BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037558
(518 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 175/556 (31%), Positives = 252/556 (45%), Gaps = 108/556 (19%)
Query: 34 EEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCAWYGISCND--------AGRVI 85
E L+ +K L +N LP W SS +PC + G++C D + + +
Sbjct: 12 REIHQLISFKDVLPDKN--LLPDW-------SSNKNPCTFDGVTCRDDKVTSIDLSSKPL 62
Query: 86 NIS------------------LRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFG--TIPP 125
N+ L N+ ++G++ GF S+ L LDL+ + L G T
Sbjct: 63 NVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSA--SLTSLDLSRNSLSGPVTTLT 120
Query: 126 EVGLLSHLKFLFIDTNKLDGSIPPEVG---QLSSMEVFFLCSNYLNGS------VPPSLG 176
+G S LKFL + +N LD P +V +L+S+EV L +N ++G+ + G
Sbjct: 121 SLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178
Query: 177 NLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYG 236
L H++ I N SG + D+ ++ LD+SSN FS IP F G+ S L+ L + G
Sbjct: 179 ELKHLA---ISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISG 232
Query: 237 NSLSSPILSSLGK----------------------FKSLIDLQLNENQFTGYIPRSF-GN 273
N LS ++ KSL L L EN+FTG IP G
Sbjct: 233 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGA 292
Query: 274 LTSLSTLRLSKNELFGSIP-------------------------DEIGKMRSLSVLDLNE 308
+L+ L LS N +G++P D + KMR L VLDL+
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352
Query: 309 NQFKGVLPPSISNLT-NLKELALLYNHLSGSIPPSLGNL---ILRELLLSGNHFAGYLPY 364
N+F G LP S++NL+ +L L L N+ SG I P+L L+EL L N F G +P
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
Query: 365 NICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFID 424
+ L +S N+ GTIP+S+ + + L + L N L G I + L L +
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472
Query: 425 LSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPK 484
L N+ GEI S C L+ +++S N +TG IP+ IG L L LS N G IP
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
Query: 485 ELGKLNSLTKLILRGN 500
ELG SL L L N
Sbjct: 533 ELGDCRSLIWLDLNTN 548
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 150/497 (30%), Positives = 220/497 (44%), Gaps = 79/497 (15%)
Query: 80 DAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFID 139
D + ++ + LSG + S+ L L+++ + G IPP L L++L +
Sbjct: 221 DCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLA 277
Query: 140 TNKLDGSIPPEV-GQLSSMEVFFLCSNYLNGSVPPSLG---------------------- 176
NK G IP + G ++ L N+ G+VPP G
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337
Query: 177 ---NLSHISLLFIYDNLFSGFIPSDIGN-SKSIFNLDLSSNQFSGPI-PLFFGNLSN-LK 230
+ + +L + N FSG +P + N S S+ LDLSSN FSGPI P N N L+
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397
Query: 231 SLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGS 290
LYL N + I +L L+ L L+ N +G IP S G+L+ L L+L N L G
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457
Query: 291 IPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLI-LR 349
IP E+ +++L L L+ N G +P +SN TNL ++L N L+G IP +G L L
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517
Query: 350 ELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTS-------------------- 389
L LS N F+G +P + +L ++ N F GTIP +
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 577
Query: 390 VRNCTSLIRVHLNGN---------------------NLT-----GNISEALAIYPNLTFI 423
++N H GN N+T G+ S ++ F+
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637
Query: 424 DLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIP 483
D+S N G I G P L LN+ N+I+G IP E+G+ L LDLS N + G IP
Sbjct: 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 697
Query: 484 KELGKLNSLTKLILRGN 500
+ + L LT++ L N
Sbjct: 698 QAMSALTMLTEIDLSNN 714
Score = 129 bits (324), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 114/390 (29%), Positives = 190/390 (48%), Gaps = 11/390 (2%)
Query: 109 LAYLDLTGSGLFGTIPPEVGLLS-HLKFLFIDTNKLDGSIPPEVGQ--LSSMEVFFLCSN 165
L LDL+ + G +P + LS L L + +N G I P + Q ++++ +L +N
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Query: 166 YLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGN 225
G +PP+L N S + L + N SG IPS +G+ + +L L N G IP
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 226 LSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKN 285
+ L++L L N L+ I S L +L + L+ N+ TG IP+ G L +L+ L+LS N
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
Query: 286 ELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGN 345
G+IP E+G RSL LDLN N F G +P ++ + + N ++G + N
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG----KIAANFIAGKRYVYIKN 580
Query: 346 L-ILRELLLSGN--HFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLN 402
+ +E +GN F G + + ++ + G + N S++ + ++
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640
Query: 403 GNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREI 462
N L+G I + + P L ++L N+ G I G L+ L++S N + G IP+ +
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700
Query: 463 GNSSQLQALDLSLNHIVGEIPKELGKLNSL 492
+ L +DLS N++ G IP E+G+ +
Sbjct: 701 SALTMLTEIDLSNNNLSGPIP-EMGQFETF 729
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 175/556 (31%), Positives = 252/556 (45%), Gaps = 108/556 (19%)
Query: 34 EEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCAWYGISCND--------AGRVI 85
E L+ +K L +N LP W SS +PC + G++C D + + +
Sbjct: 9 REIHQLISFKDVLPDKN--LLPDW-------SSNKNPCTFDGVTCRDDKVTSIDLSSKPL 59
Query: 86 NIS------------------LRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFG--TIPP 125
N+ L N+ ++G++ GF S+ L LDL+ + L G T
Sbjct: 60 NVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSA--SLTSLDLSRNSLSGPVTTLT 117
Query: 126 EVGLLSHLKFLFIDTNKLDGSIPPEVG---QLSSMEVFFLCSNYLNGS------VPPSLG 176
+G S LKFL + +N LD P +V +L+S+EV L +N ++G+ + G
Sbjct: 118 SLGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 175
Query: 177 NLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYG 236
L H++ I N SG + D+ ++ LD+SSN FS IP F G+ S L+ L + G
Sbjct: 176 ELKHLA---ISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISG 229
Query: 237 NSLSSPILSSLGK----------------------FKSLIDLQLNENQFTGYIPRSF-GN 273
N LS ++ KSL L L EN+FTG IP G
Sbjct: 230 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGA 289
Query: 274 LTSLSTLRLSKNELFGSIP-------------------------DEIGKMRSLSVLDLNE 308
+L+ L LS N +G++P D + KMR L VLDL+
Sbjct: 290 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 349
Query: 309 NQFKGVLPPSISNLT-NLKELALLYNHLSGSIPPSLGNL---ILRELLLSGNHFAGYLPY 364
N+F G LP S++NL+ +L L L N+ SG I P+L L+EL L N F G +P
Sbjct: 350 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 409
Query: 365 NICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFID 424
+ L +S N+ GTIP+S+ + + L + L N L G I + L L +
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 469
Query: 425 LSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPK 484
L N+ GEI S C L+ +++S N +TG IP+ IG L L LS N G IP
Sbjct: 470 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529
Query: 485 ELGKLNSLTKLILRGN 500
ELG SL L L N
Sbjct: 530 ELGDCRSLIWLDLNTN 545
Score = 155 bits (392), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 150/497 (30%), Positives = 220/497 (44%), Gaps = 79/497 (15%)
Query: 80 DAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFID 139
D + ++ + LSG + S+ L L+++ + G IPP L L++L +
Sbjct: 218 DCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLA 274
Query: 140 TNKLDGSIPPEV-GQLSSMEVFFLCSNYLNGSVPPSLG---------------------- 176
NK G IP + G ++ L N+ G+VPP G
Sbjct: 275 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 334
Query: 177 ---NLSHISLLFIYDNLFSGFIPSDIGN-SKSIFNLDLSSNQFSGPI-PLFFGNLSN-LK 230
+ + +L + N FSG +P + N S S+ LDLSSN FSGPI P N N L+
Sbjct: 335 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 394
Query: 231 SLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGS 290
LYL N + I +L L+ L L+ N +G IP S G+L+ L L+L N L G
Sbjct: 395 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 454
Query: 291 IPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLI-LR 349
IP E+ +++L L L+ N G +P +SN TNL ++L N L+G IP +G L L
Sbjct: 455 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 514
Query: 350 ELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTS-------------------- 389
L LS N F+G +P + +L ++ N F GTIP +
Sbjct: 515 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 574
Query: 390 VRNCTSLIRVHLNGN---------------------NLT-----GNISEALAIYPNLTFI 423
++N H GN N+T G+ S ++ F+
Sbjct: 575 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 634
Query: 424 DLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIP 483
D+S N G I G P L LN+ N+I+G IP E+G+ L LDLS N + G IP
Sbjct: 635 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP 694
Query: 484 KELGKLNSLTKLILRGN 500
+ + L LT++ L N
Sbjct: 695 QAMSALTMLTEIDLSNN 711
Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 114/390 (29%), Positives = 190/390 (48%), Gaps = 11/390 (2%)
Query: 109 LAYLDLTGSGLFGTIPPEVGLLS-HLKFLFIDTNKLDGSIPPEVGQ--LSSMEVFFLCSN 165
L LDL+ + G +P + LS L L + +N G I P + Q ++++ +L +N
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 401
Query: 166 YLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGN 225
G +PP+L N S + L + N SG IPS +G+ + +L L N G IP
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 461
Query: 226 LSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKN 285
+ L++L L N L+ I S L +L + L+ N+ TG IP+ G L +L+ L+LS N
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 521
Query: 286 ELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGN 345
G+IP E+G RSL LDLN N F G +P ++ + + N ++G + N
Sbjct: 522 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG----KIAANFIAGKRYVYIKN 577
Query: 346 L-ILRELLLSGN--HFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLN 402
+ +E +GN F G + + ++ + G + N S++ + ++
Sbjct: 578 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 637
Query: 403 GNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREI 462
N L+G I + + P L ++L N+ G I G L+ L++S N + G IP+ +
Sbjct: 638 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 697
Query: 463 GNSSQLQALDLSLNHIVGEIPKELGKLNSL 492
+ L +DLS N++ G IP E+G+ +
Sbjct: 698 SALTMLTEIDLSNNNLSGPIP-EMGQFETF 726
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 113/236 (47%), Gaps = 9/236 (3%)
Query: 242 PILSSLGKFKSLIDLQLNE-NQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRS 300
PI SSL L L + N G IP + LT L L ++ + G+IPD + ++++
Sbjct: 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 301 LSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNL--ILRELLLSGNHF 358
L LD + N G LPPSIS+L NL + N +SG+IP S G+ + + +S N
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 359 AGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYP 418
G +P L +S N +G + + ++HL N+L ++ + + +
Sbjct: 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSK 244
Query: 419 NLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLS 474
NL +DL N YG + + L +LNVS NN+ G IP+ LQ D+S
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ----GGNLQRFDVS 296
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 142/333 (42%), Gaps = 79/333 (23%)
Query: 34 EEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCAWYGISCNDAGRVINISLRNTG 93
++ LL+ K L N + L SW TT+ ++ W G+ C+ +
Sbjct: 6 QDKQALLQIKKDLG--NPTTLSSWL-PTTDCCNR----TWLGVLCDTDTQTY-------- 50
Query: 94 LSGTLHGFSFSSFPRLAYLDLTGSGLFGT--IPPEVGLLSHLKFLFIDTNKLDGSIPPEV 151
R+ LDL+G L IP + L +L FL+I G I
Sbjct: 51 --------------RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI------GGI---- 86
Query: 152 GQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLS 211
N L G +PP++ L+ + L+I SG IP + K++ LD S
Sbjct: 87 -------------NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133
Query: 212 SNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLI-DLQLNENQFTGYIPRS 270
N SG +P +L NL + GN +S I S G F L + ++ N+ TG IP +
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193
Query: 271 FGNLTSLSTLRLSKNELFG--------------------SIPDEIGKM---RSLSVLDLN 307
F NL +L+ + LS+N L G S+ ++GK+ ++L+ LDL
Sbjct: 194 FANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLR 252
Query: 308 ENQFKGVLPPSISNLTNLKELALLYNHLSGSIP 340
N+ G LP ++ L L L + +N+L G IP
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 410 ISEALAIYPNLTFIDLSR-NNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQL 468
I +LA P L F+ + NN G I K +L L ++ N++G IP + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 469 QALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
LD S N + G +P + L +L + GN+
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Query: 222 FFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLR 281
F L NL++L++ N L + + + +L +L+L+ NQ PR F +LT L+ L
Sbjct: 80 IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139
Query: 282 LSKNELFGSIPDEI-GKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLS 336
L NEL S+P + K+ SL L L NQ K V + LT LK L L N L
Sbjct: 140 LGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 67/143 (46%), Gaps = 4/143 (2%)
Query: 195 IPSDI-GNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSL 253
IPS+I ++K LDL SN+ S F L+ L+ LYL N L + + K+L
Sbjct: 31 IPSNIPADTKK---LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87
Query: 254 IDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKG 313
L + +N+ F L +L+ LRL +N+L P + L+ L L N+ +
Sbjct: 88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS 147
Query: 314 VLPPSISNLTNLKELALLYNHLS 336
+ LT+LKEL L N L
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQLK 170
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 74/188 (39%), Gaps = 8/188 (4%)
Query: 147 IPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIF 206
IP + +L L SN L+ + L+ + LL++ DN K++
Sbjct: 35 IPADTKKLD------LQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE 88
Query: 207 NLDLSSNQFSGPIPL-FFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTG 265
L ++ N+ +P+ F L NL L L N L S L L L N+
Sbjct: 89 TLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS 147
Query: 266 YIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNL 325
F LTSL LRL N+L K+ L L L+ NQ K V + +L L
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207
Query: 326 KELALLYN 333
K L L N
Sbjct: 208 KMLQLQEN 215
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 2/175 (1%)
Query: 112 LDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEV-GQLSSMEVFFLCSNYLNGS 170
LDL + L L+ L+ L+++ NKL ++P + +L ++E ++ N L
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 171 VPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLK 230
L +++ L + N P + + L L N+ F L++LK
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160
Query: 231 SLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKN 285
L LY N L + K L L+L+ NQ +F +L L L+L +N
Sbjct: 161 ELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 100/231 (43%), Gaps = 3/231 (1%)
Query: 81 AGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEV-GLLSHLKFLFID 139
A R + I ++ + + +F+ L LDL+ + ++ P L L L +D
Sbjct: 54 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113
Query: 140 TNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDI 199
L P L++++ +L N L + +L +++ LF++ N S
Sbjct: 114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173
Query: 200 GNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLN 259
S+ L L N+ + P F +L L +LYL+ N+LS+ +L ++L L+LN
Sbjct: 174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233
Query: 260 ENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQ 310
+N + R+ L R S +E+ S+P + R L L N+ Q
Sbjct: 234 DNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLPQRLAG-RDLKRLAANDLQ 282
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 93/214 (43%), Gaps = 10/214 (4%)
Query: 230 KSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFG 289
+ ++L+GN +S +S ++L L L+ N +F L L L LS N
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 290 SI-PDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPS----LG 344
S+ P + L L L+ + + P L L+ L L N L ++P LG
Sbjct: 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLG 153
Query: 345 NLILRELLLSGNHFAGYLPYNICQG-GALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNG 403
NL L L GN + +P +G +L+ + +N P + R+ L+ ++L
