTPVFSYDA-------ISYYKIFSDKDGYKHIH 340 (719)
T ss_dssp SSSSSEECCGG----------GEEE--EECSSSCSSSSSCCCCEECTTS-------SCEEEEEECTTSCEEEE
T ss_pred CCCCCCceEEE----------Eecc--cccCCceEccccCCccEECCCC-------CeEEEEEEccCCceEEE
Confidence 555422111 0000 023555555 78999999 5333 45566654444
No 164
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.74 E-value=1.6e-16 Score=128.20 Aligned_cols=144 Identities=10% Similarity=0.118 Sum_probs=106.9
Q ss_pred CEEEeEeccCCCCceEEEEEEcCCceeeecccccc-c-cEEEEEEcCCCCEE-EEEeCCCeEEEEEeccCCCCccceeee
Q 037555 69 KLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHS-L-TVTQIRFSHDDNLL-LSVSRDRQFSVFAIQRTGTGEIDYQLI 145 (298)
Q Consensus 69 ~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~-~-~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~ 145 (298)
++|++++ .++.|.+||+.+++.+..+.... . .+..++|+|+++.+ +++..++.|.+||+.+. ..+
T Consensus 2 ~~~v~~~-----~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~-------~~~ 69 (337)
T 1pby_B 2 DYILAPA-----RPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG-------ETL 69 (337)
T ss_dssp EEEEEEE-----TTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC-------CEE
T ss_pred cEEEEcC-----CCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCC-------CeE
Confidence 4677774 48999999999998887776322 1 47889999999765 45566889999998763 333
Q ss_pred EEeec-c----CCceEEEEEccCCCEEEEee------------CCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeec
Q 037555 146 ARQEA-H----KRIIWSCSWNPFGHEFATGS------------RDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGL 208 (298)
Q Consensus 146 ~~~~~-~----~~~v~~~~~~~~~~~l~~~~------------~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 208 (298)
..+.. + ...+..++|+|++++++++. .++.|.+||+.+++.... +. ....+.+++|+|+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~---~~-~~~~~~~~~~s~d 145 (337)
T 1pby_B 70 GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKA---FE-APRQITMLAWARD 145 (337)
T ss_dssp EEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEE---EE-CCSSCCCEEECTT
T ss_pred eeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEE---Ee-CCCCcceeEECCC
Confidence 33332 1 22567899999999998886 579999999988776653 32 2445788999999
Q ss_pred cccCCccEEEEeecCCcEEEEEeeecc
Q 037555 209 DRQKNHGFLAVGMESGVIELWSISVNR 235 (298)
Q Consensus 209 ~~~~~~~~l~~g~~dg~i~vwd~~~~~ 235 (298)
+ .+|+++ ++.|++||+.+++
T Consensus 146 g-----~~l~~~--~~~i~~~d~~~~~ 165 (337)
T 1pby_B 146 G-----SKLYGL--GRDLHVMDPEAGT 165 (337)
T ss_dssp S-----SCEEEE--SSSEEEEETTTTE
T ss_pred C-----CEEEEe--CCeEEEEECCCCc
Confidence 8 667766 6889999987654
No 165
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.73 E-value=7.2e-17 Score=143.96 Aligned_cols=152 Identities=17% Similarity=0.246 Sum_probs=112.2
Q ss_pred ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccccccc-----EEEEEEcCCCCEEEEEeCC--------
Q 037555 58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLT-----VTQIRFSHDDNLLLSVSRD-------- 124 (298)
Q Consensus 58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~d-------- 124 (298)
...++.|+|+|++++++ |+.|++||+.+++....+.+|... ...+.|+|||++|+.++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~ 90 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ-------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSY 90 (740)
T ss_dssp CCCCEEECSSSEEEEEE-------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCE
T ss_pred cccccEECCCCcEEEEc-------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEcc
Confidence 45689999999988886 789999999999877666666532 2447899999999998876
Q ss_pred -CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCce---
Q 037555 125 -RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSV--- 200 (298)
Q Consensus 125 -g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v--- 200 (298)
+.+.+||+.++ . ...+..+...+...+|+|||+.||.+. ++.|++||+.++.... + +..++...+
T Consensus 91 ~~~~~~~d~~~~-------~-~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~-l-t~~g~~~~~~~g 159 (740)
T 4a5s_A 91 TASYDIYDLNKR-------Q-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYR-I-TWTGKEDIIYNG 159 (740)
T ss_dssp EEEEEEEETTTT-------E-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEE-C-CSCCBTTTEEES
T ss_pred ceEEEEEECCCC-------c-EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEE-E-cCCCCccceecC
Confidence 56779999863 2 334556677899999999999999885 6899999998876433 1 222222222
Q ss_pred --------------EEEEEeeccccCCccEEEEeec-CCcEEEEEee
Q 037555 201 --------------TALSWVGLDRQKNHGFLAVGME-SGVIELWSIS 232 (298)
Q Consensus 201 --------------~~~~~~~~~~~~~~~~l~~g~~-dg~i~vwd~~ 232 (298)
..+.|+|++ +.|+.++. ++.+.+|++.
T Consensus 160 ~~~~v~~ee~~~~~~~~~wSpDg-----~~la~~~~d~~~v~~~~~~ 201 (740)
T 4a5s_A 160 ITDWVYEEEVFSAYSALWWSPNG-----TFLAYAQFNDTEVPLIEYS 201 (740)
T ss_dssp BCCHHHHHHTSSSSBCEEECTTS-----SEEEEEEEECTTCCEEEEE
T ss_pred cccccccchhcCCCcceEECCCC-----CEEEEEEEcccCCceEEEE
Confidence 358999999 67777654 3446666553
No 166
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.72 E-value=7.3e-16 Score=127.02 Aligned_cols=208 Identities=10% Similarity=0.008 Sum_probs=141.9
Q ss_pred ceEEeccCCCceEE-----EEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe
Q 037555 48 ESHKLYGHGNELFS-----LCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS 122 (298)
Q Consensus 48 ~~~~~~~h~~~v~~-----~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 122 (298)
++..+..|...... .+|+|||+.|+.++.. .....|.+||+.+++.......+...+..+.|+||++.|+.++
T Consensus 22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~--~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~ 99 (388)
T 3pe7_A 22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAF--DGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVK 99 (388)
T ss_dssp EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECT--TSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEE
T ss_pred ceEEecCCcccccchhhcCccCCCCCCEEEEEEcC--CCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEe
Confidence 45667777766666 8899999999988641 1123699999998888776666666666778999999999999
Q ss_pred CCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEE--EccCCCEEEEe----------------------eCCCeEEE
Q 037555 123 RDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS--WNPFGHEFATG----------------------SRDKTVKI 178 (298)
Q Consensus 123 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~----------------------~~dg~i~~ 178 (298)
.++.|++||+... ........+...+.... ++|++.+++.. ..+..|.+
T Consensus 100 ~~~~l~~~d~~~g-------~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 172 (388)
T 3pe7_A 100 DGRNLMRVDLATL-------EENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR 172 (388)
T ss_dssp TTTEEEEEETTTC-------CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred CCCeEEEEECCCC-------cceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence 9999999999873 22333344444444333 48899888742 24467999
Q ss_pred EEccCCcceeeeeecCCCCCceEEEEEee-ccccCCccEEEEeecC------CcEEEEEeeecccccccCCCCCCcceee
Q 037555 179 WAVENKSSVKQILALPPFNSSVTALSWVG-LDRQKNHGFLAVGMES------GVIELWSISVNRTNDVSTPAPSTANIII 251 (298)
Q Consensus 179 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~l~~g~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~ 251 (298)
||+.+++... +..+...+..++|+| ++ ..|+....+ ..|.++|..... ..
T Consensus 173 ~d~~~g~~~~----l~~~~~~~~~~~~sp~dg-----~~l~~~~~~~~~~~~~~l~~~d~~~~~--------------~~ 229 (388)
T 3pe7_A 173 VDLKTGESTV----ILQENQWLGHPIYRPYDD-----STVAFCHEGPHDLVDARMWLINEDGTN--------------MR 229 (388)
T ss_dssp EETTTCCEEE----EEEESSCEEEEEEETTEE-----EEEEEEECSCTTTSSCSEEEEETTSCC--------------CE
T ss_pred EECCCCceEE----eecCCccccccEECCCCC-----CEEEEEEecCCCCCcceEEEEeCCCCc--------------eE
Confidence 9999876433 223556789999999 88 677666543 367777765431 12
Q ss_pred eeccCCccc--ceEEEEEeecCCCCCCCcceEEEeeeC-CC----cEEEeEec
Q 037555 252 RFDPFACHV--AAVNRMAWKTHEKPKNSRTMQLASCGA-DN----TVRVFQVN 297 (298)
Q Consensus 252 ~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~l~s~~~-d~----~i~iw~~~ 297 (298)
.+. .+. ..+..+.|+||+ ..|+..+. ++ .|++||+.
T Consensus 230 ~l~---~~~~~~~~~~~~~spdg-------~~l~~~~~~~~~~~~~l~~~d~~ 272 (388)
T 3pe7_A 230 KVK---THAEGESCTHEFWVPDG-------SALVYVSYLKGSPDRFIYSADPE 272 (388)
T ss_dssp ESC---CCCTTEEEEEEEECTTS-------SCEEEEEEETTCCCEEEEEECTT
T ss_pred Eee---eCCCCcccccceECCCC-------CEEEEEecCCCCCcceEEEEecC
Confidence 221 222 467889999999 55544332 22 38888864
No 167
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.72 E-value=8.9e-15 Score=115.51 Aligned_cols=200 Identities=9% Similarity=0.117 Sum_probs=140.6
Q ss_pred CCCceEEEEE-cCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc-cccccEEEEEEcCCCCEEEEEeCCCeEEEEEe
Q 037555 55 HGNELFSLCC-DHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ-SHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAI 132 (298)
Q Consensus 55 h~~~v~~~~~-s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 132 (298)
|...+.++++ .+++.++++.. ..++.|.+|+ .+++.+..+. .+...+.+++++|+++++++...++.|.+|+.
T Consensus 75 ~~~~p~~i~~~~~~g~l~v~~~----~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 149 (286)
T 1q7f_A 75 QLLYPNRVAVVRNSGDIIVTER----SPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ 149 (286)
T ss_dssp CBSSEEEEEEETTTTEEEEEEC----GGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred cccCceEEEEEcCCCeEEEEcC----CCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC
Confidence 4457899999 46777666652 1268899999 4566665553 24457899999999998888888899999996
Q ss_pred ccCCCCccceeeeEEee--ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555 133 QRTGTGEIDYQLIARQE--AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR 210 (298)
Q Consensus 133 ~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (298)
.. .....+. .+...+..++++++++++++...++.|++||... +.+..+ ...++...+..+++++++
T Consensus 150 ~g--------~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~-~~~g~~~~p~~i~~d~~G- 218 (286)
T 1q7f_A 150 NG--------NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QYLRQI-GGEGITNYPIGVGINSNG- 218 (286)
T ss_dssp TS--------CEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CEEEEE-SCTTTSCSEEEEEECTTC-
T ss_pred CC--------CEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-CEEEEE-ccCCccCCCcEEEECCCC-
Confidence 42 2233332 3345689999999998888777889999999754 333322 112223568899999988
Q ss_pred cCCccEEEEeecCC-cEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCC
Q 037555 211 QKNHGFLAVGMESG-VIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADN 289 (298)
Q Consensus 211 ~~~~~~l~~g~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~ 289 (298)
.++++...++ .|.+|+.. + +.+..+.. ......+.+++++|++ .++++ +.|+
T Consensus 219 ----~l~v~~~~~~~~i~~~~~~-g-------------~~~~~~~~-~~~~~~~~~i~~~~~g-------~l~vs-~~~~ 271 (286)
T 1q7f_A 219 ----EILIADNHNNFNLTIFTQD-G-------------QLISALES-KVKHAQCFDVALMDDG-------SVVLA-SKDY 271 (286)
T ss_dssp ----CEEEEECSSSCEEEEECTT-S-------------CEEEEEEE-SSCCSCEEEEEEETTT-------EEEEE-ETTT
T ss_pred ----CEEEEeCCCCEEEEEECCC-C-------------CEEEEEcc-cCCCCcceeEEECCCC-------cEEEE-CCCC
Confidence 6777777775 99999853 2 33333321 1123347899999999 77777 5799
Q ss_pred cEEEeEec
Q 037555 290 TVRVFQVN 297 (298)
Q Consensus 290 ~i~iw~~~ 297 (298)
+|++|++.
T Consensus 272 ~v~v~~~~ 279 (286)
T 1q7f_A 272 RLYIYRYV 279 (286)
T ss_dssp EEEEEECS
T ss_pred eEEEEEcc
Confidence 99999874
No 168
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.71 E-value=3.8e-15 Score=120.13 Aligned_cols=217 Identities=12% Similarity=0.073 Sum_probs=147.9
Q ss_pred CCCCceEEeccCCCceEEEEEcCCCCEEEeEeccCC-------------------CCceEEEEEEcCCceeeeccc-ccc
Q 037555 44 TLWPESHKLYGHGNELFSLCCDHQGKLVASSCKAQS-------------------TAAAEIWLWEVGSWKAMGRLQ-SHS 103 (298)
Q Consensus 44 ~~~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~-------------------~~d~~i~vw~~~~~~~~~~~~-~~~ 103 (298)
..||.. ...-+.|.+++++|+|+++++...+.. ..++.|.+||..+++.+..+. .+-
T Consensus 14 ~~wp~~---~~~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~ 90 (329)
T 3fvz_A 14 LDWPGV---YLLPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLF 90 (329)
T ss_dssp TTCGGG---GCCCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTC
T ss_pred cCCchh---ceecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCcc
Confidence 456653 223567999999999999988754100 011479999998888766554 344
Q ss_pred ccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEe---------eccCCceEEEEEcc-CCCEEEEee-C
Q 037555 104 LTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQ---------EAHKRIIWSCSWNP-FGHEFATGS-R 172 (298)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~~-~~~~l~~~~-~ 172 (298)
.....++++|+|+++++...++.|++|+..... ..+..+ ..+-.....++++| +++++++.+ .
T Consensus 91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~------~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~ 164 (329)
T 3fvz_A 91 YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE------GPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC 164 (329)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEECTTCSS------CCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS
T ss_pred CCceEEEECCCCCEEEEECCCCEEEEEeCCCCe------EEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC
Confidence 578899999999988888889999999975321 022222 22334678999999 788777776 6
Q ss_pred CCeEEEEEccCCcceeeeeec-------CCCCCceEEEEEeec-cccCCccEEEEeecCCcEEEEEeeecccccccCCCC
Q 037555 173 DKTVKIWAVENKSSVKQILAL-------PPFNSSVTALSWVGL-DRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAP 244 (298)
Q Consensus 173 dg~i~~wd~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~-~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~ 244 (298)
++.|++||. ++..+..+... ...-..+..++++|+ + .++++...++.|++|+..++
T Consensus 165 ~~~I~~~~~-~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g-----~l~v~d~~~~~I~~~~~~~G---------- 228 (329)
T 3fvz_A 165 NSRIVQFSP-SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLD-----QLCVADRENGRIQCFKTDTK---------- 228 (329)
T ss_dssp CCEEEEECT-TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTT-----EEEEEETTTTEEEEEETTTC----------
T ss_pred CCeEEEEcC-CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCC-----EEEEEECCCCEEEEEECCCC----------
Confidence 899999994 45544422111 112234789999998 5 67777778899999998755
Q ss_pred CCcceeeeeccCCcccceEEEEEeec------CCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 245 STANIIIRFDPFACHVAAVNRMAWKT------HEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
+.+..+. ...+...+..++|+| ++ ..+++...+..|++|++
T Consensus 229 ---~~~~~~~-~~~~~~~~~~~~~~pg~~~~~~g-------~~~v~~~~~~~v~~~~~ 275 (329)
T 3fvz_A 229 ---EFVREIK-HASFGRNVFAISYIPGFLFAVNG-------KPYFGDQEPVQGFVMNF 275 (329)
T ss_dssp ---CEEEEEC-CTTTTTCEEEEEEETTEEEEEEC-------CCCTTCSCCCCEEEEET
T ss_pred ---cEEEEEe-ccccCCCcceeeecCCEEEEeCC-------CEEeccCCCcEEEEEEc
Confidence 4444443 234566788899998 33 33333344557888874
No 169
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.71 E-value=2.9e-16 Score=138.49 Aligned_cols=211 Identities=8% Similarity=0.047 Sum_probs=140.5
Q ss_pred eEEeccCCCceE---------EEEEc--CCCCE-EEeEeccCCCCceEEEEEEcC--C-ceeeecccc-----ccccEEE
Q 037555 49 SHKLYGHGNELF---------SLCCD--HQGKL-VASSCKAQSTAAAEIWLWEVG--S-WKAMGRLQS-----HSLTVTQ 108 (298)
Q Consensus 49 ~~~~~~h~~~v~---------~~~~s--~~~~~-l~~~~~~~~~~d~~i~vw~~~--~-~~~~~~~~~-----~~~~v~~ 108 (298)
.+.+..|...+. ...|+ |||+. |+.++. .+..|.++++. . ++ ...+.. |...+..
T Consensus 60 ~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~----~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~ 134 (662)
T 3azo_A 60 EESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF----GDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWAD 134 (662)
T ss_dssp EEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT----TTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEE
T ss_pred cceeCCCCccccccccccCCccceeeeecCCCeEEEEEEC----CCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccC
Confidence 556667776666 66665 99998 777642 35678888876 2 43 334444 6778899
Q ss_pred EEEcCCCCEEEEEeCC----------CeEEEEEeccCCCCccceeeeEEee-ccCCceEEEEEccCCCEEEEeeCC----
Q 037555 109 IRFSHDDNLLLSVSRD----------RQFSVFAIQRTGTGEIDYQLIARQE-AHKRIIWSCSWNPFGHEFATGSRD---- 173 (298)
Q Consensus 109 ~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d---- 173 (298)
++|+|||+.|+.++.+ ..|++||+....... ......+. .+...+..++|+|||++|+.++.+
T Consensus 135 ~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~ 212 (662)
T 3azo_A 135 PVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD--RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRM 212 (662)
T ss_dssp EEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC--GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCC
T ss_pred cEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc--CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCC
Confidence 9999999999988876 589999987510000 01123334 455678889999999999988754
Q ss_pred ----CeEEEEEcc-CCc--ceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCc--EEEEEeeecccccccCCCC
Q 037555 174 ----KTVKIWAVE-NKS--SVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGV--IELWSISVNRTNDVSTPAP 244 (298)
Q Consensus 174 ----g~i~~wd~~-~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~--i~vwd~~~~~~~~~~~~~~ 244 (298)
..|++||+. ++. .... ....+...+..++|+|++ .+++++..++. |++||..++.
T Consensus 213 ~~~~~~i~~~d~~~~g~~~~~~~--l~~~~~~~~~~~~~spdg-----~l~~~~~~~~~~~l~~~~~~~~~--------- 276 (662)
T 3azo_A 213 PWEGTELKTARVTEDGRFADTRT--LLGGPEEAIAQAEWAPDG-----SLIVATDRTGWWNLHRVDPATGA--------- 276 (662)
T ss_dssp TTTCEEEEEEEECTTSCEEEEEE--EEEETTBCEEEEEECTTS-----CEEEEECTTSSCEEEEECTTTCC---------
T ss_pred CCCCcEEEEEEECCCCcccccEE--eCCCCCceEcceEECCCC-----eEEEEECCCCCeEEEEEECCCCc---------
Confidence 379999998 452 2221 222346788999999998 67788888884 4444443331
Q ss_pred CCcceeeeeccCCcccce--------EEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 245 STANIIIRFDPFACHVAA--------VNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
. ..+.. .+... +.+++|+|++ .++++++. +.++||.++
T Consensus 277 ----~-~~l~~--~~~~~~~p~w~~~~~~~~~~~~~-------~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 277 ----A-TQLCR--REEEFAGPLWTPGMRWFAPLANG-------LIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp ----E-EESSC--CSSBSSCCCCSTTCCSEEECTTS-------CEEEEEBS-SSCEEEEEE
T ss_pred ----e-eeccc--ccccccCccccccCceEeEeCCC-------EEEEEEEc-CccEEEEEE
Confidence 1 11111 11111 4568888988 78899888 999999653
No 170
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.70 E-value=2.8e-15 Score=133.74 Aligned_cols=173 Identities=10% Similarity=0.092 Sum_probs=116.0
Q ss_pred eEEeccCCCc-----eEEEEEcCCCCEEEeEeccCC----CCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEE
Q 037555 49 SHKLYGHGNE-----LFSLCCDHQGKLVASSCKAQS----TAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLL 119 (298)
Q Consensus 49 ~~~~~~h~~~-----v~~~~~s~~~~~l~~~~~~~~----~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 119 (298)
...+.+|... ...+.|||||++|+.++.+.. +..+.+.+||+.+++.. .+..|...+...+|+|||+.|+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la 127 (740)
T 4a5s_A 49 SVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLA 127 (740)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEE
T ss_pred EEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEE
Confidence 4445555533 234789999999999864210 11267889999988764 4666788899999999999998
Q ss_pred EEeCCCeEEEEEeccCCCCccceeeeEEeeccCCc-----------------eEEEEEccCCCEEEEeeCCC--------
Q 037555 120 SVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRI-----------------IWSCSWNPFGHEFATGSRDK-------- 174 (298)
Q Consensus 120 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----------------v~~~~~~~~~~~l~~~~~dg-------- 174 (298)
.+. ++.|++|++..+... .+ ...++... ...+.|+|||++|+.++.|.
T Consensus 128 ~~~-~~~i~~~~~~~~~~~-----~l-t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~ 200 (740)
T 4a5s_A 128 YVW-NNDIYVKIEPNLPSY-----RI-TWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY 200 (740)
T ss_dssp EEE-TTEEEEESSTTSCCE-----EC-CSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred EEE-CCeEEEEECCCCceE-----EE-cCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEE
Confidence 885 789999998764311 01 11122211 23589999999999875321
Q ss_pred ----------------------------eEEEEEccC---CcceeeeeecC------CCCCceEEEEEeeccccCCccEE
Q 037555 175 ----------------------------TVKIWAVEN---KSSVKQILALP------PFNSSVTALSWVGLDRQKNHGFL 217 (298)
Q Consensus 175 ----------------------------~i~~wd~~~---~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~l 217 (298)
.|++||+.+ ++..... .+. ++...+..++|+|++ +++
T Consensus 201 ~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~wspdg-----~~~ 274 (740)
T 4a5s_A 201 SFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI-QITAPASMLIGDHYLCDVTWATQE-----RIS 274 (740)
T ss_dssp EECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE-EECCCHHHHTSCEEEEEEEEEETT-----EEE
T ss_pred EeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE-EecCCccCCCCCeEEEEEEEeCCC-----eEE
Confidence 478889887 6321111 222 266779999999998 555
Q ss_pred EEeec----CCcEEEEEeeecc
Q 037555 218 AVGME----SGVIELWSISVNR 235 (298)
Q Consensus 218 ~~g~~----dg~i~vwd~~~~~ 235 (298)
+.... +..|++||+.++.
T Consensus 275 ~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 275 LQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp EEEEESSTTEEEEEEEEEETTT
T ss_pred EEEeCCCCCEEEEEEEECCCCc
Confidence 55432 3479999998763
No 171
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.68 E-value=6.9e-14 Score=110.36 Aligned_cols=200 Identities=7% Similarity=0.071 Sum_probs=142.4
Q ss_pred cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc------cccccEEEEEE-cCCCCEEEEEeC-CC
Q 037555 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ------SHSLTVTQIRF-SHDDNLLLSVSR-DR 125 (298)
Q Consensus 54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~------~~~~~v~~~~~-~~~~~~l~~~~~-dg 125 (298)
++-..+.++++++++.++++.. .++.|.+||.. ++.+..+. ++...+..+++ .++++++++... ++
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~-----~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~ 100 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADT-----NNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTH 100 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEG-----GGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGC
T ss_pred CccCCCceEEECCCCCEEEEEC-----CCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCC
Confidence 4556799999999999888773 47899999987 55554443 24457889999 467776666643 88
Q ss_pred eEEEEEeccCCCCccceeeeEEee-ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEE
Q 037555 126 QFSVFAIQRTGTGEIDYQLIARQE-AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALS 204 (298)
Q Consensus 126 ~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~ 204 (298)
.|.+|+.. ...+..+. .+...+..++++|+++++++...++.|.+||.. ++....+ ....+...+..++
T Consensus 101 ~i~~~d~~--------g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~-~~~~~~~~p~~i~ 170 (286)
T 1q7f_A 101 QIQIYNQY--------GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKF-GCSKHLEFPNGVV 170 (286)
T ss_dssp EEEEECTT--------SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE-ECTTTCSSEEEEE
T ss_pred EEEEECCC--------CcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEe-CCCCccCCcEEEE
Confidence 99999943 23333332 234568899999999988877788999999965 3433322 1123445689999
Q ss_pred EeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEe
Q 037555 205 WVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLAS 284 (298)
Q Consensus 205 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s 284 (298)
+++++ .++++...++.|++|+... ..+..+. ..++...+..|++++++ +++++
T Consensus 171 ~~~~g-----~l~v~~~~~~~i~~~~~~g--------------~~~~~~~-~~g~~~~p~~i~~d~~G-------~l~v~ 223 (286)
T 1q7f_A 171 VNDKQ-----EIFISDNRAHCVKVFNYEG--------------QYLRQIG-GEGITNYPIGVGINSNG-------EILIA 223 (286)
T ss_dssp ECSSS-----EEEEEEGGGTEEEEEETTC--------------CEEEEES-CTTTSCSEEEEEECTTC-------CEEEE
T ss_pred ECCCC-----CEEEEECCCCEEEEEcCCC--------------CEEEEEc-cCCccCCCcEEEECCCC-------CEEEE
Confidence 99988 6777777789999999643 2333332 12234568899999998 78888
Q ss_pred eeCCC-cEEEeEe
Q 037555 285 CGADN-TVRVFQV 296 (298)
Q Consensus 285 ~~~d~-~i~iw~~ 296 (298)
...++ .|++|+.
T Consensus 224 ~~~~~~~i~~~~~ 236 (286)
T 1q7f_A 224 DNHNNFNLTIFTQ 236 (286)
T ss_dssp ECSSSCEEEEECT
T ss_pred eCCCCEEEEEECC
Confidence 87776 9999974
No 172
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.68 E-value=4.6e-15 Score=122.22 Aligned_cols=244 Identities=9% Similarity=0.003 Sum_probs=152.8
Q ss_pred eeecCcccccccCCCCCcee-----eeccCCCcccccccC-------CC--C----ceEEe-ccCCCceEEEEEcCCCCE
Q 037555 10 ERHGNDGLDTLESVPDAVPA-----VFTEPPIEDQLAWHT-------LW--P----ESHKL-YGHGNELFSLCCDHQGKL 70 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~v~~-----~~~~~~~~~~~~~~~-------~~--~----~~~~~-~~h~~~v~~~~~s~~~~~ 70 (298)
+..+|..+..+..|...... ..++ |+++.++... +| + ....+ .++...+..+.|+|+|+.
T Consensus 16 ~~~~g~~~~~lt~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~ 94 (388)
T 3pe7_A 16 DASTGAQVTRLTPPDVTCHRNYFYQKCFT-RDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDA 94 (388)
T ss_dssp CTTTCCEEEECSCTTSCEECCCTTSCCBC-TTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSE
T ss_pred cCCCCcceEEecCCcccccchhhcCccCC-CCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCE
Confidence 44567777778777765544 5666 5555544431 33 1 22233 345455557889999999
Q ss_pred EEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEE--EcCCCCEEEEE----------------------eCCCe
Q 037555 71 VASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIR--FSHDDNLLLSV----------------------SRDRQ 126 (298)
Q Consensus 71 l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~----------------------~~dg~ 126 (298)
|+.++. ++.|++||+.+++....+..+...+.... ++|++.+++.. ..+..
T Consensus 95 l~~~~~-----~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (388)
T 3pe7_A 95 LFYVKD-----GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCR 169 (388)
T ss_dssp EEEEET-----TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEE
T ss_pred EEEEeC-----CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcce
Confidence 999953 67999999999887666555555554443 48999988743 23467
Q ss_pred EEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCC------CeEEEEEccCCcceeeeeecCCCC--
Q 037555 127 FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRD------KTVKIWAVENKSSVKQILALPPFN-- 197 (298)
Q Consensus 127 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~~-- 197 (298)
|.+||+.++. ...+..+...+..+.|+| +++.|+.+..+ ..|.++|....... .+..+.
T Consensus 170 l~~~d~~~g~--------~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~----~l~~~~~~ 237 (388)
T 3pe7_A 170 LMRVDLKTGE--------STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR----KVKTHAEG 237 (388)
T ss_dssp EEEEETTTCC--------EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE----ESCCCCTT
T ss_pred EEEEECCCCc--------eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE----EeeeCCCC
Confidence 8899987632 333445667789999999 99988887753 36888887765432 232233
Q ss_pred CceEEEEEeeccccCCccEEEE-eecCC----cEEEEEeeecccccccCCCCCCcceeeeeccCCcccce---EEEEEee
Q 037555 198 SSVTALSWVGLDRQKNHGFLAV-GMESG----VIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAA---VNRMAWK 269 (298)
Q Consensus 198 ~~v~~~~~~~~~~~~~~~~l~~-g~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~~~~~~ 269 (298)
..+..++|+|++ ..|+. +..++ .|++||+.+++. ..+..+ .++... ...+.|+
T Consensus 238 ~~~~~~~~spdg-----~~l~~~~~~~~~~~~~l~~~d~~~g~~-----------~~l~~~---~~~~~~~~~~~~~~~s 298 (388)
T 3pe7_A 238 ESCTHEFWVPDG-----SALVYVSYLKGSPDRFIYSADPETLEN-----------RQLTSM---PACSHLMSNYDGSLMV 298 (388)
T ss_dssp EEEEEEEECTTS-----SCEEEEEEETTCCCEEEEEECTTTCCE-----------EEEEEE---CCEEEEEECTTSSEEE
T ss_pred cccccceECCCC-----CEEEEEecCCCCCcceEEEEecCCCce-----------EEEEcC---CCceeeeecCCCCeEc
Confidence 357788999998 55544 43322 399999887632 122221 111111 1123699
Q ss_pred cCCCCCCCcceEEEee---------eCCCcEEEeEec
Q 037555 270 THEKPKNSRTMQLASC---------GADNTVRVFQVN 297 (298)
Q Consensus 270 ~~~~~~~~~~~~l~s~---------~~d~~i~iw~~~ 297 (298)
|++ ..|+.. ..+..|++||+.
T Consensus 299 pdg-------~~l~~~~~~~~~~~~~~~~~i~~~d~~ 328 (388)
T 3pe7_A 299 GDG-------SDAPVDVQDDSGYKIENDPFLYVFNMK 328 (388)
T ss_dssp EEE-------CCC------------CCCCEEEEEETT
T ss_pred cCC-------CcceeEeeeccccccCCCCEEEEEecc
Confidence 998 555533 456689999864
No 173
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.66 E-value=3.7e-14 Score=125.99 Aligned_cols=209 Identities=8% Similarity=-0.035 Sum_probs=138.7
Q ss_pred cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCe-------
Q 037555 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQ------- 126 (298)
Q Consensus 54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~------- 126 (298)
+|...+..++|||||++||.+....+.+...|++||+.+++.+.... ....+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~-~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-EEECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc-cCcccceEEEEeCCCEEEEEEECCcccccccc
Confidence 34456889999999999998865433333499999999988765322 2223678999999999999887765
Q ss_pred ---------EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-----CCeEEEEEccC------Cc-
Q 037555 127 ---------FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-----DKTVKIWAVEN------KS- 185 (298)
Q Consensus 127 ---------i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~~wd~~~------~~- 185 (298)
|++|++.+.... ...+.....+...+..+.|+|++++|+..+. +..|++||+.+ +.
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~---~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 277 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSE---DILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL 277 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGG---CEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC
T ss_pred ccccCCCCEEEEEECCCCccc---ceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc
Confidence 999998764311 1122232334556789999999999888764 56899999986 42
Q ss_pred ceeeeeecCCCCCceEEEEEeeccccCCccEEEEeec-C---CcEEEEEeeecccccccCCCCCCcceeeeeccCCccc-
Q 037555 186 SVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGME-S---GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHV- 260 (298)
Q Consensus 186 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~-d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 260 (298)
... .+..+...+.. .|+|++ ..|+..+. + +.|.+||+.+... .....+. .|.
T Consensus 278 ~~~---~l~~~~~~~~~-~~s~dg-----~~l~~~s~~~~~~~~l~~~d~~~~~~-----------~~~~~l~---~~~~ 334 (710)
T 2xdw_A 278 KWV---KLIDNFEGEYD-YVTNEG-----TVFTFKTNRHSPNYRLINIDFTDPEE-----------SKWKVLV---PEHE 334 (710)
T ss_dssp CCE---EEECSSSSCEE-EEEEET-----TEEEEEECTTCTTCEEEEEETTSCCG-----------GGCEEEE---CCCS
T ss_pred ceE---EeeCCCCcEEE-EEeccC-----CEEEEEECCCCCCCEEEEEeCCCCCc-----------ccceecc---CCCC
Confidence 233 23334444444 578887 44544443 3 3688888865421 0112221 232
Q ss_pred -ceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 261 -AAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 261 -~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
..+.+++|++++ .++++...|+..+||-+
T Consensus 335 ~~~~~~~~~~~~~-------~lv~~~~~~g~~~l~~~ 364 (710)
T 2xdw_A 335 KDVLEWVACVRSN-------FLVLCYLHDVKNTLQLH 364 (710)
T ss_dssp SCEEEEEEEETTT-------EEEEEEEETTEEEEEEE
T ss_pred CCeEEEEEEEcCC-------EEEEEEEECCEEEEEEE
Confidence 368889999777 78889988986655543
No 174
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.66 E-value=1.4e-14 Score=117.72 Aligned_cols=176 Identities=10% Similarity=0.061 Sum_probs=128.9
Q ss_pred ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce---------eee-ccccccccEEEEEEcCCCCEEEEEeCCCeE
Q 037555 58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK---------AMG-RLQSHSLTVTQIRFSHDDNLLLSVSRDRQF 127 (298)
Q Consensus 58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~---------~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 127 (298)
+++.+++++...++++|+. + .+.+|++++.+ ... ....+.. |+.++| ++++|+++ .++.|
T Consensus 39 ~~nlLais~~~gll~a~~~-----~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l 108 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASG-----S-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNAL 108 (388)
T ss_dssp CCBCEEEETTTTEEEEEET-----T-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEE
T ss_pred cccEEEEcCCCCEEEEeCC-----C-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcE
Confidence 6899999999999999963 4 56679976543 111 1223556 999999 88999998 88999
Q ss_pred EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555 128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG 207 (298)
Q Consensus 128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (298)
++||+.... .......+...+..+.+.+. .+++++.||.|.+||+.+..... +...|++++|+|
T Consensus 109 ~v~dv~sl~-------~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-------~~~~Vs~v~WSp 172 (388)
T 1xip_A 109 YSLDLEELS-------EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-------LAQNVTSFDVTN 172 (388)
T ss_dssp EEEESSSTT-------CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-------EEESEEEEEECS
T ss_pred EEEEchhhh-------ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-------ccCCceEEEEcC
Confidence 999998743 23344556677888777654 38889999999999999766532 345799999999
Q ss_pred ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeee------ccCCcccceEEEEEeecCCCCCCCcceE
Q 037555 208 LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRF------DPFACHVAAVNRMAWKTHEKPKNSRTMQ 281 (298)
Q Consensus 208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 281 (298)
.+ ++.|..||.+++|+....... ....+ .+..+|...|.+|.|.+++ .+
T Consensus 173 kG-------~~vg~~dg~i~~~~~~~~~~~-----------~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~-------~f 227 (388)
T 1xip_A 173 SQ-------LAVLLKDRSFQSFAWRNGEME-----------KQFEFSLPSELEELPVEEYSPLSVTILSPQ-------DF 227 (388)
T ss_dssp SE-------EEEEETTSCEEEEEEETTEEE-----------EEEEECCCHHHHTSCTTTSEEEEEEESSSS-------EE
T ss_pred Cc-------eEEEEcCCcEEEEcCCCcccc-----------ccceecCCcccccccCCCeeEEEEEEecCC-------eE
Confidence 86 577889999999988765210 02222 1112477899999999988 66
Q ss_pred EEe
Q 037555 282 LAS 284 (298)
Q Consensus 282 l~s 284 (298)
|++
T Consensus 228 lv~ 230 (388)
T 1xip_A 228 LAV 230 (388)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 175
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.66 E-value=1.6e-13 Score=110.68 Aligned_cols=213 Identities=14% Similarity=0.063 Sum_probs=142.4
Q ss_pred ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCC---
Q 037555 48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD--- 124 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--- 124 (298)
....+..+...+.+++|+++|++++++ ..++.|.+||..+++.......+...+.+++++|+++++++...+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~-----~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~ 110 (333)
T 2dg1_A 36 PWLEISKKGLQLEGLNFDRQGQLFLLD-----VFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKS 110 (333)
T ss_dssp EEEEEESSCCCEEEEEECTTSCEEEEE-----TTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSS
T ss_pred eeEEEeccCccccCcEECCCCCEEEEE-----CCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCC
Confidence 345566777788999999999977777 447899999998776654443456789999999999988877766
Q ss_pred -CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC------CCeEEEEEccCCcceeeeeecCCCC
Q 037555 125 -RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR------DKTVKIWAVENKSSVKQILALPPFN 197 (298)
Q Consensus 125 -g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~~~~~~~~ 197 (298)
+.|.+||...... ........+...+..++++|+++++++... .+.|..+|..+.+... + ....
T Consensus 111 ~~~i~~~d~~~~~~-----~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~---~~~~ 181 (333)
T 2dg1_A 111 TGGIFAATENGDNL-----QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-I---IQNI 181 (333)
T ss_dssp CCEEEEECTTSCSC-----EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-E---EEEE
T ss_pred CceEEEEeCCCCEE-----EEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE-e---ecCC
Confidence 6899999775321 101111123456899999999987776653 3556666665443322 1 1123
Q ss_pred CceEEEEEeeccccCCccEE-EEeecCCcEEEEEeeecccccccCCCCCCccee--eeeccCCcccceEEEEEeecCCCC
Q 037555 198 SSVTALSWVGLDRQKNHGFL-AVGMESGVIELWSISVNRTNDVSTPAPSTANII--IRFDPFACHVAAVNRMAWKTHEKP 274 (298)
Q Consensus 198 ~~v~~~~~~~~~~~~~~~~l-~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~ 274 (298)
..+..++|+|++ ..| ++...++.|.+|++....... ... ..+..+.++ ..+..+++++++
T Consensus 182 ~~~~~i~~~~dg-----~~l~v~~~~~~~i~~~d~~~~g~~~---------~~~~~~~~~~~~~~-~~~~~i~~d~~G-- 244 (333)
T 2dg1_A 182 SVANGIALSTDE-----KVLWVTETTANRLHRIALEDDGVTI---------QPFGATIPYYFTGH-EGPDSCCIDSDD-- 244 (333)
T ss_dssp SSEEEEEECTTS-----SEEEEEEGGGTEEEEEEECTTSSSE---------EEEEEEEEEECCSS-SEEEEEEEBTTC--
T ss_pred CcccceEECCCC-----CEEEEEeCCCCeEEEEEecCCCcCc---------ccccceEEEecCCC-CCCCceEECCCC--
Confidence 457889999988 544 555567899999986421000 000 111112222 467889999998
Q ss_pred CCCcceEEEeeeCCCcEEEeEe
Q 037555 275 KNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 275 ~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
+++++...++.|.+||.
T Consensus 245 -----~l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 245 -----NLYVAMYGQGRVLVFNK 261 (333)
T ss_dssp -----CEEEEEETTTEEEEECT
T ss_pred -----CEEEEEcCCCEEEEECC
Confidence 77777777889999975
No 176
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.64 E-value=4.9e-14 Score=114.28 Aligned_cols=189 Identities=12% Similarity=0.117 Sum_probs=122.2
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCC------------
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD------------ 124 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------------ 124 (298)
..+..+.|+|+|+.|+..+.+.......|.+|++.+++...... +.. +..++|+||++.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE-ESE-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 46888999999999998865321124568899998877655444 334 9999999999988887642
Q ss_pred ---------------CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCC-------eEEEEEcc
Q 037555 125 ---------------RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDK-------TVKIWAVE 182 (298)
Q Consensus 125 ---------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------~i~~wd~~ 182 (298)
..|.+||+..+ ..+..+.. . .+..+.|+|++ +++++..++ ...+|.+.
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~-------~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d 206 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESE-------EVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE 206 (347)
T ss_dssp CCCC---------CEEEEEEEETTTT-------EEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE
T ss_pred cceeecCcccccCccceEEEEECCCC-------eEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC
Confidence 56888888752 22233333 3 67889999999 777776542 34555544
Q ss_pred CCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecC--------CcEEEEEeeecccccccCCCCCCcceeeeec
Q 037555 183 NKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMES--------GVIELWSISVNRTNDVSTPAPSTANIIIRFD 254 (298)
Q Consensus 183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 254 (298)
+++ ...+ ..+ ..+..+ +|++ ..|+.++.+ ..|.+|| ++ .. ..+
T Consensus 207 ~~~-~~~l---~~~-~~~~~~--spdg-----~~l~~~~~~~~~~~~~~~~l~~~d--~~-------------~~-~~l- 257 (347)
T 2gop_A 207 DGK-EEKM---FEK-VSFYAV--DSDG-----ERILLYGKPEKKYMSEHNKLYIYD--GK-------------EV-MGI- 257 (347)
T ss_dssp TTE-EEEE---EEE-ESEEEE--EECS-----SCEEEEECCSSSCCCSSCEEEEEC--SS-------------CE-EES-
T ss_pred CCc-eEEe---ccC-cceeeE--CCCC-----CEEEEEEccccCCccccceEEEEC--CC-------------ce-Eec-
Confidence 333 3322 222 344443 8888 566665543 3677777 32 21 121
Q ss_pred cCCcccceEEE-EEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 255 PFACHVAAVNR-MAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 255 ~~~~~~~~v~~-~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
...+...+.. +.|+ + .++++++.++.++|| ++
T Consensus 258 -~~~~~~~~~~~~~~s-d--------g~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 258 -LDEVDRGVGQAKIKD-G--------KVYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp -STTCCSEEEEEEEET-T--------EEEEEEEETTEEEEE-EE
T ss_pred -cccCCcccCCccEEc-C--------cEEEEEecCCcEEEE-Ec
Confidence 2345667776 8887 5 377888888999998 63
No 177
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.64 E-value=4.7e-14 Score=125.01 Aligned_cols=209 Identities=10% Similarity=-0.051 Sum_probs=139.0
Q ss_pred cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceee-ec-cccccccEEEEEEcCCCCEEEEEeCCCe-----
Q 037555 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAM-GR-LQSHSLTVTQIRFSHDDNLLLSVSRDRQ----- 126 (298)
Q Consensus 54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~-~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~----- 126 (298)
+|...+..++|||||++||.+....++++..|++||+.+++.+ .. +.. .....++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG--GKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC--CTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc--ccccceEEecCCCEEEEEEecCCCCCcc
Confidence 4556799999999999999765433345689999999988765 21 211 11267999999999999988776
Q ss_pred --------EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCC----eEEEEEccCCcceeeeeecC
Q 037555 127 --------FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDK----TVKIWAVENKSSVKQILALP 194 (298)
Q Consensus 127 --------i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~~wd~~~~~~~~~~~~~~ 194 (298)
|++|++.+.... ..++.....+...+..+.|+|++++|+..+.++ .|.++|..++.. . .+.
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~---~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~---~l~ 268 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSK---DTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-R---LLV 268 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGG---CEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-E---EEE
T ss_pred ccCCCCCEEEEEECCCCchh---ceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-E---Eee
Confidence 999998764311 123333344556788999999999988887665 677776654433 3 222
Q ss_pred CCCCceEEEEEeeccccCCccEEEEee---cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecC
Q 037555 195 PFNSSVTALSWVGLDRQKNHGFLAVGM---ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTH 271 (298)
Q Consensus 195 ~~~~~v~~~~~~~~~~~~~~~~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 271 (298)
.+...+....+ +++ .+++.+. .++.|.+||+.++... ....+.. ......+.+++|+ +
T Consensus 269 ~~~~~~~~~~~-~~g-----~l~~~s~~~~~~~~l~~~d~~~~~~~-----------~~~~l~~-~~~~~~l~~~~~~-~ 329 (695)
T 2bkl_A 269 KGVGAKYEVHA-WKD-----RFYVLTDEGAPRQRVFEVDPAKPARA-----------SWKEIVP-EDSSASLLSVSIV-G 329 (695)
T ss_dssp ECSSCCEEEEE-ETT-----EEEEEECTTCTTCEEEEEBTTBCSGG-----------GCEEEEC-CCSSCEEEEEEEE-T
T ss_pred cCCCceEEEEe-cCC-----cEEEEECCCCCCCEEEEEeCCCCCcc-----------CCeEEec-CCCCCeEEEEEEE-C
Confidence 23445555555 665 5444433 2578999998664210 0112211 1124568888998 5
Q ss_pred CCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 272 EKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 272 ~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+ .++++...|+..+||.++
T Consensus 330 ~-------~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 330 G-------HLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp T-------EEEEEEEETTEEEEEEEE
T ss_pred C-------EEEEEEEECCEEEEEEEe
Confidence 5 789999999999998764
No 178
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.63 E-value=4e-15 Score=122.78 Aligned_cols=239 Identities=7% Similarity=-0.063 Sum_probs=147.5
Q ss_pred eeecCcccccccCCCCC-----ceeeeccCCCccccccc-------CCC------CceEEeccCCCceE-EEEEcCCCCE
Q 037555 10 ERHGNDGLDTLESVPDA-----VPAVFTEPPIEDQLAWH-------TLW------PESHKLYGHGNELF-SLCCDHQGKL 70 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~~~-------~~~------~~~~~~~~h~~~v~-~~~~s~~~~~ 70 (298)
+..+|..+..+..+... +..+.++ |+++.++.. .+| .....+..+...+. .+.|+|+|+.
T Consensus 16 d~~~g~~~~~l~~~~~~~~~~~~~~~~~S-pdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~ 94 (396)
T 3c5m_A 16 DSDTQVKVTRLTPTDIICHRNYFYQKCFT-QDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERA 94 (396)
T ss_dssp CTTTCCEEEECSCTTSCEECCCTTSCCBC-TTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSE
T ss_pred cCCCCcceEEEecCCCCccceeeecCcCC-CCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCE
Confidence 45667666666655443 5666676 555554432 122 12334444443333 4789999999
Q ss_pred EEeEeccCCCCceEEEEEEcCCceeeeccccccccEEE-------------------EEEcCCCCEEEEE-----eCCCe
Q 037555 71 VASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQ-------------------IRFSHDDNLLLSV-----SRDRQ 126 (298)
Q Consensus 71 l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~dg~ 126 (298)
|+.++. ++.|++|++.+++.......+...... +.|+|+++.++.. ..+..
T Consensus 95 l~~~~~-----~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~ 169 (396)
T 3c5m_A 95 FFYVKN-----ELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCR 169 (396)
T ss_dssp EEEEET-----TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEE
T ss_pred EEEEEc-----CCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcce
Confidence 998854 668999999887765444433332222 3567777766554 35678
Q ss_pred EEEEEeccCCCCccceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCC------CeEEEEEccCCcceeeeeecCCC--C
Q 037555 127 FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRD------KTVKIWAVENKSSVKQILALPPF--N 197 (298)
Q Consensus 127 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d------g~i~~wd~~~~~~~~~~~~~~~~--~ 197 (298)
|.+||+..+. . ..+..+...+..+.|+| ++..|+..+.+ ..|.+||+...+... +..+ .
T Consensus 170 l~~~d~~~g~-------~-~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~----l~~~~~~ 237 (396)
T 3c5m_A 170 LIKVDIETGE-------L-EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK----IKEHAEG 237 (396)
T ss_dssp EEEEETTTCC-------E-EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE----SSCCCTT
T ss_pred EEEEECCCCc-------E-EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE----eeccCCC
Confidence 8999987632 2 22234667789999999 78877776643 368888887654322 2222 2
Q ss_pred CceEEEEEeeccccCCccEEEEeecC-----CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeec-C
Q 037555 198 SSVTALSWVGLDRQKNHGFLAVGMES-----GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKT-H 271 (298)
Q Consensus 198 ~~v~~~~~~~~~~~~~~~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 271 (298)
..+..++|+|++ ..|+.++.+ +.|++||+.++. .. .+....+ .. +.|+| +
T Consensus 238 ~~~~~~~~spdg-----~~l~~~~~~~~~~~~~l~~~d~~~g~-------------~~-~l~~~~~----~~-~~~s~~d 293 (396)
T 3c5m_A 238 ESCTHEFWIPDG-----SAMAYVSYFKGQTDRVIYKANPETLE-------------NE-EVMVMPP----CS-HLMSNFD 293 (396)
T ss_dssp EEEEEEEECTTS-----SCEEEEEEETTTCCEEEEEECTTTCC-------------EE-EEEECCS----EE-EEEECSS
T ss_pred ccccceEECCCC-----CEEEEEecCCCCccceEEEEECCCCC-------------eE-EeeeCCC----CC-CCccCCC
Confidence 357889999998 556555433 349999987652 11 1111212 22 88999 9
Q ss_pred CCCCCCcceEEEeee----------------CCCcEEEeEec
Q 037555 272 EKPKNSRTMQLASCG----------------ADNTVRVFQVN 297 (298)
Q Consensus 272 ~~~~~~~~~~l~s~~----------------~d~~i~iw~~~ 297 (298)
+ .+|++++ .+..|++||+.
T Consensus 294 g-------~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~ 328 (396)
T 3c5m_A 294 G-------SLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK 328 (396)
T ss_dssp S-------SEEEEEECCC----------CCCCCCEEEEEETT
T ss_pred C-------ceEEEecCCcceeeccccccccCCCCcEEEEecc
Confidence 8 6777654 34678888863
No 179
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.63 E-value=3.2e-13 Score=109.52 Aligned_cols=193 Identities=10% Similarity=0.113 Sum_probs=126.2
Q ss_pred EEeccCCCceEEEEEcCCCCEEEeEeccCC----------------------CCceEEEEEEcCCceeeeccccccccEE
Q 037555 50 HKLYGHGNELFSLCCDHQGKLVASSCKAQS----------------------TAAAEIWLWEVGSWKAMGRLQSHSLTVT 107 (298)
Q Consensus 50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~----------------------~~d~~i~vw~~~~~~~~~~~~~~~~~v~ 107 (298)
..+..+.. +..++|+|+|+.|+.++.+.. .....|++|++.+++.+..+.. . .+.
T Consensus 98 ~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~ 174 (347)
T 2gop_A 98 KKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFS 174 (347)
T ss_dssp EEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTC
T ss_pred EEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-Ccc
Confidence 33444444 899999999999998864200 0136899999988876455554 3 788
Q ss_pred EEEEcCCCCEEEEEeCCC-------eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC-------
Q 037555 108 QIRFSHDDNLLLSVSRDR-------QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD------- 173 (298)
Q Consensus 108 ~~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------- 173 (298)
.+.|+|+| +++++..++ ...+|.+.. ... ..+..+ ..+..+ +|+++.|+.++.+
T Consensus 175 ~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~-------~~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~ 242 (347)
T 2gop_A 175 SGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWED-------GKE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSE 242 (347)
T ss_dssp EEEEETTE-EEEEEECCCSSCCSSCCEEEEEEET-------TEE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCS
T ss_pred cccCCCCe-EEEEEecccccccccccccEEEeCC-------Cce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccc
Confidence 99999999 777776542 455665552 121 222223 444444 9999988887754
Q ss_pred -CeEEEEEccCCcceeeeeecCCCCCceEE-EEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceee
Q 037555 174 -KTVKIWAVENKSSVKQILALPPFNSSVTA-LSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIII 251 (298)
Q Consensus 174 -g~i~~wd~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 251 (298)
..|.+|| +++... ....+...+.. +.|+ + .++++++.++.++|| +.++ .. .
T Consensus 243 ~~~l~~~d--~~~~~~---l~~~~~~~~~~~~~~s-d------g~~~~~~~~~~~~l~-~~~g-------------~~-~ 295 (347)
T 2gop_A 243 HNKLYIYD--GKEVMG---ILDEVDRGVGQAKIKD-G------KVYFTLFEEGSVNLY-IWDG-------------EI-K 295 (347)
T ss_dssp SCEEEEEC--SSCEEE---SSTTCCSEEEEEEEET-T------EEEEEEEETTEEEEE-EESS-------------SE-E
T ss_pred cceEEEEC--CCceEe---ccccCCcccCCccEEc-C------cEEEEEecCCcEEEE-EcCC-------------ce-E
Confidence 3688888 443322 33445667776 8887 4 378888899999999 8733 22 2
Q ss_pred eeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcE-EEeEe
Q 037555 252 RFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTV-RVFQV 296 (298)
Q Consensus 252 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i-~iw~~ 296 (298)
.+. .+...|.+++|+| . ++++++.++.. .+|.+
T Consensus 296 ~~~---~~~~~v~~~~~s~-~--------~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 296 PIA---KGRHWIMGFDVDE-I--------VVYLKETATRLRELFTW 329 (347)
T ss_dssp EEE---CSSSEEEEEEESS-S--------EEEEEECSSSCCEEEEE
T ss_pred EEe---cCCCeEEeeeeeC-c--------EEEEEcCCCChHHheEe
Confidence 221 2467899999999 6 55666656554 77765
No 180
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.62 E-value=1.4e-13 Score=109.26 Aligned_cols=205 Identities=12% Similarity=0.082 Sum_probs=137.3
Q ss_pred ceEEeccCCCceEEEEEcCCCC-EEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCe
Q 037555 48 ESHKLYGHGNELFSLCCDHQGK-LVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQ 126 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 126 (298)
.+..+..+.....+++|+|+++ +++++ ..++.|.+|+..++ ...+..+...+.+++++|+|+++++...++.
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~-----~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~ 91 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPARSAVIFSD-----VRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRR 91 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEE-----GGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTE
T ss_pred cEEEEecCCccccCCeEeCCCCEEEEEe-----CCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCe
Confidence 3455666677788999999998 66666 34789999999876 5556667778999999999998887777789
Q ss_pred EEEEEeccCCCCccceeeeEE-ee-ccCCceEEEEEccCCCEEEE----ee-------------CCCeEEEEEccCCcce
Q 037555 127 FSVFAIQRTGTGEIDYQLIAR-QE-AHKRIIWSCSWNPFGHEFAT----GS-------------RDKTVKIWAVENKSSV 187 (298)
Q Consensus 127 i~iwd~~~~~~~~~~~~~~~~-~~-~~~~~v~~~~~~~~~~~l~~----~~-------------~dg~i~~wd~~~~~~~ 187 (298)
|.+||..++. ...+.. .. .....+..++++|+++++++ ++ ..+.|..++.. ++ .
T Consensus 92 i~~~d~~~g~-----~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~ 164 (296)
T 3e5z_A 92 LERQREPGGE-----WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-L 164 (296)
T ss_dssp EEEECSTTCC-----EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-E
T ss_pred EEEEcCCCCc-----EEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-E
Confidence 9999986532 111111 11 11234678999999998887 33 13456666554 32 2
Q ss_pred eeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEee-ecccccccCCCCCCcceeeeeccCCcccceEEEE
Q 037555 188 KQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSIS-VNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRM 266 (298)
Q Consensus 188 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 266 (298)
. .+.........++|+|++ ..+++.+.++.|++|++. .+... .....+ ..+...+..+
T Consensus 165 ~---~~~~~~~~~~gi~~s~dg-----~~lv~~~~~~~i~~~~~~~~g~~~----------~~~~~~---~~~~~~p~~i 223 (296)
T 3e5z_A 165 S---APIRDRVKPNGLAFLPSG-----NLLVSDTGDNATHRYCLNARGETE----------YQGVHF---TVEPGKTDGL 223 (296)
T ss_dssp E---EEECCCSSEEEEEECTTS-----CEEEEETTTTEEEEEEECSSSCEE----------EEEEEE---CCSSSCCCSE
T ss_pred E---EeecCCCCCccEEECCCC-----CEEEEeCCCCeEEEEEECCCCcCc----------CCCeEe---eCCCCCCCeE
Confidence 2 222345567899999998 566777778999999986 22100 001112 1244556778
Q ss_pred EeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 267 AWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 267 ~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
++++++ +++++. ++.|.+|+.
T Consensus 224 ~~d~~G-------~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 224 RVDAGG-------LIWASA--GDGVHVLTP 244 (296)
T ss_dssp EEBTTS-------CEEEEE--TTEEEEECT
T ss_pred EECCCC-------CEEEEc--CCeEEEECC
Confidence 898888 665555 677888874
No 181
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.62 E-value=2.3e-15 Score=124.20 Aligned_cols=199 Identities=8% Similarity=0.019 Sum_probs=128.1
Q ss_pred eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCC
Q 037555 59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTG 138 (298)
Q Consensus 59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 138 (298)
+..++|+|+|+.|+..... ..+..|.+|++.+++.......+......+.|+|||+.|+.++.++.|++|++....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~--~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~-- 113 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDF--DGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLE-- 113 (396)
T ss_dssp TTSCCBCTTSCEEEEEECT--TSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC--
T ss_pred eecCcCCCCCCEEEEEEec--CCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCC--
Confidence 7788999999998877542 124589999998887654443333323347899999999999999999999987632
Q ss_pred ccceeeeEEeeccCCceEE-------------------EEEccCCCEEEEe-----eCCCeEEEEEccCCcceeeeeecC
Q 037555 139 EIDYQLIARQEAHKRIIWS-------------------CSWNPFGHEFATG-----SRDKTVKIWAVENKSSVKQILALP 194 (298)
Q Consensus 139 ~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~l~~~-----~~dg~i~~wd~~~~~~~~~~~~~~ 194 (298)
.......+...... +.|+|+++.++.. ..+..|.+||+.+++.... .
T Consensus 114 -----~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~----~ 184 (396)
T 3c5m_A 114 -----EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVI----H 184 (396)
T ss_dssp -----EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEE----E
T ss_pred -----cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEee----c
Confidence 22222222221111 3456777666544 3566899999988765431 1
Q ss_pred CCCCceEEEEEee-ccccCCccEEEEeecC------CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEE
Q 037555 195 PFNSSVTALSWVG-LDRQKNHGFLAVGMES------GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMA 267 (298)
Q Consensus 195 ~~~~~v~~~~~~~-~~~~~~~~~l~~g~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 267 (298)
.+...+..+.|+| ++ ..|+..+.+ ..|.+|++.... ...+.. ......+..+.
T Consensus 185 ~~~~~~~~~~~sp~dg-----~~l~~~~~~~~~~~~~~l~~~d~~~~~--------------~~~l~~-~~~~~~~~~~~ 244 (396)
T 3c5m_A 185 QDTAWLGHPIYRPFDD-----STVGFCHEGPHDLVDARMWLVNEDGSN--------------VRKIKE-HAEGESCTHEF 244 (396)
T ss_dssp EESSCEEEEEEETTEE-----EEEEEEECSCSSSCSCCCEEEETTSCC--------------CEESSC-CCTTEEEEEEE
T ss_pred cCCcccccceECCCCC-----CEEEEEecCCCCCCCceEEEEECCCCc--------------eeEeec-cCCCccccceE
Confidence 3566788999999 66 556555443 357777765431 112211 01134688899
Q ss_pred eecCCCCCCCcceEEEeeeCC-----CcEEEeEec
Q 037555 268 WKTHEKPKNSRTMQLASCGAD-----NTVRVFQVN 297 (298)
Q Consensus 268 ~~~~~~~~~~~~~~l~s~~~d-----~~i~iw~~~ 297 (298)
|+|++ .+|+.++.+ +.|++||+.
T Consensus 245 ~spdg-------~~l~~~~~~~~~~~~~l~~~d~~ 272 (396)
T 3c5m_A 245 WIPDG-------SAMAYVSYFKGQTDRVIYKANPE 272 (396)
T ss_dssp ECTTS-------SCEEEEEEETTTCCEEEEEECTT
T ss_pred ECCCC-------CEEEEEecCCCCccceEEEEECC
Confidence 99999 666666543 448999863
No 182
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.61 E-value=4e-13 Score=109.60 Aligned_cols=84 Identities=7% Similarity=0.082 Sum_probs=63.1
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEecc-----CCCCceEEEEEEcCCceeeeccccc------cccEEEEEEcCCCCE
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKA-----QSTAAAEIWLWEVGSWKAMGRLQSH------SLTVTQIRFSHDDNL 117 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~-----~~~~d~~i~vw~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~ 117 (298)
+..+..+..+ .++|+|+|++|+++... ++..++.|.+||..+++.+..+... ......++++|||++
T Consensus 44 ~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~ 121 (361)
T 2oiz_A 44 LGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKF 121 (361)
T ss_dssp EEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSE
T ss_pred EEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCE
Confidence 4555555555 89999999999988520 0013678999999988887776532 234567999999999
Q ss_pred EEEEeC--CCeEEEEEecc
Q 037555 118 LLSVSR--DRQFSVFAIQR 134 (298)
Q Consensus 118 l~~~~~--dg~i~iwd~~~ 134 (298)
|+++.. ++.|.+||+.+
T Consensus 122 l~v~n~~~~~~v~v~d~~~ 140 (361)
T 2oiz_A 122 IVLQNASPATSIGIVDVAK 140 (361)
T ss_dssp EEEEEESSSEEEEEEETTT
T ss_pred EEEECCCCCCeEEEEECCC
Confidence 998874 58999999986
No 183
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.61 E-value=6.2e-13 Score=105.46 Aligned_cols=229 Identities=10% Similarity=0.044 Sum_probs=145.3
Q ss_pred CcccccccCCCCCceeeeccCCCcc-ccccc----C--CCC---ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCce
Q 037555 14 NDGLDTLESVPDAVPAVFTEPPIED-QLAWH----T--LWP---ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAA 83 (298)
Q Consensus 14 ~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~----~--~~~---~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~ 83 (298)
+..+..+..+......+++. |.+. .+... . .|+ ....+..+...+.+++++++|+++++. ..++
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d-~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~-----~~~~ 90 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYV-PARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACS-----HGLR 90 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEE-GGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEE-----TTTT
T ss_pred CCcEEEEecCCccccCCeEe-CCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEe-----cCCC
Confidence 44455555555566677777 4444 22222 1 121 145566677789999999999988776 3467
Q ss_pred EEEEEEcCCceeeeccccc----cccEEEEEEcCCCCEEEEEeC-----------------CCeEEEEEeccCCCCccce
Q 037555 84 EIWLWEVGSWKAMGRLQSH----SLTVTQIRFSHDDNLLLSVSR-----------------DRQFSVFAIQRTGTGEIDY 142 (298)
Q Consensus 84 ~i~vw~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~-----------------dg~i~iwd~~~~~~~~~~~ 142 (298)
.|.+||..+++........ ...+..++++|+|+++++.+. .+.|..++.. .
T Consensus 91 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g------ 162 (296)
T 3e5z_A 91 RLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--G------ 162 (296)
T ss_dssp EEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--S------
T ss_pred eEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC--C------
Confidence 8999999777654332211 234568999999998887321 2344444432 1
Q ss_pred eeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEcc-CCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee
Q 037555 143 QLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVE-NKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM 221 (298)
Q Consensus 143 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~ 221 (298)
. ...+..+......++|+|+++.+++.+.++.|.+||+. ++........+......+..+++++++ .++++.
T Consensus 163 ~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G-----~l~v~~- 235 (296)
T 3e5z_A 163 T-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGG-----LIWASA- 235 (296)
T ss_dssp C-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTS-----CEEEEE-
T ss_pred C-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCC-----CEEEEc-
Confidence 1 22233455667899999999988777778999999997 333201111222345567789999988 555554
Q ss_pred cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEee-cCCCCCCCcceEEEeeeCCC
Q 037555 222 ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWK-THEKPKNSRTMQLASCGADN 289 (298)
Q Consensus 222 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~l~s~~~d~ 289 (298)
++.|.+|+.. + +.+..+. .+.. +.+++|. |++ ..|+.++.++
T Consensus 236 -~~~v~~~~~~-g-------------~~~~~~~---~~~~-~~~~~f~~~d~-------~~L~v~t~~~ 278 (296)
T 3e5z_A 236 -GDGVHVLTPD-G-------------DELGRVL---TPQT-TSNLCFGGPEG-------RTLYMTVSTE 278 (296)
T ss_dssp -TTEEEEECTT-S-------------CEEEEEE---CSSC-CCEEEEESTTS-------CEEEEEETTE
T ss_pred -CCeEEEECCC-C-------------CEEEEEE---CCCC-ceeEEEECCCC-------CEEEEEcCCe
Confidence 7889999975 3 3334433 2444 8899994 777 6777777664
No 184
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.60 E-value=1.7e-13 Score=107.12 Aligned_cols=198 Identities=7% Similarity=-0.061 Sum_probs=138.5
Q ss_pred CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccC
Q 037555 56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRT 135 (298)
Q Consensus 56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 135 (298)
...+.+++++++|+++++. . ++.|.+|+................+..++++++++++++...++.|.+|+....
T Consensus 66 ~~~p~~i~~~~~g~l~v~~-----~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~ 139 (270)
T 1rwi_B 66 LYQPQGLAVDGAGTVYVTD-----F-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSK 139 (270)
T ss_dssp CCSCCCEEECTTCCEEEEE-----T-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCC
T ss_pred cCCcceeEECCCCCEEEEc-----C-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCc
Confidence 3568899999999966665 3 678999998755432222223356899999999998888777889999965431
Q ss_pred CCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCcc
Q 037555 136 GTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHG 215 (298)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 215 (298)
............+..++++++++++++...++.|.+||........ ........+.++++.+++ .
T Consensus 140 -------~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~---~~~~~~~~p~~i~~d~~g-----~ 204 (270)
T 1rwi_B 140 -------TQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV---LPFTDITAPWGIAVDEAG-----T 204 (270)
T ss_dssp -------SCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEE---CCCSSCCSEEEEEECTTC-----C
T ss_pred -------eeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEe---ecccCCCCceEEEECCCC-----C
Confidence 1111111223456889999999877777778899999987655432 222233568899999987 5
Q ss_pred EEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555 216 FLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ 295 (298)
Q Consensus 216 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~ 295 (298)
++++...++.|.+|+..... ... . ...+...+.++++++++ +++++...++.|++++
T Consensus 205 l~v~~~~~~~v~~~~~~~~~-------------~~~-~--~~~~~~~p~~i~~~~~g-------~l~v~~~~~~~v~~~~ 261 (270)
T 1rwi_B 205 VYVTEHNTNQVVKLLAGSTT-------------STV-L--PFTGLNTPLAVAVDSDR-------TVYVADRGNDRVVKLT 261 (270)
T ss_dssp EEEEETTTSCEEEECTTCSC-------------CEE-C--CCCSCSCEEEEEECTTC-------CEEEEEGGGTEEEEEC
T ss_pred EEEEECCCCcEEEEcCCCCc-------------cee-e--ccCCCCCceeEEECCCC-------CEEEEECCCCEEEEEc
Confidence 77777678899999875431 111 1 11233568899999999 8888888999999998
Q ss_pred ec
Q 037555 296 VN 297 (298)
Q Consensus 296 ~~ 297 (298)
+.
T Consensus 262 ~~ 263 (270)
T 1rwi_B 262 SL 263 (270)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.56 E-value=2e-12 Score=114.91 Aligned_cols=209 Identities=10% Similarity=0.068 Sum_probs=132.2
Q ss_pred eEEEEEcCCCCEEEeEeccCC-----------CCceEEEEEEcCCceee--e--ccccccccEEEEEEcCCCCEEEEEeC
Q 037555 59 LFSLCCDHQGKLVASSCKAQS-----------TAAAEIWLWEVGSWKAM--G--RLQSHSLTVTQIRFSHDDNLLLSVSR 123 (298)
Q Consensus 59 v~~~~~s~~~~~l~~~~~~~~-----------~~d~~i~vw~~~~~~~~--~--~~~~~~~~v~~~~~~~~~~~l~~~~~ 123 (298)
+..++|+|||+.|+.++.+.. .....|++|++.+++.. . ....|...+..+.|+|||++|+..+.
