Query 037558
Match_columns 518
No_of_seqs 408 out of 4453
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 13:29:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037558.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037558hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.2E-59 2.5E-64 524.0 38.4 477 32-517 27-550 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.1E-52 2.5E-57 467.9 29.9 432 82-517 118-574 (968)
3 KOG4194 Membrane glycoprotein 100.0 4E-39 8.7E-44 308.6 6.5 367 108-476 79-449 (873)
4 KOG4194 Membrane glycoprotein 100.0 3.6E-38 7.9E-43 302.1 7.1 369 132-502 79-451 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 9.2E-39 2E-43 293.6 -15.2 404 83-503 69-541 (565)
6 KOG0444 Cytoskeletal regulator 100.0 5.1E-36 1.1E-40 289.4 -5.0 383 83-498 8-394 (1255)
7 KOG0472 Leucine-rich repeat pr 100.0 1.5E-36 3.2E-41 279.1 -13.7 382 83-479 92-541 (565)
8 KOG0444 Cytoskeletal regulator 100.0 1.1E-34 2.3E-39 280.4 -4.6 339 81-429 31-373 (1255)
9 KOG0618 Serine/threonine phosp 100.0 1.2E-32 2.5E-37 277.8 -4.8 398 83-502 46-488 (1081)
10 KOG0618 Serine/threonine phosp 100.0 5.3E-32 1.1E-36 273.1 -9.0 399 83-503 22-465 (1081)
11 PLN03210 Resistant to P. syrin 99.9 5.7E-25 1.2E-29 246.1 27.3 338 124-476 551-903 (1153)
12 PLN03210 Resistant to P. syrin 99.9 9.5E-25 2.1E-29 244.3 28.2 357 83-454 533-905 (1153)
13 KOG4237 Extracellular matrix p 99.9 9.8E-25 2.1E-29 201.2 -4.7 273 83-358 68-358 (498)
14 PRK15387 E3 ubiquitin-protein 99.9 3.9E-21 8.4E-26 200.7 16.7 264 180-486 202-465 (788)
15 PRK15387 E3 ubiquitin-protein 99.8 2.1E-20 4.5E-25 195.3 17.0 264 156-462 202-465 (788)
16 KOG4237 Extracellular matrix p 99.8 3.3E-23 7.2E-28 191.2 -5.0 276 108-383 68-359 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 2.3E-19 5.1E-24 188.6 17.3 247 131-407 178-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 5.2E-19 1.1E-23 186.0 11.7 139 156-312 179-317 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 1.1E-19 2.4E-24 177.4 1.2 273 207-502 2-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.8 1.6E-19 3.5E-24 176.2 1.5 277 183-478 2-319 (319)
21 KOG0617 Ras suppressor protein 99.7 1.8E-18 3.9E-23 142.2 -5.0 164 103-296 29-193 (264)
22 KOG0617 Ras suppressor protein 99.6 3E-18 6.4E-23 140.9 -4.8 160 156-321 34-194 (264)
23 PLN03150 hypothetical protein; 99.6 2E-14 4.2E-19 151.0 13.3 147 30-189 368-525 (623)
24 KOG1909 Ran GTPase-activating 99.2 4.3E-13 9.3E-18 123.2 -2.7 198 295-502 88-310 (382)
25 COG4886 Leucine-rich repeat (L 99.2 3.6E-11 7.9E-16 120.8 7.5 198 135-341 97-295 (394)
26 KOG1259 Nischarin, modulator o 99.2 4.4E-12 9.6E-17 114.1 0.8 134 367-506 281-415 (490)
27 PLN03150 hypothetical protein; 99.2 6.8E-11 1.5E-15 124.4 8.9 113 395-507 419-532 (623)
28 KOG0532 Leucine-rich repeat (L 99.1 1.3E-12 2.9E-17 127.0 -4.4 196 105-310 73-271 (722)
29 KOG4658 Apoptotic ATPase [Sign 99.1 3.5E-11 7.5E-16 129.3 5.3 104 108-212 546-651 (889)
30 KOG1909 Ran GTPase-activating 99.1 3.3E-12 7.2E-17 117.4 -2.4 136 200-335 154-310 (382)
31 COG4886 Leucine-rich repeat (L 99.1 7.6E-11 1.6E-15 118.5 7.0 200 111-319 97-297 (394)
32 KOG0532 Leucine-rich repeat (L 99.1 3.2E-12 7E-17 124.4 -3.3 189 207-404 79-270 (722)
33 KOG3207 Beta-tubulin folding c 99.1 7.9E-12 1.7E-16 118.1 -1.2 208 128-336 118-339 (505)
34 KOG3207 Beta-tubulin folding c 99.0 3.5E-11 7.7E-16 113.8 0.6 159 248-407 118-284 (505)
35 PF14580 LRR_9: Leucine-rich r 99.0 1.3E-10 2.8E-15 100.4 3.9 100 393-496 41-146 (175)
36 KOG1259 Nischarin, modulator o 99.0 6.4E-11 1.4E-15 106.7 1.8 132 271-431 280-412 (490)
37 KOG4658 Apoptotic ATPase [Sign 99.0 4.5E-10 9.8E-15 120.8 6.0 83 175-258 567-649 (889)
38 PF14580 LRR_9: Leucine-rich r 99.0 3.6E-10 7.9E-15 97.6 4.1 124 347-475 20-149 (175)
39 KOG0531 Protein phosphatase 1, 98.8 4.4E-10 9.4E-15 113.2 -1.3 196 105-312 70-268 (414)
40 PF13855 LRR_8: Leucine rich r 98.8 4.2E-09 9.2E-14 74.7 3.4 40 437-476 20-59 (61)
41 PF13855 LRR_8: Leucine rich r 98.8 3.5E-09 7.7E-14 75.1 2.9 61 442-502 1-61 (61)
42 KOG0531 Protein phosphatase 1, 98.8 8.1E-10 1.8E-14 111.3 -1.5 265 204-482 50-321 (414)
43 PF08263 LRRNT_2: Leucine rich 98.6 7.1E-08 1.5E-12 62.5 4.4 42 33-79 2-43 (43)
44 KOG2982 Uncharacterized conser 98.5 3.3E-08 7E-13 89.5 1.6 82 417-498 198-287 (418)
45 COG5238 RNA1 Ran GTPase-activa 98.5 2.1E-08 4.6E-13 89.5 -1.0 183 153-336 90-316 (388)
46 KOG1859 Leucine-rich repeat pr 98.3 1.7E-08 3.7E-13 101.6 -5.7 180 292-479 102-292 (1096)
47 COG5238 RNA1 Ran GTPase-activa 98.3 7.6E-08 1.6E-12 86.0 -1.1 246 248-503 27-316 (388)
48 KOG2120 SCF ubiquitin ligase, 98.3 1.7E-08 3.7E-13 91.3 -5.4 176 299-476 185-373 (419)
49 KOG1859 Leucine-rich repeat pr 98.3 8.7E-09 1.9E-13 103.6 -8.2 156 102-263 104-291 (1096)
50 KOG2120 SCF ubiquitin ligase, 98.3 1.3E-08 2.8E-13 92.0 -6.8 178 252-452 186-373 (419)
51 KOG2982 Uncharacterized conser 98.2 1.8E-07 4E-12 84.7 -0.1 86 250-335 70-158 (418)
52 KOG4579 Leucine-rich repeat (L 98.1 1.2E-07 2.5E-12 76.0 -3.4 84 394-479 53-136 (177)
53 KOG4579 Leucine-rich repeat (L 98.1 2.3E-07 4.9E-12 74.4 -3.1 135 348-486 29-166 (177)
54 PF12799 LRR_4: Leucine Rich r 97.8 1.9E-05 4.2E-10 51.2 3.5 36 443-479 2-37 (44)
55 PF12799 LRR_4: Leucine Rich r 97.8 1.9E-05 4.2E-10 51.2 2.8 36 132-168 2-37 (44)
56 PRK15386 type III secretion pr 97.7 0.00011 2.4E-09 71.8 8.5 136 295-452 48-187 (426)
57 KOG1644 U2-associated snRNP A' 97.7 8E-05 1.7E-09 64.2 6.3 104 371-476 43-150 (233)
58 KOG4341 F-box protein containi 97.7 1E-06 2.2E-11 83.7 -6.0 136 368-503 292-439 (483)
59 PRK15386 type III secretion pr 97.6 0.00019 4E-09 70.2 8.4 130 346-500 52-187 (426)
60 KOG3665 ZYG-1-like serine/thre 97.6 2.8E-05 6.2E-10 82.2 2.9 136 346-483 122-267 (699)
61 KOG3665 ZYG-1-like serine/thre 97.6 2.3E-05 5E-10 82.9 1.1 34 177-212 171-204 (699)
62 KOG1644 U2-associated snRNP A' 97.5 0.00022 4.7E-09 61.6 5.7 82 133-216 44-126 (233)
63 PF13306 LRR_5: Leucine rich r 97.5 0.00044 9.5E-09 57.2 7.3 105 366-475 8-112 (129)
64 PF13306 LRR_5: Leucine rich r 97.4 0.00062 1.4E-08 56.3 8.1 106 102-212 7-112 (129)
65 KOG2739 Leucine-rich acidic nu 97.3 8.2E-05 1.8E-09 66.9 0.9 103 391-497 40-150 (260)
66 KOG2739 Leucine-rich acidic nu 97.1 0.00024 5.2E-09 64.0 2.0 61 105-167 41-103 (260)
67 KOG4341 F-box protein containi 97.1 2.5E-05 5.4E-10 74.5 -4.9 297 180-497 139-459 (483)
68 KOG2123 Uncharacterized conser 97.0 3.5E-05 7.5E-10 69.6 -4.7 100 393-496 18-123 (388)
69 KOG1947 Leucine rich repeat pr 96.4 0.00027 5.9E-09 73.1 -3.3 110 225-334 186-306 (482)
70 KOG1947 Leucine rich repeat pr 96.2 0.00045 9.8E-09 71.4 -3.5 110 106-215 187-307 (482)
71 KOG2123 Uncharacterized conser 96.1 0.00023 5.1E-09 64.4 -5.0 63 249-313 39-102 (388)
72 PF00560 LRR_1: Leucine Rich R 96.1 0.0024 5.1E-08 34.3 0.8 21 491-512 1-21 (22)
73 PF00560 LRR_1: Leucine Rich R 95.0 0.0098 2.1E-07 31.9 0.6 12 157-168 2-13 (22)
74 KOG4308 LRR-containing protein 93.9 0.00029 6.2E-09 71.5 -12.4 181 300-480 88-304 (478)
75 KOG4308 LRR-containing protein 93.2 0.00067 1.4E-08 68.8 -11.3 203 276-478 88-330 (478)
76 PF13504 LRR_7: Leucine rich r 91.6 0.14 3.1E-06 25.4 1.6 10 444-453 3-12 (17)
77 KOG3864 Uncharacterized conser 91.1 0.023 5.1E-07 49.4 -2.6 83 394-476 101-186 (221)
78 KOG0473 Leucine-rich repeat pr 90.0 0.0047 1E-07 54.7 -7.8 85 392-479 40-124 (326)
79 KOG3864 Uncharacterized conser 87.6 0.089 1.9E-06 45.9 -1.6 82 371-452 102-186 (221)