Sbjct: 154 NLT--HLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210
Query: 404 NNLTGNISEALAIYPNLTFIDLSRNNFYGEISSN 437
NNL+ +EALA L ++ L+ N + + +
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 80/205 (39%), Gaps = 1/205 (0%)
Query: 127 VGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFI 186
VG+ + + +F+ N++ ++ + +L SN L + L+ + L +
Sbjct: 28 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87
Query: 187 YDNL-FSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILS 245
DN P+ + L L P F L+ L+ LYL N+L +
Sbjct: 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 147
Query: 246 SLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLD 305
+ +L L L+ N+ + R+F L SL L L +N + P + L L
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207
Query: 306 LNENQFKGVLPPSISNLTNLKELAL 330
L N + +++ L L+ L L
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRL 232
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 100/231 (43%), Gaps = 3/231 (1%)
Query: 81 AGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEV-GLLSHLKFLFID 139
A R + I ++ + + +F+ L LDL+ + ++ P L L L +D
Sbjct: 53 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 112
Query: 140 TNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDI 199
L P L++++ +L N L + +L +++ LF++ N S
Sbjct: 113 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 172
Query: 200 GNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLN 259
S+ L L N+ + P F +L L +LYL+ N+LS+ +L ++L L+LN
Sbjct: 173 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 232
Query: 260 ENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQ 310
+N + R+ L R S +E+ S+P + R L L N+ Q
Sbjct: 233 DNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLPQRLAG-RDLKRLAANDLQ 281
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 93/214 (43%), Gaps = 10/214 (4%)
Query: 230 KSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFG 289
+ ++L+GN +S +S ++L L L+ N +F L L L LS N
Sbjct: 34 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 290 SI-PDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPS----LG 344
S+ P + L L L+ + + P L L+ L L N L ++P LG
Sbjct: 94 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLG 152
Query: 345 NLILRELLLSGNHFAGYLPYNICQG-GALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNG 403
NL L L GN + +P +G +L+ + +N P + R+ L+ ++L
Sbjct: 153 NLT--HLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 209
Query: 404 NNLTGNISEALAIYPNLTFIDLSRNNFYGEISSN 437
NNL+ +EALA L ++ L+ N + + +
Sbjct: 210 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 243
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 80/205 (39%), Gaps = 1/205 (0%)
Query: 127 VGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFI 186
VG+ + + +F+ N++ ++ + +L SN L + L+ + L +
Sbjct: 27 VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 86
Query: 187 YDNL-FSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILS 245
DN P+ + L L P F L+ L+ LYL N+L +
Sbjct: 87 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD 146
Query: 246 SLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLD 305
+ +L L L+ N+ + R+F L SL L L +N + P + L L
Sbjct: 147 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 206
Query: 306 LNENQFKGVLPPSISNLTNLKELAL 330
L N + +++ L L+ L L
Sbjct: 207 LFANNLSALPTEALAPLRALQYLRL 231
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 101/240 (42%), Gaps = 14/240 (5%)
Query: 195 IPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGN----SLSSPILSSLGKF 250
+PS + + L LS N F + N +L LY+ GN L L LG
Sbjct: 290 LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNL 349
Query: 251 KSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQ 310
++L DL N+ + + NL+ L TL LS NE G + L +LDL +
Sbjct: 350 QTL-DLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 311 FKGVLPPS-ISNLTNLKELALLYNHLSGSIPPSLGNL-ILRELLLSGNHFAG--YLPYNI 366
P S NL L+ L L Y L S L L +LR L L GNHF N+
Sbjct: 409 LHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNL 468
Query: 367 CQG-GALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALA----IYPNLT 421
Q G+LE+ +S + + + V L+ N+LT + ++L+ IY NL
Sbjct: 469 LQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGIYLNLA 528
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 111/447 (24%), Positives = 185/447 (41%), Gaps = 75/447 (16%)
Query: 97 TLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSS 156
T+H +FS L +LDLT + ++ DT + + V L+
Sbjct: 44 TIHNRTFSRLMNLTFLDLTRC--------------QINWIHEDTFQSHHQLSTLV--LTG 87
Query: 157 MEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSG--FIPSDIGNSKSIFNLDLSSNQ 214
+ F+ LNG P SL +L F+ S FIP + N +++ +L L SN
Sbjct: 88 NPLIFMAETSLNG--PKSLKHL------FLIQTGISNLEFIP--VHNLENLESLYLGSNH 137
Query: 215 FSG-PIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNEN----------QF 263
S P F NLK L N++ + + I+L LN N F
Sbjct: 138 ISSIKFPKDFP-ARNLKVLDFQNNAIHYISREDMRSLEQAINLSLNFNGNNVKGIELGAF 196
Query: 264 TGYIPRS--FGNLTSLST----LRLSKNE-----LFGSIPDE------IGKMRSLSV--L 304
I +S FG +LS L+ S + F I DE + + +SV L
Sbjct: 197 DSTIFQSLNFGGTPNLSVIFNGLQNSTTQSLWLGTFEDIDDEDISSAMLKGLCEMSVESL 256
Query: 305 DLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNL-ILRELLLSGNHFAGYLP 363
+L E++F + + T L+EL L HL G +P + L +L++L+LS NHF
Sbjct: 257 NLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFD---- 311
Query: 364 YNICQGGALEIFTVSENHFQGTIPT------SVRNCTSLIRVHLNGNNLTGNISEALAI- 416
+CQ A +++ + +G + + +L + L+ N++ + +L +
Sbjct: 312 -QLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLK 370
Query: 417 -YPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPRE-IGNSSQLQALDLS 474
+L ++LS N G S + +CP+L+ L+++ + P+ N LQ L+L+
Sbjct: 371 NLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLT 430
Query: 475 LNHIVGEIPKELGKLNSLTKLILRGNQ 501
+ L L L L L+GN
Sbjct: 431 YCFLDTSNQHLLAGLPVLRHLNLKGNH 457
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 10/109 (9%)
Query: 208 LDLSSNQFSGPIPL-FFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGY 266
L L++NQ + +PL F +L+ L LYL GN L S + L +L+LN NQ
Sbjct: 88 LGLANNQLAS-LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146
Query: 267 IPRSFGNLTSLSTLRLSKNELFGSIP----DEIGKMRSLSVLDLNENQF 311
+F LT+L TL LS N+L S+P D +GK++++++ NQF
Sbjct: 147 PAGAFDKLTNLQTLSLSTNQL-QSVPHGAFDRLGKLQTITLFG---NQF 191
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 55/136 (40%)
Query: 208 LDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYI 267
L+L NQ F +L+ L +L L N L+S L L L L NQ
Sbjct: 64 LNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP 123
Query: 268 PRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKE 327
F LT L LRL+ N+L K+ +L L L+ NQ + V + L L+
Sbjct: 124 SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQT 183
Query: 328 LALLYNHLSGSIPPSL 343
+ L N S +L
Sbjct: 184 ITLFGNQFDCSRCETL 199
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 75/174 (43%), Gaps = 12/174 (6%)
Query: 188 DNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSL 247
D++ SG IP+D LDL S + F L+ L L L N L +
Sbjct: 27 DSVPSG-IPADTEK------LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF 79
Query: 248 GKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDL 306
L L L NQ F +LT L L L N+L S+P + ++ L L L
Sbjct: 80 DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRL 138
Query: 307 NENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLI--LRELLLSGNHF 358
N NQ + + + LTNL+ L+L N L S+P + + L+ + L GN F
Sbjct: 139 NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 80/200 (40%), Gaps = 28/200 (14%)
Query: 75 GISCNDAGRVINISLRNTGLSGTLHGFSFSSFP-----RLAYLDLTGSGLFGTIPPEVGL 129
G +CN+ + ++ G S S P LDL +GL
Sbjct: 9 GCTCNEGKKEVDC-----------QGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRG 57
Query: 130 LSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDN 189
L+ L +L +D N+L L+ + L +N L S+P LG H++ L D
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLP--LGVFDHLTQL---DK 111
Query: 190 LFSG-----FIPSDIGNS-KSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPI 243
L+ G +PS + + + L L++NQ F L+NL++L L N L S
Sbjct: 112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171
Query: 244 LSSLGKFKSLIDLQLNENQF 263
+ + L + L NQF
Sbjct: 172 HGAFDRLGKLQTITLFGNQF 191
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 10/109 (9%)
Query: 208 LDLSSNQFSGPIPL-FFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGY 266
L L++NQ + +PL F +L+ L LYL GN L S + L +L+LN NQ
Sbjct: 88 LGLANNQLAS-LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146
Query: 267 IPRSFGNLTSLSTLRLSKNELFGSIP----DEIGKMRSLSVLDLNENQF 311
+F LT+L TL LS N+L S+P D +GK++++++ NQF
Sbjct: 147 PAGAFDKLTNLQTLSLSTNQL-QSVPHGAFDRLGKLQTITLFG---NQF 191
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 53/131 (40%)
Query: 208 LDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYI 267
L+L NQ F +L+ L +L L N L+S L L L L NQ
Sbjct: 64 LNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP 123
Query: 268 PRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKE 327
F LT L LRL+ N+L K+ +L L L+ NQ + V + L L+
Sbjct: 124 SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQT 183
Query: 328 LALLYNHLSGS 338
+ L N S
Sbjct: 184 ITLFGNQFDCS 194
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 75/174 (43%), Gaps = 12/174 (6%)
Query: 188 DNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSL 247
D++ SG IP+D LDL S + F L+ L L L N L +
Sbjct: 27 DSVPSG-IPADTEK------LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF 79
Query: 248 GKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDL 306
L L L NQ F +LT L L L N+L S+P + ++ L L L
Sbjct: 80 DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRL 138
Query: 307 NENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLI--LRELLLSGNHF 358
N NQ + + + LTNL+ L+L N L S+P + + L+ + L GN F
Sbjct: 139 NTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 80/200 (40%), Gaps = 28/200 (14%)
Query: 75 GISCNDAGRVINISLRNTGLSGTLHGFSFSSFP-----RLAYLDLTGSGLFGTIPPEVGL 129
G +CN+ + ++ G S S P LDL +GL
Sbjct: 9 GCTCNEGKKEVDC-----------QGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRG 57
Query: 130 LSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDN 189
L+ L +L +D N+L L+ + L +N L S+P LG H++ L D
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLP--LGVFDHLTQL---DK 111
Query: 190 LFSG-----FIPSDIGNS-KSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPI 243
L+ G +PS + + + L L++NQ F L+NL++L L N L S
Sbjct: 112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171
Query: 244 LSSLGKFKSLIDLQLNENQF 263
+ + L + L NQF
Sbjct: 172 HGAFDRLGKLQTITLFGNQF 191
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 110/221 (49%), Gaps = 26/221 (11%)
Query: 130 LSHLKFLFIDTNKL-DGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYD 188
L+ L+ L I +NK+ D S+ + +L+++E +N ++ P LG L+++ L +
Sbjct: 172 LTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 226
Query: 189 NLFSGFIPSDIGNSKSIFNL---DLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILS 245
N DIG S+ NL DL++NQ S PL L+ L L L N +S+ +S
Sbjct: 227 NQLK-----DIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISN--IS 277
Query: 246 SLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLD 305
L +L +L+LNENQ P S NL +L+ L L N + P + + L L
Sbjct: 278 PLAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 333
Query: 306 LNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNL 346
+ N+ V S++NLTN+ L+ +N +S P L NL
Sbjct: 334 FSNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANL 370
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 109/232 (46%), Gaps = 25/232 (10%)
Query: 274 LTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYN 333
L +L+ + S N+L P + + L + +N NQ + P ++NLTNL L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 334 HLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRN 392
++ P L NL L L LS N + + +L+ + S N P + N
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LAN 171
Query: 393 CTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMN 452
T+L R+ ++ N ++ +IS LA NL + ++ NN +I+ G LD L+++ N
Sbjct: 172 LTTLERLDISSNKVS-DIS-VLAKLTNLESL-IATNNQISDITP-LGILTNLDELSLNGN 227
Query: 453 NITGGIPREIG---NSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
+ ++IG + + L LDL+ N I P L L LT+L L NQ
Sbjct: 228 QL-----KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 272
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 110/221 (49%), Gaps = 26/221 (11%)
Query: 130 LSHLKFLFIDTNKL-DGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYD 188
L+ L+ L I +NK+ D S+ + +L+++E +N ++ P LG L+++ L +
Sbjct: 171 LTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 225
Query: 189 NLFSGFIPSDIGNSKSIFNL---DLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILS 245
N DIG S+ NL DL++NQ S PL L+ L L L N +S+ +S
Sbjct: 226 NQLK-----DIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISN--IS 276
Query: 246 SLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLD 305
L +L +L+LNENQ P S NL +L+ L L N + P + + L L
Sbjct: 277 PLAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 332
Query: 306 LNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNL 346
+ N+ V S++NLTN+ L+ +N +S P L NL
Sbjct: 333 FSNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANL 369
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 108/235 (45%), Gaps = 32/235 (13%)
Query: 274 LTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYN 333
L +L+ + S N+L P + + L + +N NQ + P ++NLTNL L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 334 HLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVR- 391
++ P L NL L L LS N I AL T + G T ++
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNT--------ISDISALSGLTSLQQLNFGNQVTDLKP 167
Query: 392 --NCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNV 449
N T+L R+ ++ N ++ +IS LA NL + ++ NN +I+ G LD L++
Sbjct: 168 LANLTTLERLDISSNKVS-DIS-VLAKLTNLESL-IATNNQISDITP-LGILTNLDELSL 223
Query: 450 SMNNITGGIPREIG---NSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
+ N + ++IG + + L LDL+ N I P L L LT+L L NQ
Sbjct: 224 NGNQL-----KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 271
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 60/116 (51%), Gaps = 3/116 (2%)
Query: 226 LSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKN 285
L+NL L L GN L S K +L +L L ENQ F LT+L+ L L+ N
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN 143
Query: 286 ELFGSIPDEI-GKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIP 340
+L S+P + K+ +L+ LDL+ NQ + + LT LK+L L N L S+P
Sbjct: 144 QL-QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK-SVP 197
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/178 (30%), Positives = 85/178 (47%), Gaps = 8/178 (4%)
Query: 226 LSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKN 285
L N++ L L GN L +S+L + +L L L NQ F LT+L L L +N
Sbjct: 62 LPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 286 ELFGSIPDEI-GKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLG 344
+L S+PD + K+ +L+ L+L NQ + + LTNL EL L YN L S+P +
Sbjct: 120 QL-QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVF 177
Query: 345 NLI--LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVH 400
+ + L++L L N + +L+ + +N + T P +R + I H
Sbjct: 178 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-GIRYLSEWINKH 234
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 65/147 (44%), Gaps = 5/147 (3%)
Query: 198 DIGNSKSIFNLD---LSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLI 254
DI K + NL L+ NQ F L+NLK L L N L S K +L
Sbjct: 77 DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136
Query: 255 DLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQFKG 313
L L NQ F LT+L+ L LS N+L S+P+ + K+ L L L +NQ K
Sbjct: 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQNQLKS 195
Query: 314 VLPPSISNLTNLKELALLYNHLSGSIP 340
V LT+L+ + L N + P
Sbjct: 196 VPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 65/166 (39%), Gaps = 2/166 (1%)
Query: 127 VGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFI 186
+ L ++++L + NKL + +L+++ L N L L+++ L +
Sbjct: 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116
Query: 187 YDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSS 246
+N ++ L+L+ NQ F L+NL L L N L S