T Consensus 173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~ 252 (710)
T 2xdw_A 173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR 252 (710)
T ss_dssp SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE
Confidence 667999999999999876322 11345999999876532 2 22235566889999999998887765
Q ss_pred -----CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC----CeEEEEEccCCcc--eeeeee
Q 037555 124 -----DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD----KTVKIWAVENKSS--VKQILA 192 (298)
Q Consensus 124 -----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~wd~~~~~~--~~~~~~ 192 (298)
+..|.+||+...............+..+...+.. .|+|++..|+..+.. +.|.+||+.+... ...+
T Consensus 253 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l-- 329 (710)
T 2xdw_A 253 EGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVL-- 329 (710)
T ss_dssp CSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEE--
T ss_pred ccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceec--
Confidence 5689999987510000000023344445555544 488888888776653 3699999987642 2322
Q ss_pred cCCCC-CceEEEEEeeccccCCccEEEEeecCCcEEE--EEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEee
Q 037555 193 LPPFN-SSVTALSWVGLDRQKNHGFLAVGMESGVIEL--WSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWK 269 (298)
Q Consensus 193 ~~~~~-~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~v--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 269 (298)
+.... ..+..++|++.+ .++++...++..+| |++.++ .....+. .+...|..+.++
T Consensus 330 ~~~~~~~~~~~~~~~~~~-----~lv~~~~~~g~~~l~~~~~~~g-------------~~~~~l~---~~~~~v~~~~~s 388 (710)
T 2xdw_A 330 VPEHEKDVLEWVACVRSN-----FLVLCYLHDVKNTLQLHDLATG-------------ALLKIFP---LEVGSVVGYSGQ 388 (710)
T ss_dssp ECCCSSCEEEEEEEETTT-----EEEEEEEETTEEEEEEEETTTC-------------CEEEEEC---CCSSEEEEEECC
T ss_pred cCCCCCCeEEEEEEEcCC-----EEEEEEEECCEEEEEEEECCCC-------------CEEEecC---CCCceEEEEecC
Confidence 22222 367888998665 68888888886555 454333 3333332 356788899999
Q ss_pred cCCCCCCCcceEEEeee---CCCcEEEeEec
Q 037555 270 THEKPKNSRTMQLASCG---ADNTVRVFQVN 297 (298)
Q Consensus 270 ~~~~~~~~~~~~l~s~~---~d~~i~iw~~~ 297 (298)
|+++ .++++.+ ..+.|..||+.
T Consensus 389 ~d~~------~l~~~~ss~~~P~~i~~~d~~ 413 (710)
T 2xdw_A 389 KKDT------EIFYQFTSFLSPGIIYHCDLT 413 (710)
T ss_dssp TTCS------EEEEEEECSSCCCEEEEEETT
T ss_pred CCCC------EEEEEEeCCCCCCEEEEEECC
Confidence 9872 3433333 35678888863
No 186
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.55 E-value=2.1e-12 Score=115.26 Aligned_cols=207 Identities=14% Similarity=0.055 Sum_probs=132.9
Q ss_pred CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCe--------
Q 037555 55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQ-------- 126 (298)
Q Consensus 55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-------- 126 (298)
|...+..++|||||++||.+..+.+.+...|++||+.+++.+.. ..+...+..++|+|| +.|+.++.++.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 44468899999999999988654333336899999999887543 112223367899999 98888876654
Q ss_pred ------EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCC-----eEEEEEccCC--cceeeeeec
Q 037555 127 ------FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDK-----TVKIWAVENK--SSVKQILAL 193 (298)
Q Consensus 127 ------i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~~wd~~~~--~~~~~~~~~ 193 (298)
|++|++.+.... ...+.....+...+..+.|+|+|++|+..+.++ .|++||+.++ +... .+
T Consensus 239 ~~~~~~v~~~~lgt~~~~---~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~---~l 312 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSA---DQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT---AL 312 (741)
T ss_dssp CCCCCEEEEEETTSCGGG---CEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE---EE
T ss_pred CCCCCEEEEEECCCCchh---CEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE---Ee
Confidence 888887653210 122322223334588999999999888877543 7999999876 3123 22
Q ss_pred CCCCCceEEEEEeeccccCCccEEEEeec----CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEee
Q 037555 194 PPFNSSVTALSWVGLDRQKNHGFLAVGME----SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWK 269 (298)
Q Consensus 194 ~~~~~~v~~~~~~~~~~~~~~~~l~~g~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 269 (298)
..+...+.... .|++ ..|+..+. ++.|.+||+.+.. . .....+ ..+...+.++.|+
T Consensus 313 ~~~~~~~~~~~-~~dg-----~~l~~~s~~~~~~~~l~~~d~~~~~-~----------~~~~l~---~~~~~~l~~~~~~ 372 (741)
T 1yr2_A 313 IPDLKAQWDFV-DGVG-----DQLWFVSGDGAPLKKIVRVDLSGST-P----------RFDTVV---PESKDNLESVGIA 372 (741)
T ss_dssp ECSSSSCEEEE-EEET-----TEEEEEECTTCTTCEEEEEECSSSS-C----------EEEEEE---CCCSSEEEEEEEE
T ss_pred cCCCCceEEEE-eccC-----CEEEEEECCCCCCCEEEEEeCCCCc-c----------ccEEEe---cCCCCeEEEEEEE
Confidence 22333444443 4777 55665554 3458888876531 0 111121 2344567778887
Q ss_pred cCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 270 THEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 270 ~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
++ .++++...|+..+||.++
T Consensus 373 -~~-------~lv~~~~~dg~~~l~~~~ 392 (741)
T 1yr2_A 373 -GN-------RLFASYIHDAKSQVLAFD 392 (741)
T ss_dssp -BT-------EEEEEEEETTEEEEEEEE
T ss_pred -CC-------EEEEEEEECCEEEEEEEe
Confidence 44 688898999998888654
No 187
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.55 E-value=1.1e-12 Score=102.48 Aligned_cols=196 Identities=8% Similarity=-0.035 Sum_probs=131.5
Q ss_pred ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCC
Q 037555 58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGT 137 (298)
Q Consensus 58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 137 (298)
...+++++++|++++++. ..++.|.+|+..+.........+...+.+++++++++++++.. ++.|.+||.....
T Consensus 25 ~p~~i~~~~~g~l~v~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~- 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSE----GMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNN- 98 (270)
T ss_dssp CEEEEEECTTCCEEEEEC----SSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSC-
T ss_pred CccceEECCCCCEEEEcc----CCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCce-
Confidence 678999999999776232 2478899999865543322222335678899999998666665 8899999976421
Q ss_pred CccceeeeEEee-ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccE
Q 037555 138 GEIDYQLIARQE-AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGF 216 (298)
Q Consensus 138 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 216 (298)
...+. .....+..++++++++.+++...++.|.+|+..+..... ........+.++++++++ .+
T Consensus 99 -------~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~---~~~~~~~~p~~i~~~~~g-----~l 163 (270)
T 1rwi_B 99 -------QTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV---LPFTGLNDPDGVAVDNSG-----NV 163 (270)
T ss_dssp -------CEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE---CCCCSCCSCCCEEECTTC-----CE
T ss_pred -------EeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe---eccccCCCceeEEEeCCC-----CE
Confidence 11121 223567899999999877777778899999765543322 122223457889999987 66
Q ss_pred EEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 217 LAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 217 l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
+++...++.|.+|+..... .... ...+...+..|++++++ .++++...++.|.+|+.
T Consensus 164 ~v~~~~~~~i~~~~~~~~~-------------~~~~---~~~~~~~p~~i~~d~~g-------~l~v~~~~~~~v~~~~~ 220 (270)
T 1rwi_B 164 YVTDTDNNRVVKLEAESNN-------------QVVL---PFTDITAPWGIAVDEAG-------TVYVTEHNTNQVVKLLA 220 (270)
T ss_dssp EEEEGGGTEEEEECTTTCC-------------EEEC---CCSSCCSEEEEEECTTC-------CEEEEETTTSCEEEECT
T ss_pred EEEECCCCEEEEEecCCCc-------------eEee---cccCCCCceEEEECCCC-------CEEEEECCCCcEEEEcC
Confidence 7766677899999976541 1111 11223567899999998 78888777889999875
Q ss_pred c
Q 037555 297 N 297 (298)
Q Consensus 297 ~ 297 (298)
.
T Consensus 221 ~ 221 (270)
T 1rwi_B 221 G 221 (270)
T ss_dssp T
T ss_pred C
Confidence 3
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.55 E-value=9.6e-13 Score=103.12 Aligned_cols=184 Identities=7% Similarity=0.028 Sum_probs=134.4
Q ss_pred CCCEEEeEeccCCCCceEEEEEEcCCceeeecccccc-ccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeee
Q 037555 67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHS-LTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLI 145 (298)
Q Consensus 67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 145 (298)
.+++|+++ ..++.|.+||.++++.+..+..+. ..+.++.+.|+|++++ +.++.|..||. + .+.+
T Consensus 4 ~~~~lv~~-----~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~-------G~~~ 68 (276)
T 3no2_A 4 PQHLLVGG-----SGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D-------GREL 68 (276)
T ss_dssp CCEEEEEC-----TTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T-------SCEE
T ss_pred CCcEEEee-----CCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C-------CCEE
Confidence 45778887 458999999999999998887665 4788999999999888 45778999997 4 4455
Q ss_pred EEeecc-CCceEEEEEccCCCEEEEeeC-CCeEEEEEccCCcceeeeeecC---CCCCceEEEEEeeccccCCccEEEEe
Q 037555 146 ARQEAH-KRIIWSCSWNPFGHEFATGSR-DKTVKIWAVENKSSVKQILALP---PFNSSVTALSWVGLDRQKNHGFLAVG 220 (298)
Q Consensus 146 ~~~~~~-~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~l~~g 220 (298)
-.+..+ ...+.++.+.++++++++.+. ++.|..+|. +++.+..+..-. .+......+++.+++ .++++.
T Consensus 69 W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G-----~~lv~~ 142 (276)
T 3no2_A 69 WNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKG-----NYLVPL 142 (276)
T ss_dssp EEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTS-----CEEEEE
T ss_pred EEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCC-----CEEEEe
Confidence 555544 347888999999999999887 778888886 455554332111 111234556777777 799999
Q ss_pred ecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 221 MESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 221 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
..++.|..||.. + +.+..+.. ...+.++...+++ +++++++.+++|..+|.
T Consensus 143 ~~~~~v~~~d~~-G-------------~~~w~~~~----~~~~~~~~~~~~g-------~~~v~~~~~~~v~~~d~ 193 (276)
T 3no2_A 143 FATSEVREIAPN-G-------------QLLNSVKL----SGTPFSSAFLDNG-------DCLVACGDAHCFVQLNL 193 (276)
T ss_dssp TTTTEEEEECTT-S-------------CEEEEEEC----SSCCCEEEECTTS-------CEEEECBTTSEEEEECT
T ss_pred cCCCEEEEECCC-C-------------CEEEEEEC----CCCccceeEcCCC-------CEEEEeCCCCeEEEEeC
Confidence 999999999987 6 45454432 1344567778888 78888887888877764
No 189
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.55 E-value=1.9e-13 Score=110.20 Aligned_cols=195 Identities=11% Similarity=0.071 Sum_probs=132.5
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCC
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 136 (298)
..|.++.|++++..++..+ .++.++.| .++....+..+...+.+++|++++++++++..++.|.+||....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~- 76 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPII-----SESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK- 76 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCC-----CGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTC-
T ss_pred cccceeeecCCccceeEEe-----ecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCC-
Confidence 4577888888887776663 37778888 34455556666677899999999998888888999999998753
Q ss_pred CCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC----CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccC
Q 037555 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD----KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQK 212 (298)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 212 (298)
........+...+.+++++|+++++++...+ +.|.+||..+......+ ........+..++++|++
T Consensus 77 ------~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~-~~~~~~~~~~~i~~d~~g--- 146 (333)
T 2dg1_A 77 ------EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSKG--- 146 (333)
T ss_dssp ------CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTTS---
T ss_pred ------cEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEE-ccCccCCcccceEECCCC---
Confidence 2222222456779999999999888777666 68999999876653221 111234568999999988
Q ss_pred CccEEEEeec------CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcce-EEEee
Q 037555 213 NHGFLAVGME------SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTM-QLASC 285 (298)
Q Consensus 213 ~~~~l~~g~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~l~s~ 285 (298)
.++++... .+.|..++...+ .. ..+. .....+..++|+|++ . ++++.
T Consensus 147 --~l~v~~~~~~~~~~~~~l~~~~~~~~-------------~~-~~~~---~~~~~~~~i~~~~dg-------~~l~v~~ 200 (333)
T 2dg1_A 147 --GFYFTDFRGYSTNPLGGVYYVSPDFR-------------TV-TPII---QNISVANGIALSTDE-------KVLWVTE 200 (333)
T ss_dssp --CEEEEECCCBTTBCCEEEEEECTTSC-------------CE-EEEE---EEESSEEEEEECTTS-------SEEEEEE
T ss_pred --CEEEEeccccccCCCceEEEEeCCCC-------------EE-EEee---cCCCcccceEECCCC-------CEEEEEe
Confidence 56665543 234544443322 11 1111 123357889999998 5 44555
Q ss_pred eCCCcEEEeEe
Q 037555 286 GADNTVRVFQV 296 (298)
Q Consensus 286 ~~d~~i~iw~~ 296 (298)
+.++.|.+|++
T Consensus 201 ~~~~~i~~~d~ 211 (333)
T 2dg1_A 201 TTANRLHRIAL 211 (333)
T ss_dssp GGGTEEEEEEE
T ss_pred CCCCeEEEEEe
Confidence 66789999987
No 190
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.53 E-value=1.8e-12 Score=114.95 Aligned_cols=235 Identities=9% Similarity=-0.094 Sum_probs=145.3
Q ss_pred CCCCCceeeeccCCCccccc-----ccCCCCceEEe---------ccCCCce--EEEEEcCCCCEEEeEeccCC------
Q 037555 22 SVPDAVPAVFTEPPIEDQLA-----WHTLWPESHKL---------YGHGNEL--FSLCCDHQGKLVASSCKAQS------ 79 (298)
Q Consensus 22 ~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~---------~~h~~~v--~~~~~s~~~~~l~~~~~~~~------ 79 (298)
+|...+..+.++ |+++.++ .+..+..+..+ ..+...+ ..++|+|||+.|+.++.+..
T Consensus 118 ~~~~~~~~~~~S-PDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~ 196 (695)
T 2bkl_A 118 DGTVSLGTWAVS-WDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVD 196 (695)
T ss_dssp SSCEEEEEEEEC-TTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGG
T ss_pred CCCEEEEEEEEC-CCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccc
Confidence 455467788888 7777776 33322222221 1122223 68999999999999876321
Q ss_pred --CCceEEEEEEcCCce----eeeccccccccEEEEEEcCCCCEEEEEeCCC----eEEEEEeccCCCCccceeeeEEee
Q 037555 80 --TAAAEIWLWEVGSWK----AMGRLQSHSLTVTQIRFSHDDNLLLSVSRDR----QFSVFAIQRTGTGEIDYQLIARQE 149 (298)
Q Consensus 80 --~~d~~i~vw~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~~ 149 (298)
.....|++|++.+++ .+.....+...+..+.|+|||++|+..+.++ .|.+++... . ....+.
T Consensus 197 ~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~-------~-~~~~l~ 268 (695)
T 2bkl_A 197 ERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGE-------K-DFRLLV 268 (695)
T ss_dssp GGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTC-------S-SCEEEE
T ss_pred cCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCC-------C-ceEEee
Confidence 123459999998775 2333334556789999999999888877665 555554322 1 123334
Q ss_pred ccCCceEEEEEccCCCEEEEeeC----CCeEEEEEccCCcc--eeeeeecCCC-CCceEEEEEeeccccCCccEEEEeec
Q 037555 150 AHKRIIWSCSWNPFGHEFATGSR----DKTVKIWAVENKSS--VKQILALPPF-NSSVTALSWVGLDRQKNHGFLAVGME 222 (298)
Q Consensus 150 ~~~~~v~~~~~~~~~~~l~~~~~----dg~i~~wd~~~~~~--~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~l~~g~~ 222 (298)
.+...+....+ +++. |+..+. ++.|.+||+.++.. ... .+..+ ...+..++|+ .+ .++++...
T Consensus 269 ~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~--l~~~~~~~~l~~~~~~-~~-----~lv~~~~~ 338 (695)
T 2bkl_A 269 KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKE--IVPEDSSASLLSVSIV-GG-----HLSLEYLK 338 (695)
T ss_dssp ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEE--EECCCSSCEEEEEEEE-TT-----EEEEEEEE
T ss_pred cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeE--EecCCCCCeEEEEEEE-CC-----EEEEEEEE
Confidence 45555566666 5666 555443 57899999987653 121 22222 4567888887 44 68888889
Q ss_pred CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcc-cceEEEEEeecCCCCCCCcceEEE-ee---eCCCcEEEeEec
Q 037555 223 SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACH-VAAVNRMAWKTHEKPKNSRTMQLA-SC---GADNTVRVFQVN 297 (298)
Q Consensus 223 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~l~-s~---~~d~~i~iw~~~ 297 (298)
|+..+||.+.... .....+ ..+ ...|..+.++|++ ..|+ +. ...++|++||+.
T Consensus 339 dg~~~l~~~~~~g------------~~~~~l---~~~~~~~v~~~~~s~d~-------~~l~~~~ss~~~P~~v~~~d~~ 396 (695)
T 2bkl_A 339 DATSEVRVATLKG------------KPVRTV---QLPGVGAASNLMGLEDL-------DDAYYVFTSFTTPRQIYKTSVS 396 (695)
T ss_dssp TTEEEEEEEETTC------------CEEEEC---CCSSSSEECCCBSCTTC-------SEEEEEEEETTEEEEEEEEETT
T ss_pred CCEEEEEEEeCCC------------CeeEEe---cCCCCeEEEEeecCCCC-------CEEEEEEcCCCCCCEEEEEECC
Confidence 9999988776210 222222 223 5678888899987 4444 33 235778888863
No 191
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.52 E-value=5.3e-12 Score=98.91 Aligned_cols=192 Identities=9% Similarity=0.027 Sum_probs=135.8
Q ss_pred ceEEeccCC-CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccc-cccEEEEEEcCCCCEEEEEeC-C
Q 037555 48 ESHKLYGHG-NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSH-SLTVTQIRFSHDDNLLLSVSR-D 124 (298)
Q Consensus 48 ~~~~~~~h~-~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-d 124 (298)
.+.++..+. ..+.++.++|+|++|++. ++.|..||. +++.+..+..+ ...+.++.+.++|+++++.+. +
T Consensus 27 ~~w~~~~~~~~~~~~~~~~pdG~ilvs~-------~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~ 98 (276)
T 3no2_A 27 IVWEYPLEKGWECNSVAATKAGEILFSY-------SKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHP 98 (276)
T ss_dssp EEEEEECCTTCCCCEEEECTTSCEEEEC-------BSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTT
T ss_pred EEEEeCCCccCCCcCeEECCCCCEEEeC-------CCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCC
Confidence 344555554 468899999999999944 677999999 78888887754 357889999999999999887 7
Q ss_pred CeEEEEEeccCCCCccceeeeEEee------ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCC
Q 037555 125 RQFSVFAIQRTGTGEIDYQLIARQE------AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNS 198 (298)
Q Consensus 125 g~i~iwd~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~ 198 (298)
+.+..++.. .+.+..+. .+......+.+.++++++++...++.|..||.+ ++.+..+ .. ..
T Consensus 99 ~~v~~vd~~--------Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~---~~-~~ 165 (276)
T 3no2_A 99 STILEVNMK--------GEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSV---KL-SG 165 (276)
T ss_dssp EEEEEECTT--------SCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEE---EC-SS
T ss_pred CEEEEEeCC--------CCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEE---EC-CC
Confidence 777766642 22333222 122234566788999999999999999999998 7776633 21 23
Q ss_pred ceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccC--Cc-ccceEEEEEeecCCCCC
Q 037555 199 SVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPF--AC-HVAAVNRMAWKTHEKPK 275 (298)
Q Consensus 199 ~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~v~~~~~~~~~~~~ 275 (298)
.+.++...+++ .+++++..++.|..+|..++ +.+..+... .+ ....+..+...+++
T Consensus 166 ~~~~~~~~~~g-----~~~v~~~~~~~v~~~d~~tG-------------~~~w~~~~~~~~~~~l~~~~~~~~~~~G--- 224 (276)
T 3no2_A 166 TPFSSAFLDNG-----DCLVACGDAHCFVQLNLESN-------------RIVRRVNANDIEGVQLFFVAQLFPLQNG--- 224 (276)
T ss_dssp CCCEEEECTTS-----CEEEECBTTSEEEEECTTTC-------------CEEEEEEGGGSBSCCCSEEEEEEECTTS---
T ss_pred CccceeEcCCC-----CEEEEeCCCCeEEEEeCcCC-------------cEEEEecCCCCCCccccccccceEcCCC---
Confidence 45667777877 78888888888999998876 444444311 11 12346777888887
Q ss_pred CCcceEEEee
Q 037555 276 NSRTMQLASC 285 (298)
Q Consensus 276 ~~~~~~l~s~ 285 (298)
.++++.
T Consensus 225 ----~i~v~~ 230 (276)
T 3no2_A 225 ----GLYICN 230 (276)
T ss_dssp ----CEEEEE
T ss_pred ----CEEEEe
Confidence 666665
No 192
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.51 E-value=9e-12 Score=101.59 Aligned_cols=235 Identities=9% Similarity=0.029 Sum_probs=142.7
Q ss_pred ccceeeeecCcccccccCCCCCceeeeccCCCccccccc----------------CCC-----CceEEecc------CCC
Q 037555 5 TRETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWH----------------TLW-----PESHKLYG------HGN 57 (298)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------------~~~-----~~~~~~~~------h~~ 57 (298)
.+..++..+++.+..+..+..+ .++++ |+++.+... ..| ..+..+.. +..
T Consensus 32 ~v~v~D~~t~~~~~~i~~g~~p--~i~~s-pdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~ 108 (361)
T 2oiz_A 32 RVHVYDYTNGKFLGMVPTAFNG--HVQVS-NDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLN 108 (361)
T ss_dssp EEEEEETTTCCEEEEEECCEEE--EEEEC-TTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCC
T ss_pred eEEEEECCCCeEEEEecCCCCC--ceEEC-CCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCC
Confidence 3456666777777777665444 67777 444443322 122 12333322 123
Q ss_pred ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeec-cccccccEEEEEEcCCC-CEEEEEeCCCeEEEEEeccC
Q 037555 58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR-LQSHSLTVTQIRFSHDD-NLLLSVSRDRQFSVFAIQRT 135 (298)
Q Consensus 58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 135 (298)
....++|+|+|++|+++.. ..++.|.+||+.+++.+.. +... . ...+.+.|++ ..+++.+.||.+.+|+....
T Consensus 109 ~p~~i~~spdg~~l~v~n~---~~~~~v~v~d~~~~~~~~~~i~~~-~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~ 183 (361)
T 2oiz_A 109 YDGLFRQTTDGKFIVLQNA---SPATSIGIVDVAKGDYVEDVTAAA-G-CWSVIPQPNRPRSFMTICGDGGLLTINLGED 183 (361)
T ss_dssp CGGGEEECTTSSEEEEEEE---SSSEEEEEEETTTTEEEEEEGGGT-T-EEEEEECTTSSSEEEEEETTSSEEEEEECTT
T ss_pred CcceEEECCCCCEEEEECC---CCCCeEEEEECCCCcEEEEEecCC-C-cceeEEcCCCCeeEEEECCCCcEEEEEECCC
Confidence 4667899999999999864 2368999999999988777 5522 1 2224455544 45566666666666665431
Q ss_pred CCCc---------------c------c----------------------eeeeEEeec------c----CCceEEEEEcc
Q 037555 136 GTGE---------------I------D----------------------YQLIARQEA------H----KRIIWSCSWNP 162 (298)
Q Consensus 136 ~~~~---------------~------~----------------------~~~~~~~~~------~----~~~v~~~~~~~ 162 (298)
.... . . ......+.. + ......++|+|
T Consensus 184 g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~ 263 (361)
T 2oiz_A 184 GKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR 263 (361)
T ss_dssp SSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET
T ss_pred CcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec
Confidence 1100 0 0 000000000 0 00111268899
Q ss_pred CCCEEEEeeC-----------CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEe
Q 037555 163 FGHEFATGSR-----------DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSI 231 (298)
Q Consensus 163 ~~~~l~~~~~-----------dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~ 231 (298)
+++.++++.. .+.|.+||+.+.+.+. .+..+. +.+++|+|++ .+|++++. +.|.+||.
T Consensus 264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~---~i~~~~--p~~ia~spdg-----~~l~v~n~-~~v~v~D~ 332 (361)
T 2oiz_A 264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVA---RIPGRD--ALSMTIDQQR-----NLMLTLDG-GNVNVYDI 332 (361)
T ss_dssp TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEE---EEECTT--CCEEEEETTT-----TEEEEECS-SCEEEEEC
T ss_pred CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEE---EEecCC--eeEEEECCCC-----CEEEEeCC-CeEEEEEC
Confidence 8887776543 3589999999988777 444344 8999999999 68888776 99999998
Q ss_pred eecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555 232 SVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE 272 (298)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 272 (298)
.++.. +.+..+ ..+......++++|+|
T Consensus 333 ~t~~l-----------~~~~~i---~~~G~~P~~~~~~p~G 359 (361)
T 2oiz_A 333 SQPEP-----------KLLRTI---EGAAEASLQVQFHPVG 359 (361)
T ss_dssp SSSSC-----------EEEEEE---TTSCSSEEEEEECCCS
T ss_pred CCCcc-----------eeeEEe---ccCCCCcEEEEecCCC
Confidence 87511 222232 2356677889999987
No 193
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.48 E-value=1.6e-11 Score=98.74 Aligned_cols=205 Identities=7% Similarity=-0.007 Sum_probs=136.8
Q ss_pred ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccccc-----ccEEEEEEcCCCCEEEEEe
Q 037555 48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHS-----LTVTQIRFSHDDNLLLSVS 122 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~ 122 (298)
.+.++. .......++++++++.+++. ..++.|.+||..+++....+.... .....+++ ++..++++.
T Consensus 76 ~~~~i~-~~~~p~~i~~~~~g~lyv~~-----~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~ 147 (328)
T 3dsm_A 76 EVGRIT-GFTSPRYIHFLSDEKAYVTQ-----IWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNC 147 (328)
T ss_dssp EEEEEE-CCSSEEEEEEEETTEEEEEE-----BSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEE
T ss_pred EEEEcC-CCCCCcEEEEeCCCeEEEEE-----CCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEc
Confidence 345553 34678899999988544444 247899999999988776655322 14456777 344454444
Q ss_pred --CCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC----------CeEEEEEccCCcceeee
Q 037555 123 --RDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD----------KTVKIWAVENKSSVKQI 190 (298)
Q Consensus 123 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------g~i~~wd~~~~~~~~~~ 190 (298)
.++.|.++|+.+ ......+.. ......+.++|++++++++..+ +.|.++|..+.+....+
T Consensus 148 ~~~~~~v~viD~~t-------~~~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~ 219 (328)
T 3dsm_A 148 WSYQNRILKIDTET-------DKVVDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQF 219 (328)
T ss_dssp CTTCCEEEEEETTT-------TEEEEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEE
T ss_pred CCCCCEEEEEECCC-------CeEEEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEE
Confidence 489999999987 344444443 2345678899999877777654 78999999888765533
Q ss_pred eecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeec
Q 037555 191 LALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKT 270 (298)
Q Consensus 191 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 270 (298)
.+. ....+..++++|++ ..|.++.. .|.+||..+++... ..+ ..........++++|
T Consensus 220 -~~~-~g~~p~~la~~~d~-----~~lyv~~~--~v~~~d~~t~~~~~------------~~~--~~~~~~~p~gi~vdp 276 (328)
T 3dsm_A 220 -KFK-LGDWPSEVQLNGTR-----DTLYWINN--DIWRMPVEADRVPV------------RPF--LEFRDTKYYGLTVNP 276 (328)
T ss_dssp -ECC-TTCCCEEEEECTTS-----CEEEEESS--SEEEEETTCSSCCS------------SCS--BCCCSSCEEEEEECT
T ss_pred -ecC-CCCCceeEEEecCC-----CEEEEEcc--EEEEEECCCCceee------------eee--ecCCCCceEEEEEcC
Confidence 222 12467899999988 56766654 89999987653210 001 111245678999999
Q ss_pred CCCCCCCcceEEEee----eCCCcEEEeEec
Q 037555 271 HEKPKNSRTMQLASC----GADNTVRVFQVN 297 (298)
Q Consensus 271 ~~~~~~~~~~~l~s~----~~d~~i~iw~~~ 297 (298)
++. .++++. ..++.|.+||.+
T Consensus 277 ~~g------~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 277 NNG------EVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp TTC------CEEEEECTTSSSEEEEEEECTT
T ss_pred CCC------eEEEEcccccccCCEEEEECCC
Confidence 541 677776 678899999853
No 194
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.48 E-value=2e-11 Score=104.90 Aligned_cols=185 Identities=14% Similarity=0.058 Sum_probs=132.1
Q ss_pred CCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEE
Q 037555 80 TAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCS 159 (298)
Q Consensus 80 ~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 159 (298)
..++.|.++|..+++.+..+.. ...+..+.|+|||+++++++.|+.|.+||+.... .+.+..+... .....++
T Consensus 174 ~~~~~V~viD~~t~~v~~~i~~-g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t-----~~~v~~i~~G-~~P~~ia 246 (567)
T 1qks_A 174 RDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE-----PTTVAEIKIG-SEARSIE 246 (567)
T ss_dssp TTTTEEEEEETTTCCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSS-----CCEEEEEECC-SEEEEEE
T ss_pred CCCCeEEEEECCCCeEEEEEeC-CCCccceEECCCCCEEEEEcCCCeEEEEECCCCC-----CcEeEEEecC-CCCceeE
Confidence 4589999999999998887763 3356789999999999999999999999985111 3445555443 3457899
Q ss_pred Ec----cCCCEEEEeeC-CCeEEEEEccCCcceeeeeecC----C---C-CCceEEEEEeeccccCCccEEEEeecCCcE
Q 037555 160 WN----PFGHEFATGSR-DKTVKIWAVENKSSVKQILALP----P---F-NSSVTALSWVGLDRQKNHGFLAVGMESGVI 226 (298)
Q Consensus 160 ~~----~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~----~---~-~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i 226 (298)
|+ |++++++++.. ++.|.++|..+.+.+..+.... . | ...+..+..+++++ .+++....+|.|
T Consensus 247 ~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~----~~vv~~~~~g~v 322 (567)
T 1qks_A 247 TSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRP----EFIVNVKETGKI 322 (567)
T ss_dssp ECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSS----EEEEEETTTTEE
T ss_pred EccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCC----EEEEEecCCCeE
Confidence 99 69998887764 5899999999988776443211 0 1 12577888888764 677777778999
Q ss_pred EEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEE-EeeeCCCcEEEeEec
Q 037555 227 ELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQL-ASCGADNTVRVFQVN 297 (298)
Q Consensus 227 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~iw~~~ 297 (298)
.++|+..... ..+..+. .......+.|+|++ ++| +++..++.|.++|+.
T Consensus 323 ~~vd~~~~~~-----------~~v~~i~----~~~~~~d~~~~pdg-------r~~~va~~~sn~V~ViD~~ 372 (567)
T 1qks_A 323 LLVDYTDLNN-----------LKTTEIS----AERFLHDGGLDGSH-------RYFITAANARNKLVVIDTK 372 (567)
T ss_dssp EEEETTCSSE-----------EEEEEEE----CCSSEEEEEECTTS-------CEEEEEEGGGTEEEEEETT
T ss_pred EEEecCCCcc-----------ceeeeee----ccccccCceECCCC-------CEEEEEeCCCCeEEEEECC
Confidence 9999865421 1111221 23346678899999 555 555567899999864
No 195
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.47 E-value=1e-10 Score=92.40 Aligned_cols=200 Identities=10% Similarity=0.045 Sum_probs=138.6
Q ss_pred ccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeec-cccccccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 037555 53 YGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR-LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFA 131 (298)
Q Consensus 53 ~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 131 (298)
..+...+.+++++++|.++++. ..++.|.+||.. ++.... ...+...+.++++++++.++++...++.|..|+
T Consensus 11 ~~~~~~~~~i~~d~~g~l~v~~-----~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~ 84 (299)
T 2z2n_A 11 TNQDTGPYGITVSDKGKVWITQ-----HKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRIT 84 (299)
T ss_dssp CSSSCCEEEEEECTTSCEEEEE-----TTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred CCcCCCccceEECCCCCEEEEe-----cCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEEC
Confidence 3455789999999999988776 336889999987 543321 223456789999999999888877788999998
Q ss_pred eccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecccc
Q 037555 132 IQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQ 211 (298)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (298)
... . .. ..........+..+++.++++++++...++.|..||. +++... + ........+..+++.+++
T Consensus 85 ~~g-~-----~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~-~-~~~~~~~~~~~i~~~~~g-- 152 (299)
T 2z2n_A 85 KKG-I-----IK-EYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIRE-Y-ELPNKGSYPSFITLGSDN-- 152 (299)
T ss_dssp TTS-C-----EE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-E-ECSSTTCCEEEEEECTTS--
T ss_pred CCC-c-----EE-EEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEE-e-cCCCCCCCCceEEEcCCC--
Confidence 652 1 11 1112223456889999999988887777889999998 443322 1 223344568899999887
Q ss_pred CCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcE
Q 037555 212 KNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTV 291 (298)
Q Consensus 212 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i 291 (298)
.++++...++.|..||. ++ ... .+. .......+..+++++++ .++++...++.|
T Consensus 153 ---~l~v~~~~~~~i~~~~~-~g-------------~~~-~~~-~~~~~~~~~~i~~~~~g-------~l~v~~~~~~~i 206 (299)
T 2z2n_A 153 ---ALWFTENQNNAIGRITE-SG-------------DIT-EFK-IPTPASGPVGITKGNDD-------ALWFVEIIGNKI 206 (299)
T ss_dssp ---CEEEEETTTTEEEEECT-TC-------------CEE-EEE-CSSTTCCEEEEEECTTS-------SEEEEETTTTEE
T ss_pred ---CEEEEeCCCCEEEEEcC-CC-------------cEE-Eee-CCCCCCcceeEEECCCC-------CEEEEccCCceE
Confidence 56666666788999987 43 111 111 12234567889999988 677766667788
Q ss_pred EEeEe
Q 037555 292 RVFQV 296 (298)
Q Consensus 292 ~iw~~ 296 (298)
.+|+.
T Consensus 207 ~~~~~ 211 (299)
T 2z2n_A 207 GRITT 211 (299)
T ss_dssp EEECT
T ss_pred EEECC
Confidence 88764
No 196
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.44 E-value=1.7e-10 Score=91.40 Aligned_cols=193 Identities=8% Similarity=0.047 Sum_probs=125.8
Q ss_pred CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc----ccccEEEEEEcCCCCEEEEEeCC------
Q 037555 55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS----HSLTVTQIRFSHDDNLLLSVSRD------ 124 (298)
Q Consensus 55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~d------ 124 (298)
....+.+++++++|+++++. +..|.+||.++++....... ....+..++++|+|+++++....
T Consensus 52 ~~~~~~~i~~~~dG~l~v~~-------~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~ 124 (297)
T 3g4e_A 52 MDAPVSSVALRQSGGYVATI-------GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAV 124 (297)
T ss_dssp CSSCEEEEEEBTTSSEEEEE-------TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTB
T ss_pred CCCceEEEEECCCCCEEEEE-------CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCccccccc
Confidence 45679999999999966654 45799999987764322211 23458899999999977755322
Q ss_pred ---CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEe-eCCCeEEEEEcc--CCcce--eeeeecCCC
Q 037555 125 ---RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATG-SRDKTVKIWAVE--NKSSV--KQILALPPF 196 (298)
Q Consensus 125 ---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~--~~~~~--~~~~~~~~~ 196 (298)
..-.+|.+.... .. ..+.........++|+|+++.|+.+ +.++.|.+||+. ++... ..+..+...
T Consensus 125 ~~~~~~~l~~~d~~g------~~-~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~ 197 (297)
T 3g4e_A 125 LERHQGALYSLFPDH------HV-KKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKE 197 (297)
T ss_dssp CCTTCEEEEEECTTS------CE-EEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGG
T ss_pred ccCCCcEEEEEECCC------CE-EEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCC
Confidence 334566665421 11 1122233456889999999876554 557899999973 44321 122233334
Q ss_pred CCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEee-cCCCCC
Q 037555 197 NSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWK-THEKPK 275 (298)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~ 275 (298)
...+..+++.+++ .+.++....+.|..||..++ +.+..+. .+...+++++|. |+++
T Consensus 198 ~~~p~g~~~d~~G-----~lwva~~~~~~v~~~d~~tG-------------~~~~~i~---~p~~~~t~~~f~g~d~~-- 254 (297)
T 3g4e_A 198 EQIPDGMCIDAEG-----KLWVACYNGGRVIRLDPVTG-------------KRLQTVK---LPVDKTTSCCFGGKNYS-- 254 (297)
T ss_dssp GCEEEEEEEBTTS-----CEEEEEETTTEEEEECTTTC-------------CEEEEEE---CSSSBEEEEEEESGGGC--
T ss_pred CCCCCeeEECCCC-----CEEEEEcCCCEEEEEcCCCc-------------eEEEEEE---CCCCCceEEEEeCCCCC--
Confidence 4567889999988 67777777788999998766 4444443 245678999998 7762
Q ss_pred CCcceEEEeeeCC
Q 037555 276 NSRTMQLASCGAD 288 (298)
Q Consensus 276 ~~~~~~l~s~~~d 288 (298)
.++++...+
T Consensus 255 ----~L~vt~~~~ 263 (297)
T 3g4e_A 255 ----EMYVTCARD 263 (297)
T ss_dssp ----EEEEEEBCT
T ss_pred ----EEEEEcCCc
Confidence 455555443
No 197
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.44 E-value=2.4e-10 Score=90.33 Aligned_cols=198 Identities=9% Similarity=-0.018 Sum_probs=137.0
Q ss_pred CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceee-eccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555 55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAM-GRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQ 133 (298)
Q Consensus 55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 133 (298)
+...+.+++++++|.++++. ..++.|..|+.. ++.. ..+......+..+++.++++++++...++.|..||.
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~-----~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~- 127 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTE-----NAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD- 127 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEE-----TTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-
T ss_pred ccCceeeEEECCCCCEEEeC-----CCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-
Confidence 45679999999999988876 346789999976 3321 112224457899999999988888777889999987
Q ss_pred cCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCC
Q 037555 134 RTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKN 213 (298)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (298)
... .. ..........+..+++.++++.+++...++.|..||. +++... + ........+.++++.+++
T Consensus 128 ~g~-----~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~-~~~~~~~~~~~i~~~~~g---- 194 (299)
T 2z2n_A 128 DGK-----IR-EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE-F-KIPTPASGPVGITKGNDD---- 194 (299)
T ss_dssp TCC-----EE-EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-E-ECSSTTCCEEEEEECTTS----
T ss_pred CCC-----EE-EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE-e-eCCCCCCcceeEEECCCC----
Confidence 321 11 1112223456889999999988777777789999998 544332 1 233344568899999987
Q ss_pred ccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEE
Q 037555 214 HGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRV 293 (298)
Q Consensus 214 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 293 (298)
.+.++...++.|.+|+. ++ .. ..+. ...+...+.++++++++ .++++...++.|..
T Consensus 195 -~l~v~~~~~~~i~~~~~-~g-------------~~-~~~~-~~~~~~~~~~i~~~~~g-------~l~v~~~~~~~i~~ 250 (299)
T 2z2n_A 195 -ALWFVEIIGNKIGRITT-SG-------------EI-TEFK-IPTPNARPHAITAGAGI-------DLWFTEWGANKIGR 250 (299)
T ss_dssp -SEEEEETTTTEEEEECT-TC-------------CE-EEEE-CSSTTCCEEEEEECSTT-------CEEEEETTTTEEEE
T ss_pred -CEEEEccCCceEEEECC-CC-------------cE-EEEE-CCCCCCCceeEEECCCC-------CEEEeccCCceEEE
Confidence 66666656788999987 43 21 1121 22345678899999998 77776656788888
Q ss_pred eEe
Q 037555 294 FQV 296 (298)
Q Consensus 294 w~~ 296 (298)
||.
T Consensus 251 ~d~ 253 (299)
T 2z2n_A 251 LTS 253 (299)
T ss_dssp EET
T ss_pred ECC
Confidence 874
No 198
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.42 E-value=5.3e-11 Score=95.77 Aligned_cols=192 Identities=11% Similarity=0.082 Sum_probs=128.3
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCC
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 136 (298)
.....+.+. +++++++. ..++.|.+||..+++.+.++. .......++++++++++++...++.|.+||..+
T Consensus 44 ~~~~~i~~~-~~~lyv~~-----~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t-- 114 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVV-----NNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKT-- 114 (328)
T ss_dssp SCEEEEEEE-TTEEEEEE-----GGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTT--
T ss_pred ccceEEEEE-CCEEEEEE-----cCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCC--
Confidence 345677774 34444444 247899999999999888775 345678999998885555544899999999886
Q ss_pred CCccceeeeEEeeccC-----CceEEEEEccCCCEEEEee--CCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecc
Q 037555 137 TGEIDYQLIARQEAHK-----RIIWSCSWNPFGHEFATGS--RDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLD 209 (298)
Q Consensus 137 ~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (298)
......+.... .....+++ . +..++++. .++.|.++|..+.+....+ . .......++++|++
T Consensus 115 -----~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i---~-~g~~p~~i~~~~dG 183 (328)
T 3dsm_A 115 -----YEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDEL---T-IGIQPTSLVMDKYN 183 (328)
T ss_dssp -----TEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEE---E-CSSCBCCCEECTTS
T ss_pred -----CeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEE---E-cCCCccceEEcCCC
Confidence 34444443222 14456777 3 44555554 4889999999988776633 2 12345688999988
Q ss_pred ccCCccEEEEeecC----------CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcc
Q 037555 210 RQKNHGFLAVGMES----------GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRT 279 (298)
Q Consensus 210 ~~~~~~~l~~g~~d----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 279 (298)
.+++++..+ +.|.++|..+. +....+. .. .......++|+|++
T Consensus 184 -----~l~v~~~~~~~~~~~~~~~~~v~~id~~t~-------------~v~~~~~-~~-~g~~p~~la~~~d~------- 236 (328)
T 3dsm_A 184 -----KMWTITDGGYEGSPYGYEAPSLYRIDAETF-------------TVEKQFK-FK-LGDWPSEVQLNGTR------- 236 (328)
T ss_dssp -----EEEEEBCCBCTTCSSCBCCCEEEEEETTTT-------------EEEEEEE-CC-TTCCCEEEEECTTS-------
T ss_pred -----CEEEEECCCccCCccccCCceEEEEECCCC-------------eEEEEEe-cC-CCCCceeEEEecCC-------
Confidence 666666554 78999998765 3333332 11 12367899999988
Q ss_pred eEEEeeeCCCcEEEeEec
Q 037555 280 MQLASCGADNTVRVFQVN 297 (298)
Q Consensus 280 ~~l~s~~~d~~i~iw~~~ 297 (298)
..|..+.. .|.+||+.
T Consensus 237 ~~lyv~~~--~v~~~d~~ 252 (328)
T 3dsm_A 237 DTLYWINN--DIWRMPVE 252 (328)
T ss_dssp CEEEEESS--SEEEEETT
T ss_pred CEEEEEcc--EEEEEECC
Confidence 56665544 78888753
No 199
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.41 E-value=1.3e-10 Score=92.67 Aligned_cols=199 Identities=11% Similarity=0.121 Sum_probs=130.4
Q ss_pred CCCceEEEEEcCC-CCEEEeEeccCCCCceEEEEEEcCCceeeec-ccc----ccccEEEEEEcCCCCEEEEEeCC----
Q 037555 55 HGNELFSLCCDHQ-GKLVASSCKAQSTAAAEIWLWEVGSWKAMGR-LQS----HSLTVTQIRFSHDDNLLLSVSRD---- 124 (298)
Q Consensus 55 h~~~v~~~~~s~~-~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~d---- 124 (298)
+...+.+++++++ ++++++.. ...|.+||.+ ++.... ... ....+.+++++++|+++++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~~------~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~ 141 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVADM------RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAP 141 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEET------TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTT
T ss_pred CCCCCceEEEecCCCcEEEEEC------CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCccccc
Confidence 4567899999999 77666552 3368899988 665433 221 12457899999999888777655
Q ss_pred -----------CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEc----cCCCEEEEe-eCCCeEEEEEcc-CCcc-
Q 037555 125 -----------RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN----PFGHEFATG-SRDKTVKIWAVE-NKSS- 186 (298)
Q Consensus 125 -----------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~-~~dg~i~~wd~~-~~~~- 186 (298)
+.|..++.. .. . ..+..+......++|+ |+++.++.+ ..++.|.+||.+ +++.
T Consensus 142 ~~~~~~~~~~~~~l~~~~~~-g~-----~---~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~ 212 (314)
T 1pjx_A 142 ADYTRSMQEKFGSIYCFTTD-GQ-----M---IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIE 212 (314)
T ss_dssp SCCCBTTSSSCEEEEEECTT-SC-----E---EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEE
T ss_pred ccccccccCCCCeEEEECCC-CC-----E---EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccc
Confidence 455555543 11 1 1112233446789999 998766555 567899999986 3321
Q ss_pred -eeeeeecCCCC-CceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEE
Q 037555 187 -VKQILALPPFN-SSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVN 264 (298)
Q Consensus 187 -~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 264 (298)
...+..+..+. ..+..+++++++ .++++...++.|.+||..++ +....+. .+...+.
T Consensus 213 ~~~~~~~~~~~~~~~p~~i~~d~~G-----~l~v~~~~~~~i~~~d~~~g-------------~~~~~~~---~~~~~~~ 271 (314)
T 1pjx_A 213 NKKVWGHIPGTHEGGADGMDFDEDN-----NLLVANWGSSHIEVFGPDGG-------------QPKMRIR---CPFEKPS 271 (314)
T ss_dssp EEEEEEECCCCSSCEEEEEEEBTTC-----CEEEEEETTTEEEEECTTCB-------------SCSEEEE---CSSSCEE
T ss_pred cceEEEECCCCCCCCCCceEECCCC-----CEEEEEcCCCEEEEEcCCCC-------------cEeEEEe---CCCCCce
Confidence 11222333333 567889999988 67777767889999998754 2222222 2446789
Q ss_pred EEEeecCCCCCCCcce-EEEeeeCCCcEEEeEec
Q 037555 265 RMAWKTHEKPKNSRTM-QLASCGADNTVRVFQVN 297 (298)
Q Consensus 265 ~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iw~~~ 297 (298)
+++|+|++ . ++++...++.|..|++.
T Consensus 272 ~i~~~~dg-------~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 272 NLHFKPQT-------KTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEECTTS-------SEEEEEETTTTEEEEEECS
T ss_pred eEEECCCC-------CEEEEEeCCCCeEEEEeCC
Confidence 99999998 6 55566667889888864
No 200
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.40 E-value=2.2e-10 Score=91.37 Aligned_cols=208 Identities=10% Similarity=0.072 Sum_probs=132.4
Q ss_pred EEeccCCCceEEEEEcCCCCEEEe-------EeccCCCCceEEEEEEcCCceeeeccc----cccccEEEEEEcCC-CCE
Q 037555 50 HKLYGHGNELFSLCCDHQGKLVAS-------SCKAQSTAAAEIWLWEVGSWKAMGRLQ----SHSLTVTQIRFSHD-DNL 117 (298)
Q Consensus 50 ~~~~~h~~~v~~~~~s~~~~~l~~-------~~~~~~~~d~~i~vw~~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~ 117 (298)
..+...-....+++|++++.++++ .. .++.|.+|+..+++...... ++...+.+++++++ +++
T Consensus 11 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~-----~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l 85 (314)
T 1pjx_A 11 TKVTEDIPGAEGPVFDKNGDFYIVAPEVEVNGK-----PAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQL 85 (314)
T ss_dssp EEEECCCTTCEEEEECTTSCEEEEETTCEETTE-----ECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEE
T ss_pred hhhhccCCCccCceECCCCCEEEEEeccccCCC-----CCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcE
Confidence 334444556789999999988877 32 37889999987776532211 24567899999999 665
Q ss_pred EEEEeCCCeEEEEEeccCCCCccceeee-EEe--eccCCceEEEEEccCCCEEEEeeCC---------------CeEEEE
Q 037555 118 LLSVSRDRQFSVFAIQRTGTGEIDYQLI-ARQ--EAHKRIIWSCSWNPFGHEFATGSRD---------------KTVKIW 179 (298)
Q Consensus 118 l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~--~~~~~~v~~~~~~~~~~~l~~~~~d---------------g~i~~w 179 (298)
+++.. .+.|.+||.. .. .... ... ......+..++++++++++++...+ +.|..+
T Consensus 86 ~v~~~-~~~l~~~d~~-g~-----~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (314)
T 1pjx_A 86 FVADM-RLGLLVVQTD-GT-----FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCF 158 (314)
T ss_dssp EEEET-TTEEEEEETT-SC-----EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEE
T ss_pred EEEEC-CCCEEEEeCC-CC-----EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEE
Confidence 55444 4478888876 32 1111 110 0112357899999999887776554 567777
Q ss_pred EccCCcceeeeeecCCCCCceEEEEEe----eccccCCccEEE-EeecCCcEEEEEeee-cccccccCCCCCCcceeeee
Q 037555 180 AVENKSSVKQILALPPFNSSVTALSWV----GLDRQKNHGFLA-VGMESGVIELWSISV-NRTNDVSTPAPSTANIIIRF 253 (298)
Q Consensus 180 d~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~~l~-~g~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~ 253 (298)
|.. ++... +.........++++ |++ ..++ +...++.|.+|+... +.. .....+
T Consensus 159 ~~~-g~~~~----~~~~~~~~~~i~~~~~~d~dg-----~~l~v~~~~~~~i~~~~~~~~g~~-----------~~~~~~ 217 (314)
T 1pjx_A 159 TTD-GQMIQ----VDTAFQFPNGIAVRHMNDGRP-----YQLIVAETPTKKLWSYDIKGPAKI-----------ENKKVW 217 (314)
T ss_dssp CTT-SCEEE----EEEEESSEEEEEEEECTTSCE-----EEEEEEETTTTEEEEEEEEETTEE-----------EEEEEE
T ss_pred CCC-CCEEE----eccCCCCcceEEEecccCCCC-----CEEEEEECCCCeEEEEECCCCCcc-----------ccceEE
Confidence 765 33222 11123446789999 887 4554 445678999999863 210 111122
Q ss_pred ccCCccc-ceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 254 DPFACHV-AAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 254 ~~~~~~~-~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
..+..+. ..+..+++++++ .++++...++.|.+||.+
T Consensus 218 ~~~~~~~~~~p~~i~~d~~G-------~l~v~~~~~~~i~~~d~~ 255 (314)
T 1pjx_A 218 GHIPGTHEGGADGMDFDEDN-------NLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp EECCCCSSCEEEEEEEBTTC-------CEEEEEETTTEEEEECTT
T ss_pred EECCCCCCCCCCceEECCCC-------CEEEEEcCCCEEEEEcCC
Confidence 2233343 567889999998 788887778889999753
No 201
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.40 E-value=4.5e-11 Score=105.83 Aligned_cols=207 Identities=10% Similarity=0.018 Sum_probs=128.4
Q ss_pred cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCC--------
Q 037555 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDR-------- 125 (298)
Q Consensus 54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------- 125 (298)
+|...+..++|||||++||.+....+.+...|++||+.+++.+.. ..+......++|+ |++.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~ 203 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA 203 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence 456678899999999999976543334457999999999886543 1111113578999 999998888774
Q ss_pred -----eEEEEEeccCCCCccceeeeEEeec-cCCceEEEEEccCCCEEEEeeC----CCeEEEEEccCCc-ceeeeeecC
Q 037555 126 -----QFSVFAIQRTGTGEIDYQLIARQEA-HKRIIWSCSWNPFGHEFATGSR----DKTVKIWAVENKS-SVKQILALP 194 (298)
Q Consensus 126 -----~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~----dg~i~~wd~~~~~-~~~~~~~~~ 194 (298)
.|++|++.+.... ...+..... +...+..+.|+|++++|+.... +..|+++|+.++. ... .+.
T Consensus 204 ~~~~~~v~~~~lgt~~~~---~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~---~l~ 277 (693)
T 3iuj_A 204 RTDQHKVYFHRLGTAQED---DRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLL---TVQ 277 (693)
T ss_dssp -CCCCEEEEEETTSCGGG---CEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCE---EEE
T ss_pred cCCCcEEEEEECCCCccc---ceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceE---EEe
Confidence 3888988764311 123333333 4555788999999998865442 3589999998764 233 222
Q ss_pred CCCCceEEEEEeeccccCCccEEEEeecC---CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecC
Q 037555 195 PFNSSVTALSWVGLDRQKNHGFLAVGMES---GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTH 271 (298)
Q Consensus 195 ~~~~~v~~~~~~~~~~~~~~~~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 271 (298)
.+....... +++++. .+++....+ +.|..+++.+... .....+. .|...+. .|+++
T Consensus 278 ~~~~~~~~~-~~~~g~----~l~~~t~~~~~~~~l~~~d~~~~~~-----------~~~~~l~---~~~~~~~--~~s~~ 336 (693)
T 3iuj_A 278 GDLDADVSL-VDNKGS----TLYLLTNRDAPNRRLVTVDAANPGP-----------AHWRDLI---PERQQVL--TVHSG 336 (693)
T ss_dssp CSSSSCEEE-EEEETT----EEEEEECTTCTTCEEEEEETTSCCG-----------GGCEEEE---CCCSSCE--EEEEE
T ss_pred CCCCceEEE-EeccCC----EEEEEECCCCCCCEEEEEeCCCCCc-----------cccEEEe---cCCCCEE--EEEEE
Confidence 344444444 566552 455555443 5788888775421 1112222 2333443 78888
Q ss_pred CCCCCCcceEEEeee-CCC--cEEEeEe
Q 037555 272 EKPKNSRTMQLASCG-ADN--TVRVFQV 296 (298)
Q Consensus 272 ~~~~~~~~~~l~s~~-~d~--~i~iw~~ 296 (298)
+ ..|+... .++ .|++|++
T Consensus 337 g-------~~lv~~~~~~g~~~l~~~d~ 357 (693)
T 3iuj_A 337 S-------GYLFAEYMVDATARVEQFDY 357 (693)
T ss_dssp T-------TEEEEEEEETTEEEEEEECT
T ss_pred C-------CEEEEEEEECCeeEEEEEEC
Confidence 8 5555444 454 5667764
No 202
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.39 E-value=1.8e-10 Score=95.42 Aligned_cols=213 Identities=10% Similarity=0.011 Sum_probs=132.1
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCC--eEEEEEecc
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDR--QFSVFAIQR 134 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~ 134 (298)
.....++|+++++++++. ..++.|++||..+++.......... .. ++|+++++.|+++..++ .|.+++...
T Consensus 131 ~~P~~la~d~~g~lyv~d-----~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~ 203 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQ-----RDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKAS 203 (409)
T ss_dssp CCEEEEEECSTTEEEEEE-----TTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGG
T ss_pred CCceEEEEeCCCCEEEEe-----cCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCC
Confidence 468899999999977766 3478999999987766544443222 33 99999999998888766 788888764
Q ss_pred CCCCccceeeeEEeec-cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeee--cCCCCCce-E-EEEEeecc
Q 037555 135 TGTGEIDYQLIARQEA-HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILA--LPPFNSSV-T-ALSWVGLD 209 (298)
Q Consensus 135 ~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--~~~~~~~v-~-~~~~~~~~ 209 (298)
... ......+.. ....+.+++++|++..|+++..++.|+.||..+..... +.. ..+..... . .++|+|++
T Consensus 204 ~~~----~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~-~~~~~~~g~~~~~P~~~ia~~p~~ 278 (409)
T 3hrp_A 204 GWA----PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTL-IKQLELSGSLGTNPGPYLIYYFVD 278 (409)
T ss_dssp TTC----EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEE-EEECCCCSCCCCSSCCEEEEETTT
T ss_pred Cce----eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEE-EecccccCCCCCCccccEEEeCCC
Confidence 321 111111112 34567889999965566667778899999998765322 111 11111222 3 89999954
Q ss_pred ccCCccEEEEeecCCcEEEEEeeecccccccCC-CCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeee-C
Q 037555 210 RQKNHGFLAVGMESGVIELWSISVNRTNDVSTP-APSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCG-A 287 (298)
Q Consensus 210 ~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~-~ 287 (298)
. .++++-...+.|+.|+.........-.. ......- .. ....-.....|++++++ .++++-. .
T Consensus 279 g----~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg---~~-~~~~~~~P~gia~d~dG-------~lyvad~~~ 343 (409)
T 3hrp_A 279 S----NFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDG---LR-EEALFAQPNGMTVDEDG-------NFYIVDGFK 343 (409)
T ss_dssp T----EEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCE---EG-GGCBCSSEEEEEECTTC-------CEEEEETTT
T ss_pred C----EEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCC---cc-cccEeCCCeEEEEeCCC-------CEEEEeCCC
Confidence 1 5666666778899998653210000000 0000000 00 00112347899999999 7778877 7
Q ss_pred CCcEEEeEe
Q 037555 288 DNTVRVFQV 296 (298)
Q Consensus 288 d~~i~iw~~ 296 (298)
++.|+.|++
T Consensus 344 ~~~I~~~~~ 352 (409)
T 3hrp_A 344 GYCLRKLDI 352 (409)
T ss_dssp TCEEEEEET
T ss_pred CCEEEEEEC
Confidence 889999983
No 203
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.38 E-value=3.1e-11 Score=98.15 Aligned_cols=137 Identities=15% Similarity=0.163 Sum_probs=105.3
Q ss_pred cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQ 133 (298)
Q Consensus 54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 133 (298)
.+.. |+.++| ++..|+++ . ++.|++||+.+.........|...+.++.+.+.. +++++.||.|.+||+.
T Consensus 86 ~lp~-V~~l~f--d~~~L~v~-~-----~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~ 154 (388)
T 1xip_A 86 EIPD-VIFVCF--HGDQVLVS-T-----RNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLR 154 (388)
T ss_dssp ECTT-EEEEEE--ETTEEEEE-E-----SSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETT
T ss_pred eCCC-eeEEEE--CCCEEEEE-c-----CCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEcc
Confidence 4666 999999 89999998 3 6899999998766555566677788888887653 8889999999999998
Q ss_pred cCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcc--eeeeee---cC---CCCCceEEEEE
Q 037555 134 RTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSS--VKQILA---LP---PFNSSVTALSW 205 (298)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~--~~~~~~---~~---~~~~~v~~~~~ 205 (298)
... ... +...|.+++|+|+| ++.|..||++++|+...... ...+.. +. ++...|.++.|
T Consensus 155 ~~~-------~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~w 221 (388)
T 1xip_A 155 TKS-------TKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTI 221 (388)
T ss_dssp TCC-------EEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEE
T ss_pred CCc-------ccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEE
Confidence 632 221 34579999999999 78899999999998887663 332200 01 36788999999
Q ss_pred eeccccCCccEEEE
Q 037555 206 VGLDRQKNHGFLAV 219 (298)
Q Consensus 206 ~~~~~~~~~~~l~~ 219 (298)
.+++ .++++
T Consensus 222 l~~~-----~flv~ 230 (388)
T 1xip_A 222 LSPQ-----DFLAV 230 (388)
T ss_dssp SSSS-----EEEEE
T ss_pred ecCC-----eEEEE
Confidence 9987 56665
No 204
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.35 E-value=6.6e-10 Score=99.23 Aligned_cols=203 Identities=10% Similarity=0.103 Sum_probs=128.0
Q ss_pred EEEEEcCCCCEEEeEeccCCC---------CceEEEEEEcCCcee----eeccccccccEEEEEEcCCCCEEEEEeCCC-
Q 037555 60 FSLCCDHQGKLVASSCKAQST---------AAAEIWLWEVGSWKA----MGRLQSHSLTVTQIRFSHDDNLLLSVSRDR- 125 (298)
Q Consensus 60 ~~~~~s~~~~~l~~~~~~~~~---------~d~~i~vw~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg- 125 (298)
..++|+|| +.|+.++.+... ....|++|++.++.. +.....+...+..+.|+|||++|+..+.++
T Consensus 212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 290 (741)
T 1yr2_A 212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGT 290 (741)
T ss_dssp CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTT
T ss_pred ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccC
Confidence 57889999 988888653211 134699999977652 222223334588999999999888777544
Q ss_pred ----eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC----CeEEEEEccCCc-ceeeeeecCCC
Q 037555 126 ----QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD----KTVKIWAVENKS-SVKQILALPPF 196 (298)
Q Consensus 126 ----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~~wd~~~~~-~~~~~~~~~~~ 196 (298)
.|++||+..+. ......+..+...+.... .|+++.|+..+.+ +.|.+||+.+.. .... .+..+
T Consensus 291 ~~~~~l~~~d~~~~~-----~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~--l~~~~ 362 (741)
T 1yr2_A 291 DPVNTVHVARVTNGK-----IGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDT--VVPES 362 (741)
T ss_dssp CSCCEEEEEEEETTE-----ECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEE--EECCC
T ss_pred CCcceEEEEECCCCC-----CcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEE--EecCC
Confidence 89999987631 110233444444444443 4888888887753 459999998752 2232 22334
Q ss_pred CCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCC
Q 037555 197 NSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKN 276 (298)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 276 (298)
...+..+++. .+ .++++...|+..+||.+.... .....+. + .+...|..+.++|+++
T Consensus 363 ~~~l~~~~~~-~~-----~lv~~~~~dg~~~l~~~~~~g------------~~~~~l~-~-~~~~~v~~~~~s~d~~--- 419 (741)
T 1yr2_A 363 KDNLESVGIA-GN-----RLFASYIHDAKSQVLAFDLDG------------KPAGAVS-L-PGIGSASGLSGRPGDR--- 419 (741)
T ss_dssp SSEEEEEEEE-BT-----EEEEEEEETTEEEEEEEETTS------------CEEEECB-C-SSSCEEEEEECCBTCS---
T ss_pred CCeEEEEEEE-CC-----EEEEEEEECCEEEEEEEeCCC------------Cceeecc-C-CCCeEEEEeecCCCCC---
Confidence 4556677776 33 678888889988888765210 2223322 1 1356788999999872
Q ss_pred CcceEEEeee---CCCcEEEeEec
Q 037555 277 SRTMQLASCG---ADNTVRVFQVN 297 (298)
Q Consensus 277 ~~~~~l~s~~---~d~~i~iw~~~ 297 (298)
.++++.+ ..++|++||+.
T Consensus 420 ---~l~~~~ss~~~P~~i~~~d~~ 440 (741)
T 1yr2_A 420 ---HAYLSFSSFTQPATVLALDPA 440 (741)
T ss_dssp ---CEEEEEEETTEEEEEEEEETT
T ss_pred ---EEEEEEcCCCCCCEEEEEECC
Confidence 3333332 35788888863
No 205
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.35 E-value=2.7e-09 Score=91.67 Aligned_cols=208 Identities=9% Similarity=0.066 Sum_probs=137.3
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcC--CceeeeccccccccEEEEEEc----CCCCEEEEEe
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVG--SWKAMGRLQSHSLTVTQIRFS----HDDNLLLSVS 122 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~--~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~ 122 (298)
+.++. ....+..+.|+|+|+++++++ .++.|.+||+. +++.+..+.... ....++|+ |||++++++.
T Consensus 190 ~~~i~-~g~~p~~v~~SpDGr~lyv~~-----~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n 262 (567)
T 1qks_A 190 KTVLD-TGYAVHISRLSASGRYLFVIG-----RDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGA 262 (567)
T ss_dssp EEEEE-CSSCEEEEEECTTSCEEEEEE-----TTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEE
T ss_pred EEEEe-CCCCccceEECCCCCEEEEEc-----CCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEE
Confidence 44443 234577999999999999985 48899999995 777777776433 45789999 6999887766
Q ss_pred C-CCeEEEEEeccCCCCccceeeeEEeec----------cCC-ceEEEEEccCCCEE-EEeeCCCeEEEEEccCCcceee
Q 037555 123 R-DRQFSVFAIQRTGTGEIDYQLIARQEA----------HKR-IIWSCSWNPFGHEF-ATGSRDKTVKIWAVENKSSVKQ 189 (298)
Q Consensus 123 ~-dg~i~iwd~~~~~~~~~~~~~~~~~~~----------~~~-~v~~~~~~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~ 189 (298)
. ++.+.++|..+ .+.+..+.. |.. .+..+..++++..+ +....+|.|.++|....+.+.
T Consensus 263 ~~~~~v~ViD~~t-------~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~- 334 (567)
T 1qks_A 263 YWPPQYVIMDGET-------LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK- 334 (567)
T ss_dssp EETTEEEEEETTT-------CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE-
T ss_pred ccCCeEEEEECCC-------CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccce-
Confidence 5 69999999776 334443321 222 57788888876544 445567999999998754332
Q ss_pred eeecCCCCCceEEEEEeeccccCCccEEEE-eecCCcEEEEEeeecccccccCCCCCCcceeeeecc--CCcccceEEEE
Q 037555 190 ILALPPFNSSVTALSWVGLDRQKNHGFLAV-GMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDP--FACHVAAVNRM 266 (298)
Q Consensus 190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~-g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~ 266 (298)
+..+. .......+.|+|++ .++++ ...++.|.++|+.++ +....+.. ...|.+.-..+
T Consensus 335 v~~i~-~~~~~~d~~~~pdg-----r~~~va~~~sn~V~ViD~~t~-------------kl~~~i~vgg~~Phpg~g~~~ 395 (567)
T 1qks_A 335 TTEIS-AERFLHDGGLDGSH-----RYFITAANARNKLVVIDTKEG-------------KLVAIEDTGGQTPHPGRGANF 395 (567)
T ss_dssp EEEEE-CCSSEEEEEECTTS-----CEEEEEEGGGTEEEEEETTTT-------------EEEEEEECSSSSBCCTTCEEE
T ss_pred eeeee-ccccccCceECCCC-----CEEEEEeCCCCeEEEEECCCC-------------cEEEEEeccCcCCCCccceee
Confidence 11222 34456788999998 45554 446789999999876 33333321 12343222122
Q ss_pred EeecCCCCCCCcceEEEeee-CCCcEEEeEec
Q 037555 267 AWKTHEKPKNSRTMQLASCG-ADNTVRVFQVN 297 (298)
Q Consensus 267 ~~~~~~~~~~~~~~~l~s~~-~d~~i~iw~~~ 297 (298)
++|++. ..++++. .++.|.++|..
T Consensus 396 -~~p~~g------~v~~t~~~g~~~Vsvid~~ 420 (567)
T 1qks_A 396 -VHPTFG------PVWATSHMGDDSVALIGTD 420 (567)
T ss_dssp -EETTTE------EEEEEEBSSSSEEEEEECC
T ss_pred -ECCCCC------cEEEeCCCCCCeEEEecCC
Confidence 578741 4555553 46889998863
No 206
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.34 E-value=2.6e-09 Score=84.58 Aligned_cols=204 Identities=10% Similarity=0.084 Sum_probs=126.6
Q ss_pred CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEecc
Q 037555 55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQR 134 (298)
Q Consensus 55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 134 (298)
+..-.-+..|++++..|+... ..++.|..||..+++. ..+. ....+.+++++++++++++ . ++.|.+||..+
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d----~~~~~i~~~d~~~~~~-~~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~ 82 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVD----IPAKKVCRWDSFTKQV-QRVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKE 82 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEE----TTTTEEEEEETTTCCE-EEEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTT
T ss_pred CCccccCCeEECCCCEEEEEE----CCCCEEEEEECCCCcE-EEEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCC
Confidence 334566889999655544443 3478999999987654 2333 4567899999999995554 3 56888999875
Q ss_pred CCCCccceeeeEEeec--cCCceEEEEEccCCCEEEEeeCC---------CeEEEEEccCCcceeeeeecCCCCCceEEE
Q 037555 135 TGTGEIDYQLIARQEA--HKRIIWSCSWNPFGHEFATGSRD---------KTVKIWAVENKSSVKQILALPPFNSSVTAL 203 (298)
Q Consensus 135 ~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d---------g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~ 203 (298)
.. ...+..... ....+..++++|+++++++.... ..-.+|.+........ +.........+
T Consensus 83 g~-----~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~---~~~~~~~pngi 154 (297)
T 3g4e_A 83 QS-----AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK---YFDQVDISNGL 154 (297)
T ss_dssp TE-----EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE---EEEEESBEEEE
T ss_pred Cc-----EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE---Eeeccccccce
Confidence 32 122221111 12357889999999976654321 2334555543222221 11123446789
Q ss_pred EEeeccccCCccEEEEeecCCcEEEEEee--ecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceE
Q 037555 204 SWVGLDRQKNHGFLAVGMESGVIELWSIS--VNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQ 281 (298)
Q Consensus 204 ~~~~~~~~~~~~~l~~g~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 281 (298)
+|+|++. .++++.+.++.|.+|++. ++.. .....+..+..+...+..+++.+++ ++
T Consensus 155 ~~spdg~----~lyv~~~~~~~i~~~~~d~~~G~~-----------~~~~~~~~~~~~~~~p~g~~~d~~G-------~l 212 (297)
T 3g4e_A 155 DWSLDHK----IFYYIDSLSYSVDAFDYDLQTGQI-----------SNRRSVYKLEKEEQIPDGMCIDAEG-------KL 212 (297)
T ss_dssp EECTTSC----EEEEEEGGGTEEEEEEECTTTCCE-----------EEEEEEEECCGGGCEEEEEEEBTTS-------CE
T ss_pred EEcCCCC----EEEEecCCCCcEEEEeccCCCCcc-----------cCcEEEEECCCCCCCCCeeEECCCC-------CE
Confidence 9999983 344556667899999984 2210 1111222233345677899999998 77
Q ss_pred EEeeeCCCcEEEeEe
Q 037555 282 LASCGADNTVRVFQV 296 (298)
Q Consensus 282 l~s~~~d~~i~iw~~ 296 (298)
.++...++.|..||.