80 PF13516 LRR_6: Leucine Rich r 85.6 0.16 3.4E-06 27.8 -0.8 15 466-480 2-16 (24)
81 KOG0473 Leucine-rich repeat pr 85.2 0.015 3.2E-07 51.7 -7.7 87 366-455 38-124 (326)
82 smart00370 LRR Leucine-rich re 80.5 1.5 3.2E-05 24.3 1.9 13 419-431 3-15 (26)
83 smart00369 LRR_TYP Leucine-ric 80.5 1.5 3.2E-05 24.3 1.9 13 419-431 3-15 (26)
84 KOG4242 Predicted myosin-I-bin 76.4 11 0.00025 37.6 7.6 58 420-477 415-479 (553)
85 KOG3763 mRNA export factor TAP 61.4 3.8 8.2E-05 41.7 1.0 36 393-428 217-254 (585)
86 KOG3763 mRNA export factor TAP 60.4 3.7 8.1E-05 41.7 0.8 62 370-431 218-283 (585)
87 smart00364 LRR_BAC Leucine-ric 60.0 6.9 0.00015 21.9 1.4 13 132-144 3-15 (26)
88 smart00365 LRR_SD22 Leucine-ri 58.8 9.4 0.0002 21.3 1.9 12 156-167 3-14 (26)
89 smart00368 LRR_RI Leucine rich 58.7 8.1 0.00017 21.9 1.7 14 490-503 2-15 (28)
90 smart00367 LRR_CC Leucine-rich 48.9 13 0.00028 20.5 1.4 14 489-502 1-14 (26)
91 KOG4242 Predicted myosin-I-bin 41.2 43 0.00093 33.8 4.6 199 298-499 164-389 (553)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-59 Score=523.97 Aligned_cols=477 Identities=35% Similarity=0.586 Sum_probs=300.0
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCCCCcCCCCCCCCCCCCCccCceeeCCCCCEEEEEcCCCCCccccCCccCCCCCCCcE
Q 037558 32 PNEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAY 111 (518)
Q Consensus 32 ~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~c~w~g~~c~~~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~ 111 (518)
.++|++||++||+.+.+ +.+.+.+|+.. .+||.|.|++|+..++|+.|+++++++.|.++. .+..+++|++
T Consensus 27 ~~~~~~~l~~~~~~~~~-~~~~~~~w~~~-------~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~ 97 (968)
T PLN00113 27 HAEELELLLSFKSSIND-PLKYLSNWNSS-------ADVCLWQGITCNNSSRVVSIDLSGKNISGKISS-AIFRLPYIQT 97 (968)
T ss_pred CHHHHHHHHHHHHhCCC-CcccCCCCCCC-------CCCCcCcceecCCCCcEEEEEecCCCccccCCh-HHhCCCCCCE
Confidence 55899999999999964 66677899765 689999999998878999999999999988876 7889999999
Q ss_pred EeCCCCCCcccCCcccc-CCCCCCEEECCCCCCCcCCC----------------------ccCCCCCCCcEEEccCCCCC
Q 037558 112 LDLTGSGLFGTIPPEVG-LLSHLKFLFIDTNKLDGSIP----------------------PEVGQLSSMEVFFLCSNYLN 168 (518)
Q Consensus 112 L~L~~~~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~p----------------------~~l~~l~~L~~L~L~~n~~~ 168 (518)
|+|++|.+.+.+|..+. .+++|++|++++|.+++.+| ..++++++|++|++++|.+.
T Consensus 98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~ 177 (968)
T PLN00113 98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV 177 (968)
T ss_pred EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc
Confidence 99999998888876654 67777777777776665444 33444444444444444444
Q ss_pred ccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCcccccccc
Q 037558 169 GSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLG 248 (518)
Q Consensus 169 ~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~ 248 (518)
+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++.+++|++|++++|.+.+..|..++
T Consensus 178 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 257 (968)
T PLN00113 178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG 257 (968)
T ss_pred ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh
Confidence 44444444444444444444444444444444444555555555544444444445555555555555555444455555
Q ss_pred CCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCee
Q 037558 249 KFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKEL 328 (518)
Q Consensus 249 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 328 (518)
++++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|+.|
T Consensus 258 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 337 (968)
T PLN00113 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL 337 (968)
T ss_pred CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEE
Confidence 55555555555555554455555555555555555555555555555555555555555555555555555555555555
Q ss_pred ecccccccccCCccccc-ccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccc
Q 037558 329 ALLYNHLSGSIPPSLGN-LILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLT 407 (518)
Q Consensus 329 ~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 407 (518)
++++|.+.+.+|..+.. .+|+.|++++|.+.+.+|..++..++++.+++++|.+.+.+|..+..+++|+.|++++|+++
T Consensus 338 ~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~ 417 (968)
T PLN00113 338 QLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417 (968)
T ss_pred ECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEee
Confidence 55555555555544433 45555666555555555555555455555555555555455555555555555555555555
Q ss_pred cccChhhhCCCCCCEEecccCccccccCccccC-----------------------CCCCCEEEccCCccccCccccccC
Q 037558 408 GNISEALAIYPNLTFIDLSRNNFYGEISSNWGK-----------------------CPKLDTLNVSMNNITGGIPREIGN 464 (518)
Q Consensus 408 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~-----------------------~~~L~~L~ls~n~l~~~~~~~~~~ 464 (518)
+.+|..+..+++|+.|++++|.+.+.++..+.. .++|+.|++++|++.+.+|..+..
T Consensus 418 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~ 497 (968)
T PLN00113 418 GELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGS 497 (968)
T ss_pred eECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhh
Confidence 555555555555555555555444433332222 345666666667776777777777
Q ss_pred CCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCccccccCccCccCCCCC
Q 037558 465 SSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINKVCSSLE 517 (518)
Q Consensus 465 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip~~l~~l~~L~ 517 (518)
+++|+.|++++|++.+.+|..+..+++|++|++++|.+.+.+|..+.++++|+
T Consensus 498 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 550 (968)
T PLN00113 498 LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLS 550 (968)
T ss_pred hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCC
Confidence 88888888888888888888888888888888888888888888888777775
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-52 Score=467.88 Aligned_cols=432 Identities=34% Similarity=0.536 Sum_probs=267.6
Q ss_pred CCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEE
Q 037558 82 GRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF 161 (518)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 161 (518)
.+++.++++++.+.|.+|. ..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..++++++|++|+
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 194 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT 194 (968)
T ss_pred CCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeee
Confidence 4677888888877776653 3466777777777777767777777777777777777777666777777777777777
Q ss_pred ccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCc
Q 037558 162 LCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSS 241 (518)
Q Consensus 162 L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 241 (518)
+++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++.+++|++|++++|.+.+
T Consensus 195 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274 (968)
T ss_pred ccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence 77777766667777777777777777777766666667777777777777777666666666666677777776666666
Q ss_pred cccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcC
Q 037558 242 PILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISN 321 (518)
Q Consensus 242 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 321 (518)
..|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..++.