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV 176
Query: 247 LGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIP 292
K L DL+L +NQ F LTSL + L N + P
Sbjct: 177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 63/140 (45%), Gaps = 5/140 (3%)
Query: 198 DIGNSKSIFNLD---LSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLI 254
DI K + NL L+ NQ F L+NLK L L N L S K +L
Sbjct: 77 DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136
Query: 255 DLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQFKG 313
L L NQ F LT+L+ L L N+L S+P+ + K+ L L LN+NQ K
Sbjct: 137 YLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQL-QSLPEGVFDKLTQLKQLSLNDNQLKS 195
Query: 314 VLPPSISNLTNLKELALLYN 333
V LT+L + LL N
Sbjct: 196 VPDGVFDRLTSLTHIWLLNN 215
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 60/116 (51%), Gaps = 3/116 (2%)
Query: 226 LSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKN 285
L+NL L L GN L S K +L +L L ENQ F LT+L+ L L N
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHN 143
Query: 286 ELFGSIPDEI-GKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIP 340
+L S+P + K+ +L+ LDL+ NQ + + LT LK+L+L N L S+P
Sbjct: 144 QL-QSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK-SVP 197
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 68/136 (50%), Gaps = 7/136 (5%)
Query: 226 LSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKN 285
L N++ L L GN L +S+L + +L L L NQ F LT+L L L +N
Sbjct: 62 LPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119
Query: 286 ELFGSIPDEI-GKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLG 344
+L S+PD + K+ +L+ L L NQ + + LTNL L L N L S+P +
Sbjct: 120 QL-QSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQ-SLPEGVF 177
Query: 345 NLI--LRELLLSGNHF 358
+ + L++L L+ N
Sbjct: 178 DKLTQLKQLSLNDNQL 193
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 7/168 (4%)
Query: 75 GISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLK 134
++ N+ + I N+ + ++ G + P + YL L G+ L + L++L
Sbjct: 34 AVTQNELNSIDQIIANNSDIK-SVQGIQY--LPNVRYLALGGNKLHDI--SALKELTNLT 88
Query: 135 FLFIDTNKLDGSIPPEV-GQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSG 193
+L + N+L S+P V +L++++ L N L L++++ L++Y N
Sbjct: 89 YLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQS 147
Query: 194 FIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSS 241
++ LDL +NQ F L+ LK L L N L S
Sbjct: 148 LPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS 195
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 109/221 (49%), Gaps = 26/221 (11%)
Query: 130 LSHLKFLFIDTNKL-DGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYD 188
L+ L+ L I +NK+ D S+ + +L+++E +N ++ P LG L+++ L +
Sbjct: 175 LTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 229
Query: 189 NLFSGFIPSDIGNSKSIFNL---DLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILS 245
N DIG S+ NL DL++NQ S PL L+ L L L N +S+ +S
Sbjct: 230 NQLK-----DIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISN--IS 280
Query: 246 SLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLD 305
L +L +L+LNENQ P S NL +L+ L L N + P + + L L
Sbjct: 281 PLAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 336
Query: 306 LNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNL 346
N+ V S++NLTN+ L+ +N +S P L NL
Sbjct: 337 FANNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANL 373
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 108/235 (45%), Gaps = 32/235 (13%)
Query: 274 LTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYN 333
L +L+ + S N+L P + + L + +N NQ + P ++NLTNL L L N
Sbjct: 66 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 121
Query: 334 HLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVR- 391
++ P L NL L L LS N I AL T + G T ++
Sbjct: 122 QITDIDP--LKNLTNLNRLELSSNT--------ISDISALSGLTSLQQLSFGNQVTDLKP 171
Query: 392 --NCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNV 449
N T+L R+ ++ N ++ +IS LA NL + ++ NN +I+ G LD L++
Sbjct: 172 LANLTTLERLDISSNKVS-DIS-VLAKLTNLESL-IATNNQISDITP-LGILTNLDELSL 227
Query: 450 SMNNITGGIPREIG---NSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
+ N + ++IG + + L LDL+ N I P L L LT+L L NQ
Sbjct: 228 NGNQL-----KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 275
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 60/134 (44%), Gaps = 2/134 (1%)
Query: 208 LDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYI 267
LDL +N F L++L LYL GN L S K SL L L+ NQ
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 268 PRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQFKGVLPPSISNLTNLK 326
F LT L L L+ N+L S+PD + K+ L L L +NQ K V LT+L+
Sbjct: 93 NGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151
Query: 327 ELALLYNHLSGSIP 340
+ L N + P
Sbjct: 152 YIWLHDNPWDCTCP 165
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 9/134 (6%)
Query: 223 FGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRL 282
F L++L L L N L S K L +L LN NQ F LT L LRL
Sbjct: 72 FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL 131
Query: 283 SKNELFGSIPDEI-GKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPP 341
+N+L S+PD + ++ SL + L++N + P ++ L+ N SG +
Sbjct: 132 YQNQL-KSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSGVVRN 183
Query: 342 SLGNLILRELLLSG 355
S G++ SG
Sbjct: 184 SAGSVAPDSAKCSG 197
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 38/89 (42%)
Query: 204 SIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQF 263
S+ L+LS+NQ F L+ LK L L N L S K L DL+L +NQ
Sbjct: 77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Query: 264 TGYIPRSFGNLTSLSTLRLSKNELFGSIP 292
F LTSL + L N + P
Sbjct: 137 KSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 4/144 (2%)
Query: 127 VGLLSHLKFLFIDTNKLDGSIPPEV-GQLSSMEVFFLCSNYLNGSVPPSLGN-LSHISLL 184
G+ + +L ++TN L S+P V +L+S+ +L N L S+P + N L+ ++ L
Sbjct: 24 TGIPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYL 81
Query: 185 FIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPIL 244
+ N + L L++NQ F L+ LK L LY N L S
Sbjct: 82 NLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD 141
Query: 245 SSLGKFKSLIDLQLNENQFTGYIP 268
+ SL + L++N + P
Sbjct: 142 GVFDRLTSLQYIWLHDNPWDCTCP 165
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 95/214 (44%), Gaps = 10/214 (4%)
Query: 230 KSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFG 289
+ ++L+GN +S +S ++L L L+ N G +F LT L L LS N
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 290 SI-PDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPP----SLG 344
+ P + L L L+ + + P L L+ L L N+L ++P LG
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQ-ALPDNTFRDLG 152
Query: 345 NLILRELLLSGNHFAGYLPYNICQG-GALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNG 403
NL L L GN +P + +G +L+ + +NH P + R+ L+ ++L
Sbjct: 153 NLT--HLFLHGNRIPS-VPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFA 209
Query: 404 NNLTGNISEALAIYPNLTFIDLSRNNFYGEISSN 437
NNL+ +E L +L ++ L+ N + + +
Sbjct: 210 NNLSMLPAEVLVPLRSLQYLRLNDNPWVCDCRAR 243
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 74/181 (40%), Gaps = 3/181 (1%)
Query: 133 LKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSN-YLNGSVPPSLGNLSHISLLFIYDNLF 191
L L++ +N L G L+ +E L N L P + L H+ L +
Sbjct: 57 LTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGL 116
Query: 192 SGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFK 251
P ++ L L N F +L NL L+L+GN + S +
Sbjct: 117 QELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLH 176
Query: 252 SLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQ 310
SL L L++N P +F +L L TL L N L +P E+ +RSL L LN+N
Sbjct: 177 SLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL-SMLPAEVLVPLRSLQYLRLNDNP 235
Query: 311 F 311
+
Sbjct: 236 W 236
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 109/221 (49%), Gaps = 26/221 (11%)
Query: 130 LSHLKFLFIDTNKL-DGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYD 188
L+ L+ L I +NK+ D S+ + +L+++E +N ++ P LG L+++ L +
Sbjct: 176 LTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNG 230
Query: 189 NLFSGFIPSDIGNSKSIFNL---DLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILS 245
N DIG S+ NL DL++NQ S PL L+ L L L N +S+ +S
Sbjct: 231 NQLK-----DIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISN--IS 281
Query: 246 SLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLD 305
L +L +L+LNENQ P S NL +L+ L L N + P + + L L
Sbjct: 282 PLAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337
Query: 306 LNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNL 346
N+ V S++NLTN+ L+ +N +S P L NL
Sbjct: 338 FYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANL 374
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 108/235 (45%), Gaps = 32/235 (13%)
Query: 274 LTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYN 333
L +L+ + S N+L P + + L + +N NQ + P ++NLTNL L L N
Sbjct: 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 122
Query: 334 HLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVR- 391
++ P L NL L L LS N I AL T + G T ++
Sbjct: 123 QITDIDP--LKNLTNLNRLELSSNT--------ISDISALSGLTSLQQLSFGNQVTDLKP 172
Query: 392 --NCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNV 449
N T+L R+ ++ N ++ +IS LA NL + ++ NN +I+ G LD L++
Sbjct: 173 LANLTTLERLDISSNKVS-DIS-VLAKLTNLESL-IATNNQISDITP-LGILTNLDELSL 228
Query: 450 SMNNITGGIPREIG---NSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
+ N + ++IG + + L LDL+ N I P L L LT+L L NQ
Sbjct: 229 NGNQL-----KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 276
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 108/222 (48%), Gaps = 28/222 (12%)
Query: 130 LSHLKFLFIDTNKL-DGSIPPEVGQLSSMEVFFLCSNYLNGSVPPS-LGNLSHISLLFIY 187
L+ L+ L I +NK+ D S+ + +L+++E +N ++ P L NL +SL
Sbjct: 171 LTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQISDITPLGILTNLDELSL---- 223
Query: 188 DNLFSGFIPSDIGNSKSIFNL---DLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPIL 244
+G DIG S+ NL DL++NQ S PL L+ L L L N +S+ +
Sbjct: 224 ----NGNQLKDIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISN--I 275
Query: 245 SSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVL 304
S L +L +L+LNENQ P S NL +L+ L L N + P + + L L
Sbjct: 276 SPLAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRL 331
Query: 305 DLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNL 346
N+ V S++NLTN+ L+ +N +S P L NL
Sbjct: 332 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANL 369
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 108/235 (45%), Gaps = 32/235 (13%)
Query: 274 LTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYN 333
L +L+ + S N+L P + + L + +N NQ + P ++NLTNL L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 334 HLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVR- 391
++ P L NL L L LS N I AL T + G T ++
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNT--------ISDISALSGLTSLQQLNFGNQVTDLKP 167
Query: 392 --NCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNV 449
N T+L R+ ++ N ++ +IS LA NL + ++ NN +I+ G LD L++
Sbjct: 168 LANLTTLERLDISSNKVS-DIS-VLAKLTNLESL-IATNNQISDITP-LGILTNLDELSL 223
Query: 450 SMNNITGGIPREIG---NSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
+ N + ++IG + + L LDL+ N I P L L LT+L L NQ
Sbjct: 224 NGNQL-----KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 271
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 108/222 (48%), Gaps = 28/222 (12%)
Query: 130 LSHLKFLFIDTNKL-DGSIPPEVGQLSSMEVFFLCSNYLNGSVPPS-LGNLSHISLLFIY 187
L+ L+ L I +NK+ D S+ + +L+++E +N ++ P L NL +SL
Sbjct: 172 LTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQISDITPLGILTNLDELSL---- 224
Query: 188 DNLFSGFIPSDIGNSKSIFNL---DLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPIL 244
+G DIG S+ NL DL++NQ S PL L+ L L L N +S+ +
Sbjct: 225 ----NGNQLKDIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISN--I 276
Query: 245 SSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVL 304
S L +L +L+LNENQ P S NL +L+ L L N + P + + L L
Sbjct: 277 SPLAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRL 332
Query: 305 DLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNL 346
N+ V S++NLTN+ L+ +N +S P L NL
Sbjct: 333 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANL 370
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 108/232 (46%), Gaps = 25/232 (10%)
Query: 274 LTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYN 333
L +L+ + S N+L P + + L + +N NQ + P ++NLTNL L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 334 HLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRN 392
++ P L NL L L LS N + + +L+ S N P + N
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLNFSSNQVTDLKP--LAN 171
Query: 393 CTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMN 452
T+L R+ ++ N ++ +IS LA NL + ++ NN +I+ G LD L+++ N
Sbjct: 172 LTTLERLDISSNKVS-DIS-VLAKLTNLESL-IATNNQISDITP-LGILTNLDELSLNGN 227
Query: 453 NITGGIPREIG---NSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
+ ++IG + + L LDL+ N I P L L LT+L L NQ
Sbjct: 228 QL-----KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 272
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 71/222 (31%), Positives = 108/222 (48%), Gaps = 28/222 (12%)
Query: 130 LSHLKFLFIDTNKL-DGSIPPEVGQLSSMEVFFLCSNYLNGSVPPS-LGNLSHISLLFIY 187
L+ L+ L I +NK+ D S+ + +L+++E +N ++ P L NL +SL
Sbjct: 172 LTTLERLDISSNKVSDISV---LAKLTNLESLIATNNQISDITPLGILTNLDELSL---- 224
Query: 188 DNLFSGFIPSDIGNSKSIFNL---DLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPIL 244
+G DIG S+ NL DL++NQ S PL L+ L L L N +S+ +
Sbjct: 225 ----NGNQLKDIGTLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQISN--I 276
Query: 245 SSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVL 304
S L +L +L+LNENQ P S NL +L+ L L N + P + + L L
Sbjct: 277 SPLAGLTALTNLELNENQLEDISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRL 332
Query: 305 DLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNL 346
N+ V S++NLTN+ L+ +N +S P L NL
Sbjct: 333 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANL 370
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 109/232 (46%), Gaps = 25/232 (10%)
Query: 274 LTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYN 333
L +L+ + S N+L P + + L + +N NQ + P ++NLTNL L L N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 334 HLSGSIPPSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRN 392
++ P L NL L L LS N + + +L+ + S N P + N
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LAN 171
Query: 393 CTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMN 452
T+L R+ ++ N ++ +IS LA NL + ++ NN +I+ G LD L+++ N
Sbjct: 172 LTTLERLDISSNKVS-DIS-VLAKLTNLESL-IATNNQISDITP-LGILTNLDELSLNGN 227
Query: 453 NITGGIPREIG---NSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
+ ++IG + + L LDL+ N I P L L LT+L L NQ
Sbjct: 228 QL-----KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 272
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 61/139 (43%), Gaps = 3/139 (2%)
Query: 195 IPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLI 254
+P+ I + I L L NQ + P F +L NLK LYL N L + + L
Sbjct: 34 VPAGIPTNAQI--LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT 91
Query: 255 DLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGV 314
L L NQ T F L L L + N+L +P I ++ L+ L L++NQ K +
Sbjct: 92 VLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSI 150
Query: 315 LPPSISNLTNLKELALLYN 333
+ L++L L N
Sbjct: 151 PHGAFDRLSSLTHAYLFGN 169
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 256 LQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQFKGV 314
L L++NQ T P F +L +L L L N+L G++P + + L+VLDL NQ V
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-V 102
Query: 315 LPPSI-SNLTNLKELALLYNHLS 336
LP ++ L +LKEL + N L+
Sbjct: 103 LPSAVFDRLVHLKELFMCCNKLT 125
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 103/247 (41%), Gaps = 27/247 (10%)
Query: 275 TSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNEN--QFKGVLPPSISNLTNLKELALL 331
+S + L L N+L S+P + K+ L+ L L+ N FKG S T+LK L L
Sbjct: 28 SSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86
Query: 332 YNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIF---------TVSENHF 382