T Consensus 213 wva~~~~~~v~~~d~ 227 (297)
T 3g4e_A 213 WVACYNGGRVIRLDP 227 (297)
T ss_dssp EEEEETTTEEEEECT
T ss_pred EEEEcCCCEEEEEcC
Confidence 777777788988875
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.34 E-value=2.5e-09 Score=84.44 Aligned_cols=199 Identities=8% Similarity=0.022 Sum_probs=136.5
Q ss_pred cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeee-ccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEe
Q 037555 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMG-RLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAI 132 (298)
Q Consensus 54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 132 (298)
.....+.++++.++|.+.++. ..++.|.+|+.. ++... .+......+..+++.++++++++...++.|..+|.
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~-----~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~ 90 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQ-----HKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSK 90 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEE-----TTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred CCCCCcceeeECCCCCEEEEc-----CCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECC
Confidence 345678999999999988776 347889999987 54432 12233467899999999998887777889999987
Q ss_pred ccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccC
Q 037555 133 QRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQK 212 (298)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 212 (298)
. .. . ...........+..+++.++++++++...++.|..+|.. ++... + .+......+..+++.+++
T Consensus 91 ~-g~-----~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~-~-~~~~~~~~~~~i~~d~~g--- 157 (300)
T 2qc5_A 91 K-GG-----F-TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYE-Y-DLPNKGSYPAFITLGSDN--- 157 (300)
T ss_dssp T-SC-----E-EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEE-E-ECSSTTCCEEEEEECTTS---
T ss_pred C-CC-----e-EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEE-c-cCCCCCCCceeEEECCCC---
Confidence 6 21 1 111222234568899999999888777778899999987 44322 1 233344568899999987
Q ss_pred CccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEE
Q 037555 213 NHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVR 292 (298)
Q Consensus 213 ~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 292 (298)
.+.++...++.|..++. ++ ... .+. ...+...+..+++.+++ .++++....+.|.
T Consensus 158 --~l~v~~~~~~~i~~~~~-~g-------------~~~-~~~-~~~~~~~~~~i~~d~~g-------~l~v~~~~~~~i~ 212 (300)
T 2qc5_A 158 --ALWFTENQNNSIGRITN-TG-------------KLE-EYP-LPTNAAAPVGITSGNDG-------ALWFVEIMGNKIG 212 (300)
T ss_dssp --SEEEEETTTTEEEEECT-TC-------------CEE-EEE-CSSTTCCEEEEEECTTS-------SEEEEETTTTEEE
T ss_pred --CEEEEecCCCeEEEECC-CC-------------cEE-Eee-CCCCCCCcceEEECCCC-------CEEEEccCCCEEE
Confidence 66666656788999887 33 111 111 22334567889999988 6777666667787
Q ss_pred EeEe
Q 037555 293 VFQV 296 (298)
Q Consensus 293 iw~~ 296 (298)
+|+.
T Consensus 213 ~~~~ 216 (300)
T 2qc5_A 213 RITT 216 (300)
T ss_dssp EECT
T ss_pred EEcC
Confidence 7764
No 208
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.33 E-value=3.1e-09 Score=83.90 Aligned_cols=198 Identities=8% Similarity=-0.022 Sum_probs=134.5
Q ss_pred CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeee-ccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555 55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMG-RLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQ 133 (298)
Q Consensus 55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 133 (298)
+...+.++++.+++.++++. ..++.|.++|.. ++... .+......+.++++.++++++++...++.|..++..
T Consensus 60 ~~~~~~~i~~~~~g~l~v~~-----~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 133 (300)
T 2qc5_A 60 PDAKVMCLIVSSLGDIWFTE-----NGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD 133 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEE-----TTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred CCCcceeEEECCCCCEEEEe-----cCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC
Confidence 34678999999999887776 346789999987 54432 222234678999999999988887778889988875
Q ss_pred cCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCC
Q 037555 134 RTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKN 213 (298)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (298)
.. .. ...+......+..+++.++++.+++...++.|..+|. +++... + ........+..+++.+++
T Consensus 134 -g~-----~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~-~~~~~~~~~~~i~~d~~g---- 199 (300)
T 2qc5_A 134 -GT-----IY-EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-Y-PLPTNAAAPVGITSGNDG---- 199 (300)
T ss_dssp -SC-----EE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-E-ECSSTTCCEEEEEECTTS----
T ss_pred -CC-----EE-EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-e-eCCCCCCCcceEEECCCC----
Confidence 21 11 1122223456889999999997766666788999998 444322 2 233344568899999887
Q ss_pred ccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEE
Q 037555 214 HGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRV 293 (298)
Q Consensus 214 ~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 293 (298)
.+.++....+.|.+|+. ++ ... .+. ...+...+.++++++++ .++++...++.|..
T Consensus 200 -~l~v~~~~~~~i~~~~~-~g-------------~~~-~~~-~~~~~~~~~~i~~d~~g-------~l~v~~~~~~~i~~ 255 (300)
T 2qc5_A 200 -ALWFVEIMGNKIGRITT-TG-------------EIS-EYD-IPTPNARPHAITAGKNS-------EIWFTEWGANQIGR 255 (300)
T ss_dssp -SEEEEETTTTEEEEECT-TC-------------CEE-EEE-CSSTTCCEEEEEECSTT-------CEEEEETTTTEEEE
T ss_pred -CEEEEccCCCEEEEEcC-CC-------------cEE-EEE-CCCCCCCceEEEECCCC-------CEEEeccCCCeEEE
Confidence 56666656678999987 22 111 111 12345668899999998 66666666778887
Q ss_pred eEe
Q 037555 294 FQV 296 (298)
Q Consensus 294 w~~ 296 (298)
|+.
T Consensus 256 ~~~ 258 (300)
T 2qc5_A 256 ITN 258 (300)
T ss_dssp ECT
T ss_pred ECC
Confidence 764
No 209
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.31 E-value=3.4e-09 Score=86.57 Aligned_cols=83 Identities=8% Similarity=0.019 Sum_probs=58.9
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEecc-----CCCCceEEEEEEcCCceeeeccccc-------cccEEEEEEcCCCC
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKA-----QSTAAAEIWLWEVGSWKAMGRLQSH-------SLTVTQIRFSHDDN 116 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~-----~~~~d~~i~vw~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~ 116 (298)
+.++.....+ .++++|+|++|+++... ++..++.|.+||..+++.+..+... ......++|+|||+
T Consensus 60 ~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~ 137 (373)
T 2mad_H 60 LGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA 137 (373)
T ss_pred EEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCC
Confidence 4444433333 99999999999988521 0012578999999988777665421 12345899999999
Q ss_pred EEEEEeC--CCeEEEEEecc
Q 037555 117 LLLSVSR--DRQFSVFAIQR 134 (298)
Q Consensus 117 ~l~~~~~--dg~i~iwd~~~ 134 (298)
+|+++.. ++.|.++| .+
T Consensus 138 ~l~v~n~~~~~~v~viD-~t 156 (373)
T 2mad_H 138 DLLFFQFAAGPAVGLVV-QG 156 (373)
T ss_pred EEEEEecCCCCeEEEEE-CC
Confidence 9998874 57899999 76
No 210
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.28 E-value=2.3e-09 Score=85.29 Aligned_cols=193 Identities=8% Similarity=0.016 Sum_probs=119.2
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc---c-ccccEEEEEEcCCCCEEEE----
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ---S-HSLTVTQIRFSHDDNLLLS---- 120 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~l~~---- 120 (298)
...+..+...+..++++++|+++++. ..++.|.+|+.+ ++...... + ....+.+++++++|+++++
T Consensus 78 ~~~~~~~~~~~~gl~~d~dG~l~v~~-----~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~ 151 (305)
T 3dr2_A 78 VDVLLDATAFTNGNAVDAQQRLVHCE-----HGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPF 151 (305)
T ss_dssp EEEEEESCSCEEEEEECTTSCEEEEE-----TTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSG
T ss_pred EEEEeCCCCccceeeECCCCCEEEEE-----CCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCC
Confidence 44555566778999999999977665 335789999986 54322111 1 1134678999999998886
Q ss_pred EeC-------------CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC------CeEEEEEc
Q 037555 121 VSR-------------DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD------KTVKIWAV 181 (298)
Q Consensus 121 ~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~wd~ 181 (298)
+.. .+.|..+|..... ...+ . .......++|+|+++.|+.+... +.|.+|++
T Consensus 152 g~~~~~~~~~~~~~~~~~~v~~~d~~~g~-----~~~~---~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~ 222 (305)
T 3dr2_A 152 GLRKPSQGCPADPELAHHSVYRLPPDGSP-----LQRM---A-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAW 222 (305)
T ss_dssp GGSCGGGSCCCCCSSSCEEEEEECSSSCC-----CEEE---E-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEE
T ss_pred CccccccccccccccCCCeEEEEcCCCCc-----EEEE---e-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEe
Confidence 332 2456666654321 1111 1 23456789999999988877665 78999998
Q ss_pred cCCcceeeeeec-CCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCccc
Q 037555 182 ENKSSVKQILAL-PPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHV 260 (298)
Q Consensus 182 ~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (298)
.... +.....+ ......+..+++.+++ . |.++..++ |.+|+.. + +.+..+.. +.
T Consensus 223 ~~~~-l~~~~~~~~~~~~~pdgi~~d~~G-----~-lwv~~~~g-v~~~~~~-g-------------~~~~~~~~---~~ 277 (305)
T 3dr2_A 223 RDGA-LHDRRHFASVPDGLPDGFCVDRGG-----W-LWSSSGTG-VCVFDSD-G-------------QLLGHIPT---PG 277 (305)
T ss_dssp ETTE-EEEEEEEECCSSSCCCSEEECTTS-----C-EEECCSSE-EEEECTT-S-------------CEEEEEEC---SS
T ss_pred cCCC-ccCCeEEEECCCCCCCeEEECCCC-----C-EEEecCCc-EEEECCC-C-------------CEEEEEEC---CC
Confidence 7644 2111111 1123445678888887 5 44555444 8888874 2 33333331 22
Q ss_pred ceEEEEEeecCCCCCCCcceEEEeeeCCC
Q 037555 261 AAVNRMAWKTHEKPKNSRTMQLASCGADN 289 (298)
Q Consensus 261 ~~v~~~~~~~~~~~~~~~~~~l~s~~~d~ 289 (298)
.+.+++|.+++ ..|..++.++
T Consensus 278 -~~~~~~f~~d~-------~~L~it~~~~ 298 (305)
T 3dr2_A 278 -TASNCTFDQAQ-------QRLFITGGPC 298 (305)
T ss_dssp -CCCEEEECTTS-------CEEEEEETTE
T ss_pred -ceeEEEEeCCC-------CEEEEEcCCe
Confidence 47889999887 5666666554
No 211
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.26 E-value=1.6e-09 Score=87.64 Aligned_cols=209 Identities=8% Similarity=0.021 Sum_probs=126.3
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecc-------ccccccEEEEEEcCCCCEEEEEeC-----C
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRL-------QSHSLTVTQIRFSHDDNLLLSVSR-----D 124 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~-----d 124 (298)
..+..++++++|+++++... ..++.++||.+.+++.. .+ ..+-..+..++++++++++++-.. +
T Consensus 17 ~~p~~va~~~~g~~~v~~~~---~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~ 92 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQ---FYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSV 92 (343)
T ss_dssp SCEEEEEECTTSCEEEEECG---GGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSC
T ss_pred CCcceEEECCCCCEEEEeCC---CCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCC
Confidence 67999999999999988643 11232555555445433 22 234567999999999876665443 5
Q ss_pred CeEEEEEeccCCCCccceeeeEEeec------cCCceEEEEEccCCCEE-EEee---CCCeEEEEEccCCcceeeeeecC
Q 037555 125 RQFSVFAIQRTGTGEIDYQLIARQEA------HKRIIWSCSWNPFGHEF-ATGS---RDKTVKIWAVENKSSVKQILALP 194 (298)
Q Consensus 125 g~i~iwd~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l-~~~~---~dg~i~~wd~~~~~~~~~~~~~~ 194 (298)
+.|.+||+.+ .+.+..+.. +...+..+++++++..+ ++-. .++.|.+||+.+++.... +.
T Consensus 93 ~~i~~~d~~t-------g~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~---~~ 162 (343)
T 2qe8_A 93 PKLVAWDTLN-------NQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARV---LQ 162 (343)
T ss_dssp CEEEEEETTT-------TEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEE---CT
T ss_pred CeEEEEECCC-------CeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEE---ec
Confidence 7899999876 333333322 22356889999865555 4444 578899999987654431 11
Q ss_pred CC-----------------------------CCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCC
Q 037555 195 PF-----------------------------NSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPS 245 (298)
Q Consensus 195 ~~-----------------------------~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~ 245 (298)
.| ...+..++|+|++ ..|+.+..++. ++|.+........ ...
T Consensus 163 ~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-----~~ly~~~~~~~-~l~~~~~~~~~~~---~~~ 233 (343)
T 2qe8_A 163 GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-----EWLYLSPMHST-SMYRIKSADLSNL---QLT 233 (343)
T ss_dssp TCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTS-----CEEEEEESSCS-EEEEEEHHHHTCT---TCC
T ss_pred CCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCC-----CEEEEEeCCCC-eEEEEEHHHhcCC---CCC
Confidence 10 1235789999988 67777766553 4444432110000 000
Q ss_pred CcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 246 TANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 246 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
.......+. ..++......+++++++ .++++...++.|.+||.
T Consensus 234 ~~~~~~~~~-~~g~~g~pdgia~d~~G-------~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 234 DAELGSKIE-RYSEKPICDGISIDKDH-------NIYVGDLAHSAIGVITS 276 (343)
T ss_dssp HHHHHTTCE-EEEECCSCSCEEECTTC-------CEEEEEGGGTEEEEEET
T ss_pred hhhhhcceE-ecccCCCCceEEECCCC-------CEEEEccCCCeEEEEEC
Confidence 000000000 01223345678999988 88888888899999985
No 212
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.26 E-value=1.3e-08 Score=81.60 Aligned_cols=181 Identities=9% Similarity=0.030 Sum_probs=114.9
Q ss_pred CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc----cccccEEEEEEcCCCCEEEEEeCC----Ce
Q 037555 55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ----SHSLTVTQIRFSHDDNLLLSVSRD----RQ 126 (298)
Q Consensus 55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~d----g~ 126 (298)
....+.++.|+++|+++++. ...|.+||..+++...... .....+.+++++|+|+++++...+ +.
T Consensus 88 ~~~~v~~i~~~~dg~l~v~~-------~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~ 160 (326)
T 2ghs_A 88 LPFMGSALAKISDSKQLIAS-------DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGA 160 (326)
T ss_dssp CSSCEEEEEEEETTEEEEEE-------TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTC
T ss_pred CCCcceEEEEeCCCeEEEEE-------CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCc
Confidence 34679999999999888765 2349999988776432211 112468899999999977665422 23
Q ss_pred EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEe-eCCCeEEEEEcc--CC-cce--eeeeecCCCCCce
Q 037555 127 FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATG-SRDKTVKIWAVE--NK-SSV--KQILALPPFNSSV 200 (298)
Q Consensus 127 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~--~~-~~~--~~~~~~~~~~~~v 200 (298)
..||.+.. .... .+.........++|+|+++.++.+ +.++.|.+||+. ++ ... ..+..+......+
T Consensus 161 ~~l~~~~~-------g~~~-~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p 232 (326)
T 2ghs_A 161 GSIYHVAK-------GKVT-KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGM 232 (326)
T ss_dssp EEEEEEET-------TEEE-EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEE
T ss_pred eEEEEEeC-------CcEE-EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCC
Confidence 34444442 1111 122233456789999999877555 457899999986 44 211 1122333334556
Q ss_pred EEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEee-cCC
Q 037555 201 TALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWK-THE 272 (298)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~ 272 (298)
..+++.+++ .+.++...++.|.+|+.. + +....+. .+...+.+++|. +++
T Consensus 233 ~gi~~d~~G-----~lwva~~~~~~v~~~d~~-g-------------~~~~~i~---~~~~~~~~~af~g~d~ 283 (326)
T 2ghs_A 233 DGSVCDAEG-----HIWNARWGEGAVDRYDTD-G-------------NHIARYE---VPGKQTTCPAFIGPDA 283 (326)
T ss_dssp EEEEECTTS-----CEEEEEETTTEEEEECTT-C-------------CEEEEEE---CSCSBEEEEEEESTTS
T ss_pred CeeEECCCC-----CEEEEEeCCCEEEEECCC-C-------------CEEEEEE---CCCCCcEEEEEecCCC
Confidence 788898887 566666567889999873 3 3333332 244579999998 876
No 213
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.25 E-value=2.6e-09 Score=84.96 Aligned_cols=205 Identities=12% Similarity=0.005 Sum_probs=127.2
Q ss_pred ceEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeE
Q 037555 48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQF 127 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 127 (298)
.+..+...........|+|+++.|+... ..++.|..|+.. ++ ...+..+...+..++++++|+++++...++.|
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d----~~~~~i~~~~~~-g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v 109 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSD----LVGRRVLGWRED-GT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAI 109 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEE----TTTTEEEEEETT-SC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEE
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEE----CCCCEEEEEeCC-CC-EEEEeCCCCccceeeECCCCCEEEEECCCCEE
Confidence 3555666666788999999998444443 457889999984 44 34455566778999999999977666666889
Q ss_pred EEEEeccCCCCccceeeeE-Eeec-cCCceEEEEEccCCCEEEE----eeC-------------CCeEEEEEccCCccee
Q 037555 128 SVFAIQRTGTGEIDYQLIA-RQEA-HKRIIWSCSWNPFGHEFAT----GSR-------------DKTVKIWAVENKSSVK 188 (298)
Q Consensus 128 ~iwd~~~~~~~~~~~~~~~-~~~~-~~~~v~~~~~~~~~~~l~~----~~~-------------dg~i~~wd~~~~~~~~ 188 (298)
.+|+.. +. ...+. .... ....+..++++|+++++++ |.. .+.|..+|..+++...
T Consensus 110 ~~~~~~-g~-----~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~ 183 (305)
T 3dr2_A 110 TRSDAD-GQ-----AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR 183 (305)
T ss_dssp EEECTT-SC-----EEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE
T ss_pred EEECCC-CC-----EEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE
Confidence 999865 21 11111 1111 1234678999999998886 332 2467777776655433
Q ss_pred eeeecCCCCCceEEEEEeeccccCCccEEEEeecC------CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccce
Q 037555 189 QILALPPFNSSVTALSWVGLDRQKNHGFLAVGMES------GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAA 262 (298)
Q Consensus 189 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (298)
. . .......++|+|++ ..|+.+... +.|++|++.... . .....+... ....
T Consensus 184 ~--~---~~~~p~gl~~spdg-----~~lyv~~~~~~~~~~~~i~~~~~~~~~-l----------~~~~~~~~~--~~~~ 240 (305)
T 3dr2_A 184 M--A---DLDHPNGLAFSPDE-----QTLYVSQTPEQGHGSVEITAFAWRDGA-L----------HDRRHFASV--PDGL 240 (305)
T ss_dssp E--E---EESSEEEEEECTTS-----SEEEEEECCC---CCCEEEEEEEETTE-E----------EEEEEEECC--SSSC
T ss_pred E--e---cCCCCcceEEcCCC-----CEEEEEecCCcCCCCCEEEEEEecCCC-c----------cCCeEEEEC--CCCC
Confidence 1 1 22456789999998 566666554 689999987531 0 111111111 1233
Q ss_pred EEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 263 VNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 263 v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
...+++.+++ ++.++. .++ |.+|+.
T Consensus 241 pdgi~~d~~G-------~lwv~~-~~g-v~~~~~ 265 (305)
T 3dr2_A 241 PDGFCVDRGG-------WLWSSS-GTG-VCVFDS 265 (305)
T ss_dssp CCSEEECTTS-------CEEECC-SSE-EEEECT
T ss_pred CCeEEECCCC-------CEEEec-CCc-EEEECC
Confidence 4567888887 644444 343 777753
No 214
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.24 E-value=3.8e-09 Score=87.49 Aligned_cols=212 Identities=10% Similarity=0.070 Sum_probs=127.1
Q ss_pred EEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecc----ccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCC
Q 037555 62 LCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRL----QSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGT 137 (298)
Q Consensus 62 ~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 137 (298)
++|+++++.|+++.. .....|.+++...+.....+ ......+.+++++|++..|+.+..++.|..||.....
T Consensus 176 ia~~~~g~~l~~~d~---~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~- 251 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGW---EGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE- 251 (409)
T ss_dssp CEECTTSSEEEEEBS---STTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC-
T ss_pred eeEecCCCcEEEEec---CCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC-
Confidence 899999998888853 11228999998755433333 2144567889999954455557778999999987532
Q ss_pred CccceeeeEE--eeccCCc--eEEEEEccC-CCEEEEeeCCCeEEEEEccCCcceeeeeecC---C---------CCCce
Q 037555 138 GEIDYQLIAR--QEAHKRI--IWSCSWNPF-GHEFATGSRDKTVKIWAVENKSSVKQILALP---P---------FNSSV 200 (298)
Q Consensus 138 ~~~~~~~~~~--~~~~~~~--v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~---~---------~~~~v 200 (298)
...... ....... ...++|+|+ +.++++-..++.|+.|+.... ...+.... + .-...
T Consensus 252 ----~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P 325 (409)
T 3hrp_A 252 ----VTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQP 325 (409)
T ss_dssp ----EEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSE
T ss_pred ----EEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCC
Confidence 111111 1111111 138999995 555555566789999987643 22111110 0 01347
Q ss_pred EEEEEeeccccCCccEEEEee-cCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcc
Q 037555 201 TALSWVGLDRQKNHGFLAVGM-ESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRT 279 (298)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 279 (298)
..++++|++ .++++-. .++.|+.|++.++.......... ......- ......-.....|++++++
T Consensus 326 ~gia~d~dG-----~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~-~~g~~~g-~~~~~~~~~P~giavd~~g------- 391 (409)
T 3hrp_A 326 NGMTVDEDG-----NFYIVDGFKGYCLRKLDILDGYVSTVAGQVD-VASQIDG-TPLEATFNYPYDICYDGEG------- 391 (409)
T ss_dssp EEEEECTTC-----CEEEEETTTTCEEEEEETTTTEEEEEEECTT-CBSCCCB-STTTCCBSSEEEEEECSSS-------
T ss_pred eEEEEeCCC-----CEEEEeCCCCCEEEEEECCCCEEEEEeCCCC-CCCcCCC-ChhceEeCCceEEEEcCCC-------
Confidence 899999988 6777776 78899999965442110000000 0000000 0000113457899999998
Q ss_pred eEEEeeeCCCcEEEeEec
Q 037555 280 MQLASCGADNTVRVFQVN 297 (298)
Q Consensus 280 ~~l~s~~~d~~i~iw~~~ 297 (298)
.++++-..++.|+.++++
T Consensus 392 ~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 392 GYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp EEEEEESTTCEEEEEEEC
T ss_pred CEEEEECCCCeEEEEEeC
Confidence 888888889999988763
No 215
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.21 E-value=4.1e-09 Score=81.04 Aligned_cols=199 Identities=9% Similarity=-0.000 Sum_probs=131.0
Q ss_pred eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccccc-ccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCC
Q 037555 59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHS-LTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGT 137 (298)
Q Consensus 59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 137 (298)
...+.|++++.++++.+. ..++.|.++|+.+++.+..+.... .....+++.. +.+.++.-.++.+.++|..+
T Consensus 23 ~~Gl~~~~dg~Lyvstg~---~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t--- 95 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGL---YGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRT--- 95 (266)
T ss_dssp EEEEEECSTTEEEEEECS---TTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTT---
T ss_pred cccEEEeCCCeEEEECCC---CCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCC---
Confidence 679999998765555432 236899999999999887764211 1223455542 23444455689999999887
Q ss_pred CccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCC---CceEEEEEeeccccCCc
Q 037555 138 GEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFN---SSVTALSWVGLDRQKNH 214 (298)
Q Consensus 138 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~ 214 (298)
.+.+..+...... ...+++++..++++..++.|.++|..+.+....+..-. .. ..+..+.|. ++
T Consensus 96 ----~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~-~~~p~~~~nele~~-dg----- 162 (266)
T 2iwa_A 96 ----LSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKY-NGHRVIRLNELEYI-NG----- 162 (266)
T ss_dssp ----TEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEE-TTEECCCEEEEEEE-TT-----
T ss_pred ----CcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECC-CCcccccceeEEEE-CC-----
Confidence 5556655432111 23355677777777678999999999988776443211 11 135677877 55
Q ss_pred cEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCc-----------ccceEEEEEeecCCCCCCCcceEEE
Q 037555 215 GFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFAC-----------HVAAVNRMAWKTHEKPKNSRTMQLA 283 (298)
Q Consensus 215 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~~~~~~l~ 283 (298)
.+.+....++.|.+.|..++ +....+. +.+ .....+.|+|+|+++ .+++
T Consensus 163 ~lyvn~~~~~~V~vID~~tg-------------~V~~~I~-~~g~~~~~~~~~~~~~~v~nGIa~~~~~~------~lfV 222 (266)
T 2iwa_A 163 EVWANIWQTDCIARISAKDG-------------TLLGWIL-LPNLRKKLIDEGFRDIDVLNGIAWDQENK------RIFV 222 (266)
T ss_dssp EEEEEETTSSEEEEEETTTC-------------CEEEEEE-CHHHHHHHHHTTCTTCCCEEEEEEETTTT------EEEE
T ss_pred EEEEecCCCCeEEEEECCCC-------------cEEEEEE-CCCcccccccccccccCceEEEEEcCCCC------EEEE
Confidence 45555556789999999887 4444443 111 113568999999984 7888
Q ss_pred eeeCCCcEEEeEec
Q 037555 284 SCGADNTVRVFQVN 297 (298)
Q Consensus 284 s~~~d~~i~iw~~~ 297 (298)
++...+.|...++.
T Consensus 223 Tgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 223 TGKLWPKLFEIKLH 236 (266)
T ss_dssp EETTCSEEEEEEEE
T ss_pred ECCCCCeEEEEEEe
Confidence 88888888887763
No 216
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.20 E-value=1.5e-08 Score=81.29 Aligned_cols=197 Identities=9% Similarity=-0.051 Sum_probs=120.5
Q ss_pred ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCC
Q 037555 58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGT 137 (298)
Q Consensus 58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 137 (298)
-..+..|+|++..++... ..++.|.+|+..+++.. .+. ....+.+++|+++++++++. .+ .|.+||.....
T Consensus 50 ~~egp~~~~~~~~l~~~d----~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~- 120 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFN----ILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGV- 120 (326)
T ss_dssp BEEEEEEETTTTEEEEEE----GGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCC-
T ss_pred CCcCCeEeCCCCEEEEEE----CCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCc-
Confidence 457889999765554443 34789999999876543 233 34678999999999877754 34 48889876532
Q ss_pred CccceeeeEEeec--cCCceEEEEEccCCCEEEEeeC------CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecc
Q 037555 138 GEIDYQLIARQEA--HKRIIWSCSWNPFGHEFATGSR------DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLD 209 (298)
Q Consensus 138 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (298)
...+..... ....+..++++|+++++++... .+.|..++ +++. ..+ .........++|+|++
T Consensus 121 ----~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~---~~~~~~~~~i~~s~dg 190 (326)
T 2ghs_A 121 ----LTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKL---FADISIPNSICFSPDG 190 (326)
T ss_dssp ----EEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEE---EEEESSEEEEEECTTS
T ss_pred ----EEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEe---eCCCcccCCeEEcCCC
Confidence 111111111 1235889999999987665542 24455555 3332 211 1122346789999998
Q ss_pred ccCCccEE-EEeecCCcEEEEEee--ec-ccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEee
Q 037555 210 RQKNHGFL-AVGMESGVIELWSIS--VN-RTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASC 285 (298)
Q Consensus 210 ~~~~~~~l-~~g~~dg~i~vwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~ 285 (298)
..+ ++...++.|.+|++. ++ ..... ..... +......+..+++.+++ .+.++.
T Consensus 191 -----~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~--------~~~~~---~~~~~~~p~gi~~d~~G-------~lwva~ 247 (326)
T 2ghs_A 191 -----TTGYFVDTKVNRLMRVPLDARTGLPTGKA--------EVFID---STGIKGGMDGSVCDAEG-------HIWNAR 247 (326)
T ss_dssp -----CEEEEEETTTCEEEEEEBCTTTCCBSSCC--------EEEEE---CTTSSSEEEEEEECTTS-------CEEEEE
T ss_pred -----CEEEEEECCCCEEEEEEcccccCCcccCc--------eEEEE---CCCCCCCCCeeEECCCC-------CEEEEE
Confidence 555 444567899999986 32 11000 11111 22234556788999888 676666
Q ss_pred eCCCcEEEeEe
Q 037555 286 GADNTVRVFQV 296 (298)
Q Consensus 286 ~~d~~i~iw~~ 296 (298)
..++.|.+|+.
T Consensus 248 ~~~~~v~~~d~ 258 (326)
T 2ghs_A 248 WGEGAVDRYDT 258 (326)
T ss_dssp ETTTEEEEECT
T ss_pred eCCCEEEEECC
Confidence 56677888864
No 217
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.17 E-value=7.3e-09 Score=85.43 Aligned_cols=212 Identities=7% Similarity=0.008 Sum_probs=126.7
Q ss_pred ceEEeccCCCceEEEEEcCCCCEEEeEeccC-----CCCceEEEEEEcCCceeeeccccc-------cccEEEEEEcCCC
Q 037555 48 ESHKLYGHGNELFSLCCDHQGKLVASSCKAQ-----STAAAEIWLWEVGSWKAMGRLQSH-------SLTVTQIRFSHDD 115 (298)
Q Consensus 48 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~-----~~~d~~i~vw~~~~~~~~~~~~~~-------~~~v~~~~~~~~~ 115 (298)
.+.++.--..+ .+.++|+|+.|+++.... +..++.|.++|..+++.+..+.-. ......+.|+|||
T Consensus 111 vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDG 188 (426)
T 3c75_H 111 ILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDN 188 (426)
T ss_dssp EEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTS
T ss_pred EEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCC
Confidence 34445433445 899999999888885200 012678999999999888776421 1234578999999
Q ss_pred CEEEEEeC--CCeEEEEEeccCCCCccceeeeEEeeccCC-------ceEEE----------------------------
Q 037555 116 NLLLSVSR--DRQFSVFAIQRTGTGEIDYQLIARQEAHKR-------IIWSC---------------------------- 158 (298)
Q Consensus 116 ~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-------~v~~~---------------------------- 158 (298)
++++++.. ++.|.+.|+.+. +.+..+..... .-..+
T Consensus 189 k~lyV~n~~~~~~VsVID~~t~-------kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v 261 (426)
T 3c75_H 189 KNLLFYQFSPAPAVGVVDLEGK-------TFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHT 261 (426)
T ss_dssp SEEEEEECSSSCEEEEEETTTT-------EEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSC
T ss_pred CEEEEEecCCCCeEEEEECCCC-------eEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeecc
Confidence 99998874 578999999873 33332221000 00011
Q ss_pred ---------EEccCCCEEEEeeCCCeEEEEEccCCcce--eeeeecCC-------CCCceEEEEEeeccccCCccEEEEe
Q 037555 159 ---------SWNPFGHEFATGSRDKTVKIWAVENKSSV--KQILALPP-------FNSSVTALSWVGLDRQKNHGFLAVG 220 (298)
Q Consensus 159 ---------~~~~~~~~l~~~~~dg~i~~wd~~~~~~~--~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~l~~g 220 (298)
.+.+++..++..+..+.|.+.|+...... ..+..... .......++++|++ ..+++.
T Consensus 262 ~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg-----~rlyVa 336 (426)
T 3c75_H 262 EDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQS-----DRIYLL 336 (426)
T ss_dssp TTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGG-----TEEEEE
T ss_pred CCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCC-----CEEEEE
Confidence 22344444444444555666665433211 00000000 01112236788887 445544
Q ss_pred ec----------CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcce-EEEeee-CC
Q 037555 221 ME----------SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTM-QLASCG-AD 288 (298)
Q Consensus 221 ~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~l~s~~-~d 288 (298)
.. ++.|.++|..+. +.+..+. -......|.|+|++ + ++++.. .+
T Consensus 337 ~~~~~~gthk~~s~~VsVID~~T~-------------kvv~~I~----vg~~P~gia~spDg-------~~~lyv~n~~s 392 (426)
T 3c75_H 337 VDQRDEWKHKAASRFVVVLNAETG-------------ERINKIE----LGHEIDSINVSQDA-------EPLLYALSAGT 392 (426)
T ss_dssp EEECCTTCTTSCEEEEEEEETTTC-------------CEEEEEE----EEEEECEEEECCSS-------SCEEEEEETTT
T ss_pred ecccccccccCCCCEEEEEECCCC-------------eEEEEEE----CCCCcCeEEEccCC-------CEEEEEEcCCC
Confidence 32 357999999877 5555553 23358899999999 6 777776 58
Q ss_pred CcEEEeEec
Q 037555 289 NTVRVFQVN 297 (298)
Q Consensus 289 ~~i~iw~~~ 297 (298)
+.|.++|+.
T Consensus 393 ~~VsVID~~ 401 (426)
T 3c75_H 393 QTLHIYDAA 401 (426)
T ss_dssp TEEEEEETT
T ss_pred CeEEEEECC
Confidence 999999964
No 218
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.17 E-value=2.7e-08 Score=81.22 Aligned_cols=146 Identities=15% Similarity=0.102 Sum_probs=102.2
Q ss_pred EcCCCCEEEeEeccCCCCce---EEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe----------CCCeEEEE
Q 037555 64 CDHQGKLVASSCKAQSTAAA---EIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS----------RDRQFSVF 130 (298)
Q Consensus 64 ~s~~~~~l~~~~~~~~~~d~---~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iw 130 (298)
..|+++++.+.... ... .|.++|..+++.+..+.....+ .++++||+++++++. .++.|.+|
T Consensus 28 ~~~~~~~~yv~~~~---~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~vi 102 (373)
T 2mad_H 28 PGADGRRSYINLPA---HHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVF 102 (373)
T ss_pred CCCCCCEEEEeCCc---ccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEE
Confidence 34677777776310 122 8999999999988777644443 899999999988886 36789999
Q ss_pred EeccCCCCccceeeeEEeecc-------CCceEEEEEccCCCEEEEeeC--CCeEEEEEccCCcceeeeee-cCCCCCce
Q 037555 131 AIQRTGTGEIDYQLIARQEAH-------KRIIWSCSWNPFGHEFATGSR--DKTVKIWAVENKSSVKQILA-LPPFNSSV 200 (298)
Q Consensus 131 d~~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~-~~~~~~~v 200 (298)
|..+ .+.+..+... ......+.|+|++++|+++.. ++.|.++| .+++... . +. ...
T Consensus 103 D~~t-------~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~---~~i~-~~~-- 168 (373)
T 2mad_H 103 DPVT-------FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDD---QLLS-SPT-- 168 (373)
T ss_pred ECCC-------CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEe---EEcC-CCc--
Confidence 9876 3333333211 123457899999999998874 57899999 8887765 3 33 222
Q ss_pred EEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555 201 TALSWVGLDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
++.+.|.+. ..+++.+.||.+.+++. ++
T Consensus 169 -~~~~~~~~~----~~~~~~~~dg~~~~vd~-~g 196 (373)
T 2mad_H 169 -CYHIHPGAP----STFYLLCAQGGLAKTDH-AG 196 (373)
T ss_pred -eEEEEeCCC----ceEEEEcCCCCEEEEEC-CC
Confidence 245566653 56677778999999999 65
No 219
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.12 E-value=4.3e-09 Score=85.11 Aligned_cols=202 Identities=6% Similarity=-0.035 Sum_probs=124.0
Q ss_pred cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc------ccccEEEEEEcCCCCE-EEEEe---C
Q 037555 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS------HSLTVTQIRFSHDDNL-LLSVS---R 123 (298)
Q Consensus 54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~-l~~~~---~ 123 (298)
+|-..+..++++++++++++-.......+..|.+||+.+++.+..+.. +...+..+++++++.. +++-. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~ 143 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDD 143 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGG
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCC
Confidence 355689999999998866654210000146899999998886655432 2245688999986544 45544 6
Q ss_pred CCeEEEEEeccCCCCccceeeeEEeec-----------------------------cCCceEEEEEccCCCEEEEeeCCC
Q 037555 124 DRQFSVFAIQRTGTGEIDYQLIARQEA-----------------------------HKRIIWSCSWNPFGHEFATGSRDK 174 (298)
Q Consensus 124 dg~i~iwd~~~~~~~~~~~~~~~~~~~-----------------------------~~~~v~~~~~~~~~~~l~~~~~dg 174 (298)
++.|.+||+.... ....+.. ....+..++|+|+++.|+++..++
T Consensus 144 ~~~i~v~d~~~g~-------~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~ 216 (343)
T 2qe8_A 144 KAALIRVDLQTGL-------AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHS 216 (343)
T ss_dssp GCEEEEEETTTCC-------EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSC
T ss_pred CCeEEEEECCCCC-------EEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCC
Confidence 7899999987532 1111110 012368899999999888887665
Q ss_pred -eEEEEEccC---Cc-----ceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCC
Q 037555 175 -TVKIWAVEN---KS-----SVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPS 245 (298)
Q Consensus 175 -~i~~wd~~~---~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~ 245 (298)
.|..++... .. ....+ ...++......+++++++ .++++...++.|.+||..++
T Consensus 217 ~~l~~~~~~~~~~~~~~~~~~~~~~-~~~g~~g~pdgia~d~~G-----~l~va~~~~~~V~~~d~~~G----------- 279 (343)
T 2qe8_A 217 TSMYRIKSADLSNLQLTDAELGSKI-ERYSEKPICDGISIDKDH-----NIYVGDLAHSAIGVITSADR----------- 279 (343)
T ss_dssp SEEEEEEHHHHTCTTCCHHHHHTTC-EEEEECCSCSCEEECTTC-----CEEEEEGGGTEEEEEETTTT-----------
T ss_pred CeEEEEEHHHhcCCCCChhhhhcce-EecccCCCCceEEECCCC-----CEEEEccCCCeEEEEECCCC-----------
Confidence 455554321 10 00000 000122345678999887 78888888899999998333
Q ss_pred CcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCc
Q 037555 246 TANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNT 290 (298)
Q Consensus 246 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~ 290 (298)
+. ..+... .+...+.+++|.+++ .++++.+..+.
T Consensus 280 --~~-~~~~~~-~~~~~p~~va~~~~g-------~l~v~~~~~~~ 313 (343)
T 2qe8_A 280 --AY-KLLVTD-EKLSWTDSFNFGSDG-------YLYFDCNQLHH 313 (343)
T ss_dssp --EE-EEEEEC-GGGSCEEEEEECTTS-------CEEEEECCGGG
T ss_pred --CE-EEEEEC-CceecCCeeEECCCC-------cEEEEeCcccc
Confidence 21 111111 134568899999988 67777664443
No 220
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.12 E-value=2.4e-08 Score=88.45 Aligned_cols=197 Identities=11% Similarity=0.077 Sum_probs=117.6
Q ss_pred EEEEEcCCCCEEEeEeccCC--------CCceEEEEEEcCCcee----eecccc-ccccEEEEEEcCCCCEEEEEeC---
Q 037555 60 FSLCCDHQGKLVASSCKAQS--------TAAAEIWLWEVGSWKA----MGRLQS-HSLTVTQIRFSHDDNLLLSVSR--- 123 (298)
Q Consensus 60 ~~~~~s~~~~~l~~~~~~~~--------~~d~~i~vw~~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~l~~~~~--- 123 (298)
..++|+ |++.|+.+..+.. .....|++|++.+... +..... |...+..+.|+|||++|+....
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~ 256 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANST 256 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSS
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCC
Confidence 567899 9999998876421 1235699999976542 222333 4456788999999998755432
Q ss_pred -CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC----CCeEEEEEccCCcc--eeeeeecCCC
Q 037555 124 -DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR----DKTVKIWAVENKSS--VKQILALPPF 196 (298)
Q Consensus 124 -dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~~wd~~~~~~--~~~~~~~~~~ 196 (298)
...|+++|+..+.. ....+..+....... |++++..|+..+. .+.|..+|+.+... .. .+..+
T Consensus 257 ~~~~i~~~d~~~~~~------~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~---~l~~~ 326 (693)
T 3iuj_A 257 SGNRLYVKDLSQENA------PLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWR---DLIPE 326 (693)
T ss_dssp SCCEEEEEETTSTTC------CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCE---EEECC
T ss_pred CCcEEEEEECCCCCC------ceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccE---EEecC
Confidence 35899999876421 133344455555554 6666666655543 26799999987654 22 22234
Q ss_pred CCceEEEEEeeccccCCccEEEEe-ecCC--cEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCC
Q 037555 197 NSSVTALSWVGLDRQKNHGFLAVG-MESG--VIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEK 273 (298)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~l~~g-~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 273 (298)
...+. .|++++ ..|+.. ..++ .|++|++... ....+. + .....+..+.++++++
T Consensus 327 ~~~~~--~~s~~g-----~~lv~~~~~~g~~~l~~~d~~g~--------------~~~~l~-~-p~~~~~~~~~~~~d~~ 383 (693)
T 3iuj_A 327 RQQVL--TVHSGS-----GYLFAEYMVDATARVEQFDYEGK--------------RVREVA-L-PGLGSVSGFNGKHDDP 383 (693)
T ss_dssp CSSCE--EEEEET-----TEEEEEEEETTEEEEEEECTTSC--------------EEEEEC-C-SSSSEEEECCCCTTCS
T ss_pred CCCEE--EEEEEC-----CEEEEEEEECCeeEEEEEECCCC--------------eeEEee-c-CCCceEEeeecCCCCC
Confidence 44444 888887 455544 4455 5778876532 222221 1 1345677778887772
Q ss_pred CCCCcceEEEeeeC---CCcEEEeEe
Q 037555 274 PKNSRTMQLASCGA---DNTVRVFQV 296 (298)
Q Consensus 274 ~~~~~~~~l~s~~~---d~~i~iw~~ 296 (298)
.++++.+. -+.|..||+
T Consensus 384 ------~l~~~~ss~~tP~~l~~~d~ 403 (693)
T 3iuj_A 384 ------ALYFGFENYAQPPTLYRFEP 403 (693)
T ss_dssp ------CEEEEEECSSSCCEEEEECT
T ss_pred ------EEEEEecCCCCCCEEEEEEC
Confidence 33333332 166777765
No 221
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.11 E-value=2.2e-08 Score=82.04 Aligned_cols=196 Identities=12% Similarity=0.174 Sum_probs=126.5
Q ss_pred CCCCEEEeEeccCCCCceEEEEEEcCCc----eeeeccc-------cccccEEEEEEcCCCCEEEEEeCC------CeEE
Q 037555 66 HQGKLVASSCKAQSTAAAEIWLWEVGSW----KAMGRLQ-------SHSLTVTQIRFSHDDNLLLSVSRD------RQFS 128 (298)
Q Consensus 66 ~~~~~l~~~~~~~~~~d~~i~vw~~~~~----~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~d------g~i~ 128 (298)
+++++|++.+. .++.|+|+|+.+. +..+++. .....-..+...|+| +++++..+ |.|.
T Consensus 93 ~~r~~l~v~~l----~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~ 167 (462)
T 2ece_A 93 IERRFLIVPGL----RSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGIL 167 (462)
T ss_dssp CCSCEEEEEBT----TTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEE
T ss_pred ccCCEEEEccC----CCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEE
Confidence 78888888764 5789999998755 5555552 112245677889999 77776655 7899
Q ss_pred EEEeccCCCCccceeeeEEeeccCC---ceEEEEEccCCCEEEEee-------------------CCCeEEEEEccCCcc
Q 037555 129 VFAIQRTGTGEIDYQLIARQEAHKR---IIWSCSWNPFGHEFATGS-------------------RDKTVKIWAVENKSS 186 (298)
Q Consensus 129 iwd~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~-------------------~dg~i~~wd~~~~~~ 186 (298)
++|..+ .+.+..+..... .-..+.|+|+++.+++.. .+.+|.+||+.+.+.
T Consensus 168 vlD~~T-------~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~ 240 (462)
T 2ece_A 168 MLDHYS-------FEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR 240 (462)
T ss_dssp EECTTT-------CCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE
T ss_pred EEECCC-------CeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE
Confidence 999887 455665542222 234688899999888885 368999999998766
Q ss_pred eeeeeecCCCCCceEEEEE--eeccccCCccEEEEee------cCCcEEEEEeeecccccccCCCCCCcceeeee--cc-
Q 037555 187 VKQILALPPFNSSVTALSW--VGLDRQKNHGFLAVGM------ESGVIELWSISVNRTNDVSTPAPSTANIIIRF--DP- 255 (298)
Q Consensus 187 ~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~~l~~g~------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~- 255 (298)
...+ .+.........+.| +|++ .++.+++ .++.|.+|....+.. .....+ ..
T Consensus 241 ~~tI-~vg~~g~~P~~i~f~~~Pdg-----~~aYV~~e~~~~~Lss~V~v~~~d~g~~-----------~~~~vIdi~~~ 303 (462)
T 2ece_A 241 IHSL-TLGEENRMALELRPLHDPTK-----LMGFINMVVSLKDLSSSIWLWFYEDGKW-----------NAEKVIEIPAE 303 (462)
T ss_dssp EEEE-ESCTTEEEEEEEEECSSTTC-----CEEEEEEEEETTTCCEEEEEEEEETTEE-----------EEEEEEEECCE
T ss_pred eeEE-ecCCCCCccceeEeeECCCC-----CEEEEEEeeeccCCCceEEEEEecCCce-----------eEEEEEeCCCc
Confidence 6533 22112234455655 8888 5666555 567888887754311 111111 10
Q ss_pred ------------CCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 256 ------------FACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 256 ------------~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
+.+-......|.+++|++ .+.++.-..+.|.+||+
T Consensus 304 ~v~~~lp~~~~~f~~~~~~pa~I~lS~DGr------fLYVSnrg~d~VavfdV 350 (462)
T 2ece_A 304 PLEGNLPEILKPFKAVPPLVTDIDISLDDK------FLYLSLWGIGEVRQYDI 350 (462)
T ss_dssp ECCSSCCGGGGGGTEECCCCCCEEECTTSC------EEEEEETTTTEEEEEEC
T ss_pred cccccccccccccccCCCceeEEEECCCCC------EEEEEeCCCCEEEEEEe
Confidence 000124578899999993 44455556789999987
No 222
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.11 E-value=3.2e-08 Score=80.27 Aligned_cols=202 Identities=10% Similarity=0.080 Sum_probs=123.1
Q ss_pred eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCC
Q 037555 59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTG 138 (298)
Q Consensus 59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 138 (298)
...+.|+|||++|+++.. ..++.|.++|+.+++.+.++.... . ...+....+.+++.+.||.+.+.++......
T Consensus 139 P~~~a~spDGk~lyVan~---~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v 212 (386)
T 3sjl_D 139 PWMTSLTPDGKTLLFYQF---SPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP 212 (386)
T ss_dssp GGGEEECTTSSEEEEEEC---SSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred CceEEEcCCCCEEEEEEc---CCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence 446899999999998853 236899999999999988875321 1 1223224456778888898888888652211
Q ss_pred ccceeeeEEeeccCCceE-EEEEc-cCCCEEEEeeCCCeEEEEEccCCcc--eeeeeecC-------CCCCceEEEEEee
Q 037555 139 EIDYQLIARQEAHKRIIW-SCSWN-PFGHEFATGSRDKTVKIWAVENKSS--VKQILALP-------PFNSSVTALSWVG 207 (298)
Q Consensus 139 ~~~~~~~~~~~~~~~~v~-~~~~~-~~~~~l~~~~~dg~i~~wd~~~~~~--~~~~~~~~-------~~~~~v~~~~~~~ 207 (298)
. ......+.....++. ...|. +++++++ .+.+|.|.+.|+.+... ...+..+. ........+++++
T Consensus 213 ~--~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~ 289 (386)
T 3sjl_D 213 E--ITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR 289 (386)
T ss_dssp E--EEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET
T ss_pred E--EeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC
Confidence 0 000011111112222 24554 5665444 56689999999976542 22111010 0123344577788
Q ss_pred ccccCCccEEEEeec----------CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCC
Q 037555 208 LDRQKNHGFLAVGME----------SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNS 277 (298)
Q Consensus 208 ~~~~~~~~~l~~g~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 277 (298)
++ ..++.... ...|.++|+.+. +.+..+. -...+.+|.+++|++
T Consensus 290 ~~-----~~lyV~~~~~~~~~hk~~~~~V~viD~~t~-------------kv~~~i~----vg~~~~~lavs~D~~---- 343 (386)
T 3sjl_D 290 AL-----DRIYLLVDQRDEWRHKTASRFVVVLDAKTG-------------ERLAKFE----MGHEIDSINVSQDEK---- 343 (386)
T ss_dssp TT-----TEEEEEEEECCTTCTTSCEEEEEEEETTTC-------------CEEEEEE----EEEEECEEEECSSSS----
T ss_pred CC-----CeEEEEeccccccccCCCCCEEEEEECCCC-------------eEEEEEE----CCCCcceEEECCCCC----
Confidence 76 45555432 247999999887 5556554 235788999999982
Q ss_pred cceEEEe-eeCCCcEEEeEec
Q 037555 278 RTMQLAS-CGADNTVRVFQVN 297 (298)
Q Consensus 278 ~~~~l~s-~~~d~~i~iw~~~ 297 (298)
.+|++ ...++.|.++|..
T Consensus 344 --~~ly~tn~~~~~VsViD~~ 362 (386)
T 3sjl_D 344 --PLLYALSTGDKTLYIHDAE 362 (386)
T ss_dssp --CEEEEEETTTTEEEEEETT
T ss_pred --eEEEEEcCCCCeEEEEECC
Confidence 25544 5668999999864
No 223
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.10 E-value=2.3e-08 Score=81.05 Aligned_cols=152 Identities=14% Similarity=0.128 Sum_probs=108.5
Q ss_pred EEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe----------CCCeEEEEE
Q 037555 62 LCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS----------RDRQFSVFA 131 (298)
Q Consensus 62 ~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd 131 (298)
....|+++.+++........++.|.++|..+++.+..+.....+ . ++++|||++++++. .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 34568898888885310012679999999999999888754555 4 99999999887775 367899999
Q ss_pred eccCCCCccceeeeEEeeccC-------CceEEEEEccCCCEEEEeeC--CCeEEEEEccCCcceeeeeecCCCCCceEE
Q 037555 132 IQRTGTGEIDYQLIARQEAHK-------RIIWSCSWNPFGHEFATGSR--DKTVKIWAVENKSSVKQILALPPFNSSVTA 202 (298)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~-------~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~ 202 (298)
..+ .+.+..+.-.. .....+.|+|++++++++.. ++.|.++|+.+.+.+..+ ...+ +
T Consensus 116 ~~t-------~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI-~v~g------~ 181 (386)
T 3sjl_D 116 PVT-------LLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML-DVPD------C 181 (386)
T ss_dssp TTT-------CCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE-ECCS------E
T ss_pred CCC-------CeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEE-ECCC------c
Confidence 987 44455443211 23457899999999988864 689999999999887744 2221 1
Q ss_pred EEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555 203 LSWVGLDRQKNHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 203 ~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 233 (298)
....|.+. ..+++.+.||.+.+.++..
T Consensus 182 ~~~~P~g~----~~~~~~~~DG~~~~v~~~~ 208 (386)
T 3sjl_D 182 YHIFPTAP----DTFFMHCRDGSLAKVAFGT 208 (386)
T ss_dssp EEEEEEET----TEEEEEETTSCEEEEECCS
T ss_pred ceeecCCC----ceeEEECCCCCEEEEECCC
Confidence 22335442 5667888899999998875
No 224
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.05 E-value=9.7e-12 Score=101.66 Aligned_cols=142 Identities=11% Similarity=0.040 Sum_probs=76.3
Q ss_pred CCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeE
Q 037555 67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIA 146 (298)
Q Consensus 67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 146 (298)
++..+++++ .|+.|+.||..+|+.+..+.. ..+.+..+..++..+++++.||.|+.||..+++ .+.
T Consensus 8 ~~~~v~~gs-----~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~-------~~w 73 (369)
T 2hz6_A 8 PETLLFVST-----LDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNE-------GLT 73 (369)
T ss_dssp CTTEEEEEE-----TTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----C-------CSE
T ss_pred eCCEEEEEc-----CCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCc-------eee
Confidence 467788884 489999999999998877764 455555556677788888899999999987643 222
Q ss_pred EeeccC-CceE-EEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCC
Q 037555 147 RQEAHK-RIIW-SCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESG 224 (298)
Q Consensus 147 ~~~~~~-~~v~-~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg 224 (298)
....+. ..+. ...+. .+..+++++.|+.|+.||.++++... .+..+. ...++|.+ ..+++++.++
T Consensus 74 ~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w---~~~~~~----~~~~~p~~-----~~v~~~~~dg 140 (369)
T 2hz6_A 74 KLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQ---TLSSAF----ADSLSPST-----SLLYLGRTEY 140 (369)
T ss_dssp ECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC----------------------------------EEEEEEEE
T ss_pred eeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEE---EecCCC----cccccccC-----CEEEEEecCC
Confidence 221111 0110 00111 34578888889999999999988766 333222 23445555 6888889999
Q ss_pred cEEEEEeeecc
Q 037555 225 VIELWSISVNR 235 (298)
Q Consensus 225 ~i~vwd~~~~~ 235 (298)
.|+.||.++++
T Consensus 141 ~v~a~d~~tG~ 151 (369)
T 2hz6_A 141 TITMYDTKTRE 151 (369)
T ss_dssp EEECCCSSSSS
T ss_pred EEEEEECCCCC
Confidence 99999998873
No 225
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.01 E-value=1.3e-07 Score=71.88 Aligned_cols=194 Identities=11% Similarity=0.113 Sum_probs=121.1
Q ss_pred eEEeccCCCc--eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEE--EEEEcCCCCEEEEE-eC
Q 037555 49 SHKLYGHGNE--LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVT--QIRFSHDDNLLLSV-SR 123 (298)
Q Consensus 49 ~~~~~~h~~~--v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~--~~~~~~~~~~l~~~-~~ 123 (298)
++++ .|... ...+.|+ ++.++.+++. .....|+++|+.+++.+..+.... ... .+++ +++.|... -.
T Consensus 34 v~~~-phd~~~ftqGL~~~-~~~LyestG~---~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~--~g~~ly~ltw~ 105 (262)
T 3nol_A 34 VHSY-PHDTKAFTEGFFYR-NGYFYESTGL---NGRSSIRKVDIESGKTLQQIELGK-RYFGEGISD--WKDKIVGLTWK 105 (262)
T ss_dssp EEEE-ECCTTCEEEEEEEE-TTEEEEEEEE---TTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEE--ETTEEEEEESS
T ss_pred EEEe-cCCCCcccceEEEE-CCEEEEECCC---CCCceEEEEECCCCcEEEEEecCC-ccceeEEEE--eCCEEEEEEee
Confidence 4444 45544 4788998 6666666643 224589999999999888765322 222 3444 34444444 45
Q ss_pred CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC-CCC-CceE
Q 037555 124 DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP-PFN-SSVT 201 (298)
Q Consensus 124 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~~-~~v~ 201 (298)
++.+.++|..+ .+.+.++.... ....+.+++..|+....++.|.++|..+.+....+..-. +.. ..++
T Consensus 106 ~~~v~v~D~~t-------~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lN 175 (262)
T 3nol_A 106 NGLGFVWNIRN-------LRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELN 175 (262)
T ss_dssp SSEEEEEETTT-------CCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEE
T ss_pred CCEEEEEECcc-------CcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccc
Confidence 89999999987 55666665432 222334567777777668889999999988777443211 111 2344
Q ss_pred EEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeecc--CC-------cccceEEEEEeecCC
Q 037555 202 ALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDP--FA-------CHVAAVNRMAWKTHE 272 (298)
Q Consensus 202 ~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~v~~~~~~~~~ 272 (298)
.+.|. ++ .+.+..-.+..|.+.|..++ +....+.- +. .-....+.|+|+|++
T Consensus 176 ELe~~-~G-----~lyan~w~~~~I~vIDp~tG-------------~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~ 236 (262)
T 3nol_A 176 ELEWV-DG-----EIFANVWQTNKIVRIDPETG-------------KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEH 236 (262)
T ss_dssp EEEEE-TT-----EEEEEETTSSEEEEECTTTC-------------BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTT
T ss_pred eeEEE-CC-----EEEEEEccCCeEEEEECCCC-------------cEEEEEECCcCccccccccCcCCceEEEEEcCCC
Confidence 57775 44 45555556889999999887 34333321 10 112467899999987
Q ss_pred CCCCCcceEEEee
Q 037555 273 KPKNSRTMQLASC 285 (298)
Q Consensus 273 ~~~~~~~~~l~s~ 285 (298)
+ .+++||
T Consensus 237 ~------~lfVTG 243 (262)
T 3nol_A 237 H------RLFVTG 243 (262)
T ss_dssp T------EEEEEE
T ss_pred C------EEEEEC
Confidence 3 555555
No 226
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.98 E-value=5.4e-08 Score=80.28 Aligned_cols=148 Identities=14% Similarity=0.124 Sum_probs=103.3
Q ss_pred CCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe----------CCCeEEEEEeccC
Q 037555 66 HQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS----------RDRQFSVFAIQRT 135 (298)
Q Consensus 66 ~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~ 135 (298)
++++.+++.........+.|.++|..+++.+.++.....+ .++++||+++++++. .++.|.++|..+
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t- 158 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT- 158 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC-
Confidence 5677666664310000179999999999999888755555 899999999888776 467899999887
Q ss_pred CCCccceeeeEEeecc-------CCceEEEEEccCCCEEEEeeC--CCeEEEEEccCCcceeeeeecCCCCCceEEEEEe
Q 037555 136 GTGEIDYQLIARQEAH-------KRIIWSCSWNPFGHEFATGSR--DKTVKIWAVENKSSVKQILALPPFNSSVTALSWV 206 (298)
Q Consensus 136 ~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~ 206 (298)
.+.+..+.-. ......+.|+|++++++++.. ++.|.+.|+.+.+....+. .. . +....
T Consensus 159 ------~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~-v~---g---~~~~~ 225 (426)
T 3c75_H 159 ------FLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLD-VP---D---CYHIF 225 (426)
T ss_dssp ------CCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE-CC---S---EEEEE
T ss_pred ------CcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEE-cC---C---ceeec
Confidence 4445444321 123457899999999999874 5789999999988877442 21 1 13445
Q ss_pred eccccCCccEEEEeecCCcEEEEEeee
Q 037555 207 GLDRQKNHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 207 ~~~~~~~~~~l~~g~~dg~i~vwd~~~ 233 (298)
|.+. ..+++.+.||.+.+.+...
T Consensus 226 p~g~----~~~v~~~~dG~~~~V~~~~ 248 (426)
T 3c75_H 226 PASP----TVFYMNCRDGSLARVDFAD 248 (426)
T ss_dssp EEET----TEEEEEETTSSEEEEECCT
T ss_pred cCCC----cEEEEEcCCCCEEEEECCC
Confidence 5543 4566677888888888843
No 227
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.97 E-value=3e-06 Score=65.76 Aligned_cols=197 Identities=8% Similarity=-0.023 Sum_probs=119.0
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEE-EEEeCCCeEEEEEeccC
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLL-LSVSRDRQFSVFAIQRT 135 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~ 135 (298)
..+..++|++++..|..+. ...+.|.+++.........+.........+++++++..| ++-...+.|.++++...
T Consensus 36 ~~~~gi~~d~~~~~ly~~d----~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTD----ISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEE----TTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEE----CCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC
Confidence 3578999999777666664 346899999987654333232222467899999975544 44455788999987632
Q ss_pred CCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC---CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccC
Q 037555 136 GTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR---DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQK 212 (298)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 212 (298)
. ...+ ..........++++|++..|+.+.. .+.|..+++.... ...+.. ........+++++++.
T Consensus 112 ~-----~~~~--~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~--~~~~~P~gia~d~~~~-- 179 (267)
T 1npe_A 112 Q-----RRVL--FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQ--DNLGLPNGLTFDAFSS-- 179 (267)
T ss_dssp S-----CEEE--ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEEC--TTCSCEEEEEEETTTT--
T ss_pred C-----EEEE--EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEE--CCCCCCcEEEEcCCCC--
Confidence 1 1111 1111245688999997666665553 3688888876433 221111 1234578999999762
Q ss_pred CccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEE
Q 037555 213 NHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVR 292 (298)
Q Consensus 213 ~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 292 (298)
.++++-...+.|.+++.... .....+. . ......++.. .+ .++++....+.|.
T Consensus 180 --~lyv~d~~~~~I~~~~~~g~-------------~~~~~~~---~-~~~P~gi~~d-~~-------~lyva~~~~~~v~ 232 (267)
T 1npe_A 180 --QLCWVDAGTHRAECLNPAQP-------------GRRKVLE---G-LQYPFAVTSY-GK-------NLYYTDWKTNSVI 232 (267)
T ss_dssp --EEEEEETTTTEEEEEETTEE-------------EEEEEEE---C-CCSEEEEEEE-TT-------EEEEEETTTTEEE
T ss_pred --EEEEEECCCCEEEEEecCCC-------------ceEEEec---C-CCCceEEEEe-CC-------EEEEEECCCCeEE
Confidence 44455556788999998653 2111111 1 1223455554 33 5666665667888
Q ss_pred EeEe
Q 037555 293 VFQV 296 (298)
Q Consensus 293 iw~~ 296 (298)
.+|.
T Consensus 233 ~~d~ 236 (267)
T 1npe_A 233 AMDL 236 (267)
T ss_dssp EEET
T ss_pred EEeC
Confidence 7775
No 228
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.96 E-value=5.4e-08 Score=78.91 Aligned_cols=219 Identities=5% Similarity=-0.058 Sum_probs=125.6
Q ss_pred CCceEEeccCCCceEEEEEcCCCCEEEeEecc-----CCCCceEEEEEEcCCceeeeccccc-------cccEEEEEEcC
Q 037555 46 WPESHKLYGHGNELFSLCCDHQGKLVASSCKA-----QSTAAAEIWLWEVGSWKAMGRLQSH-------SLTVTQIRFSH 113 (298)
Q Consensus 46 ~~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~~-----~~~~d~~i~vw~~~~~~~~~~~~~~-------~~~v~~~~~~~ 113 (298)
+..+.++..-..+ .+.++|++++++++... ++..++.|.+||+.+++.+..+... ......++++|
T Consensus 56 ~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~Sp 133 (368)
T 1mda_H 56 GVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA 133 (368)
T ss_dssp TEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT
T ss_pred CeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcC
Confidence 3455666544556 79999999999888521 0013689999999999998887533 12356799999
Q ss_pred CCCEEEEEeC--CCeEEE--EEeccCCCCccceeeeEEeec---------cCCceEEEE---------------------
Q 037555 114 DDNLLLSVSR--DRQFSV--FAIQRTGTGEIDYQLIARQEA---------HKRIIWSCS--------------------- 159 (298)
Q Consensus 114 ~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~~~~---------~~~~v~~~~--------------------- 159 (298)
||++++++.. +..+.+ +|..+...-.. ......... ..+.+..+.
T Consensus 134 DGk~lyVan~~~~~~v~V~~iD~~tv~~i~v-~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~v 212 (368)
T 1mda_H 134 SSACLLFFLFGSSAAAGLSVPGASDDQLTKS-ASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNC 212 (368)
T ss_dssp TSSCEEEEECSSSCEEEEEETTTEEEEEEEC-SSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCB
T ss_pred CCCEEEEEccCCCCeEEEEEEchhhceEEEC-CCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeC
Confidence 9999998874 467888 88754000000 000000000 000000000
Q ss_pred -----EccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCC----------CCCceEEEEEeeccccCCccEEEEeec--
Q 037555 160 -----WNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPP----------FNSSVTALSWVGLDRQKNHGFLAVGME-- 222 (298)
Q Consensus 160 -----~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~~~~~~l~~g~~-- 222 (298)
..+++..++..+. +.|.+.|+....... +..+.. .......++++|++ ..++.+..
T Consensus 213 g~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v-~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg-----~~lyV~~~~~ 285 (368)
T 1mda_H 213 SSQAAQANYPGMLVWAVA-SSILQGDIPAAGATM-KAAIDGNESGRKADNFRSAGFQMVAKLKNT-----DGIMILTVEH 285 (368)
T ss_dssp CSCCEEETTTTEEEECBS-SCCEEEECCSSCCEE-ECCCCSSCTHHHHTTEEECSSSCEEEETTT-----TEEEEEEEEC
T ss_pred CCCccccccCCEEEEEcC-CEEEEEECCCCcceE-EEEEEeccccccccccccCcceeeEEcCCC-----CEEEEEeccc
Confidence 0333344444444 667777765422110 001110 01112226788887 45555432
Q ss_pred -------CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeee-CCCcEEEe
Q 037555 223 -------SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCG-ADNTVRVF 294 (298)
Q Consensus 223 -------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~iw 294 (298)
++.+.++|+.+. +.+..+. -......|+|+||++ .++++.. .++.|.++
T Consensus 286 ~~~~~~~~~~~~ViD~~t~-------------~vv~~i~----vg~~p~gi~~s~Dg~------~l~va~~~~~~~VsVI 342 (368)
T 1mda_H 286 SRSCLAAAENTSSVTASVG-------------QTSGPIS----NGHDSDAIIAAQDGA------SDNYANSAGTEVLDIY 342 (368)
T ss_dssp SSCTTSCEEEEEEEESSSC-------------CEEECCE----EEEEECEEEECCSSS------CEEEEEETTTTEEEEE
T ss_pred cCcccccCCCEEEEECCCC-------------eEEEEEE----CCCCcceEEECCCCC------EEEEEccCCCCeEEEE
Confidence 235669999876 4444432 223688999999983 4777777 69999999
Q ss_pred Eec
Q 037555 295 QVN 297 (298)
Q Consensus 295 ~~~ 297 (298)
|+.
T Consensus 343 D~~ 345 (368)
T 1mda_H 343 DAA 345 (368)
T ss_dssp ESS
T ss_pred ECC
Confidence 974
No 229
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.92 E-value=3.8e-06 Score=64.19 Aligned_cols=209 Identities=12% Similarity=0.135 Sum_probs=132.3
Q ss_pred EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc-cccccEEEEEEcCCCCEEEEEeCCCeEE
Q 037555 50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ-SHSLTVTQIRFSHDDNLLLSVSRDRQFS 128 (298)
Q Consensus 50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 128 (298)
+.+.+-...+..++|+|++..|++.. ..++.|...|.. ++.+..+. ........+++.+++.++++.-.++.+.
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~----d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~ 94 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTI----NKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIY 94 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEE----ETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEE----CCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEE
Confidence 46667777899999999877666654 348899999998 77776653 1224578889998887777766778999
Q ss_pred EEEeccCCCCccceeeeEEe------eccCCceEEEEEccCCCEEEEeeCCCeEEEEEccC---Ccceeeeee----cCC
Q 037555 129 VFAIQRTGTGEIDYQLIARQ------EAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVEN---KSSVKQILA----LPP 195 (298)
Q Consensus 129 iwd~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~---~~~~~~~~~----~~~ 195 (298)
++++...... ...... ...+.....++|+|.++.|+++.......+|.++. ...+..+.. -..