T Consensus 275 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 354 (968)
T PLN00113 275 PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354 (968)
T ss_pred cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666555555555
Q ss_pred CCCCCeeecccccccccCCccccc-------------------------ccCcEEEccCccCcccCchhhcCCCCccEEe
Q 037558 322 LTNLKELALLYNHLSGSIPPSLGN-------------------------LILRELLLSGNHFAGYLPYNICQGGALEIFT 376 (518)
Q Consensus 322 l~~L~~L~l~~n~l~~~~p~~~~~-------------------------~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 376 (518)
+++|+.|++++|.+++.+|..+.. ++|+.|++++|.+.+.+|..+..+++|+.++
T Consensus 355 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 434 (968)
T PLN00113 355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD 434 (968)
T ss_pred CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEE
Confidence 566666666665555544443322 3444444444444444444444444444444
Q ss_pred cCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCcccc
Q 037558 377 VSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITG 456 (518)
Q Consensus 377 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~ 456 (518)
+++|.+.+.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|++.+..|..+..+++|+.|++++|.+.+
T Consensus 435 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 513 (968)
T PLN00113 435 ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG 513 (968)
T ss_pred CcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCccee
Confidence 44444444444444444444444444444433333322 22445555555555555555555566666666666666666
Q ss_pred CccccccCCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCccccccCccCccCCCCC
Q 037558 457 GIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINKVCSSLE 517 (518)
Q Consensus 457 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip~~l~~l~~L~ 517 (518)
.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+.++++|+
T Consensus 514 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 574 (968)
T PLN00113 514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLV 574 (968)
T ss_pred eCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccC
Confidence 6666666666666666666666666666666666666666666666666666655555543
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=4e-39 Score=308.65 Aligned_cols=367 Identities=23% Similarity=0.225 Sum_probs=312.4
Q ss_pred CCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEcc
Q 037558 108 RLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIY 187 (518)
Q Consensus 108 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~ 187 (518)
.-+.|++++|++...-+..|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.|...-.+.++.++.|+.|||+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 6678999999999888889999999999999999998 899888888889999999999987666778889999999999
Q ss_pred CccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCC
Q 037558 188 DNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYI 267 (518)
Q Consensus 188 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 267 (518)
.|.++..--..|..-.++++|+|++|.++......|.++.+|.+|.++.|+++...+..|.++++|+.|++..|++...-
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 99999776677888889999999999999888888999999999999999999977788888999999999999988554
Q ss_pred cccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCccccc-c
Q 037558 268 PRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGN-L 346 (518)
Q Consensus 268 ~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-~ 346 (518)
--.|.++++|+.|.+..|.+...-...|..+.++++|+++.|++......++.++..|+.|++++|.+...-+..+.. .
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq 317 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ 317 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence 567889999999999999988666677888999999999999998777778889999999999999998777777766 7
Q ss_pred cCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccC---hhhhCCCCCCEE
Q 037558 347 ILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNIS---EALAIYPNLTFI 423 (518)
Q Consensus 347 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L 423 (518)
+|+.|+++.|.+....+..+..+..|++|.++.|.++..--..|..+++|++|+|++|.+...+. ..|.++++|+.|
T Consensus 318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 88888888888888888888888888888888888875555566778888888888888876554 456678888888
Q ss_pred ecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCC
Q 037558 424 DLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLN 476 (518)
Q Consensus 424 ~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n 476 (518)
++.+|++.......|.++++|++|||.+|.|...-|.+|..+ .|++|-++.-
T Consensus 398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSS 449 (873)
T ss_pred eecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhccc
Confidence 888888876666677888888888888888887777788777 7777766543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.6e-38 Score=302.12 Aligned_cols=369 Identities=23% Similarity=0.214 Sum_probs=320.6
Q ss_pred CCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcc
Q 037558 132 HLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLS 211 (518)
Q Consensus 132 ~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 211 (518)
.-+.|++++|.+...-+..|.++++|+++++.+|.++ .+|.......+|+.|+|.+|.|+..-.+.+..++.|+.|||+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence 4577999999999888888999999999999999998 788877777889999999999998888889999999999999
Q ss_pred cCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccC
Q 037558 212 SNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSI 291 (518)
Q Consensus 212 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 291 (518)
.|.++..-...|..-.++++|++++|.|+......|..+.+|..|.++.|+++...+..|..+++|+.|++..|++.-.-
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 99998666667777788999999999999988889999999999999999999766677888999999999999987333
Q ss_pred ccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCccccc-ccCcEEEccCccCcccCchhhcCCC
Q 037558 292 PDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGN-LILRELLLSGNHFAGYLPYNICQGG 370 (518)
Q Consensus 292 p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~ 370 (518)
--.|.++++|+.|.+..|.+.......|..+.++++|+|..|+++..-..++.. +.|+.|+++.|.|...-+..+.-++
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq 317 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ 317 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence 456888999999999999998777778889999999999999988655555544 8899999999999988888888889
Q ss_pred CccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccC---ccccCCCCCCEE
Q 037558 371 ALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEIS---SNWGKCPKLDTL 447 (518)
Q Consensus 371 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~~~~L~~L 447 (518)
+|++|+++.|+++...+..|..+..|++|.|+.|.++..-..+|..+.+|++|||++|.++..+. ..|.++++|+.|
T Consensus 318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 99999999999997778888889999999999999987777888899999999999999886653 346778999999
Q ss_pred EccCCccccCccccccCCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCcc
Q 037558 448 NVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQR 502 (518)
Q Consensus 448 ~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 502 (518)
++.+|++......+|..++.|+.|||.+|.+-.+-|.+|..+ .|++|-+..-+|
T Consensus 398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf 451 (873)
T KOG4194|consen 398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF 451 (873)
T ss_pred eecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence 999999986556788999999999999999998889999888 888887654443
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=9.2e-39 Score=293.61 Aligned_cols=404 Identities=28% Similarity=0.389 Sum_probs=285.8
Q ss_pred CEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEc
Q 037558 83 RVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFL 162 (518)
Q Consensus 83 ~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L 162 (518)
..+.++++++++.. .|+ .+.++..++.++.++|++ ..+|..++.+.+|+.+++++|.+. .+|+.++.+..|+.++.
T Consensus 69 ~l~vl~~~~n~l~~-lp~-aig~l~~l~~l~vs~n~l-s~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~ 144 (565)
T KOG0472|consen 69 CLTVLNVHDNKLSQ-LPA-AIGELEALKSLNVSHNKL-SELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDA 144 (565)
T ss_pred ceeEEEeccchhhh-CCH-HHHHHHHHHHhhcccchH-hhccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhc
Confidence 45666666666653 333 566677777777777766 356677777777777777777777 67777777777777777
Q ss_pred cCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCcc
Q 037558 163 CSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSP 242 (518)
Q Consensus 163 ~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 242 (518)
.+|++. ..|..+..+.+|..+++.+|++....|..+. ++.|++||...|.+. .+|..++.+.+|..|++..|++..
T Consensus 145 ~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~- 220 (565)
T KOG0472|consen 145 TNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRF- 220 (565)
T ss_pred cccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccccc-
Confidence 777777 6677777777777777777777755444444 788888888877776 677778888888888888888765
Q ss_pred ccccccCCCCCCEeeCcCCCCccCCccccc-CCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcC
Q 037558 243 ILSSLGKFKSLIDLQLNENQFTGYIPRSFG-NLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISN 321 (518)
Q Consensus 243 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 321 (518)
.| .|..+..|.++.++.|++. .+|.... .++++..|+++.|++. +.|+.+..+.+|+.||+++|.++ ..|..+++
T Consensus 221 lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgn 296 (565)
T KOG0472|consen 221 LP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGN 296 (565)
T ss_pred CC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCccccc
Confidence 44 6788888888888888877 4555444 7888888888888887 78888888888888888888888 56778888
Q ss_pred CCCCCeeecccccccc-------------------------------------cCCcccc-----cccCcEEEccCccCc
Q 037558 322 LTNLKELALLYNHLSG-------------------------------------SIPPSLG-----NLILRELLLSGNHFA 359 (518)
Q Consensus 322 l~~L~~L~l~~n~l~~-------------------------------------~~p~~~~-----~~~L~~L~l~~n~~~ 359 (518)
+ .|+.|-+.+|.+.. ..|.... ....+.|++++-+++
T Consensus 297 l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt 375 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT 375 (565)
T ss_pred c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc
Confidence 8 88888888776531 0010000 023455555555444
Q ss_pred ccCchhhcCCCC---ccEEecCCCcCc-----------------------cccChhhhcCCCCcEEEcccCccccccChh
Q 037558 360 GYLPYNICQGGA---LEIFTVSENHFQ-----------------------GTIPTSVRNCTSLIRVHLNGNNLTGNISEA 413 (518)
Q Consensus 360 ~~~~~~~~~~~~---L~~L~l~~n~l~-----------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 413 (518)
. +|.......+ ....++++|++. +-+|..++.+++|..|++++|-+. .+|..