+N G I S L L +L + N+ Q +F +S H
Sbjct: 87 FN---GVITMSSNFLGLEQL-----EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 138
Query: 383 QGTIPTSVRNCTSLIRVHLNGNNLTGN-ISEALAIYPNLTFIDLSRNNFYGEISSNWGKC 441
+ +SL + + GN+ N + + NLTF+DLS+ + +
Sbjct: 139 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198
Query: 442 PKLDTLNVSMNNI--TGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKL-NSLTKLILR 498
L LN+S NN P + NS LQ LD SLNHI+ +EL +SL L L
Sbjct: 199 SSLQVLNMSHNNFFSLDTFPYKCLNS--LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256
Query: 499 GNQRAVT 505
N A T
Sbjct: 257 QNDFACT 263
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 73/142 (51%), Gaps = 10/142 (7%)
Query: 197 SDIGNSKSIFNLDLSSNQFSGPIPL---FFGNLSNLKSL-YLYGNSLSSPILSSLGKFKS 252
SD G + S+ LDLS F+G I + F G L L+ L + + N S ++
Sbjct: 73 SDFGTT-SLKYLDLS---FNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRN 127
Query: 253 LIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGS-IPDEIGKMRSLSVLDLNENQF 311
LI L ++ F L+SL L+++ N + +PD ++R+L+ LDL++ Q
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187
Query: 312 KGVLPPSISNLTNLKELALLYN 333
+ + P + ++L++L+ L + +N
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHN 209
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 90/221 (40%), Gaps = 25/221 (11%)
Query: 300 SLSVLDLNEN--QFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNH 357
SL LDL+ N FKG S T+LK L L +N G I S L L +L
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN---GVITMSSNFLGLEQL-----E 399
Query: 358 FAGYLPYNICQGGALEIF---------TVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTG 408
+ N+ Q +F +S H + +SL + + GN+
Sbjct: 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459
Query: 409 N-ISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNI--TGGIPREIGNS 465
N + + NLTF+DLS+ + + L LN+S NN P + NS
Sbjct: 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 519
Query: 466 SQLQALDLSLNHIVGEIPKELGKL-NSLTKLILRGNQRAVT 505
LQ LD SLNHI+ +EL +SL L L N A T
Sbjct: 520 --LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 558
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 89/217 (41%), Gaps = 33/217 (15%)
Query: 100 GFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEV 159
FS P L +LDL+ +GL G S F G+ + LS V
Sbjct: 340 AFSEVDLPSLEFLDLSRNGL-----SFKGCCSQSDF---------GTTSLKYLDLSFNGV 385
Query: 160 FFLCSNYLNGSVPPSLGNLSHISLLFIYDNL-----FSGFIPSDIGNSKSIFNLDLSSNQ 214
+ SN+L L L H+ F + NL FS F+ + +++ LD+S
Sbjct: 386 ITMSSNFL------GLEQLEHLD--FQHSNLKQMSEFSVFL-----SLRNLIYLDISHTH 432
Query: 215 FSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSL-GKFKSLIDLQLNENQFTGYIPRSFGN 273
F LS+L+ L + GNS L + + ++L L L++ Q P +F +
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 274 LTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQ 310
L+SL L +S N F + SL VLD + N
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 529
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 73/142 (51%), Gaps = 10/142 (7%)
Query: 197 SDIGNSKSIFNLDLSSNQFSGPIPL---FFGNLSNLKSL-YLYGNSLSSPILSSLGKFKS 252
SD G + S+ LDLS F+G I + F G L L+ L + + N S ++
Sbjct: 368 SDFGTT-SLKYLDLS---FNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRN 422
Query: 253 LIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGS-IPDEIGKMRSLSVLDLNENQF 311
LI L ++ F L+SL L+++ N + +PD ++R+L+ LDL++ Q
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482
Query: 312 KGVLPPSISNLTNLKELALLYN 333
+ + P + ++L++L+ L + +N
Sbjct: 483 EQLSPTAFNSLSSLQVLNMSHN 504
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 63/158 (39%), Gaps = 2/158 (1%)
Query: 58 TKATTNVSSKISPCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGS 117
+ N++ + +Y I N N+ L L L +SF SFP L LDL+
Sbjct: 4 VEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRC 62
Query: 118 GLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGN 177
+ LSHL L + N + LSS++ L +G+
Sbjct: 63 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122
Query: 178 LSHISLLFIYDNLFSGF-IPSDIGNSKSIFNLDLSSNQ 214
L + L + NL F +P N ++ +LDLSSN+
Sbjct: 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 208 LDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYI 267
LDLS + + +LS+L +L L GN + S L + SL L E
Sbjct: 57 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116
Query: 268 PRSFGNLTSLSTLRLSKNELFG-SIPDEIGKMRSLSVLDLNENQFKGV 314
G+L +L L ++ N + +P+ + +L LDL+ N+ + +
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 60/115 (52%), Gaps = 5/115 (4%)
Query: 252 SLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQ 310
S L+L N+ F LT L+ L LS+N++ S+PD + K+ L++L L+EN+
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHENK 87
Query: 311 FKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLI--LRELLLSGNHFAGYLP 363
+ + LT LKELAL N L S+P + + + L+++ L N + P
Sbjct: 88 LQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 2/115 (1%)
Query: 227 SNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNE 286
S+ L L N L S K L L L++NQ F LT L+ L L +N+
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87
Query: 287 LFGSIPDEI-GKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIP 340
L S+P+ + K+ L L L+ NQ K V LT+L+++ L N S P
Sbjct: 88 L-QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
Query: 195 IPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLI 254
+P+ I +S + L+L SN+ F L+ L L L N + S K L
Sbjct: 22 VPTGIPSSAT--RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT 79
Query: 255 DLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQFKG 313
L L+EN+ F LT L L L N+L S+PD I ++ SL + L+ N +
Sbjct: 80 ILYLHENKLQSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWDC 138
Query: 314 VLP 316
P
Sbjct: 139 SCP 141
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 62/132 (46%), Gaps = 5/132 (3%)
Query: 215 FSGPIPLFFGNL--SNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFG 272
F P F L S +K+ L + + + + S F L L L +N+ +F
Sbjct: 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320
Query: 273 NLTSLSTLRLSKNELFGSIPDEIGK-MRSLSVLDLNENQFKGVLPPSISNLTNLKELALL 331
LT L L LS+N L GSI + + + L VLDL+ N + + S L NLKELAL
Sbjct: 321 GLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD 379
Query: 332 YNHLSGSIPPSL 343
N L S+P +
Sbjct: 380 TNQLK-SVPDGI 390
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 118/311 (37%), Gaps = 69/311 (22%)
Query: 252 SLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSI--PDEIGKMRSLSVLDLNEN 309
SLI L+L+ NQF +F L +L L L++ L G++ + + SL +L L +N
Sbjct: 80 SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139
Query: 310 QFKGVLPPSIS-NLTNLKELALLYNHLSGSIPPSLGNL------ILR------------- 349
K + P S N+ L L +N + L N +LR
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW 199
Query: 350 ----------------ELLLSGNHFAGYLP---YNICQGGALEIFTVSENH--------- 381
L LSGN F + ++ G ++ +S ++
Sbjct: 200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT 259
Query: 382 ---------FQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYG 432
F+G + V+ C L+ + + + + + +L + L++N
Sbjct: 260 NFKDPDNFTFKGLEASGVKTC------DLSKSKIFALLKSVFSHFTDLEQLTLAQNEI-N 312
Query: 433 EISSN--WGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLN 490
+I N WG L LN+S N + R N +L+ LDLS NHI + L
Sbjct: 313 KIDDNAFWG-LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371
Query: 491 SLTKLILRGNQ 501
+L +L L NQ
Sbjct: 372 NLKELALDTNQ 382
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 15/194 (7%)
Query: 124 PPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISL 183
P + LSHL+ ID L +P Q + +E L N L ++P S+ +L+ +
Sbjct: 97 PDQAFRLSHLQHXTIDAAGL-XELPDTXQQFAGLETLTLARNPLR-ALPASIASLNRLRE 154
Query: 184 LFIYDNLFSGFIPSDI------GNSKSIFNLDLSSNQFSG--PIPLFFGNLSNLKSLYLY 235
L I +P + G + + NL +++G +P NL NLKSL +
Sbjct: 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIR 214
Query: 236 GNSLSS--PILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPD 293
+ LS+ P + L K + L DL+ Y P FG L L L ++P
Sbjct: 215 NSPLSALGPAIHHLPKLEEL-DLR-GCTALRNYPP-IFGGRAPLKRLILKDCSNLLTLPL 271
Query: 294 EIGKMRSLSVLDLN 307
+I ++ L LDL
Sbjct: 272 DIHRLTQLEKLDLR 285
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 89/221 (40%), Gaps = 25/221 (11%)
Query: 300 SLSVLDLNEN--QFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNH 357
SL LDL+ N FKG S +LK L L +N G I S L L +L
Sbjct: 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFN---GVITMSSNFLGLEQL-----E 423
Query: 358 FAGYLPYNICQGGALEIF---------TVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTG 408
+ N+ Q +F +S H + +SL + + GN+
Sbjct: 424 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 483
Query: 409 N-ISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNI--TGGIPREIGNS 465
N + + NLTF+DLS+ + + L LN+S NN P + NS
Sbjct: 484 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 543
Query: 466 SQLQALDLSLNHIVGEIPKELGKL-NSLTKLILRGNQRAVT 505
LQ LD SLNHI+ +EL +SL L L N A T
Sbjct: 544 --LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 90/217 (41%), Gaps = 33/217 (15%)
Query: 100 GFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEV 159
FS P L +LDL+ +GL G S F G+I + LS V
Sbjct: 364 AFSEVDLPSLEFLDLSRNGL-----SFKGCCSQSDF---------GTISLKYLDLSFNGV 409
Query: 160 FFLCSNYLNGSVPPSLGNLSHISLLFIYDNL-----FSGFIPSDIGNSKSIFNLDLSSNQ 214
+ SN+L L L H+ F + NL FS F+ + +++ LD+S
Sbjct: 410 ITMSSNFL------GLEQLEHLD--FQHSNLKQMSEFSVFL-----SLRNLIYLDISHTH 456
Query: 215 FSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSL-GKFKSLIDLQLNENQFTGYIPRSFGN 273
F LS+L+ L + GNS L + + ++L L L++ Q P +F +
Sbjct: 457 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 516
Query: 274 LTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQ 310
L+SL L +S N F + SL VLD + N
Sbjct: 517 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 553
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 69/173 (39%), Gaps = 5/173 (2%)
Query: 46 LQSRNQSRLPSW---TKATTNVSSKISPCAWYGISCNDAGRVINISLRNTGLSGTLHGFS 102
L + N S SW + N++ + +Y I N N+ L L L +S
Sbjct: 13 LAAANSSIPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRH-LGSYS 71
Query: 103 FSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFL 162
F SFP L LDL+ + LSHL L + N + LSS++
Sbjct: 72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131
Query: 163 CSNYLNGSVPPSLGNLSHISLLFIYDNLFSGF-IPSDIGNSKSIFNLDLSSNQ 214
L +G+L + L + NL F +P N ++ +LDLSSN+
Sbjct: 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 271 FGNLTSLSTLRLSKNELFGS-IPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELA 329
F L+SL L+++ N + +PD ++R+L+ LDL++ Q + + P + ++L++L+ L
Sbjct: 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524
Query: 330 LLYN 333
+ +N
Sbjct: 525 MSHN 528
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 208 LDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYI 267
LDLS + + +LS+L +L L GN + S L + SL L E
Sbjct: 81 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 140
Query: 268 PRSFGNLTSLSTLRLSKNELFG-SIPDEIGKMRSLSVLDLNENQFKGV 314
G+L +L L ++ N + +P+ + +L LDL+ N+ + +
Sbjct: 141 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 189 NLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLG 248
N+ +P+ I K L L++NQ + P F +L NL+ LY N L++
Sbjct: 21 NIRLASVPAGIPTDKQ--RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD 78
Query: 249 KFKSLIDLQLNENQFTGYIPR-SFGNLTSLSTLRLSKN 285
K L L LN+N IPR +F NL SL+ + L N
Sbjct: 79 KLTQLTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLYNN 115
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%)
Query: 256 LQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVL 315
L LN NQ T P F +L +L L + N+L K+ L+ LDLN+N K +
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97
Query: 316 PPSISNLTNLKELALLYN 333
+ NL +L + L N
Sbjct: 98 RGAFDNLKSLTHIYLYNN 115
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 228 NLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNEL 287
++ LYL GN + + L +K L + L+ N+ + +SF N+T L TL LS N L
Sbjct: 32 DVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 288 FGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHL 335
P ++SL +L L+ N V + ++L+ L LA+ N L
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 3/136 (2%)
Query: 153 QLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSS 212
+ + ++ CSN +P G ++ L++ N F+ +P ++ N K + +DLS+
Sbjct: 7 ECTCLDTVVRCSNKGLKVLPK--GIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSN 63
Query: 213 NQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFG 272
N+ S F N++ L +L L N L + KSL L L+ N + +F
Sbjct: 64 NRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFN 123
Query: 273 NLTSLSTLRLSKNELF 288
+L++LS L + N L+
Sbjct: 124 DLSALSHLAIGANPLY 139
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 10/95 (10%)
Query: 267 IPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLK 326
IPR ++ L L N+ F +P E+ + L+++DL+ N+ + S SN+T L
Sbjct: 29 IPRD------VTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81
Query: 327 ELALLYNHLSGSIPPSL--GNLILRELLLSGNHFA 359
L L YN L IPP G LR L L GN +
Sbjct: 82 TLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 396 LIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNIT 455
+ ++L+GN T + + L+ Y +LT IDLS N + ++ +L TL +S N +
Sbjct: 33 VTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 456 GGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKL 495
PR L+ L L N I +P+ G N L+ L
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGNDI-SVVPE--GAFNDLSAL 128
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 3/142 (2%)
Query: 195 IPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLI 254
+P DI +S N+DLS N F N S L+ L L + + + L
Sbjct: 26 VPDDIPSSTK--NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 83
Query: 255 DLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGV 314
+L L N + P SF LTSL L + +L IG++ +L L++ N
Sbjct: 84 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC 143
Query: 315 -LPPSISNLTNLKELALLYNHL 335
LP SNLTNL + L YN++
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYI 165
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 128/302 (42%), Gaps = 44/302 (14%)
Query: 212 SNQFSGPIPLFFGNLSNLKSLYLYGNSLSS-PILSSLGKFKSLIDLQLNENQFTGYIPRS 270
+N FS I + F L+N+ ++ L G S+ + K++SL ++ QF
Sbjct: 271 TNDFSDDI-VKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL---- 325
Query: 271 FGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQ--FKGVLPPSISNLTNLKEL 328
+L L +L L+ N+ GSI + + SLS LDL+ N F G S +L+ L
Sbjct: 326 --DLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381
Query: 329 ALLYNHLSGSIPPSLGNLILREL---------LLSGNHFAGYLPYNICQGGALEI-FTVS 378
L +N G+I S + L EL L F+ +L + L+I +T +
Sbjct: 382 DLSFN---GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE--KLLYLDISYTNT 436
Query: 379 ENHFQGTIPTSVRNCTSLIRVHLNGNNLTGN-ISEALAIYPNLTFIDLSRNNFYGEISSN 437
+ F G TSL + + GN+ N +S A NLTF+DLS+ +IS
Sbjct: 437 KIDFDGIF----LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL-EQIS-- 489
Query: 438 WG---KCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNH------IVGEIPKELGK 488
WG +L LN+S NN+ L LD S N I+ PK L
Sbjct: 490 WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAF 549
Query: 489 LN 490
N
Sbjct: 550 FN 551
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 122/273 (44%), Gaps = 37/273 (13%)
Query: 63 NVSSKISPCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGT 122
N +KI+ A+YG+ D +V+N+S L G L+ +F P++AY+DL + +
Sbjct: 300 NKINKIADEAFYGL---DNLQVLNLSY---NLLGELYSSNFYGLPKVAYIDLQKNHIAII 353
Query: 123 IPPEVGLLSHLKFLFIDTNKLD--GSIP--PEV----GQLSSMEVFFLCSNYL------- 167
L L+ L + N L IP P++ +L ++ L +N +
Sbjct: 354 QDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL 413
Query: 168 -NGSVPPSLGNLSHISLLFIYDNLFSGF----IPSDIGNSKSIFNLDLSSNQFSGPIPL- 221
N + L + H+ +L + N FS PS+ + + +F L + Q + L
Sbjct: 414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF-LGENMLQLAWETELC 472
Query: 222 --FFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNL-TSLS 278
F LS+L+ LYL N L+S +L L LN N+ T S +L +L
Sbjct: 473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL---SHNDLPANLE 529
Query: 279 TLRLSKNELFGSIPDEIGKMRSLSVLDLNENQF 311
L +S+N+L PD SLSVLD+ N+F
Sbjct: 530 ILDISRNQLLAPNPD---VFVSLSVLDITHNKF 559
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 420 LTFIDLSRNNFYGEISSNWGKCPK------LDTLNVSMNNITGGIPREIGNS-SQLQALD 472