T Consensus 95 ~~~v~~~~~i----~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~ 170 (255)
T 3qqz_A 95 VISLTPNSEV----KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQF 170 (255)
T ss_dssp EEEECTTCCE----EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTC
T ss_pred EEEcCCCCee----eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccc
Confidence 9988764320 111111 12345578999999987777776555555555541 111111100 011
Q ss_pred CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCC-cc------cceEEEEEe
Q 037555 196 FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFA-CH------VAAVNRMAW 268 (298)
Q Consensus 196 ~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~v~~~~~ 268 (298)
....+.+++++|... .+++....+..|.++|.... ....+. +. +. -..-..|+|
T Consensus 171 ~~~d~S~l~~dp~tg----~lliLS~~s~~L~~~d~~g~--------------~~~~~~-L~~g~~~l~~~~~qpEGia~ 231 (255)
T 3qqz_A 171 TLDDVSGAEFNQQKN----TLLVLSHESRALQEVTLVGE--------------VIGEMS-LTKGSRGLSHNIKQAEGVAM 231 (255)
T ss_dssp CSSCCCEEEEETTTT----EEEEEETTTTEEEEECTTCC--------------EEEEEE-CSTTGGGCSSCCCSEEEEEE
T ss_pred ccCCceeEEEcCCCC----eEEEEECCCCeEEEEcCCCC--------------EEEEEE-cCCccCCcccccCCCCeeEE
Confidence 234578999999763 67777777888888886532 222221 22 11 125678999
Q ss_pred ecCCCCCCCcceEEEeeeCCCcEEEe
Q 037555 269 KTHEKPKNSRTMQLASCGADNTVRVF 294 (298)
Q Consensus 269 ~~~~~~~~~~~~~l~s~~~d~~i~iw 294 (298)
.+++ +++++ ++-+.++.+
T Consensus 232 d~~G-------~lyIv-sE~n~~y~f 249 (255)
T 3qqz_A 232 DASG-------NIYIV-SEPNRFYRF 249 (255)
T ss_dssp CTTC-------CEEEE-ETTTEEEEE
T ss_pred CCCC-------CEEEE-cCCceEEEE
Confidence 9999 65555 555655544
No 230
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.90 E-value=5.1e-07 Score=74.06 Aligned_cols=162 Identities=14% Similarity=0.214 Sum_probs=105.9
Q ss_pred ceEEEEEcCCCCEEEeEecc-CCCCceEEEEEEcCCceeeeccccc--c-ccEEEEEEcCCCCEEEEEe-----------
Q 037555 58 ELFSLCCDHQGKLVASSCKA-QSTAAAEIWLWEVGSWKAMGRLQSH--S-LTVTQIRFSHDDNLLLSVS----------- 122 (298)
Q Consensus 58 ~v~~~~~s~~~~~l~~~~~~-~~~~d~~i~vw~~~~~~~~~~~~~~--~-~~v~~~~~~~~~~~l~~~~----------- 122 (298)
....+.+.|+| +++++..+ .+...+.|.++|..+.+.+.++... . ..-..+.|+|+++.+++..
T Consensus 139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~ 217 (462)
T 2ece_A 139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGL 217 (462)
T ss_dssp EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCC
T ss_pred cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCcccccccc
Confidence 45567888999 66655331 1122378999999999988887622 1 2234688899999988885
Q ss_pred --------CCCeEEEEEeccCCCCccceeeeEEeecc--CCceEEEEE--ccCCCEEEEee------CCCeEEEEEccCC
Q 037555 123 --------RDRQFSVFAIQRTGTGEIDYQLIARQEAH--KRIIWSCSW--NPFGHEFATGS------RDKTVKIWAVENK 184 (298)
Q Consensus 123 --------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~--~~~~~~l~~~~------~dg~i~~wd~~~~ 184 (298)
....|.+||+.. .+.+..+... ......+.| +|++++++++. .+++|.+|....+
T Consensus 218 ~~~~~~~~~~d~V~v~D~~~-------~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g 290 (462)
T 2ece_A 218 KLEHLKDRYGNRIHFWDLRK-------RKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG 290 (462)
T ss_dssp CTTTHHHHSCCEEEEEETTT-------TEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT
T ss_pred chhhhhhccCCEEEEEECCC-------CcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC
Confidence 368999999986 3444444432 123445555 99998887776 4668877666542
Q ss_pred cceeeeee--cCC----------------CCCceEEEEEeeccccCCccEEEEee-cCCcEEEEEeee
Q 037555 185 SSVKQILA--LPP----------------FNSSVTALSWVGLDRQKNHGFLAVGM-ESGVIELWSISV 233 (298)
Q Consensus 185 ~~~~~~~~--~~~----------------~~~~v~~~~~~~~~~~~~~~~l~~g~-~dg~i~vwd~~~ 233 (298)
. ...... +.. .......+.+++++ ++|.++. ..+.|.+||+..
T Consensus 291 ~-~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DG-----rfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 291 K-WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDD-----KFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp E-EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTS-----CEEEEEETTTTEEEEEECSS
T ss_pred c-eeEEEEEeCCCccccccccccccccccCCCceeEEEECCCC-----CEEEEEeCCCCEEEEEEecC
Confidence 2 111111 110 02457889999999 5666665 468999999864
No 231
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.89 E-value=7.5e-07 Score=67.81 Aligned_cols=188 Identities=9% Similarity=0.003 Sum_probs=119.6
Q ss_pred cCCCc--eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccE--EEEEEcCCCCEEEEEeCCCeEEE
Q 037555 54 GHGNE--LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTV--TQIRFSHDDNLLLSVSRDRQFSV 129 (298)
Q Consensus 54 ~h~~~--v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~dg~i~i 129 (298)
.|... ...+.|+. +.++.+. +.++.|+++|+.+++.+..+ -. ... ..+++.. +++.+..-.++.+.+
T Consensus 50 phd~~~ftqGL~~~~-~~Ly~st-----G~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~g-~~Ly~ltw~~~~v~V 120 (268)
T 3nok_A 50 PHATNAFTQGLVFHQ-GHFFEST-----GHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASDG-ERLYQLTWTEGLLFT 120 (268)
T ss_dssp ECCTTCCEEEEEEET-TEEEEEE-----TTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEECS-SCEEEEESSSCEEEE
T ss_pred cCCCccccceEEEEC-CEEEEEc-----CCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEeC-CEEEEEEccCCEEEE
Confidence 45443 46888873 4455555 45778999999999988776 22 222 3355543 344555556899999
Q ss_pred EEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCC---ceEEEEEe
Q 037555 130 FAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNS---SVTALSWV 206 (298)
Q Consensus 130 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~---~v~~~~~~ 206 (298)
||..+ .+.+.++..... -..++ +++..|+.+..++.|.++|..+.+....+..- .... .++.+.|.
T Consensus 121 ~D~~T-------l~~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~-~~g~~v~~lNeLe~~ 189 (268)
T 3nok_A 121 WSGMP-------PQRERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVK-LRGQPVELINELECA 189 (268)
T ss_dssp EETTT-------TEEEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECE-ETTEECCCEEEEEEE
T ss_pred EECCc-------CcEEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeC-CCCcccccccccEEe
Confidence 99987 566666654322 23444 56777777777899999999998877744321 1222 34566766
Q ss_pred eccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeecc--C--------CcccceEEEEEeecCCCCCC
Q 037555 207 GLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDP--F--------ACHVAAVNRMAWKTHEKPKN 276 (298)
Q Consensus 207 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~v~~~~~~~~~~~~~ 276 (298)
++ .+.+....+..|.+.|..++ +.+..+.- + ..-....+.|+++|+++
T Consensus 190 -dG-----~lyanvw~s~~I~vIDp~TG-------------~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~--- 247 (268)
T 3nok_A 190 -NG-----VIYANIWHSSDVLEIDPATG-------------TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSG--- 247 (268)
T ss_dssp -TT-----EEEEEETTCSEEEEECTTTC-------------BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTC---
T ss_pred -CC-----EEEEEECCCCeEEEEeCCCC-------------cEEEEEECCCCcccccccccCcCCceEEEEEcCCCC---
Confidence 44 45554446789999999887 44333321 0 11234678999999873
Q ss_pred CcceEEEeee
Q 037555 277 SRTMQLASCG 286 (298)
Q Consensus 277 ~~~~~l~s~~ 286 (298)
++++||-
T Consensus 248 ---rlfVTGK 254 (268)
T 3nok_A 248 ---RIFMTGK 254 (268)
T ss_dssp ---CEEEEET
T ss_pred ---EEEEeCC
Confidence 6666663
No 232
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.89 E-value=1.2e-06 Score=66.14 Aligned_cols=192 Identities=14% Similarity=0.114 Sum_probs=119.0
Q ss_pred cCCC--ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccccccc-EEEEEEcCCCCEEEEEeCCCeEEEE
Q 037555 54 GHGN--ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLT-VTQIRFSHDDNLLLSVSRDRQFSVF 130 (298)
Q Consensus 54 ~h~~--~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~iw 130 (298)
.|.. -...+.|++ +.++.+.+. .....|+++|+.+++.+..+...... -..+++. .+++....-.++.+.+|
T Consensus 16 phd~~~ftqGL~~~~-~~LyestG~---~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~ 90 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLR-GHLYESTGE---TGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVY 90 (243)
T ss_dssp ECCTTCCEEEEEEET-TEEEEEECC---TTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEE
T ss_pred CCCCccccccEEEEC-CEEEEECCC---CCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEE
Confidence 4554 366899986 555555543 22468999999999988776532221 1233443 23344445568999999
Q ss_pred EeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCC---CceEEEEEee
Q 037555 131 AIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFN---SSVTALSWVG 207 (298)
Q Consensus 131 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~---~~v~~~~~~~ 207 (298)
|..+ .+.+.++...... ..++ +++..|+.+..++.|.++|..+.+....+..- .+. ..++.+.+.
T Consensus 91 D~~t-------l~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~-~~g~~~~~lNeLe~~- 158 (243)
T 3mbr_X 91 DLAT-------LTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVT-AGGRPLDNLNELEWV- 158 (243)
T ss_dssp ETTT-------TEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECE-ETTEECCCEEEEEEE-
T ss_pred ECCc-------CcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEc-cCCcccccceeeEEe-
Confidence 9987 5666666643322 3444 55666666667889999999998877644321 122 234556655
Q ss_pred ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeecc--C--------CcccceEEEEEeecCCCCCCC
Q 037555 208 LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDP--F--------ACHVAAVNRMAWKTHEKPKNS 277 (298)
Q Consensus 208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~v~~~~~~~~~~~~~~ 277 (298)
++ .+.+..-.+..|.+.|..++ +.+..+.- + ..-....+.|+++|++.
T Consensus 159 ~G-----~lyanvw~s~~I~vIDp~tG-------------~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~---- 216 (243)
T 3mbr_X 159 NG-----ELLANVWLTSRIARIDPASG-------------KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD---- 216 (243)
T ss_dssp TT-----EEEEEETTTTEEEEECTTTC-------------BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT----
T ss_pred CC-----EEEEEECCCCeEEEEECCCC-------------CEEEEEECCcCccccccccCCcCCceEEEEEcCCCC----
Confidence 33 44444446788999999887 33333321 1 01234678999999873
Q ss_pred cceEEEeee
Q 037555 278 RTMQLASCG 286 (298)
Q Consensus 278 ~~~~l~s~~ 286 (298)
++++||-
T Consensus 217 --~lfVTGK 223 (243)
T 3mbr_X 217 --RLFVTGK 223 (243)
T ss_dssp --EEEEEET
T ss_pred --EEEEECC
Confidence 5666653
No 233
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.89 E-value=8.8e-07 Score=79.13 Aligned_cols=166 Identities=12% Similarity=0.060 Sum_probs=96.8
Q ss_pred cCCC-ceEEEEEc-CCCCEEEeEeccCCCCceEEEEEEcCCc-eeeeccccccccEEEEEEcCCCCEEEEEeCC-----C
Q 037555 54 GHGN-ELFSLCCD-HQGKLVASSCKAQSTAAAEIWLWEVGSW-KAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD-----R 125 (298)
Q Consensus 54 ~h~~-~v~~~~~s-~~~~~l~~~~~~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g 125 (298)
+|.. .+...+|| |||++||.+....+.+...|+++|+.++ +.+... -......+.|+||++.|+....+ .
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~--~~~~~~~~~WspDg~~l~y~~~d~~~~~~ 247 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADK--VSGTNGEIVWGPDHTSLFYVTKDETLREN 247 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCC--EEEECSCCEECSSTTEEEEEEECTTCCEE
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcc--ccCceeeEEEecCCCEEEEEEECCCCCCC
Confidence 3443 67889999 9999998775432233457999999988 632210 11223568899999877776654 2
Q ss_pred eEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC---CCeEEEEEccCCc-ce--eeeeecCCCCCc
Q 037555 126 QFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR---DKTVKIWAVENKS-SV--KQILALPPFNSS 199 (298)
Q Consensus 126 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~~wd~~~~~-~~--~~~~~~~~~~~~ 199 (298)
.|.++++.+.... ...+.. .........+.|+|++++|+..+. ...|.++|+.++. .. .. ........
T Consensus 248 ~v~~~~lgt~~~~---~~lv~~-~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~--l~~~~~~~ 321 (751)
T 2xe4_A 248 KVWRHVMGKLQSE---DVCLYE-EHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEI--VRPREKGV 321 (751)
T ss_dssp EEEEEETTSCGGG---CEEEEE-CCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEE--SSCCCTTC
T ss_pred EEEEEECCCCchh---cEEEEe-cCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEE--eecCCCCc
Confidence 5666676543210 111211 122344567899999998877653 3468888988752 12 21 12223344
Q ss_pred eEEEEEeeccccCCccEEEEeecC--C--cEEEEEee
Q 037555 200 VTALSWVGLDRQKNHGFLAVGMES--G--VIELWSIS 232 (298)
Q Consensus 200 v~~~~~~~~~~~~~~~~l~~g~~d--g--~i~vwd~~ 232 (298)
..++.|+..+ .+++....+ + .|..+++.
T Consensus 322 ~~s~~~~~g~-----~l~~~t~~~~a~~~~L~~~d~~ 353 (751)
T 2xe4_A 322 RYDVQMHGTS-----HLVILTNEGGAVNHKLLIAPRG 353 (751)
T ss_dssp CEEEEEETTT-----EEEEEECTTTCTTCEEEEEETT
T ss_pred eEEEeeeeCC-----EEEEEeCCCCCCCcEEEEEcCC
Confidence 5555554433 455555444 3 44455543
No 234
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.88 E-value=1.9e-07 Score=79.19 Aligned_cols=200 Identities=11% Similarity=0.060 Sum_probs=131.1
Q ss_pred CCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc-ccccEEEEEE-c-CCCCEEEEEe------------------CC
Q 037555 66 HQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS-HSLTVTQIRF-S-HDDNLLLSVS------------------RD 124 (298)
Q Consensus 66 ~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~-~-~~~~~l~~~~------------------~d 124 (298)
+||++|..... .+..|.+.|+.+.+....+.- .......+++ + |++.++++++ .+
T Consensus 99 ~DG~~lfVnd~----~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~ 174 (595)
T 1fwx_A 99 YDGRFLFMNDK----ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYV 174 (595)
T ss_dssp EEEEEEEEEET----TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEE
T ss_pred cCCCEEEEEcC----CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccC
Confidence 48888888764 477899999999987774432 2245778887 5 8999988885 24
Q ss_pred CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCC------------------------------
Q 037555 125 RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDK------------------------------ 174 (298)
Q Consensus 125 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------------------------------ 174 (298)
+.+.+.|..+ .+...++.-.. ....++++|+++++++.+.+.
T Consensus 175 ~~vtvID~~t-------~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~ 246 (595)
T 1fwx_A 175 NVFTAVDADK-------WEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA 246 (595)
T ss_dssp EEEEEEETTT-------TEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred ceEEEEECCC-------CeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEecc
Confidence 5788888876 44455444222 346678999999988887543
Q ss_pred --------eEEEEEccC--Ccc-eeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCC
Q 037555 175 --------TVKIWAVEN--KSS-VKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPA 243 (298)
Q Consensus 175 --------~i~~wd~~~--~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 243 (298)
.|.+.|.++ ++. +. .++ ......++.++|++. .+++++..+..|.++|+.+......-..
T Consensus 247 ~Gk~~~i~~V~VID~~~~~~~~~~~---~Ip-vg~~PhGv~~sPDGk----~v~V~~~~s~~VsVid~~~~~~~~~~~l- 317 (595)
T 1fwx_A 247 AGDYQELNGVKVVDGRKEASSLFTR---YIP-IANNPHGCNMAPDKK----HLCVAGKLSPTVTVLDVTRFDAVFYENA- 317 (595)
T ss_dssp HTCSEEETTEEEEECSGGGCCSSEE---EEE-EESSCCCEEECTTSS----EEEEECTTSSBEEEEEGGGHHHHHHSCC-
T ss_pred CCCeeEECcEEEEeCcccCCceeEE---EEe-cCCCceEEEEcCCCC----EEEEeCCCCCeEEEEECccccccccccc-
Confidence 366666665 322 22 222 223457899999994 4555555788999999986421000000
Q ss_pred CCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 244 PSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.........+ .-......++|+|++ ...++.-.|+.|.+||++
T Consensus 318 ~~~~~v~~~v----~vG~gP~h~aF~~dG-------~aY~t~~ldsqV~kwdi~ 360 (595)
T 1fwx_A 318 DPRSAVVAEP----ELGLGPLHTAFDGRG-------NAYTSLFLDSQVVKWNIE 360 (595)
T ss_dssp CGGGGEEECC----BCCSCEEEEEECTTS-------EEEEEETTTTEEEEEEHH
T ss_pred CcccceEEEc----CCCCCcceEEECCCC-------eEEEEEecCCcEEEEEhh
Confidence 0000111222 134567889999999 888888899999999974
No 235
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.75 E-value=1.1e-06 Score=77.56 Aligned_cols=182 Identities=10% Similarity=0.046 Sum_probs=115.3
Q ss_pred EEEEEcCCCCEEEeEeccCCC----------Cc----eEEEEEEcCCceeeecccc--cc-------ccEEEEEEcCCC-
Q 037555 60 FSLCCDHQGKLVASSCKAQST----------AA----AEIWLWEVGSWKAMGRLQS--HS-------LTVTQIRFSHDD- 115 (298)
Q Consensus 60 ~~~~~s~~~~~l~~~~~~~~~----------~d----~~i~vw~~~~~~~~~~~~~--~~-------~~v~~~~~~~~~- 115 (298)
..++++|++..++.+..+... .+ +.|..+|..+++.+-.++. |. .....+....+|
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~ 325 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK 325 (677)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence 367888988888877431100 00 2599999999988766542 21 122223333467
Q ss_pred --CEEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc-----------CCce------------------------EEE
Q 037555 116 --NLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH-----------KRII------------------------WSC 158 (298)
Q Consensus 116 --~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-----------~~~v------------------------~~~ 158 (298)
..++.++.+|.++++|..+++ ++...... ..++ ..+
T Consensus 326 ~~~~l~~~~~~G~l~~lD~~tG~-------~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~ 398 (677)
T 1kb0_A 326 PRKVILHAPKNGFFFVLDRTNGK-------FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPM 398 (677)
T ss_dssp EEEEEEECCTTSEEEEEETTTCC-------EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCC
T ss_pred EeeEEEEECCCCEEEEEECCCCC-------EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCc
Confidence 678999999999999988743 22222110 0111 146
Q ss_pred EEccCCCEEEEeeC-------------------------------------------CCeEEEEEccCCcceeeeeecCC
Q 037555 159 SWNPFGHEFATGSR-------------------------------------------DKTVKIWAVENKSSVKQILALPP 195 (298)
Q Consensus 159 ~~~~~~~~l~~~~~-------------------------------------------dg~i~~wd~~~~~~~~~~~~~~~ 195 (298)
+++|+..++++... .|.|..||+.+++......
T Consensus 399 a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~---- 474 (677)
T 1kb0_A 399 SFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE---- 474 (677)
T ss_dssp EEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE----
T ss_pred eEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC----
Confidence 78888888877543 2789999999988776432
Q ss_pred CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCC
Q 037555 196 FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHE 272 (298)
Q Consensus 196 ~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 272 (298)
+..++....+...+ .+++.++.||.+++||.+++ +.+..+.. ++...-.-+.+..++
T Consensus 475 ~~~~~~~g~~~~~g-----~~v~~g~~dg~l~a~D~~tG-------------~~lw~~~~--~~~~~~~p~~y~~~G 531 (677)
T 1kb0_A 475 HVSPWNGGTLTTAG-----NVVFQGTADGRLVAYHAATG-------------EKLWEAPT--GTGVVAAPSTYMVDG 531 (677)
T ss_dssp ESSSCCCCEEEETT-----TEEEEECTTSEEEEEETTTC-------------CEEEEEEC--SSCCCSCCEEEEETT
T ss_pred CCCCCcCcceEeCC-----CEEEEECCCCcEEEEECCCC-------------ceeeeeeC--CCCcccCCEEEEeCC
Confidence 23344455566666 68888999999999999988 55555542 122222335566777
No 236
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.74 E-value=1.1e-06 Score=77.74 Aligned_cols=176 Identities=10% Similarity=0.080 Sum_probs=111.7
Q ss_pred EEEEcCCCCEEEeEeccCCCCce-------------------EEEEEEcCCceeeecccc--cc-------ccEEEEEEc
Q 037555 61 SLCCDHQGKLVASSCKAQSTAAA-------------------EIWLWEVGSWKAMGRLQS--HS-------LTVTQIRFS 112 (298)
Q Consensus 61 ~~~~s~~~~~l~~~~~~~~~~d~-------------------~i~vw~~~~~~~~~~~~~--~~-------~~v~~~~~~ 112 (298)
.++++|++.+++.+.. ++ .|..+|..+|+.+-.++. |. ..+......
T Consensus 239 ~~~~d~~~~~vy~~~~-----~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~ 313 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVG-----NGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELP 313 (689)
T ss_dssp CEEEETTTTEEEEECC-----CEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE
T ss_pred ceeEcCCCCEEEEeCC-----CCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeec
Confidence 6788898888888843 44 499999999998866553 21 122222222
Q ss_pred CCCC---EEEEEeCCCeEEEEEeccCCCCccceeeeEEeec----------------------------cCC--------
Q 037555 113 HDDN---LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEA----------------------------HKR-------- 153 (298)
Q Consensus 113 ~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----------------------------~~~-------- 153 (298)
.+|+ .++.++.+|.++++|..+++. +..... ...
T Consensus 314 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~-------l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~ 386 (689)
T 1yiq_A 314 IDGKPRKVLMQAPKNGFFYVIDRATGEL-------LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFW 386 (689)
T ss_dssp ETTEEEEEEEECCTTSEEEEEETTTCCE-------EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTT
T ss_pred cCCcEEEEEEEECCCCeEEEEECCCCCE-------eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcc
Confidence 3554 788899999999999887432 211000 000
Q ss_pred ---ceEEEEEccCCCEEEEeeC---------------------------------------------CCeEEEEEccCCc
Q 037555 154 ---IIWSCSWNPFGHEFATGSR---------------------------------------------DKTVKIWAVENKS 185 (298)
Q Consensus 154 ---~v~~~~~~~~~~~l~~~~~---------------------------------------------dg~i~~wd~~~~~ 185 (298)
.-..++++|+..++++... +|.|+.||+.+++
T Consensus 387 Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~ 466 (689)
T 1yiq_A 387 GAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ 466 (689)
T ss_dssp CSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE
T ss_pred cccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC
Confidence 0112678888777776532 3779999999998
Q ss_pred ceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEE
Q 037555 186 SVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNR 265 (298)
Q Consensus 186 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 265 (298)
....... ..+.....+...+ .+++.|+.||.|+.||.+++ +.+..+.. ++...-.-
T Consensus 467 ~~W~~~~----~~~~~~g~~~tag-----glvf~gt~dg~l~a~D~~tG-------------~~lw~~~~--~~~~~~~p 522 (689)
T 1yiq_A 467 AAWEVPY----VTIFNGGTLSTAG-----NLVFEGSADGRVIAYAADTG-------------EKLWEQPA--ASGVMAAP 522 (689)
T ss_dssp EEEEEEE----SSSCCCCEEEETT-----TEEEEECTTSEEEEEETTTC-------------CEEEEEEC--SSCCCSCC
T ss_pred eEeEccC----CCCccCccceECC-----CEEEEECCCCcEEEEECCCC-------------ccceeeeC--CCCcccCc
Confidence 7764322 2233334555555 68999999999999999998 55555432 11111223
Q ss_pred EEeecCC
Q 037555 266 MAWKTHE 272 (298)
Q Consensus 266 ~~~~~~~ 272 (298)
+.|..++
T Consensus 523 ~ty~~~G 529 (689)
T 1yiq_A 523 VTYSVDG 529 (689)
T ss_dssp EEEEETT
T ss_pred eEEEECC
Confidence 5667887
No 237
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.71 E-value=2.3e-05 Score=60.65 Aligned_cols=185 Identities=6% Similarity=-0.041 Sum_probs=109.3
Q ss_pred CEEEeEeccCCCCceEEEEEEcCCceee-----eccccccccEEEEEEcCCCCEEE-EEeCCCeEEEEEeccCCCCccce
Q 037555 69 KLVASSCKAQSTAAAEIWLWEVGSWKAM-----GRLQSHSLTVTQIRFSHDDNLLL-SVSRDRQFSVFAIQRTGTGEIDY 142 (298)
Q Consensus 69 ~~l~~~~~~~~~~d~~i~vw~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~ 142 (298)
++|..+. .+.|+.++++..... ..+......+..++|++++..|+ +-..++.|..+++....
T Consensus 2 ~~l~~~~------~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~------ 69 (267)
T 1npe_A 2 THLLFAQ------TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE------ 69 (267)
T ss_dssp EEEEEEE------EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC------
T ss_pred cEEEEEc------CCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC------
Confidence 4555552 357888988754321 11222234578999999665554 44557899999986421
Q ss_pred eeeEEeeccCCceEEEEEccCCCEEEEe-eCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee
Q 037555 143 QLIARQEAHKRIIWSCSWNPFGHEFATG-SRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM 221 (298)
Q Consensus 143 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~ 221 (298)
..............+++++++..|+.+ ...+.|.++++..... ..+ ..........++++|++ ..|..+.
T Consensus 70 -~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~--~~~~~~~P~~i~vd~~~-----g~lyv~~ 140 (267)
T 1npe_A 70 -PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVL--FDTGLVNPRGIVTDPVR-----GNLYWTD 140 (267)
T ss_dssp -CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE--ECSSCSSEEEEEEETTT-----TEEEEEE
T ss_pred -cEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EEE--EECCCCCccEEEEeeCC-----CEEEEEE
Confidence 111222222457899999976655555 4567899999875432 211 11122456899999965 3444443
Q ss_pred c---CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 222 E---SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 222 ~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
. .+.|..+++.... ...+.. ........+++++++. .++++....+.|..+++
T Consensus 141 ~~~~~~~I~~~~~dg~~--------------~~~~~~--~~~~~P~gia~d~~~~------~lyv~d~~~~~I~~~~~ 196 (267)
T 1npe_A 141 WNRDNPKIETSHMDGTN--------------RRILAQ--DNLGLPNGLTFDAFSS------QLCWVDAGTHRAECLNP 196 (267)
T ss_dssp CCSSSCEEEEEETTSCC--------------CEEEEC--TTCSCEEEEEEETTTT------EEEEEETTTTEEEEEET
T ss_pred CCCCCcEEEEEecCCCC--------------cEEEEE--CCCCCCcEEEEcCCCC------EEEEEECCCCEEEEEec
Confidence 3 3678777765321 111110 1224578899999762 55566666788888875
No 238
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.63 E-value=1.5e-06 Score=73.77 Aligned_cols=164 Identities=10% Similarity=0.096 Sum_probs=110.8
Q ss_pred CceEEEEE-c-CCCCEEEeEeccC-------------CCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEE
Q 037555 57 NELFSLCC-D-HQGKLVASSCKAQ-------------STAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSV 121 (298)
Q Consensus 57 ~~v~~~~~-s-~~~~~l~~~~~~~-------------~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 121 (298)
..+..+++ + |++.++++++... ...++.+.+.|..+.+.+.++.-.. ....++++|+|+++++.
T Consensus 134 ~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt 212 (595)
T 1fwx_A 134 KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFST 212 (595)
T ss_dssp CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEE
T ss_pred CCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEE
Confidence 45788888 5 8999998885211 1346799999999998887766322 34668899999999888
Q ss_pred eCCC---------------e-----------------------EEEEEeccCCCCccceee-eEEeeccCCceEEEEEcc
Q 037555 122 SRDR---------------Q-----------------------FSVFAIQRTGTGEIDYQL-IARQEAHKRIIWSCSWNP 162 (298)
Q Consensus 122 ~~dg---------------~-----------------------i~iwd~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~ 162 (298)
+.+. . |.+.|..+.. ... +..+. ......++.++|
T Consensus 213 ~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~-----~~~~~~~Ip-vg~~PhGv~~sP 286 (595)
T 1fwx_A 213 SYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEA-----SSLFTRYIP-IANNPHGCNMAP 286 (595)
T ss_dssp ESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGG-----CCSSEEEEE-EESSCCCEEECT
T ss_pred ecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccC-----CceeEEEEe-cCCCceEEEEcC
Confidence 8653 2 4444443310 011 12222 123456799999
Q ss_pred CCCEEEEee-CCCeEEEEEccCCcce---------eeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEee
Q 037555 163 FGHEFATGS-RDKTVKIWAVENKSSV---------KQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSIS 232 (298)
Q Consensus 163 ~~~~l~~~~-~dg~i~~wd~~~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~ 232 (298)
||+++++++ .+.+|.++|+.+.+.. ...... ........++|+|++ ...++...|+.|.+||+.
T Consensus 287 DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG-----~aY~t~~ldsqV~kwdi~ 360 (595)
T 1fwx_A 287 DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRG-----NAYTSLFLDSQVVKWNIE 360 (595)
T ss_dssp TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTS-----EEEEEETTTTEEEEEEHH
T ss_pred CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcceEEECCCC-----eEEEEEecCCcEEEEEhh
Confidence 999877766 5789999999965310 011122 244568899999998 566677789999999997
Q ss_pred e
Q 037555 233 V 233 (298)
Q Consensus 233 ~ 233 (298)
.
T Consensus 361 ~ 361 (595)
T 1fwx_A 361 D 361 (595)
T ss_dssp H
T ss_pred H
Confidence 6
No 239
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.58 E-value=3.7e-06 Score=74.12 Aligned_cols=102 Identities=7% Similarity=-0.021 Sum_probs=66.8
Q ss_pred ceEEEEEEcCCceeeeccccccc--------------------------------cEEEEEEcCCCCEEEEEeCCC----
Q 037555 82 AAEIWLWEVGSWKAMGRLQSHSL--------------------------------TVTQIRFSHDDNLLLSVSRDR---- 125 (298)
Q Consensus 82 d~~i~vw~~~~~~~~~~~~~~~~--------------------------------~v~~~~~~~~~~~l~~~~~dg---- 125 (298)
++.|+.+|..+++.+-.+..... ....++++|++.+++.++.++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~ 268 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS 268 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence 68999999999988755432111 113567888888888877664
Q ss_pred ---------------eEEEEEeccCCCCccceeeeEEee--ccC-------CceEEEEEccCC---CEEEEeeCCCeEEE
Q 037555 126 ---------------QFSVFAIQRTGTGEIDYQLIARQE--AHK-------RIIWSCSWNPFG---HEFATGSRDKTVKI 178 (298)
Q Consensus 126 ---------------~i~iwd~~~~~~~~~~~~~~~~~~--~~~-------~~v~~~~~~~~~---~~l~~~~~dg~i~~ 178 (298)
.|..+|..++ +.+-.+. .|. ....-+....++ ..++.++.+|.|++
T Consensus 269 ~~~~~~~~gd~~~~~sv~AlD~~TG-------~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~ 341 (677)
T 1kb0_A 269 HKVRSPKGGDNLYLASIVALDPDTG-------KYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFV 341 (677)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTC-------CEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEE
T ss_pred CCCCCccCCCCeeeEEEEEEECCCC-------CEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEE
Confidence 4777887763 2222222 121 112223333466 67899999999999
Q ss_pred EEccCCcceeee
Q 037555 179 WAVENKSSVKQI 190 (298)
Q Consensus 179 wd~~~~~~~~~~ 190 (298)
+|.++++.+...
T Consensus 342 lD~~tG~~l~~~ 353 (677)
T 1kb0_A 342 LDRTNGKFISAK 353 (677)
T ss_dssp EETTTCCEEEEE
T ss_pred EECCCCCEeccc
Confidence 999999887643
No 240
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.58 E-value=1.3e-06 Score=69.75 Aligned_cols=188 Identities=6% Similarity=-0.059 Sum_probs=114.7
Q ss_pred CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEecc
Q 037555 55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQR 134 (298)
Q Consensus 55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 134 (298)
+...+.++...+++.+++ + ..++.|..+|.. ++....+......+.++...+++.+++.. +.|..+| ..
T Consensus 135 ~~~~~~~~~~~~~g~l~v-g-----t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~ 203 (330)
T 3hxj_A 135 KKAIYATPIVSEDGTIYV-G-----SNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PD 203 (330)
T ss_dssp SSCCCSCCEECTTSCEEE-E-----CTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TT
T ss_pred CCceeeeeEEcCCCEEEE-E-----cCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CC
Confidence 333455566666676444 4 236889999988 77665555445566777777777755544 7788888 43
Q ss_pred CCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCc
Q 037555 135 TGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNH 214 (298)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (298)
.............+.++...+++. +..++.++.|..+|. +++..... ......+.++...+++
T Consensus 204 -------g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~---~~~~~~~~~~~~~~~g----- 266 (330)
T 3hxj_A 204 -------GTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRF---KTGKRIESSPVIGNTD----- 266 (330)
T ss_dssp -------SCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEE---ECSSCCCSCCEECTTS-----
T ss_pred -------CcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEe---eCCCCccccceEcCCC-----
Confidence 223333333445677788887765 555677788888875 34444322 2222333345554443
Q ss_pred cEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEe
Q 037555 215 GFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVF 294 (298)
Q Consensus 215 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 294 (298)
.|..++.+|.|..+|. ++ +....+. .....+.++...+++ .|..++.+|.+++.
T Consensus 267 -~l~v~t~~ggl~~~d~-~g-------------~~~~~~~---~~~~~~~~~~~d~~g--------~l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 267 -TIYFGSYDGHLYAINP-DG-------------TEKWNFE---TGSWIIATPVIDENG--------TIYFGTRNGKFYAL 320 (330)
T ss_dssp -CEEEECTTCEEEEECT-TS-------------CEEEEEE---CSSCCCSCCEECTTC--------CEEEECTTSCEEEE
T ss_pred -eEEEecCCCCEEEECC-CC-------------cEEEEEE---cCCccccceEEcCCC--------EEEEEcCCCeEEEE
Confidence 5777888888999985 33 2222222 123456666776776 46668889999887
Q ss_pred Ee
Q 037555 295 QV 296 (298)
Q Consensus 295 ~~ 296 (298)
..
T Consensus 321 ~~ 322 (330)
T 3hxj_A 321 FN 322 (330)
T ss_dssp EC
T ss_pred ec
Confidence 64
No 241
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.56 E-value=5.5e-06 Score=73.18 Aligned_cols=101 Identities=6% Similarity=0.010 Sum_probs=66.3
Q ss_pred CceEEEEEEcCCceeeeccccc-------------------------------cccEEEEEEcCCCCEEEEEeCCCe---
Q 037555 81 AAAEIWLWEVGSWKAMGRLQSH-------------------------------SLTVTQIRFSHDDNLLLSVSRDRQ--- 126 (298)
Q Consensus 81 ~d~~i~vw~~~~~~~~~~~~~~-------------------------------~~~v~~~~~~~~~~~l~~~~~dg~--- 126 (298)
.++.|+.||..+|+.+-.+... ...-..++++|+..+++.++.++.
T Consensus 181 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~ 260 (689)
T 1yiq_A 181 VRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWD 260 (689)
T ss_dssp CBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccc
Confidence 3789999999999877554310 001125778888888888887764
Q ss_pred ----------------EEEEEeccCCCCccceeeeEEeec--cC-------CceEEEEEccCCC---EEEEeeCCCeEEE
Q 037555 127 ----------------FSVFAIQRTGTGEIDYQLIARQEA--HK-------RIIWSCSWNPFGH---EFATGSRDKTVKI 178 (298)
Q Consensus 127 ----------------i~iwd~~~~~~~~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~~~~~dg~i~~ 178 (298)
|..+|..+++ .+-.+.. |. .+........++. .++.++.+|.+++
T Consensus 261 ~~~~~~~~gd~~y~~~v~AlD~~TG~-------~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~ 333 (689)
T 1yiq_A 261 PKWRSQAKGDNLFLSSIVAVNADTGE-------YVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYV 333 (689)
T ss_dssp HHHHHTTCSCCTTTTEEEEEETTTCC-------EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEE
T ss_pred cCCCCCCCCCceeeeeEEEEEccCCc-------eeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEE
Confidence 8889988743 3322221 21 1222222223454 7889999999999
Q ss_pred EEccCCccee
Q 037555 179 WAVENKSSVK 188 (298)
Q Consensus 179 wd~~~~~~~~ 188 (298)
+|.++++.+.
T Consensus 334 lD~~tG~~l~ 343 (689)
T 1yiq_A 334 IDRATGELLS 343 (689)
T ss_dssp EETTTCCEEE
T ss_pred EECCCCCEec
Confidence 9999998764
No 242
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.55 E-value=6.1e-05 Score=60.07 Aligned_cols=194 Identities=5% Similarity=-0.024 Sum_probs=112.7
Q ss_pred ceEEEEEcC-CCCEEEeEeccCCCCceEEEEEEcCCceeeeccc----c-ccccEEEEEEcC-CCCEEEEEeC-------
Q 037555 58 ELFSLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ----S-HSLTVTQIRFSH-DDNLLLSVSR------- 123 (298)
Q Consensus 58 ~v~~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~----~-~~~~v~~~~~~~-~~~~l~~~~~------- 123 (298)
.+..+++.+ ++.++++.. .+.|..+|..+++. ..+. + .......+++.+ +|++.++-..
T Consensus 81 ~p~gi~~~~~~g~l~v~d~------~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~ 153 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDC------YYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRG 153 (322)
T ss_dssp CEEEEEEETTTTEEEEEET------TTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTC
T ss_pred CCceEEEcCCCCcEEEEEC------CCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccc
Confidence 578999997 665555432 33488888775532 2221 1 113468899999 9987776432
Q ss_pred ----------CCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEe-eCCCeEEEEEccCCcc--eeee
Q 037555 124 ----------DRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATG-SRDKTVKIWAVENKSS--VKQI 190 (298)
Q Consensus 124 ----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~~~~--~~~~ 190 (298)
++.|..+|.... .. ..+...-.....++++|+++.|+++ +..+.|.+|++..... ...+
T Consensus 154 ~~~~~~~~~~~g~v~~~d~~~~-------~~-~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~ 225 (322)
T 2fp8_A 154 VQQIMDTSDKTGRLIKYDPSTK-------ET-TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVL 225 (322)
T ss_dssp HHHHHHHTCCCEEEEEEETTTT-------EE-EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEE
T ss_pred cceehcccCCCceEEEEeCCCC-------EE-EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceE
Confidence 366777776542 11 1111112334679999999876665 4568999999875321 1111
Q ss_pred eecCCCCCceEEEEEeeccccCCccEEEEeec----------CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcc-
Q 037555 191 LALPPFNSSVTALSWVGLDRQKNHGFLAVGME----------SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACH- 259 (298)
Q Consensus 191 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 259 (298)
..+ .. ...+++.+++ .+.++... .+.|..+|.. + +.+..+....+.
T Consensus 226 ~~~---~g-P~gi~~d~~G-----~l~va~~~~~~~~~~~~~~~~v~~~d~~-G-------------~~~~~~~~~~g~~ 282 (322)
T 2fp8_A 226 VKI---PN-PGNIKRNADG-----HFWVSSSEELDGNMHGRVDPKGIKFDEF-G-------------NILEVIPLPPPFA 282 (322)
T ss_dssp EEC---SS-EEEEEECTTS-----CEEEEEEEETTSSTTSCEEEEEEEECTT-S-------------CEEEEEECCTTTT
T ss_pred EeC---CC-CCCeEECCCC-----CEEEEecCcccccccCCCccEEEEECCC-C-------------CEEEEEECCCCCc
Confidence 122 23 6788888887 55555433 3556666643 2 333333321111
Q ss_pred cceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 260 VAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 260 ~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
...+..+++ .++ .++++....+.|..+++.
T Consensus 283 ~~~~~~~~~-~~g-------~L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 283 GEHFEQIQE-HDG-------LLYIGTLFHGSVGILVYD 312 (322)
T ss_dssp TSCCCEEEE-ETT-------EEEEECSSCSEEEEEEC-
T ss_pred cccceEEEE-eCC-------EEEEeecCCCceEEEecc
Confidence 234566666 455 677777778889888764
No 243
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.54 E-value=1.2e-08 Score=83.37 Aligned_cols=139 Identities=11% Similarity=0.105 Sum_probs=71.8
Q ss_pred CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeec
Q 037555 114 DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILAL 193 (298)
Q Consensus 114 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 193 (298)
++..+++++.||.|+.||..++ +.+-.+.. ..+.+..+..++..+++++.||.|+.||.++++.+. ..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG-------~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w---~~ 75 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTG-------SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLT---KL 75 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTC-------CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSE---EC
T ss_pred eCCEEEEEcCCCEEEEEECCCC-------CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceee---ee
Confidence 5778999999999999998873 34433333 344444455667778888899999999998887654 22
Q ss_pred CCCC-CceE-EEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecC
Q 037555 194 PPFN-SSVT-ALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTH 271 (298)
Q Consensus 194 ~~~~-~~v~-~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 271 (298)
..+. ..+. +..+. .+ ..+++++.++.|+.||..+++ ....+. .+. ...++|+
T Consensus 76 ~~~~~~~~~~sp~~~-~~-----~~v~~g~~dg~v~a~D~~tG~-------------~~w~~~---~~~----~~~~~p~ 129 (369)
T 2hz6_A 76 PFTIPELVQASPCRS-SD-----GILYMGKKQDIWYVIDLLTGE-------------KQQTLS---SAF----ADSLSPS 129 (369)
T ss_dssp SCCHHHHHTTCSCC-----------CCCCEEEEEEEEECCC---------------------------------------
T ss_pred eccCccccccCceEe-cC-----CEEEEEeCCCEEEEEECCCCc-------------EEEEec---CCC----ccccccc
Confidence 2111 1110 00111 12 467888889999999999873 332222 121 1334566
Q ss_pred CCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 272 EKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 272 ~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
+ ..+++++.|+.|+.||.+
T Consensus 130 ~-------~~v~~~~~dg~v~a~d~~ 148 (369)
T 2hz6_A 130 T-------SLLYLGRTEYTITMYDTK 148 (369)
T ss_dssp ----------EEEEEEEEEEECCCSS
T ss_pred C-------CEEEEEecCCEEEEEECC
Confidence 6 688888889999998863
No 244
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.53 E-value=4.1e-06 Score=64.40 Aligned_cols=148 Identities=8% Similarity=0.097 Sum_probs=102.9
Q ss_pred CCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEE
Q 037555 68 GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR 147 (298)
Q Consensus 68 ~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 147 (298)
+..|..+. ..++.+.++|..+.+.+.++...... ...+++|++.++++..++.|.++|..+ .+....
T Consensus 75 g~~lyv~t----~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t-------~~v~~~ 141 (266)
T 2iwa_A 75 NEKLYQVV----WLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHT-------FKLIKK 141 (266)
T ss_dssp TTEEEEEE----TTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTT-------CCEEEE
T ss_pred CCEEEEEE----ecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCC-------CcEEEE
Confidence 55666654 35889999999999988887532111 233556788777777789999999876 333444
Q ss_pred eecc-----CCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCC-----------CCCceEEEEEeecccc
Q 037555 148 QEAH-----KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPP-----------FNSSVTALSWVGLDRQ 211 (298)
Q Consensus 148 ~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~ 211 (298)
+.-. -..++.+.|. ++..++....++.|.+.|..+++....+. +.+ .......++|+|++.
T Consensus 142 I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~-~~g~~~~~~~~~~~~~~v~nGIa~~~~~~- 218 (266)
T 2iwa_A 142 HNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWIL-LPNLRKKLIDEGFRDIDVLNGIAWDQENK- 218 (266)
T ss_dssp EECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEE-CHHHHHHHHHTTCTTCCCEEEEEEETTTT-
T ss_pred EEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEE-CCCcccccccccccccCceEEEEEcCCCC-
Confidence 3321 1236678888 66555555567899999999998877553 211 113568999999874
Q ss_pred CCccEEEEeecCCcEEEEEeeec
Q 037555 212 KNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 212 ~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
.+++++...+.|.+.++...
T Consensus 219 ---~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 219 ---RIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp ---EEEEEETTCSEEEEEEEEEC
T ss_pred ---EEEEECCCCCeEEEEEEecc
Confidence 67777778899999999865
No 245
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.52 E-value=0.00017 Score=59.04 Aligned_cols=160 Identities=10% Similarity=-0.035 Sum_probs=97.8
Q ss_pred CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCC-CEEEEEeCCCeEEEEEecc
Q 037555 56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDD-NLLLSVSRDRQFSVFAIQR 134 (298)
Q Consensus 56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 134 (298)
...+..++|++.+..|..+. ...+.|..+++........+.........+++.+.+ +++++-...+.|.+.++..
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D----~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg 190 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSD----VTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG 190 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEE----TTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTS
T ss_pred CCccEEEEEecCCCeEEEEe----CCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC
Confidence 34578899998666666553 346789999987654333333222345678888754 4455555677888877653
Q ss_pred CCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-C-CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccC
Q 037555 135 TGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-D-KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQK 212 (298)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 212 (298)
.. ........-.....++++|.+..|+.... . +.|..+++....... .....-.....|+++|.+.
T Consensus 191 ~~-------~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~---~~~~~~~~PnGlavd~~~~-- 258 (386)
T 3v65_B 191 AH-------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI---IADTHLFWPNGLTIDYAGR-- 258 (386)
T ss_dssp CS-------CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE---EECSSCSCEEEEEEEGGGT--
T ss_pred Cc-------eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEE---EEECCCCCeeeEEEeCCCC--
Confidence 21 11112222345688999997766666553 3 678888886543322 1122234578999998762
Q ss_pred CccEEEEeecCCcEEEEEeee
Q 037555 213 NHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 213 ~~~~l~~g~~dg~i~vwd~~~ 233 (298)
.+.++-...+.|..+++..
T Consensus 259 --~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 259 --RMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp --EEEEEETTTTEEEEECTTS
T ss_pred --EEEEEECCCCEEEEEeCCC
Confidence 4445545567888888754
No 246
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.52 E-value=3.8e-05 Score=61.26 Aligned_cols=156 Identities=12% Similarity=0.049 Sum_probs=94.8
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc--------------------cccccEEEEEEcC-CC
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ--------------------SHSLTVTQIRFSH-DD 115 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~--------------------~~~~~v~~~~~~~-~~ 115 (298)
....+++|+++++++.++ ..++.|..|+..+++.. .+. .....+..+++.+ ++
T Consensus 19 ~~p~~i~~d~~g~~l~v~-----~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g 92 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTS-----VQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN 92 (322)
T ss_dssp SCCCCEECCTTCSSEEEE-----CTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred CCceEEEEcCCCCEEEEE-----cCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence 456788899999877777 34788999988754332 111 0123578899997 55
Q ss_pred CEEEEEeCCCeEEEEEeccCCCCccceeeeEE-ee-ccCCceEEEEEcc-CCCEEEEeeC-----------------CCe
Q 037555 116 NLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR-QE-AHKRIIWSCSWNP-FGHEFATGSR-----------------DKT 175 (298)
Q Consensus 116 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~-~~~~~v~~~~~~~-~~~~l~~~~~-----------------dg~ 175 (298)
+ |+.+...+.|..+|..... ...+.. .. ........+++.+ +++.+++-.. ++.
T Consensus 93 ~-l~v~d~~~~i~~~d~~~g~-----~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~ 166 (322)
T 2fp8_A 93 Q-LYIVDCYYHLSVVGSEGGH-----ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGR 166 (322)
T ss_dssp E-EEEEETTTEEEEECTTCEE-----CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred c-EEEEECCCCEEEEeCCCCE-----EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCce
Confidence 4 5555445557777755311 111111 11 1113467899999 8876665432 367
Q ss_pred EEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEe-ecCCcEEEEEeee
Q 037555 176 VKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVG-MESGVIELWSISV 233 (298)
Q Consensus 176 i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g-~~dg~i~vwd~~~ 233 (298)
|..+|..+++....... ......++++|++ .+|..+ ...+.|.+|++..
T Consensus 167 v~~~d~~~~~~~~~~~~----~~~p~gia~~~dg-----~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 167 LIKYDPSTKETTLLLKE----LHVPGGAEVSADS-----SFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp EEEEETTTTEEEEEEEE----ESCCCEEEECTTS-----SEEEEEEGGGTEEEEEESSS
T ss_pred EEEEeCCCCEEEEeccC----CccCcceEECCCC-----CEEEEEeCCCCeEEEEECCC
Confidence 88888766543221111 1334679999987 555444 5568899999874
No 247
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.45 E-value=0.00035 Score=56.36 Aligned_cols=160 Identities=11% Similarity=-0.025 Sum_probs=99.0
Q ss_pred CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCC-CCEEEEEeCCCeEEEEEecc
Q 037555 56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHD-DNLLLSVSRDRQFSVFAIQR 134 (298)
Q Consensus 56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~ 134 (298)
...+..++|++....|..+. ...+.|..+++........+.........+++.+. ++++++-...+.|.+.++..
T Consensus 72 ~~~~~~l~~d~~~~~ly~~D----~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG 147 (349)
T 3v64_C 72 LENAIALDFHHRRELVFWSD----VTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG 147 (349)
T ss_dssp CSCEEEEEEETTTTEEEEEE----TTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEeccccEEEEEe----ccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC
Confidence 34578999998766666553 34678999998765433323222234567888874 44555556678899988764
Q ss_pred CCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee-CC-CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccC
Q 037555 135 TGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS-RD-KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQK 212 (298)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 212 (298)
.. ........-.....++++|.+..|+... .. +.|...++....... .....-.....++++|.+.
T Consensus 148 ~~-------~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~---~~~~~~~~PnGla~d~~~~-- 215 (349)
T 3v64_C 148 AH-------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI---IADTHLFWPNGLTIDYAGR-- 215 (349)
T ss_dssp CS-------CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE---SCCSSCSCEEEEEEETTTT--
T ss_pred Cc-------eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEE---EEECCCCCcceEEEeCCCC--
Confidence 21 1111222234568899999666665554 34 778888887543222 1122234578999998662
Q ss_pred CccEEEEeecCCcEEEEEeee
Q 037555 213 NHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 213 ~~~~l~~g~~dg~i~vwd~~~ 233 (298)
.+.++-...+.|..+++..
T Consensus 216 --~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 216 --RMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp --EEEEEETTTTEEEEEETTS
T ss_pred --EEEEEECCCCEEEEEeCCC
Confidence 4444545567898888764
No 248
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.43 E-value=6.4e-06 Score=65.76 Aligned_cols=136 Identities=11% Similarity=-0.013 Sum_probs=87.1
Q ss_pred CCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEE
Q 037555 68 GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR 147 (298)
Q Consensus 68 ~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 147 (298)
+..|..+ ..++.|..+|.. ++...........+.++...+++. +..++.++.|..+|.. +. ....
T Consensus 107 ~~~l~v~-----t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~-------~~~~ 171 (330)
T 3hxj_A 107 EDILYVT-----SMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GT-------EKWR 171 (330)
T ss_dssp TTEEEEE-----CTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SC-------EEEE
T ss_pred CCEEEEE-----ecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CC-------EeEE
Confidence 4455666 347889999988 666555554445556667776776 5557778899999876 22 2222
Q ss_pred eeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEE
Q 037555 148 QEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIE 227 (298)
Q Consensus 148 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~ 227 (298)
.......+.++...+++..++. + +.|..+| .+++... ........+.++...+++ .|..++.++.|.
T Consensus 172 ~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~---~~~~~~~~~~~~~~~~~g------~l~v~t~~~gl~ 238 (330)
T 3hxj_A 172 FKTNDAITSAASIGKDGTIYFG-S--DKVYAIN-PDGTEKW---NFYAGYWTVTRPAISEDG------TIYVTSLDGHLY 238 (330)
T ss_dssp EECSSCCCSCCEECTTCCEEEE-S--SSEEEEC-TTSCEEE---EECCSSCCCSCCEECTTS------CEEEEETTTEEE
T ss_pred EecCCCceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcEEE---EEccCCcceeceEECCCC------eEEEEcCCCeEE
Confidence 2333445666777777765544 4 7799999 6655544 333334567778887765 466677778888
Q ss_pred EEEe
Q 037555 228 LWSI 231 (298)
Q Consensus 228 vwd~ 231 (298)
.++.
T Consensus 239 ~~~~ 242 (330)
T 3hxj_A 239 AINP 242 (330)
T ss_dssp EECT
T ss_pred EECC
Confidence 8864
No 249
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.42 E-value=4.3e-06 Score=67.82 Aligned_cols=127 Identities=12% Similarity=-0.009 Sum_probs=92.2
Q ss_pred EEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe----------CCCeEEEEEeccCCCCccceeeeEEeecc--
Q 037555 84 EIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS----------RDRQFSVFAIQRTGTGEIDYQLIARQEAH-- 151 (298)
Q Consensus 84 ~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-- 151 (298)
.|.++|..+++.+.++.....+ .+.++||+++++++. .++.|.+||..+ .+.+..+...
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T-------~~vv~~I~v~~~ 117 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT-------FLPIADIELPDA 117 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT-------CCEEEEEEETTS
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-------CCEEEEEECCCc
Confidence 8999999999999988755555 799999999888886 478999999988 5556665432
Q ss_pred -----CCceEEEEEccCCCEEEEeeC--CCeEEE--EEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeec
Q 037555 152 -----KRIIWSCSWNPFGHEFATGSR--DKTVKI--WAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGME 222 (298)
Q Consensus 152 -----~~~v~~~~~~~~~~~l~~~~~--dg~i~~--wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~ 222 (298)
......+.++|++++++++.. +..|.+ +|..+ ...+ ... .. +.+.|++. ..+++.+.
T Consensus 118 ~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i-~v~---~~---~~~~p~g~----~~~~~~~~ 183 (368)
T 1mda_H 118 PRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLT-KSA---SC---FHIHPGAA----ATHYLGSC 183 (368)
T ss_dssp CSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEE-ECS---SC---CCCEEEET----TEEECCCC
T ss_pred cccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEE-ECC---Cc---eEEccCCC----eEEEEEcC
Confidence 123467999999999998874 467888 89877 3322 111 11 22445553 45667778
Q ss_pred CCcEEEEEeee
Q 037555 223 SGVIELWSISV 233 (298)
Q Consensus 223 dg~i~vwd~~~ 233 (298)
|+.+.+.++.+
T Consensus 184 dg~~~~vd~~~ 194 (368)
T 1mda_H 184 PASLAASDLAA 194 (368)
T ss_dssp TTSCEEEECCS
T ss_pred CCCEEEEECcc
Confidence 89988888876
No 250
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.41 E-value=0.00039 Score=55.26 Aligned_cols=160 Identities=8% Similarity=-0.092 Sum_probs=96.4
Q ss_pred CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC----ceeeeccccccccEEEEEEcCCC-CEEEEEeCCCeEEEE
Q 037555 56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS----WKAMGRLQSHSLTVTQIRFSHDD-NLLLSVSRDRQFSVF 130 (298)
Q Consensus 56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iw 130 (298)
...+..++|++.+..|..+. ...+.|..+++.. ......+...-.....+++.+.+ +++++-...+.|.++
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D----~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~ 104 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSD----LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVA 104 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEE----TTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCceEEEEEEeCCCEEEEEE----CCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEE
Confidence 34578999998766666553 3468999999875 22222222222345788888644 455555668899999
Q ss_pred EeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC--CeEEEEEccCCcceeeeeecCCCCCceEEEEEeec
Q 037555 131 AIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD--KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGL 208 (298)
Q Consensus 131 d~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 208 (298)
++.... ..............++++|.+..|+.+... +.|...++.... ...+ ....-.....++++++
T Consensus 105 ~~~g~~-------~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-~~~~--~~~~~~~P~gla~d~~ 174 (316)
T 1ijq_A 105 DTKGVK-------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSL--VTENIQWPNGITLDLL 174 (316)
T ss_dssp ETTSSS-------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEE--ECSSCSCEEEEEEETT
T ss_pred eCCCCc-------eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-eEEE--EECCCCCceEEEEecc
Confidence 876321 111122223456899999976666655543 688888876433 2211 1112345789999987
Q ss_pred cccCCccEEEEeecCCcEEEEEeee
Q 037555 209 DRQKNHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 209 ~~~~~~~~l~~g~~dg~i~vwd~~~ 233 (298)
+. .+.++-...+.|..+|+..
T Consensus 175 ~~----~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 175 SG----RLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp TT----EEEEEETTTTEEEEEETTS
T ss_pred CC----EEEEEECCCCeEEEEecCC
Confidence 62 4444545567899999864
No 251
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.40 E-value=0.00023 Score=57.49 Aligned_cols=196 Identities=8% Similarity=-0.064 Sum_probs=112.9
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEE-EEeCCCeEEEEEeccC
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLL-SVSRDRQFSVFAIQRT 135 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~ 135 (298)
+..+|.+..++. +|+.+. ...|+..++........+.. ...+..++|++.+..|. +-...+.|..+++...
T Consensus 34 d~~~C~~~~~~~-~ll~~~------~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~ 105 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFAN------RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGS 105 (349)
T ss_dssp TSSCEEESSSCC-EEEEEC------BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCCcccccccCc-eeEeec------ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCC
Confidence 445566666644 444442 45688888875544333333 34478999998655555 4445788888887642
Q ss_pred CCCccceeeeEEeeccCCceEEEEEccCCCEEE-EeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCc
Q 037555 136 GTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFA-TGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNH 214 (298)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (298)
. ..............+++.+.+..|+ +-...+.|.+.++....... .+...-.....+++.|.+.
T Consensus 106 ~-------~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~---l~~~~l~~P~~iavdp~~g---- 171 (349)
T 3v64_C 106 N-------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV---LLWQSLEKPRAIALHPMEG---- 171 (349)
T ss_dssp S-------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE---EECTTCSCEEEEEEETTTT----
T ss_pred C-------ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE---EEeCCCCCcceEEEecCcC----
Confidence 2 1111222223456788987555554 44556889999987544322 1222335578999998652
Q ss_pred cEEEEeecC-CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEE
Q 037555 215 GFLAVGMES-GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRV 293 (298)
Q Consensus 215 ~~l~~g~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 293 (298)
.++++-... +.|..+++.... . ..+ ....-...+.|+++|++. .++++-...+.|..
T Consensus 172 ~ly~td~~~~~~I~r~~~dG~~-------------~-~~~--~~~~~~~PnGla~d~~~~------~lY~aD~~~~~I~~ 229 (349)
T 3v64_C 172 TIYWTDWGNTPRIEASSMDGSG-------------R-RII--ADTHLFWPNGLTIDYAGR------RMYWVDAKHHVIER 229 (349)
T ss_dssp EEEEEECSSSCEEEEEETTSCS-------------C-EES--CCSSCSCEEEEEEETTTT------EEEEEETTTTEEEE
T ss_pred eEEEeccCCCCEEEEEeCCCCC-------------c-EEE--EECCCCCcceEEEeCCCC------EEEEEECCCCEEEE
Confidence 444444444 678777765431 1 111 111234567899998652 45555555667777
Q ss_pred eEe
Q 037555 294 FQV 296 (298)
Q Consensus 294 w~~ 296 (298)
+++
T Consensus 230 ~~~ 232 (349)
T 3v64_C 230 ANL 232 (349)
T ss_dssp EET
T ss_pred EeC
Confidence 664
No 252
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.37 E-value=0.00066 Score=55.87 Aligned_cols=162 Identities=7% Similarity=-0.101 Sum_probs=99.5
Q ss_pred cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCc----eeeeccccccccEEEEEEcC-CCCEEEEEeCCCeEE
Q 037555 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSW----KAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFS 128 (298)
Q Consensus 54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~ 128 (298)
.....+..++|++.+..|..+. ...+.|+.+++... .....+.........+++.+ .++++++-...+.|.
T Consensus 109 ~~~~~~~~l~~d~~~~~lywsD----~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~ 184 (400)
T 3p5b_L 109 PNLRNVVALDTEVASNRIYWSD----LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS 184 (400)
T ss_dssp CSCSCEEEEEEETTTTEEEEEE----TTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred cccCcceEEeeeeccCceEEEe----cCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEE
Confidence 3445788999998766666653 34678999988642 12222232334567899987 455555656678888
Q ss_pred EEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC--CCeEEEEEccCCcceeeeeecCCCCCceEEEEEe
Q 037555 129 VFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR--DKTVKIWAVENKSSVKQILALPPFNSSVTALSWV 206 (298)
Q Consensus 129 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~ 206 (298)
+.+++... ....+...-.....|++.|.+.+|+.... .+.|...++....... .....-.....|+++
T Consensus 185 ~~~~~g~~-------~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~---~~~~~l~~P~glavd 254 (400)
T 3p5b_L 185 VADTKGVK-------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS---LVTENIQWPNGITLD 254 (400)
T ss_dssp EECTTTCS-------EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE---EECSSCSCEEEEEEE
T ss_pred EEeCCCCc-------eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE---EEECCCCceEEEEEE
Confidence 88876421 11222223345689999997766666553 3678888887544322 112223567899999
Q ss_pred eccccCCccEEEEeecCCcEEEEEeee
Q 037555 207 GLDRQKNHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 207 ~~~~~~~~~~l~~g~~dg~i~vwd~~~ 233 (298)
+.+. .+.++-...+.|..+|+..
T Consensus 255 ~~~~----~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 255 LLSG----RLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp TTTT----EEEEEETTTTEEEEEETTS
T ss_pred eCCC----EEEEEECCCCEEEEEeCCC
Confidence 8762 3444444567888888764
No 253
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.35 E-value=6.7e-05 Score=61.15 Aligned_cols=178 Identities=8% Similarity=0.091 Sum_probs=104.2
Q ss_pred CEEEeEeccCCCCceEEEEEEcCCceeeeccccccc-------cEEEEEEcC--CCCEEEEEeCCCeEEEEEeccCCCCc
Q 037555 69 KLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSL-------TVTQIRFSH--DDNLLLSVSRDRQFSVFAIQRTGTGE 139 (298)
Q Consensus 69 ~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~-------~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~ 139 (298)
..++.+ ..++.|..+|..+++.+........ .+..+.-.| .+..++.++.++.+..+|..++
T Consensus 189 ~~v~~g-----~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG---- 259 (376)
T 3q7m_A 189 GAAVVG-----GDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG---- 259 (376)
T ss_dssp TEEEEC-----CTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC----
T ss_pred CEEEEE-----cCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC----
Confidence 345555 3478999999998887655432110 000011112 3457777888999999998763
Q ss_pred cceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEE
Q 037555 140 IDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAV 219 (298)
Q Consensus 140 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~ 219 (298)
+.+-... ......+.. ++..++.++.++.|..+|.++++........ ....+...... + ..|+.
T Consensus 260 ---~~~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~--~~~~~~~~~~~--~-----~~l~v 323 (376)
T 3q7m_A 260 ---QIMWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDL--LHRLLTSPVLY--N-----GNLVV 323 (376)
T ss_dssp ---CEEEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTT--TTSCCCCCEEE--T-----TEEEE
T ss_pred ---cEEeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeeccc--CCCcccCCEEE--C-----CEEEE
Confidence 2232222 122333333 4678888888999999999998876532211 11222223332 2 47888
Q ss_pred eecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555 220 GMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ 295 (298)
Q Consensus 220 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~ 295 (298)
++.+|.|+++|..++ +....... ....+.+.....+ ..|+.++.+|.|..|+
T Consensus 324 ~~~~g~l~~~d~~tG-------------~~~~~~~~---~~~~~~~~~~~~~--------~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 324 GDSEGYLHWINVEDG-------------RFVAQQKV---DSSGFQTEPVAAD--------GKLLIQAKDGTVYSIT 375 (376)
T ss_dssp ECTTSEEEEEETTTC-------------CEEEEEEC---CTTCBCSCCEEET--------TEEEEEBTTSCEEEEE
T ss_pred EeCCCeEEEEECCCC-------------cEEEEEec---CCCcceeCCEEEC--------CEEEEEeCCCEEEEEe
Confidence 889999999999877 33333221 1112211111123 4677788899999887
No 254
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.30 E-value=0.0007 Score=53.47 Aligned_cols=206 Identities=8% Similarity=-0.008 Sum_probs=111.8
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCC--e
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDR--Q 126 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~ 126 (298)
+..+... .....++|+++++++++- ..++.|..||... +....+. .......+++.++++++++..... .
T Consensus 25 ~~~~p~~-~~pegia~~~~g~lyv~d-----~~~~~I~~~d~~g-~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~ 96 (306)
T 2p4o_A 25 ITSFPVN-TFLENLASAPDGTIFVTN-----HEVGEIVSITPDG-NQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIP 96 (306)
T ss_dssp EEEECTT-CCEEEEEECTTSCEEEEE-----TTTTEEEEECTTC-CEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCE
T ss_pred eEeCCCC-CCcceEEECCCCCEEEEe-----CCCCeEEEECCCC-ceEEEEe-CCCCceeEEEcCCCcEEEEeccCCcce
Confidence 4444322 467899999999866665 3478899999874 3333232 234688999999999766554332 4
Q ss_pred EEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcc-eeeee------ecCCCCCc
Q 037555 127 FSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSS-VKQIL------ALPPFNSS 199 (298)
Q Consensus 127 i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~------~~~~~~~~ 199 (298)
|..++...+. ...+... ........++..+.+..+++-..++.|..+|...+.. +.... .....-..
T Consensus 97 v~~~d~~~g~-----~~~~~~~-~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~ 170 (306)
T 2p4o_A 97 VVSLVKSDGT-----VETLLTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA 170 (306)
T ss_dssp EEEEECTTSC-----EEEEEEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred EEEEcCCCCe-----EEEEEeC-CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence 5556654422 1111111 1122234455555554444444588899998765321 11000 00011123
Q ss_pred eEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcc
Q 037555 200 VTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRT 279 (298)
Q Consensus 200 v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 279 (298)
...+ +|++. .++++-...+.|..|++...... .....+... .....|++++++
T Consensus 171 pngi--s~dg~----~lyv~d~~~~~I~~~~~~~~g~~----------~~~~~~~~~----~~P~gi~vd~dG------- 223 (306)
T 2p4o_A 171 ANGL--KRFGN----FLYVSNTEKMLLLRIPVDSTDKP----------GEPEIFVEQ----TNIDDFAFDVEG------- 223 (306)
T ss_dssp EEEE--EEETT----EEEEEETTTTEEEEEEBCTTSCB----------CCCEEEEES----CCCSSEEEBTTC-------
T ss_pred CCCc--CcCCC----EEEEEeCCCCEEEEEEeCCCCCC----------CccEEEecc----CCCCCeEECCCC-------
Confidence 4455 77762 34455556788999998641000 001111111 234567788877
Q ss_pred eEEEeeeCCCcEEEeE
Q 037555 280 MQLASCGADNTVRVFQ 295 (298)
Q Consensus 280 ~~l~s~~~d~~i~iw~ 295 (298)
+++++....+.|.+++
T Consensus 224 ~l~va~~~~~~V~~~~ 239 (306)
T 2p4o_A 224 NLYGATHIYNSVVRIA 239 (306)
T ss_dssp CEEEECBTTCCEEEEC
T ss_pred CEEEEeCCCCeEEEEC
Confidence 6666666666777765
No 255
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.30 E-value=7.5e-05 Score=60.86 Aligned_cols=146 Identities=8% Similarity=-0.046 Sum_probs=86.2
Q ss_pred CCEEEeEeccCCCCceEEEEEEcCCceeeeccccc---------cccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCC
Q 037555 68 GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSH---------SLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTG 138 (298)
Q Consensus 68 ~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 138 (298)
+..++++ ..++.|..+|..+++.+-.+... ...+.+.. ..++..++.++.++.|..+|..++
T Consensus 53 ~~~v~~~-----~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG--- 123 (376)
T 3q7m_A 53 DNVVYAA-----DRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDG--- 123 (376)
T ss_dssp TTEEEEE-----CTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTC---
T ss_pred CCEEEEE-----cCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCC---
Confidence 4566666 34789999999999877554431 12222211 124567888888999999998873
Q ss_pred ccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCC--CceEEEEEeeccccCCccE
Q 037555 139 EIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFN--SSVTALSWVGLDRQKNHGF 216 (298)
Q Consensus 139 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~ 216 (298)
+..-.............. .+..+++++.++.|..+|.++++............ ......... + ..
T Consensus 124 ----~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~-----~~ 190 (376)
T 3q7m_A 124 ----TVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--F-----GA 190 (376)
T ss_dssp ----CEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--T-----TE
T ss_pred ----CEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--C-----CE
Confidence 223222222111111122 24578888889999999999988766332111000 000111222 2 46
Q ss_pred EEEeecCCcEEEEEeeecc
Q 037555 217 LAVGMESGVIELWSISVNR 235 (298)
Q Consensus 217 l~~g~~dg~i~vwd~~~~~ 235 (298)
++.+..++.|..+|..+++
T Consensus 191 v~~g~~~g~l~~~d~~tG~ 209 (376)
T 3q7m_A 191 AVVGGDNGRVSAVLMEQGQ 209 (376)
T ss_dssp EEECCTTTEEEEEETTTCC
T ss_pred EEEEcCCCEEEEEECCCCc
Confidence 7788888999999987663
No 256
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.30 E-value=0.00029 Score=57.74 Aligned_cols=194 Identities=8% Similarity=-0.060 Sum_probs=109.9
Q ss_pred eEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEE-EEeCCCeEEEEEeccCCC
Q 037555 59 LFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLL-SVSRDRQFSVFAIQRTGT 137 (298)
Q Consensus 59 v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~ 137 (298)
-.|.+..+. .+|+.+. ...|+..++........+. ....+..++|++.+..|+ +-...+.|..+++...