T Consensus 376 ~-VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e 453 (565)
T KOG0472|consen 376 L-VPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEE 453 (565)
T ss_pred c-CCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchh
Confidence 2 3333222222 445555555543 234445566777777777777666 55666
Q ss_pred hhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCccccCCCCCC
Q 037558 414 LAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLT 493 (518)
Q Consensus 414 l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 493 (518)
++.+..|++|+++.|+|. ..|..+.....++.+-.++|++....|..+.++.+|..||+.+|.+. .+|..+++|.+|+
T Consensus 454 ~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~ 531 (565)
T KOG0472|consen 454 MGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLR 531 (565)
T ss_pred hhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhcccccee
Confidence 666777777777777776 56666666666666666777777555566889999999999999998 8889999999999
Q ss_pred EEECcCCccc
Q 037558 494 KLILRGNQRA 503 (518)
Q Consensus 494 ~L~l~~n~~~ 503 (518)
.|+++||+|.
T Consensus 532 hLeL~gNpfr 541 (565)
T KOG0472|consen 532 HLELDGNPFR 541 (565)
T ss_pred EEEecCCccC
Confidence 9999999996
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=100.00 E-value=5.1e-36 Score=289.43 Aligned_cols=383 Identities=24% Similarity=0.359 Sum_probs=256.6
Q ss_pred CEEEEEcCCCCCcc-ccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEE
Q 037558 83 RVINISLRNTGLSG-TLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF 161 (518)
Q Consensus 83 ~v~~l~l~~~~~~~-~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 161 (518)
-|+.+|+++|.++| .+|. +..+++.++.|.|...++ ..+|+.++.+.+|++|.+++|++. .+-..++.++.|+.+.
T Consensus 8 FVrGvDfsgNDFsg~~FP~-~v~qMt~~~WLkLnrt~L-~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPH-DVEQMTQMTWLKLNRTKL-EQVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI 84 (1255)
T ss_pred eeecccccCCcCCCCcCch-hHHHhhheeEEEechhhh-hhChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence 46667777777774 3444 666777777777766666 356677777777777777777765 4555666677777777
Q ss_pred ccCCCCC-ccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCC
Q 037558 162 LCSNYLN-GSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLS 240 (518)
Q Consensus 162 L~~n~~~-~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 240 (518)
++.|++. .-+|..+.++..|.+|++++|++. ..|..+...+++-.|++++|++..+....+.+++.|-.|++++|++.
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh
Confidence 7776653 245666666777777777777665 45666666666667777777666333334456666666666666665
Q ss_pred ccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCc-ccCccccCCCCCccEEEccCCcccccCCccC
Q 037558 241 SPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELF-GSIPDEIGKMRSLSVLDLNENQFKGVLPPSI 319 (518)
Q Consensus 241 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~-~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l 319 (518)
. +|+.+..+.+|+.|++++|.+...--..+..+++|+.|.+++.+-+ ..+|..+..+.+|..+|++.|.+. ..|..+
T Consensus 164 ~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecl 241 (1255)
T KOG0444|consen 164 M-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECL 241 (1255)
T ss_pred h-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHH
Confidence 4 5555666666666666666554322233344555666666655432 235555666666666666666665 556666
Q ss_pred cCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEE
Q 037558 320 SNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRV 399 (518)
Q Consensus 320 ~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 399 (518)
..+++|+.|++++|.++. . .-......+|++|+++.|+++ .+|++++++++|+.|
T Consensus 242 y~l~~LrrLNLS~N~ite-----------------------L-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kL 296 (1255)
T KOG0444|consen 242 YKLRNLRRLNLSGNKITE-----------------------L-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKL 296 (1255)
T ss_pred hhhhhhheeccCcCceee-----------------------e-eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHH
Confidence 666666666666665542 1 011222357888888888888 788999999999999
Q ss_pred EcccCcccc-ccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcC
Q 037558 400 HLNGNNLTG-NISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHI 478 (518)
Q Consensus 400 ~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 478 (518)
...+|+++- -+|..++.+.+|+.+..++|.+. .+|..+..|..|+.|.|+.|.+. .+|+.+.-++.|++||+..|+-
T Consensus 297 y~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 297 YANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred HhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 999998873 47888899999999999999887 78888999999999999999988 7899999999999999999976
Q ss_pred cccCCccccCCCCCCEEECc
Q 037558 479 VGEIPKELGKLNSLTKLILR 498 (518)
Q Consensus 479 ~~~~~~~l~~l~~L~~L~l~ 498 (518)
.-.-|.--..-++|+.-++.
T Consensus 375 LVMPPKP~da~~~lefYNID 394 (1255)
T KOG0444|consen 375 LVMPPKPNDARKKLEFYNID 394 (1255)
T ss_pred ccCCCCcchhhhcceeeecc
Confidence 63333222222455555443
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.98 E-value=1.5e-36 Score=279.12 Aligned_cols=382 Identities=25% Similarity=0.353 Sum_probs=303.0
Q ss_pred CEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEc
Q 037558 83 RVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFL 162 (518)
Q Consensus 83 ~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L 162 (518)
....++++++++.. +|+ .+..+.+++.++++.|.+. ++++.++.+..|..++..+|++. ..|..+..+.+|..+++
T Consensus 92 ~l~~l~vs~n~ls~-lp~-~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~ 167 (565)
T KOG0472|consen 92 ALKSLNVSHNKLSE-LPE-QIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDL 167 (565)
T ss_pred HHHHhhcccchHhh-ccH-HHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhc
Confidence 34567778777763 555 6888899999999999884 57778999999999999999998 78888999999999999
Q ss_pred cCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCcc
Q 037558 163 CSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSP 242 (518)
Q Consensus 163 ~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 242 (518)
.+|.+. .+|+..-+++.|++++..+|-+. .+|..++.+.+|+-|++..|++. ..| .|.++..|++++++.|.+.-.
T Consensus 168 ~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~l 243 (565)
T KOG0472|consen 168 EGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEML 243 (565)
T ss_pred cccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhh
Confidence 999888 44444444888888888888765 66778888888888888888887 556 688888888888888887764
Q ss_pred ccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCccccc--------
Q 037558 243 ILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGV-------- 314 (518)
Q Consensus 243 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~-------- 314 (518)
.......+.++..||+..|++. ..|+.+..+.+|.+|++++|.++ .+|..++++ .|++|.+.+|.+...
T Consensus 244 pae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~g 320 (565)
T KOG0472|consen 244 PAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKG 320 (565)
T ss_pred HHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHccc
Confidence 3444557788888888888888 57888888888888888888887 577778888 888888888765310
Q ss_pred -----------------------------CC-c---cCcCCCCCCeeecccccccccCCccc-cc---ccCcEEEccCcc
Q 037558 315 -----------------------------LP-P---SISNLTNLKELALLYNHLSGSIPPSL-GN---LILRELLLSGNH 357 (518)
Q Consensus 315 -----------------------------~~-~---~l~~l~~L~~L~l~~n~l~~~~p~~~-~~---~~L~~L~l~~n~ 357 (518)
.+ . ......+.+.|++++-+++ .+|... .. .-++..+++.|+
T Consensus 321 T~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNq 399 (565)
T KOG0472|consen 321 TQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQ 399 (565)
T ss_pred HHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccch
Confidence 00 0 1122345677777777776 444432 22 225666666654
Q ss_pred C-----------------------cccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhh
Q 037558 358 F-----------------------AGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEAL 414 (518)
Q Consensus 358 ~-----------------------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 414 (518)
+ .+.+|..++.++++..|++++|.+. .+|..++.+..|+.|+++.|++. .+|.++
T Consensus 400 L~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~ 477 (565)
T KOG0472|consen 400 LCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECL 477 (565)
T ss_pred HhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHH
Confidence 3 3466777888999999999999887 78999999999999999999988 778888
Q ss_pred hCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCc
Q 037558 415 AIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIV 479 (518)
Q Consensus 415 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 479 (518)
..+..++.+-.++|++....++.+.++.+|.+||+.+|.+. .+|..+++|.+|++|++.+|++.
T Consensus 478 y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 478 YELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 88888888888999999777777999999999999999998 78999999999999999999997
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.1e-34 Score=280.38 Aligned_cols=339 Identities=27% Similarity=0.389 Sum_probs=261.6
Q ss_pred CCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCc-CCCccCCCCCCCcE
Q 037558 81 AGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDG-SIPPEVGQLSSMEV 159 (518)
Q Consensus 81 ~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~p~~l~~l~~L~~ 159 (518)
..+++-+.|...++. .+|+ .++.+.+|++|++++|++.. +...++.++.||.+.+.+|++.. -+|..+.++..|..
T Consensus 31 Mt~~~WLkLnrt~L~-~vPe-EL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~ 107 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLE-QVPE-ELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTI 107 (1255)
T ss_pred hhheeEEEechhhhh-hChH-HHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHHHhhhccccccCCCCchhccccccee
Confidence 457788888887776 4666 79999999999999999854 45568899999999999999864 58999999999999
Q ss_pred EEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcC
Q 037558 160 FFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSL 239 (518)
Q Consensus 160 L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 239 (518)
|||++|++. +.|..+..-+++-+|++++|+|..+...-+.+++.|-.||+++|++. .+|..+..+..|++|.+++|++
T Consensus 108 lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 108 LDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred eecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChh
Confidence 999999998 88999999999999999999998665556779999999999999998 7788899999999999999998
Q ss_pred CccccccccCCCCCCEeeCcCCCCc-cCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCcc
Q 037558 240 SSPILSSLGKFKSLIDLQLNENQFT-GYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPS 318 (518)
Q Consensus 240 ~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~ 318 (518)
...-...+..+++|+.|.+++.+-+ ..+|..+..+.+|..++++.|.+. .+|+.+..+++|+.|++++|+++ .+...