L+F L+ N+ Y +S +WGKC L+ L+VS N T I N+ S+ QA
Sbjct: 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFS 235
Query: 473 LSL-NHIVG 480
L L +HI+G
Sbjct: 236 LILAHHIMG 244
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 119/281 (42%), Gaps = 37/281 (13%)
Query: 154 LSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSN 213
L ++V L N +N + L ++ +L + NL S+ + +DL N
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348
Query: 214 QFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGN 273
+ F L L++L L N+ L+++ S+ D+ L+ N+ +P+ N
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNA-----LTTIHFIPSIPDIFLSGNKLVT-LPKI--N 400
Query: 274 LTSLSTLRLSKNELFG-SIPDEIGKMRSLSVLDLNENQF---KGVLPPSISNLTNLKELA 329
LT+ + + LS+N L I + ++ L +L LN+N+F G PS +
Sbjct: 401 LTA-NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN--------- 450
Query: 330 LLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQG-GALEIFTVSENHFQGTIPT 388
PSL L L E +L + L +++ +G L++ ++ N+ P
Sbjct: 451 -----------PSLEQLFLGENMLQLA-WETELCWDVFEGLSHLQVLYLNHNYLNSLPPG 498
Query: 389 SVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNN 429
+ T+L + LN N LT L NL +D+SRN
Sbjct: 499 VFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQ 537
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 63/142 (44%), Gaps = 3/142 (2%)
Query: 195 IPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLI 254
+P DI +S N+DLS N F N S L+ L L + + + L
Sbjct: 21 VPDDIPSSTK--NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 78
Query: 255 DLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGV 314
+L L N + P SF LTSL L + +L IG++ +L L++ N
Sbjct: 79 NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC 138
Query: 315 -LPPSISNLTNLKELALLYNHL 335
LP SNLTNL + L YN++
Sbjct: 139 KLPAYFSNLTNLVHVDLSYNYI 160
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 128/302 (42%), Gaps = 44/302 (14%)
Query: 212 SNQFSGPIPLFFGNLSNLKSLYLYGNSLSS-PILSSLGKFKSLIDLQLNENQFTGYIPRS 270
+N FS I + F L+N+ ++ L G S+ + K++SL ++ QF
Sbjct: 266 TNDFSDDI-VKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL---- 320
Query: 271 FGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQ--FKGVLPPSISNLTNLKEL 328
+L L +L L+ N+ GSI + + SLS LDL+ N F G S +L+ L
Sbjct: 321 --DLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 376
Query: 329 ALLYNHLSGSIPPSLGNLILREL---------LLSGNHFAGYLPYNICQGGALEI-FTVS 378
L +N G+I S + L EL L F+ +L + L+I +T +
Sbjct: 377 DLSFN---GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE--KLLYLDISYTNT 431
Query: 379 ENHFQGTIPTSVRNCTSLIRVHLNGNNLTGN-ISEALAIYPNLTFIDLSRNNFYGEISSN 437
+ F G TSL + + GN+ N +S A NLTF+DLS+ +IS
Sbjct: 432 KIDFDGIF----LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL-EQIS-- 484
Query: 438 WG---KCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNH------IVGEIPKELGK 488
WG +L LN+S NN+ L LD S N I+ PK L
Sbjct: 485 WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAF 544
Query: 489 LN 490
N
Sbjct: 545 FN 546
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 58/131 (44%)
Query: 181 ISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLS 240
I+ + + N P K + +DLS+NQ S P F L +L SL LYGN ++
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 241 SPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRS 300
S SL L LN N+ +F +L +L+ L L N+L +R+
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153
Query: 301 LSVLDLNENQF 311
+ + L +N F
Sbjct: 154 IQTMHLAQNPF 164
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 58/131 (44%)
Query: 181 ISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLS 240
I+ + + N P K + +DLS+NQ S P F L +L SL LYGN ++
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 241 SPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRS 300
S SL L LN N+ +F +L +L+ L L N+L +R+
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA 153
Query: 301 LSVLDLNENQF 311
+ + L +N F
Sbjct: 154 IQTMHLAQNPF 164
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 61/152 (40%), Gaps = 26/152 (17%)
Query: 112 LDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSV 171
+D TG GL IP ++ L H L ++ N E+G++SS +F
Sbjct: 13 VDCTGRGL-KEIPRDIPL--HTTELLLNDN--------ELGRISSDGLF----------- 50
Query: 172 PPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKS 231
G L H+ L + N +G P+ + I L L N+ F L LK+
Sbjct: 51 ----GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKT 106
Query: 232 LYLYGNSLSSPILSSLGKFKSLIDLQLNENQF 263
L LY N +S + S SL L L N F
Sbjct: 107 LNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 255 DLQLNENQFTGYIPRS--FGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFK 312
+L LN+N+ G I FG L L L L +N+L G P+ + L L EN+ K
Sbjct: 33 ELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 313 GVLPPSISNLTNLKELALLYNHLSGSIPPSLGNL 346
+ L LK L L N +S +P S +L
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%)
Query: 222 FFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLR 281
FG L +L L L N L+ ++ + +LQL EN+ + F L L TL
Sbjct: 49 LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108
Query: 282 LSKNELFGSIPDEIGKMRSLSVLDLNENQF 311
L N++ +P + SL+ L+L N F
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 8/120 (6%)
Query: 114 LTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPP 173
++ GLFG +P HL L + N+L G P S ++ L N +
Sbjct: 44 ISSDGLFGRLP-------HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK 96
Query: 174 SLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPL-FFGNLSNLKSL 232
L + L +YDN S +P + S+ +L+L+SN F+ L +F KSL
Sbjct: 97 MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSL 156
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%)
Query: 256 LQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVL 315
L L +NQ T P F LT L+ L L N+L K+ L+ L LN+NQ K +
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
Query: 316 PPSISNLTNLKELALLYN 333
+ NL +L + LL N
Sbjct: 95 RGAFDNLKSLTHIWLLNN 112
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 195 IPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLI 254
+P+ I + + L L NQ + P F L+ L L L N L+ K L
Sbjct: 24 VPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLT 81
Query: 255 DLQLNENQFTGYIPR-SFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLS 302
L LN+NQ IPR +F NL SL+ + L N + D + R +S
Sbjct: 82 QLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWIS 129
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 43/111 (38%), Gaps = 2/111 (1%)
Query: 153 QLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSS 212
Q S CS SVP + + + L++YDN + P + LDL +
Sbjct: 6 QCSCSGTTVDCSGKSLASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDN 63
Query: 213 NQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQF 263
NQ + F L+ L L L N L S + KSL + L N +
Sbjct: 64 NQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW 114
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 275 TSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSI-SNLTNLKELALLYN 333
T+ L L N++ P ++ L+ LDL+ NQ VLP + LT L +L+L N
Sbjct: 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDN 88
Query: 334 HLSGSIP 340
L SIP
Sbjct: 89 QLK-SIP 94
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 38/78 (48%)
Query: 256 LQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVL 315
L L +NQ T P F LT L+ L L N+L K+ L+ L LN+NQ K +
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 102
Query: 316 PPSISNLTNLKELALLYN 333
+ NL +L + LL N
Sbjct: 103 RGAFDNLKSLTHIWLLNN 120
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 55/126 (43%), Gaps = 6/126 (4%)
Query: 169 GSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSN 228
GS PS + S ++ +L S +P+ I + + L L NQ + P F L+
Sbjct: 8 GSACPSQCSCSGTTVDCSGKSLAS--VPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQ 63
Query: 229 LKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPR-SFGNLTSLSTLRLSKNEL 287
L L L N L+ K L L LN+NQ IPR +F NL SL+ + L N
Sbjct: 64 LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-IPRGAFDNLKSLTHIWLLNNPW 122
Query: 288 FGSIPD 293
+ D
Sbjct: 123 DCACSD 128
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 43/111 (38%), Gaps = 2/111 (1%)
Query: 153 QLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSS 212
Q S CS SVP + + + L++YDN + P + LDL +
Sbjct: 14 QCSCSGTTVDCSGKSLASVPTGIPTTTQV--LYLYDNQITKLEPGVFDRLTQLTRLDLDN 71
Query: 213 NQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQF 263
NQ + F L+ L L L N L S + KSL + L N +
Sbjct: 72 NQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPW 122
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 275 TSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSI-SNLTNLKELALLYN 333
T+ L L N++ P ++ L+ LDL+ NQ VLP + LT L +L+L N
Sbjct: 38 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDN 96
Query: 334 HLSGSIP 340
L SIP
Sbjct: 97 QLK-SIP 102
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 104/244 (42%), Gaps = 11/244 (4%)
Query: 195 IPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGN----SLSSPILSSLGKF 250
+PS I S+ L L++N F + + +L+ LY+ GN L + L L
Sbjct: 292 LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENL 351
Query: 251 KSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQ 310
+ L DL ++ + + NL L L LS NE G + L +LD+
Sbjct: 352 QKL-DLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTH 410
Query: 311 FKGVLPPS-ISNLTNLKELALLYNHLSGSIPPSLGNLI-LRELLLSGNHF--AGYLPYNI 366
P S NL L+ L L + L S L L LR L L GN F N+
Sbjct: 411 LHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNL 470
Query: 367 CQG-GALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDL 425
Q G+LEI +S + + ++ + L+ N+LTG+ +AL+ L ++++
Sbjct: 471 LQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNM 529
Query: 426 SRNN 429
+ NN
Sbjct: 530 ASNN 533
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 100/213 (46%), Gaps = 20/213 (9%)
Query: 300 SLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNL-ILRELLLSGNHF 358
S+ ++L +++F + + T ++EL L HL+G +P + + L++L+L+ N F
Sbjct: 254 SVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSF 312
Query: 359 AGYLPYNICQGGALEIFTVSENHFQGTI------PTSVRNCTSLIRVHLNGNNLTGNISE 412
+CQ A ++ + + +G + + +L ++ L+ +++ +
Sbjct: 313 D-----QLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCC 367
Query: 413 ALAI--YPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPRE-IGNSSQLQ 469
L + +L +++LS N G + +CP+L+ L+V+ ++ P N L+
Sbjct: 368 NLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLR 427
Query: 470 ALDLSLNHIVGEIPKE--LGKLNSLTKLILRGN 500
L+LS H + + + L L L L L+GN
Sbjct: 428 VLNLS--HCLLDTSNQHLLAGLQDLRHLNLQGN 458
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 100/234 (42%), Gaps = 31/234 (13%)
Query: 248 GKFKSLIDLQ---LNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVL 304
G FK+L +L L N+ + P +F L L L LSKN+L +P+++ K +L L
Sbjct: 70 GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEKMPK--TLQEL 126
Query: 305 DLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPY 364
++EN+ V ++N L+ I LG L+ + F G
Sbjct: 127 RVHENEITKVR-------------KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173
Query: 365 NICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFID 424
+ + I T+ QG P SL +HL+GN +T + +L NL +
Sbjct: 174 SYIRIADTNITTIP----QGLPP-------SLTELHLDGNKITKVDAASLKGLNNLAKLG 222
Query: 425 LSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHI 478
LS N+ + + P L L+++ N + +P + + +Q + L N+I
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/234 (25%), Positives = 100/234 (42%), Gaps = 31/234 (13%)
Query: 248 GKFKSLIDLQ---LNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVL 304
G FK+L +L L N+ + P +F L L L LSKN+L +P+++ K +L L
Sbjct: 70 GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEKMPK--TLQEL 126
Query: 305 DLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPY 364
++EN+ V ++N L+ I LG L+ + F G
Sbjct: 127 RVHENEITKVR-------------KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173
Query: 365 NICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFID 424
+ + I T+ QG P SL +HL+GN +T + +L NL +
Sbjct: 174 SYIRIADTNITTIP----QGLPP-------SLTELHLDGNKITKVDAASLKGLNNLAKLG 222
Query: 425 LSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHI 478
LS N+ + + P L L+++ N + +P + + +Q + L N+I
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 133/321 (41%), Gaps = 37/321 (11%)
Query: 170 SVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNL 229
+V ++ + SH+ L I D+L PS+I L+L+ NQ P F S L
Sbjct: 3 TVRYNVADCSHLKLTHIPDDL-----PSNITV------LNLTHNQLRRLPPTNFTRYSQL 51
Query: 230 KSLYLYGNSLS--SPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNEL 287
L NS+S P L + +++LQ NE + ++F T+L+ L L N +
Sbjct: 52 AILDAGFNSISKLEPELCQILPLLKVLNLQHNE--LSQISDQTFVFCTNLTELDLMSNSI 109
Query: 288 FGSIPDEIGKMRSLSVLDLNENQFK------GVLPPSISNLTNLKE--LALLYNHLSGSI 339
+ ++L LDL+ N GV ++ L K LAL L
Sbjct: 110 HKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEF-- 167
Query: 340 PPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNC-----T 394
LGN LR+L LS N + P C ++F + N+ Q + + C T
Sbjct: 168 ---LGNSSLRKLDLSSNPLKEFSPG--CFQTIGKLFALLLNNAQLNPHLTEKLCWELSNT 222
Query: 395 SLIRVHLNGNNLTGNISEALA--IYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMN 452
S+ + L N L + + NLT +DLS NN + + ++ P L L++ N
Sbjct: 223 SIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYN 282
Query: 453 NITGGIPREIGNSSQLQALDL 473
NI PR S L+ L L
Sbjct: 283 NIQRLSPRSFYGLSNLRYLSL 303
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 108/253 (42%), Gaps = 20/253 (7%)
Query: 102 SFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIP----PEVGQLSSM 157
SFS P L YL L + + P LS+L++L + S+ P + S
Sbjct: 267 SFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQ 326
Query: 158 EVFFLCSNYLN---GSVPPSLGN-------LSHISLLFIYDNLFSGFIPSDIGNSKS-IF 206
+ +L YLN ++P + N L ++SL + +L + + + + S +
Sbjct: 327 WLKYL--EYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLL 384
Query: 207 NLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGK-FKSLIDLQLNENQFTG 265
L+L+ N S F L L+ L L N + + + +++ ++ L+ N++
Sbjct: 385 TLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQ 444
Query: 266 YIPRSFGNLTSLSTLRLSKNEL--FGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLT 323
SF + SL L L + L P +R+L++LDL+ N + + L
Sbjct: 445 LSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLE 504
Query: 324 NLKELALLYNHLS 336
NL+ L +N+L+
Sbjct: 505 NLEILDFQHNNLA 517
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 95/241 (39%), Gaps = 17/241 (7%)
Query: 204 SIFNLDLSSNQFSGPIPLFFGNL--SNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNEN 261
SI NL L++NQ F L +NL L L N+L S SL L L N
Sbjct: 223 SIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYN 282
Query: 262 QFTGYIPRSFGNLTSLSTLRLSKNELFGSIP-------DEIG--KMRSLSVLDLNENQFK 312
PRSF L++L L L + S+ D+ ++ L L++++N
Sbjct: 283 NIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIP 342
Query: 313 GVLPPSISNLTNLKELAL-----LYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNIC 367
+ + L +LK L+L L+ SL + L L L+ NH +
Sbjct: 343 STKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFS 402
Query: 368 QGGALEIFTVSENHFQGTIP-TSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLS 426
G L I + N + + R ++ ++L+ N + + A+ P+L + L
Sbjct: 403 WLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLR 462
Query: 427 R 427
R
Sbjct: 463 R 463
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 78/199 (39%), Gaps = 4/199 (2%)
Query: 98 LHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSM 157
L +SF SFP L LDL+ + LSHL L + N + LSS+
Sbjct: 45 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 104
Query: 158 EVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGF-IPSDIGNSKSIFNLDLSSNQFS 216
+ L +G+L + L + NL F +P N ++ +LDLSSN+
Sbjct: 105 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
Query: 217 GPIPLFFGNLSNLKSLYLYGNSLSSPI-LSSLGKFKS--LIDLQLNENQFTGYIPRSFGN 273
L + L L + +P+ G FK L +L L+ NQ F
Sbjct: 165 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDR 224
Query: 274 LTSLSTLRLSKNELFGSIP 292
LTSL + L N S P
Sbjct: 225 LTSLQKIWLHTNPWDCSCP 243
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 208 LDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYI 267