T Consensus 79 ~~C~~~~~~-~~l~~~~------~~~I~~i~~~~~~~~~~~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~-- 148 (386)
T 3v65_B 79 RSCKALGPE-PVLLFAN------RIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGS-- 148 (386)
T ss_dssp SCEEECSSC-CEEEEEC------BSCEEEECTTSCCCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC--
T ss_pred CeECCcccc-ceeEeec------CccceeeccCCCcEEEEec-CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCC--
Confidence 345555553 3444442 4568888887655433333 234578999998555544 4456788888887642
Q ss_pred CccceeeeEEeeccCCceEEEEEccCCCEEEE-eeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccE
Q 037555 138 GEIDYQLIARQEAHKRIIWSCSWNPFGHEFAT-GSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGF 216 (298)
Q Consensus 138 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 216 (298)
...............+++.+.+..|+. -...+.|.+.++....... .+.........+++.|.+. .+
T Consensus 149 -----~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~---l~~~~l~~P~giavdp~~g----~l 216 (386)
T 3v65_B 149 -----NVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV---LLWQSLEKPRAIALHPMEG----TI 216 (386)
T ss_dssp -----CEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE---EECSSCSCEEEEEEETTTT----EE
T ss_pred -----CcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE---eecCCCCCCcEEEEEcCCC----eE
Confidence 111222222234467888875555544 4456788888887543222 1222335678999998762 34
Q ss_pred EEEeecC-CcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeE
Q 037555 217 LAVGMES-GVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQ 295 (298)
Q Consensus 217 l~~g~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~ 295 (298)
+++-... +.|..+++... .....+. ..-...+.|+|+|++. .++++-+..+.|..++
T Consensus 217 y~td~~~~~~I~r~~~dG~-------------~~~~~~~---~~~~~PnGlavd~~~~------~lY~aD~~~~~I~~~d 274 (386)
T 3v65_B 217 YWTDWGNTPRIEASSMDGS-------------GRRIIAD---THLFWPNGLTIDYAGR------RMYWVDAKHHVIERAN 274 (386)
T ss_dssp EEEECSSSCEEEEEETTSC-------------SCEEEEC---SSCSCEEEEEEEGGGT------EEEEEETTTTEEEEEC
T ss_pred EEeccCCCCEEEEEeCCCC-------------CcEEEEE---CCCCCeeeEEEeCCCC------EEEEEECCCCEEEEEe
Confidence 4444344 67777776533 1111111 1233567899997652 5555555566777766
Q ss_pred e
Q 037555 296 V 296 (298)
Q Consensus 296 ~ 296 (298)
+
T Consensus 275 ~ 275 (386)
T 3v65_B 275 L 275 (386)
T ss_dssp T
T ss_pred C
Confidence 4
No 257
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.28 E-value=4.7e-05 Score=57.96 Aligned_cols=135 Identities=10% Similarity=0.116 Sum_probs=88.5
Q ss_pred CCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeE
Q 037555 67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIA 146 (298)
Q Consensus 67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 146 (298)
++..|.... ..++.+.+||..+.+.+.++...... ..+ ++++..|+.+..++.|.++|..+ .+...
T Consensus 95 ~g~~ly~lt----w~~~~v~v~D~~t~~~~~ti~~~~eG-~gl--t~dg~~L~~SdGs~~i~~iDp~T-------~~v~~ 160 (262)
T 3nol_A 95 WKDKIVGLT----WKNGLGFVWNIRNLRQVRSFNYDGEG-WGL--THNDQYLIMSDGTPVLRFLDPES-------LTPVR 160 (262)
T ss_dssp ETTEEEEEE----SSSSEEEEEETTTCCEEEEEECSSCC-CCE--EECSSCEEECCSSSEEEEECTTT-------CSEEE
T ss_pred eCCEEEEEE----eeCCEEEEEECccCcEEEEEECCCCc-eEE--ecCCCEEEEECCCCeEEEEcCCC-------CeEEE
Confidence 345555554 35889999999999998888742221 233 35777777776688899999887 33344
Q ss_pred Eeecc--C---CceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCC----------CCCceEEEEEeecccc
Q 037555 147 RQEAH--K---RIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPP----------FNSSVTALSWVGLDRQ 211 (298)
Q Consensus 147 ~~~~~--~---~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~ 211 (298)
.+.-. . ..++.+.|. ++..++..-.++.|.+.|.++++....+. +.+ .....+.++|+|...
T Consensus 161 ~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id-~~~L~~~~~~~~~~~~vlNGIA~dp~~~- 237 (262)
T 3nol_A 161 TITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIID-LNGILAEAGPLPSPIDVLNGIAWDKEHH- 237 (262)
T ss_dssp EEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEE-CTTGGGGSCSCCSSCCCEEEEEEETTTT-
T ss_pred EEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEE-CCcCccccccccCcCCceEEEEEcCCCC-
Confidence 33321 1 334567776 67655555568899999999998877553 211 123568999999873
Q ss_pred CCccEEEEee
Q 037555 212 KNHGFLAVGM 221 (298)
Q Consensus 212 ~~~~~l~~g~ 221 (298)
.++++|-
T Consensus 238 ---~lfVTGK 244 (262)
T 3nol_A 238 ---RLFVTGK 244 (262)
T ss_dssp ---EEEEEET
T ss_pred ---EEEEECC
Confidence 4555553
No 258
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.27 E-value=0.00051 Score=54.89 Aligned_cols=197 Identities=11% Similarity=0.059 Sum_probs=105.2
Q ss_pred CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeec-cccccccEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555 55 HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR-LQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQ 133 (298)
Q Consensus 55 h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 133 (298)
+...+..+.+.+++..++.+. ++.|.. ..+.++.-.. .......+..+.+.+++.+++.+...+..+-.|-.
T Consensus 120 ~~~~~~~i~~~~~~~~~~~~~------~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g 192 (327)
T 2xbg_A 120 LPGSPRLIKALGNGSAEMITN------VGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG 192 (327)
T ss_dssp CSSCEEEEEEEETTEEEEEET------TCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT
T ss_pred CCCCeEEEEEECCCCEEEEeC------CccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC
Confidence 345678888877777776662 343322 1222322211 12345578899999988877666544333333310
Q ss_pred cCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC--CCCCceEEEEEeecccc
Q 037555 134 RTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP--PFNSSVTALSWVGLDRQ 211 (298)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~ 211 (298)
+.. +..+. ......+..+.+.+++..+ .++.+|.+++.+...++....+ ... .....+.++++.+.+
T Consensus 193 -G~t----W~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~-~~~~~~~~~~~~~v~~~~~~-- 261 (327)
T 2xbg_A 193 -QTA----WEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGEL-LSPLRRNSVGFLDLAYRTPN-- 261 (327)
T ss_dssp -CSS----CEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCC-BCTTSSCCSCEEEEEESSSS--
T ss_pred -CCc----eeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEec-cCCcccCCcceEEEEecCCC--
Confidence 110 33332 2345678889998887655 4556788777643323322211 111 122357888888765
Q ss_pred CCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcE
Q 037555 212 KNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTV 291 (298)
Q Consensus 212 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i 291 (298)
.+++++ .++.| ++....+ .....+.........+.++.|.+++ .++.++.+|.|
T Consensus 262 ---~~~~~g-~~g~i-~~S~DgG-------------~tW~~~~~~~~~~~~~~~v~~~~~~--------~~~~~G~~G~i 315 (327)
T 2xbg_A 262 ---EVWLAG-GAGAL-LCSQDGG-------------QTWQQDVDVKKVPSNFYKILFFSPD--------QGFILGQKGIL 315 (327)
T ss_dssp ---CEEEEE-STTCE-EEESSTT-------------SSCEECGGGTTSSSCCCEEEEEETT--------EEEEECSTTEE
T ss_pred ---EEEEEe-CCCeE-EEeCCCC-------------cccEEcCccCCCCCCeEEEEEECCC--------ceEEEcCCceE
Confidence 555554 46666 3333333 1112221111123557788887655 46677778877
Q ss_pred EEeE
Q 037555 292 RVFQ 295 (298)
Q Consensus 292 ~iw~ 295 (298)
.-++
T Consensus 316 ~~~~ 319 (327)
T 2xbg_A 316 LRYV 319 (327)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 6554
No 259
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.25 E-value=0.00055 Score=51.62 Aligned_cols=135 Identities=10% Similarity=0.063 Sum_probs=88.6
Q ss_pred CCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEE
Q 037555 68 GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIAR 147 (298)
Q Consensus 68 ~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 147 (298)
+..|.... ..++.+.+||..+.+.+.++...... ..++ +++..|+.+..++.|.++|..+ .+.+..
T Consensus 74 ~~~ly~lt----w~~~~v~v~D~~tl~~~~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t-------~~~~~~ 139 (243)
T 3mbr_X 74 RDRLIQLT----WRNHEGFVYDLATLTPRARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDT-------LQQVGS 139 (243)
T ss_dssp TTEEEEEE----SSSSEEEEEETTTTEEEEEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTT-------CCEEEE
T ss_pred CCEEEEEE----eeCCEEEEEECCcCcEEEEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCC-------CeEEEE
Confidence 44555543 35889999999999999888743222 3444 4677777777789999999887 344444
Q ss_pred eecc--C---CceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeec----------CCCCCceEEEEEeeccccC
Q 037555 148 QEAH--K---RIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILAL----------PPFNSSVTALSWVGLDRQK 212 (298)
Q Consensus 148 ~~~~--~---~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~~ 212 (298)
+.-. . ..++.+.|. ++..++..-.+..|.+.|.++++....+..- .......+.|+++|.+.
T Consensus 140 I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~-- 216 (243)
T 3mbr_X 140 IKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD-- 216 (243)
T ss_dssp EECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT--
T ss_pred EEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCC--
Confidence 3321 1 345667766 5665555556789999999998877654311 01223568999999873
Q ss_pred CccEEEEee
Q 037555 213 NHGFLAVGM 221 (298)
Q Consensus 213 ~~~~l~~g~ 221 (298)
.++++|-
T Consensus 217 --~lfVTGK 223 (243)
T 3mbr_X 217 --RLFVTGK 223 (243)
T ss_dssp --EEEEEET
T ss_pred --EEEEECC
Confidence 5666654
No 260
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=98.20 E-value=0.00099 Score=53.01 Aligned_cols=186 Identities=12% Similarity=0.165 Sum_probs=108.1
Q ss_pred ceEEEEEEcCCceeeeccccccccEEEEEEcCC----CC---EEEEEeC---CCeEEEEEeccCCCCccceeeeEEee--
Q 037555 82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHD----DN---LLLSVSR---DRQFSVFAIQRTGTGEIDYQLIARQE-- 149 (298)
Q Consensus 82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~----~~---~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~-- 149 (298)
.+-+.+||+ +++.++.+.. +.++.+..-|+ |+ ++++... +++|.+|++..... .+..+.
T Consensus 49 ~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~------~l~~i~~~ 119 (355)
T 3amr_A 49 KSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG------TLQSMTDP 119 (355)
T ss_dssp TTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC------CEEECSCT
T ss_pred CCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC------ceeecccc
Confidence 568999999 6888887763 45666666552 22 2333333 57899998853211 122221
Q ss_pred -----ccCCceEEEEE--ccC-CC-EEEEeeCCCeEEEEEccC---C-cceeeeeecCCCCCceEEEEEeeccccCCccE
Q 037555 150 -----AHKRIIWSCSW--NPF-GH-EFATGSRDKTVKIWAVEN---K-SSVKQILALPPFNSSVTALSWVGLDRQKNHGF 216 (298)
Q Consensus 150 -----~~~~~v~~~~~--~~~-~~-~l~~~~~dg~i~~wd~~~---~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 216 (298)
.....+..+++ +|. +. ++++...+|.+..|++.. + .....+..+. ..+.+..+...+.. ..
T Consensus 120 ~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~-lgsq~EgcvvDd~~-----g~ 193 (355)
T 3amr_A 120 DHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK-MNSQTEGMAADDEY-----GR 193 (355)
T ss_dssp TSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE-CSSCEEEEEEETTT-----TE
T ss_pred ccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec-CCCCcceEEEcCCC-----Ce
Confidence 11145667777 664 43 677778889999999843 2 1112223444 45678888888876 68
Q ss_pred EEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEee--cCCCCCCCcceEEEeeeCCCcEEEe
Q 037555 217 LAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWK--THEKPKNSRTMQLASCGADNTVRVF 294 (298)
Q Consensus 217 l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~l~s~~~d~~i~iw 294 (298)
|+.+-++.-|..|+.+...... ...+..+. ...-...+..|+.- ++++ +.+|+++-.+++..+|
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~--------~~~v~~~~-~g~l~aDvEGLai~~~~~g~-----gyLivSsQG~~s~~Vy 259 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSN--------GTVIDRAD-GRHLTRDIEGLTIYYAADGK-----GYLMASSQGNSSYAIY 259 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSC--------CEEEEEBS-SSSBCSCEEEEEEEECGGGC-----EEEEEEEGGGTEEEEE
T ss_pred EEEecccceEEEEeCCcCCCCC--------ceEEEEec-CCccccCcceEEEEecCCCC-----EEEEEEcCCCCEEEEE
Confidence 9999888655555533221000 02333322 12223467888874 4431 1345555467789999
Q ss_pred Ee
Q 037555 295 QV 296 (298)
Q Consensus 295 ~~ 296 (298)
|.
T Consensus 260 dr 261 (355)
T 3amr_A 260 DR 261 (355)
T ss_dssp ES
T ss_pred EC
Confidence 86
No 261
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.20 E-value=0.00089 Score=55.69 Aligned_cols=156 Identities=7% Similarity=0.047 Sum_probs=92.6
Q ss_pred ceEEEEEcCC--CCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCC---Ce-EEEEE
Q 037555 58 ELFSLCCDHQ--GKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD---RQ-FSVFA 131 (298)
Q Consensus 58 ~v~~~~~s~~--~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~-i~iwd 131 (298)
....++|+|+ ...|..+.. .+.|+.++..+++...... .......++++++++++++.... .. +...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~-----~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~ 213 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQ-----RDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFT 213 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECB-----TSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEEC
T ss_pred CCceEEEccccCCCEEEEEeC-----CCCEEEEECCCCEEEEeec-CCCCccEEEECCCCCEEEEcCCCCcccceEEEEE
Confidence 4678999984 455666622 2789999997776554333 44557899999999954444321 12 22233
Q ss_pred eccCCCCccceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555 132 IQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR 210 (298)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (298)
.... ......+. .-.....++++| ++.++++-..++.|+.+|..++.....+.... .......++|+|++
T Consensus 214 ~~~~------~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~-~~~~~~~ia~dpdG- 284 (433)
T 4hw6_A 214 RASG------FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD-TKGSNFHIVWHPTG- 284 (433)
T ss_dssp GGGT------TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS-CCSSCEEEEECTTS-
T ss_pred CCCC------eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC-CCCCcccEEEeCCC-
Confidence 2211 10001111 223346788999 66655555567889999988665422222222 12233579999998
Q ss_pred cCCcc-EEEEeecCCcEEEEEee
Q 037555 211 QKNHG-FLAVGMESGVIELWSIS 232 (298)
Q Consensus 211 ~~~~~-~l~~g~~dg~i~vwd~~ 232 (298)
. ++++-...+.|+.+++.
T Consensus 285 ----~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 285 ----DWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp ----SEEEEEETTTTEEEEEEBC
T ss_pred ----CEEEEEeCCCCEEEEEeCC
Confidence 5 44555566789988865
No 262
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.19 E-value=0.00017 Score=54.98 Aligned_cols=136 Identities=9% Similarity=-0.004 Sum_probs=90.0
Q ss_pred CCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeE
Q 037555 67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIA 146 (298)
Q Consensus 67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 146 (298)
++..|.... ..++.+.+||..+.+.+.++..... -..++ ++++.|+.+..++.|.++|..+ .+.+.
T Consensus 104 ~g~~Ly~lt----w~~~~v~V~D~~Tl~~~~ti~~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T-------~~v~~ 169 (268)
T 3nok_A 104 DGERLYQLT----WTEGLLFTWSGMPPQRERTTRYSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDG-------FALVG 169 (268)
T ss_dssp CSSCEEEEE----SSSCEEEEEETTTTEEEEEEECSSC-CCCEE--EETTEEEEECSSSEEEEECTTT-------CCEEE
T ss_pred eCCEEEEEE----ccCCEEEEEECCcCcEEEEEeCCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCC-------CeEEE
Confidence 344444443 3589999999999999988874222 23444 5678888777789999999887 33444
Q ss_pred Eeec--cC---CceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeec----------CCCCCceEEEEEeecccc
Q 037555 147 RQEA--HK---RIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILAL----------PPFNSSVTALSWVGLDRQ 211 (298)
Q Consensus 147 ~~~~--~~---~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~ 211 (298)
.+.- +. ..++.+.|. ++..++....+..|.+.|.++++....+..- .......+.|+++|.+.
T Consensus 170 ~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~- 247 (268)
T 3nok_A 170 AVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSG- 247 (268)
T ss_dssp EEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTC-
T ss_pred EEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCC-
Confidence 3332 11 245677777 6765555556889999999999877644221 01224568999999873
Q ss_pred CCccEEEEee
Q 037555 212 KNHGFLAVGM 221 (298)
Q Consensus 212 ~~~~~l~~g~ 221 (298)
.+++||-
T Consensus 248 ---rlfVTGK 254 (268)
T 3nok_A 248 ---RIFMTGK 254 (268)
T ss_dssp ---CEEEEET
T ss_pred ---EEEEeCC
Confidence 5666664
No 263
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.19 E-value=0.00018 Score=63.46 Aligned_cols=153 Identities=15% Similarity=0.143 Sum_probs=97.6
Q ss_pred EEEEcCCCCEEEeEeccCCCCce-------------------EEEEEEcCCceeeecccc--cc-------ccEEEEEEc
Q 037555 61 SLCCDHQGKLVASSCKAQSTAAA-------------------EIWLWEVGSWKAMGRLQS--HS-------LTVTQIRFS 112 (298)
Q Consensus 61 ~~~~s~~~~~l~~~~~~~~~~d~-------------------~i~vw~~~~~~~~~~~~~--~~-------~~v~~~~~~ 112 (298)
.+++.|+..+++.+.. ++ .|..+|..+++.+-.++. |. .+.....+.
T Consensus 234 ~~a~d~~~~~vy~~~~-----~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~ 308 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTG-----NGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELN 308 (668)
T ss_dssp CEEEETTTTEEEEECC-----CEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE
T ss_pred ceEEcCCCCEEEEeCC-----CCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEec
Confidence 5688888888887743 33 499999999998766553 22 222223333
Q ss_pred CCCC---EEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccC------------Cce----------------------
Q 037555 113 HDDN---LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHK------------RII---------------------- 155 (298)
Q Consensus 113 ~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------------~~v---------------------- 155 (298)
.+|+ .++.++.+|.++++|..+++ ++....... .++
T Consensus 309 ~~G~~~~~v~~~~~~G~l~~lD~~tG~-------~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~ 381 (668)
T 1kv9_A 309 IDGKPRKVLMQAPKNGFFYVLDRTNGK-------LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAH 381 (668)
T ss_dssp ETTEEEEEEEECCTTSEEEEEETTTCC-------EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSS
T ss_pred cCCcEEEEEEEECCCCEEEEEECCCCC-------EeccccccccccccccccccCCccccccccccCCeeEECCCCcccc
Confidence 3665 68889999999999988743 221111000 000
Q ss_pred --EEEEEccCCCEEEEe------------------------------------eCCCeEEEEEccCCcceeeeeecCCCC
Q 037555 156 --WSCSWNPFGHEFATG------------------------------------SRDKTVKIWAVENKSSVKQILALPPFN 197 (298)
Q Consensus 156 --~~~~~~~~~~~l~~~------------------------------------~~dg~i~~wd~~~~~~~~~~~~~~~~~ 197 (298)
..++++|+..++++. ..+|.|..||+.+++....... .
T Consensus 382 ~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~----~ 457 (668)
T 1kv9_A 382 NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY----P 457 (668)
T ss_dssp CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE----S
T ss_pred CCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC----C
Confidence 125677766665542 1347899999999887664322 2
Q ss_pred CceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555 198 SSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 198 ~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
.+.....+...+ .++++++.|+.|+.||.+++
T Consensus 458 ~~~~~~~~~t~g-----g~vf~g~~dg~l~a~d~~tG 489 (668)
T 1kv9_A 458 THWNGGTLSTAG-----NLVFQGTAAGQMHAYSADKG 489 (668)
T ss_dssp SSCCCCEEEETT-----TEEEEECTTSEEEEEETTTC
T ss_pred CCCcCceeEeCC-----CEEEEECCcccchhhhhhcC
Confidence 233333444455 68889999999999999887
No 264
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.17 E-value=0.002 Score=53.47 Aligned_cols=125 Identities=6% Similarity=0.050 Sum_probs=73.8
Q ss_pred EeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceee--eccccccccEEEEEEcC-CCCEEEEEeCCCeE
Q 037555 51 KLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAM--GRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQF 127 (298)
Q Consensus 51 ~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~--~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 127 (298)
.+.........++|+++++.|+.+..........+.+.+.. +... ..+.. ......++++| ++.++++-..++.|
T Consensus 173 ~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V 250 (430)
T 3tc9_A 173 TVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQV 250 (430)
T ss_dssp EEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred EEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEE
Confidence 33334456889999999996666643111112244445533 3222 12221 22356788999 67777776678899
Q ss_pred EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEe-eCCCeEEEEEccC
Q 037555 128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATG-SRDKTVKIWAVEN 183 (298)
Q Consensus 128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~~wd~~~ 183 (298)
..++..... ...+.... .......++|+|++++|+.+ ...+.|..++...
T Consensus 251 ~~~~~~~~~-----~~~~~~~~-~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 251 FRYDFTTQE-----TTPLFTIQ-DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEEETTTTE-----EEEEEECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EEEECCCCc-----EEEEEEcC-CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 999987421 11111111 12345789999999965555 4578899988764
No 265
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.14 E-value=0.00025 Score=58.94 Aligned_cols=155 Identities=8% Similarity=0.048 Sum_probs=96.2
Q ss_pred ceEEEEEcC-CCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeC-CC----eEEEEE
Q 037555 58 ELFSLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSR-DR----QFSVFA 131 (298)
Q Consensus 58 ~v~~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg----~i~iwd 131 (298)
....++++| ++..|..+.. .+.|+.+|+..+....... .......++|+++++.|+++.. ++ .+.+++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~-----~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~ 211 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGE-----QHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT 211 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEB-----TEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeC-----CCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe
Confidence 457889998 4566666632 3789999998665443333 4456789999999996666554 22 233334
Q ss_pred eccCCCCccceeeeEEeeccCCceEEEEEcc-CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555 132 IQRTGTGEIDYQLIARQEAHKRIIWSCSWNP-FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR 210 (298)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (298)
.. .. ......+.. ......++++| ++.++++-..++.|..++........ +.... .......++|+|++
T Consensus 212 ~~-g~-----~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~-~~~~~-~~~~P~gia~~pdG- 281 (430)
T 3tc9_A 212 RE-SG-----FKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP-LFTIQ-DSGWEFHIQFHPSG- 281 (430)
T ss_dssp GG-GT-----SCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE-EEECS-SSSCCEEEEECTTS-
T ss_pred CC-Cc-----eeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EEEcC-CCCcceeEEEcCCC-
Confidence 32 21 110111111 23356788999 66666665577899999988654321 21222 22456899999998
Q ss_pred cCCcc-EEEEeecCCcEEEEEee
Q 037555 211 QKNHG-FLAVGMESGVIELWSIS 232 (298)
Q Consensus 211 ~~~~~-~l~~g~~dg~i~vwd~~ 232 (298)
. ++++-...+.|..++..
T Consensus 282 ----~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 282 ----NYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp ----SEEEEEETTTTEEEEEEEE
T ss_pred ----CEEEEEECCCCEEEEEeCC
Confidence 5 45555567889998876
No 266
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.14 E-value=0.0018 Score=51.51 Aligned_cols=159 Identities=9% Similarity=-0.060 Sum_probs=97.3
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeee-ccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEecc
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMG-RLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQR 134 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 134 (298)
..+.+++|++.+..|..+. ...+.|..+++....... .+...-.....+++.+ .++++++-...+.|.++++..
T Consensus 35 ~~~~~ld~d~~~~~lyw~D----~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG 110 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSD----VSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDG 110 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEE----TTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CccEEEEEEeCCCEEEEEE----CCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCC
Confidence 3567899998665555553 346789999987653211 1222223456788887 445555556678899998764
Q ss_pred CCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC--CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccC
Q 037555 135 TGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR--DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQK 212 (298)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 212 (298)
.. . .............+++.|.+..|+.+.. .+.|...++....... + ....-.....++++|++.
T Consensus 111 ~~-----~--~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~-~--~~~~l~~Pnglavd~~~~-- 178 (318)
T 3sov_A 111 SL-----R--KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI-I--INSEIYWPNGLTLDYEEQ-- 178 (318)
T ss_dssp CS-----C--EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE-E--ECSSCSCEEEEEEETTTT--
T ss_pred Cc-----E--EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE-E--EECCCCCccEEEEeccCC--
Confidence 21 1 1111123345688999997666666653 5788888876433221 1 111234568999998662
Q ss_pred CccEEEEeecCCcEEEEEeee
Q 037555 213 NHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 213 ~~~~l~~g~~dg~i~vwd~~~ 233 (298)
.+.++-...+.|..+++..
T Consensus 179 --~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 179 --KLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp --EEEEEETTTTEEEEEETTS
T ss_pred --EEEEEECCCCEEEEEcCCC
Confidence 4445545667899988764
No 267
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=98.14 E-value=0.00079 Score=53.10 Aligned_cols=166 Identities=7% Similarity=0.034 Sum_probs=105.2
Q ss_pred ccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeee-cccc----c--cccEEEEEE---cCCCCEEEEEe
Q 037555 53 YGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMG-RLQS----H--SLTVTQIRF---SHDDNLLLSVS 122 (298)
Q Consensus 53 ~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~-~~~~----~--~~~v~~~~~---~~~~~~l~~~~ 122 (298)
.....-..+++|.+....|..++ -..+.|..|+...+.... .+.. . ...+..+.| .|+++++++..
T Consensus 9 ~~~~~yPE~~~wd~~~g~~~vs~----l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~ 84 (334)
T 2p9w_A 9 KVKNLTPEDTIYDRTRQVFYQSN----LYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMK 84 (334)
T ss_dssp CCTTCCCSCEEEETTTTEEEEEE----TTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEE
T ss_pred cCcccCCcCccCcCCCCEEEEEe----ccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEc
Confidence 33344455889988666666664 357999999997553322 2332 1 124689999 68877777544
Q ss_pred -------------CCCeEEEEEec---cCCCCccceeeeEEeecc-----------CCceEEEEEccCCCEEEEeeCC-C
Q 037555 123 -------------RDRQFSVFAIQ---RTGTGEIDYQLIARQEAH-----------KRIIWSCSWNPFGHEFATGSRD-K 174 (298)
Q Consensus 123 -------------~dg~i~iwd~~---~~~~~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~l~~~~~d-g 174 (298)
.+..|..||+. +... .....+... ......++..++|+..++++.. +
T Consensus 85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~-----~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~ 159 (334)
T 2p9w_A 85 NAKSFNFADQSSHGASSFHSFNLPLSENSKP-----VWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMP 159 (334)
T ss_dssp ETTTTCTTSCCSSSCCEEEEEESSCCTTCCC-----SEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSC
T ss_pred ccccccccccccCCCCEEEEEcCCcCCCCCE-----EEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCC
Confidence 26789999988 4321 111111111 1247899999999999998888 8
Q ss_pred eEEEEEccCCcceeeee-ec--CCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555 175 TVKIWAVENKSSVKQIL-AL--PPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 175 ~i~~wd~~~~~~~~~~~-~~--~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 233 (298)
.|...+..... ..... .. .......+.|+++|++ ..|++....|.|..+|+..
T Consensus 160 ~I~rV~pdG~~-~~~~~~~~~~~~~~~G~nGIv~~pdg-----~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 160 AIARVSADGKT-VSTFAWESGNGGQRPGYSGITFDPHS-----NKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEECTTSCC-EEEEEECCCCSSSCCSCSEEEEETTT-----TEEEEESSSSSEEEEECSS
T ss_pred eEEEEeCCCCE-EeeeeecCCCcccccCcceEEEeCCC-----CEEEEEcCCCeEEEEcCCC
Confidence 87777766442 22111 11 1112336799999998 5666665699999999873
No 268
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.11 E-value=0.002 Score=51.17 Aligned_cols=182 Identities=9% Similarity=-0.056 Sum_probs=103.0
Q ss_pred ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEE-EEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEE
Q 037555 82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLL-LSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW 160 (298)
Q Consensus 82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 160 (298)
...|+..++.+.+....+. .......++|++.+..| ++-...+.|..+++....... .....+...-.....+++
T Consensus 9 ~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~---~~~~~~~~~~~~p~glav 84 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS---SYDTVISRDIQAPDGLAV 84 (316)
T ss_dssp BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSCSCCCEEEE
T ss_pred CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCc---ccEEEEeCCCCCcCEEEE
Confidence 4568999998766544444 33457899999866544 444557899999876411000 001112212234578889
Q ss_pred ccCCCEEE-EeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecC-CcEEEEEeeeccccc
Q 037555 161 NPFGHEFA-TGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMES-GVIELWSISVNRTND 238 (298)
Q Consensus 161 ~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~d-g~i~vwd~~~~~~~~ 238 (298)
.+.+..|+ +-...+.|.+.|+....... +.. ........+++.|.+. .++++.... +.|..+++...
T Consensus 85 d~~~~~ly~~d~~~~~I~~~~~~g~~~~~-~~~--~~~~~P~~iavdp~~g----~ly~~d~~~~~~I~~~~~dG~---- 153 (316)
T 1ijq_A 85 DWIHSNIYWTDSVLGTVSVADTKGVKRKT-LFR--ENGSKPRAIVVDPVHG----FMYWTDWGTPAKIKKGGLNGV---- 153 (316)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSSSEEE-EEE--CTTCCEEEEEEETTTT----EEEEEECSSSCEEEEEETTSC----
T ss_pred eecCCeEEEEECCCCEEEEEeCCCCceEE-EEE--CCCCCcceEEeCCCCC----EEEEEccCCCCeEEEEcCCCC----
Confidence 87555554 44567889999987543222 211 1234578999998652 344443333 67777776432
Q ss_pred ccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 239 VSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
. ...+.. ..-...+.|++++++. .++++-+..+.|..+|+
T Consensus 154 ---------~-~~~~~~--~~~~~P~gla~d~~~~------~lY~~D~~~~~I~~~d~ 193 (316)
T 1ijq_A 154 ---------D-IYSLVT--ENIQWPNGITLDLLSG------RLYWVDSKLHSISSIDV 193 (316)
T ss_dssp ---------C-EEEEEC--SSCSCEEEEEEETTTT------EEEEEETTTTEEEEEET
T ss_pred ---------C-eEEEEE--CCCCCceEEEEeccCC------EEEEEECCCCeEEEEec
Confidence 1 111110 1234567899998762 45555556667777765
No 269
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=98.08 E-value=0.0008 Score=54.77 Aligned_cols=153 Identities=16% Similarity=0.071 Sum_probs=96.5
Q ss_pred cCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccc----cccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCcc
Q 037555 65 DHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSH----SLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEI 140 (298)
Q Consensus 65 s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 140 (298)
+.+|..++.+- ++.||.-++......+.+... -..|..+..+|+|++|+..+ +..|.|..+..+.....
T Consensus 29 ~~n~t~i~~a~------~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~ 101 (452)
T 3pbp_A 29 SQNGTRIVFIQ------DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVE 101 (452)
T ss_dssp ETTTTEEEEEE------TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCC
T ss_pred EcCCCEEEEEE------CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCc
Confidence 45666666662 678888887643333333321 12577899999999999887 56899998874332111
Q ss_pred c-----eeeeEEeec------cCCceEEEEEccC---CCEEEEeeCCCeEEEEEccCCcce-eeee------ecCCCCCc
Q 037555 141 D-----YQLIARQEA------HKRIIWSCSWNPF---GHEFATGSRDKTVKIWAVENKSSV-KQIL------ALPPFNSS 199 (298)
Q Consensus 141 ~-----~~~~~~~~~------~~~~v~~~~~~~~---~~~l~~~~~dg~i~~wd~~~~~~~-~~~~------~~~~~~~~ 199 (298)
. ....+.+.- ...+|..+.|+|- +..|++-..|+.|++||+...... ..+. .+......
T Consensus 102 ~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~e 181 (452)
T 3pbp_A 102 DVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVND 181 (452)
T ss_dssp CHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCC
T ss_pred ccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccce
Confidence 0 011122221 2567999999994 468999999999999999862211 1110 11222366
Q ss_pred eEEEEEeeccccCCccEEEE--eecCCcEEEE
Q 037555 200 VTALSWVGLDRQKNHGFLAV--GMESGVIELW 229 (298)
Q Consensus 200 v~~~~~~~~~~~~~~~~l~~--g~~dg~i~vw 229 (298)
|.+++|.+++ -.|.. .+..|.|+-.
T Consensus 182 v~S~~Fg~~~-----lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 182 ITDLEFSKDG-----LTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEEECTTS-----SCEEEEECTTSCEEEEE
T ss_pred EEEEEEcCCC-----cEEEEEecCCCCCEEEE
Confidence 8899999866 45555 4477887644
No 270
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.05 E-value=0.0062 Score=54.54 Aligned_cols=163 Identities=7% Similarity=-0.114 Sum_probs=98.0
Q ss_pred cCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCc----eeeeccccccccEEEEEEcCCCC-EEEEEeCCCeEE
Q 037555 54 GHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSW----KAMGRLQSHSLTVTQIRFSHDDN-LLLSVSRDRQFS 128 (298)
Q Consensus 54 ~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~ 128 (298)
.....+..|+|++....|+.+. ...+.|+.+++... .....+.........|++.+.+. ++++-...+.|.
T Consensus 421 ~~~~~~~gl~~d~~~~~lY~sD----~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~ 496 (791)
T 3m0c_C 421 PNLRNVVALDTEVASNRIYWSD----LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVS 496 (791)
T ss_dssp CSCSSEEEEEEETTTTEEEEEE----TTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred cCCCceEEEeecccCCeeEEee----ccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEE
Confidence 3445678999998666555553 34678988888642 12222332334566788887664 555556678899
Q ss_pred EEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC--CCeEEEEEccCCcceeeeeecCCCCCceEEEEEe
Q 037555 129 VFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR--DKTVKIWAVENKSSVKQILALPPFNSSVTALSWV 206 (298)
Q Consensus 129 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~ 206 (298)
+.++.... ....+.........|++.|...+|+.... .+.|...++....... .+...-.....|++.
T Consensus 497 v~~ldG~~-------~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~---lv~~~l~~P~GLavD 566 (791)
T 3m0c_C 497 VADTKGVK-------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS---LVTENIQWPNGITLD 566 (791)
T ss_dssp EEETTSSS-------EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE---EECSSCSCEEEEEEE
T ss_pred EEeCCCCe-------EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE---EEeCCCCCceEEEEe
Confidence 99887421 11112223345789999997666666653 2678888887544322 122233567899999
Q ss_pred eccccCCccEEEEeecCCcEEEEEeeec
Q 037555 207 GLDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 207 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
+... .++++-.....|..+++...
T Consensus 567 ~~~~----~LYwaD~~~~~I~~~d~dG~ 590 (791)
T 3m0c_C 567 LLSG----RLYWVDSKLHSISSIDVNGG 590 (791)
T ss_dssp TTTT----EEEEEETTTTEEEEEETTSC
T ss_pred cCCC----eEEEEeCCCCcEEEEecCCC
Confidence 7762 34444345567888887543
No 271
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.04 E-value=0.00028 Score=63.10 Aligned_cols=115 Identities=10% Similarity=0.053 Sum_probs=71.2
Q ss_pred cEEEEEEc-CCCCEEEEEeC-CC----eEEEEEeccC-CCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC----
Q 037555 105 TVTQIRFS-HDDNLLLSVSR-DR----QFSVFAIQRT-GTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD---- 173 (298)
Q Consensus 105 ~v~~~~~~-~~~~~l~~~~~-dg----~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---- 173 (298)
.+...+|+ |||++|+-+.. +| .|+++|+..+ ... ...+. .....+.|+|+++.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l------~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~ 245 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI------ADKVS---GTNGEIVWGPDHTSLFYVTKDETLR 245 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC------CCCEE---EECSCCEECSSTTEEEEEEECTTCC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC------Ccccc---CceeeEEEecCCCEEEEEEECCCCC
Confidence 67889999 99998775433 33 5999998864 210 00111 113468899999888777654
Q ss_pred -CeEEEEEccCCccee-eeeecCCCCCceEEEEEeeccccCCccEEEEeec---CCcEEEEEeeec
Q 037555 174 -KTVKIWAVENKSSVK-QILALPPFNSSVTALSWVGLDRQKNHGFLAVGME---SGVIELWSISVN 234 (298)
Q Consensus 174 -g~i~~wd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~---dg~i~vwd~~~~ 234 (298)
..|..+++.+..... .+.... .......+.|+|++ .+|+.... ...|+++|+.++
T Consensus 246 ~~~v~~~~lgt~~~~~~lv~~~~-~~~~~~~~~~SpDg-----~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 246 ENKVWRHVMGKLQSEDVCLYEEH-NPLFSAFMYKAADT-----NTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEEEEEETTSCGGGCEEEEECC-CTTCEEEEEECTTS-----SEEEEEEECSSCEEEEEEESSSC
T ss_pred CCEEEEEECCCCchhcEEEEecC-CCceEEEEEECCCC-----CEEEEEecCCCCceEEEEECCCC
Confidence 257888887654321 111112 23346688999998 56655442 346777777654
No 272
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.04 E-value=0.0023 Score=52.63 Aligned_cols=181 Identities=9% Similarity=-0.048 Sum_probs=103.3
Q ss_pred ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEE-eCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEE
Q 037555 82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSV-SRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW 160 (298)
Q Consensus 82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 160 (298)
...|+..++........+. ....+..++|++.+..|..+ ...+.|..+++...... ................+++
T Consensus 91 ~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~---~~~~~~~~~~~~~p~glav 166 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---SSYDTVISRDIQAPDGLAV 166 (400)
T ss_dssp TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC---------CCCEEEECSSCSCEEEEEE
T ss_pred cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC---CcceEEEeCCCCCcccEEE
Confidence 5689999988655443333 34567899999865555544 45788888887642100 0111222223345678999
Q ss_pred ccCCCEEE-EeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee-c-CCcEEEEEeeecccc
Q 037555 161 NPFGHEFA-TGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM-E-SGVIELWSISVNRTN 237 (298)
Q Consensus 161 ~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~-~-dg~i~vwd~~~~~~~ 237 (298)
.+.+..|+ +-...+.|.+.++....... + +.........+++.|.+ ..|+... . .+.|...++....
T Consensus 167 D~~~~~lY~~d~~~~~I~~~~~~g~~~~~-l--~~~~~~~P~~iavdp~~-----g~ly~td~~~~~~I~~~~~dG~~-- 236 (400)
T 3p5b_L 167 DWIHSNIYWTDSVLGTVSVADTKGVKRKT-L--FRENGSKPRAIVVDPVH-----GFMYWTDWGTPAKIKKGGLNGVD-- 236 (400)
T ss_dssp ETTTTEEEEEETTTTEEEEECTTTCSEEE-E--EECSSCCEEEEEEETTT-----TEEEEEECSSSCCEEEEETTSCS--
T ss_pred EecCCceEEEECCCCeEEEEeCCCCceEE-E--EeCCCCCcceEEEeccc-----CeEEEEeCCCCCEEEEEeCCCCc--
Confidence 88554444 44567889999987654322 1 11233457899999965 3444443 2 3677777765431
Q ss_pred cccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 238 DVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
....+. ..-...+.|++++++. .++++-...+.|..+|+
T Consensus 237 -----------~~~~~~---~~l~~P~glavd~~~~------~lY~aD~~~~~I~~~d~ 275 (400)
T 3p5b_L 237 -----------IYSLVT---ENIQWPNGITLDLLSG------RLYWVDSKLHSISSIDV 275 (400)
T ss_dssp -----------CEEEEC---SSCSCEEEEEEETTTT------EEEEEETTTTEEEEEET
T ss_pred -----------cEEEEE---CCCCceEEEEEEeCCC------EEEEEECCCCEEEEEeC
Confidence 111111 1224567889997662 44444445566776664
No 273
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.03 E-value=0.003 Score=50.16 Aligned_cols=178 Identities=11% Similarity=0.021 Sum_probs=102.6
Q ss_pred ceEEEEEEcCCce--eeeccccccccEEEEEEcCCCC-EEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEE
Q 037555 82 AAEIWLWEVGSWK--AMGRLQSHSLTVTQIRFSHDDN-LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSC 158 (298)
Q Consensus 82 d~~i~vw~~~~~~--~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~ 158 (298)
...|+..++.... ....+. ....+..+.|++.+. ++.+-...+.|..+++..... ........-.....+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~------~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES------VQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC------CCEEEEECCSCCCEE
T ss_pred cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc------eEEEEcCCCCCccEE
Confidence 5789999998653 112222 234567899998544 445555678888888765321 011111122345678
Q ss_pred EEccCCCEEE-EeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee--cCCcEEEEEeeecc
Q 037555 159 SWNPFGHEFA-TGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM--ESGVIELWSISVNR 235 (298)
Q Consensus 159 ~~~~~~~~l~-~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~--~dg~i~vwd~~~~~ 235 (298)
++.+.+..|+ +-...+.|.++++....... + ..........+++.|.+ ..|+... ..+.|...++...
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~~-l--~~~~~~~P~giavdp~~-----g~ly~td~~~~~~I~r~~~dG~- 155 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRKV-L--FWQELDQPRAIALDPSS-----GFMYWTDWGEVPKIERAGMDGS- 155 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCEE-E--ECSSCSSEEEEEEEGGG-----TEEEEEECSSSCEEEEEETTSC-
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcEEE-E--EeCCCCCccEEEEeCCC-----CEEEEEecCCCCEEEEEEcCCC-
Confidence 8887555454 44557889999987543222 1 22234557899999876 3555444 2467777776532
Q ss_pred cccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 236 TNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
.....+. ..-...+.|++++++. .++++-+..+.|..+++
T Consensus 156 ------------~~~~~~~---~~l~~Pnglavd~~~~------~lY~aD~~~~~I~~~d~ 195 (318)
T 3sov_A 156 ------------SRFIIIN---SEIYWPNGLTLDYEEQ------KLYWADAKLNFIHKSNL 195 (318)
T ss_dssp ------------SCEEEEC---SSCSCEEEEEEETTTT------EEEEEETTTTEEEEEET
T ss_pred ------------CeEEEEE---CCCCCccEEEEeccCC------EEEEEECCCCEEEEEcC
Confidence 1111111 1123467899998652 45555556677777765
No 274
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.02 E-value=0.00023 Score=62.74 Aligned_cols=100 Identities=9% Similarity=0.047 Sum_probs=64.6
Q ss_pred ceEEEEEEcCCceeeeccccc---c----------------------------ccEEEEEEcCCCCEEEEEeCCCe----
Q 037555 82 AAEIWLWEVGSWKAMGRLQSH---S----------------------------LTVTQIRFSHDDNLLLSVSRDRQ---- 126 (298)
Q Consensus 82 d~~i~vw~~~~~~~~~~~~~~---~----------------------------~~v~~~~~~~~~~~l~~~~~dg~---- 126 (298)
++.|..+|..+|+.+-.+... . .....+++.|+..+++.++.++.
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~ 256 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR 256 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence 689999999999887655311 0 01123678887788888877663
Q ss_pred ---------------EEEEEeccCCCCccceeeeEEeec--cC-------CceEEEEEccCCC---EEEEeeCCCeEEEE
Q 037555 127 ---------------FSVFAIQRTGTGEIDYQLIARQEA--HK-------RIIWSCSWNPFGH---EFATGSRDKTVKIW 179 (298)
Q Consensus 127 ---------------i~iwd~~~~~~~~~~~~~~~~~~~--~~-------~~v~~~~~~~~~~---~l~~~~~dg~i~~w 179 (298)
|..+|..++ +.+-.+.. |. .+.....+..+++ .++.++.+|.++++
T Consensus 257 ~~~~~~~gd~l~~~~v~AlD~~tG-------~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~l 329 (668)
T 1kv9_A 257 EVRSPGGGDNLYLSSILAIRPDTG-------KLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVL 329 (668)
T ss_dssp HHHSTTCCCCTTTTEEEEECTTTC-------CEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred CCCCCCCCCceeeeeEEEEcCCCC-------ceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEE
Confidence 777887763 22322221 21 2222223333554 68899999999999
Q ss_pred EccCCccee
Q 037555 180 AVENKSSVK 188 (298)
Q Consensus 180 d~~~~~~~~ 188 (298)
|.++++.+.
T Consensus 330 D~~tG~~l~ 338 (668)
T 1kv9_A 330 DRTNGKLIS 338 (668)
T ss_dssp ETTTCCEEE
T ss_pred ECCCCCEec
Confidence 999988764
No 275
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=98.01 E-value=5.1e-05 Score=67.10 Aligned_cols=159 Identities=8% Similarity=-0.086 Sum_probs=92.8
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC----ceeeeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEE
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS----WKAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFA 131 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~----~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd 131 (298)
..+..++|++.+..|+.+. ...+.|+.+++.. ......+.........+++.+ .++++++-...+.|.+++
T Consensus 406 ~~p~gla~d~~~~~Ly~sD----~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d 481 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSD----LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD 481 (699)
T ss_dssp TTCCCCEEETTTTEEEECC----TTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEB
T ss_pred cceEEEccccccCeEEEEe----cCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEe
Confidence 4566889998777776663 2357899999875 222222221222345688875 445555555678898888
Q ss_pred eccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-C-CeEEEEEccCCcceeeeeecCCCCCceEEEEEeecc
Q 037555 132 IQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-D-KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLD 209 (298)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (298)
+... .....+.........++++|.+.+|+.+.. . +.|..+++....... .....-.....|+|+|.+
T Consensus 482 ~dg~-------~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~---l~~~~l~~PnGlavd~~~ 551 (699)
T 1n7d_A 482 TKGV-------KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS---LVTENIQWPNGITLDLLS 551 (699)
T ss_dssp SSSC-------CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE---ESCSSCSSCCCEEECTTT
T ss_pred cCCC-------ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE---EEeCCCCCccEEEEeccC
Confidence 7642 111111212234577899997666655543 2 678887776433221 111122446789999876
Q ss_pred ccCCccEEEEeecCCcEEEEEeee
Q 037555 210 RQKNHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 210 ~~~~~~~l~~g~~dg~i~vwd~~~ 233 (298)
. .++++-...+.|.++++..
T Consensus 552 ~----~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 552 G----RLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp C----CEEEEETTTTEEEEECSSS
T ss_pred C----EEEEEecCCCeEEEEccCC
Confidence 2 4555555667899998864
No 276
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.99 E-value=0.0086 Score=53.97 Aligned_cols=177 Identities=11% Similarity=0.037 Sum_probs=109.6
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc--------cccccEEEEEEcCCCCEEEEEeCCCeEE
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ--------SHSLTVTQIRFSHDDNLLLSVSRDRQFS 128 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 128 (298)
..|.++...++|.+-+.. .++-|..|+..+++...... .....|.++...+++++|..|+.++-|.
T Consensus 357 ~~V~~i~~d~~g~lWiGt------~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~ 430 (795)
T 4a2l_A 357 NVVSCIVEDKDKNLWIGT------NDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLS 430 (795)
T ss_dssp SSEEEEEECTTSCEEEEE------SSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEE
T ss_pred CeeEEEEECCCCCEEEEE------CCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCcee
Confidence 469999998888765543 25568899987654432211 1235789999988888566677777789
Q ss_pred EEEeccCCCCccceeeeEEee-----ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeec----CCCCCc
Q 037555 129 VFAIQRTGTGEIDYQLIARQE-----AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILAL----PPFNSS 199 (298)
Q Consensus 129 iwd~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----~~~~~~ 199 (298)
.+|..+.. ...+. .....|.++...+++++.+.. .+| |.+||..+.+... +... ......
T Consensus 431 ~~d~~~~~--------~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G-l~~~~~~~~~~~~-~~~~~~~~~~~~~~ 499 (795)
T 4a2l_A 431 ILHRNSGQ--------VENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSA-LVRFNPEQRSFTT-IEKEKDGTPVVSKQ 499 (795)
T ss_dssp EEETTTCC--------EEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC-EEEEETTTTEEEE-CCBCTTCCBCCCCC
T ss_pred EEeCCCCc--------EEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCc-eeEEeCCCCeEEE-ccccccccccCCce
Confidence 99977532 11111 134578899888877755544 444 8889987654322 1111 012356
Q ss_pred eEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeec----cCCcccceEEEEEeecCC
Q 037555 200 VTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFD----PFACHVAAVNRMAWKTHE 272 (298)
Q Consensus 200 v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~~~~ 272 (298)
|.++...+++ . |..|+. +-|..|+..+.. . .+. ........|.++...+++
T Consensus 500 i~~i~~d~~g-----~-lWigt~-~Gl~~~~~~~~~-------------~--~~~~~~~~~~l~~~~i~~i~~d~~g 554 (795)
T 4a2l_A 500 ITTLFRDSHK-----R-LWIGGE-EGLSVFKQEGLD-------------I--QKASILPVSNVTKLFTNCIYEASNG 554 (795)
T ss_dssp EEEEEECTTC-----C-EEEEES-SCEEEEEEETTE-------------E--EECCCSCSCGGGGSCEEEEEECTTS
T ss_pred EEEEEECCCC-----C-EEEEeC-CceEEEeCCCCe-------------E--EEecCCCCCCCCCCeeEEEEECCCC
Confidence 8888888776 3 444555 458888887542 1 111 011234578888888887
No 277
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.98 E-value=0.0036 Score=49.36 Aligned_cols=159 Identities=9% Similarity=0.029 Sum_probs=88.0
Q ss_pred CCceEEEEEcCCCCEEEeEeccCCCCc-eEEEEEEcCCceeeeccc-cccccEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555 56 GNELFSLCCDHQGKLVASSCKAQSTAA-AEIWLWEVGSWKAMGRLQ-SHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQ 133 (298)
Q Consensus 56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d-~~i~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 133 (298)
...+..+++.++|+++++... .+ ..|..++..+++...... ........++..+++..+++-..++.|.++|..
T Consensus 71 ~~~p~gia~~~dG~l~vad~~----~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~ 146 (306)
T 2p4o_A 71 EGKVSGLAFTSNGDLVATGWN----ADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVV 146 (306)
T ss_dssp SSEEEEEEECTTSCEEEEEEC----TTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETT
T ss_pred CCCceeEEEcCCCcEEEEecc----CCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCC
Confidence 346889999999996665421 12 357777777665432221 111223445555555445554468888888865
Q ss_pred cCCCCccceeeeE--------EeeccCCceEEEEEccCCCEEEEee-CCCeEEEEEccC-CcceeeeeecCCCCCceEEE
Q 037555 134 RTGTGEIDYQLIA--------RQEAHKRIIWSCSWNPFGHEFATGS-RDKTVKIWAVEN-KSSVKQILALPPFNSSVTAL 203 (298)
Q Consensus 134 ~~~~~~~~~~~~~--------~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~ 203 (298)
... ..... .....-.....+ +|+++.|+.+. ..+.|..+|+.. +.. .....+. .......+
T Consensus 147 ~~~-----~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~-~~~~~~~-~~~~P~gi 217 (306)
T 2p4o_A 147 QPS-----GSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP-GEPEIFV-EQTNIDDF 217 (306)
T ss_dssp TTE-----EEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCB-CCCEEEE-ESCCCSSE
T ss_pred CCc-----EeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC-CccEEEe-ccCCCCCe
Confidence 311 01110 000011223445 77887665554 568899999875 221 1000111 11235668
Q ss_pred EEeeccccCCccEEEEeecCCcEEEEEee
Q 037555 204 SWVGLDRQKNHGFLAVGMESGVIELWSIS 232 (298)
Q Consensus 204 ~~~~~~~~~~~~~l~~g~~dg~i~vwd~~ 232 (298)
++.+++ .++++....+.|.+++..
T Consensus 218 ~vd~dG-----~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 218 AFDVEG-----NLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp EEBTTC-----CEEEECBTTCCEEEECTT
T ss_pred EECCCC-----CEEEEeCCCCeEEEECCC
Confidence 888887 676666667889998864
No 278
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.98 E-value=0.00073 Score=59.47 Aligned_cols=119 Identities=11% Similarity=0.154 Sum_probs=74.5
Q ss_pred EEEEcC-CCCEEEeEeccCCC------CceEEEEEEcCCceeee--ccc-cccccEEEEEEcCCCCEEEEEeC-CCeEEE
Q 037555 61 SLCCDH-QGKLVASSCKAQST------AAAEIWLWEVGSWKAMG--RLQ-SHSLTVTQIRFSHDDNLLLSVSR-DRQFSV 129 (298)
Q Consensus 61 ~~~~s~-~~~~l~~~~~~~~~------~d~~i~vw~~~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~~-dg~i~i 129 (298)
++++.+ ++++++.|+.+... ....+.+||..+++... .+. .+.....++++..++++++.|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 566677 88888888753210 11368899998765332 221 12333445677889999999884 568999
Q ss_pred EEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee-CC-----CeEEEEEccCCc
Q 037555 130 FAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS-RD-----KTVKIWAVENKS 185 (298)
Q Consensus 130 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d-----g~i~~wd~~~~~ 185 (298)
||..+.. +..+..+.. ...-.+++..++++.++.|+ .+ ..+.+||..+.+
T Consensus 270 yd~~t~~-----W~~~~~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 270 YDSSSDS-----WIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp EEGGGTE-----EEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred ecCcCCc-----eeECCCCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 9987642 333322221 12223455667888888888 34 468999987654
No 279
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.97 E-value=0.0053 Score=51.03 Aligned_cols=228 Identities=7% Similarity=-0.029 Sum_probs=113.9
Q ss_pred EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee-eeccccccccEEEEEEcC-CCCEEEEEeCCCeE
Q 037555 50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA-MGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQF 127 (298)
Q Consensus 50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i 127 (298)
..+.........++++++|+++++-.... .....+...+...+.. ...+. .-.....++++| ++.++++-..++.|
T Consensus 175 ~~~~~~~~~P~giavd~dG~lyVad~~~~-~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V 252 (433)
T 4hw6_A 175 DIKTTNIGQCADVNFTLNGDMVVVDDQSS-DTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMI 252 (433)
T ss_dssp EEECCCCSCEEEEEECTTCCEEEEECCSC-TTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEE
T ss_pred EEeecCCCCccEEEECCCCCEEEEcCCCC-cccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEE
Confidence 33434445688999999999444442100 0012233333321111 01111 123346688999 67766666677889
Q ss_pred EEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee-CCCeEEEEEccC--Ccc--eeeeeecCC-------
Q 037555 128 SVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS-RDKTVKIWAVEN--KSS--VKQILALPP------- 195 (298)
Q Consensus 128 ~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~--~~~--~~~~~~~~~------- 195 (298)
+.++...... ...+.... ....-..++|+|++++|+.+. ..+.|+.++... +.. ...+....+
T Consensus 253 ~~~d~~~g~~----~~~~~~~~-~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg 327 (433)
T 4hw6_A 253 SSYDPATGTL----TEEEVMMD-TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDG 327 (433)
T ss_dssp EEECTTTCCE----EEEEEECS-CCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCE
T ss_pred EEEECCCCeE----EEEEeccC-CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCC
Confidence 8888764210 01111111 112234699999998665554 567899988653 211 011111000
Q ss_pred -----CCCceEEEEE---------eeccccCCccEEEEeecCCcEEEEEeeecccccccCCCC-CCcceeeeeccCCccc
Q 037555 196 -----FNSSVTALSW---------VGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAP-STANIIIRFDPFACHV 260 (298)
Q Consensus 196 -----~~~~v~~~~~---------~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 260 (298)
.-.....+++ .+.+ .++++-...+.|+.++.. +.......... .......-.......-
T Consensus 328 ~~~~a~~~~P~giav~~n~~y~~dd~~g-----~lyvaD~~n~~I~~~~~~-G~v~t~~G~g~~~~~G~~dG~~~~~~~~ 401 (433)
T 4hw6_A 328 MGTGARLWGPNQGIFVKNEAYAGEEDEY-----DFYFCDRDSHTVRVLTPE-GRVTTYAGRGNSREWGYVDGELRSQALF 401 (433)
T ss_dssp EGGGSBCSSEEEEEEEECGGGTTSSCCE-----EEEEEETTTTEEEEECTT-SEEEEEECCCTTCSSCCBCEETTTTCBC
T ss_pred cccceEEcCCccEEEEccccccccCCCC-----cEEEEECCCCEEEEECCC-CCEEEEEeCCCCCccccCCCccccccEe
Confidence 1123567888 4444 555555566788888742 21100000000 0000000000000112
Q ss_pred ceEEEEEee-cCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 261 AAVNRMAWK-THEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 261 ~~v~~~~~~-~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.....|+++ +++ .++++-.....|+.++++
T Consensus 402 ~~P~giavd~~~g-------~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 402 NHPTSIAYDMKRK-------CFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp SSEEEEEEETTTT-------EEEEEEGGGTEEEEEEEC
T ss_pred CCCcEEEEECCCC-------EEEEEeCCCCEEEEEecC
Confidence 346789999 666 777777778889988764
No 280
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.96 E-value=0.0059 Score=55.02 Aligned_cols=179 Identities=12% Similarity=0.068 Sum_probs=105.8
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc----cccccEEEEEEcCCCCEEEEEeCCCeEEEEEe
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ----SHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAI 132 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 132 (298)
..|.++...+++..|..|. .++-|.++|..+++...... .....|.++...+++++.+... + -+.+|+.
T Consensus 406 ~~v~~i~~d~~g~~lWigt-----~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~ 478 (795)
T 4a2l_A 406 NNIKAVYVDEKKSLVYIGT-----HAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-S-ALVRFNP 478 (795)
T ss_dssp SCEEEEEEETTTTEEEEEE-----TTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-S-CEEEEET
T ss_pred ccEEEEEEcCCCCEEEEEe-----CcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-C-ceeEEeC
Confidence 5689999988898455553 24569999988765432211 2345789999988887665544 4 4777887
Q ss_pred ccCCCCccceeeeEEe----eccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeec----CCCCCceEEEE
Q 037555 133 QRTGTGEIDYQLIARQ----EAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILAL----PPFNSSVTALS 204 (298)
Q Consensus 133 ~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----~~~~~~v~~~~ 204 (298)
.+.. ....... ......|.++...++++..+... +-|..||..+.+. . +... ......|.++.
T Consensus 479 ~~~~-----~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~-~-~~~~~~~~~l~~~~i~~i~ 549 (795)
T 4a2l_A 479 EQRS-----FTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI-Q-KASILPVSNVTKLFTNCIY 549 (795)
T ss_dssp TTTE-----EEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE-E-ECCCSCSCGGGGSCEEEEE
T ss_pred CCCe-----EEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE-E-EecCCCCCCCCCCeeEEEE
Confidence 6421 1111100 11235688998888887665544 4488888876543 1 1110 01234688888
Q ss_pred EeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCc-ccceEEEEEeecCC
Q 037555 205 WVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFAC-HVAAVNRMAWKTHE 272 (298)
Q Consensus 205 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~ 272 (298)
..+++ . |..|+.. -|..||..+. ....+....+ ....|.++...+++
T Consensus 550 ~d~~g-----~-lWigT~~-Gl~~~d~~~~--------------~~~~~~~~~gl~~~~i~~i~~d~~g 597 (795)
T 4a2l_A 550 EASNG-----I-IWVGTRE-GFYCFNEKDK--------------QIKRYNTTNGLPNNVVYGILEDSFG 597 (795)
T ss_dssp ECTTS-----C-EEEEESS-CEEEEETTTT--------------EEEEECGGGTCSCSCEEEEEECTTS
T ss_pred ECCCC-----C-EEEEeCC-CceeECCCCC--------------cEEEeCCCCCCchhheEEEEECCCC
Confidence 88776 3 4445544 4778886543 1122211111 23457788877777
No 281
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.92 E-value=0.00083 Score=52.96 Aligned_cols=164 Identities=10% Similarity=0.053 Sum_probs=98.5
Q ss_pred ccEEEEEEcCCCCEEEEEe-CCCeEEEEEeccCCCCccceeeeEEeec----c--CCceEEEEE---ccCCCEEEEee--
Q 037555 104 LTVTQIRFSHDDNLLLSVS-RDRQFSVFAIQRTGTGEIDYQLIARQEA----H--KRIIWSCSW---NPFGHEFATGS-- 171 (298)
Q Consensus 104 ~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~--~~~v~~~~~---~~~~~~l~~~~-- 171 (298)
..-.+++|++....|..++ ..+.|..|+..... ...+ .+.. . ...+..|.| .|+++++++..
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~-----~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~ 86 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQS-----HFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA 86 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCC-----EEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCe-----EEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence 3345788988555555555 78999999986321 1112 2221 0 124578999 68877776543
Q ss_pred -----------CCCeEEEEEcc---CCcceeeeeecCC-----------CCCceEEEEEeeccccCCccEEEEeecC-Cc
Q 037555 172 -----------RDKTVKIWAVE---NKSSVKQILALPP-----------FNSSVTALSWVGLDRQKNHGFLAVGMES-GV 225 (298)
Q Consensus 172 -----------~dg~i~~wd~~---~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~~~~~~l~~g~~d-g~ 225 (298)
.+..|..||+. +++..... .+.. .......++..+++ +..++++.. +.
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~G-----naYVt~s~~~~~ 160 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDG-----NSYVAFALGMPA 160 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTS-----CEEEEEEESSCE
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCC-----CEEEeCCCCCCe
Confidence 26779999998 66655422 2221 11247789999988 777777777 76
Q ss_pred EEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 226 IELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 226 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
|..++...... .....-.+........+.|+++|++ ..|+.....+.|..+|++
T Consensus 161 I~rV~pdG~~~-----------~~~~~~~~~~~~~~G~nGIv~~pdg-------~~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 161 IARVSADGKTV-----------STFAWESGNGGQRPGYSGITFDPHS-------NKLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EEEECTTSCCE-----------EEEEECCCCSSSCCSCSEEEEETTT-------TEEEEESSSSSEEEEECS
T ss_pred EEEEeCCCCEE-----------eeeeecCCCcccccCcceEEEeCCC-------CEEEEEcCCCeEEEEcCC
Confidence 65555442200 0000000011123346789999999 666666669999888863
No 282
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.91 E-value=0.0011 Score=58.32 Aligned_cols=85 Identities=12% Similarity=0.069 Sum_probs=52.6
Q ss_pred CCCceEEecc-CCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeec--cccccccEEEEEEcCCCCEEEEE
Q 037555 45 LWPESHKLYG-HGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR--LQSHSLTVTQIRFSHDDNLLLSV 121 (298)
Q Consensus 45 ~~~~~~~~~~-h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~ 121 (298)
.|..+..+.. +.....++++..++++++.|+. .+..+.+||..+.+-... +... ..-.+++..+++++++.|
T Consensus 230 ~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~----~~~~v~~yd~~t~~W~~~~~~~~~-R~~~s~~~~~dg~iyv~G 304 (656)
T 1k3i_A 230 IVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGN----DAKKTSLYDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIG 304 (656)
T ss_dssp CBCCCEEEECSCCCSSCEEEECTTSCEEEECSS----STTCEEEEEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEEC
T ss_pred cEEeCcccCCCCCCccccccCCCCCCEEEeCCC----CCCceEEecCcCCceeECCCCCcc-ccccceEEecCCeEEEEe
Confidence 3444444322 2233445777889999999975 245799999887653322 2211 112345566789999988
Q ss_pred e-CC-----CeEEEEEecc
Q 037555 122 S-RD-----RQFSVFAIQR 134 (298)
Q Consensus 122 ~-~d-----g~i~iwd~~~ 134 (298)
+ .+ ..+.+||..+
T Consensus 305 G~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 305 GSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp CCCCSSSCCCCEEEEETTT
T ss_pred CcccCCcccccceEeCCCC
Confidence 8 34 4688898765
No 283
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.91 E-value=0.0013 Score=56.81 Aligned_cols=157 Identities=11% Similarity=0.094 Sum_probs=92.7
Q ss_pred EEEEcCCCCEEEeEeccCC-------CC----ceEEEEEEcCCceeeecccc--c--------cccEEEEEEcCCCC---
Q 037555 61 SLCCDHQGKLVASSCKAQS-------TA----AAEIWLWEVGSWKAMGRLQS--H--------SLTVTQIRFSHDDN--- 116 (298)
Q Consensus 61 ~~~~s~~~~~l~~~~~~~~-------~~----d~~i~vw~~~~~~~~~~~~~--~--------~~~v~~~~~~~~~~--- 116 (298)
.+++.++...+..+..... .. .+.|..+|..+++.+-.++. | ..++. +....+|+
T Consensus 239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~ 317 (571)
T 2ad6_A 239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTP 317 (571)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEE
T ss_pred eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEE
Confidence 3566676666665532100 01 13699999999988766542 2 12221 22224674
Q ss_pred EEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccC-------------Cce--------------------------EE
Q 037555 117 LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHK-------------RII--------------------------WS 157 (298)
Q Consensus 117 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-------------~~v--------------------------~~ 157 (298)
.++.++.+|.+.++|..+++ .+-...... .++ ..
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~-------~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~ 390 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGN-------LIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGV 390 (571)
T ss_dssp EEEEECTTSEEEEEETTTCC-------EEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred EEEEeCCCcEEEEEECCCCC-------EEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCC
Confidence 57778889999999987643 221111000 111 23
Q ss_pred EEEccCCCEEEEee-------------------------------------CCCeEEEEEccCCcceeeeeecCCCCCce
Q 037555 158 CSWNPFGHEFATGS-------------------------------------RDKTVKIWAVENKSSVKQILALPPFNSSV 200 (298)
Q Consensus 158 ~~~~~~~~~l~~~~-------------------------------------~dg~i~~wd~~~~~~~~~~~~~~~~~~~v 200 (298)
++++|+..++++.. .+|.|..||..+++....... ...+
T Consensus 391 ~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~----~~~~ 466 (571)
T 2ad6_A 391 DSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE----KFAA 466 (571)
T ss_dssp CEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE----SSCC
T ss_pred ceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecC----CCCc
Confidence 56778777776653 347899999998887663322 1222
Q ss_pred EEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555 201 TALSWVGLDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 201 ~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
.+..+...+ ..++.++.|+.|+.+|.+++
T Consensus 467 ~~~~~~t~g-----g~v~~g~~dg~l~a~D~~tG 495 (571)
T 2ad6_A 467 WGGTLYTKG-----GLVWYATLDGYLKALDNKDG 495 (571)
T ss_dssp CSBCEEETT-----TEEEEECTTSEEEEEETTTC
T ss_pred cceeEEECC-----CEEEEEcCCCeEEEEECCCC
Confidence 222223333 57778899999999999888
No 284
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.88 E-value=0.0064 Score=54.66 Aligned_cols=193 Identities=13% Similarity=0.115 Sum_probs=111.9
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecc---ccccccEEEEEEcCCCCEEEEEeCCCeEEEEEec
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRL---QSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQ 133 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 133 (298)
..|.++...++|.+.+.. .++-|.+|+..+++..... ......|.++...+++.+.+ |+.++-|..++..