T Consensus 186 ~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~ 263 (1255)
T KOG0444|consen 186 NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMT 263 (1255)
T ss_pred hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeecc
Confidence 8766667777889999999987643 478899999999999999999987 89999999999999999999998 45556
Q ss_pred CcCCCCCCeeecccccccccCCccccc-ccCcEEEccCccCccc-CchhhcCCCCccEEecCCCcCccccChhhhcCCCC
Q 037558 319 ISNLTNLKELALLYNHLSGSIPPSLGN-LILRELLLSGNHFAGY-LPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSL 396 (518)
Q Consensus 319 l~~l~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 396 (518)
.+...+|+.|+++.|+++ .+|..... +.|+.|...+|++.-. +|..++.+.+|+.+...+|.+. .+|+.+++|..|
T Consensus 264 ~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL 341 (1255)
T KOG0444|consen 264 EGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKL 341 (1255)
T ss_pred HHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHH
Confidence 677788999999999888 45554433 5555555555554322 4444455555555555555443 445555555555
Q ss_pred cEEEcccCccccccChhhhCCCCCCEEecccCc
Q 037558 397 IRVHLNGNNLTGNISEALAIYPNLTFIDLSRNN 429 (518)
Q Consensus 397 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 429 (518)
+.|.|+.|++- .+|+++.-++.|+.||+.+|.
T Consensus 342 ~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 342 QKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred HHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 55555555444 344444444555555554443
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=1.2e-32 Score=277.79 Aligned_cols=398 Identities=27% Similarity=0.342 Sum_probs=246.9
Q ss_pred CEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEc
Q 037558 83 RVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFL 162 (518)
Q Consensus 83 ~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L 162 (518)
++..|+++++.+. .+|. .+..+++|+.|+++.|.+ ..+|.+..++++|+++.|.+|.+. .+|..+..+++|++|++
T Consensus 46 ~L~~l~lsnn~~~-~fp~-~it~l~~L~~ln~s~n~i-~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPI-QITLLSHLRQLNLSRNYI-RSVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDL 121 (1081)
T ss_pred eeEEeeccccccc-cCCc-hhhhHHHHhhcccchhhH-hhCchhhhhhhcchhheeccchhh-cCchhHHhhhccccccc
Confidence 3677888877665 3444 577788888888888876 356677888888888888888777 78888888888888888
Q ss_pred cCCCCCccCCcCCcCCCCCCEEEccCc-------------------cccccCCccccCCCCCcEEEcccCcCCCCcchhc
Q 037558 163 CSNYLNGSVPPSLGNLSHISLLFIYDN-------------------LFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFF 223 (518)
Q Consensus 163 ~~n~~~~~~p~~l~~l~~L~~L~l~~n-------------------~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l 223 (518)
+.|.+. .+|..+..+..+..+..++| .+.+.++..+..+.. .|++.+|.+.. ..+
T Consensus 122 S~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~dl 195 (1081)
T KOG0618|consen 122 SFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---LDL 195 (1081)
T ss_pred chhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh---hhh
Confidence 888876 56665555555444444444 333333333333333 35555555441 112
Q ss_pred cCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccE
Q 037558 224 GNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSV 303 (518)
Q Consensus 224 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 303 (518)
..+.+|+.|....|.++... -.-++++.|+.+.|.+....+ -....+|+++++++|+++ .+|+|+..+.+|+.
T Consensus 196 s~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~ 268 (1081)
T KOG0618|consen 196 SNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEA 268 (1081)
T ss_pred hhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcccceE
Confidence 22233333333322222100 001233333333333331111 112344555555555554 34455555555555
Q ss_pred EEccCCcccccCCccCcCCCCCCeeecccccccccCCcccc-cccCcEEEccCccCc-----------------------
Q 037558 304 LDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLG-NLILRELLLSGNHFA----------------------- 359 (518)
Q Consensus 304 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~-~~~L~~L~l~~n~~~----------------------- 359 (518)
++..+|.+. .+|..+....+|+.+.+..|.+. .+|.... ...+++|++..|++.
T Consensus 269 l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~ 346 (1081)
T KOG0618|consen 269 LNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNK 346 (1081)
T ss_pred ecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcc
Confidence 555555553 34444444444444444444444 2333222 244444444444433
Q ss_pred --ccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCcc
Q 037558 360 --GYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSN 437 (518)
Q Consensus 360 --~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 437 (518)
......-...+.|+.|.+.+|.+++..-..+.++++|+.|+|+.|++.......+.+++.|+.|+||+|+++ .+|..
T Consensus 347 l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~t 425 (1081)
T KOG0618|consen 347 LSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDT 425 (1081)
T ss_pred ccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHH
Confidence 222111122345788888899888777667788899999999999998777778889999999999999998 67788
Q ss_pred ccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCcc
Q 037558 438 WGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQR 502 (518)
Q Consensus 438 ~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 502 (518)
+.+++.|++|...+|++. .+| .+.++++|+.+|++.|+++.........-+.|++||++||.-
T Consensus 426 va~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 426 VANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred HHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 889999999999999988 777 788999999999999998764433333338999999999984
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=5.3e-32 Score=273.06 Aligned_cols=399 Identities=25% Similarity=0.293 Sum_probs=301.2
Q ss_pred CEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEc
Q 037558 83 RVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFL 162 (518)
Q Consensus 83 ~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L 162 (518)
+++.++++.|.+-....+ ...+.-+|+.|++++|.+ +.+|..+..+++|+.|+++.|.+. ..|...+++.+|+++.|
T Consensus 22 ~~~~ln~~~N~~l~~pl~-~~~~~v~L~~l~lsnn~~-~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL 98 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRPLE-FVEKRVKLKSLDLSNNQI-SSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNL 98 (1081)
T ss_pred HHHhhhccccccccCchH-HhhheeeeEEeecccccc-ccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhhee
Confidence 366677776654432222 333444599999999987 567888999999999999999988 78888999999999999
Q ss_pred cCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccC-------------------cCCCCcchhc
Q 037558 163 CSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSN-------------------QFSGPIPLFF 223 (518)
Q Consensus 163 ~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n-------------------~~~~~~~~~l 223 (518)
.+|.+. ..|..+..+++|++|++++|++. .+|..+..+..++.+..++| .+.+.++..+
T Consensus 99 ~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i 176 (1081)
T KOG0618|consen 99 KNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDI 176 (1081)
T ss_pred ccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcch
Confidence 998887 88999999999999999999887 44555555555555555555 3333333333
Q ss_pred cCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccE
Q 037558 224 GNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSV 303 (518)
Q Consensus 224 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 303 (518)
..+.. .|++.+|.+. ...+..+.+|+.+....|++... .-.-++++.|+.++|.++...+. ....+|++
T Consensus 177 ~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~ 245 (1081)
T KOG0618|consen 177 YNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDVH--PVPLNLQY 245 (1081)
T ss_pred hhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeeccc--ccccccee
Confidence 33332 3555555543 12344445555555555554421 11346788888888887733332 23468999
Q ss_pred EEccCCcccccCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCc
Q 037558 304 LDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQ 383 (518)
Q Consensus 304 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 383 (518)
+++++|.+. .+|.+++.+.+|+.+...+|.++......+...+++.|....|++. .+|......+.|+.|++..|.+.
T Consensus 246 ~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~ 323 (1081)
T KOG0618|consen 246 LDISHNNLS-NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP 323 (1081)
T ss_pred eecchhhhh-cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc
Confidence 999999999 6779999999999999999999743334444588999999999876 45556777899999999999886
Q ss_pred cccChhhh--------------------------cCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCcc
Q 037558 384 GTIPTSVR--------------------------NCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSN 437 (518)
Q Consensus 384 ~~~~~~~~--------------------------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 437 (518)
..|+.+. .++.|+.|++.+|.+++.....+.++.+|+.|+|++|++.......
T Consensus 324 -~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~ 402 (1081)
T KOG0618|consen 324 -SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASK 402 (1081)
T ss_pred -ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHH
Confidence 3443221 2345778889999999888888899999999999999998666667
Q ss_pred ccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCccc
Q 037558 438 WGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRA 503 (518)
Q Consensus 438 ~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 503 (518)
+.+++.|++|++|+|+++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|++.|++.