LDLS + + +LS+L +L L GN + S L + SL L E
Sbjct: 59 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 118
Query: 268 PRSFGNLTSLSTLRLSKNELFG-SIPDEIGKMRSLSVLDLNENQFKGV 314
G+L +L L ++ N + +P+ + +L LDL+ N+ + +
Sbjct: 119 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 78/199 (39%), Gaps = 4/199 (2%)
Query: 98 LHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSM 157
L +SF SFP L LDL+ + LSHL L + N + LSS+
Sbjct: 44 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 103
Query: 158 EVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGF-IPSDIGNSKSIFNLDLSSNQFS 216
+ L +G+L + L + NL F +P N ++ +LDLSSN+
Sbjct: 104 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 163
Query: 217 GPIPLFFGNLSNLKSLYLYGNSLSSPI-LSSLGKFKS--LIDLQLNENQFTGYIPRSFGN 273
L + L L + +P+ G FK L +L L+ NQ F
Sbjct: 164 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDR 223
Query: 274 LTSLSTLRLSKNELFGSIP 292
LTSL + L N S P
Sbjct: 224 LTSLQKIWLHTNPWDCSCP 242
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 208 LDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYI 267
LDLS + + +LS+L +L L GN + S L + SL L E
Sbjct: 58 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 117
Query: 268 PRSFGNLTSLSTLRLSKNELFG-SIPDEIGKMRSLSVLDLNENQFKGV 314
G+L +L L ++ N + +P+ + +L LDL+ N+ + +
Sbjct: 118 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 97/224 (43%), Gaps = 35/224 (15%)
Query: 100 GFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEV 159
FS P L +LDL+ +GL G S F G+ + LS V
Sbjct: 340 AFSEVDLPSLEFLDLSRNGL-----SFKGCCSQSDF---------GTTSLKYLDLSFNGV 385
Query: 160 FFLCSNYLNGSVPPSLGNLSHISLLFIYDNL-----FSGFIPSDIGNSKSIFNLDLSSNQ 214
+ SN+L L L H+ F + NL FS F+ + +++ LD+S
Sbjct: 386 ITMSSNFL------GLEQLEHLD--FQHSNLKQMSEFSVFL-----SLRNLIYLDISHTH 432
Query: 215 FSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSL-GKFKSLIDLQLNENQFTGYIPRSFGN 273
F LS+L+ L + GNS L + + ++L L L++ Q P +F +
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 274 LTSLSTLRLSKNELFGSIPDEI-GKMRSLSVLDLNENQFKGVLP 316
L+SL L ++ N+L S+PD I ++ SL + L+ N + P
Sbjct: 493 LSSLQVLNMASNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 76/149 (51%), Gaps = 11/149 (7%)
Query: 197 SDIGNSKSIFNLDLSSNQFSGPIPL---FFGNLSNLKSL-YLYGNSLSSPILSSLGKFKS 252
SD G + S+ LDLS F+G I + F G L L+ L + + N S ++
Sbjct: 368 SDFGTT-SLKYLDLS---FNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRN 422
Query: 253 LIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGS-IPDEIGKMRSLSVLDLNENQF 311
LI L ++ F L+SL L+++ N + +PD ++R+L+ LDL++ Q
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482
Query: 312 KGVLPPSISNLTNLKELALLYNHLSGSIP 340
+ + P + ++L++L+ L + N L S+P
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLK-SVP 510
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 98 LHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSM 157
L +SF SFP L LDL+ + LSHL L + N + LSS+
Sbjct: 43 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102
Query: 158 EVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGF-IPSDIGNSKSIFNLDLSSNQ 214
+ L +G+L + L + NL F +P N ++ +LDLSSN+
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 70/173 (40%), Gaps = 23/173 (13%)
Query: 109 LAYLDLTGSGLFGTIPPEVGL--LSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSN- 165
L YLDL+ +G+ +GL L HL F + Q+S VF N
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQH-----------SNLKQMSEFSVFLSLRNL 423
Query: 166 -YLNGSVPPS-------LGNLSHISLLFIYDNLFS-GFIPSDIGNSKSIFNLDLSSNQFS 216
YL+ S + LS + +L + N F F+P +++ LDLS Q
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
Query: 217 GPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPR 269
P F +LS+L+ L + N L S + SL + L+ N + PR
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 208 LDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYI 267
LDLS + + +LS+L +L L GN + S L + SL L E
Sbjct: 57 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116
Query: 268 PRSFGNLTSLSTLRLSKNELFG-SIPDEIGKMRSLSVLDLNENQFKGV 314
G+L +L L ++ N + +P+ + +L LDL+ N+ + +
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%)
Query: 256 LQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVL 315
L L +N+ T P F LT L+ L L N+L K+ L+ L LN+NQ K +
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
Query: 316 PPSISNLTNLKELALLYN 333
+ NL +L + LL N
Sbjct: 95 RGAFDNLRSLTHIWLLNN 112
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 43/111 (38%), Gaps = 2/111 (1%)
Query: 153 QLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSS 212
Q S CS SVP + + + L++YDN + P + LDL +
Sbjct: 6 QCSCSGTTVDCSGKSLASVPTGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDLDN 63
Query: 213 NQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQF 263
NQ + F L+ L L L N L S + +SL + L N +
Sbjct: 64 NQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTHIWLLNNPW 114
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 4/109 (3%)
Query: 195 IPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLI 254
+P+ I + + L L N+ + P F L+ L L L N L+ K L
Sbjct: 24 VPTGIPTTTQV--LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLT 81
Query: 255 DLQLNENQFTGYIPR-SFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLS 302
L LN+NQ IPR +F NL SL+ + L N + D + R +S
Sbjct: 82 QLSLNDNQLKS-IPRGAFDNLRSLTHIWLLNNPWDCACSDILYLSRWIS 129
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 232 LYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSI 291
LYLY N ++ + L L L+ NQ T F LT L+ L L+ N+L SI
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL-KSI 93
Query: 292 PD-EIGKMRSLSVLDLNENQF 311
P +RSL+ + L N +
Sbjct: 94 PRGAFDNLRSLTHIWLLNNPW 114
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 275 TSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSI-SNLTNLKELALLYN 333
T+ L L N + P ++ L+ LDL+ NQ VLP + LT L +L+L N
Sbjct: 30 TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDN 88
Query: 334 HLSGSIP 340
L SIP
Sbjct: 89 QLK-SIP 94
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 91/239 (38%), Gaps = 5/239 (2%)
Query: 58 TKATTNVSSKISPCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGS 117
+ N++ + +Y I N N+ L L L +SF SFP L LDL+
Sbjct: 5 VEVVPNITYQCEELNFYKIPDNLPFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRC 63
Query: 118 GLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGN 177
+ LSHL L + N + LSS++ L +G+
Sbjct: 64 EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 123
Query: 178 LSHISLLFIYDNLFSGF-IPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYG 236
L + L + NL F +P N ++ +LDLSSN+ L + L L
Sbjct: 124 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 183
Query: 237 NSLSSPI-LSSLGKFKS--LIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIP 292
+ +P+ G FK L +L L+ NQ F LTSL + L N S P
Sbjct: 184 DLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 242
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 208 LDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYI 267
LDLS + + +LS+L +L L GN + S L + SL L E
Sbjct: 58 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 117
Query: 268 PRSFGNLTSLSTLRLSKNELFG-SIPDEIGKMRSLSVLDLNENQFKGV 314
G+L +L L ++ N + +P+ + +L LDL+ N+ + +
Sbjct: 118 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 78/199 (39%), Gaps = 4/199 (2%)
Query: 98 LHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSM 157
L +SF SFP L LDL+ + LSHL L + N + LSS+
Sbjct: 43 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102
Query: 158 EVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGF-IPSDIGNSKSIFNLDLSSNQFS 216
+ L +G+L + L + NL F +P N ++ +LDLSSN+
Sbjct: 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Query: 217 GPIPLFFGNLSNLKSLYLYGNSLSSPI-LSSLGKFKS--LIDLQLNENQFTGYIPRSFGN 273
L + L L + +P+ G FK L +L L+ NQ F
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDR 222
Query: 274 LTSLSTLRLSKNELFGSIP 292
LTSL + L N S P
Sbjct: 223 LTSLQKIWLHTNPWDCSCP 241
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 208 LDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYI 267
LDLS + + +LS+L +L L GN + S L + SL L E
Sbjct: 57 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116
Query: 268 PRSFGNLTSLSTLRLSKNELFG-SIPDEIGKMRSLSVLDLNENQFKGV 314
G+L +L L ++ N + +P+ + +L LDL+ N+ + +
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 78/199 (39%), Gaps = 4/199 (2%)
Query: 98 LHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSM 157
L +SF SFP L LDL+ + LSHL L + N + LSS+
Sbjct: 45 LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 104
Query: 158 EVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGF-IPSDIGNSKSIFNLDLSSNQFS 216
+ L +G+L + L + NL F +P N ++ +LDLSSN+
Sbjct: 105 QKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 164
Query: 217 GPIPLFFGNLSNLKSLYLYGNSLSSPI-LSSLGKFKS--LIDLQLNENQFTGYIPRSFGN 273
L + L L + +P+ G FK L +L L+ NQ F
Sbjct: 165 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDR 224
Query: 274 LTSLSTLRLSKNELFGSIP 292
LTSL + L N S P
Sbjct: 225 LTSLQKIWLHTNPWDCSCP 243
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 208 LDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYI 267
LDLS + + +LS+L +L L GN + S L + SL L E
Sbjct: 59 LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLE 118
Query: 268 PRSFGNLTSLSTLRLSKNELFG-SIPDEIGKMRSLSVLDLNENQFKGV 314
G+L +L L ++ N + +P+ + +L LDL+ N+ + +
Sbjct: 119 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 387 PTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDT 446
PT + N SL+ H N+L SEA PNL ++DLS N+ + + L+
Sbjct: 60 PTRLTNLHSLLLSH---NHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV 116
Query: 447 LNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKL-NSLTKLIL 497
L + N+I + +QLQ L LS N I P EL K N L KL+L
Sbjct: 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI-SRFPVELIKDGNKLPKLML 167
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 59/137 (43%), Gaps = 15/137 (10%)
Query: 302 SVLDLNEN---QFKGVLPPSISNLTNLKELALLYNHL----SGSIPPSLGNLILRELLLS 354
++LDL+ N + + P+ LTNL L L +NHL S + P LR L LS
Sbjct: 42 ALLDLSHNNLSRLRAEWTPT--RLTNLHSLLLSHNHLNFISSEAFVPVPN---LRYLDLS 96
Query: 355 GNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEAL 414
NH + ALE+ + NH + + L +++L+ N ++ E +
Sbjct: 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156
Query: 415 A---IYPNLTFIDLSRN 428
P L +DLS N
Sbjct: 157 KDGNKLPKLMLLDLSSN 173
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 208 LDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGY- 266
LDLSSN F +L L+ L LY N + ++ L L L++NQ + +
Sbjct: 93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP 152
Query: 267 --IPRSFGNLTSLSTLRLSKNEL 287
+ + L L L LS N+L
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKL 175
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 85/188 (45%), Gaps = 6/188 (3%)
Query: 223 FGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRL 282
F +L +L+ L L NS+ + + SL L+L +N T +F L+ L L L
Sbjct: 95 FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154
Query: 283 SKNELFGSIPD-EIGKMRSLSVLDLNE-NQFKGVLPPSISNLTNLKELALLYNHLSGSIP 340
N + SIP ++ SL LDL E + + + + L NLK L L ++
Sbjct: 155 RNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-- 211
Query: 341 PSLGNLI-LRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRV 399
P+L L+ L EL +SGNHF P + +L+ V + + SL+ +
Sbjct: 212 PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271
Query: 400 HLNGNNLT 407
+L NNL+
Sbjct: 272 NLAHNNLS 279
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%)
Query: 208 LDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYI 267
L++S N F P F LS+LK L++ + +S ++ SL++L L N +
Sbjct: 223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP 282
Query: 268 PRSFGNLTSLSTLRLSKN 285
F L L L L N
Sbjct: 283 HDLFTPLRYLVELHLHHN 300
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 87/211 (41%), Gaps = 30/211 (14%)
Query: 86 NISLRNTGLSGT--LHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKL 143
N++++N +SGT +H S +LD + + L T+ G L+ L+ L + N+L
Sbjct: 301 NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360
Query: 144 D--GSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGN 201
I Q+ S++ + N ++ YD D
Sbjct: 361 KELSKIAEMTTQMKSLQQLDISQNSVS------------------YDEK-----KGDCSW 397
Query: 202 SKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNEN 261
+KS+ +L++SSN + I F +K L L+ N + S I + K ++L +L + N
Sbjct: 398 TKSLLSLNMSSNILTDTI--FRCLPPRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASN 454
Query: 262 QFTGYIPRSFGNLTSLSTLRLSKNELFGSIP 292
Q F LTSL + L N S P
Sbjct: 455 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
Score = 35.4 bits (80), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 6/156 (3%)
Query: 188 DNLFSGFIPSDIGNSKSIFNLDLSSNQFS--GPIPLFFGNLSNLKSLYLYGNSLS-SPIL 244
+NL + + + G+ + L L NQ I + +L+ L + NS+S
Sbjct: 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK 392
Query: 245 SSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVL 304
KSL+ L ++ N T I R + L L N++ SIP ++ K+ +L L
Sbjct: 393 GDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI-KSIPKQVVKLEALQEL 449
Query: 305 DLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIP 340
++ NQ K V LT+L+++ L N S P
Sbjct: 450 NVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 16/189 (8%)
Query: 223 FGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRL 282
F N+ N+K+ + G + + S K + L + N T + + G+LT L TL L
Sbjct: 299 FSNM-NIKNFTVSGTRMVHMLCPS--KISPFLHLDFSNNLLTDTVFENCGHLTELETLIL 355
Query: 283 SKNEL--FGSIPDEIGKMRSLSVLDLNEN-----QFKGVLPPSISNLTNLKELALLYNHL 335
N+L I + +M+SL LD+++N + KG + S L+ +L + +
Sbjct: 356 QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI 415
Query: 336 SGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTS 395
+PP ++ L L N +P + + AL+ V+ N + TS
Sbjct: 416 FRCLPPR-----IKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTS 469
Query: 396 LIRVHLNGN 404
L ++ L+ N
Sbjct: 470 LQKIWLHTN 478
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 9/120 (7%)
Query: 388 TSVRNC---TSLIRVHLNGNNLT--GNISEALAIYPNLTFIDLSRNNF-YGEISSNWGKC 441
T NC T L + L N L I+E +L +D+S+N+ Y E +
Sbjct: 339 TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398
Query: 442 PKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
L +LN+S N +T I R + +++ LDL N I IPK++ KL +L +L + NQ
Sbjct: 399 KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQ 455
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 98/215 (45%), Gaps = 23/215 (10%)
Query: 96 GTLHGFS----FSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEV 151
G H S S+ L YL +T S + P + L+ L L ++ N+++ P +
Sbjct: 140 GANHNLSDLSPLSNXTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--L 195
Query: 152 GQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLS 211
L+S+ F N + P + N + ++ L I +N + P + N + L++
Sbjct: 196 ASLTSLHYFTAYVNQITDITP--VANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIG 251
Query: 212 SNQFSGPIPLFFGNLSNLKSLYLYGNSLSS-PILSSLGKFKSLIDLQLNENQFTGYIPRS 270
+NQ S + +L+ LK L + N +S +L++L + SL LN NQ
Sbjct: 252 TNQISDINAV--KDLTKLKXLNVGSNQISDISVLNNLSQLNSLF---LNNNQLGNEDXEV 306
Query: 271 FGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLD 305
G LT+L+TL LS+N + +I + SLS D
Sbjct: 307 IGGLTNLTTLFLSQNHIT-----DIRPLASLSKXD 336
Score = 36.2 bits (82), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 102/264 (38%), Gaps = 52/264 (19%)
Query: 208 LDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYI 267
L+L+ NQ + PL NL L +LY+ N ++ +S+L +L +L LNE+ +
Sbjct: 71 LNLNGNQITDISPL--SNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDIS 126
Query: 268 PRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKE 327
P NLT +L L N + + L+ L + E++ K V P I+NLT+L
Sbjct: 127 P--LANLTKXYSLNLGANHNLSDLS-PLSNXTGLNYLTVTESKVKDVTP--IANLTDLYS 181
Query: 328 LALLYNHLSG---------------------SIPPSLGNLILRELLLSGNHFAGYLPY-N 365
L+L YN + I P L L + N P N
Sbjct: 182 LSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSLKIGNNKITDLSPLAN 241
Query: 366 ICQGGALEIFT-------------------VSENHFQGTIPTSVRNCTSLIRVHLNGNNL 406
+ Q LEI T V N + + N + L + LN N L
Sbjct: 242 LSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQISDI--SVLNNLSQLNSLFLNNNQL 299
Query: 407 TGNISEALAIYPNLTFIDLSRNNF 430
E + NLT + LS+N+
Sbjct: 300 GNEDXEVIGGLTNLTTLFLSQNHI 323