T Consensus 363 ~~v~~i~~d~~g~lWigt------~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~ 435 (781)
T 3v9f_A 363 KVVSSVCDDGQGKLWIGT------DGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTR 435 (781)
T ss_dssp SCEEEEEECTTSCEEEEE------BSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSS
T ss_pred cceEEEEEcCCCCEEEEe------CCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCC
Confidence 468999988888765543 2445888998765432211 12346789999888876555 5666668788765
Q ss_pred cCCCCccceeeeEEee---ccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC---CCCCceEEEEEee
Q 037555 134 RTGTGEIDYQLIARQE---AHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP---PFNSSVTALSWVG 207 (298)
Q Consensus 134 ~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~---~~~~~v~~~~~~~ 207 (298)
+. . ...+. .....|.++...+++++. .|+. +-|..+|..+.+... +.... .....|.++...+
T Consensus 436 ~~-------~-~~~~~~~~~~~~~v~~i~~d~~g~lw-igt~-~Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~ 504 (781)
T 3v9f_A 436 LK-------K-FQIIELEKNELLDVRVFYEDKNKKIW-IGTH-AGVFVIDLASKKVIH-HYDTSNSQLLENFVRSIAQDS 504 (781)
T ss_dssp SC-------E-EEECCSTTTCCCCEEEEEECTTSEEE-EEET-TEEEEEESSSSSCCE-EECTTTSSCSCSCEEEEEECT
T ss_pred CC-------c-EEEeccCCCCCCeEEEEEECCCCCEE-EEEC-CceEEEeCCCCeEEe-cccCcccccccceeEEEEEcC
Confidence 42 1 12221 134578888888777644 4555 458889987655432 11111 1135688888877
Q ss_pred ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeecc-CCcccceEEEEEeecCCCCCCCcceEEEeee
Q 037555 208 LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDP-FACHVAAVNRMAWKTHEKPKNSRTMQLASCG 286 (298)
Q Consensus 208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~ 286 (298)
.+ .|..|+.++-|..||..+. ....+.. .......|.++...+++ .+.++ +
T Consensus 505 ~g------~lWigt~~~Gl~~~~~~~~--------------~~~~~~~~~~l~~~~i~~i~~d~~g-------~lWi~-T 556 (781)
T 3v9f_A 505 EG------RFWIGTFGGGVGIYTPDMQ--------------LVRKFNQYEGFCSNTINQIYRSSKG-------QMWLA-T 556 (781)
T ss_dssp TC------CEEEEESSSCEEEECTTCC--------------EEEEECTTTTCSCSCEEEEEECTTS-------CEEEE-E
T ss_pred CC------CEEEEEcCCCEEEEeCCCC--------------eEEEccCCCCCCCCeeEEEEECCCC-------CEEEE-E
Confidence 76 3555665444777776543 1112211 11124568888887777 44333 3
Q ss_pred CCCcEEEeE
Q 037555 287 ADNTVRVFQ 295 (298)
Q Consensus 287 ~d~~i~iw~ 295 (298)
.+|.|..||
T Consensus 557 ~~Glv~~~d 565 (781)
T 3v9f_A 557 GEGLVCFPS 565 (781)
T ss_dssp TTEEEEESC
T ss_pred CCCceEEEC
Confidence 355435554
No 285
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.83 E-value=0.01 Score=49.85 Aligned_cols=162 Identities=13% Similarity=0.064 Sum_probs=96.2
Q ss_pred ceEEEEEcC-CCCEEEeEeccCCCCceEEEEEEcCCceeeecccc---ccccEEEEEE-------cCCCCEEEEEeCCC-
Q 037555 58 ELFSLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS---HSLTVTQIRF-------SHDDNLLLSVSRDR- 125 (298)
Q Consensus 58 ~v~~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~---~~~~v~~~~~-------~~~~~~l~~~~~dg- 125 (298)
....|+|+| ++..|..+.. ..+.|++.|+.++........ .......++| +++++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~----~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~ 215 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYD----GHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDG 215 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEE----TEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCT
T ss_pred CCCEEEEccCCCCEEEEEEC----CCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCC
Confidence 366899998 4555555532 246799999987665443322 2235789999 99999676666544
Q ss_pred ----e--EEEEEeccCCCCc--cceeeeEEeeccCCceEEEEEccCC-CEEEEeeCCCeEEEEEcc-------CCcc---
Q 037555 126 ----Q--FSVFAIQRTGTGE--IDYQLIARQEAHKRIIWSCSWNPFG-HEFATGSRDKTVKIWAVE-------NKSS--- 186 (298)
Q Consensus 126 ----~--i~iwd~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~wd~~-------~~~~--- 186 (298)
. |.+++........ .....+..+ .....++++|++ .++++-..++.|..+|+. ++..
T Consensus 216 ~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~----~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp 291 (496)
T 3kya_A 216 KGDESPSVYIIKRNADGTFDDRSDIQLIAAY----KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDP 291 (496)
T ss_dssp TGGGEEEEEEEECCTTSCCSTTSCEEEEEEE----SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCC
T ss_pred CcccCceEEEEecCCCCceeecccceeeccC----CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecc
Confidence 2 5555532211100 001122221 233567889954 555555677889999997 4443
Q ss_pred --------eeeeeecCCCCCceEEEEEeeccccCCccE-EEEeecCCcEEEEEeee
Q 037555 187 --------VKQILALPPFNSSVTALSWVGLDRQKNHGF-LAVGMESGVIELWSISV 233 (298)
Q Consensus 187 --------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-l~~g~~dg~i~vwd~~~ 233 (298)
...+.... .......++|+|++ .+ +++-.....|+.++...
T Consensus 292 ~~~~~~g~~~~l~~~~-~~~~p~~ia~~p~G-----~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 292 IVKNNPNTFKQLFTIA-DPSWEFQIFIHPTG-----KYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp BGGGCTTTEEEEEECS-SSSCCEEEEECTTS-----SEEEEEETTTTEEEEEEEET
T ss_pred cccccccccceeEecC-CCCCceEEEEcCCC-----CEEEEEeCCCCEEEEEecCC
Confidence 11222232 33456899999998 64 44445667888877653
No 286
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.80 E-value=0.0012 Score=57.10 Aligned_cols=53 Identities=8% Similarity=-0.009 Sum_probs=35.7
Q ss_pred CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555 173 DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 173 dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
+|.|..||+.+++..-..... .++..-.....+ .+++.|+.|+.|+.||.+++
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~----~~~~~g~~~tag-----glvf~g~~dg~l~A~D~~tG 517 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEH----LPLWAGVLATAG-----NLVFTGTGDGYFKAFDAKSG 517 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEES----SCCCSCCEEETT-----TEEEEECTTSEEEEEETTTC
T ss_pred cceEEEEECCCCCEEEEecCC----CCCcccceEeCC-----CEEEEECCCCcEEEEECCCC
Confidence 578999999998876533221 122111122223 57888999999999999988
No 287
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.78 E-value=0.0068 Score=46.26 Aligned_cols=172 Identities=12% Similarity=0.168 Sum_probs=102.8
Q ss_pred ccccccccEEEEEEcCCCCEE-EEEeCCCeEEEEEeccCCCCccceeeeEEee-ccCCceEEEEEccCCCEEEEeeCCCe
Q 037555 98 RLQSHSLTVTQIRFSHDDNLL-LSVSRDRQFSVFAIQRTGTGEIDYQLIARQE-AHKRIIWSCSWNPFGHEFATGSRDKT 175 (298)
Q Consensus 98 ~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~ 175 (298)
.+.+-...+..++|+|++..| ++...++.|...|.. ...+..+. .-......+++.+++.++++.-.++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~--------g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~ 92 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN--------GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYA 92 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT--------CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC--------CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCc
Confidence 345555679999999976655 456677888888876 22333332 11245678888888876666556788
Q ss_pred EEEEEccCCccee--eeeecC----CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcce
Q 037555 176 VKIWAVENKSSVK--QILALP----PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANI 249 (298)
Q Consensus 176 i~~wd~~~~~~~~--~~~~~~----~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 249 (298)
+.++++.....+. ....+. ..+.....++|+|.+ ..|.++.+.....+|.+... .. . .....
T Consensus 93 l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~-----~~L~va~E~~p~~i~~~~g~-~~-~-----~~l~i 160 (255)
T 3qqz_A 93 IYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQD-----HTFWFFKEKNPIEVYKVNGL-LS-S-----NELHI 160 (255)
T ss_dssp EEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTT-----TEEEEEEESSSEEEEEEEST-TC-S-----SCCEE
T ss_pred EEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCC-----CEEEEEECcCCceEEEEccc-cc-C-----Cceee
Confidence 9999887654321 111111 234557899999987 56777777666677776521 00 0 00011
Q ss_pred eee--eccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 250 IIR--FDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 250 ~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
... +. -..+...+.+++++|... .+++.......|..+|.
T Consensus 161 ~~~~~~~-~~~~~~d~S~l~~dp~tg------~lliLS~~s~~L~~~d~ 202 (255)
T 3qqz_A 161 SKDKALQ-RQFTLDDVSGAEFNQQKN------TLLVLSHESRALQEVTL 202 (255)
T ss_dssp EECHHHH-HTCCSSCCCEEEEETTTT------EEEEEETTTTEEEEECT
T ss_pred ecchhhc-cccccCCceeEEEcCCCC------eEEEEECCCCeEEEEcC
Confidence 100 00 011233568899999762 66666667777777664
No 288
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.78 E-value=0.0093 Score=53.44 Aligned_cols=181 Identities=9% Similarity=-0.045 Sum_probs=99.6
Q ss_pred ceEEEEEEcCCceeeeccccccccEEEEEEcCCCC-EEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEE
Q 037555 82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDN-LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW 160 (298)
Q Consensus 82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 160 (298)
...|+..++...+....+. ....+..++|.+... ++++-...+.|+.+++...... ......+.........|++
T Consensus 403 ~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~---~~~~~vi~~~l~~P~GLAv 478 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV---SSYDTVISRDIQAPDGLAV 478 (791)
T ss_dssp BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CEEEECSSCSCCCEEEE
T ss_pred ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCC---cceeEEEecCCCCcceeee
Confidence 4567888887554433333 345577899998554 4455555678888887642110 0112222223345678999
Q ss_pred ccCCCEEEEe-eCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEee-cC-CcEEEEEeeecccc
Q 037555 161 NPFGHEFATG-SRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGM-ES-GVIELWSISVNRTN 237 (298)
Q Consensus 161 ~~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~-~d-g~i~vwd~~~~~~~ 237 (298)
.+.++.|+.+ ...+.|.+.++....... + +.........|++.|.. ..|+... .. +.|.+.++...
T Consensus 479 D~~~~~LY~tD~~~~~I~v~~ldG~~~~~-l--~~~~l~~P~gIaVDp~~-----g~LYwtD~g~~~~I~~~~~dG~--- 547 (791)
T 3m0c_C 479 DWIHSNIYWTDSVLGTVSVADTKGVKRKT-L--FRENGSKPRAIVVDPVH-----GFMYWTDWGTPAKIKKGGLNGV--- 547 (791)
T ss_dssp ETTTTEEEEEETTTTEEEEEETTSSSEEE-E--EECTTCCEEEEEEETTT-----TEEEEEECSSSCEEEEEETTSC---
T ss_pred eecCCcEEEEecCCCeEEEEeCCCCeEEE-E--EeCCCCCcceEEEecCC-----CCEEEecCCCCCeEEEEecCCC---
Confidence 8877555555 457889999987544322 2 11233457899999975 3444443 33 67777776543
Q ss_pred cccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 238 DVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
.....+. ..-...+.|++++.+. .++++-.....|...++
T Consensus 548 ----------~~~~lv~---~~l~~P~GLavD~~~~------~LYwaD~~~~~I~~~d~ 587 (791)
T 3m0c_C 548 ----------DIYSLVT---ENIQWPNGITLDLLSG------RLYWVDSKLHSISSIDV 587 (791)
T ss_dssp ----------CEEEEEC---SSCSCEEEEEEETTTT------EEEEEETTTTEEEEEET
T ss_pred ----------ceEEEEe---CCCCCceEEEEecCCC------eEEEEeCCCCcEEEEec
Confidence 1111111 1224567788886551 34444344455655554
No 289
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.77 E-value=0.019 Score=51.68 Aligned_cols=202 Identities=10% Similarity=0.020 Sum_probs=112.0
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc-------cccccEEEEEEcCCCCEEEEEeCCCeEEE
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ-------SHSLTVTQIRFSHDDNLLLSVSRDRQFSV 129 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 129 (298)
..|.++...+++.+.+.. . + -|.+||..+++...... .....|.++...++|.+. .|+..+-|.+
T Consensus 211 ~~i~~i~~d~~g~lwigt-----~-~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~~Gl~~ 282 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWIGT-----S-K-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLW-IATELNGIMI 282 (781)
T ss_dssp SSEEEEEECTTCCEEEEE-----T-T-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEE-EEESSSCEEE
T ss_pred CceeEEEEcCCCCEEEEe-----C-C-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEE-EEeCCCCeEE
Confidence 468889888888877655 1 3 58899987665432211 124568999988887644 4555455777
Q ss_pred EEeccCCCCccce---eeeEE----eeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeee-------cCC
Q 037555 130 FAIQRTGTGEIDY---QLIAR----QEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILA-------LPP 195 (298)
Q Consensus 130 wd~~~~~~~~~~~---~~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-------~~~ 195 (298)
++........... ..+.. .......|.++...+++++ -.|+.++-|..++........ +.. ...
T Consensus 283 ~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~l 360 (781)
T 3v9f_A 283 LDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNI-WIGTWGGGINFISNAPPTFHT-WSYSPTQMNESSL 360 (781)
T ss_dssp EETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCE-EEEEBSSCEEEECSSCCSCEE-EC----CCCSSCC
T ss_pred ECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCE-EEEecCCeEEEeCCCCCccee-eccCccccccCCC
Confidence 8876532100000 00000 0113457899988888764 456656668888876543221 100 011
Q ss_pred CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCC
Q 037555 196 FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPK 275 (298)
Q Consensus 196 ~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 275 (298)
....|.++...+++ .|..|+.++-|..|+..+.... ............|.++...+++
T Consensus 361 ~~~~v~~i~~d~~g------~lWigt~~~Gl~~~~~~~~~~~-------------~~~~~~~~~~~~v~~i~~d~~g--- 418 (781)
T 3v9f_A 361 SNKVVSSVCDDGQG------KLWIGTDGGGINVFENGKRVAI-------------YNKENRELLSNSVLCSLKDSEG--- 418 (781)
T ss_dssp SSSCEEEEEECTTS------CEEEEEBSSCEEEEETTEEEEE-------------CC-----CCCSBEEEEEECTTS---
T ss_pred CCcceEEEEEcCCC------CEEEEeCCCcEEEEECCCCeEE-------------EccCCCCCCCcceEEEEECCCC---
Confidence 23568888887766 4667776666888887653111 0000011234568888877766
Q ss_pred CCcceEEEeeeCCCcEEEeE
Q 037555 276 NSRTMQLASCGADNTVRVFQ 295 (298)
Q Consensus 276 ~~~~~~l~s~~~d~~i~iw~ 295 (298)
.+.+ ++.++-|..++
T Consensus 419 ----~lWi-gt~~~Gl~~~~ 433 (781)
T 3v9f_A 419 ----NLWF-GTYLGNISYYN 433 (781)
T ss_dssp ----CEEE-EETTEEEEEEC
T ss_pred ----CEEE-EeccCCEEEEc
Confidence 3333 44444455554
No 290
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.70 E-value=0.005 Score=53.35 Aligned_cols=74 Identities=14% Similarity=0.062 Sum_probs=46.0
Q ss_pred EEEEcCCCCEEEeEeccCC-----------CCceEEEEEEcCCceeeecccc--cc--------ccEEEEEEc-CCC---
Q 037555 61 SLCCDHQGKLVASSCKAQS-----------TAAAEIWLWEVGSWKAMGRLQS--HS--------LTVTQIRFS-HDD--- 115 (298)
Q Consensus 61 ~~~~s~~~~~l~~~~~~~~-----------~~d~~i~vw~~~~~~~~~~~~~--~~--------~~v~~~~~~-~~~--- 115 (298)
.+++.+...+++.+..+.. .....|..+|..+++.+-.++. |. .++. +... .+|
T Consensus 245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~ 323 (599)
T 1w6s_A 245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR 323 (599)
T ss_dssp CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence 3456666677776643100 0024799999999988766543 21 1222 2222 467
Q ss_pred CEEEEEeCCCeEEEEEeccC
Q 037555 116 NLLLSVSRDRQFSVFAIQRT 135 (298)
Q Consensus 116 ~~l~~~~~dg~i~iwd~~~~ 135 (298)
..++.++.+|.+.++|..++
T Consensus 324 ~~v~~~~~~G~l~~lD~~tG 343 (599)
T 1w6s_A 324 KLLTHPDRNGIVYTLDRTDG 343 (599)
T ss_dssp EEEEEECTTSEEEEEETTTC
T ss_pred EEEEEECCCcEEEEEECCCC
Confidence 46777889999999998764
No 291
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.70 E-value=0.0033 Score=54.29 Aligned_cols=29 Identities=14% Similarity=0.039 Sum_probs=22.6
Q ss_pred cCCC---EEEEeeCCCeEEEEEccCCcceeee
Q 037555 162 PFGH---EFATGSRDKTVKIWAVENKSSVKQI 190 (298)
Q Consensus 162 ~~~~---~l~~~~~dg~i~~wd~~~~~~~~~~ 190 (298)
++++ .++.++.+|.+.++|.++++.+...
T Consensus 311 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~ 342 (571)
T 2ad6_A 311 VNGKMTPLLSHIDRNGILYTLNRENGNLIVAE 342 (571)
T ss_dssp ETTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cCCcEEEEEEEeCCCcEEEEEECCCCCEEeee
Confidence 4563 5777888999999999998876543
No 292
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.59 E-value=0.031 Score=48.70 Aligned_cols=160 Identities=9% Similarity=-0.078 Sum_probs=96.6
Q ss_pred CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee-eeccccccccEEEEEEcCCCC-EEEEEeCCCeEEEEEec
Q 037555 56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA-MGRLQSHSLTVTQIRFSHDDN-LLLSVSRDRQFSVFAIQ 133 (298)
Q Consensus 56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~ 133 (298)
-..+..++|++.+..|..+- ...+.|..++++.... ...+...-.....+++.+.+. ++++-...+.|.+.+++
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD----~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d 114 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSD----VSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD 114 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEE----TTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEEEeCCCEEEEEE----CCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECC
Confidence 44578999999777776663 2467899998875432 222332234678999998555 55555567899999987
Q ss_pred cCCCCccceeeeEEee-ccCCceEEEEEccCCCEEEEeeC--CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555 134 RTGTGEIDYQLIARQE-AHKRIIWSCSWNPFGHEFATGSR--DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR 210 (298)
Q Consensus 134 ~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (298)
... ...+. ..-.....|++.|.+.+|+.... .+.|...++....... + ....-.....+++++.+.
T Consensus 115 G~~--------~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~-l--~~~~~~~P~Glald~~~~ 183 (619)
T 3s94_A 115 GSL--------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI-I--INSEIYWPNGLTLDYEEQ 183 (619)
T ss_dssp SCS--------CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE-E--ECSSCSSEEEEEEETTTT
T ss_pred CCC--------EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEE-E--EeCCCCCCcEEEEEccCC
Confidence 421 11111 22344678999997666666653 3677777776433322 1 112234578999998762
Q ss_pred cCCccEEEEeecCCcEEEEEeeec
Q 037555 211 QKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 211 ~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
.+.++-...+.|..+++...
T Consensus 184 ----~LY~aD~~~~~I~~~~~dG~ 203 (619)
T 3s94_A 184 ----KLYWADAKLNFIHKSNLDGT 203 (619)
T ss_dssp ----EEEEEETTTCCEEEESSSCC
T ss_pred ----EEEEEeCCCCeEEEecCCCC
Confidence 44444445677888887643
No 293
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.56 E-value=0.02 Score=45.59 Aligned_cols=150 Identities=8% Similarity=0.103 Sum_probs=79.8
Q ss_pred CCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecc---ccccccEEEEEEcCCCCEEEEEeCCCeEEEEEe
Q 037555 56 GNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRL---QSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAI 132 (298)
Q Consensus 56 ~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 132 (298)
...+.++.|.+ +..++++ ..+.|.. ..+.++.-..+ ..+...+..+.+.+++..++++ .+|.| |..
T Consensus 79 ~~~~~~i~~~~-~~~~~~g------~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v--~~S 147 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIVG------EPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAI--YRT 147 (327)
T ss_dssp CCEEEEEEEET-TEEEEEE------ETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCE--EEE
T ss_pred CccEEEEEecC-CeEEEEE------CCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccE--EEE
Confidence 44789999986 4555544 2454443 33333322221 1233456778877766655554 45543 322
Q ss_pred ccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccC
Q 037555 133 QRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQK 212 (298)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 212 (298)
..... .+..+. ......+..+.+.+++.+++.+...+..+-.|- .+.....+ .. .....+..+.+.+++
T Consensus 148 ~DgG~---tW~~~~--~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~tW~~~-~~-~~~~~~~~~~~~~~g--- 216 (327)
T 2xbg_A 148 KDSGK---NWQALV--QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQTAWEPH-NR-TTSRRLHNMGFTPDG--- 216 (327)
T ss_dssp SSTTS---SEEEEE--CSCCCCEEEEEECTTSCEEEEETTSSEEEEECT-TCSSCEEE-EC-CSSSCEEEEEECTTS---
T ss_pred cCCCC---CCEEee--cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCCceeEC-CC-CCCCccceeEECCCC---
Confidence 22111 033322 234557889999998887776654443343442 12222222 11 245678888888876
Q ss_pred CccEEEEeecCCcEEEEE
Q 037555 213 NHGFLAVGMESGVIELWS 230 (298)
Q Consensus 213 ~~~~l~~g~~dg~i~vwd 230 (298)
.++ .++.+|.+++.+
T Consensus 217 --~~~-~~~~~G~~~~s~ 231 (327)
T 2xbg_A 217 --RLW-MIVNGGKIAFSD 231 (327)
T ss_dssp --CEE-EEETTTEEEEEE
T ss_pred --CEE-EEeCCceEEEec
Confidence 444 445678777653
No 294
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.53 E-value=0.0084 Score=51.97 Aligned_cols=101 Identities=9% Similarity=-0.003 Sum_probs=61.3
Q ss_pred ceEEEEEEcCCceeeecccccccc-------------------------------------E-EEEEEcCCCCEEEEEeC
Q 037555 82 AAEIWLWEVGSWKAMGRLQSHSLT-------------------------------------V-TQIRFSHDDNLLLSVSR 123 (298)
Q Consensus 82 d~~i~vw~~~~~~~~~~~~~~~~~-------------------------------------v-~~~~~~~~~~~l~~~~~ 123 (298)
++.|+.+|..+++.+-.+...... + ...++.++..+++.+..
T Consensus 181 ~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g 260 (599)
T 1w6s_A 181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTG 260 (599)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECC
T ss_pred CCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCC
Confidence 789999999999877554321100 0 13455566667777665
Q ss_pred C----------------CeEEEEEeccCCCCccceeeeEEee--ccC--------CceEEEEEc-cCC---CEEEEeeCC
Q 037555 124 D----------------RQFSVFAIQRTGTGEIDYQLIARQE--AHK--------RIIWSCSWN-PFG---HEFATGSRD 173 (298)
Q Consensus 124 d----------------g~i~iwd~~~~~~~~~~~~~~~~~~--~~~--------~~v~~~~~~-~~~---~~l~~~~~d 173 (298)
+ +.|.-+|..+++ .+-.+. .|. .++. +... .++ ..++.++.+
T Consensus 261 ~~~p~~~~~r~gd~~y~~sv~Ald~~TG~-------~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~ 332 (599)
T 1w6s_A 261 NPAPWNETMRPGDNKWTMTIFGRDADTGE-------AKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRN 332 (599)
T ss_dssp CCSCSCGGGSCSCCTTSSEEEEEETTTCC-------EEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTT
T ss_pred CCccccCcccCCCccccceEEEEeCCCCc-------eeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCC
Confidence 5 367778877632 222222 221 1222 2222 356 467778899
Q ss_pred CeEEEEEccCCcceeee
Q 037555 174 KTVKIWAVENKSSVKQI 190 (298)
Q Consensus 174 g~i~~wd~~~~~~~~~~ 190 (298)
|.+.++|.++++.+...
T Consensus 333 G~l~~lD~~tG~~lw~~ 349 (599)
T 1w6s_A 333 GIVYTLDRTDGALVSAN 349 (599)
T ss_dssp SEEEEEETTTCCEEEEE
T ss_pred cEEEEEECCCCCEeecc
Confidence 99999999998877643
No 295
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.53 E-value=0.0027 Score=51.75 Aligned_cols=116 Identities=14% Similarity=0.149 Sum_probs=79.0
Q ss_pred ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee------------eecccc------ccccEEEEEEcC---CCC
Q 037555 58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA------------MGRLQS------HSLTVTQIRFSH---DDN 116 (298)
Q Consensus 58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~------------~~~~~~------~~~~v~~~~~~~---~~~ 116 (298)
.|..+..||+|++||..+ +..|.|-.+..+.. .+.+.- ...+|..+.|+| .+.
T Consensus 67 ~i~qlvlSpsG~lLAl~g------~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds 140 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN------DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDS 140 (452)
T ss_dssp TTCEEEECTTSSEEEEEC------SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGC
T ss_pred ceeEEEECCCCCEEEEec------CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCC
Confidence 678899999999999985 57899988863210 111221 246799999999 456
Q ss_pred EEEEEeCCCeEEEEEeccCCCCcccee---eeEEeeccCCceEEEEEccCCCEEEEee--CCCeEEEE
Q 037555 117 LLLSVSRDRQFSVFAIQRTGTGEIDYQ---LIARQEAHKRIIWSCSWNPFGHEFATGS--RDKTVKIW 179 (298)
Q Consensus 117 ~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~~w 179 (298)
.|++-..|+.|++||+......+...+ ...........|.+++|.+++-.|+..+ ..|.|+-.
T Consensus 141 ~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 141 CIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred eEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 899999999999999987332211000 0011112336788999999887777755 77877643
No 296
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.48 E-value=0.023 Score=44.48 Aligned_cols=151 Identities=14% Similarity=0.122 Sum_probs=75.2
Q ss_pred CCCEEEeEeccCCCCceEEEEEEcCCceee--eccccccccEEEEEEcCCCCEEEEEeCCC-----eEEEEEeccCCCCc
Q 037555 67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAM--GRLQSHSLTVTQIRFSHDDNLLLSVSRDR-----QFSVFAIQRTGTGE 139 (298)
Q Consensus 67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~ 139 (298)
++.+++.|+.+....-..+.+||..+.+-. ..+.........+.+ ++.+++.|+.++ .+.+||+.+..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~--- 135 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNE--- 135 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTE---
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCe---
Confidence 677777776533223356889998765432 222211111222222 567777777553 46677766532
Q ss_pred cceeeeEEeeccCCceEEEEEccCCCEEEEeeCC-------CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccC
Q 037555 140 IDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD-------KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQK 212 (298)
Q Consensus 140 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 212 (298)
+..+..+...... .+++. -++..++.|+.+ ..+.+||+.+.+-.. +..++..... .+++.. ++
T Consensus 136 --W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~-~~~~~~-~~--- 205 (302)
T 2xn4_A 136 --WFHVAPMNTRRSS-VGVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTY-IAEMSTRRSG-AGVGVL-NN--- 205 (302)
T ss_dssp --EEEECCCSSCCBS-CEEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEEEE-ECCCSSCCBS-CEEEEE-TT---
T ss_pred --EeecCCCCCcccC-ceEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEE-CCCCcccccc-ccEEEE-CC---
Confidence 3333222211111 12222 256666666542 358889987754322 2122211111 222222 33
Q ss_pred CccEEEEeecC-----CcEEEEEeeec
Q 037555 213 NHGFLAVGMES-----GVIELWSISVN 234 (298)
Q Consensus 213 ~~~~l~~g~~d-----g~i~vwd~~~~ 234 (298)
.+++.|+.+ ..+.+||+.+.
T Consensus 206 --~iyv~GG~~~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 206 --LLYAVGGHDGPLVRKSVEVYDPTTN 230 (302)
T ss_dssp --EEEEECCBSSSSBCCCEEEEETTTT
T ss_pred --EEEEECCCCCCcccceEEEEeCCCC
Confidence 577777654 36888887654
No 297
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=97.45 E-value=0.0089 Score=44.14 Aligned_cols=110 Identities=9% Similarity=-0.007 Sum_probs=65.7
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccccccc--------EEEEEEcCCCCEEEEEeCCCeEE
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLT--------VTQIRFSHDDNLLLSVSRDRQFS 128 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~--------v~~~~~~~~~~~l~~~~~dg~i~ 128 (298)
..+..++|+|+|.+.++. ++.++-.+..+.....-+. .... ..++.|.|+|.+.++ .||.|.
T Consensus 41 ~~~~~laf~P~G~LYaV~-------~G~Ly~~~~~t~~~~~W~~-s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iy 110 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGVL-------NDKIYKGTPPTHDNDNWMG-RAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLY 110 (236)
T ss_dssp TTCSEEEECTTSCEEEEE-------TTEEEEESCCCSTTCCHHH-HCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEE
T ss_pred ccceeEEECCCccEEEEe-------CCeEEEECCCCCCcccccc-cccEecccccccceEEEECCCCCEEEe--CCCEEE
Confidence 367799999999977773 6777766664422211111 1222 378999999988887 569887
Q ss_pred EEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEE
Q 037555 129 VFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKI 178 (298)
Q Consensus 129 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 178 (298)
-++..+.....-...-...-..--..+..|.+.|+|.+.++. |+.++-
T Consensus 111 r~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr 158 (236)
T 1tl2_A 111 KASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK 158 (236)
T ss_dssp EESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred EeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence 666433221110000011111112467999999999877776 777543
No 298
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.45 E-value=0.026 Score=44.18 Aligned_cols=151 Identities=9% Similarity=0.104 Sum_probs=77.1
Q ss_pred CCCEEEeEeccCCCCceEEEEEEcCCce-----eeeccccccccEEEEEEcCCCCEEEEEeCC-----CeEEEEEeccCC
Q 037555 67 QGKLVASSCKAQSTAAAEIWLWEVGSWK-----AMGRLQSHSLTVTQIRFSHDDNLLLSVSRD-----RQFSVFAIQRTG 136 (298)
Q Consensus 67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~ 136 (298)
++.+++.|+.+.......+.+||..+.+ .+..+.........+.+ ++++++.|+.+ ..+.+||+.+..
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 5677777765322234578999987654 22222211112222222 56677777654 357788876532
Q ss_pred CCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC-----CeEEEEEccCCcceeeeeecCCCCCceEEEEEeecccc
Q 037555 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD-----KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQ 211 (298)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (298)
+..+......... .+++. -++..++.|+.+ ..+.+||+.+.+-.. +..++.... -.+++.. ++
T Consensus 140 -----W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~-~~~~~~~-~~-- 207 (301)
T 2vpj_A 140 -----WSMLGDMQTAREG-AGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN-VTPMATKRS-GAGVALL-ND-- 207 (301)
T ss_dssp -----EEEEEECSSCCBS-CEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEEEE-ECCCSSCCB-SCEEEEE-TT--
T ss_pred -----EEECCCCCCCccc-ceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcEEe-CCCCCcccc-cceEEEE-CC--
Confidence 3333332221111 12222 256677777654 458899988754322 212221111 1222222 33
Q ss_pred CCccEEEEeecC-----CcEEEEEeeec
Q 037555 212 KNHGFLAVGMES-----GVIELWSISVN 234 (298)
Q Consensus 212 ~~~~~l~~g~~d-----g~i~vwd~~~~ 234 (298)
.+++.|+.+ ..+.+||+.+.
T Consensus 208 ---~i~v~GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 208 ---HIYVVGGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp ---EEEEECCBCSSSBCCCEEEEETTTT
T ss_pred ---EEEEEeCCCCCcccceEEEEeCCCC
Confidence 577777654 46888888654
No 299
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.34 E-value=0.042 Score=44.16 Aligned_cols=162 Identities=9% Similarity=0.038 Sum_probs=86.2
Q ss_pred cEEEEEEcCCCCEEEEE------------eCCCeEEEEEeccCCCCccceeeeEEe----eccCCceEEEEEcc--CCC-
Q 037555 105 TVTQIRFSHDDNLLLSV------------SRDRQFSVFAIQRTGTGEIDYQLIARQ----EAHKRIIWSCSWNP--FGH- 165 (298)
Q Consensus 105 ~v~~~~~~~~~~~l~~~------------~~dg~i~iwd~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~~--~~~- 165 (298)
...++...|+|..++++ ..+|.|.++|+...... ...+... ....-....+.+.+ ++.
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~---~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~ 127 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPA---VSELEIIGNTLDISSFNPHGISTFIDDDNTV 127 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCC---EEECEEECSSCCGGGCCEEEEEEEECTTCCE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCc---eEEEEccCCCCCcCceeeeeeEEEECCCCcE
Confidence 34566677777555554 26899999998743221 1112111 11223566777765 343
Q ss_pred EEEEee-C--CCeEEEEEccCCcc-eeeeeecCCC-CCceEEEEEeeccccCCccEEEEeec---C------------Cc
Q 037555 166 EFATGS-R--DKTVKIWAVENKSS-VKQILALPPF-NSSVTALSWVGLDRQKNHGFLAVGME---S------------GV 225 (298)
Q Consensus 166 ~l~~~~-~--dg~i~~wd~~~~~~-~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~l~~g~~---d------------g~ 225 (298)
+|+++. . +.+|.+|++..... ...+..+.+. -...+.+.+.+++ .+.++... | ..
T Consensus 128 ~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G-----~fyvt~~~~ftd~~~~~~e~~~~~~~ 202 (355)
T 3sre_A 128 YLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE-----HFYATNDHYFIDPYLKSWEMHLGLAW 202 (355)
T ss_dssp EEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT-----EEEEEESCSCSSHHHHHHHHHTTCCC
T ss_pred EEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCC-----CEEecCCcEeCCcccccchhhccCCc
Confidence 444443 2 46788888765422 2222233322 2457889999988 56665431 1 11
Q ss_pred EEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 226 IELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 226 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
=.+|.+..+ ...... ..-...+.++|+||++ .++++-+..+.|..|+++
T Consensus 203 g~vyr~d~~-------------~~~~~~----~~l~~pNGia~spDg~------~lYvadt~~~~I~~~~~~ 251 (355)
T 3sre_A 203 SFVTYYSPN-------------DVRVVA----EGFDFANGINISPDGK------YVYIAELLAHKIHVYEKH 251 (355)
T ss_dssp EEEEEECTT-------------CCEEEE----EEESSEEEEEECTTSS------EEEEEEGGGTEEEEEEEC
T ss_pred cEEEEEECC-------------eEEEee----cCCcccCcceECCCCC------EEEEEeCCCCeEEEEEEC
Confidence 233333221 111111 1223468899999983 445555567888888864
No 300
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.26 E-value=0.044 Score=42.94 Aligned_cols=150 Identities=9% Similarity=0.092 Sum_probs=75.2
Q ss_pred CCCEEEeEeccCCCCceEEEEEEcCCceee--eccccccccEEEEEEcCCCCEEEEEeCC------CeEEEEEeccCCCC
Q 037555 67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAM--GRLQSHSLTVTQIRFSHDDNLLLSVSRD------RQFSVFAIQRTGTG 138 (298)
Q Consensus 67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~ 138 (298)
++.+++.|+.+ ...-..+.+||..+.+-. ..+.........+.+ ++++++.|+.+ ..+.+||+.+..
T Consensus 55 ~~~lyv~GG~~-~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~-- 129 (306)
T 3ii7_A 55 DNVVYILGGSQ-LFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTES-- 129 (306)
T ss_dssp TTEEEEECCBS-SSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTE--
T ss_pred CCEEEEEeCCC-CCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCc--
Confidence 56677777653 223467889998876432 222211111222222 66677777765 457888877532
Q ss_pred ccceeeeEEeeccCCceEEEEEccCCCEEEEeeC---------CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecc
Q 037555 139 EIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR---------DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLD 209 (298)
Q Consensus 139 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 209 (298)
+..+..+...... .+++. -++..++.|+. -..+.+||+.+.+-. .+..++. ...-.+++.. .+
T Consensus 130 ---W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~-~~~~~p~-~r~~~~~~~~-~~ 201 (306)
T 3ii7_A 130 ---WHTKPSMLTQRCS-HGMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWT-ELCPMIE-ARKNHGLVFV-KD 201 (306)
T ss_dssp ---EEEECCCSSCCBS-CEEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEE-EECCCSS-CCBSCEEEEE-TT
T ss_pred ---eEeCCCCcCCcce-eEEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEE-ECCCccc-hhhcceEEEE-CC
Confidence 3333222211111 12222 25666666653 345889998876432 2212221 1111223322 33
Q ss_pred ccCCccEEEEeecC-----CcEEEEEeeec
Q 037555 210 RQKNHGFLAVGMES-----GVIELWSISVN 234 (298)
Q Consensus 210 ~~~~~~~l~~g~~d-----g~i~vwd~~~~ 234 (298)
.+++.|+.+ ..+.+||+.+.
T Consensus 202 -----~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 202 -----KIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp -----EEEEECCEETTEEBCCEEEEETTTT
T ss_pred -----EEEEEeCCCCCCCCceEEEeeCCCC
Confidence 566666643 35778887654
No 301
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.25 E-value=0.086 Score=46.03 Aligned_cols=159 Identities=9% Similarity=-0.043 Sum_probs=99.0
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCC-EEEEEeCCCeEEEEEeccC
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDN-LLLSVSRDRQFSVFAIQRT 135 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 135 (298)
..+..++|++.+..|..+. ..++.|..++++.......+.........+++.+.+. ++++-...+.|.+.++...
T Consensus 37 ~~~~~l~~d~~~~~lywtD----~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~ 112 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTD----ISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ 112 (628)
T ss_dssp SCEEEEEEETTTTEEEEEE----TTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTST
T ss_pred CceEEEEEECCCCEEEEEE----CCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCC
Confidence 4578999999777666654 3478899999875433322332223466888887554 4455555788988887642
Q ss_pred CCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC--CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCC
Q 037555 136 GTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR--DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKN 213 (298)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (298)
. ...+ ....-.....+++.|....|+.... .+.|...++....... + .. .-.....+++++.+.
T Consensus 113 ~-----~~~l--~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~-l--~~-~~~~P~GlalD~~~~--- 178 (628)
T 4a0p_A 113 H-----RQVL--VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTT-L--VP-NVGRANGLTIDYAKR--- 178 (628)
T ss_dssp T-----CEEE--ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE-E--EC-SCSSEEEEEEETTTT---
T ss_pred c-----EEEE--EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEE-E--EC-CCCCcceEEEccccC---
Confidence 1 1111 1122344689999996666666653 5678888876544322 1 12 335578999999762
Q ss_pred ccEEEEeecCCcEEEEEeeec
Q 037555 214 HGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 214 ~~~l~~g~~dg~i~vwd~~~~ 234 (298)
.+.++-...+.|..+++...
T Consensus 179 -~LY~aD~~~~~I~~~d~dG~ 198 (628)
T 4a0p_A 179 -RLYWTDLDTNLIESSNMLGL 198 (628)
T ss_dssp -EEEEEETTTTEEEEEETTSC
T ss_pred -EEEEEECCCCEEEEEcCCCC
Confidence 34444455678888888643
No 302
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.22 E-value=0.057 Score=43.36 Aligned_cols=163 Identities=12% Similarity=0.027 Sum_probs=91.7
Q ss_pred ceEEEEEcCCCCEEEeEeccC-------CCCceEEEEEEcCC--ceeee-cccc-----ccccEEEEEEcC--CCC-EEE
Q 037555 58 ELFSLCCDHQGKLVASSCKAQ-------STAAAEIWLWEVGS--WKAMG-RLQS-----HSLTVTQIRFSH--DDN-LLL 119 (298)
Q Consensus 58 ~v~~~~~s~~~~~l~~~~~~~-------~~~d~~i~vw~~~~--~~~~~-~~~~-----~~~~v~~~~~~~--~~~-~l~ 119 (298)
..-.+...|+|..+++++.-. ...+|.|.++|.++ .+... .+.+ .......+.+.+ ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 445666788776655542100 01488999999873 22211 1222 234567777755 454 344
Q ss_pred EE-eC--CCeEEEEEeccCCCCccceeeeEEeecc-CCceEEEEEccCCCEEEEeeC-----------------CCeEEE
Q 037555 120 SV-SR--DRQFSVFAIQRTGTGEIDYQLIARQEAH-KRIIWSCSWNPFGHEFATGSR-----------------DKTVKI 178 (298)
Q Consensus 120 ~~-~~--dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~-----------------dg~i~~ 178 (298)
++ .. +..|.+|++...... ...+..+... -...+.+.+.++|+++++... .|.|.-
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~---~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKS---LLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTE---EEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEECCCCCCeEEEEEEECCCCE---EEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 44 33 568889988764321 2333343322 235789999999987776541 244555
Q ss_pred EEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555 179 WAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 179 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 233 (298)
+|. ++. . .+...-...+.++|+|++. .+.++-+..+.|..|++..
T Consensus 208 ~d~--~~~-~---~~~~~l~~pNGia~spDg~----~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 208 YSP--NDV-R---VVAEGFDFANGINISPDGK----YVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp ECT--TCC-E---EEEEEESSEEEEEECTTSS----EEEEEEGGGTEEEEEEECT
T ss_pred EEC--CeE-E---EeecCCcccCcceECCCCC----EEEEEeCCCCeEEEEEECC
Confidence 544 222 2 1111224568999999983 3444445678999999863
No 303
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.19 E-value=0.00058 Score=60.46 Aligned_cols=182 Identities=8% Similarity=-0.084 Sum_probs=96.4
Q ss_pred ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEE-eCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEE
Q 037555 82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSV-SRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSW 160 (298)
Q Consensus 82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 160 (298)
...|++.++.+.+....+.. ...+..++|++.+..|+.+ ...+.|+.+++....... .....+.........|++
T Consensus 385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~---~~~~~i~~~~~~P~glav 460 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS---SYDTVISRDIQAPDGLAV 460 (699)
T ss_dssp TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-C---CCCCBCCSCC--CCCEEC
T ss_pred ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCc---ceEEEEeCCCCCcceEEE
Confidence 45788888876655444443 2346688999866666555 446788888876411000 001111111123456788
Q ss_pred ccCCCEE-EEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecC-CcEEEEEeeeccccc
Q 037555 161 NPFGHEF-ATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMES-GVIELWSISVNRTND 238 (298)
Q Consensus 161 ~~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~d-g~i~vwd~~~~~~~~ 238 (298)
.+.+..| ++-...+.|.++++....... .+.........+++.|.+. .++++-... +.|.++++.....
T Consensus 461 D~~~g~LY~tD~~~~~I~v~d~dg~~~~~---l~~~~~~~P~giavDp~~g----~ly~td~~~~~~I~~~~~dG~~~-- 531 (699)
T 1n7d_A 461 DWIHSNIYWTDSVLGTVSVADTKGVKRKT---LFREQGSKPRAIVVDPVHG----FMYWTDWGTPAKIKKGGLNGVDI-- 531 (699)
T ss_dssp CCSSSBCEECCTTTSCEEEEBSSSCCEEE---ECCCSSCCCCCEECCSSSS----CCEECCCSSSCCEEBCCSSSCCC--
T ss_pred EeeCCcEEEEeccCCeEEEEecCCCceEE---EEeCCCCCcceEEEccCCC----cEEEcccCCCCeEEEEeCCCCCe--
Confidence 7644444 444456889999987543322 2222234467888988652 333333222 6777776643211
Q ss_pred ccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 239 VSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
..+. ...-...+.|+|+|++. .++++-+..+.|..+++
T Consensus 532 ------------~~l~--~~~l~~PnGlavd~~~~------~LY~aD~~~~~I~~~d~ 569 (699)
T 1n7d_A 532 ------------YSLV--TENIQWPNGITLDLLSG------RLYWVDSKLHSISSIDV 569 (699)
T ss_dssp ------------CEES--CSSCSSCCCEEECTTTC------CEEEEETTTTEEEEECS
T ss_pred ------------eEEE--eCCCCCccEEEEeccCC------EEEEEecCCCeEEEEcc
Confidence 1110 01123456788887652 45555555667776665
No 304
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.01 E-value=0.091 Score=41.90 Aligned_cols=167 Identities=10% Similarity=0.138 Sum_probs=103.5
Q ss_pred CceEEEEEcCC----CCE--EEeEeccCCCC--ceEEEEEEcC--Cceeeecccc------cc-ccEEEEEE--cCC-CC
Q 037555 57 NELFSLCCDHQ----GKL--VASSCKAQSTA--AAEIWLWEVG--SWKAMGRLQS------HS-LTVTQIRF--SHD-DN 116 (298)
Q Consensus 57 ~~v~~~~~s~~----~~~--l~~~~~~~~~~--d~~i~vw~~~--~~~~~~~~~~------~~-~~v~~~~~--~~~-~~ 116 (298)
+.++.+..-|. |+. ++.++. .. +++|.+|++. +++ +..+.. .. ..+..+++ +|. +.
T Consensus 68 g~~nnVD~r~~~~l~g~~~dla~as~---R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~ 143 (355)
T 3amr_A 68 GKLNNVDIRYDFPLNGKKVDIAAASN---RSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGK 143 (355)
T ss_dssp SCEEEEEEEEEEEETTEEEEEEEEEE---CSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCC
T ss_pred CCcccEEEecccccCCceEeEEEEeC---CCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCc
Confidence 45666666552 222 344432 34 6789999773 332 333311 11 45666777 674 44
Q ss_pred -EEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCc--ceeeeeec
Q 037555 117 -LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKS--SVKQILAL 193 (298)
Q Consensus 117 -~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~--~~~~~~~~ 193 (298)
++++...+|.+..|++.....+....+.++.+.. .+.+..+...+....|+.+-.+.-|..++.+... ....+..+
T Consensus 144 ~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~ 222 (355)
T 3amr_A 144 YYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRA 222 (355)
T ss_dssp EEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEB
T ss_pred EEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEe
Confidence 6888888999999999754443333566777664 4678899999988999999998777666754211 11112122
Q ss_pred --CCCCCceEEEEEee--ccccCCccEEEEee-cCCcEEEEEee
Q 037555 194 --PPFNSSVTALSWVG--LDRQKNHGFLAVGM-ESGVIELWSIS 232 (298)
Q Consensus 194 --~~~~~~v~~~~~~~--~~~~~~~~~l~~g~-~dg~i~vwd~~ 232 (298)
......+..|++.+ ++. .+|++++ .+..+.+||..
T Consensus 223 ~~g~l~aDvEGLai~~~~~g~----gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 223 DGRHLTRDIEGLTIYYAADGK----GYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp SSSSBCSCEEEEEEEECGGGC----EEEEEEEGGGTEEEEEESS
T ss_pred cCCccccCcceEEEEecCCCC----EEEEEEcCCCCEEEEEECC
Confidence 22335688888854 331 3566666 56799999986
No 305
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.99 E-value=0.08 Score=41.56 Aligned_cols=151 Identities=12% Similarity=0.092 Sum_probs=74.2
Q ss_pred CCCEEEeEec----cCCCCceEEEEEEcCCceeee--ccccccccEEEEEEcCCCCEEEEEeCC-----CeEEEEEeccC
Q 037555 67 QGKLVASSCK----AQSTAAAEIWLWEVGSWKAMG--RLQSHSLTVTQIRFSHDDNLLLSVSRD-----RQFSVFAIQRT 135 (298)
Q Consensus 67 ~~~~l~~~~~----~~~~~d~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 135 (298)
++.+++.|+. +.......+.+||+.+.+-.. .+.........+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 5667777754 111112468889987654322 22211112222223 56677776643 35778887653
Q ss_pred CCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC-----CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555 136 GTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD-----KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR 210 (298)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (298)
. +..+..+......-..+.+ ++..++.|+.+ ..+.+||+.+.+-.. +..++.... -.+++.. ++
T Consensus 148 ~-----W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~-~~~~~~~-~~- 216 (308)
T 1zgk_A 148 E-----WHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM-ITAMNTIRS-GAGVCVL-HN- 216 (308)
T ss_dssp E-----EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE-CCCCSSCCB-SCEEEEE-TT-
T ss_pred e-----EeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee-CCCCCCccc-cceEEEE-CC-
Confidence 2 2322222211111122222 56677777654 458899987654321 112221111 1222222 33
Q ss_pred cCCccEEEEeecC-----CcEEEEEeeec
Q 037555 211 QKNHGFLAVGMES-----GVIELWSISVN 234 (298)
Q Consensus 211 ~~~~~~l~~g~~d-----g~i~vwd~~~~ 234 (298)
.+++.|+.+ ..+.+||+.+.
T Consensus 217 ----~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 217 ----CIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp ----EEEEECCBCSSSBCCCEEEEETTTT
T ss_pred ----EEEEEeCCCCCCccceEEEEeCCCC
Confidence 577777654 46888887654
No 306
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.86 E-value=0.13 Score=41.33 Aligned_cols=114 Identities=10% Similarity=0.086 Sum_probs=64.0
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee--eecc---ccccccEEEEEEcCC---CCEEEE
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA--MGRL---QSHSLTVTQIRFSHD---DNLLLS 120 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~--~~~~---~~~~~~v~~~~~~~~---~~~l~~ 120 (298)
+..+...-.....++|.|+|+++++- ..+.|++++ .++. +..+ .........++|+|+ +..|..
T Consensus 23 ~~~va~~l~~P~~ia~~pdG~l~V~e------~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv 94 (352)
T 2ism_A 23 VEEVVGGLEVPWALAFLPDGGMLIAE------RPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYA 94 (352)
T ss_dssp EEEEECCCSCEEEEEECTTSCEEEEE------TTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEE
T ss_pred EEEEECCCCCceEEEEcCCCeEEEEe------CCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEE
Confidence 33443334567899999999966654 258899998 3332 2211 122456789999998 444444
Q ss_pred EeC-C-----CeEEEEEeccCCCCccceeeeEEee---ccCCceEEEEEccCCCEEEEee
Q 037555 121 VSR-D-----RQFSVFAIQRTGTGEIDYQLIARQE---AHKRIIWSCSWNPFGHEFATGS 171 (298)
Q Consensus 121 ~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~ 171 (298)
+.. . +.|..++...... ......+..+. ........++|.|++.++++.+
T Consensus 95 ~~~~~~~~~~~~v~r~~~~~~~~-~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 95 YRTVAEGGLRNQVVRLRHLGERG-VLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEECTTSSEEEEEEEEECSSCE-EEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEecCCCCCccEEEEEEeCCCCc-CceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 433 2 5677777653210 00011122222 1112236899999997666643
No 307
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.83 E-value=0.019 Score=49.69 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=34.6
Q ss_pred CCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeec
Q 037555 163 FGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGME 222 (298)
Q Consensus 163 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~ 222 (298)
.+.+++.++.||.++.||.++++.+..+..-.+ ....-+.+..++. .++++.+.
T Consensus 496 agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g--~~a~P~~y~~~G~----qYv~~~~G 549 (582)
T 1flg_A 496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSG--IVSPPITWEQDGE----QYLGVTVG 549 (582)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEEEEECSSC--CCSCCEEEEETTE----EEEEEEEC
T ss_pred CCCEEEEECCCCcEEEEECCCCCEEEEecCCCC--cccCceEEEECCE----EEEEEEcc
Confidence 466788899999999999999998875432111 1112255556663 45555443
No 308
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.82 E-value=0.12 Score=40.39 Aligned_cols=106 Identities=6% Similarity=0.109 Sum_probs=56.4
Q ss_pred CCEEEeEeccCCCCceEEEEEEcCCceee--eccccccccEEEEEEcCCCCEEEEEeCC----CeEEEEEeccCCCCccc
Q 037555 68 GKLVASSCKAQSTAAAEIWLWEVGSWKAM--GRLQSHSLTVTQIRFSHDDNLLLSVSRD----RQFSVFAIQRTGTGEID 141 (298)
Q Consensus 68 ~~~l~~~~~~~~~~d~~i~vw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~ 141 (298)
+.+++.|+. .....+.+||..+.+-. ..+.........+.+ ++.+++.|+.+ ..+.+||+.+..
T Consensus 12 ~~l~~~GG~---~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~----- 81 (306)
T 3ii7_A 12 DYRIALFGG---SQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDS----- 81 (306)
T ss_dssp CEEEEEECC---SSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTE-----
T ss_pred ceEEEEeCC---CCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCe-----
Confidence 345666654 22567889998876532 222211112222222 56677777754 567888877542
Q ss_pred eeeeEEeeccCCceEEEEEccCCCEEEEeeCC------CeEEEEEccCCc
Q 037555 142 YQLIARQEAHKRIIWSCSWNPFGHEFATGSRD------KTVKIWAVENKS 185 (298)
Q Consensus 142 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~~wd~~~~~ 185 (298)
+..+..+......-..+.+ ++..++.|+.+ ..+.+||..+.+
T Consensus 82 W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 129 (306)
T 3ii7_A 82 WYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTES 129 (306)
T ss_dssp EEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred EEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence 3333322221111122222 56677777654 458899988765
No 309
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.80 E-value=0.35 Score=45.48 Aligned_cols=176 Identities=11% Similarity=0.136 Sum_probs=104.4
Q ss_pred eEEEEEEcCCceeeeccc-cccccEEEEE---EcCC-CCEEEEEe----------CCCeEEEEEeccCCCCccceeeeEE
Q 037555 83 AEIWLWEVGSWKAMGRLQ-SHSLTVTQIR---FSHD-DNLLLSVS----------RDRQFSVFAIQRTGTGEIDYQLIAR 147 (298)
Q Consensus 83 ~~i~vw~~~~~~~~~~~~-~~~~~v~~~~---~~~~-~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~ 147 (298)
+.|++.|..+.+.+..+. .....+.+++ |..+ ..++++|+ ..|.|.+|++...+ .+.+..
T Consensus 807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~k-----L~lv~~ 881 (1158)
T 3ei3_A 807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGK-----LQTVAE 881 (1158)
T ss_dssp EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTE-----EEEEEE
T ss_pred EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCE-----EEEEEE
Confidence 457788877777665543 1234445554 3322 35788776 35889999997321 333333
Q ss_pred eeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEE
Q 037555 148 QEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIE 227 (298)
Q Consensus 148 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~ 227 (298)
...++++++++-- +| +|++|- ..+|++|++...+.+...... .. .+..+.....+ ++++.|..-..|.
T Consensus 882 -~~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~~~--~~-~i~~~~l~~~~-----~~I~vgD~~~Sv~ 949 (1158)
T 3ei3_A 882 -KEVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTECNH--YN-NIMALYLKTKG-----DFILVGDLMRSVL 949 (1158)
T ss_dssp -EEESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEEEE--CC-CSCEEEEEEET-----TEEEEEESSBCEE
T ss_pred -EEcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEeec--cc-cEEEEEEeccC-----CEEEEEEhhheEE
Confidence 2357888888644 35 455444 478999999866544311111 11 13333333344 6899998877888
Q ss_pred EEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEe
Q 037555 228 LWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQV 296 (298)
Q Consensus 228 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~ 296 (298)
++.++... ..+..+. -.-+...++++.+-.++ .++.+..+|.|.+...
T Consensus 950 ~~~y~~~~------------~~L~~~a-~D~~~~~vta~~~ld~~--------t~l~aD~~gNl~vl~~ 997 (1158)
T 3ei3_A 950 LLAYKPME------------GNFEEIA-RDFNPNWMSAVEILDDD--------NFLGAENAFNLFVCQK 997 (1158)
T ss_dssp EEEEETTT------------TEEEEEE-ECCSCBCEEEEEEEETT--------EEEEEETTSEEEEEEE
T ss_pred EEEEEcCC------------CeEEEEE-eecccccEEEEEEEccC--------cEEEEcCCCcEEEEec
Confidence 88766431 2223222 12245678888887665 6677888898888765
No 310
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.80 E-value=0.13 Score=40.37 Aligned_cols=150 Identities=12% Similarity=0.042 Sum_probs=73.0
Q ss_pred CCCEEEeEeccCCCCceEEEEEEcCCceeee--ccccccccEEEEEEcCCCCEEEEEeC----C-----CeEEEEEeccC
Q 037555 67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMG--RLQSHSLTVTQIRFSHDDNLLLSVSR----D-----RQFSVFAIQRT 135 (298)
Q Consensus 67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~----d-----g~i~iwd~~~~ 135 (298)
++.+++.|+.. ...-..+.+||..+.+-.. .+.........+.+ ++.+++.|+. + ..+.+||+.+.
T Consensus 24 ~~~i~v~GG~~-~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~ 100 (308)
T 1zgk_A 24 GRLIYTAGGYF-RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN 100 (308)
T ss_dssp CCCEEEECCBS-SSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcC-CCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence 56677777641 1223568899987665332 22211111122222 5667777665 2 35778887653
Q ss_pred CCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC-----CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555 136 GTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD-----KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR 210 (298)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (298)
. +..+..+......-..+.+ ++..++.|+.+ ..+.+||+.+.+-.. +..++..... .+++.. ++
T Consensus 101 ~-----W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~-~~~~~~-~~- 169 (308)
T 1zgk_A 101 Q-----WSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHL-VAPMLTRRIG-VGVAVL-NR- 169 (308)
T ss_dssp E-----EEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEE-CCCCSSCCBS-CEEEEE-TT-
T ss_pred e-----EeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeE-CCCCCccccc-eEEEEE-CC-
Confidence 2 2222222211111122222 56666776643 358889987654322 1122211111 222222 33
Q ss_pred cCCccEEEEeecC-----CcEEEEEeeec
Q 037555 211 QKNHGFLAVGMES-----GVIELWSISVN 234 (298)
Q Consensus 211 ~~~~~~l~~g~~d-----g~i~vwd~~~~ 234 (298)
.+++.|+.+ ..+.+||+.+.
T Consensus 170 ----~iyv~GG~~~~~~~~~~~~yd~~~~ 194 (308)
T 1zgk_A 170 ----LLYAVGGFDGTNRLNSAECYYPERN 194 (308)
T ss_dssp ----EEEEECCBCSSCBCCCEEEEETTTT
T ss_pred ----EEEEEeCCCCCCcCceEEEEeCCCC
Confidence 566676654 45788887654
No 311
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.73 E-value=0.088 Score=41.06 Aligned_cols=151 Identities=9% Similarity=0.049 Sum_probs=76.2
Q ss_pred CCCEEEeEeccCCCCceEEEEEEcCCceee--eccccccccEEEEEEcCCCCEEEEEeCC-----CeEEEEEeccCCCCc
Q 037555 67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAM--GRLQSHSLTVTQIRFSHDDNLLLSVSRD-----RQFSVFAIQRTGTGE 139 (298)
Q Consensus 67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~ 139 (298)
++++++.|+.+.......+.+||+.+.+-. ..+.........+.+ ++++++.|+.+ ..+.+||+.+..
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~--- 186 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGH--- 186 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTE---
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCc---
Confidence 567777776543222457899998765432 222211111122222 66777777654 457788876532
Q ss_pred cceeeeEEeeccCCceEEEEEccCCCEEEEeeCC-----CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCc
Q 037555 140 IDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD-----KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNH 214 (298)
Q Consensus 140 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 214 (298)
+..+..+.........+.+ ++..++.|+.+ ..+.+||+.+.+-. .+..++..... .+++.. ++
T Consensus 187 --W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~-~~~~~p~~r~~-~~~~~~-~~----- 254 (301)
T 2vpj_A 187 --WTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWT-TVTSMTTPRCY-VGATVL-RG----- 254 (301)
T ss_dssp --EEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEE-EECCCSSCCBS-CEEEEE-TT-----
T ss_pred --EEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEE-ECCCCCCcccc-eeEEEE-CC-----
Confidence 3333222211111122222 56677777653 46899999876532 22222211111 222222 33
Q ss_pred cEEEEeecC-----CcEEEEEeeec
Q 037555 215 GFLAVGMES-----GVIELWSISVN 234 (298)
Q Consensus 215 ~~l~~g~~d-----g~i~vwd~~~~ 234 (298)
.+++.|+.+ ..|.+||..+.
T Consensus 255 ~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 255 RLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp EEEEECCBCSSSBEEEEEEEETTTT
T ss_pred EEEEEcCcCCCcccccEEEEcCCCC
Confidence 567777654 35667776543
No 312
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.71 E-value=0.22 Score=41.89 Aligned_cols=124 Identities=6% Similarity=0.063 Sum_probs=70.8
Q ss_pred ceEEEEE-------cCCCCEEEeEeccCCC--CceEEEEEEcCC-ceee-----eccccccccEEEEEEcC-CCCEEEEE
Q 037555 58 ELFSLCC-------DHQGKLVASSCKAQST--AAAEIWLWEVGS-WKAM-----GRLQSHSLTVTQIRFSH-DDNLLLSV 121 (298)
Q Consensus 58 ~v~~~~~-------s~~~~~l~~~~~~~~~--~d~~i~vw~~~~-~~~~-----~~~~~~~~~v~~~~~~~-~~~~l~~~ 121 (298)
....++| ++++..|+++...... ....|.+.+... +... ..+... .....++++| ++.++++-
T Consensus 187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd 265 (496)
T 3kya_A 187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNS 265 (496)
T ss_dssp BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEE
T ss_pred CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEE
Confidence 5889999 9999966666431100 123466665433 2221 122211 2345778899 45566666
Q ss_pred eCCCeEEEEEec-------cCCCCcc---c----eeeeEEeeccCCceEEEEEccCCCEEEEee-CCCeEEEEEccC
Q 037555 122 SRDRQFSVFAIQ-------RTGTGEI---D----YQLIARQEAHKRIIWSCSWNPFGHEFATGS-RDKTVKIWAVEN 183 (298)
Q Consensus 122 ~~dg~i~iwd~~-------~~~~~~~---~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~~wd~~~ 183 (298)
..++.|..+|+. ....... . ...+... ........++|+|++++|+.+. ....|+.++...
T Consensus 266 ~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 266 YEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp TTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CCCCEEEEEecccccccccCceeecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 678889999987 3321000 0 0111111 1233457899999999665554 567888866543
No 313
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.66 E-value=0.073 Score=41.58 Aligned_cols=151 Identities=15% Similarity=0.149 Sum_probs=75.6
Q ss_pred CCCEEEeEeccCCCCceEEEEEEcCCceee--eccccccccEEEEEEcCCCCEEEEEeCC-------CeEEEEEeccCCC
Q 037555 67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAM--GRLQSHSLTVTQIRFSHDDNLLLSVSRD-------RQFSVFAIQRTGT 137 (298)
Q Consensus 67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~iwd~~~~~~ 137 (298)
++.+++.|+.+....-..+.+||+.+.+-. ..+.........+.+ ++++++.|+.+ ..+.+||+.+..
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~- 184 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNE- 184 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTE-
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCc-
Confidence 567777777533222356888998765432 222211111122222 56666766543 347788876532
Q ss_pred CccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC-----CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccC
Q 037555 138 GEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD-----KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQK 212 (298)
Q Consensus 138 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 212 (298)
+..+.......... ++... ++.+++.|+.+ ..+.+||+.+.+-. .+..+..... -.+++.. ++
T Consensus 185 ----W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~r~-~~~~~~~-~~--- 252 (302)
T 2xn4_A 185 ----WTYIAEMSTRRSGA-GVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWR-QVADMNMCRR-NAGVCAV-NG--- 252 (302)
T ss_dssp ----EEEECCCSSCCBSC-EEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEE-EECCCSSCCB-SCEEEEE-TT---
T ss_pred ----EEECCCCccccccc-cEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEe-eCCCCCCccc-cCeEEEE-CC---
Confidence 33332222111111 22222 56777777654 36889999875432 2222221111 1122222 33
Q ss_pred CccEEEEeecCC-----cEEEEEeeec
Q 037555 213 NHGFLAVGMESG-----VIELWSISVN 234 (298)
Q Consensus 213 ~~~~l~~g~~dg-----~i~vwd~~~~ 234 (298)
.+++.|+.++ .+.+||+.+.
T Consensus 253 --~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 253 --LLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp --EEEEECCBCSSSBCCCEEEEETTTT
T ss_pred --EEEEECCcCCCcccccEEEEcCCCC
Confidence 5777776543 4788887654
No 314
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.56 E-value=0.22 Score=39.89 Aligned_cols=118 Identities=14% Similarity=0.024 Sum_probs=68.1
Q ss_pred eEEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee--eec----cccccccEEEEEEcCC----CCEE
Q 037555 49 SHKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA--MGR----LQSHSLTVTQIRFSHD----DNLL 118 (298)
Q Consensus 49 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~--~~~----~~~~~~~v~~~~~~~~----~~~l 118 (298)
+..+...-.....|+|.|+|+++++- ...|.|++++...++. +.. +.........++++|+ +.+.
T Consensus 24 ~~~va~gL~~P~~ia~~pdG~llVte-----r~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lY 98 (347)
T 3das_A 24 LRTVATGLNSPWGLAPLPGGDLLVSS-----RDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVY 98 (347)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEE-----TTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEE
T ss_pred eEEeecCCCCceEEEEcCCCcEEEEE-----ecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEE
Confidence 44455555678899999999988877 3378999998665543 221 1234567899999995 4343
Q ss_pred EEEe--CCCeEEEEEeccCC----CCccceeeeEEee-ccCCceEEEEEccCCCEEEEee
Q 037555 119 LSVS--RDRQFSVFAIQRTG----TGEIDYQLIARQE-AHKRIIWSCSWNPFGHEFATGS 171 (298)
Q Consensus 119 ~~~~--~dg~i~iwd~~~~~----~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~ 171 (298)
++-+ .++.|.-|.+.... .......++..+. .....-..|.|.|++.++++.+
T Consensus 99 v~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 99 AYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp EEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred EEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 4322 34455555554311 0000011122222 1112346799999998777754
No 315
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.52 E-value=0.24 Score=39.84 Aligned_cols=109 Identities=8% Similarity=0.074 Sum_probs=58.3
Q ss_pred CCceEEEEEcCCCC-EEEeEeccCCCCceEEEEEEcCCceeeec---c----ccccccEEEEEEcCC---CCEEEEE-eC
Q 037555 56 GNELFSLCCDHQGK-LVASSCKAQSTAAAEIWLWEVGSWKAMGR---L----QSHSLTVTQIRFSHD---DNLLLSV-SR 123 (298)
Q Consensus 56 ~~~v~~~~~s~~~~-~l~~~~~~~~~~d~~i~vw~~~~~~~~~~---~----~~~~~~v~~~~~~~~---~~~l~~~-~~ 123 (298)
-.....|+|.|+|+ ++++- ..+.|++++.. ++.... + .........++++|+ +..|..+ +.
T Consensus 17 l~~P~~i~~~pdG~~l~V~e------~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~ 89 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITL------RGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSE 89 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEE------TTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCCcEEEEEcCCCCEEEEEe------CCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeC
Confidence 34578999999999 66554 26889999854 332211 1 122346789999995 4444433 32
Q ss_pred -------CCeEEEEEeccCCCCccceeee-EEeec---cCCceEEEEEccCCCEEEEee
Q 037555 124 -------DRQFSVFAIQRTGTGEIDYQLI-ARQEA---HKRIIWSCSWNPFGHEFATGS 171 (298)
Q Consensus 124 -------dg~i~iwd~~~~~~~~~~~~~~-~~~~~---~~~~v~~~~~~~~~~~l~~~~ 171 (298)
...|..+++..........+.+ ..+.. ....-..+.|.|++.++++.+
T Consensus 90 ~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 148 (353)
T 2g8s_A 90 VGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALG 148 (353)
T ss_dssp ECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEEC
T ss_pred CCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEEC
Confidence 2345556654321110001111 11110 111235799999996555543
No 316
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.51 E-value=0.29 Score=40.86 Aligned_cols=117 Identities=8% Similarity=-0.019 Sum_probs=64.8
Q ss_pred EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee--eeccc------cccccEEEEEEcCC---CCEE
Q 037555 50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA--MGRLQ------SHSLTVTQIRFSHD---DNLL 118 (298)
Q Consensus 50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~--~~~~~------~~~~~v~~~~~~~~---~~~l 118 (298)
..+...-.....|+|.|+|+++++- ...+.|++++..+++. +..+. .....+..++|+|+ +..|
T Consensus 20 ~~~a~~l~~P~~~a~~pdG~l~V~e-----~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~l 94 (454)
T 1cru_A 20 KVILSNLNKPHALLWGPDNQIWLTE-----RATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYI 94 (454)
T ss_dssp EEEECCCSSEEEEEECTTSCEEEEE-----TTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEE
T ss_pred EEEECCCCCceEEEEcCCCcEEEEE-----cCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEE
Confidence 3343334567799999999988876 2245788887654432 22222 12456789999995 4444
Q ss_pred EEEe-C------------CCeEEEEEeccCCCCccceeeeE-Eeec-cCCceEEEEEccCCCEEEEee
Q 037555 119 LSVS-R------------DRQFSVFAIQRTGTGEIDYQLIA-RQEA-HKRIIWSCSWNPFGHEFATGS 171 (298)
Q Consensus 119 ~~~~-~------------dg~i~iwd~~~~~~~~~~~~~~~-~~~~-~~~~v~~~~~~~~~~~l~~~~ 171 (298)
..+. . ...|.-++...........+.+. .+.. .......|+|.|++.++++.+
T Consensus 95 Yv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 95 YISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp EEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred EEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 4433 2 13455555543211100011121 1211 123468899999998777654
No 317
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.47 E-value=0.39 Score=41.92 Aligned_cols=157 Identities=10% Similarity=-0.007 Sum_probs=93.5
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecccc------ccccEEEEEEcCCCC-EEEEEeCCCeEEE
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQS------HSLTVTQIRFSHDDN-LLLSVSRDRQFSV 129 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~------~~~~v~~~~~~~~~~-~l~~~~~dg~i~i 129 (298)
..+.+++|.+....|..+- ...+.|+.++.+.......+.. ....+..+++...+. +..+-+..+.|.+
T Consensus 340 ~~~~~ld~d~~~~~iy~sD----~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v 415 (628)
T 4a0p_A 340 RNVRAIDYDPLDKQLYWID----SRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINV 415 (628)
T ss_dssp SCEEEEEEETTTTEEEEEE----TTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCceEEEEecCCCeEEEEe----cCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEE
Confidence 4577899988766666653 2367888888764332222221 233578999988655 4556666788988
Q ss_pred EEeccCCCCccceeeeEEe-eccCCceEEEEEccCCCEEEEee-CCC--eEEEEEccCCcceeeeeecCCCCCceEEEEE
Q 037555 130 FAIQRTGTGEIDYQLIARQ-EAHKRIIWSCSWNPFGHEFATGS-RDK--TVKIWAVENKSSVKQILALPPFNSSVTALSW 205 (298)
Q Consensus 130 wd~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~-~dg--~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~ 205 (298)
.+++. .....+ .........|++.|...+|+... ... .|...++..... ..+ ....-.....+++
T Consensus 416 ~~~~G--------~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~-~~l--~~~~l~~P~gla~ 484 (628)
T 4a0p_A 416 TRLDG--------RSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER-EVL--FFSGLSKPIALAL 484 (628)
T ss_dssp EETTS--------CEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC-EEE--ECSSCSCEEEEEE
T ss_pred EECCC--------CeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc-EEE--EeccCCCccEEEE
Confidence 88763 222222 22345678999999544444443 222 566666654332 212 1222345689999
Q ss_pred eeccccCCccEEEEe-ecCCcEEEEEeee
Q 037555 206 VGLDRQKNHGFLAVG-MESGVIELWSISV 233 (298)
Q Consensus 206 ~~~~~~~~~~~l~~g-~~dg~i~vwd~~~ 233 (298)
.+.. ..|..+ ...+.|..+++..