T Consensus 403 ~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 403 LRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred HhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhh
Confidence 889999999999999999 78899999999999999999998 777 8999999999999999986
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.94 E-value=5.7e-25 Score=246.13 Aligned_cols=338 Identities=23% Similarity=0.248 Sum_probs=198.3
Q ss_pred CccccCCCCCCEEECCCCC------CCcCCCccCCCCC-CCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCC
Q 037558 124 PPEVGLLSHLKFLFIDTNK------LDGSIPPEVGQLS-SMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIP 196 (518)
Q Consensus 124 ~~~~~~l~~L~~L~l~~n~------~~~~~p~~l~~l~-~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~ 196 (518)
+.+|..+++|+.|.+..+. +...+|..+..++ +|+.|.+.++.+. .+|..+ ...+|+.|++.+|.+. .++
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccc
Confidence 3457778888888876543 2234666666654 5888888877765 666666 4577888888887776 345
Q ss_pred ccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCC
Q 037558 197 SDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTS 276 (518)
Q Consensus 197 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 276 (518)
..+..+++|++|+++++.....+|. +..+++|+.|++++|..-..+|..+..+++|+.|++++|.....+|..+ ++++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s 705 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS 705 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence 6677778888888877665445554 6677788888887776656677777777788888887765444566544 5777
Q ss_pred CcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccc---c----CCccc-ccccC
Q 037558 277 LSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSG---S----IPPSL-GNLIL 348 (518)
Q Consensus 277 L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~---~----~p~~~-~~~~L 348 (518)
|+.|++++|...+.+|.. .++|+.|++++|.+. .+|..+ .+++|+.|.+.++.... . .+... ..++|
T Consensus 706 L~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred CCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccc
Confidence 888888777655455542 356777777777765 455443 45677777666533210 0 00000 11345
Q ss_pred cEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccC
Q 037558 349 RELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRN 428 (518)
Q Consensus 349 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 428 (518)
+.|++++|...+.+|..+.++++|+.|++++|...+.+|... .+++|+.|++++|.....+|.. .++|+.|+|++|
T Consensus 781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n 856 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRT 856 (1153)
T ss_pred hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCC
Confidence 555555555555555555555555555555553333444433 3455555555554332222221 234555555555
Q ss_pred ccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCC
Q 037558 429 NFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLN 476 (518)
Q Consensus 429 ~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n 476 (518)
.+. .+|..+..+++|+.|++++|+-...+|..+..+++|+.+++++|
T Consensus 857 ~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 857 GIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 554 34444455555555555554333344444445555555555555
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.94 E-value=9.5e-25 Score=244.34 Aligned_cols=357 Identities=20% Similarity=0.229 Sum_probs=241.6
Q ss_pred CEEEEEcCCCCCcc-ccCCccCCCCCCCcEEeCCCCC------CcccCCccccCCC-CCCEEECCCCCCCcCCCccCCCC
Q 037558 83 RVINISLRNTGLSG-TLHGFSFSSFPRLAYLDLTGSG------LFGTIPPEVGLLS-HLKFLFIDTNKLDGSIPPEVGQL 154 (518)
Q Consensus 83 ~v~~l~l~~~~~~~-~~~~~~l~~l~~L~~L~L~~~~------~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~p~~l~~l 154 (518)
+|..|.+....+.. .+....|.++++|+.|.+..+. +...+|..+..++ +|+.|.+.++.+. .+|..+ ..
T Consensus 533 ~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~ 610 (1153)
T PLN03210 533 KVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RP 610 (1153)
T ss_pred eeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-Cc
Confidence 45555544333221 2333357778888888876543 2233566666654 5888888887776 677766 46
Q ss_pred CCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEc
Q 037558 155 SSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYL 234 (518)
Q Consensus 155 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 234 (518)
.+|++|++++|.+. .++..+..+++|+.|+++++.....+| .++.+++|++|++++|.....+|..+..+++|+.|++
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 78888888888776 567777778888888888776555555 3777788888888887766677777888888888888
Q ss_pred ccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCccc--
Q 037558 235 YGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFK-- 312 (518)
Q Consensus 235 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~-- 312 (518)
++|..-..+|..+ ++++|+.|++++|.....+|.. ..+|++|++++|.+. .+|..+ .+++|++|++.++...
T Consensus 689 ~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 689 SRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKL 762 (1153)
T ss_pred CCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhc
Confidence 8775545455544 6778888888887655455542 356788888888765 566544 4677777777664321
Q ss_pred -----ccCCccCcCCCCCCeeecccccccccCCccccc-ccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCcccc
Q 037558 313 -----GVLPPSISNLTNLKELALLYNHLSGSIPPSLGN-LILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTI 386 (518)
Q Consensus 313 -----~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 386 (518)
...+.....+++|+.|++++|...+.+|..+.. ++|+.|++++|...+.+|... .+++|+.|++++|.....+
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~ 841 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTF 841 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccc
Confidence 111112233467888888888776677776655 778888888877666666554 5678888888887554444
Q ss_pred ChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCcc
Q 037558 387 PTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNI 454 (518)
Q Consensus 387 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l 454 (518)
|.. ..+|+.|++++|.++ .+|.++..+++|++|++++|+-...+|.....+++|+.+++++|.-
T Consensus 842 p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 842 PDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred ccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 432 357788888888877 5677778888888888887654445666667778888888888753
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=9.8e-25 Score=201.20 Aligned_cols=273 Identities=25% Similarity=0.290 Sum_probs=186.0
Q ss_pred CEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCC-CCCCcCCCccCCCCCCCcEEE
Q 037558 83 RVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDT-NKLDGSIPPEVGQLSSMEVFF 161 (518)
Q Consensus 83 ~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~p~~l~~l~~L~~L~ 161 (518)
..++|+|..|++.. +|+..|..+++||.|||++|.++..-|++|..+++|..|-+.+ |+|+...-..|+++..|+.|.
T Consensus 68 ~tveirLdqN~I~~-iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQISS-IPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCCccc-CChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 67888888888874 4444888999999999999988888888888888887777665 788844445588888999988
Q ss_pred ccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCC------------CCcchhccCCCCC
Q 037558 162 LCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFS------------GPIPLFFGNLSNL 229 (518)
Q Consensus 162 L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~------------~~~~~~l~~l~~L 229 (518)
+.-|++.-.....|..+++|..|.+.+|.+...-...+..+..++++.+..|.+- ...|..++...-.
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 8888887666677888888888888888887655557888888888888877632 1112222222222
Q ss_pred cEEEcccCcCCccccccccCCCCCCEe--eC-cCCCCccCCc-ccccCCCCCcEEEccCCcCcccCccccCCCCCccEEE
Q 037558 230 KSLYLYGNSLSSPILSSLGKFKSLIDL--QL-NENQFTGYIP-RSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLD 305 (518)
Q Consensus 230 ~~L~l~~n~~~~~~~~~l~~l~~L~~L--~l-~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 305 (518)
.-..+.+.++.......|... ++.+ .+ +.+...+..| ..|..+++|+.|++++|+++++-+.+|.+...+++|.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred chHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 333333333333222222211 1111 11 1222222333 3467778888888888888877777787788888888
Q ss_pred ccCCcccccCCccCcCCCCCCeeecccccccccCCccccc-ccCcEEEccCccC
Q 037558 306 LNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGN-LILRELLLSGNHF 358 (518)
Q Consensus 306 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~~ 358 (518)
+..|++...-...|.++..|+.|++++|+++...|..|.. ..|.+|.+-.|++
T Consensus 305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 8888877555556777778888888888887666666665 6677777777655
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=3.9e-21 Score=200.66 Aligned_cols=264 Identities=24% Similarity=0.300 Sum_probs=157.0
Q ss_pred CCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCc
Q 037558 180 HISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLN 259 (518)
Q Consensus 180 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 259 (518)
.-..|+++++.++ .+|..+. ++|+.|++.+|.++. +|. ..++|++|++++|.++. +|.. .++|+.|+++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeecc
Confidence 4567788888777 4566554 367888888888773 443 24677888888887775 3432 2467777777
Q ss_pred CCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccC
Q 037558 260 ENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSI 339 (518)
Q Consensus 260 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 339 (518)
+|.+.. +|.. .++|+.|++++|+++ .+|.. .++|+.|++++|.+.+ +|.. ..+|+.|++++|.+++ +
T Consensus 271 ~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-L 337 (788)
T PRK15387 271 SNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-L 337 (788)
T ss_pred CCchhh-hhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-c
Confidence 777663 3432 245777777777776 44532 3667777777777773 3432 2356677777777763 4
Q ss_pred CcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCC
Q 037558 340 PPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPN 419 (518)
Q Consensus 340 p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 419 (518)
|.. ..+|+.|++++|++.+ +|.. ..+|+.|++++|.+. .+|.. ..+|+.|++++|++++ +|.. .++
T Consensus 338 P~l--p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~ 403 (788)
T PRK15387 338 PTL--PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSE 403 (788)