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 82/184 (44%), Gaps = 12/184 (6%)
Query: 133 LKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFS 192
L +L + +K+ P + L+ + L N + P L +L+ + Y N +
Sbjct: 157 LNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT 212
Query: 193 GFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKS 252
P + N + +L + +N+ + PL NLS L L + N +S ++++
Sbjct: 213 DITP--VANXTRLNSLKIGNNKITDLSPL--ANLSQLTWLEIGTNQISD--INAVKDLTK 266
Query: 253 LIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFK 312
L L + NQ + NL+ L++L L+ N+L + IG + +L+ L L++N
Sbjct: 267 LKXLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHIT 324
Query: 313 GVLP 316
+ P
Sbjct: 325 DIRP 328
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 58/131 (44%), Gaps = 14/131 (10%)
Query: 213 NQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFG 272
NQ + P+ N + L SL + N ++ LS L L L++ NQ + +
Sbjct: 209 NQITDITPV--ANXTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISDI--NAVK 262
Query: 273 NLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLD---LNENQFKGVLPPSISNLTNLKELA 329
+LT L L + N++ +I + +LS L+ LN NQ I LTNL L
Sbjct: 263 DLTKLKXLNVGSNQI-----SDISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLF 317
Query: 330 LLYNHLSGSIP 340
L NH++ P
Sbjct: 318 LSQNHITDIRP 328
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 15/137 (10%)
Query: 372 LEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFY 431
L+IF +S N F+ L R++LNGN+LT + + NL +DLS N
Sbjct: 234 LQIFNISANIFKYDF---------LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL- 282
Query: 432 GEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNS 491
+ + G C +L +N+ +P E GN LQ L + N + + K L + S
Sbjct: 283 TSLPAELGSCFQLKYFYF-FDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE-KS 340
Query: 492 LTKLI--LRGNQRAVTL 506
+T LI LR N+ + L
Sbjct: 341 VTGLIFYLRDNRPEIPL 357
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 28/136 (20%)
Query: 112 LDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSV 171
LDL+ +F I + L L+++ N L +P E+ LS++ V L N L S+
Sbjct: 229 LDLSNLQIFN-ISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLT-SL 285
Query: 172 PPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKS 231
P LG+ + + +DN+ + +P FGNL NL+
Sbjct: 286 PAELGSCFQLKYFYFFDNMVTT-------------------------LPWEFGNLCNLQF 320
Query: 232 LYLYGNSLSSPILSSL 247
L + GN L L L
Sbjct: 321 LGVEGNPLEKQFLKIL 336
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 279 TLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGS 338
L LS ++F +I I K L+ L LN N LP I NL+NL+ L L +N L+ S
Sbjct: 228 ALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLT-S 284
Query: 339 IPPSLGNLILRELLLSGNHFAGYLPY---NIC 367
+P LG+ + ++ LP+ N+C
Sbjct: 285 LPAELGSCFQLKYFYFFDNMVTTLPWEFGNLC 316
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 126/306 (41%), Gaps = 30/306 (9%)
Query: 97 TLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSS 156
TL+ F+SFP L L+L + + P L +L+ L + +N+L +L
Sbjct: 46 TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL---------KLIP 96
Query: 157 MEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFS 216
+ VF SN + ++S ++ + D +F D+ N KS L++ N
Sbjct: 97 LGVFTGLSNL-------TKLDISENKIVILLDYMF-----QDLYNLKS---LEVGDNDLV 141
Query: 217 GPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTS 276
F L++L+ L L +L+S +L LI L+L SF L
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201
Query: 277 LSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLS 336
L L +S ++ +L+ L + V ++ +L L+ L L YN +S
Sbjct: 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261
Query: 337 GSIPPSLGNLILR--ELLLSGNHFAGYLPYNICQGGALEIFTVSENH---FQGTIPTSVR 391
+I S+ + +LR E+ L G A PY L + VS N + ++ SV
Sbjct: 262 -TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320
Query: 392 NCTSLI 397
N +LI
Sbjct: 321 NLETLI 326
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 75/185 (40%), Gaps = 3/185 (1%)
Query: 148 PPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFN 207
PP + S+ + LC +VP G + LL + N + + +
Sbjct: 4 PPRC-ECSAQDRAVLCHRKRFVAVPE--GIPTETRLLDLGKNRIKTLNQDEFASFPHLEE 60
Query: 208 LDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYI 267
L+L+ N S P F NL NL++L L N L L +L L ++EN+ +
Sbjct: 61 LELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL 120
Query: 268 PRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKE 327
F +L +L +L + N+L + SL L L + + ++S+L L
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV 180
Query: 328 LALLY 332
L L +
Sbjct: 181 LRLRH 185
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 9/178 (5%)
Query: 166 YLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSG--PIPLFF 223
+++ PPS S + L N+F+ + K + L L N + L
Sbjct: 343 FIHMVCPPSP---SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT 399
Query: 224 GNLSNLKSLYLYGNSLSSPILSSLGKF-KSLIDLQLNENQFTGYIPRSFGNLTSLSTLRL 282
N+S+L++L + NSL+S + +S++ L L+ N TG + R + L L
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDL 457
Query: 283 SKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIP 340
N + SIP ++ +++L L++ NQ K V LT+L+ + L N + P
Sbjct: 458 HNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 14/141 (9%)
Query: 104 SSFPRLAYLDLTGSGL--FGTIPPEVGLLSHLKFLFIDTNKLDG-SIPPEVGQLSSMEVF 160
S+ RL L L +GL F + +S L+ L + N L+ + S+ V
Sbjct: 374 STLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVL 433
Query: 161 FLCSNYLNGSV----PPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFS 216
L SN L GSV PP + +L +++N IP D+ + +++ L+++SNQ
Sbjct: 434 NLSSNMLTGSVFRCLPPK------VKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLK 486
Query: 217 GPIPLFFGNLSNLKSLYLYGN 237
F L++L+ ++L+ N
Sbjct: 487 SVPDGVFDRLTSLQYIWLHDN 507
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 446 TLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501
LN+S N +TG + R + +++ LDL N I+ IPK++ L +L +L + NQ
Sbjct: 432 VLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQ 484
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 90/223 (40%), Gaps = 59/223 (26%)
Query: 120 FGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLN---GSVPPSLG 176
F +IP GL + +K L + NK+ ++ ++++V L S+ +N G SLG
Sbjct: 43 FTSIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG 100
Query: 177 NLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYG 236
+L H LDLS N S +FG LS+LK L L G
Sbjct: 101 SLEH---------------------------LDLSDNHLSSLSSSWFGPLSSLKYLNLMG 133
Query: 237 NSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPD-EI 295
N + ++SL F NLT+L TLR+ E F I +
Sbjct: 134 NPYQTLGVTSL-----------------------FPNLTNLQTLRIGNVETFSEIRRIDF 170
Query: 296 GKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGS 338
+ SL+ L++ + S+ ++ ++ L L HLS S
Sbjct: 171 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL---HLSES 210
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 140/328 (42%), Gaps = 60/328 (18%)
Query: 165 NYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNL---DLSSNQFSGPIPL 221
NY + S+ S+ ++ H++L + ++ F I +DI +S L +L+ QFS P+P+
Sbjct: 188 NYQSQSLK-SIRDIHHLTL-HLSESAFLLEIFADILSSVRYLELRDTNLARFQFS-PLPV 244
Query: 222 FFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLR 281
+ S +K L G+ L+ + L K I L+L+E +F G+
Sbjct: 245 DEVS-SPMKKLAFRGSVLTDESFNELLKLLRYI-LELSEVEFDDCTLNGLGDF------- 295
Query: 282 LSKNELFGSIPDEIGKMRSLSVLDLNENQFKGV--LPPSISNLTNLKELALLYNHLSGSI 339
N + E+GK+ ++++ L+ QF L S L +K + + N +
Sbjct: 296 ---NPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV-ENSKVFLV 351
Query: 340 PPSLGNLI--LRELLLSGN-HFAGYLPYNICQGG--ALEIFTVSENHFQGTIPTSVRNCT 394
P S + L L LS N YL + C+G +L+ +S+NH + T
Sbjct: 352 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG----- 406
Query: 395 SLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFY-GEISSNWGKCPKLDTLNVS--- 450
E L NLT +D+SRN F+ S W + K+ LN+S
Sbjct: 407 -----------------EILLTLKNLTSLDISRNTFHPMPDSCQWPE--KMRFLNLSSTG 447
Query: 451 MNNITGGIPREIGNSSQLQALDLSLNHI 478
+ + IP+ L+ LD+S N++
Sbjct: 448 IRVVKTCIPQ------TLEVLDVSNNNL 469
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 90/223 (40%), Gaps = 59/223 (26%)
Query: 120 FGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLN---GSVPPSLG 176
F +IP GL + +K L + NK+ ++ ++++V L S+ +N G SLG
Sbjct: 17 FTSIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG 74
Query: 177 NLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYG 236
+L H LDLS N S +FG LS+LK L L G
Sbjct: 75 SLEH---------------------------LDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107
Query: 237 NSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPD-EI 295
N + ++SL F NLT+L TLR+ E F I +
Sbjct: 108 NPYQTLGVTSL-----------------------FPNLTNLQTLRIGNVETFSEIRRIDF 144
Query: 296 GKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGS 338
+ SL+ L++ + S+ ++ ++ L L HLS S
Sbjct: 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL---HLSES 184
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 140/328 (42%), Gaps = 60/328 (18%)
Query: 165 NYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNL---DLSSNQFSGPIPL 221
NY + S+ S+ ++ H++L + ++ F I +DI +S L +L+ QFS P+P+
Sbjct: 162 NYQSQSLK-SIRDIHHLTL-HLSESAFLLEIFADILSSVRYLELRDTNLARFQFS-PLPV 218
Query: 222 FFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLR 281
+ S +K L G+ L+ + L K I L+L+E +F G+
Sbjct: 219 DEVS-SPMKKLAFRGSVLTDESFNELLKLLRYI-LELSEVEFDDCTLNGLGDF------- 269
Query: 282 LSKNELFGSIPDEIGKMRSLSVLDLNENQFKGV--LPPSISNLTNLKELALLYNHLSGSI 339
N + E+GK+ ++++ L+ QF L S L +K + + N +
Sbjct: 270 ---NPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV-ENSKVFLV 325
Query: 340 PPSLGNLI--LRELLLSGN-HFAGYLPYNICQGG--ALEIFTVSENHFQGTIPTSVRNCT 394
P S + L L LS N YL + C+G +L+ +S+NH + T
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG----- 380
Query: 395 SLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFY-GEISSNWGKCPKLDTLNVS--- 450
E L NLT +D+SRN F+ S W + K+ LN+S
Sbjct: 381 -----------------EILLTLKNLTSLDISRNTFHPMPDSCQWPE--KMRFLNLSSTG 421
Query: 451 MNNITGGIPREIGNSSQLQALDLSLNHI 478
+ + IP+ L+ LD+S N++
Sbjct: 422 IRVVKTCIPQ------TLEVLDVSNNNL 443
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 100/239 (41%), Gaps = 14/239 (5%)
Query: 195 IPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNS----LSSPILSSLGKF 250
+PS + ++ L LS+N+F + N +L L + GN+ L + L +L
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352
Query: 251 KSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQ 310
+ L DL ++ + + NL+ L +L LS NE + + L +LDL +
Sbjct: 353 REL-DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411
Query: 311 FKGVLPPS-ISNLTNLKELALLYNHLSGSIPPSLGNL-ILRELLLSGNHF--AGYLPYNI 366
K S NL LK L L ++ L S L L+ L L GNHF N
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNS 471
Query: 367 CQG-GALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALA----IYPNL 420
Q G LEI +S + + + V L+ N LT + EAL+ IY NL
Sbjct: 472 LQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYLNL 530
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 107/451 (23%), Positives = 182/451 (40%), Gaps = 83/451 (18%)
Query: 97 TLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSS 156
T+ +FS L +LDLT ++ F ++LD + L++
Sbjct: 47 TIQNTTFSRLINLTFLDLTRCQIYWIHEDT----------FQSQHRLDTLV------LTA 90
Query: 157 MEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFS-GFIPSDIGNSKSIFNLDLSSNQF 215
+ F+ L+G P +L +L FI + S FIP + N K++ +L L SN
Sbjct: 91 NPLIFMAETALSG--PKALKHL-----FFIQTGISSIDFIP--LHNQKTLESLYLGSNHI 141
Query: 216 SG-PIPLFFGNLSNLKSLYLYGNS---LSSPILSSLGKFKSLIDLQLNENQFTGYIPRSF 271
S +P F LK L N+ LS +SSL + +L L LN N G P +F
Sbjct: 142 SSIKLPKGFPT-EKLKVLDFQNNAIHYLSKEDMSSLQQATNL-SLNLNGNDIAGIEPGAF 199
Query: 272 -----------GNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSIS 320
G L + KN S+ +G + D++ F+G+ S+
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSL--WLGTFEDMDDEDISPAVFEGLCEMSVE 257
Query: 321 NL------------------TNLKELALLYNHLSGSIPPSLGNL-ILRELLLSGNHFAGY 361
++ + L+EL L HLS +P L L L++L+LS N F
Sbjct: 258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFE-- 314
Query: 362 LPYNICQGGALEIFTVSENHFQGTIPT------SVRNCTSLIRVHLNGNNLTGNISEALA 415
N+CQ A +++ +G + N +L + L+ +++ + L
Sbjct: 315 ---NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371
Query: 416 I--YPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNI-TGGIPREIGNSSQLQALD 472
+ +L ++LS N + + +CP+L+ L+++ + N L+ L+
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431
Query: 473 LSLNHIVGEIPKE--LGKLNSLTKLILRGNQ 501
LS H + +I E L +L L L+GN
Sbjct: 432 LS--HSLLDISSEQLFDGLPALQHLNLQGNH 460
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 77/316 (24%), Positives = 126/316 (39%), Gaps = 45/316 (14%)
Query: 72 AWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLS 131
A C+ RV+ S + GL S P LDL + + + L
Sbjct: 25 AMCPFGCHCHLRVVQCS--DLGLKAVPKEIS----PDTTLLDLQNNDISELRKDDFKGLQ 78
Query: 132 HLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLF 191
HL L + NK+ L ++ ++ N+L +PP+L S + L I+DN
Sbjct: 79 HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL-VEIPPNLP--SSLVELRIHDNRI 135
Query: 192 SGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFK 251
+P + FSG L N+ + + GN L + G F
Sbjct: 136 RK-VPKGV---------------FSG--------LRNMNCIEMGGNPLENSGFEP-GAFD 170
Query: 252 SLI--DLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNEN 309
L L+++E + TG IP+ +L+ L L N++ +++ + L L L N
Sbjct: 171 GLKLNYLRISEAKLTG-IPKDLPE--TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN 227
Query: 310 QFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNL-ILRELLLSGNHFAGYLPYNICQ 368
Q + + S+S L L+EL L N LS +P L +L +L+ + L N+ + C
Sbjct: 228 QIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCP 286
Query: 369 GGALEIFTVSENHFQG 384
G F V ++ G
Sbjct: 287 VG----FGVKRAYYNG 298
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%)
Query: 210 LSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPR 269
L+SN+ F L +LK+L L N ++ S S+ L L +NQ T P
Sbjct: 88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147
Query: 270 SFGNLTSLSTLRLSKN 285
+F L SLSTL L N
Sbjct: 148 AFDTLHSLSTLNLLAN 163
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 44/104 (42%)
Query: 208 LDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYI 267
++ S+N+ + F S + + L N L + +SL L L N+ T
Sbjct: 62 INFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVG 121
Query: 268 PRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQF 311
SF L+S+ L L N++ P + SLS L+L N F
Sbjct: 122 NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 46/113 (40%)
Query: 103 FSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFL 162
F P+L ++ + + + S + + + +N+L+ L S++ L
Sbjct: 53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112
Query: 163 CSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQF 215
SN + S LS + LL +YDN + P S+ L+L +N F
Sbjct: 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165
>pdb|3ND1|A Chain A, Crystal Structure Of Precorrin-6a Synthase From
Rhodobacter Capsulatus
pdb|3ND1|B Chain B, Crystal Structure Of Precorrin-6a Synthase From
Rhodobacter Capsulatus
Length = 275
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 46 LQSRNQSRLPSWTKATTNVSSKISPCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSS 105
+ R +SRLP TK +++ + CA + I ND G + I+ TG HG+ +
Sbjct: 144 IAERLKSRLPLTTKVIPGITAIQALCAAHAIPLNDIGAPVVIT---TGRQLRDHGWPAGT 200
Query: 106 FPRLAYLDLTGSGLFGTIPPE 126
+A LD G F ++PP+
Sbjct: 201 ETVVAMLD--GECSFQSLPPD 219
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%)
Query: 256 LQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVL 315
L L NQ T P F +LT L+ L L+ N+L K+ L+ L L+ NQ K +
Sbjct: 45 LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIP 104
Query: 316 PPSISNLTNLKELALLYN 333
NL +L + L N
Sbjct: 105 MGVFDNLKSLTHIYLFNN 122
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 195 IPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLI 254
+P+ I + + +L + NQ + P F +L+ L L L N L++ + K L
Sbjct: 34 VPAGIPTTTQVLHLYI--NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLT 91
Query: 255 DLQLNENQFTGYIPRSFGNLTSLSTLRLSKN 285
L L+ NQ F NL SL+ + L N
Sbjct: 92 HLALHINQLKSIPMGVFDNLKSLTHIYLFNN 122