T Consensus 485 D~~~-----~~LYw~D~~~~~I~~~~~dG 508 (628)
T 4a0p_A 485 DSRL-----GKLFWADSDLRRIESSDLSG 508 (628)
T ss_dssp ETTT-----TEEEEEETTTTEEEEEETTS
T ss_pred eCCC-----CEEEEEeCCCCEEEEEeCCC
Confidence 9876 345544 4457888888754
No 318
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.45 E-value=0.61 Score=43.87 Aligned_cols=227 Identities=10% Similarity=0.026 Sum_probs=118.6
Q ss_pred CCCCceEEec-cCCCceEEEEE---cCC-CCEEEeEecc-----CCCCceEEEEEEcCCceeeecc-ccccccEEEEEEc
Q 037555 44 TLWPESHKLY-GHGNELFSLCC---DHQ-GKLVASSCKA-----QSTAAAEIWLWEVGSWKAMGRL-QSHSLTVTQIRFS 112 (298)
Q Consensus 44 ~~~~~~~~~~-~h~~~v~~~~~---s~~-~~~l~~~~~~-----~~~~d~~i~vw~~~~~~~~~~~-~~~~~~v~~~~~~ 112 (298)
..|..+..+. .....+.|++. ..+ ..+|++|..- .....|.|.+|++..++..... ....++|++++--
T Consensus 815 ~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~ 894 (1158)
T 3ei3_A 815 HTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF 894 (1158)
T ss_dssp TTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE
T ss_pred CCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee
Confidence 3455444433 22234555553 322 4678777531 1124689999999744332221 1245678887644
Q ss_pred CCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCc-ceeeee
Q 037555 113 HDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKS-SVKQIL 191 (298)
Q Consensus 113 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~ 191 (298)
+|.++++. ...|++|++...+. .. ........ |..+.....++++++|..-..|.++..+... .+..+
T Consensus 895 -~g~Lla~i--g~~l~vy~l~~~~~----L~--~~~~~~~~-i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~- 963 (1158)
T 3ei3_A 895 -NGKLLASI--NSTVRLYEWTTEKE----LR--TECNHYNN-IMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEI- 963 (1158)
T ss_dssp -TTEEEEEE--TTEEEEEEECTTSC----EE--EEEEECCC-SCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEE-
T ss_pred -CCEEEEEc--CCEEEEEECCCCce----EE--EEeecccc-EEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEE-
Confidence 45444333 57899999975321 11 11111111 2222333357899999877777766554322 22222
Q ss_pred ecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEE---e
Q 037555 192 ALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMA---W 268 (298)
Q Consensus 192 ~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~ 268 (298)
.-......++++.+-.++ .++.+..+|.|.+.......... ...........++ ....|+++. +
T Consensus 964 a~D~~~~~vta~~~ld~~------t~l~aD~~gNl~vl~~~~~~~~~---~~~~~L~~~~~fh----lG~~vt~~~~~sl 1030 (1158)
T 3ei3_A 964 ARDFNPNWMSAVEILDDD------NFLGAENAFNLFVCQKDSAATTD---EERQHLQEVGLFH----LGEFVNVFCHGSL 1030 (1158)
T ss_dssp EECCSCBCEEEEEEEETT------EEEEEETTSEEEEEEECTTCCST---TGGGBEEEEEEEE----CSSCEEEEEECCS
T ss_pred EeecccccEEEEEEEccC------cEEEEcCCCcEEEEecCCCCCCc---cccceeeeEEEEe----CCCcEeeEEeeee
Confidence 223356678888887654 67888999999999876531110 0001111222222 244566665 2
Q ss_pred ecCCC--CCCCcceEEEeeeCCCcEEEe
Q 037555 269 KTHEK--PKNSRTMQLASCGADNTVRVF 294 (298)
Q Consensus 269 ~~~~~--~~~~~~~~l~s~~~d~~i~iw 294 (298)
.+.+. ........++.++.+|.|-+.
T Consensus 1031 ~~~~~~~~~~~~~~~il~~T~~GsIg~l 1058 (1158)
T 3ei3_A 1031 VMQNLGETSTPTQGSVLFGTVNGMIGLV 1058 (1158)
T ss_dssp CCC-------CEEEEEEEEETTSCEEEE
T ss_pred ecCCCccccccccceEEEEecCCEEEEE
Confidence 32210 000112567888889988764
No 319
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.38 E-value=0.45 Score=41.50 Aligned_cols=157 Identities=10% Similarity=-0.035 Sum_probs=93.4
Q ss_pred ceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccCC
Q 037555 58 ELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTG 136 (298)
Q Consensus 58 ~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~ 136 (298)
.+.+++|.+.+..|..+. ...+.|+.++++.......+...-.....+++.+ .+++.++-+..+.|.+.++....
T Consensus 350 ~~~~ld~d~~~~~ly~sD----~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~ 425 (619)
T 3s94_A 350 HAIAIDYDPVEGYIYWTD----DEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM 425 (619)
T ss_dssp SEEEEEEETTTTEEEEEE----TTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred ccEEEEEEcCCCeEEEEe----CCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe
Confidence 466888887555555543 2367888888764333222322234566888886 44555555667889988876421
Q ss_pred CCccceeeeEEe-eccCCceEEEEEccCCCEEEEeeC--CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCC
Q 037555 137 TGEIDYQLIARQ-EAHKRIIWSCSWNPFGHEFATGSR--DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKN 213 (298)
Q Consensus 137 ~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 213 (298)
...+ ...-.....+++.|....|+.... .+.|...++....... + ....-.....+++.+..
T Consensus 426 --------~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~-l--~~~~l~~P~GlalD~~~---- 490 (619)
T 3s94_A 426 --------RKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVV-L--VNTSLGWPNGLALDYDE---- 490 (619)
T ss_dssp --------CEEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE-E--ECSSCSCEEEEEEETTT----
T ss_pred --------EEEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEE-E--EeCCCCCCeeeEEcccC----
Confidence 1122 222345689999997555655543 3667777776433222 1 12233567899999866
Q ss_pred ccEEEEe-ecCCcEEEEEeeec
Q 037555 214 HGFLAVG-MESGVIELWSISVN 234 (298)
Q Consensus 214 ~~~l~~g-~~dg~i~vwd~~~~ 234 (298)
..|..+ ...+.|..+++...
T Consensus 491 -~~LY~aD~~~~~I~~~~~dG~ 511 (619)
T 3s94_A 491 -GKIYWGDAKTDKIEVMNTDGT 511 (619)
T ss_dssp -TEEEEEETTTTEEEEEESSSC
T ss_pred -CEEEEEECCCCEEEEEecCCC
Confidence 344444 45577888887543
No 320
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.35 E-value=0.3 Score=39.20 Aligned_cols=67 Identities=10% Similarity=0.061 Sum_probs=37.7
Q ss_pred CCceEEEEEcCC---CCEEEeEeccCC-CCceEEEEEEcCCc-----eee-eccc---cccccEEEEEEcCCCCEEEEEe
Q 037555 56 GNELFSLCCDHQ---GKLVASSCKAQS-TAAAEIWLWEVGSW-----KAM-GRLQ---SHSLTVTQIRFSHDDNLLLSVS 122 (298)
Q Consensus 56 ~~~v~~~~~s~~---~~~l~~~~~~~~-~~d~~i~vw~~~~~-----~~~-~~~~---~~~~~v~~~~~~~~~~~l~~~~ 122 (298)
......|+|+|+ +..|.++..... .....|..++...+ +.+ ..+. ........++|.|||.+.++.+
T Consensus 74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 356889999998 555555432000 00167888887643 111 1122 1112236899999998777654
No 321
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=96.01 E-value=0.68 Score=41.00 Aligned_cols=157 Identities=11% Similarity=0.097 Sum_probs=81.2
Q ss_pred CCCCEEEeEeccCCCCceEEEEEEcCCceee--e-c-----cccccccEEEEEEcCCCCEEEEEeCCC------eEEEEE
Q 037555 66 HQGKLVASSCKAQSTAAAEIWLWEVGSWKAM--G-R-----LQSHSLTVTQIRFSHDDNLLLSVSRDR------QFSVFA 131 (298)
Q Consensus 66 ~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~--~-~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~iwd 131 (298)
.++.+++.|+.+. ..-..+.+||..+++-. . . +......-..+.+..++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~-~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSS-SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCC-CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEe
Confidence 4677888886532 23456888998765432 2 1 111111122233322677777776543 477788
Q ss_pred eccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCC--eEEEEEccCCcceeeeee---cCCCCCceEEEEEe
Q 037555 132 IQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDK--TVKIWAVENKSSVKQILA---LPPFNSSVTALSWV 206 (298)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~~wd~~~~~~~~~~~~---~~~~~~~v~~~~~~ 206 (298)
..+.. +..+..+..... -.+++...++..++.|+.++ .+.+||..+..-.. +.. .+.......++.+.
T Consensus 475 ~~t~~-----W~~~~~~p~~R~-~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~-~~~~g~~p~~r~~~~a~v~~ 547 (695)
T 2zwa_A 475 MKTRE-----WSMIKSLSHTRF-RHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKD-VTPKDEFFQNSLVSAGLEFD 547 (695)
T ss_dssp TTTTE-----EEECCCCSBCCB-SCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEE-CCCSSGGGGSCCBSCEEEEE
T ss_pred CCCCc-----EEECCCCCCCcc-cceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEE-ccCCCCCCCcccceeEEEEe
Confidence 76532 333322221111 12233323677888887644 68999998754322 111 11111222334555
Q ss_pred ec-cccCCccEEEEeec--C-----CcEEEEEeeecc
Q 037555 207 GL-DRQKNHGFLAVGME--S-----GVIELWSISVNR 235 (298)
Q Consensus 207 ~~-~~~~~~~~l~~g~~--d-----g~i~vwd~~~~~ 235 (298)
.. + .+++.|+. + ..+.+||+.+..
T Consensus 548 ~~~~-----~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 548 PVSK-----QGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp TTTT-----EEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CCCC-----EEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 43 3 57777765 2 458888887653
No 322
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.83 E-value=0.49 Score=37.08 Aligned_cols=153 Identities=7% Similarity=0.013 Sum_probs=73.7
Q ss_pred cCCCCEEEeEecc----C--CCCceEEEEEEcCCceeee--ccccccccEEEEEEcCCCCEEEEEeCC--------CeEE
Q 037555 65 DHQGKLVASSCKA----Q--STAAAEIWLWEVGSWKAMG--RLQSHSLTVTQIRFSHDDNLLLSVSRD--------RQFS 128 (298)
Q Consensus 65 s~~~~~l~~~~~~----~--~~~d~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~ 128 (298)
..++.+++.|+.. . ......+.+||..+.+-.. .+.........+.+ ++.+++.|+.+ ..+.
T Consensus 43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~ 120 (315)
T 4asc_A 43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVM 120 (315)
T ss_dssp CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEE
T ss_pred EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEE
Confidence 4577888888731 0 0112348888987765322 22211111112222 56666776632 3577
Q ss_pred EEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-C-----CeEEEEEccCCcceeeeeecCCCCCceEE
Q 037555 129 VFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-D-----KTVKIWAVENKSSVKQILALPPFNSSVTA 202 (298)
Q Consensus 129 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d-----g~i~~wd~~~~~~~~~~~~~~~~~~~v~~ 202 (298)
+||+.+.. +..+..+...... .+++. -++..++.|+. + ..+.+||..+.+-.. +..++. ...-.+
T Consensus 121 ~~d~~~~~-----W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~-~r~~~~ 191 (315)
T 4asc_A 121 CYDRLSFK-----WGESDPLPYVVYG-HTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKE-LAPMQT-ARSLFG 191 (315)
T ss_dssp EEETTTTE-----EEECCCCSSCCBS-CEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEE-CCCCSS-CCBSCE
T ss_pred EECCCCCc-----EeECCCCCCcccc-eeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEE-CCCCCC-chhceE
Confidence 88876532 3333222211111 12222 35667777765 2 458899988754322 112221 111122
Q ss_pred EEEeeccccCCccEEEEeecCC-----cEEEEEeeec
Q 037555 203 LSWVGLDRQKNHGFLAVGMESG-----VIELWSISVN 234 (298)
Q Consensus 203 ~~~~~~~~~~~~~~l~~g~~dg-----~i~vwd~~~~ 234 (298)
++.. ++ .+++.|+.++ .+.+||+.+.
T Consensus 192 ~~~~-~~-----~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 192 ATVH-DG-----RIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp EEEE-TT-----EEEEEEEECSSSEEEEEEEEETTTT
T ss_pred EEEE-CC-----EEEEEeccCCCCccceEEEEECCCC
Confidence 2222 33 5667766543 4677777654
No 323
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.57 E-value=0.66 Score=36.68 Aligned_cols=203 Identities=10% Similarity=0.100 Sum_probs=119.5
Q ss_pred EEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccce
Q 037555 63 CCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDY 142 (298)
Q Consensus 63 ~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 142 (298)
-.+|..+.+|.-. ...+.++|+++.+.++.+. ....|.--.|-.+. .|+-.+ +..|..|++... .
T Consensus 73 IMnP~~~ViALra------g~~LQiFnletK~klks~~-~~e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~------s 137 (365)
T 2xzh_A 73 IMNPASKVIALKA------GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGE------S 137 (365)
T ss_dssp EECSSSSEEEEEE------TTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSS-EEEEEE-SSEEEEEESSTT------C
T ss_pred eeCCCccEEEEec------CCeEEEechHHhhhhccee-cCCccEEEEecCCC-eEEEEc-CCcEEEEcccCC------C
Confidence 3488888777763 5789999999988888777 45677777886544 444444 568999998752 2
Q ss_pred eeeEEeecc----CCceEEEEEccCCCEEEEeeC-------CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeecccc
Q 037555 143 QLIARQEAH----KRIIWSCSWNPFGHEFATGSR-------DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQ 211 (298)
Q Consensus 143 ~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~-------dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 211 (298)
.+.+.+..| ...|..-..+++.+.++..+- .|.+.+|..+..... .+++|...-..+. .++..
T Consensus 138 ~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ----~ieGhaa~F~~~~--~~g~~ 211 (365)
T 2xzh_A 138 QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ----PIEGHAASFAQFK--MEGNA 211 (365)
T ss_dssp CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE----EECCSEEEEEEEC--CTTCS
T ss_pred CCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccc----eeeeeeeeeEEEe--cCCCC
Confidence 334444433 346777777888887765542 366888888765432 4555543332222 22211
Q ss_pred CCccEEEEeec---CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeCC
Q 037555 212 KNHGFLAVGME---SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGAD 288 (298)
Q Consensus 212 ~~~~~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d 288 (298)
....+++.+.. .++++|.++....... .+-+.+....+.+...-..-..+|..++.. ..+..-+.-
T Consensus 212 ~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~----~~f~kk~vdi~fppea~~DFPVamqvs~ky-------gviyviTK~ 280 (365)
T 2xzh_A 212 EESTLFCFAVRGQAGGKLHIIEVGTPPTGN----QPFPKKAVDVFFPPEAQNDFPVAMQISEKH-------DVVFLITKY 280 (365)
T ss_dssp SCEEEEEEEEEETTEEEEEEEECSSCCTTC----CCCCCEEEEECCCTTCTTCCEEEEEEETTT-------TEEEEEETT
T ss_pred CCceEEEEEEecCCCcEEEEEEcCCCCCCC----CCcccccceeeCCccccCCceEEEEecccC-------CEEEEEeCC
Confidence 11133443332 2588888884321000 011112222222222334445678888876 678888888
Q ss_pred CcEEEeEec
Q 037555 289 NTVRVFQVN 297 (298)
Q Consensus 289 ~~i~iw~~~ 297 (298)
|.|++||+.
T Consensus 281 G~ihlyDle 289 (365)
T 2xzh_A 281 GYIHLYDLE 289 (365)
T ss_dssp SEEEEEETT
T ss_pred cEEEEEEcc
Confidence 999999875
No 324
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.18 E-value=0.97 Score=36.27 Aligned_cols=115 Identities=8% Similarity=0.009 Sum_probs=63.8
Q ss_pred EEeccCCCceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCce-eeecc---ccccccEEEEEEcCC---CCEEEEEe
Q 037555 50 HKLYGHGNELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWK-AMGRL---QSHSLTVTQIRFSHD---DNLLLSVS 122 (298)
Q Consensus 50 ~~~~~h~~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~-~~~~~---~~~~~~v~~~~~~~~---~~~l~~~~ 122 (298)
..+...-.....++|.|+|+++++- .++.|++++. +++ .+..+ .........++++|+ +..|.++.
T Consensus 22 ~~va~~l~~P~~ia~~pdG~l~V~e------~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~ 94 (354)
T 3a9g_A 22 SEVASDLEVPWSIAPLGGGRYLVTE------RPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYA 94 (354)
T ss_dssp EEEECSCSCEEEEEEEETTEEEEEE------TTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred EEEeCCCCCCeEEEEcCCCeEEEEe------CCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEE
Confidence 3333334567899999999866654 2588998874 444 22211 122356889999997 44444433
Q ss_pred C----C----CeEEEEEeccCCCCccceee-eEEeec-cCCceEEEEEccCCCEEEEee
Q 037555 123 R----D----RQFSVFAIQRTGTGEIDYQL-IARQEA-HKRIIWSCSWNPFGHEFATGS 171 (298)
Q Consensus 123 ~----d----g~i~iwd~~~~~~~~~~~~~-~~~~~~-~~~~v~~~~~~~~~~~l~~~~ 171 (298)
. + ..|..|+...........+. +..+.. .......++|.|++.++++.+
T Consensus 95 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 95 SYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred eccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 2 3 56777776542111000111 111221 112346799999998766643
No 325
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=95.04 E-value=0.92 Score=40.17 Aligned_cols=157 Identities=11% Similarity=0.196 Sum_probs=82.0
Q ss_pred CCCEEEeEeccCCC-CceEEEEEEcCCcee--eeccccccccEEEEEEcCCCCEEEEEeCCC--eEEEEEeccCCCCccc
Q 037555 67 QGKLVASSCKAQST-AAAEIWLWEVGSWKA--MGRLQSHSLTVTQIRFSHDDNLLLSVSRDR--QFSVFAIQRTGTGEID 141 (298)
Q Consensus 67 ~~~~l~~~~~~~~~-~d~~i~vw~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~ 141 (298)
++++++.|+.+... .-..+.+||..+.+- +..+...... .+++...++++++.|+.++ .+.+||..+..
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~----- 524 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEI----- 524 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTE-----
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCc-----
Confidence 67788888764321 124688999887543 2222211111 2233323778888887654 68888887643
Q ss_pred eeeeEE---eeccCCceEEEEEccC-CCEEEEeeC--C-----CeEEEEEccCCcc-----eeeeeecCCCCCceEEEEE
Q 037555 142 YQLIAR---QEAHKRIIWSCSWNPF-GHEFATGSR--D-----KTVKIWAVENKSS-----VKQILALPPFNSSVTALSW 205 (298)
Q Consensus 142 ~~~~~~---~~~~~~~v~~~~~~~~-~~~l~~~~~--d-----g~i~~wd~~~~~~-----~~~~~~~~~~~~~v~~~~~ 205 (298)
+..+.. .......-..+.+..+ +..++.|+. + ..+.+||+.+... ...+...+.....-.+++.
T Consensus 525 W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~ 604 (695)
T 2zwa_A 525 FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKY 604 (695)
T ss_dssp EEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEE
T ss_pred eEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEE
Confidence 333322 1111222233455544 566777765 2 4588999988762 2222121111111223333
Q ss_pred eeccccCCccEEEEeec--------CCcEEEEEeeec
Q 037555 206 VGLDRQKNHGFLAVGME--------SGVIELWSISVN 234 (298)
Q Consensus 206 ~~~~~~~~~~~l~~g~~--------dg~i~vwd~~~~ 234 (298)
..++ .+++.|+. ...|.+||+.+.
T Consensus 605 ~~~~-----~iyv~GG~~~~~~~~~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 605 ITPR-----KLLIVGGTSPSGLFDRTNSIISLDPLSE 636 (695)
T ss_dssp EETT-----EEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred eCCC-----EEEEECCccCCCCCCCCCeEEEEECCCC
Confidence 3324 56777764 345888888764
No 326
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.85 E-value=1.2 Score=35.56 Aligned_cols=56 Identities=5% Similarity=0.007 Sum_probs=28.4
Q ss_pred CCCEEEeEec-cC----CCCceEEEEEEcCCceeee--ccc-cccccEEEEEEcCCCCEEEEEeCC
Q 037555 67 QGKLVASSCK-AQ----STAAAEIWLWEVGSWKAMG--RLQ-SHSLTVTQIRFSHDDNLLLSVSRD 124 (298)
Q Consensus 67 ~~~~l~~~~~-~~----~~~d~~i~vw~~~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l~~~~~d 124 (298)
++++++.|+. +. ...-..+.+||+.+.+-.. .+. .......++. .++++++.|+.+
T Consensus 65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 128 (357)
T 2uvk_A 65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVN 128 (357)
T ss_dssp TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence 5677777754 10 0112468899987764322 222 1111122222 467777888754
No 327
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.80 E-value=1.2 Score=35.48 Aligned_cols=95 Identities=9% Similarity=0.061 Sum_probs=47.0
Q ss_pred CCCEEEeEeccCCCCceEEEEEEcCC--c--eeeeccc-cccccEEEEEEcCCCCEEEEEeC-C---------CeEEEEE
Q 037555 67 QGKLVASSCKAQSTAAAEIWLWEVGS--W--KAMGRLQ-SHSLTVTQIRFSHDDNLLLSVSR-D---------RQFSVFA 131 (298)
Q Consensus 67 ~~~~l~~~~~~~~~~d~~i~vw~~~~--~--~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-d---------g~i~iwd 131 (298)
++.+++.|+.+ ...+.+||+.+ . +.+..+. ........+.+ ++++++.|+. + ..+.+||
T Consensus 19 ~~~iyv~GG~~----~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd 92 (357)
T 2uvk_A 19 NDTVYIGLGSA----GTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYN 92 (357)
T ss_dssp TTEEEEECGGG----TTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEE
T ss_pred CCEEEEEeCcC----CCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEe
Confidence 56677777652 34788999863 2 2232222 11111222223 5667777765 2 3577888
Q ss_pred eccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC
Q 037555 132 IQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD 173 (298)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 173 (298)
+.+.. +..+....+....-.+++. .++..++.|+.+
T Consensus 93 ~~~~~-----W~~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~ 128 (357)
T 2uvk_A 93 PKTNS-----WVKLMSHAPMGMAGHVTFV-HNGKAYVTGGVN 128 (357)
T ss_dssp TTTTE-----EEECSCCCSSCCSSEEEEE-ETTEEEEEECCC
T ss_pred CCCCc-----EEECCCCCCcccccceEEE-ECCEEEEEeCcC
Confidence 77533 3333222211111122222 467777777754
No 328
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.66 E-value=1.2 Score=34.85 Aligned_cols=110 Identities=9% Similarity=0.158 Sum_probs=55.6
Q ss_pred CCCEEEeEeccC--CCCceEEEEEEcCCceeee--ccccccccEEEEEEcCCCCEEEEEeC------CCeEEEEEeccCC
Q 037555 67 QGKLVASSCKAQ--STAAAEIWLWEVGSWKAMG--RLQSHSLTVTQIRFSHDDNLLLSVSR------DRQFSVFAIQRTG 136 (298)
Q Consensus 67 ~~~~l~~~~~~~--~~~d~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~ 136 (298)
++++++.|+.+. ...-..+.+||..+.+-.. .+.........+. .++++++.|+. -..+.+||+.+..
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD 186 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence 567777776531 1123568889987654322 2221111111222 36667677664 2358888887643
Q ss_pred CCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCC-----CeEEEEEccCCc
Q 037555 137 TGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRD-----KTVKIWAVENKS 185 (298)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~~wd~~~~~ 185 (298)
+..+......... .+++.. ++..++.|+.+ ..+.+||+.+.+
T Consensus 187 -----W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 187 -----WKDLAPMKTPRSM-FGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp -----EEEECCCSSCCBS-CEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred -----EEECCCCCCCccc-ceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 3333222211111 122222 56677777643 347788987754
No 329
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=94.40 E-value=1.6 Score=35.02 Aligned_cols=205 Identities=14% Similarity=0.078 Sum_probs=97.7
Q ss_pred CceEEEEEcCC---CCEEEeEeccCCCCc----eEEEEEEcCCc-------eee-ecccc-ccccEEEEEEcCCCCEEEE
Q 037555 57 NELFSLCCDHQ---GKLVASSCKAQSTAA----AEIWLWEVGSW-------KAM-GRLQS-HSLTVTQIRFSHDDNLLLS 120 (298)
Q Consensus 57 ~~v~~~~~s~~---~~~l~~~~~~~~~~d----~~i~vw~~~~~-------~~~-~~~~~-~~~~v~~~~~~~~~~~l~~ 120 (298)
.....|+++|+ +..|.++.... ..+ ..|..++.... +.+ ..+.. .......++|.|||.++++
T Consensus 73 ~g~~gia~~pdf~~~g~lyv~~~~~-~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt 151 (354)
T 3a9g_A 73 AGLLGLALHPEFPKKSWVYLYASYF-AEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYIT 151 (354)
T ss_dssp CSEEEEEECTTTTTSCEEEEEEEEE-CGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEE
T ss_pred CceeeEEeCCCCCcCCEEEEEEecc-CCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEE
Confidence 46889999997 44554442100 012 67777876543 111 11221 1112467999999987777
Q ss_pred EeCC-------------CeEEEEEeccCCCCccce---eeeEEeeccCCceEEEEEcc-CCCEEEEeeCCC---eEEEEE
Q 037555 121 VSRD-------------RQFSVFAIQRTGTGEIDY---QLIARQEAHKRIIWSCSWNP-FGHEFATGSRDK---TVKIWA 180 (298)
Q Consensus 121 ~~~d-------------g~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg---~i~~wd 180 (298)
.+.. |.|.-++... ...... .......++. ....++|+| +++++++-.... .|.+.
T Consensus 152 ~G~~~~~~~~~d~~~~~G~I~ri~~dG--~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i- 227 (354)
T 3a9g_A 152 TGDAADPRLAQDLSSLAGKILRVDEEG--RPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNII- 227 (354)
T ss_dssp CCCTTCGGGGTCTTCCSSEEEEECTTS--CCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEE-
T ss_pred ECCCCCCccccCCCCCCeEEEEEcCCC--CCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEe-
Confidence 5432 3444444321 100000 0011112333 346799999 566554433221 23332
Q ss_pred ccCCcc---------------eeeeeecCCCCCceEEEEEeeccc--cCCccEEEEeecCCcEEEEEeeecccccccCCC
Q 037555 181 VENKSS---------------VKQILALPPFNSSVTALSWVGLDR--QKNHGFLAVGMESGVIELWSISVNRTNDVSTPA 243 (298)
Q Consensus 181 ~~~~~~---------------~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 243 (298)
..+.. ...+..+.........++|..... ...+.++++....+.|...++......
T Consensus 228 -~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~------ 300 (354)
T 3a9g_A 228 -LKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEV------ 300 (354)
T ss_dssp -CTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCE------
T ss_pred -cCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcc------
Confidence 21110 011112211223467777743211 012256666666677888887643110
Q ss_pred CCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeee
Q 037555 244 PSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCG 286 (298)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~ 286 (298)
.....+ +.+-...+..+++.||+ .++++..
T Consensus 301 ----~~~~~~--~~~~~~rp~~v~~~pDG-------~lyv~~~ 330 (354)
T 3a9g_A 301 ----RKISTF--FKNVFGRLRDVVIDDDG-------GILISTS 330 (354)
T ss_dssp ----EEEEEE--CTTTSCCEEEEEECTTS-------CEEEEEC
T ss_pred ----cceeee--ccCCCCCeeEEEECCCC-------cEEEEEe
Confidence 111122 11224578999999999 6666553
No 330
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.31 E-value=2.3 Score=40.80 Aligned_cols=204 Identities=10% Similarity=0.109 Sum_probs=113.7
Q ss_pred EEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccc
Q 037555 62 LCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEID 141 (298)
Q Consensus 62 ~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 141 (298)
.-.+|..+.+|.-. ..++.|+|+++...++.+. ....|.--.|-.+. .|+-.+ +..|..|++...
T Consensus 71 AIMnP~~~iiALra------g~~lQiFnl~~k~klks~~-~~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~------ 135 (1630)
T 1xi4_A 71 AIMNPASKVIALKA------GKTLQIFNIEMKSKMKAHT-MTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGE------ 135 (1630)
T ss_pred hccCCCcceEEEec------CCeEEEeehHHhhhhcccc-cCCCceEEEecCCC-eeEEEc-CCeEEEeccCCC------
Confidence 34567777776652 5789999999887777766 34567777776444 333333 467999999642
Q ss_pred eeeeEEeecc----CCceEEEEEccCCCEEEEee-------CCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccc
Q 037555 142 YQLIARQEAH----KRIIWSCSWNPFGHEFATGS-------RDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDR 210 (298)
Q Consensus 142 ~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~-------~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 210 (298)
..+.+.+..| ...|..-..+++.++++..+ -.|.+.+|..+..... .+.+|-.....+......
T Consensus 136 s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ----~iegha~~F~~~~~~~~~- 210 (1630)
T 1xi4_A 136 SQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ----PIEGHAASFAQFKMEGNA- 210 (1630)
T ss_pred CccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccch----hhhHhHhhhheeccCCCC-
Confidence 2223333323 45677777788888776544 2477888888765432 344554443333322111
Q ss_pred cCCccEEEEeec---CCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEeeeC
Q 037555 211 QKNHGFLAVGME---SGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGA 287 (298)
Q Consensus 211 ~~~~~~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~ 287 (298)
....++..+.. .+.++|.++....... ++-+.+....+.+...-..-..+|..++.. ..+...+.
T Consensus 211 -~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~----~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~-------g~iy~itk 278 (1630)
T 1xi4_A 211 -EESTLFCFAVRGQAGGKLHIIEVGTPPTGN----QPFPKKAVDVFFPPEAQNDFPVAMQISEKH-------DVVFLITK 278 (1630)
T ss_pred -CCceEEEEEEecCCCceEEEEecCCCccCC----CCCccccccccCCcccccCcceEEEecccc-------CEEEEEec
Confidence 11123333222 3688888885431100 000001111111111223334567777766 67777788
Q ss_pred CCcEEEeEec
Q 037555 288 DNTVRVFQVN 297 (298)
Q Consensus 288 d~~i~iw~~~ 297 (298)
-|.|.++|+.
T Consensus 279 ~G~~~~~d~~ 288 (1630)
T 1xi4_A 279 YGYIHLYDLE 288 (1630)
T ss_pred CceEEEEecc
Confidence 8899999874
No 331
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.84 E-value=1.5 Score=32.57 Aligned_cols=103 Identities=12% Similarity=0.018 Sum_probs=58.7
Q ss_pred EEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeecc-------ccccccEEEEEEcCCCCEEEEEeCCCeEEEEEe
Q 037555 60 FSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRL-------QSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAI 132 (298)
Q Consensus 60 ~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 132 (298)
.++.|.|+|.+.++. ||.|+-++..+.....-+ +.-=..+..|.+.|+|.+.++. |+.+.-.
T Consensus 91 ~a~~fD~~G~LYav~-------dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~-- 159 (236)
T 1tl2_A 91 QFLFFDPNGYLYAVS-------KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKA-- 159 (236)
T ss_dssp SEEEECTTSCEEEEE-------TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEE--
T ss_pred eEEEECCCCCEEEeC-------CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEec--
Confidence 788999999988884 788988876432111110 1112467999999999877777 7775432
Q ss_pred ccCCCCcccee-eeEEee-ccCCceEEEEEccCCCEEEEeeCCCe
Q 037555 133 QRTGTGEIDYQ-LIARQE-AHKRIIWSCSWNPFGHEFATGSRDKT 175 (298)
Q Consensus 133 ~~~~~~~~~~~-~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~ 175 (298)
..+........ ....+. ..-...+.+.|.+++.++++. ++.
T Consensus 160 ~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~ 202 (236)
T 1tl2_A 160 LPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGK 202 (236)
T ss_dssp CCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTE
T ss_pred CCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCe
Confidence 22211110010 011111 222234456688888777666 664
No 332
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=93.81 E-value=2 Score=34.03 Aligned_cols=178 Identities=7% Similarity=0.048 Sum_probs=105.8
Q ss_pred ceEEeccCC----CceEEEEEcCCCCEEEeEecc--CCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCC---CEE
Q 037555 48 ESHKLYGHG----NELFSLCCDHQGKLVASSCKA--QSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDD---NLL 118 (298)
Q Consensus 48 ~~~~~~~h~----~~v~~~~~s~~~~~l~~~~~~--~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l 118 (298)
+.+.+.-|. ..|..-..+++.+.++..+-. .+.-.|.+.+|..+.. .-+.+.+|......+.+.-+. +++
T Consensus 139 P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf 217 (365)
T 2xzh_A 139 PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLF 217 (365)
T ss_dssp CEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEE
T ss_pred CceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEEEecCCCCCCceEE
Confidence 345554443 356677778888877765441 1123588999998744 445677887665544443211 133
Q ss_pred EEEeC---CCeEEEEEeccC--CCCccceeeeEEeecc---CCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeee
Q 037555 119 LSVSR---DRQFSVFAIQRT--GTGEIDYQLIARQEAH---KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQI 190 (298)
Q Consensus 119 ~~~~~---dg~i~iwd~~~~--~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 190 (298)
+-+.. .+.+++.++... .......+.+..+.+. .+--.++..++....++.-+.-|.|++||+.++.++..-
T Consensus 218 ~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~n 297 (365)
T 2xzh_A 218 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 297 (365)
T ss_dssp EEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred EEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEe
Confidence 33333 268999998654 1111111222222222 344567888888889999999999999999999988733
Q ss_pred eecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555 191 LALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 191 ~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
. -....|..-+..... .=++.-...|.|.-..++..
T Consensus 298 -r--IS~d~iF~ta~~~~~-----~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 298 -R--ISGETIFVTAPHEAT-----AGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp -E--CCSSCEEEEEEEGGG-----TEEEEEETTCEEEEEEECTT
T ss_pred -c--cCCCceEEecccCCC-----CcEEEEcCCCEEEEEEECcc
Confidence 2 234555544444433 23444457887777666543
No 333
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.72 E-value=2.6 Score=35.10 Aligned_cols=55 Identities=13% Similarity=0.145 Sum_probs=35.4
Q ss_pred CceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCC------CCCceEEEEEeec
Q 037555 153 RIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPP------FNSSVTALSWVGL 208 (298)
Q Consensus 153 ~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~------~~~~v~~~~~~~~ 208 (298)
...+.|+|.|+++++++-...+.|++++..++.. ..+..+.. .......|+|+|+
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~-~~~~~~~~~~~~~~g~~Gllgia~~Pd 87 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSV-KTVFQVPEIVNDADGQNGLLGFAFHPD 87 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE-eEEecCCccccccCCCCceeEEEECCC
Confidence 3457999999998776654445788887654432 22222221 2456779999995
No 334
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=93.64 E-value=2 Score=33.52 Aligned_cols=137 Identities=9% Similarity=0.072 Sum_probs=65.3
Q ss_pred eEEEEEEcCCceeee-ccccccccEEEEEEcCCCCEEEEEeC----C-------CeEEEEEeccCCCCccceeeeEEeec
Q 037555 83 AEIWLWEVGSWKAMG-RLQSHSLTVTQIRFSHDDNLLLSVSR----D-------RQFSVFAIQRTGTGEIDYQLIARQEA 150 (298)
Q Consensus 83 ~~i~vw~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~----d-------g~i~iwd~~~~~~~~~~~~~~~~~~~ 150 (298)
..+.+||..+.+-.. .+..............++.+++.|+. + ..+..||..+.. +..+..+..
T Consensus 13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~-----W~~~~~~p~ 87 (315)
T 4asc_A 13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSE-----WLGMPPLPS 87 (315)
T ss_dssp TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTE-----EEECCCBSS
T ss_pred CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCe-----EEECCCCCc
Confidence 468899988766432 12111112222233347777777773 1 126677766532 222222111
Q ss_pred cCCceEEEEEccCCCEEEEeeCC--------CeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeec
Q 037555 151 HKRIIWSCSWNPFGHEFATGSRD--------KTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGME 222 (298)
Q Consensus 151 ~~~~v~~~~~~~~~~~l~~~~~d--------g~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~ 222 (298)
.... .+++.. ++..++.|+.+ ..+.+||..+.+- ..+..++.... -.+++. ..+ .+++.|+.
T Consensus 88 ~r~~-~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~-~~~~~~-~~~-----~iyv~GG~ 157 (315)
T 4asc_A 88 PRCL-FGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKW-GESDPLPYVVY-GHTVLS-HMD-----LVYVIGGK 157 (315)
T ss_dssp CEES-CEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEE-EECCCCSSCCB-SCEEEE-ETT-----EEEEECCB
T ss_pred chhc-eeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcE-eECCCCCCccc-ceeEEE-ECC-----EEEEEeCC
Confidence 1111 112222 56666666632 4588899887543 21212221111 122222 233 56666665
Q ss_pred -C-----CcEEEEEeeec
Q 037555 223 -S-----GVIELWSISVN 234 (298)
Q Consensus 223 -d-----g~i~vwd~~~~ 234 (298)
+ ..+.+||..+.
T Consensus 158 ~~~~~~~~~~~~yd~~~~ 175 (315)
T 4asc_A 158 GSDRKCLNKMCVYDPKKF 175 (315)
T ss_dssp CTTSCBCCCEEEEETTTT
T ss_pred CCCCcccceEEEEeCCCC
Confidence 2 46788887654
No 335
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=93.58 E-value=2.1 Score=33.49 Aligned_cols=154 Identities=10% Similarity=0.091 Sum_probs=71.6
Q ss_pred EcCCCCEEEeEeccCC------CCceEEEEEEcCCceeee--ccccccccEEEEEEcCCCCEEEEEeCC-------CeEE
Q 037555 64 CDHQGKLVASSCKAQS------TAAAEIWLWEVGSWKAMG--RLQSHSLTVTQIRFSHDDNLLLSVSRD-------RQFS 128 (298)
Q Consensus 64 ~s~~~~~l~~~~~~~~------~~d~~i~vw~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d-------g~i~ 128 (298)
...++.+++.|+.... .....+.+||..+.+-.. .+.........+.+ ++.+++.|+.+ ..+.
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEE
Confidence 3456788888863100 011237788887654322 22211111122222 56677777654 2466
Q ss_pred EEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC------CCeEEEEEccCCcceeeeeecCCCCCceEE
Q 037555 129 VFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR------DKTVKIWAVENKSSVKQILALPPFNSSVTA 202 (298)
Q Consensus 129 iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~ 202 (298)
+||+.+.. +..+..+...... .+++. .++..++.|+. -..+.+||+.+.+-.. +...+. ...-.+
T Consensus 131 ~yd~~~~~-----W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~-~r~~~~ 201 (318)
T 2woz_A 131 CYDPVAAK-----WSEVKNLPIKVYG-HNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKD-LAPMKT-PRSMFG 201 (318)
T ss_dssp EEETTTTE-----EEEECCCSSCEES-CEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEE-ECCCSS-CCBSCE
T ss_pred EEeCCCCC-----EeECCCCCCcccc-cEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEE-CCCCCC-Ccccce
Confidence 77776532 3322221111111 11222 35666677653 2358899988754322 212221 111122
Q ss_pred EEEeeccccCCccEEEEeecC-----CcEEEEEeeec
Q 037555 203 LSWVGLDRQKNHGFLAVGMES-----GVIELWSISVN 234 (298)
Q Consensus 203 ~~~~~~~~~~~~~~l~~g~~d-----g~i~vwd~~~~ 234 (298)
++.. ++ .+++.|+.+ ..+.+||+.+.
T Consensus 202 ~~~~-~~-----~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 202 VAIH-KG-----KIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp EEEE-TT-----EEEEEEEEETTEEEEEEEEEETTTC
T ss_pred EEEE-CC-----EEEEEcCcCCCCccceEEEEECCCC
Confidence 3322 33 566666543 24667776554
No 336
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=93.30 E-value=2.3 Score=33.20 Aligned_cols=146 Identities=11% Similarity=0.008 Sum_probs=78.7
Q ss_pred EEEEcCCCCEEEeEeccCC---------CCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEe--CCCeEEE
Q 037555 61 SLCCDHQGKLVASSCKAQS---------TAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVS--RDRQFSV 129 (298)
Q Consensus 61 ~~~~s~~~~~l~~~~~~~~---------~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~i 129 (298)
+--++++|..|+-+..... .....|+..++...+... +... . ...|+++++.|+-.. .++.-.|
T Consensus 57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~I 131 (302)
T 3s25_A 57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDPD--P--CIYASLIGNYIYYLHYDTQTATSL 131 (302)
T ss_dssp EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EECS--C--EEEEEEETTEEEEEEESSSSCEEE
T ss_pred eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eecC--C--ccEEEEeCCEEEEEeecCCCCceE
Confidence 3456788888887754210 014678888887664322 2211 1 225677888877665 4455555
Q ss_pred EEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeC-CCeEEEEEccCCcceeeeeecCCCCCceEEEEEeec
Q 037555 130 FAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSR-DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGL 208 (298)
Q Consensus 130 wd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 208 (298)
|.+..... ....+..+.. ..++++++.|+-.+. ...|.+.++....... + +. ... ...+.|.
T Consensus 132 y~~~~dGs------~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~-l--~~---~~~-~~~~~P~ 194 (302)
T 3s25_A 132 YRIRIDGE------EKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEAL-F--YD---CNC-YKPVVLD 194 (302)
T ss_dssp EEEETTSC------CCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEE-E--EC---SCE-EEEEEEE
T ss_pred EEEECCCC------CeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEE-E--eC---CCc-cceeeec
Confidence 55544321 1223333322 456778888876665 5678888876654322 1 22 122 2345687
Q ss_pred cccCCccEEEEeecC--CcEEEEEeee
Q 037555 209 DRQKNHGFLAVGMES--GVIELWSISV 233 (298)
Q Consensus 209 ~~~~~~~~l~~g~~d--g~i~vwd~~~ 233 (298)
+ .+|+-...+ ..|..-++..
T Consensus 195 g-----~~iy~t~~~~~~~I~~~~ldG 216 (302)
T 3s25_A 195 D-----TNVYYMDVNRDNAIVHVNINN 216 (302)
T ss_dssp T-----TEEEEEEGGGTTEEEEECSSS
T ss_pred C-----CEEEEEEcCCCcEEEEEECCC
Confidence 7 566554433 3455555544
No 337
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=93.28 E-value=3 Score=34.48 Aligned_cols=158 Identities=13% Similarity=0.151 Sum_probs=96.3
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC-ceeeeccccc----cccEEEEEEcCCCCEEEEEeC-------C
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS-WKAMGRLQSH----SLTVTQIRFSHDDNLLLSVSR-------D 124 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~-------d 124 (298)
..|.=-.|-.+. .|+... +..|+-|+++. ..+++.|..| ...|..-..+++.++++..+- .
T Consensus 106 e~VvfWkWis~~-~l~lVT------~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~ 178 (494)
T 1bpo_A 106 DDVTFWKWISLN-TVALVT------DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVV 178 (494)
T ss_dssp SCCCEEEEEETT-EEEEEC------SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEE
T ss_pred CCceEEEecCCC-eEEEEc------CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCccc
Confidence 445555664433 344432 57899999964 3455555544 356888888999998765442 4
Q ss_pred CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccC---CCEEEEeeC---CCeEEEEEccCC---ccee---eee-
Q 037555 125 RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPF---GHEFATGSR---DKTVKIWAVENK---SSVK---QIL- 191 (298)
Q Consensus 125 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~---dg~i~~wd~~~~---~~~~---~~~- 191 (298)
|.+.+|..+. ...+.+.+|-.....+...-+ ...|+.+.. .+++++-++... .... ...
T Consensus 179 G~mQLYS~er--------~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv 250 (494)
T 1bpo_A 179 GAMQLYSVDR--------KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDV 250 (494)
T ss_dssp EEEEEEESTT--------CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEEC
T ss_pred ceEEEeeccc--------cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeee
Confidence 7788998875 335556666554443333211 134444443 378999988543 1111 000
Q ss_pred ecC--CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555 192 ALP--PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 192 ~~~--~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
.++ ...+-..++..++.. .++..-+.-|.|++||+.++
T Consensus 251 ~fppe~~~DFPvamqvs~ky-----gviyviTK~G~i~lyDleTg 290 (494)
T 1bpo_A 251 FFPPEAQNDFPVAMQISEKH-----DVVFLITKYGYIHLYDLETG 290 (494)
T ss_dssp CCCTTSTTCCEEEEEEETTT-----TEEEEEETTSEEEEEETTTC
T ss_pred eCCcccccCceeEEEecccC-----CEEEEEecCceEEEEecccc
Confidence 111 123445678888876 68888889999999999988
No 338
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=93.28 E-value=0.9 Score=38.70 Aligned_cols=78 Identities=15% Similarity=0.184 Sum_probs=52.6
Q ss_pred cEEEEEEcCCCCEEEEEeC-CCeEEEEEeccCCC-----C-ccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEE
Q 037555 105 TVTQIRFSHDDNLLLSVSR-DRQFSVFAIQRTGT-----G-EIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVK 177 (298)
Q Consensus 105 ~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~-----~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 177 (298)
....+.++|||++++.++. +.++.++|++.-.. . ........... ..-.....+|.++|+-..+..-|..|.
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvv 402 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVV 402 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEE
Confidence 3457889999998877665 88999999984211 0 00011122222 233457789999997667777899999
Q ss_pred EEEccC
Q 037555 178 IWAVEN 183 (298)
Q Consensus 178 ~wd~~~ 183 (298)
.|++..
T Consensus 403 kWni~~ 408 (638)
T 3sbq_A 403 KWNMEE 408 (638)
T ss_dssp EEEHHH
T ss_pred EEeccH
Confidence 999975
No 339
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=92.98 E-value=6.9 Score=37.74 Aligned_cols=160 Identities=11% Similarity=0.142 Sum_probs=92.7
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCC-ceeeeccccc----cccEEEEEEcCCCCEEEEEe-------CC
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGS-WKAMGRLQSH----SLTVTQIRFSHDDNLLLSVS-------RD 124 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~-~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~-------~d 124 (298)
.+|.=-.|-....+-.++ +..|+-|++.. ..+++.|..| ...|..-..+++.++++..| -.
T Consensus 106 e~VvfWkWis~~~l~lVT-------~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~ 178 (1630)
T 1xi4_A 106 DDVTFWKWISLNTVALVT-------DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVV 178 (1630)
T ss_pred CCceEEEecCCCeeEEEc-------CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCccc
Confidence 456666665444443444 57899999963 3455556555 45677778888888776544 35
Q ss_pred CeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEc--c-CCCEEEEeeC---CCeEEEEEccCC---cceeeee----
Q 037555 125 RQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN--P-FGHEFATGSR---DKTVKIWAVENK---SSVKQIL---- 191 (298)
Q Consensus 125 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~~~l~~~~~---dg~i~~wd~~~~---~~~~~~~---- 191 (298)
|.+.+|..+.. ..+.+.+|-.....+... + ....|+.+.. .+++++-++... .......
T Consensus 179 G~mQLyS~er~--------~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~ 250 (1630)
T 1xi4_A 179 GAMQLYSVDRK--------VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDV 250 (1630)
T ss_pred ceeeeeecccc--------cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccc
Confidence 78889988753 233444554433322221 1 1123332222 368888888543 1111000
Q ss_pred ecC--CCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeeccc
Q 037555 192 ALP--PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRT 236 (298)
Q Consensus 192 ~~~--~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~ 236 (298)
.++ ....-..++..++.. .++..-+.-|.|++||+.++..
T Consensus 251 ~~~~~~~~Dfpv~~~vs~k~-----g~iy~itk~G~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 251 FFPPEAQNDFPVAMQISEKH-----DVVFLITKYGYIHLYDLETGTC 292 (1630)
T ss_pred cCCcccccCcceEEEecccc-----CEEEEEecCceEEEEecccchh
Confidence 011 112334567777665 6788888899999999998843
No 340
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=92.90 E-value=2.7 Score=32.84 Aligned_cols=137 Identities=10% Similarity=0.101 Sum_probs=70.1
Q ss_pred CCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCC--------------CeEEEEE
Q 037555 66 HQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRD--------------RQFSVFA 131 (298)
Q Consensus 66 ~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------------g~i~iwd 131 (298)
.++..+..... ..++.|...+.+... ...+... . +--+++++.+|+-+... ..|+..+
T Consensus 23 ~~g~~iy~~n~---~d~~~ly~~~~dg~~-~~~l~~~--~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~ 94 (302)
T 3s25_A 23 ESDGEVFFSNT---NDNGRLYAMNIDGSN-IHKLSND--T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK 94 (302)
T ss_dssp EETTEEEEEEG---GGTTEEEEEETTSCS-CEEEEEE--E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred EeCCEEEEEeC---CCCceEEEEcCCCCC-CEEccCC--c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence 45666666643 235677777765333 3334322 2 23457788877766543 3455555
Q ss_pred eccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEee--C--CCeEEEEEccCCcceeeeeecCCCCCceEEEEEee
Q 037555 132 IQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGS--R--DKTVKIWAVENKSSVKQILALPPFNSSVTALSWVG 207 (298)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~--dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~ 207 (298)
+.... ...+.. .. ...|++++++|+-.. . ...|...++..... .. +..+.. .++++
T Consensus 95 ~dg~~--------~~~l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~---lt~~~~----~~~~~ 154 (302)
T 3s25_A 95 RNGHG--------STVLDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK-KK---IKNHYL----FTCNT 154 (302)
T ss_dssp TTSCC--------CEEEEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC-EE---EESSCC----CCSEE
T ss_pred CCCCc--------ceEeec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe-EE---EeCCCc----eEeeE
Confidence 55321 111221 11 236778888888776 3 34455556654332 21 211221 45677
Q ss_pred ccccCCccEEEEeecCCcEEEEEeeec
Q 037555 208 LDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 208 ~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
.+. .+..+......|.+.++...
T Consensus 155 ~g~----~iy~t~~g~~~Iy~~~l~g~ 177 (302)
T 3s25_A 155 SDR----YFYYNNPKNGQLYRYDTASQ 177 (302)
T ss_dssp ETT----EEEEECTTTCCEEEEETTTT
T ss_pred ECC----EEEEEeCCCceEEEEECCCC
Confidence 763 34444433567777776543
No 341
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=92.43 E-value=1.6 Score=37.26 Aligned_cols=110 Identities=13% Similarity=0.087 Sum_probs=69.7
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCcee-------------eeccccccccEEEEEEcCCCCEEEEEeC
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKA-------------MGRLQSHSLTVTQIRFSHDDNLLLSVSR 123 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~-------------~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 123 (298)
.....+..+|||++++++++ .+.++.|+++.+... ..... -.......+|.++|+...+..-
T Consensus 323 ksPHGv~vsPDGkyi~v~GK----LsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfi 397 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGK----LSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFI 397 (638)
T ss_dssp SSCCCEEECTTSCEEEEECT----TSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETT
T ss_pred CCCcceeeCCCCCEEEEcCC----CCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeee
Confidence 44567889999999999985 578999999875321 11222 2334577899999976677778
Q ss_pred CCeEEEEEeccCC---CCccceeeeEEeeccCCceEEEE-----EccCCCEEEEee
Q 037555 124 DRQFSVFAIQRTG---TGEIDYQLIARQEAHKRIIWSCS-----WNPFGHEFATGS 171 (298)
Q Consensus 124 dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~v~~~~-----~~~~~~~l~~~~ 171 (298)
|..|..|++...- .+......+..+.-|-.+-...+ -.|+|++|++..
T Consensus 398 dSqvvkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 398 DSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp TTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEE
T ss_pred cceEEEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEec
Confidence 9999999997631 00111234555554443322211 135677777664
No 342
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=92.14 E-value=3.2 Score=31.97 Aligned_cols=129 Identities=11% Similarity=0.048 Sum_probs=69.0
Q ss_pred ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEc
Q 037555 82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN 161 (298)
Q Consensus 82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 161 (298)
|+.|+.|-....-.+..-..-...|..++...+ ..+.-. +|.|..|-........ ........|..++..
T Consensus 80 ~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg-------~~~~~~~~i~~i~~G 149 (282)
T 3qhy_B 80 DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTT-------VPAEAQSGVTALDGG 149 (282)
T ss_dssp TTEEEEEECCTTSTTCCCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTS-------CCGGGGSSEEEEEEC
T ss_pred CCEEEEeeCCCCCCCCCCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCC-------CCccCCCCeEEEEcc
Confidence 677888875432211111111346777766543 344445 9999999865432211 011123456667665
Q ss_pred cCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555 162 PFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 162 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
.... +.-. ||.|..|-......+. ........|..++..... .++. .||.|+.|-....
T Consensus 150 ~~~~--~~l~-~G~v~~wG~n~~gqlg---~p~~~~~~v~~i~~G~~h------s~al--~~G~v~~wG~n~~ 208 (282)
T 3qhy_B 150 VYTA--LAVK-NGGVIAWGDNYFGQTT---VPAEAQSGVDDVAGGIFH------SLAL--KDGKVIAWGDNRY 208 (282)
T ss_dssp SSEE--EEEE-TTEEEEEECCTTSTTS---CCGGGGSSEEEEEECSSE------EEEE--ETTEEEEEECCTT
T ss_pred cCEE--EEEE-CCEEEEecCCCCCCCC---CceecCCCeEEEEecCCE------EEEE--ECCeEEEEECCCC
Confidence 3332 2234 7999999765433322 111123457777765543 3444 5999999976543
No 343
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=92.00 E-value=4.8 Score=33.63 Aligned_cols=110 Identities=9% Similarity=0.072 Sum_probs=59.9
Q ss_pred CceEEEEEcCCCC--EEEeEeccCCCCceEEEEEEcCCce---eeec----cc-----cccccEEEEEEcCC----CCEE
Q 037555 57 NELFSLCCDHQGK--LVASSCKAQSTAAAEIWLWEVGSWK---AMGR----LQ-----SHSLTVTQIRFSHD----DNLL 118 (298)
Q Consensus 57 ~~v~~~~~s~~~~--~l~~~~~~~~~~d~~i~vw~~~~~~---~~~~----~~-----~~~~~v~~~~~~~~----~~~l 118 (298)
.....|+|.|+|. +|++- ..|.|++++..... .+.. +. ........|+|+|+ +.+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~e------r~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lY 87 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILE------KEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLY 87 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEE------TTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEE
T ss_pred CCceEEEECCCCCeEEEEEe------CCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEE
Confidence 4567999999996 55554 37899999754221 1111 11 11456889999996 4444
Q ss_pred EEEeCC------------CeEEEEEeccCCCC---ccceeeeEEee--ccCCceEEEEEccCCCEEEEeeC
Q 037555 119 LSVSRD------------RQFSVFAIQRTGTG---EIDYQLIARQE--AHKRIIWSCSWNPFGHEFATGSR 172 (298)
Q Consensus 119 ~~~~~d------------g~i~iwd~~~~~~~---~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~ 172 (298)
++-+.+ ..|.-|.+...... ....+.+..+. .....-..|+|.||+.++++.+.
T Consensus 88 v~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 88 VSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp EEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred EEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 443321 13444555432111 00122222222 11234678999999987776554
No 344
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=91.44 E-value=3.9 Score=31.50 Aligned_cols=128 Identities=15% Similarity=0.120 Sum_probs=66.3
Q ss_pred ceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEc
Q 037555 82 AAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN 161 (298)
Q Consensus 82 d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 161 (298)
|+.|+.|-....-.+..-......|..++...+- .++. . ||.|..|-......... + ......|..++..
T Consensus 41 ~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG~n~~Gqlg~---P----~~~~~~v~~ia~G 110 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYH-SLAL-K-DGEVIAWGGNEDGQTTV---P----AEARSGVDAIAAG 110 (282)
T ss_dssp TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSE-EEEE-E-TTEEEEEECCTTSTTCC---C----GGGSSSEEEEEEE
T ss_pred CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCE-EEEE-E-CCEEEEeeCCCCCCCCC---C----cccCCCeEEEECc
Confidence 5667777654322111111123356666665432 2333 4 89999998654322110 0 1113467777766
Q ss_pred cCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555 162 PFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 162 ~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 233 (298)
.. ..+.-. ||.|..|-......+. ........|..++..... .++. . ||.|+.|-...
T Consensus 111 ~~--hs~al~-~G~v~~wG~n~~gqlg---~~~~~~~~i~~i~~G~~~------~~~l-~-~G~v~~wG~n~ 168 (282)
T 3qhy_B 111 AW--ASYALK-DGKVIAWGDDSDGQTT---VPAEAQSGVTALDGGVYT------ALAV-K-NGGVIAWGDNY 168 (282)
T ss_dssp TT--EEEEEE-TTEEEEEECCTTSTTS---CCGGGGSSEEEEEECSSE------EEEE-E-TTEEEEEECCT
T ss_pred CC--EEEEEe-CCeEEEecCCCCCcCC---CCccCCCCeEEEEcccCE------EEEE-E-CCEEEEecCCC
Confidence 43 333344 8999999765433322 111123457677665433 2332 3 79999997654
No 345
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=90.79 E-value=5.3 Score=31.89 Aligned_cols=76 Identities=7% Similarity=0.088 Sum_probs=41.2
Q ss_pred ceEEEEEeecccc--CCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCC
Q 037555 199 SVTALSWVGLDRQ--KNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKN 276 (298)
Q Consensus 199 ~v~~~~~~~~~~~--~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 276 (298)
.+..++|.....- -.+.++++....+.|...++..+.. .....+ +......+..|++.|++
T Consensus 272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~-----------~~~~~~--~~~~~~rp~~v~~~pdG---- 334 (353)
T 2g8s_A 272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKV-----------TEDGRI--LTDRGQRIRDVRTGPDG---- 334 (353)
T ss_dssp CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEE-----------EEEEEE--SGGGCCCEEEEEECTTS----
T ss_pred CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeE-----------eeeEEc--ccCCCCceeEEEECCCC----
Confidence 4566777642210 1225666666677788777764310 001111 22234578999999999
Q ss_pred CcceEEEee-eCCCcEEEeEe
Q 037555 277 SRTMQLASC-GADNTVRVFQV 296 (298)
Q Consensus 277 ~~~~~l~s~-~~d~~i~iw~~ 296 (298)
.++++. ..+| +||.+
T Consensus 335 ---~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 335 ---YLYVLTDESSG--ELLKV 350 (353)
T ss_dssp ---CEEEEECSTTE--EEEEE
T ss_pred ---cEEEEEeCCCC--EEEEE
Confidence 555543 3445 45544
No 346
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=90.66 E-value=5.5 Score=31.80 Aligned_cols=56 Identities=9% Similarity=0.106 Sum_probs=38.0
Q ss_pred CCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeec----CCCCCceEEEEEeec
Q 037555 152 KRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILAL----PPFNSSVTALSWVGL 208 (298)
Q Consensus 152 ~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~ 208 (298)
-...+.|+|.|++.++++-...|.|++++...++. ..+..+ .........|+++|+
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~-~~v~~~~~v~~~g~~GllGia~~Pd 90 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK-TELGEVPGVSPSGEGGLLGIALSPD 90 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECTTCCCBTTBSEEEEEECTT
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE-eeecccCceeecCCCCceeeEeccc
Confidence 34568999999998776665589999998655443 222122 123456789999995
No 347
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=90.58 E-value=6.5 Score=32.56 Aligned_cols=219 Identities=7% Similarity=0.044 Sum_probs=123.9
Q ss_pred cceeeeecCcccccccCCCCCceeeeccCCCcccccccC---CC------CceEEeccCC----CceEEEEEcCCCCEEE
Q 037555 6 RETVERHGNDGLDTLESVPDAVPAVFTEPPIEDQLAWHT---LW------PESHKLYGHG----NELFSLCCDHQGKLVA 72 (298)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~------~~~~~~~~h~----~~v~~~~~s~~~~~l~ 72 (298)
++.|+.++...+....-..+.|.--..+ +..--+++.+ -| .+++.+.-|. ..|..-..+++.+.++
T Consensus 88 lQiFnle~K~klks~~~~e~VvfWkWis-~~~l~lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~ 166 (494)
T 1bpo_A 88 LQIFNIEMKSKMKAHTMTDDVTFWKWIS-LNTVALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLL 166 (494)
T ss_dssp EEEEETTTTEEEEEEECSSCCCEEEEEE-TTEEEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEE
T ss_pred EEEEchHHhhhhcceecCCCceEEEecC-CCeEEEEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEE
Confidence 4455555555555554444444333333 2222222221 22 2445554443 3577777788888877
Q ss_pred eEecc--CCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCC---CEEEEEeC---CCeEEEEEeccCC--CCccce
Q 037555 73 SSCKA--QSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDD---NLLLSVSR---DRQFSVFAIQRTG--TGEIDY 142 (298)
Q Consensus 73 ~~~~~--~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~---dg~i~iwd~~~~~--~~~~~~ 142 (298)
..+-. .+.-.|.+.+|..+. +.-+.+.+|......+.+..+. +++.-+.. .+.+++.++.... ......
T Consensus 167 l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~k 245 (494)
T 1bpo_A 167 LTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPK 245 (494)
T ss_dssp EEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCC
T ss_pred EEeecccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccc
Confidence 65441 112357899999874 3445678887766555553221 23444443 2789999997541 111111
Q ss_pred eeeEEeec---cCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCCCCCceEEEEEeeccccCCccEEEE
Q 037555 143 QLIARQEA---HKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPPFNSSVTALSWVGLDRQKNHGFLAV 219 (298)
Q Consensus 143 ~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~ 219 (298)
+.+....+ ..+--.++..++....++..+.-|.|++||+.++.++..-+ + ....|..-+..... .=++.
T Consensus 246 k~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nr-I--s~~~iF~t~~~~~~-----~Gi~~ 317 (494)
T 1bpo_A 246 KAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR-I--SGETIFVTAPHEAT-----AGIIG 317 (494)
T ss_dssp EEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE-C--CSSCEEEEEEETTT-----TEEEE
T ss_pred eeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeec-c--cCCceEEecccCCC-----CcEEE
Confidence 11211111 23445678888888899999999999999999999887432 2 34555544444333 23444
Q ss_pred eecCCcEEEEEeeec
Q 037555 220 GMESGVIELWSISVN 234 (298)
Q Consensus 220 g~~dg~i~vwd~~~~ 234 (298)
-...|.|.-..+...
T Consensus 318 Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 318 VNRKGQVLSVCVEEE 332 (494)
T ss_dssp EETTCEEEEEEECTT
T ss_pred EccCceEEEEEEccc
Confidence 457787776666543
No 348
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=90.34 E-value=7.1 Score=32.60 Aligned_cols=55 Identities=13% Similarity=0.013 Sum_probs=34.7
Q ss_pred ceEEEEEccCCC-EEEEeeCCCeEEEEEccCCcceeeeeecC---------CCCCceEEEEEeec
Q 037555 154 IIWSCSWNPFGH-EFATGSRDKTVKIWAVENKSSVKQILALP---------PFNSSVTALSWVGL 208 (298)
Q Consensus 154 ~v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~~~~~~~~~~---------~~~~~v~~~~~~~~ 208 (298)
.-+.|+|.|++. .|+++...|.|++++.........+..+. ........|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 457899999986 56666788999999754321111111111 11456788999996
No 349
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=86.81 E-value=13 Score=34.33 Aligned_cols=37 Identities=19% Similarity=0.131 Sum_probs=31.1
Q ss_pred ceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeee
Q 037555 154 IIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQI 190 (298)
Q Consensus 154 ~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 190 (298)
.+.+++..++..++++.+.|+++|+|++.+++++...
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 4667777778889999999999999999998877643
No 350
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=86.35 E-value=18 Score=32.30 Aligned_cols=148 Identities=13% Similarity=0.095 Sum_probs=82.0
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeec-ccc----ccccEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGR-LQS----HSLTVTQIRFSHDDNLLLSVSRDRQFSVFA 131 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~-~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 131 (298)
..|.++....+|.+.+.. .+-|..++..+++.... ... ....|.++...+++..|..++. +-+..++
T Consensus 146 ~~i~~i~~d~~g~lWigt-------~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~ 217 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYVGT-------YNGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYF 217 (758)
T ss_dssp SCEEEEEECTTCCEEEEE-------TTEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEE
T ss_pred CeEEEEEEcCCCCEEEEe-------CCCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEc
Confidence 457888888778766644 23477788766543221 111 1234888888777665555554 3567777
Q ss_pred eccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecC-----CCCCceEEEEEe
Q 037555 132 IQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALP-----PFNSSVTALSWV 206 (298)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-----~~~~~v~~~~~~ 206 (298)
..... ......+ ....|.++....++.+.+ |+.+ -+.+++..+..... +.... -....|.++...
T Consensus 218 ~~~~~-----~~~~~~l--~~~~i~~i~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~D 287 (758)
T 3ott_A 218 PSTGQ-----IKQTEAF--HNNSIKSLALDGNGDLLA-GTDN-GLYVYHNDTTPLQH-IIHDSRNIQSLTNNIIWNIFAD 287 (758)
T ss_dssp TTTTE-----EEEEEEE--EEEEEEEEEECTTCCEEE-EETT-EEEEECCTTSCCEE-ECCCTTCTTSCSCSCEEEEEEC
T ss_pred CCCCe-----EEeccCC--CCCeEEEEEEcCCCCEEE-EeCC-ceeEEecCCCcEEE-EEcCCCCcCcCCcCeEEEEEEc
Confidence 65421 1111111 234578888777776555 4444 47888876644321 11110 122457888776
Q ss_pred eccccCCccEEEEeecCCcEEEE
Q 037555 207 GLDRQKNHGFLAVGMESGVIELW 229 (298)
Q Consensus 207 ~~~~~~~~~~l~~g~~dg~i~vw 229 (298)
..+ .|-.|+..| +.++
T Consensus 288 ~~g------~lWiGT~~G-l~~~ 303 (758)
T 3ott_A 288 QEH------NIWLGTDYG-ISLS 303 (758)
T ss_dssp TTC------CEEEEESSS-EEEE
T ss_pred CCC------CEEEEeCCc-cccc
Confidence 665 455666666 5443
No 351
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=83.67 E-value=2.5 Score=33.65 Aligned_cols=109 Identities=7% Similarity=-0.008 Sum_probs=61.5
Q ss_pred EEEeEeccCCCCceEEEEEEcCCceeeeccccc-cccEEEEEE--cC-CCCEEEEE-eCCCeEEEEEeccCCCCccceee
Q 037555 70 LVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSH-SLTVTQIRF--SH-DDNLLLSV-SRDRQFSVFAIQRTGTGEIDYQL 144 (298)
Q Consensus 70 ~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~--~~-~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~ 144 (298)
+++.+ +.||.|.-.|..+|+.+-++... ..++....- .+ ++..++.. +.||.|..++...+ ..