T ss_pred ccc--ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---ccC
Confidence 432 2456677777776664 2221 235566666666665 34432 2456666666666663 2221 245
Q ss_pred CCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCccc
Q 037558 420 LTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKEL 486 (518)
Q Consensus 420 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 486 (518)
|+.|++++|++.+ +|.. ..+|+.|++++|+++ .+|..+.++++|+.|+|++|++++..+..+
T Consensus 404 L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 404 LKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 6666666666653 3332 234556666666665 456556666666666666666665555544
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=2.1e-20 Score=195.26 Aligned_cols=264 Identities=25% Similarity=0.341 Sum_probs=186.5
Q ss_pred CCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcc
Q 037558 156 SMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLY 235 (518)
Q Consensus 156 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 235 (518)
.-..|+++.+.++ .+|..+. ++|+.|++.+|+++. +|. ..++|++|++++|+++. +|.. .++|+.|+++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeecc
Confidence 4567888888887 6777665 478888888888874 343 24788888888888873 4532 4678888888
Q ss_pred cCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccC
Q 037558 236 GNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVL 315 (518)
Q Consensus 236 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 315 (518)
+|.++. +|..+ .+|+.|++++|+++. +|. .+++|+.|++++|++++ +|.. ..+|+.|++++|.+. .+
T Consensus 271 ~N~L~~-Lp~lp---~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~L 337 (788)
T PRK15387 271 SNPLTH-LPALP---SGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SL 337 (788)
T ss_pred CCchhh-hhhch---hhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCccc-cc
Confidence 888765 33322 467788888888873 444 24678888888888874 4542 245777888888887 35
Q ss_pred CccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCC
Q 037558 316 PPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTS 395 (518)
Q Consensus 316 ~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 395 (518)
|.. ..+|+.|++++|++++ +|.. ..+++.|++++|.+.+ +|.. ..+|+.|++++|.+.+ +|.. .++
T Consensus 338 P~l---p~~Lq~LdLS~N~Ls~-LP~l--p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~ 403 (788)
T PRK15387 338 PTL---PSGLQELSVSDNQLAS-LPTL--PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSE 403 (788)
T ss_pred ccc---ccccceEecCCCccCC-CCCC--Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccC
Confidence 532 2478888888888873 5542 3567788888888774 4432 2468888888888873 5542 357
Q ss_pred CcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccc
Q 037558 396 LIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREI 462 (518)
Q Consensus 396 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~ 462 (518)
|+.|++++|+++. +|.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..+
T Consensus 404 L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 404 LKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 8888888888874 4432 246778888888887 667778888888888888888887766655
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.84 E-value=3.3e-23 Score=191.16 Aligned_cols=276 Identities=19% Similarity=0.165 Sum_probs=203.3
Q ss_pred CCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccC-CCCCccCCcCCcCCCCCCEEEc
Q 037558 108 RLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCS-NYLNGSVPPSLGNLSHISLLFI 186 (518)
Q Consensus 108 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~-n~~~~~~p~~l~~l~~L~~L~l 186 (518)
.-.+++|..|+++..-+.+|+.+++||.|||++|.|+..-|+.|.++++|..|-+.+ |+|+......|.++..|+-|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 677899999999877778899999999999999999988899999999987776666 8888555566899999999999
Q ss_pred cCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCC------------ccccccccCCCCCC
Q 037558 187 YDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLS------------SPILSSLGKFKSLI 254 (518)
Q Consensus 187 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~------------~~~~~~l~~l~~L~ 254 (518)
.-|++.-...+.+..+++|..|.+.+|.+.......|..+..++.+.+..|.+- ...+..++......
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 999988777888999999999999999988555557888889999988887632 11222333333333
Q ss_pred EeeCcCCCCccCCcccccC-CCCCcEEEccCCcCcccCc-cccCCCCCccEEEccCCcccccCCccCcCCCCCCeeeccc
Q 037558 255 DLQLNENQFTGYIPRSFGN-LTSLSTLRLSKNELFGSIP-DEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLY 332 (518)
Q Consensus 255 ~L~l~~n~~~~~~~~~l~~-l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 332 (518)
-..+.+.++...-+..|.. +..+.+=-.+.+...++.| ..|..+++|++|++++|++++.-+.+|.....+++|.+..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 3344444443333333321 1222221222232333444 4578889999999999999988888898999999999999
Q ss_pred ccccccCCccccc-ccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCc
Q 037558 333 NHLSGSIPPSLGN-LILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQ 383 (518)
Q Consensus 333 n~l~~~~p~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 383 (518)
|++...-...|.. ..|++|++.+|+++...|..|.....|.+|++-.|.+.
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 9887433333333 77888888888888888888888888888888777653
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=2.3e-19 Score=188.56 Aligned_cols=247 Identities=26% Similarity=0.422 Sum_probs=175.4
Q ss_pred CCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEc
Q 037558 131 SHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDL 210 (518)
Q Consensus 131 ~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 210 (518)
.+...|+++++.++ .+|..+. ++|+.|++++|.+. .+|..+. .+|++|++++|.++. +|..+. ++|+.|++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEEC
Confidence 45677888887777 5676553 46888888888877 5565554 478888888887773 454443 46888888
Q ss_pred ccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCccc
Q 037558 211 SSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGS 290 (518)
Q Consensus 211 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 290 (518)
++|.+. .+|..+. .+|+.|++++|+++. +|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|.++ .
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~ 318 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-A 318 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-c
Confidence 888877 5565543 478888888888875 555553 478888888888874 454432 46888888888887 4
Q ss_pred CccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCC
Q 037558 291 IPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGG 370 (518)
Q Consensus 291 ~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 370 (518)
+|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+ .+.|+.|++++|.+.. +|..+. .
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l-p~~L~~LdLs~N~Lt~-LP~~l~--~ 388 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL-PPTITTLDVSRNALTN-LPENLP--A 388 (754)
T ss_pred CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh-cCCcCEEECCCCcCCC-CCHhHH--H
Confidence 55443 3678888888888874 565443 68888899888887 455533 3578899999988874 444443 3
Q ss_pred CccEEecCCCcCccccChhhh----cCCCCcEEEcccCccc
Q 037558 371 ALEIFTVSENHFQGTIPTSVR----NCTSLIRVHLNGNNLT 407 (518)
Q Consensus 371 ~L~~L~l~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~ 407 (518)
.|+.|++++|++. .+|..+. .++.+..+++.+|.++
T Consensus 389 sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 389 ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 6888999999887 5565443 4578889999999887
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.78 E-value=5.2e-19 Score=185.97 Aligned_cols=139 Identities=20% Similarity=0.349 Sum_probs=69.2
Q ss_pred CCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcc
Q 037558 156 SMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLY 235 (518)
Q Consensus 156 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 235 (518)
+...|+++++.++ .+|..+. ++|+.|++++|.++. +|..+. ++|++|++++|.++ .+|..+. ..|+.|+++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 4566777777666 4555443 366777777776663 343332 35666666666665 3343332 345555665
Q ss_pred cCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCccc
Q 037558 236 GNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFK 312 (518)
Q Consensus 236 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 312 (518)
+|.+.. +|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.+.
T Consensus 250 ~N~L~~-LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 250 INRITE-LPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT 317 (754)
T ss_pred CCccCc-CChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc
Confidence 555543 333332 24555555555554 2333322 24555555555444 2332221 23444444444444
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=1.1e-19 Score=177.36 Aligned_cols=273 Identities=25% Similarity=0.295 Sum_probs=153.0
Q ss_pred EEEcccCcCC-CCcchhccCCCCCcEEEcccCcCCcc----ccccccCCCCCCEeeCcCCCCcc------CCcccccCCC
Q 037558 207 NLDLSSNQFS-GPIPLFFGNLSNLKSLYLYGNSLSSP----ILSSLGKFKSLIDLQLNENQFTG------YIPRSFGNLT 275 (518)
Q Consensus 207 ~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~------~~~~~l~~l~ 275 (518)
.|+|..+.++ ......+..+..|++|+++++.++.. ++..+...+.+++++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 3566666665 23344455666677777777776432 33344455567777776665541 1223344455
Q ss_pred CCcEEEccCCcCcccCccccCCCCC---ccEEEccCCccccc----CCccCcCC-CCCCeeecccccccccCCccccccc
Q 037558 276 SLSTLRLSKNELFGSIPDEIGKMRS---LSVLDLNENQFKGV----LPPSISNL-TNLKELALLYNHLSGSIPPSLGNLI 347 (518)
Q Consensus 276 ~L~~L~l~~n~l~~~~p~~~~~l~~---L~~L~l~~n~l~~~----~~~~l~~l-~~L~~L~l~~n~l~~~~p~~~~~~~ 347 (518)
+|+.|++++|.+.+..+..+..+.. |++|++++|.+.+. +...+..+ ++
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~----------------------- 138 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPA----------------------- 138 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCC-----------------------
Confidence 6666666665554333333333322 55555555554421 11122223 34
Q ss_pred CcEEEccCccCccc----CchhhcCCCCccEEecCCCcCccc----cChhhhcCCCCcEEEcccCccccc----cChhhh
Q 037558 348 LRELLLSGNHFAGY----LPYNICQGGALEIFTVSENHFQGT----IPTSVRNCTSLIRVHLNGNNLTGN----ISEALA 415 (518)
Q Consensus 348 L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~ 415 (518)
++.|++++|.+.+. ++..+..+.+|+.|++++|.+.+. ++..+..+++|+.|++++|.+++. +...+.