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 256 LQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVL 315
L L+ENQ SF +L L L+LS+N + + +L+ L+L +N+ +
Sbjct: 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP 128
Query: 316 PPSISNLTNLKELALLYNHLSGSIP-------PSLGNLILREL 351
+ L+ LKEL L N + SIP PSL L L EL
Sbjct: 129 NGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGEL 170
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
Query: 252 SLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSI--PDEIGKMRSLSVLDLNEN 309
SLI L+L+ NQF +F L +L L L++ L G++ + + SL +L L +N
Sbjct: 80 SLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139
Query: 310 QFKGVLPPSIS-NLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFA 359
K + P S N+ L L +N + L N G HF
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN-------FQGKHFT 183
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 277 LSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLS 336
+ T LSK+++F + L L L +N+ + + LT+LKELAL N L
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLK 336
Query: 337 GSIPPSLGNLI--LRELLLSGNHFAGYLP 363
S+P + + + L+++ L N + P
Sbjct: 337 -SVPDGIFDRLTSLQKIWLHTNPWDCSCP 364
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 204 SIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQL----N 259
S+ +LDLS N S +F LS+L L L GN + L F L LQ+ N
Sbjct: 75 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT--LGETSLFSHLTKLQILRVGN 132
Query: 260 ENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQ 310
+ FT + F LT L L + ++L P + ++++S L L+ Q
Sbjct: 133 MDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 183
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 79/184 (42%), Gaps = 5/184 (2%)
Query: 338 SIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLI 397
SIP L + + L LS N ++ + L+ ++ N S + SL
Sbjct: 19 SIPSGLTEAV-KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 77
Query: 398 RVHLNGNNLTGNISEALAIYPNLTFIDLSRNNF--YGEISSNWGKCPKLDTLNV-SMNNI 454
+ L+ N L+ S +LTF++L N + GE +S + KL L V +M+
Sbjct: 78 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMDTF 136
Query: 455 TGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINKVCS 514
T ++ + L+ L++ + + PK L + +++ LIL Q + L V S
Sbjct: 137 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS 196
Query: 515 SLEA 518
S+E
Sbjct: 197 SVEC 200
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 9/67 (13%)
Query: 400 HLNGNNLTGNISEALAIYPNLTFIDLSRNNFYG-EISSNWGKCPKLDTLNVS---MNNIT 455
HL TG E L NLT ID+S+N+F+ + W + K+ LN+S ++++T
Sbjct: 372 HLASLEKTG---ETLLTLKNLTNIDISKNSFHSMPETCQWPE--KMKYLNLSSTRIHSVT 426
Query: 456 GGIPREI 462
G IP+ +
Sbjct: 427 GCIPKTL 433
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 195 IPSDI-GNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSL 253
IP+++ + +++ +L+L +N P LF +L NL+S+ N L GK L
Sbjct: 138 IPANLLTDMRNLSHLELRANIEEMPSHLF-DDLENLESIEFGSNKLRQMPRGIFGKMPKL 196
Query: 254 IDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIP 292
L L NQ F LTSL + L N S P
Sbjct: 197 KQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 235
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 252 SLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQF 311
S ++L+ N + ++ F +L +L ++ N+L GKM L L+L NQ
Sbjct: 150 SHLELRANIEEMPSHL---FDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQL 206
Query: 312 KGVLPPSISNLTNLKELALLYNHLSGSIP 340
K V LT+L+++ L N S P
Sbjct: 207 KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 235
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 4/96 (4%)
Query: 174 SLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLY 233
+ NLSH+ L + + S D+ N +SI + SN+ FG + LK L
Sbjct: 145 DMRNLSHLELRANIEEMPSHLF-DDLENLESI---EFGSNKLRQMPRGIFGKMPKLKQLN 200
Query: 234 LYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPR 269
L N L S + SL + L+ N + PR
Sbjct: 201 LASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 236
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 64/152 (42%), Gaps = 9/152 (5%)
Query: 169 GSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSN 228
S+ LG +S +L+F DNL + + ++ + + ++ N
Sbjct: 89 ASILDYLGIVSPTTLIFESDNLGMNITRQHLDRLHGLKRFRFTTRRLTHIPANLLTDMRN 148
Query: 229 LKSLYLYGN--SLSSPILSSLGKFKSLIDLQLNENQFTGYIPRS-FGNLTSLSTLRLSKN 285
L L L N + S + L +S+ + N+ +PR FG + L L L+ N
Sbjct: 149 LSHLELRANIEEMPSHLFDDLENLESI---EFGSNKLR-QMPRGIFGKMPKLKQLNLASN 204
Query: 286 ELFGSIPDEI-GKMRSLSVLDLNENQFKGVLP 316
+L S+PD I ++ SL + L+ N + P
Sbjct: 205 QL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 235
>pdb|3IRP|X Chain X, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus At 1.50 Angstrom Resolution
pdb|3IRZ|A Chain A, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus In P212121 Form
pdb|3IS0|X Chain X, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus In The Presence Of
Cholesterol
Length = 429
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 232 LYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSI 291
++ YGN + P++S + L + +FT YI ++ + S +RLS +
Sbjct: 150 IFNYGNR-TVPVISDINY------LTKDFAEFTTYINQNRA-FNTGSKVRLSGQGFKFTS 201
Query: 292 PDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNL 346
PDEI + L N +QF+ P +NLT ++ ++ N GS LG++
Sbjct: 202 PDEIEVYKVL-----NNSQFRDSFSPDYANLTQVRNPKIIINS-DGSATVDLGDI 250
>pdb|3IS1|X Chain X, Crystal Structure Of Functional Region Of Uafa From
Staphylococcus Saprophyticus In C2 Form At 2.45 Angstrom
Resolution
Length = 446
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 14/115 (12%)
Query: 232 LYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSI 291
++ YGN + P++S + L + +FT YI ++ + S +RLS +
Sbjct: 167 IFNYGNR-TVPVISDINY------LTKDFAEFTTYINQNRA-FNTGSKVRLSGQGFKFTS 218
Query: 292 PDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNL 346
PDEI + L N +QF+ P +NLT ++ ++ N GS LG++
Sbjct: 219 PDEIEVYKVL-----NNSQFRDSFSPDYANLTQVRNPKIIINS-DGSATVDLGDI 267
>pdb|3KQ5|A Chain A, Crystal Structure Of An Uncharacterized Protein From
Coxiella Burnetii
Length = 393
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 244 LSSLGKFKSLIDLQLN--ENQFTGYIPRSFGN---LTSLSTLRLSKNELFGSIPDEIGK 297
L G FK IDL +N N FT Y + FGN LT LS + +LF PD + +
Sbjct: 280 LEKTGIFKQYIDLHVNVPVNLFTVY--QQFGNLFGLTKLSGIDYRFEQLFSEYPDALKR 336
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 113/270 (41%), Gaps = 14/270 (5%)
Query: 195 IPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLI 254
+P D+ + ++ NL + NQ F S L SL + N++S K L
Sbjct: 29 VPDDLPTNITVLNL--THNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 86
Query: 255 DLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGV 314
L L N+ + ++F T+L+ L L N + + K ++L LDL+ N
Sbjct: 87 VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 146
Query: 315 LPPSISNLTNLKELALLYNHLSGSIPPSL---GNLILRELLLSGNHFAGYLPYNICQGGA 371
+ L NL+EL L N + L N L++L LS N + P C
Sbjct: 147 KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG--CFHAI 204
Query: 372 LEIFTVSENHFQGTIPTSVRNC-----TSLIRVHLNGNNL--TGNISEALAIYPNLTFID 424
+F + N+ Q + + C TS+ + L+ + L T N + + NLT +D
Sbjct: 205 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 264
Query: 425 LSRNNFYGEISSNWGKCPKLDTLNVSMNNI 454
LS NN + ++ P+L+ + NNI
Sbjct: 265 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 294
>pdb|3MJ6|A Chain A, Crystal Structure Of The Gammadelta T Cell Costimulatory
Receptor Junctional Adhesion Molecule-Like Protein, Jaml
pdb|3MJ7|A Chain A, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
pdb|3MJ9|A Chain A, Crystal Structure Of Jaml In Complex With The Stimulatory
Antibody Hl4e10
Length = 268
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 53/97 (54%), Gaps = 11/97 (11%)
Query: 224 GNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLS 283
G+ + +++ Y +++ S SLG+F++ +DL TG I R+ G++ L T++ S
Sbjct: 160 GSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDL-------TGDISRNDGSI-KLQTVKES 211
Query: 284 KNELFGSIPDEIGKMRSLS--VLDLNENQFKGVLPPS 318
++ + +GK+ S VL + +++F+ + P+
Sbjct: 212 DQGIY-TCSIYVGKLESRKTIVLHVVQDEFQRTISPT 247
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 113/270 (41%), Gaps = 14/270 (5%)
Query: 195 IPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLI 254
+P D+ + ++ NL + NQ F S L SL + N++S K L
Sbjct: 24 VPDDLPTNITVLNL--THNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 81
Query: 255 DLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGV 314
L L N+ + ++F T+L+ L L N + + K ++L LDL+ N
Sbjct: 82 VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 141
Query: 315 LPPSISNLTNLKELALLYNHLSGSIPPSL---GNLILRELLLSGNHFAGYLPYNICQGGA 371
+ L NL+EL L N + L N L++L LS N + P C
Sbjct: 142 KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG--CFHAI 199
Query: 372 LEIFTVSENHFQGTIPTSVRNC-----TSLIRVHLNGNNL--TGNISEALAIYPNLTFID 424
+F + N+ Q + + C TS+ + L+ + L T N + + NLT +D
Sbjct: 200 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 259
Query: 425 LSRNNFYGEISSNWGKCPKLDTLNVSMNNI 454
LS NN + ++ P+L+ + NNI
Sbjct: 260 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 289
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 113/270 (41%), Gaps = 14/270 (5%)
Query: 195 IPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLI 254
+P D+ + ++ NL + NQ F S L SL + N++S K L
Sbjct: 19 VPDDLPTNITVLNL--THNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK 76
Query: 255 DLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGV 314
L L N+ + ++F T+L+ L L N + + K ++L LDL+ N
Sbjct: 77 VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136
Query: 315 LPPSISNLTNLKELALLYNHLSGSIPPSL---GNLILRELLLSGNHFAGYLPYNICQGGA 371
+ L NL+EL L N + L N L++L LS N + P C
Sbjct: 137 KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG--CFHAI 194
Query: 372 LEIFTVSENHFQGTIPTSVRNC-----TSLIRVHLNGNNL--TGNISEALAIYPNLTFID 424
+F + N+ Q + + C TS+ + L+ + L T N + + NLT +D
Sbjct: 195 GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254
Query: 425 LSRNNFYGEISSNWGKCPKLDTLNVSMNNI 454
LS NN + ++ P+L+ + NNI
Sbjct: 255 LSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 235 YGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNEL 287
Y N + P+ +SL K K L L+ NQ G +P +FG+ L++L L+ N++
Sbjct: 314 YNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLP-AFGSEIKLASLNLAYNQI 365
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 412 EALAIYPNLTFIDLSRNNFYGEISSNWGKCP-KLDTL------NVSMNNITGGIPREIGN 464
E + ++P L+ +DLS N GE CP K TL N M +G
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226
Query: 465 SSQLQALDLSLNHI 478
QLQ LDLS N +
Sbjct: 227 RVQLQGLDLSHNSL 240
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 79/184 (42%), Gaps = 5/184 (2%)
Query: 338 SIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLI 397
SIP L + + L LS N ++ + L+ ++ N S + SL
Sbjct: 45 SIPSGLTEAV-KSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103
Query: 398 RVHLNGNNLTGNISEALAIYPNLTFIDLSRNNF--YGEISSNWGKCPKLDTLNV-SMNNI 454
+ L+ N L+ S +LTF++L N + GE +S + KL L V +M+
Sbjct: 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE-TSLFSHLTKLQILRVGNMDTF 162
Query: 455 TGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINKVCS 514
T ++ + L+ L++ + + PK L + +++ LIL Q + L V S
Sbjct: 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTS 222
Query: 515 SLEA 518
S+E
Sbjct: 223 SVEC 226
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 116/273 (42%), Gaps = 66/273 (24%)
Query: 179 SHISLLFIYDNLFSGF--IPSDIGNSKSIFNLDLSSNQ----------------FSGPIP 220
+HI+ L I DN + +P ++ L++S NQ FS P+
Sbjct: 61 AHITTLVIPDNNLTSLPALPPELRT------LEVSGNQLTSLPVLPPGLLELSIFSNPLT 114
Query: 221 LFFGNLSNLKSLYLYGNSLSS-PILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLST 279
S L L+++GN L+S P+L L +L +++NQ +P L L
Sbjct: 115 HLPALPSGLCKLWIFGNQLTSLPVLP-----PGLQELSVSDNQLAS-LPALPSELCKL-- 166
Query: 280 LRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGV--LPPSISNL--------------T 323
+ N S+P ++ LSV D NQ + LP + L +
Sbjct: 167 --WAYNNQLTSLPMLPSGLQELSVSD---NQLASLPTLPSELYKLWAYNNRLTSLPALPS 221
Query: 324 NLKELALLYNHLSGSIP--PSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENH 381
LKEL + N L+ S+P PS L+EL++SGN LP + G L + +V N
Sbjct: 222 GLKELIVSGNRLT-SLPVLPS----ELKELMVSGNRLTS-LP--MLPSGLLSL-SVYRNQ 272
Query: 382 FQGTIPTSVRNCTSLIRVHLNGNNLTGNISEAL 414
+P S+ + +S V+L GN L+ +AL
Sbjct: 273 LT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 304
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 187 YDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSS 246
YD+LF I D G KS L + N FSG G ++++ + G + I +
Sbjct: 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDT 65
Query: 247 LG--KFKSL 253
G +F+++
Sbjct: 66 AGQERFRTI 74
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 208 LDLSSNQFSGPIPL-FFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGY 266
LD+S N+ + +PL L L+ LYL GN L + L L L L NQ T
Sbjct: 105 LDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
Query: 267 IPRSFGNLTSLSTLRLSKNELFGSIP 292
L +L TL L +N L+ +IP
Sbjct: 164 PAGLLNGLENLDTLLLQENSLY-TIP 188
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 208 LDLSSNQFSGPIPL-FFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGY 266
LD+S N+ + +PL L L+ LYL GN L + L L L L NQ T
Sbjct: 105 LDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
Query: 267 IPRSFGNLTSLSTLRLSKNELFGSIP 292
L +L TL L +N L+ +IP
Sbjct: 164 PAGLLNGLENLDTLLLQENSLY-TIP 188
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 208 LDLSSNQFSGPIPL-FFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGY 266
LD+S N+ + +PL L L+ LYL GN L + L L L L NQ T
Sbjct: 105 LDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
Query: 267 IPRSFGNLTSLSTLRLSKNELFGSIP 292
L +L TL L +N L+ +IP
Sbjct: 164 PAGLLNGLENLDTLLLQENSLY-TIP 188
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 79/336 (23%), Positives = 129/336 (38%), Gaps = 50/336 (14%)
Query: 221 LFFG----NLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTS 276
++FG L+N K + +++ + L F+ + L LN+ Q +F +
Sbjct: 35 VYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHT 94
Query: 277 LSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLS 336
+ L + N + P + L+VL L N + N L L++ N+L
Sbjct: 95 IQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 154
Query: 337 G------SIPPSLGNLILR-------ELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQ 383
SL NL L +L L + F + YN+ A+ I +
Sbjct: 155 RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASH 214
Query: 384 GTI-----PTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNW 438
+I P +V L + L NNLT + L YP L +DLS N + +
Sbjct: 215 NSINVVRGPVNV----ELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF 268
Query: 439 GKCPKLDTLNVSMNNITG----GIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTK 494
K +L+ L +S N + G P L+ LDLS NH++ + + + + L
Sbjct: 269 VKMQRLERLYISNNRLVALNLYGQP-----IPTLKVLDLSHNHLL-HVERNQPQFDRLEN 322
Query: 495 LILRGNQ------------RAVTLSFINKVCSSLEA 518
L L N + +TLS + C+SL A
Sbjct: 323 LYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRA 358
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 208 LDLSSNQFSGPIPL-FFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGY 266
LD+S N+ + +PL L L+ LYL GN L + L L L L NQ T
Sbjct: 105 LDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTEL 163
Query: 267 IPRSFGNLTSLSTLRLSKNELFGSIP 292
L +L TL L +N L+ +IP
Sbjct: 164 PAGLLNGLENLDTLLLQENSLY-TIP 188
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 26/91 (28%)
Query: 420 LTFIDLSRNNFYG----------------EISSNWGKCPKLDTLNVSMNNITG--GIPRE 461
LTF+D+S N F G EI S P L+ LNVS N + +P
Sbjct: 279 LTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALP-- 336
Query: 462 IGNSSQLQALDLSLNHI--VGEIPKELGKLN 490
+L+ L S NH+ V E+P+ L +L+
Sbjct: 337 ----PRLERLIASFNHLAEVPELPQNLKQLH 363
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,181,478
Number of Sequences: 62578
Number of extensions: 592541
Number of successful extensions: 2278
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 1528
Number of HSP's gapped (non-prelim): 418
length of query: 518
length of database: 14,973,337
effective HSP length: 103
effective length of query: 415
effective length of database: 8,527,803
effective search space: 3539038245
effective search space used: 3539038245
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)