T Consensus 12 ~V~v~-----t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G-------~~ 79 (339)
T 2be1_A 12 ILIAA-----DVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQG-------LQ 79 (339)
T ss_dssp EEEEE-----ETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTE-------EE
T ss_pred EEEEE-----eCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCC-------cE
Confidence 45556 34899999999999887766543 122222110 01 22333333 57999988887652 11
Q ss_pred eEEeec----cCCceEE---EEE-c----cCCCEEEEeeCCCeEEEEEccCCcceeee
Q 037555 145 IARQEA----HKRIIWS---CSW-N----PFGHEFATGSRDKTVKIWAVENKSSVKQI 190 (298)
Q Consensus 145 ~~~~~~----~~~~v~~---~~~-~----~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 190 (298)
...+.. ...++.. ... . ..+..+++|+.+|++...|+++++.+..+
T Consensus 80 ~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~ 137 (339)
T 2be1_A 80 KLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAF 137 (339)
T ss_dssp EEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEE
T ss_pred EeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 111111 1112221 000 0 14568899999999999999998877643
No 352
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=82.43 E-value=15 Score=28.21 Aligned_cols=124 Identities=12% Similarity=0.004 Sum_probs=74.2
Q ss_pred cccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEc
Q 037555 103 SLTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAV 181 (298)
Q Consensus 103 ~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~ 181 (298)
...|..+.... +...++..+.+|.++-..+..-. ..........++. .+.+..+........++..+..|.+..+..
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~ 144 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-YKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSV 144 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-TCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-hhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEh
Confidence 45566654421 46789999999999999876532 1111122222333 345555555555667888899999888876
Q ss_pred cCCccee------eeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555 182 ENKSSVK------QILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 182 ~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
..-.... ....+. ....|..+...+.+ ..++..+..|.++...+..-
T Consensus 145 ~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~-----~~ll~~T~~G~~kr~~~~e~ 197 (276)
T 3no0_A 145 REVPPSTPGARGVQGIKLE-KNDETSGLRIWNGE-----PYLLVITAKGRVKKISHEEI 197 (276)
T ss_dssp GGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSC-----SEEEEEETTSCEEEEEGGGS
T ss_pred hhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCC-----CEEEEEeCCCcEEEeEHHHc
Confidence 4322110 011233 23456665554444 57888889999998887654
No 353
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=78.23 E-value=13 Score=32.03 Aligned_cols=65 Identities=18% Similarity=0.122 Sum_probs=43.2
Q ss_pred CceEEEEEcCCCCEEEeEeccC-------CCCceEEEEEEcCCceeeeccccc-cccEEEEEEcCCCCEEEEE
Q 037555 57 NELFSLCCDHQGKLVASSCKAQ-------STAAAEIWLWEVGSWKAMGRLQSH-SLTVTQIRFSHDDNLLLSV 121 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~-------~~~d~~i~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~ 121 (298)
.....|.|.++|.+.+..-... ......|..++..+++....+.+. ...++.++|+||++.|+++
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 4577899999998877441100 001236777777777765555432 3578999999999877765
No 354
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=77.71 E-value=38 Score=30.14 Aligned_cols=152 Identities=13% Similarity=0.083 Sum_probs=81.7
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCC
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 136 (298)
..|.++....+|. |..+. .+| +..||..+.+...........|.++.. .++ .|..++.+ -|..++.....
T Consensus 63 ~~i~~i~~d~~g~-lWigT-----~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~ 132 (758)
T 3ott_A 63 TRIYCGVIIDNTY-LYMGT-----DNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRK 132 (758)
T ss_dssp SCEEEEEEETTTE-EEEEE-----TTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCC
T ss_pred ceEEEEEEcCCCc-EEEEe-----CCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCe
Confidence 4688888777765 44442 244 789998776543211112335666654 355 45555555 56778865421
Q ss_pred CCccceeeeEEe--eccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeeeeecCC----CCCceEEEEEeeccc
Q 037555 137 TGEIDYQLIARQ--EAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQILALPP----FNSSVTALSWVGLDR 210 (298)
Q Consensus 137 ~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~ 210 (298)
....... ......|.++....++.+.+ ++.+| |..+|..+.+... + .... ....|.++...+.+
T Consensus 133 -----~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~~~~-~-~~~~~~~~~~~~i~~i~~d~~~- 202 (758)
T 3ott_A 133 -----LTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGKFEG-I-PLPVHSSQSNLFVNSLLEDTTR- 202 (758)
T ss_dssp -----EEEECHHHHCCSCSCEEEEEECTTCCEEE-EETTE-EEEEETTTTEEEE-E-CCCCCTTCSSCCEEEEEEETTT-
T ss_pred -----EEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCceEE-e-cCCCccccccceeEEEEEECCC-
Confidence 1111000 01234678888777776555 45444 7778876544221 1 1111 12347777776654
Q ss_pred cCCccEEEEeecCCcEEEEEeee
Q 037555 211 QKNHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 211 ~~~~~~l~~g~~dg~i~vwd~~~ 233 (298)
..|..|+. +-|..++..+
T Consensus 203 ----~~lWigt~-~Gl~~~~~~~ 220 (758)
T 3ott_A 203 ----QCVWIGTE-GYLFQYFPST 220 (758)
T ss_dssp ----TEEEEEEE-EEEEEEETTT
T ss_pred ----CEEEEEEC-CCCeEEcCCC
Confidence 44555654 3477777654
No 355
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=71.41 E-value=8.1 Score=36.50 Aligned_cols=37 Identities=19% Similarity=0.131 Sum_probs=29.7
Q ss_pred ceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeee
Q 037555 154 IIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQI 190 (298)
Q Consensus 154 ~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 190 (298)
.+.+++..++..++++-+.|+++|+|++.+++++...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 3445566677889999999999999999998876643
No 356
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=71.33 E-value=36 Score=26.84 Aligned_cols=165 Identities=11% Similarity=-0.029 Sum_probs=93.1
Q ss_pred CceEEEE-EcC--CCCEEEeEeccCCCCceEEEEEEcCCcee-------eeccccccccEEEEEEcCCCCEEEEEeCCCe
Q 037555 57 NELFSLC-CDH--QGKLVASSCKAQSTAAAEIWLWEVGSWKA-------MGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQ 126 (298)
Q Consensus 57 ~~v~~~~-~s~--~~~~l~~~~~~~~~~d~~i~vw~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 126 (298)
..|.++. ... +..+++..+ .+|.++.-.+..... ...+.. ...+..+........++..+..|.
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T-----~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~ 168 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLAT-----RNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQ 168 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEE-----TTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSE
T ss_pred CEEEEEEEeccCCCCCEEEEEc-----CCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCe
Confidence 4455554 332 467788874 489999988765322 222333 344555555555567888888999
Q ss_pred EEEEEec--cCCCCcc--ceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCccee----eeee--cCCC
Q 037555 127 FSVFAIQ--RTGTGEI--DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVK----QILA--LPPF 196 (298)
Q Consensus 127 i~iwd~~--~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~----~~~~--~~~~ 196 (298)
+..+... .-..... .+.....+. ....|.++...+.+..++..+..|.++.-.+....... -+.. +...
T Consensus 169 ~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~ 247 (327)
T 3uc1_A 169 SIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRR 247 (327)
T ss_dssp EEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTT
T ss_pred EEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCC
Confidence 9888876 3211100 122222232 24556666666666789999999999988765432211 1112 2221
Q ss_pred CCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555 197 NSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 197 ~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 233 (298)
...+..+...... ..++..+.+|.+.-++...
T Consensus 248 ~d~lv~~~~~~~~-----~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 248 RGRLVGALIVDDD-----SELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp TCSEEEEEEECTT-----CEEEEEEGGGCEEEEEGGG
T ss_pred CCeEEEEEEeCCC-----ccEEEEcCCCeEEEEehhh
Confidence 3345444443333 4566667778777777654
No 357
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=70.93 E-value=31 Score=27.40 Aligned_cols=112 Identities=5% Similarity=-0.020 Sum_probs=54.9
Q ss_pred CEEEEEeCCCeEEEEEeccCCCCccceeeeEEeecc-CCceEEEEE--cc-CCCEEEEe-eCCCeEEEEEccCCcceeee
Q 037555 116 NLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAH-KRIIWSCSW--NP-FGHEFATG-SRDKTVKIWAVENKSSVKQI 190 (298)
Q Consensus 116 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~--~~-~~~~l~~~-~~dg~i~~wd~~~~~~~~~~ 190 (298)
.+++.++.||.|.-+|..++ +..=.+... ..++....- .+ ++..++.. +.||.|..+|..++.....+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG-------~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~ 83 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNG-------HIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPL 83 (339)
T ss_dssp EEEEEEETTSCEEEEETTTT-------EEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCC-------cEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeee
Confidence 36777888888887776653 222222211 111111100 01 22333333 58999999998876443322
Q ss_pred eecCC--CCCceEEEEEeecc----ccCCccEEEEeecCCcEEEEEeeeccc
Q 037555 191 LALPP--FNSSVTALSWVGLD----RQKNHGFLAVGMESGVIELWSISVNRT 236 (298)
Q Consensus 191 ~~~~~--~~~~v~~~~~~~~~----~~~~~~~l~~g~~dg~i~vwd~~~~~~ 236 (298)
..+. ...++.. .=.|-- ....+..+++|+.+|.+...|+++++.
T Consensus 84 -~~~~lv~~SP~~~-~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~ 133 (339)
T 2be1_A 84 -SIRQLVSTSPLHL-KTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEI 133 (339)
T ss_dssp -EHHHHHTTCSEEE-ECC----------CCEEEEECEEEEEEEEEETTTCCE
T ss_pred -ccccceecccccc-CCCceeecccccccCCEEEEEecCCEEEEEECCCCcE
Confidence 1110 1111111 000000 000115788999999999888887754
No 358
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=69.66 E-value=18 Score=31.27 Aligned_cols=64 Identities=19% Similarity=0.107 Sum_probs=41.6
Q ss_pred ceEEEEEcCCCCEEEeEeccCC-------CCceEEEEEEcCCceeeecccc-ccccEEEEEEcCCCCEEEEE
Q 037555 58 ELFSLCCDHQGKLVASSCKAQS-------TAAAEIWLWEVGSWKAMGRLQS-HSLTVTQIRFSHDDNLLLSV 121 (298)
Q Consensus 58 ~v~~~~~s~~~~~l~~~~~~~~-------~~d~~i~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~ 121 (298)
..--|+|+|.|.+++.--.+.. .....+.+.+..+++....+.+ -...++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 3567899999997766521100 0123566677777776555544 34689999999998876653
No 359
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=65.87 E-value=52 Score=26.62 Aligned_cols=166 Identities=8% Similarity=0.073 Sum_probs=91.0
Q ss_pred CceEEEEEcCCCCEEEeEec--cC-----C---CCceEEEEEEcCCc--eeeecccc------ccccEEEEEEc---CC-
Q 037555 57 NELFSLCCDHQGKLVASSCK--AQ-----S---TAAAEIWLWEVGSW--KAMGRLQS------HSLTVTQIRFS---HD- 114 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~--~~-----~---~~d~~i~vw~~~~~--~~~~~~~~------~~~~v~~~~~~---~~- 114 (298)
-.|..+...+++++=+.=.. +. . ....+|.+||+.+. +.++++.- ....+..+++. |+
T Consensus 87 vsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~ 166 (381)
T 3q6k_A 87 TSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKG 166 (381)
T ss_dssp SCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTT
T ss_pred EEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCC
Confidence 36788888877765332111 00 0 11347999999999 88766532 24567888887 22
Q ss_pred ---CCEEEEE-eCCCeEEEEEeccCCCCccceeee-----------EEeec----cCCceEEEEEccC----CCEEEEee
Q 037555 115 ---DNLLLSV-SRDRQFSVFAIQRTGTGEIDYQLI-----------ARQEA----HKRIIWSCSWNPF----GHEFATGS 171 (298)
Q Consensus 115 ---~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~~----~~~~v~~~~~~~~----~~~l~~~~ 171 (298)
+.++..+ +..+-|.++|+.++.. ++.. ....+ -...+..|+.+|+ ++.|+...
T Consensus 167 ~c~~~~aYItD~~~~gLIVydl~~~~s----wRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~p 242 (381)
T 3q6k_A 167 DCSETFVYITNFLRGALFIYDHKKQDS----WNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLA 242 (381)
T ss_dssp TSCSEEEEEEETTTTEEEEEETTTTEE----EEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEE
T ss_pred CCCccEEEEEcCCCCcEEEEECCCCcE----EEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEE
Confidence 2343333 3467888999886542 1111 00111 1246888999997 67777766
Q ss_pred CCCeEEEEEccC-----CcceeeeeecCCCC---CceEEEEEe-eccccCCccEEEEeecCCcEEEEEeee
Q 037555 172 RDKTVKIWAVEN-----KSSVKQILALPPFN---SSVTALSWV-GLDRQKNHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 172 ~dg~i~~wd~~~-----~~~~~~~~~~~~~~---~~v~~~~~~-~~~~~~~~~~l~~g~~dg~i~vwd~~~ 233 (298)
-.+. ++|.+.+ ......+..+ +.. ..-..++.. ..+ .++++--+...|..|+...
T Consensus 243 lss~-~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~~D~~~G-----~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 243 GSAI-KVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALAYDPKTK-----VIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp SSCS-EEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEEECTTTC-----EEEEEESSSSEEEEEETTS
T ss_pred CCCC-cEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEEEeCCCC-----eEEEEeccCCeEEEEeCCC
Confidence 5442 4444432 1111111111 111 222344554 344 5666666778899999865
No 360
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=59.51 E-value=13 Score=35.05 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=23.2
Q ss_pred eEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 262 AVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 262 ~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
.+.+++..++. .++++-+.|+++|||++.
T Consensus 239 ~~vs~~~~~~~-------~~lftL~~D~~LRiWsl~ 267 (1139)
T 4fhn_B 239 TIISMIFLSTY-------NVLVMLSLDYKLKVLDLS 267 (1139)
T ss_dssp CBSCCEEETTT-------TEEEEEBTTCEEEEEETT
T ss_pred eeEEeeccCCc-------cEEEEEeCCCEEEEEECC
Confidence 44556666666 799999999999999974
No 361
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=59.32 E-value=45 Score=28.88 Aligned_cols=58 Identities=12% Similarity=0.055 Sum_probs=34.7
Q ss_pred EEEEEEcCCCCEEEEEeCC----------C--eEEEEEeccCCCCccceeeeEEeec-cCCceEEEEEccCCCEEEEe
Q 037555 106 VTQIRFSHDDNLLLSVSRD----------R--QFSVFAIQRTGTGEIDYQLIARQEA-HKRIIWSCSWNPFGHEFATG 170 (298)
Q Consensus 106 v~~~~~~~~~~~l~~~~~d----------g--~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~ 170 (298)
.=.|+|+|.|++++.-..+ + .+.+.+... .++.+.+.. ...+++.++|+|+++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~-------g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT-------GEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTT-------CCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCC-------CeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 3568999999866654332 1 233333332 222232332 45789999999999877665
No 362
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=55.69 E-value=71 Score=24.87 Aligned_cols=203 Identities=8% Similarity=0.018 Sum_probs=106.6
Q ss_pred CCCCEEEeEeccCCCCceEEEEEEcCCceeee---------ccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCC
Q 037555 66 HQGKLVASSCKAQSTAAAEIWLWEVGSWKAMG---------RLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTG 136 (298)
Q Consensus 66 ~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 136 (298)
++...+++.+ .+|.|+--.+...+... .+.. ...+..+........++..+..|.++-+....-.
T Consensus 6 ~~e~~~v~~T-----~~G~iKr~~~~~~~~~~~~~~g~~~~~lke-~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip 79 (312)
T 1suu_A 6 QKENIVVMLT-----KKGFLKRLSQNEYKLQGTGGKGLSSFDLND-GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIK 79 (312)
T ss_dssp --CEEEEEEE-----TTCBEEEEEGGGSCBCCSSCCCEECCCCCT-TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSC
T ss_pred CCCCEEEEEe-----CCCEEEEeEHHHhhccccCCCCceecccCC-CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCC
Confidence 3455666664 48888888765432211 1222 2344455444455678888889998877764321
Q ss_pred CCcc--ceee---eEEeeccCCceEEEEEcc---CCCEEEEeeCCCeEEEEEccCCcce----eeeeecCCCCCceEEEE
Q 037555 137 TGEI--DYQL---IARQEAHKRIIWSCSWNP---FGHEFATGSRDKTVKIWAVENKSSV----KQILALPPFNSSVTALS 204 (298)
Q Consensus 137 ~~~~--~~~~---~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~~v~~~~ 204 (298)
.... .+.. ...+.. ...|..+...+ +..+++..+..|.++...+...... .....+.. ...+..+.
T Consensus 80 ~~~r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~ 157 (312)
T 1suu_A 80 DSSRASKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAE 157 (312)
T ss_dssp C-------CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEE
T ss_pred CCCccCCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEE
Confidence 1100 0010 111222 23444443332 4567888899999998887543211 11113433 45566665
Q ss_pred EeeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEe
Q 037555 205 WVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLAS 284 (298)
Q Consensus 205 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s 284 (298)
..... ..++..+.+|.+..+....-+..... ..-...+. +.. ...|.++..-.++ ..|++
T Consensus 158 ~~~~~-----~~i~l~T~~G~~~r~~~~ev~~~gR~------~~Gv~~i~-L~~-~d~vv~~~~v~~~-------~~l~~ 217 (312)
T 1suu_A 158 IVFKD-----EKVICLSKKGSAFIFNSRDVRLTNRG------TQGVCGMK-LKE-GDLFVKVLSVKEN-------PYLLI 217 (312)
T ss_dssp EECTT-----CEEEEEETTSEEEEEEGGGSCBCCTT------BCCEECCC-CCT-TCCEEEEEECTTC-------SEEEE
T ss_pred EeCCC-----CEEEEEeCCCcEEEEEHHHccccCCC------CCCeEeEE-eCC-CCEEEEEEEECCC-------CeEEE
Confidence 55433 56778888999988887652111100 01112221 222 3455555544444 46778
Q ss_pred eeCCCcEEEeEe
Q 037555 285 CGADNTVRVFQV 296 (298)
Q Consensus 285 ~~~d~~i~iw~~ 296 (298)
.+..|..+..++
T Consensus 218 vt~~G~~kr~~~ 229 (312)
T 1suu_A 218 VSENGYGKRLNM 229 (312)
T ss_dssp EETTSEEEEEEG
T ss_pred EECCCceEEEEH
Confidence 888888777665
No 363
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=55.51 E-value=80 Score=25.39 Aligned_cols=156 Identities=10% Similarity=0.027 Sum_probs=0.0
Q ss_pred CCCCEEEEEeCCCeEEEEEeccCCCCcccee--------eeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccC-
Q 037555 113 HDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQ--------LIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVEN- 183 (298)
Q Consensus 113 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~- 183 (298)
|+...+++.+.+|.|+--.+.. +. ....-......+..+........++..+..|.+.-+....
T Consensus 5 ~~e~~~v~lT~~GyIKr~~l~~-------y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~ei 77 (370)
T 3l6v_A 5 APEDVVVTLSHAGYAKRQPVSA-------YRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQL 77 (370)
T ss_dssp CCCCEEEEEESSCEEEEEEHHH-------HHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGS
T ss_pred cCCCEEEEEeCCCEEEEeeHHH-------hhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHC
Q ss_pred --------CcceeeeeecCCCCCceEEEEEee--ccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeee
Q 037555 184 --------KSSVKQILALPPFNSSVTALSWVG--LDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRF 253 (298)
Q Consensus 184 --------~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 253 (298)
+..+..+..+.....-+..+.... .. .+|+..+..|.++...+........ .-...+
T Consensus 78 p~~~r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~-----~~ll~~T~~G~vKrt~l~e~~~~~~--------~G~~ai 144 (370)
T 3l6v_A 78 PEAGSNARGRPIINWIPLESGERVQAVLPVREYADN-----RYVFMATRNGTVKKTPLSEFAFRLA--------RGKIAI 144 (370)
T ss_dssp CBCCTTSCCEEGGGSCCCCTTCCEEEEEEESCCCTT-----CEEEEEETTSEEEEEEGGGGCSCCT--------TCEESS
T ss_pred cCCCcccCCcCHhhccCCCCCCEEEEEEEeccCCCC-----cEEEEEeCCCeEEEeEHHHhhcccC--------CceEEE
Q ss_pred ccCCcccceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 254 DPFACHVAAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 254 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
. +.. ...+..+...... ..|+..+.+|.+..++..
T Consensus 145 ~-L~~-~d~lv~v~~~~~~-------~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 145 N-LDE-GDALVGVALTDGD-------RDVLLFASNGKTVRFGES 179 (370)
T ss_dssp C-CCT-TCCEEEEEEECSC-------CEEEEEETTSEEEEEEGG
T ss_pred E-eCC-CCEEEEEEEeCCC-------ceEEEEeCCCeEEEEEcc
No 364
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=52.24 E-value=23 Score=31.37 Aligned_cols=35 Identities=11% Similarity=0.239 Sum_probs=27.3
Q ss_pred ceEEEEEccCCCEEEEeeCCCeEEEEEccCCcceeee
Q 037555 154 IIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVKQI 190 (298)
Q Consensus 154 ~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 190 (298)
.|.++.+ +..++++-+.|.++|+|++++++++...
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~ 257 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDY 257 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEee
Confidence 3554444 4779999999999999999998876543
No 365
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=52.20 E-value=73 Score=23.98 Aligned_cols=80 Identities=11% Similarity=0.021 Sum_probs=49.5
Q ss_pred cccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEc-cCCCEEEEeeCCCeEEEEEc
Q 037555 103 SLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWN-PFGHEFATGSRDKTVKIWAV 181 (298)
Q Consensus 103 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~~wd~ 181 (298)
...|.++....++.+++.++..|.++...+..-............+.. .+.+..+... ..+..++..+.+|.+..+..
T Consensus 83 ~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~-~d~lv~~~~~~~~~~~i~l~T~~G~~lrf~~ 161 (256)
T 1zvt_A 83 GATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE-NAHVMPPVVIEDASDMLLAITQAGRMLMFPV 161 (256)
T ss_dssp TCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT-TCCBCCCEECCCTTCEEEEEETTSEEEEEEG
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC-CCEEEEEEEecCCCCEEEEEcCCCeEEEEEH
Confidence 345666644345667889999999999988653221111233333333 2344444444 34567888899999988887
Q ss_pred cC
Q 037555 182 EN 183 (298)
Q Consensus 182 ~~ 183 (298)
..
T Consensus 162 ~e 163 (256)
T 1zvt_A 162 SD 163 (256)
T ss_dssp GG
T ss_pred HH
Confidence 64
No 366
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=51.63 E-value=1.5e+02 Score=27.43 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=25.0
Q ss_pred ceEEEEEeecCCCCCCCcceEEEeeeCCCcEEEeEec
Q 037555 261 AAVNRMAWKTHEKPKNSRTMQLASCGADNTVRVFQVN 297 (298)
Q Consensus 261 ~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw~~~ 297 (298)
..+.+++..++. .++++-+.|+++|+|++.
T Consensus 236 ~~~~~~~~~~~~-------~~lftl~~D~~LRiWsl~ 265 (950)
T 4gq2_M 236 NTIISMIFLSTY-------NVLVMLSLDYKLKVLDLS 265 (950)
T ss_dssp TCEEEEEEETTT-------TEEEEEETTCEEEEEETT
T ss_pred ceEEEEeecCCC-------cEEEEEECCCEEEEEECC
Confidence 356777777777 799999999999999974
No 367
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=50.18 E-value=89 Score=26.97 Aligned_cols=60 Identities=12% Similarity=0.059 Sum_probs=36.4
Q ss_pred cEEEEEEcCCCCEEEEEeCC------------CeEEEEEeccCCCCccceeeeEEeec-cCCceEEEEEccCCCEEEEee
Q 037555 105 TVTQIRFSHDDNLLLSVSRD------------RQFSVFAIQRTGTGEIDYQLIARQEA-HKRIIWSCSWNPFGHEFATGS 171 (298)
Q Consensus 105 ~v~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~ 171 (298)
....|.|.++|.+.+..... ..+..++... ..+...+.. ....++.++|+||++.|++.-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~t-------Gel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT-------GEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTT-------CCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCC-------CeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 45679999999877743211 1344444332 222333332 245789999999998887764
No 368
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=49.76 E-value=1e+02 Score=24.92 Aligned_cols=130 Identities=7% Similarity=-0.003 Sum_probs=65.3
Q ss_pred CCceEEEEEc---cC----CCEEEEee-CCCeEEEEEccCCcceeeeeec--C---------CC----CCceEEEEEeec
Q 037555 152 KRIIWSCSWN---PF----GHEFATGS-RDKTVKIWAVENKSSVKQILAL--P---------PF----NSSVTALSWVGL 208 (298)
Q Consensus 152 ~~~v~~~~~~---~~----~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~~--~---------~~----~~~v~~~~~~~~ 208 (298)
...+..+.+. |. +.+++.+. ..+-|.++|+.+++..+.+... . +. ...+..|+++|+
T Consensus 151 ~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~ 230 (381)
T 3q6k_A 151 PTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDR 230 (381)
T ss_dssp GGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCC
T ss_pred CCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCC
Confidence 3457778777 22 34444444 4677999999987765432110 0 00 236778888887
Q ss_pred cccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEee-cCCCCCCCcceEEEeeeC
Q 037555 209 DRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWK-THEKPKNSRTMQLASCGA 287 (298)
Q Consensus 209 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~l~s~~~ 287 (298)
.... +..|.-....+ -++|.+.+........ ...+..+.+ ++....-..++.. .+| .++++--.
T Consensus 231 ~~~~-~~~LYf~plss-~~ly~V~T~~L~~~~~-----~~~v~~~G~-kg~~s~~~~~~~D~~~G-------~ly~~~~~ 295 (381)
T 3q6k_A 231 DSEG-NRPAYYLAGSA-IKVYSVNTKELKQKGG-----KLNPELLGN-RGKYNDAIALAYDPKTK-------VIFFAEAN 295 (381)
T ss_dssp CTTS-CCEEEEEESSC-SEEEEEEHHHHSSTTC-----CCCCEEEEE-CCTTCCEEEEEECTTTC-------EEEEEESS
T ss_pred cCCC-CeEEEEEECCC-CcEEEEEHHHhhCcch-----hhceEEeee-cCCCCCcceEEEeCCCC-------eEEEEecc
Confidence 3111 14555544433 3455554431111100 012222211 1111222345554 455 67777777
Q ss_pred CCcEEEeEe
Q 037555 288 DNTVRVFQV 296 (298)
Q Consensus 288 d~~i~iw~~ 296 (298)
...|..|+.
T Consensus 296 ~~aI~~w~~ 304 (381)
T 3q6k_A 296 TKQVSCWNT 304 (381)
T ss_dssp SSEEEEEET
T ss_pred CCeEEEEeC
Confidence 888888875
No 369
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=49.29 E-value=1e+02 Score=24.69 Aligned_cols=67 Identities=12% Similarity=0.021 Sum_probs=33.5
Q ss_pred CceEEEEEccC-CCEEEEeeCCCeEEEEEccCCcceeeeee-cCC---------CCCceEEEEEeeccccCCccEEEEee
Q 037555 153 RIIWSCSWNPF-GHEFATGSRDKTVKIWAVENKSSVKQILA-LPP---------FNSSVTALSWVGLDRQKNHGFLAVGM 221 (298)
Q Consensus 153 ~~v~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~---------~~~~v~~~~~~~~~~~~~~~~l~~g~ 221 (298)
..+..|.++|. ...++.+..++.|...+ ..++....+.. ... ....+.++.+.|... ..|..+.
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~----~~l~vg~ 251 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAP----DILYQQN 251 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSST----TEEEEEE
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCC----CEEEEEc
Confidence 45788999883 34555554444443322 22222221111 000 013478899988642 4666666
Q ss_pred cCC
Q 037555 222 ESG 224 (298)
Q Consensus 222 ~dg 224 (298)
..+
T Consensus 252 ~~g 254 (394)
T 3b7f_A 252 HCG 254 (394)
T ss_dssp TTE
T ss_pred CCe
Confidence 544
No 370
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=48.92 E-value=30 Score=30.70 Aligned_cols=37 Identities=5% Similarity=0.216 Sum_probs=27.7
Q ss_pred CceEEEEEcCCCCEEEeEeccCCCCceEEEEEEcCCceeeeccc
Q 037555 57 NELFSLCCDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMGRLQ 100 (298)
Q Consensus 57 ~~v~~~~~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~~~~ 100 (298)
..|.++.+ +..++++-+. |.++|+|++.+++++.+..
T Consensus 222 ~~Is~~~~--~~~fLftL~~-----Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQ-----NCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp CEEEEEEE--TTTEEEEEET-----TCEEEEEETTTTEEEEEEE
T ss_pred ceEEEecc--CCcEEEEEEc-----CCeEEEEEcCCCceEEeec
Confidence 34666655 3678888854 9999999999998776543
No 371
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=48.58 E-value=96 Score=24.31 Aligned_cols=123 Identities=7% Similarity=0.008 Sum_probs=70.7
Q ss_pred ccEEEE-EEcC--CCCEEEEEeCCCeEEEEEeccCCCCc-cceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEE
Q 037555 104 LTVTQI-RFSH--DDNLLLSVSRDRQFSVFAIQRTGTGE-IDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIW 179 (298)
Q Consensus 104 ~~v~~~-~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 179 (298)
..|..+ ...+ ++.+++.++.+|.++-..+..-.... ..+.....+... +.+..+........++..+.+|.+..+
T Consensus 92 e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l~T~~G~~irf 170 (323)
T 1wp5_A 92 EEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELFLVTHNGYALWF 170 (323)
T ss_dssp CCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEEEEETTSEEEEE
T ss_pred CEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEE
Confidence 345544 3432 25689999999999999886422111 002222223322 455555554456678888889998888
Q ss_pred EccCCccee------eeeecCCCCCceEEEEEeeccccCCcc-EEEEeecCCcEEEEEeee
Q 037555 180 AVENKSSVK------QILALPPFNSSVTALSWVGLDRQKNHG-FLAVGMESGVIELWSISV 233 (298)
Q Consensus 180 d~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~-~l~~g~~dg~i~vwd~~~ 233 (298)
....-.... ....+. ....|.++...+.+ . .+++.+..|..+..++..
T Consensus 171 ~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~-----~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 171 DESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSK-----DESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCT-----TCEEEEEETTSEEEEEEGGG
T ss_pred EHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCC-----CcEEEEEECCCceEEEEHHH
Confidence 775422111 111222 23456666554433 3 688888889888877654
No 372
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=47.15 E-value=1.6e+02 Score=26.48 Aligned_cols=114 Identities=10% Similarity=-0.012 Sum_probs=56.6
Q ss_pred cccEEEEEEcCC-CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeec----cCCceEEEEEccC-CCEEEEeeCCCe-
Q 037555 103 SLTVTQIRFSHD-DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEA----HKRIIWSCSWNPF-GHEFATGSRDKT- 175 (298)
Q Consensus 103 ~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~-~~~l~~~~~dg~- 175 (298)
...|.+|+++|. ...+++++..+.|...+ .... .+..+..... ....+..|+++|. .+.++++..+..
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~--DgG~---tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~ 88 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD--AGTS---KWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVG 88 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE--TTTT---EEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTT
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec--CCCC---CeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCC
Confidence 458999999995 45666677666654333 2111 0333221110 1346899999984 344555443211
Q ss_pred ---EEEEEcc-CCcceeeeee-cC-----CCCCceEEEEEeeccccCCccEEEEeecCCc
Q 037555 176 ---VKIWAVE-NKSSVKQILA-LP-----PFNSSVTALSWVGLDRQKNHGFLAVGMESGV 225 (298)
Q Consensus 176 ---i~~wd~~-~~~~~~~~~~-~~-----~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~ 225 (298)
-.||... .++....+.. +. .....+..++++|... ..+..+...+.
T Consensus 89 ~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~----~~v~~g~~~~g 144 (789)
T 1sqj_A 89 DEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNS----NEVWMGTRTEG 144 (789)
T ss_dssp SSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEE----EEEEEECSSSC
T ss_pred CcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCC----CEEEEEeccCC
Confidence 2344333 3333332211 01 0011356788887653 56666664443
No 373
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=46.95 E-value=90 Score=23.48 Aligned_cols=105 Identities=9% Similarity=-0.085 Sum_probs=55.7
Q ss_pred EEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCC---c----ceee
Q 037555 117 LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENK---S----SVKQ 189 (298)
Q Consensus 117 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~---~----~~~~ 189 (298)
.+++.+.+|.|+--...... .....++.. +.+..+........++..+..|.++-+....- + .+..
T Consensus 4 v~v~lT~~G~iKr~~~~~~~------~~~~~lke~-D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~ 76 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDID------APGLNYKAG-DSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTG 76 (256)
T ss_dssp EEEEEETTSEEEEEESSCCC------STTSCCCTT-CCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGG
T ss_pred EEEEEeCCCEEEEeeCCcCC------ceeccCCCC-CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeee
Confidence 45677888888765543211 001122333 33444433334556666777888766554321 1 1111
Q ss_pred eeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555 190 ILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 190 ~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
...+. ....|.++.....+ .+|+..+..|.++...+...
T Consensus 77 ~i~L~-~~e~Iv~~~~~~~~-----~~lll~T~~G~~Kr~~~~e~ 115 (256)
T 1zvt_A 77 KLTLP-PGATVDHMLMESDD-----QKLLMASDAGYGFVCTFNDL 115 (256)
T ss_dssp TCCCC-TTCCEEEEECCCTT-----CEEEEEBTTSEEEEEEGGGG
T ss_pred eecCC-CCCEEEEEEEeCCC-----CEEEEEeCCCeEEEeEHHHh
Confidence 11232 23456666443333 56888899999999887654
No 374
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=44.89 E-value=1.1e+02 Score=24.00 Aligned_cols=125 Identities=10% Similarity=0.078 Sum_probs=73.9
Q ss_pred cccEEEEE-EcC--CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEE
Q 037555 103 SLTVTQIR-FSH--DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIW 179 (298)
Q Consensus 103 ~~~v~~~~-~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 179 (298)
...|..+. +.. +...++..+.+|.++-..+..-............+.. .+.+..+........++..+..|.+..+
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf 172 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRF 172 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEE
Confidence 34455543 432 5679999999999999887653211111222223333 3445555554555678888889998888
Q ss_pred Ecc--CCccee------eeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555 180 AVE--NKSSVK------QILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 180 d~~--~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
... .-.... ....+. ....|.++...+.+ ..++..+..|.++.-.+...
T Consensus 173 ~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~-----~~ll~~T~~G~~Krt~l~e~ 229 (327)
T 3uc1_A 173 SATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREG-----TYLLVATSGGYAKRTAIEEY 229 (327)
T ss_dssp ECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTT-----CEEEEEETTSEEEEEEGGGS
T ss_pred ECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCC-----CEEEEEeCCCcEEEEEHHHc
Confidence 776 321110 111232 24456666655544 57888889999988876543
No 375
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=42.95 E-value=85 Score=26.80 Aligned_cols=72 Identities=7% Similarity=0.076 Sum_probs=42.3
Q ss_pred EEEEEEcCC--CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceE-EEEEccCCCEEEEeeCCCeEEE
Q 037555 106 VTQIRFSHD--DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIW-SCSWNPFGHEFATGSRDKTVKI 178 (298)
Q Consensus 106 v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~~ 178 (298)
+++++.... ...++.|+.+|.|.-..+............ ..+.....+|. .|.++++..+|++++..+.+++
T Consensus 402 lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~-~~v~~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kv 476 (539)
T 3al9_A 402 LTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEM-VSVFKDGSPILRDMAFSINQLYLYVMSERQVTRV 476 (539)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEE-EECCTTCCCCCSCCEECTTSSEEEEECSSEEEEE
T ss_pred eEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEE-EEeecCCCccccceEEccCCCeEEEEecccccee
Confidence 445555442 236778899998876655432111000111 11222346775 8999999999999987765554
No 376
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=41.55 E-value=1.1e+02 Score=26.03 Aligned_cols=69 Identities=12% Similarity=0.089 Sum_probs=42.4
Q ss_pred ceEEEEEccCC--CEEEEeeCCCeEEEEEccCCc----ceeeeeecCCCCCceE-EEEEeeccccCCccEEEEeecCCcE
Q 037555 154 IIWSCSWNPFG--HEFATGSRDKTVKIWAVENKS----SVKQILALPPFNSSVT-ALSWVGLDRQKNHGFLAVGMESGVI 226 (298)
Q Consensus 154 ~v~~~~~~~~~--~~l~~~~~dg~i~~wd~~~~~----~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~l~~g~~dg~i 226 (298)
.+++|+....+ ..++.|+.+|.|+-..+.... ....+ .+.....+|. .|.+++.. ..|++++.++.+
T Consensus 401 ~lT~vav~~~~~~tV~flGT~~G~l~KV~l~~~~~~~~~~e~~-~v~~~~~pv~~~l~~~~~~-----~~Lyv~s~~~V~ 474 (539)
T 3al9_A 401 RLTSVASYVYNGYSVVFVGTKSGKLKKIRADGPPHGGVQYEMV-SVFKDGSPILRDMAFSINQ-----LYLYVMSERQVT 474 (539)
T ss_dssp CEEEEEEEEETTEEEEEEEETTSEEEEEEEEETTTEEEEEEEE-ECCTTCCCCCSCCEECTTS-----SEEEEECSSEEE
T ss_pred ceEEEEeeccCCeEEEEEEcCCCeEEEEEeCCCCccceeEEEE-EeecCCCccccceEEccCC-----CeEEEEeccccc
Confidence 35566655433 467888999998766554322 12222 2222356775 89999877 788888876655
Q ss_pred EE
Q 037555 227 EL 228 (298)
Q Consensus 227 ~v 228 (298)
+|
T Consensus 475 kv 476 (539)
T 3al9_A 475 RV 476 (539)
T ss_dssp EE
T ss_pred ee
Confidence 44
No 377
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=40.15 E-value=1.2e+02 Score=25.56 Aligned_cols=69 Identities=14% Similarity=0.154 Sum_probs=42.1
Q ss_pred ceEEEEEccC----C--CEEEEeeCCCeEEEEEcc-CCc-------ceeeeeecCCCCCceEEEEEeeccccCCccEEEE
Q 037555 154 IIWSCSWNPF----G--HEFATGSRDKTVKIWAVE-NKS-------SVKQILALPPFNSSVTALSWVGLDRQKNHGFLAV 219 (298)
Q Consensus 154 ~v~~~~~~~~----~--~~l~~~~~dg~i~~wd~~-~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~ 219 (298)
..++|+...- + ..++.|+.+|.|+-.-+. ... .+..+..+ ....+|..|.+++.. ..|.+
T Consensus 405 ~lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~-~~~~pI~~m~l~~~~-----~~Lyv 478 (495)
T 1q47_A 405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVF-REPTTISAMELSTKQ-----QQLYI 478 (495)
T ss_dssp CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCS-SSCCCCCEEEEETTT-----TEEEE
T ss_pred ceEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeec-CCCCccceEEEcCCC-----CEEEE
Confidence 3566666532 3 457788999987544332 211 12222222 245789999999987 78888
Q ss_pred eecCCcEEE
Q 037555 220 GMESGVIEL 228 (298)
Q Consensus 220 g~~dg~i~v 228 (298)
++.++.++|
T Consensus 479 ~s~~~V~~v 487 (495)
T 1q47_A 479 GSTAGVAQL 487 (495)
T ss_dssp EBSSCEEEE
T ss_pred EECCeEEEE
Confidence 888776554
No 378
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=36.39 E-value=1.7e+02 Score=25.75 Aligned_cols=62 Identities=6% Similarity=0.029 Sum_probs=37.0
Q ss_pred EEEEEeCCCeEEEEEe-ccCCCCccceeeeEE--eeccCCceEEEEEccCCCEEEEeeCCCeEEE
Q 037555 117 LLLSVSRDRQFSVFAI-QRTGTGEIDYQLIAR--QEAHKRIIWSCSWNPFGHEFATGSRDKTVKI 178 (298)
Q Consensus 117 ~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 178 (298)
.++.|+.+|.|.-.-+ ............+.. ......+|..|.++++...|++++.++.+++
T Consensus 431 VlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~~~~~pI~~L~ld~~~~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 431 VMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEETTSEEEEEEEEC------CEEEEEEEEECSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEECCCCeEEEEEEcCCCCccccceEEEEEEeecCCCceeeeEEEcCCCCEEEEEECCEEEEE
Confidence 5778889998763322 211110000111221 2234678999999999999999998886665
No 379
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=35.84 E-value=1.3e+02 Score=25.35 Aligned_cols=73 Identities=12% Similarity=0.110 Sum_probs=41.8
Q ss_pred EEEEEEcC----CC--CEEEEEeCCCeEEEEEeccCCCC-ccceeeeEEee--ccCCceEEEEEccCCCEEEEeeCCCeE
Q 037555 106 VTQIRFSH----DD--NLLLSVSRDRQFSVFAIQRTGTG-EIDYQLIARQE--AHKRIIWSCSWNPFGHEFATGSRDKTV 176 (298)
Q Consensus 106 v~~~~~~~----~~--~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i 176 (298)
.++|+... ++ ..++.|+.+|.|.-.-+...... ......+..+. ....+|..|.++++..+|++++.++.+
T Consensus 406 lT~IaVd~v~~~~~~~tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~ 485 (495)
T 1q47_A 406 FTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVA 485 (495)
T ss_dssp EEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEE
T ss_pred eEEEEEEEEccCCCcEEEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEE
Confidence 45665543 23 35777888998765444321110 00011111222 235789999999999999999988766
Q ss_pred EE
Q 037555 177 KI 178 (298)
Q Consensus 177 ~~ 178 (298)
++
T Consensus 486 ~v 487 (495)
T 1q47_A 486 QL 487 (495)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 380
>4gz8_A Semaphorin-3A; multi-domain, cell-CELL signaling, plexin, glycosilate extracellular, signaling protein; HET: NAG BMA MAN; 3.30A {Mus musculus}
Probab=30.83 E-value=2.2e+02 Score=25.06 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=36.5
Q ss_pred CEEEEeeCCCeEE-EEEccCCc-------ceeeeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEE
Q 037555 165 HEFATGSRDKTVK-IWAVENKS-------SVKQILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIEL 228 (298)
Q Consensus 165 ~~l~~~~~dg~i~-~wd~~~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~v 228 (298)
..++.|+.+|.|+ +.-..... .+.++..+ ....+|..|.+++.. ..|.+++.++.++|
T Consensus 430 tVlFLGT~~G~I~Kvv~~~~~~~~~~~~~~leEi~v~-~~~~pI~~L~ld~~~-----~~LYV~t~~~V~kV 495 (667)
T 4gz8_A 430 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVF-REPTTISAMELSTKQ-----QQLYIGSTAGVAQL 495 (667)
T ss_dssp EEEEEEETTSEEEEEEEEC------CEEEEEEEEECS-SSCCCCCEEEEETTT-----TEEEEEBSSCEEEE
T ss_pred EEEEEECCCCeEEEEEEcCCCCccccceEEEEEEeec-CCCceeeeEEEcCCC-----CEEEEEECCEEEEE
Confidence 4577889999875 33222211 12222222 356789999999987 78888888776654
No 381
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=29.81 E-value=2.7e+02 Score=23.97 Aligned_cols=74 Identities=9% Similarity=0.069 Sum_probs=43.4
Q ss_pred EEEEEEcC----CC--CEEEEEeCCCeEEEEEeccCCCC-ccceeeeEE---eec--------cCCceEEEEEccCCCEE
Q 037555 106 VTQIRFSH----DD--NLLLSVSRDRQFSVFAIQRTGTG-EIDYQLIAR---QEA--------HKRIIWSCSWNPFGHEF 167 (298)
Q Consensus 106 v~~~~~~~----~~--~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~---~~~--------~~~~v~~~~~~~~~~~l 167 (298)
.+.|++.. ++ ..++.|+.+|.|.-.-+...... ......+.. +.. ...+|..+.++++...|
T Consensus 405 lT~IaVd~~~g~~~~ytVlFLGTd~G~l~Kvv~~~~~~~~~~~~~~iEEi~vf~~~~~~~~~~~~~pI~~L~ls~~~~~L 484 (565)
T 3oky_B 405 LTKIAVDNAAGPYQNHTVVFLGSEKGIILKFLARIGSSGFLNGSLFLEEMNVYNPEKCSYDGVEDKRIMGMQLDRASGSL 484 (565)
T ss_dssp EEEEEEEEEETTTTCEEEEEEEETTSEEEEEEECC-----CCCCEEEEEEECCCHHHHCBTTBCCCCCCEEEEEGGGTEE
T ss_pred eEEEEEEEEecCCCceEEEEEECCCCeEEEEEecCCCCccccccEEEEEEEEeccccccccccCCCceEEEEEcCCCCEE
Confidence 46777654 22 36788999999864433221110 000111211 111 14678899999999999
Q ss_pred EEeeCCCeEEEE
Q 037555 168 ATGSRDKTVKIW 179 (298)
Q Consensus 168 ~~~~~dg~i~~w 179 (298)
++++.++.+++-
T Consensus 485 YV~s~~~V~qVP 496 (565)
T 3oky_B 485 YVAFSTCVIKVP 496 (565)
T ss_dssp EEECSSCEEEEE
T ss_pred EEEecCeEEEee
Confidence 999988877763
No 382
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=28.46 E-value=2.2e+02 Score=24.63 Aligned_cols=59 Identities=12% Similarity=0.055 Sum_probs=35.8
Q ss_pred CEEEEeeCCCeEEEEEccCCc---ceeeeeecC--CCCCceEEEEEeeccccCCccEEEEeecCCcEEE
Q 037555 165 HEFATGSRDKTVKIWAVENKS---SVKQILALP--PFNSSVTALSWVGLDRQKNHGFLAVGMESGVIEL 228 (298)
Q Consensus 165 ~~l~~~~~dg~i~~wd~~~~~---~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~v 228 (298)
..++.|+.+|.|+-.-+.... ....+..+. ....+|..|.+++.. ..|..++.++.++|
T Consensus 381 tVlFLGT~~G~l~Kvv~~~~~~~~~~~~ieei~~~~~~~pi~~L~ls~~~-----~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 381 HVLYLTTDRGTIHKVVEPGEQEHSFAFNIMEIQPFRRAAAIQTMSLDAER-----RKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEEETTSCEEEEECCCSSTTCCCEEEEEECCCSSCCCCCEEEEETTT-----TEEEEECSSEEEEE
T ss_pred EEEEEEcCCcEEEEEEecCCCCcceeEEEEEeeccCCCCceeeEEEcCCC-----CEEEEEecceEEEc
Confidence 467788899987644332211 011111221 245688999999876 67888877765554
No 383
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=28.19 E-value=2e+02 Score=21.87 Aligned_cols=165 Identities=9% Similarity=-0.017 Sum_probs=94.5
Q ss_pred CCceEEEEEcC-CCCEEEeEeccCCCCceEEEEEEcCCce------eeeccccccccEEEEEEcCCCCEEEEEeCCCeEE
Q 037555 56 GNELFSLCCDH-QGKLVASSCKAQSTAAAEIWLWEVGSWK------AMGRLQSHSLTVTQIRFSHDDNLLLSVSRDRQFS 128 (298)
Q Consensus 56 ~~~v~~~~~s~-~~~~l~~~~~~~~~~d~~i~vw~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 128 (298)
...|..+.... +...++..+ .+|.++...+.... ....+.. .+.+..+....+...++..+..|.+.
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T-----~~G~iKr~~l~~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~ 140 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLAT-----KKGYVKKIPLAEFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVA 140 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEE-----TTSEEEEEEGGGTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEE
T ss_pred CCEEEEEECCcCCCCEEEEEe-----CCCEEEEEEHHHhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEE
Confidence 45566664421 456777774 48999999876532 1222332 34555555555666888889999998
Q ss_pred EEEeccCCCCcc--ceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEEccCCccee----eeeecCCCCCceEE
Q 037555 129 VFAIQRTGTGEI--DYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWAVENKSSVK----QILALPPFNSSVTA 202 (298)
Q Consensus 129 iwd~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~----~~~~~~~~~~~v~~ 202 (298)
.++...-..... .+.....+.. ...|..+...+++..++..+..|.++...+..-.... -+..+ ...+.+..
T Consensus 141 r~~~~eip~~gR~a~Gv~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~ 218 (276)
T 3no0_A 141 RFSVREVPPSTPGARGVQGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVD 218 (276)
T ss_dssp EEEGGGSCBCCTTCCCEECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEE
T ss_pred EEEhhhCCCcCCCCCCEEEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEE
Confidence 888654322110 1222223332 3556666555566788899999999988875432211 11122 23344554
Q ss_pred EEEeeccccCCccEEEEeecCCcEEE--EEeee
Q 037555 203 LSWVGLDRQKNHGFLAVGMESGVIEL--WSISV 233 (298)
Q Consensus 203 ~~~~~~~~~~~~~~l~~g~~dg~i~v--wd~~~ 233 (298)
+...... ..++..+.+|.+.. ++...
T Consensus 219 ~~~~~~~-----~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 219 LIPIKEE-----VELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp EEEESSE-----EEEEEEETTSCEEEEEEEGGG
T ss_pred EEEeCCC-----CEEEEEcCCCeEEEeeeCHHH
Confidence 4433322 45666677888777 77654
No 384
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=28.08 E-value=2.2e+02 Score=22.30 Aligned_cols=165 Identities=12% Similarity=0.018 Sum_probs=86.5
Q ss_pred CceEEE-EEcC--CCCEEEeEeccCCCCceEEEEEEcCCcee--------eeccccccccEEEEEEcCCCCEEEEEeCCC
Q 037555 57 NELFSL-CCDH--QGKLVASSCKAQSTAAAEIWLWEVGSWKA--------MGRLQSHSLTVTQIRFSHDDNLLLSVSRDR 125 (298)
Q Consensus 57 ~~v~~~-~~s~--~~~~l~~~~~~~~~~d~~i~vw~~~~~~~--------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 125 (298)
..|.++ .... ++.+++..+ ..|.++.-.+..... ...+... +.+..+........++..+.+|
T Consensus 92 e~Iv~~~~~~~~~~~~~ll~~T-----~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l~T~~G 165 (323)
T 1wp5_A 92 EEIIKAIPINDFELNGYFLFVT-----RNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNELFLVTHNG 165 (323)
T ss_dssp CCEEEEEEESCTTSSCEEEEEE-----TTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSEEEEEETTS
T ss_pred CEEEEEEEecccCCCceEEEEe-----CCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCEEEEEeCCC
Confidence 345544 3332 255677673 489999988753222 2223322 4555555555556788888999
Q ss_pred eEEEEEeccCCCCcc--ceeeeEEeeccCCceEEEEEccCCC-EEEEeeCCCeEEEEEccCCc-------ceeeeeecCC
Q 037555 126 QFSVFAIQRTGTGEI--DYQLIARQEAHKRIIWSCSWNPFGH-EFATGSRDKTVKIWAVENKS-------SVKQILALPP 195 (298)
Q Consensus 126 ~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~wd~~~~~-------~~~~~~~~~~ 195 (298)
.+..+....-..... .+.....+. ....|.++...+++. .+++.+..|..+..++..-. -...+..+..
T Consensus 166 ~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~~~ 244 (323)
T 1wp5_A 166 YALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILRELKA 244 (323)
T ss_dssp EEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCCSS
T ss_pred cEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeecCC
Confidence 999888764321110 011222222 234566665444444 78888989998887776421 1111111222
Q ss_pred CCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555 196 FNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 196 ~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 233 (298)
....+..+.....+ ..++..+..|.+.-..+..
T Consensus 245 ~~~~l~~~~~v~~~-----~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 245 NPHRISGFVVAQDS-----DTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp SCCCEEEEEEECTT-----CEEEEEETTSCEEEEEGGG
T ss_pred CCceEEEEEEeCCC-----CeEEEEeCCCeEEEEEhhh
Confidence 22244433322222 3455566677776666544
No 385
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=28.04 E-value=3.2e+02 Score=24.28 Aligned_cols=40 Identities=8% Similarity=0.039 Sum_probs=30.8
Q ss_pred ceEEEE-EcCCCCEEEeEeccCCCCceEEEEEEcCCceeee
Q 037555 58 ELFSLC-CDHQGKLVASSCKAQSTAAAEIWLWEVGSWKAMG 97 (298)
Q Consensus 58 ~v~~~~-~s~~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~ 97 (298)
....+. ++|++++++.+-..++++-..++++|+.+++.+.
T Consensus 130 ~~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~ 170 (711)
T 4hvt_A 130 AYRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVK 170 (711)
T ss_dssp EEEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECT
T ss_pred EEeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCC
Confidence 344555 8999998888766555667799999999988764
No 386
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=27.25 E-value=3.3e+02 Score=24.18 Aligned_cols=163 Identities=12% Similarity=0.027 Sum_probs=0.0
Q ss_pred ccEEEEEEcC-CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeec----cCCceEEEEEcc-CCCEEEEeeCCCe--
Q 037555 104 LTVTQIRFSH-DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEA----HKRIIWSCSWNP-FGHEFATGSRDKT-- 175 (298)
Q Consensus 104 ~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~-~~~~l~~~~~dg~-- 175 (298)
..|..|+++| +...+.++...+.|...+-.-.. +..+..... ....|.+|+++| +.+.++++.....
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~t-----W~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~ 97 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDPSTET-----WIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTND 97 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEETTTTE-----EEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSS
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCCCCCC-----EEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccc
Q ss_pred -----EEEEEccCCcceeeeeecCCCCCc-------eEEEEEeeccccCCccEEEEeecCCcEEEEEeeecccccccCCC
Q 037555 176 -----VKIWAVENKSSVKQILALPPFNSS-------VTALSWVGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPA 243 (298)
Q Consensus 176 -----i~~wd~~~~~~~~~~~~~~~~~~~-------v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 243 (298)
..||...++-.-............ +..++++|..+ ..++.+...|.-.......+
T Consensus 98 ~~~~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~----~~v~~g~~~g~gl~~S~DgG--------- 164 (737)
T 2cn3_A 98 WLPNMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDN----RILYLGTRCGNGLWRSTDYG--------- 164 (737)
T ss_dssp SSCCCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCT----TCEEEECSTTCCEEEESSTT---------
T ss_pred cccCCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCC----CEEEEeeccCCcEEEeCCCC---------
Q ss_pred CCCcceeeeeccCCcc--------------cceEEEEEeecCCCCCCCcce------EEEeeeCCCcEEEe
Q 037555 244 PSTANIIIRFDPFACH--------------VAAVNRMAWKTHEKPKNSRTM------QLASCGADNTVRVF 294 (298)
Q Consensus 244 ~~~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~~~~~~~------~l~s~~~d~~i~iw 294 (298)
.....+..+..+ ...+..+.++|... . .+..+..++.-.||
T Consensus 165 ----~tW~~~~~~~~~~~~~~~p~~~~~~~~~g~~~v~~dp~~~------~~~~~~~~v~~~~~~~~~~v~ 225 (737)
T 2cn3_A 165 ----VTWSKVESFPNPGTYIYDPNFDYTKDIIGVVWVVFDKSSS------TPGNPTKTIYVGVADKNESIY 225 (737)
T ss_dssp ----SSCEECTTCCCCCCCBSCTTSTTTCSBCCEEEEEECGGGS------CTTSCCSCEEEEESCSSCCEE
T ss_pred ----cceecccCCCCCcccccCcccccccCCCCEEEEEcCCCCc------ccCCCCCEEEEEecCCCccEE
No 387
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens}
Probab=25.89 E-value=3.3e+02 Score=23.63 Aligned_cols=61 Identities=8% Similarity=-0.009 Sum_probs=37.5
Q ss_pred EEEEEeCCCeEEEEEeccCCCCccceeeeEEee--ccCCceEEEEEccCCCEEEEeeCCCeEEE
Q 037555 117 LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQE--AHKRIIWSCSWNPFGHEFATGSRDKTVKI 178 (298)
Q Consensus 117 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~ 178 (298)
.+..|+.+|.|.-.-+........ ...+..+. ....+|..+.++++...|++++.++.+++
T Consensus 382 VlFLGT~~G~l~Kvv~~~~~~~~~-~~~ieei~~~~~~~pi~~L~ls~~~~~LyV~s~~~V~qV 444 (590)
T 3nvq_A 382 VLYLTTDRGTIHKVVEPGEQEHSF-AFNIMEIQPFRRAAAIQTMSLDAERRKLYVSSQWEVSQV 444 (590)
T ss_dssp EEEEEETTSCEEEEECCCSSTTCC-CEEEEEECCCSSCCCCCEEEEETTTTEEEEECSSEEEEE
T ss_pred EEEEEcCCcEEEEEEecCCCCcce-eEEEEEeeccCCCCceeeEEEcCCCCEEEEEecceEEEc
Confidence 577788899887544332111100 11111221 24568899999999999999988776665
No 388
>3ol2_B Plexin-B1; beta-propeller, signalling, extacellular, signaling protein; HET: NAG BMA; 2.99A {Homo sapiens}
Probab=25.56 E-value=2.2e+02 Score=24.27 Aligned_cols=71 Identities=8% Similarity=0.097 Sum_probs=42.5
Q ss_pred EEEEEEcC-C-CCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCce-EEEEEccCCCEEEEeeCCCeEEEE
Q 037555 106 VTQIRFSH-D-DNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRII-WSCSWNPFGHEFATGSRDKTVKIW 179 (298)
Q Consensus 106 v~~~~~~~-~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~~w 179 (298)
.+.|+... + ...++.|+.+|.|.-.-+........ ...+. + ....+| ..+.++++...|++++..+.+++-
T Consensus 389 lT~IaVd~~~g~tV~FlGT~~G~l~Kv~~~~~~~~~~-~ee~~-v-~~~~pi~~~l~l~~~~~~Lyv~s~~~V~~vp 462 (528)
T 3ol2_B 389 LTAVAVTMEDGHTIAFLGDSQGQLHRVYLGPGSDGHP-YSTQS-I-QQGSAVSRDLTFDGTFEHLYVMTQSTLLKVP 462 (528)
T ss_dssp EEEEEEEEETTEEEEEEEETTSEEEEEECSSSCCSCC-SEEEE-S-STTSCCCSCCEECTTSSEEEEECSSCEEEEE
T ss_pred eEEEEEEeecCeEEEEEECCCCeEEEEEEcCCCCeeE-Eeeec-c-CCCCcceeeEEEecCCCEEEEEeCCEEEEEE
Confidence 45555443 2 23566788899987555432211111 12222 2 345677 489999999999999988876653
No 389
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=25.05 E-value=2.4e+02 Score=21.79 Aligned_cols=202 Identities=10% Similarity=0.039 Sum_probs=101.2
Q ss_pred CCCEEEeEeccCCCCceEEEEEEcCCceeee---------ccccccccEEEEEEcCCCCEEEEEeCCCeEEEEEeccCCC
Q 037555 67 QGKLVASSCKAQSTAAAEIWLWEVGSWKAMG---------RLQSHSLTVTQIRFSHDDNLLLSVSRDRQFSVFAIQRTGT 137 (298)
Q Consensus 67 ~~~~l~~~~~~~~~~d~~i~vw~~~~~~~~~---------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 137 (298)
+...+++.+ .+|.|+--.+.+.+... .+.. ...+..+........++..+..|.+.-+....-..
T Consensus 2 ~e~~~v~~T-----~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke-~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~ 75 (307)
T 1zi0_A 2 QEDVVVTLS-----HQGYVKYQPLSEYEAQRRGGKGKSAARIKE-EDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPE 75 (307)
T ss_dssp CCEEEEEEE-----TTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC
T ss_pred CCcEEEEEe-----CCCEEEEeeHHHhhhhccCCCCceeeeeCC-CCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcC
Confidence 445566663 48888877765433211 1222 23344444444556777777888877666543211
Q ss_pred Ccc--ceeeeE---EeeccCCceEEEEEc---cCCCEEEEeeCCCeEEEEEccCCccee----eeeecCCCCCceEEEEE
Q 037555 138 GEI--DYQLIA---RQEAHKRIIWSCSWN---PFGHEFATGSRDKTVKIWAVENKSSVK----QILALPPFNSSVTALSW 205 (298)
Q Consensus 138 ~~~--~~~~~~---~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~~wd~~~~~~~~----~~~~~~~~~~~v~~~~~ 205 (298)
... .+.++. .+. ....|..+..- .++.+++..+..|.++.-.+....... ....+... ..+..+..
T Consensus 76 ~~~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~ 153 (307)
T 1zi0_A 76 ATRGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDL 153 (307)
T ss_dssp CCSSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEE
T ss_pred CCCCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEE
Confidence 100 122111 122 23445555332 345678999999999998775322211 11123323 45555555
Q ss_pred eeccccCCccEEEEeecCCcEEEEEeeecccccccCCCCCCcceeeeeccCCcccceEEEEEeecCCCCCCCcceEEEee
Q 037555 206 VGLDRQKNHGFLAVGMESGVIELWSISVNRTNDVSTPAPSTANIIIRFDPFACHVAAVNRMAWKTHEKPKNSRTMQLASC 285 (298)
Q Consensus 206 ~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~ 285 (298)
.... ..++..+.+|.+..++...-+...... .-...+. +. ....|.++....++ ..|++.
T Consensus 154 ~~~~-----~~i~l~T~~G~~irf~~~~v~~~gr~a------~Gv~~i~-L~-~~d~Vv~~~~~~~~-------~~ll~~ 213 (307)
T 1zi0_A 154 TSGE-----DEVMLFSAEGKVVRFKESSVRAMGCNT------TGVRGIR-LG-EGDKVVSLIVPRGD-------GAILTA 213 (307)
T ss_dssp ECTT-----CEEEEEETTSEEEEEEGGGSCBCCTTC------CCEECCC-CC-TTCCEEEEECCCSS-------CEEEEE
T ss_pred eCCC-----CEEEEECCCCcEEEEEHHHcCccCCCC------CCeEeEE-eC-CCCEEEEEEEecCC-------CEEEEE
Confidence 4433 457777788988877765432111100 1111111 22 23456666544444 467777
Q ss_pred eCCCcEEEeEe
Q 037555 286 GADNTVRVFQV 296 (298)
Q Consensus 286 ~~d~~i~iw~~ 296 (298)
+..|.++-.++
T Consensus 214 T~~G~~Kr~~~ 224 (307)
T 1zi0_A 214 TQNGYGKRTAV 224 (307)
T ss_dssp ETTSEEEEECG
T ss_pred EcCCceEEEEH
Confidence 88888776654
No 390
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=25.03 E-value=2.4e+02 Score=21.83 Aligned_cols=124 Identities=14% Similarity=0.063 Sum_probs=72.5
Q ss_pred ccEEEEEEcC---CCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEEE
Q 037555 104 LTVTQIRFSH---DDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIWA 180 (298)
Q Consensus 104 ~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~wd 180 (298)
..|..+...+ +...++..+..|.++...+..-......+.....+.. .+.+..+.....+..++..+.+|.+..+.
T Consensus 100 e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~ 178 (312)
T 1suu_A 100 EEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFN 178 (312)
T ss_dssp CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEE
T ss_pred CEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEE
Confidence 3444443332 4567888999999999887653221111222233343 45565555555556788889999999888
Q ss_pred ccCCccee------eeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeeec
Q 037555 181 VENKSSVK------QILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISVN 234 (298)
Q Consensus 181 ~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~ 234 (298)
...-.... ....+. ....+.++.....+ ..+++.+..|..+...+..-
T Consensus 179 ~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~-----~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 179 SRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKEN-----PYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp GGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTC-----SEEEEEETTSEEEEEEGGGS
T ss_pred HHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCC-----CeEEEEECCCceEEEEHHHh
Confidence 76421111 111233 23455565554333 46778888999988887653
No 391
>3oky_B Putative uncharacterized protein; transmembrane, ligand, SEMA-domain, cell-CELL signalling, SI protein; HET: NAG; 2.19A {Mus musculus} PDB: 3okw_A* 3afc_A* 3al8_A*
Probab=24.71 E-value=3.4e+02 Score=23.39 Aligned_cols=71 Identities=11% Similarity=0.100 Sum_probs=43.2
Q ss_pred ceEEEEEcc----C--CCEEEEeeCCCeEEEEEccCC--------cceeeeeecCC--------CCCceEEEEEeecccc
Q 037555 154 IIWSCSWNP----F--GHEFATGSRDKTVKIWAVENK--------SSVKQILALPP--------FNSSVTALSWVGLDRQ 211 (298)
Q Consensus 154 ~v~~~~~~~----~--~~~l~~~~~dg~i~~wd~~~~--------~~~~~~~~~~~--------~~~~v~~~~~~~~~~~ 211 (298)
..+.|++.. + ...++.|+.+|.|+-.-+... ..+.++..+.. ...+|..|.+++..
T Consensus 404 ~lT~IaVd~~~g~~~~ytVlFLGTd~G~l~Kvv~~~~~~~~~~~~~~iEEi~vf~~~~~~~~~~~~~pI~~L~ls~~~-- 481 (565)
T 3oky_B 404 RLTKIAVDNAAGPYQNHTVVFLGSEKGIILKFLARIGSSGFLNGSLFLEEMNVYNPEKCSYDGVEDKRIMGMQLDRAS-- 481 (565)
T ss_dssp CEEEEEEEEEETTTTCEEEEEEEETTSEEEEEEECC-----CCCCEEEEEEECCCHHHHCBTTBCCCCCCEEEEEGGG--
T ss_pred ceEEEEEEEEecCCCceEEEEEECCCCeEEEEEecCCCCccccccEEEEEEEEeccccccccccCCCceEEEEEcCCC--
Confidence 357777764 1 246788999999753322211 11112222221 24678899999887
Q ss_pred CCccEEEEeecCCcEEEE
Q 037555 212 KNHGFLAVGMESGVIELW 229 (298)
Q Consensus 212 ~~~~~l~~g~~dg~i~vw 229 (298)
..|.+++.++.++|-
T Consensus 482 ---~~LYV~s~~~V~qVP 496 (565)
T 3oky_B 482 ---GSLYVAFSTCVIKVP 496 (565)
T ss_dssp ---TEEEEECSSCEEEEE
T ss_pred ---CEEEEEecCeEEEee
Confidence 688888888877664
No 392
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=21.67 E-value=2.8e+02 Score=21.38 Aligned_cols=124 Identities=9% Similarity=-0.012 Sum_probs=71.2
Q ss_pred cccEEEEEEc---CCCCEEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCCCEEEEeeCCCeEEEE
Q 037555 103 SLTVTQIRFS---HDDNLLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFGHEFATGSRDKTVKIW 179 (298)
Q Consensus 103 ~~~v~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~w 179 (298)
...|..+..- .++.+++..+.+|.++-..+..-............+... +.+..+........++..+.+|.+..+
T Consensus 94 ~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~irf 172 (307)
T 1zi0_A 94 DERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKVVRF 172 (307)
T ss_dssp TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcEEEE
Confidence 3445555432 345678999999999999875422111112222233333 455555444455677888889998888
Q ss_pred EccCCccee------eeeecCCCCCceEEEEEeeccccCCccEEEEeecCCcEEEEEeee
Q 037555 180 AVENKSSVK------QILALPPFNSSVTALSWVGLDRQKNHGFLAVGMESGVIELWSISV 233 (298)
Q Consensus 180 d~~~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~g~~dg~i~vwd~~~ 233 (298)
....-.... ....+. ....|.++.....+ ..+++.+..|.++-.++..
T Consensus 173 ~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~-----~~ll~~T~~G~~Kr~~~~e 226 (307)
T 1zi0_A 173 KESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGD-----GAILTATQNGYGKRTAVAE 226 (307)
T ss_dssp EGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSS-----CEEEEEETTSEEEEECGGG
T ss_pred EHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCC-----CEEEEEEcCCceEEEEHHH
Confidence 775422211 011232 23456666554433 4688888899988877654
No 393
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Probab=21.09 E-value=4.2e+02 Score=23.33 Aligned_cols=59 Identities=5% Similarity=-0.116 Sum_probs=36.5
Q ss_pred EEEEEeCCCeEEEEEeccCCCCccceeeeEEeeccCCceEEEEEccCC--CEEEEeeCCCeEEE
Q 037555 117 LLLSVSRDRQFSVFAIQRTGTGEIDYQLIARQEAHKRIIWSCSWNPFG--HEFATGSRDKTVKI 178 (298)
Q Consensus 117 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~~ 178 (298)
.++.|+.+|.|.-.-..... ......+.. .....+|..|.++++. ..|++++..+.+++
T Consensus 417 V~flGT~~G~l~Kvv~~~~~--~~~~ee~~~-~~~~~pI~~l~l~~~~~~~~Lyv~s~~~V~~v 477 (663)
T 1olz_A 417 VMFVSTDRGALHKAISLEHA--VHIIEETQL-FQDFEPVQTLLLSSKKGNRFVYAGSNSGVVQA 477 (663)
T ss_dssp EEEEEETTSEEEEEEECSSS--EEEEEEEEC-CTTCCCCCEEEECCSSSSCEEEEECSSCEEEE
T ss_pred EEEEEcCCcEEEEEEecCCC--ceEEEEecc-cCCCCcceeeEeccCCCccEEEEEEcCeEEEE
Confidence 67788899987644222211 000111111 2245688899999987 89999988776665
Done!