T Consensus 139 L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~ 218 (319)
T cd00116 139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLA 218 (319)
T ss_pred ceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhc
Confidence 44445554444421 223344555667777777666532 223344556777777777777633 234455
Q ss_pred CCCCCCEEecccCccccccCccc-----cCCCCCCEEEccCCcccc----CccccccCCCCCCEEeCcCCcCccc----C
Q 037558 416 IYPNLTFIDLSRNNFYGEISSNW-----GKCPKLDTLNVSMNNITG----GIPREIGNSSQLQALDLSLNHIVGE----I 482 (518)
Q Consensus 416 ~l~~L~~L~L~~n~l~~~~~~~~-----~~~~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~ 482 (518)
.+++|++|++++|++.+.....+ ...+.|++|++++|.+++ .+...+..+++|+++++++|++... +
T Consensus 219 ~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~ 298 (319)
T cd00116 219 SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLL 298 (319)
T ss_pred ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHH
Confidence 67778888888887764321111 124688888888887762 2334455667888888888888754 3
Q ss_pred CccccCC-CCCCEEECcCCcc
Q 037558 483 PKELGKL-NSLTKLILRGNQR 502 (518)
Q Consensus 483 ~~~l~~l-~~L~~L~l~~n~~ 502 (518)
...+... +.|+++++.+|++
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 299 AESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHhhcCCchhhcccCCCCC
Confidence 3344444 6788888887764
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=1.6e-19 Score=176.18 Aligned_cols=277 Identities=21% Similarity=0.226 Sum_probs=182.0
Q ss_pred EEEccCccccc-cCCccccCCCCCcEEEcccCcCCCC----cchhccCCCCCcEEEcccCcCCc------cccccccCCC
Q 037558 183 LLFIYDNLFSG-FIPSDIGNSKSIFNLDLSSNQFSGP----IPLFFGNLSNLKSLYLYGNSLSS------PILSSLGKFK 251 (518)
Q Consensus 183 ~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~------~~~~~l~~l~ 251 (518)
.|+|..+.+++ .....+..+.+|++++++++.++.. ++..+...+.+++++++++.+.+ ..+..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 46777777763 4444566778899999999998643 45556678889999999988762 2345677788
Q ss_pred CCCEeeCcCCCCccCCcccccCCCC---CcEEEccCCcCcc----cCccccCCC-CCccEEEccCCccccc----CCccC
Q 037558 252 SLIDLQLNENQFTGYIPRSFGNLTS---LSTLRLSKNELFG----SIPDEIGKM-RSLSVLDLNENQFKGV----LPPSI 319 (518)
Q Consensus 252 ~L~~L~l~~n~~~~~~~~~l~~l~~---L~~L~l~~n~l~~----~~p~~~~~l-~~L~~L~l~~n~l~~~----~~~~l 319 (518)
+|+.|++++|.+.+..+..+..+.. |++|++++|++++ .+...+..+ ++|+.|++++|.+++. ++..+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 9999999999998656655655555 9999999998873 233445566 8999999999998843 23345
Q ss_pred cCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccc----cChhhhcCCC
Q 037558 320 SNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGT----IPTSVRNCTS 395 (518)
Q Consensus 320 ~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~ 395 (518)
..+++|++|++++|.+.+.... .++..+...++|+.|++++|.+.+. ++..+..+++
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~-------------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~ 222 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIR-------------------ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS 222 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHH-------------------HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCC
Confidence 5666788888777776632111 1111222334555555555544322 2234455677
Q ss_pred CcEEEcccCccccccChhhh-----CCCCCCEEecccCcccc----ccCccccCCCCCCEEEccCCccccC----ccccc
Q 037558 396 LIRVHLNGNNLTGNISEALA-----IYPNLTFIDLSRNNFYG----EISSNWGKCPKLDTLNVSMNNITGG----IPREI 462 (518)
Q Consensus 396 L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~ls~n~l~~~----~~~~~ 462 (518)
|++|++++|++++.....+. ..++|++|++++|.++. .+...+..+++|+++++++|.+... ....+
T Consensus 223 L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~ 302 (319)
T cd00116 223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESL 302 (319)
T ss_pred CCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHH
Confidence 77777777777653222221 23678888888887752 1234455567888888888888743 33333
Q ss_pred cCC-CCCCEEeCcCCcC
Q 037558 463 GNS-SQLQALDLSLNHI 478 (518)
Q Consensus 463 ~~l-~~L~~L~L~~n~l 478 (518)
... +.|+++++.+|++
T Consensus 303 ~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 303 LEPGNELESLWVKDDSF 319 (319)
T ss_pred hhcCCchhhcccCCCCC
Confidence 344 6788888887753
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=1.8e-18 Score=142.22 Aligned_cols=164 Identities=25% Similarity=0.468 Sum_probs=93.3
Q ss_pred CCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCC
Q 037558 103 FSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHIS 182 (518)
Q Consensus 103 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~ 182 (518)
+..+.+++.|.|++|+++ .+|..+..+.+|+.|++++|+++ .+|..++.+++|+.|++.-|.+. .+|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 445556666666666663 34445666666666666666666 56666666666666666666665 5666666666666
Q ss_pred EEEccCccccc-cCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCC
Q 037558 183 LLFIYDNLFSG-FIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNEN 261 (518)
Q Consensus 183 ~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 261 (518)
+|++.+|.+.. ..|..|..+..|+.|.+++|.+. .+|..++++++| +.|.+..|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~l------------------------qil~lrdn 160 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNL------------------------QILSLRDN 160 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcce------------------------eEEeeccC
Confidence 66666665543 34545555555555555555554 344444444444 44444444
Q ss_pred CCccCCcccccCCCCCcEEEccCCcCcccCccccC
Q 037558 262 QFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIG 296 (518)
Q Consensus 262 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~ 296 (518)
.+. .+|..++.+..|++|++.+|+++ .+|..++
T Consensus 161 dll-~lpkeig~lt~lrelhiqgnrl~-vlppel~ 193 (264)
T KOG0617|consen 161 DLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELA 193 (264)
T ss_pred chh-hCcHHHHHHHHHHHHhcccceee-ecChhhh
Confidence 443 34555555555666666666555 3444333
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=3e-18 Score=140.95 Aligned_cols=160 Identities=30% Similarity=0.527 Sum_probs=99.1
Q ss_pred CCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcc
Q 037558 156 SMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLY 235 (518)
Q Consensus 156 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 235 (518)
+++.|.+++|+++ .+|+.+..+.+|++|++.+|++. ..|.+++.+++|+.|++.-|++. ..|..|++++.|+.|++.
T Consensus 34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 3344444444443 34444444444444444444444 33444555555555555555554 556666666666666666
Q ss_pred cCcCCc-cccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCccccc
Q 037558 236 GNSLSS-PILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGV 314 (518)
Q Consensus 236 ~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 314 (518)
+|+++. ..|..|..+..|+.|.+++|.+. .+|..++++++|+.|.++.|.+- .+|..++.++.|++|.+.+|+++ .
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-v 187 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-V 187 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-e
Confidence 666553 34555666667777777777776 66777888888888888888776 67777888888888888888877 5
Q ss_pred CCccCcC
Q 037558 315 LPPSISN 321 (518)
Q Consensus 315 ~~~~l~~ 321 (518)
+|..++.
T Consensus 188 lppel~~ 194 (264)
T KOG0617|consen 188 LPPELAN 194 (264)
T ss_pred cChhhhh
Confidence 5555443
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.57 E-value=2e-14 Score=150.98 Aligned_cols=147 Identities=33% Similarity=0.564 Sum_probs=94.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCCCCCcCCCCCCCCCCCCC-----ccCceeeCCC-----CCEEEEEcCCCCCccccC
Q 037558 30 SEPNEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPC-----AWYGISCNDA-----GRVINISLRNTGLSGTLH 99 (518)
Q Consensus 30 ~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~c-----~w~g~~c~~~-----~~v~~l~l~~~~~~~~~~ 99 (518)
+..++|.+||+++|+.+.. +. ..+|.+ |+| .|.|+.|... ..|+.|+|+++.+.|.+|
T Consensus 368 ~t~~~~~~aL~~~k~~~~~-~~--~~~W~g---------~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip 435 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGL-PL--RFGWNG---------DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIP 435 (623)
T ss_pred ccCchHHHHHHHHHHhcCC-cc--cCCCCC---------CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCC
Confidence 3456789999999998864 22 137864 344 7999999531 136667777666666666
Q ss_pred CccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCC-
Q 037558 100 GFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNL- 178 (518)
Q Consensus 100 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l- 178 (518)
. .+..+++|+.|+|++|.+.|.+|..++.+++|+.|+|++|.+.+.+|..++++++|++|+|++|.+.+.+|..+...
T Consensus 436 ~-~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~ 514 (623)
T PLN03150 436 N-DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514 (623)
T ss_pred H-HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhcc
Confidence 5 56666666666666666666666666666666666666666666666666666666666666666666666555432
Q ss_pred CCCCEEEccCc
Q 037558 179 SHISLLFIYDN 189 (518)
Q Consensus 179 ~~L~~L~l~~n 189 (518)
.++..+++.+|
T Consensus 515 ~~~~~l~~~~N 525 (623)
T PLN03150 515 LHRASFNFTDN 525 (623)
T ss_pred ccCceEEecCC
Confidence 23444444444
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.24 E-value=4.3e-13 Score=123.18 Aligned_cols=198 Identities=26% Similarity=0.319 Sum_probs=115.2
Q ss_pred cCCCCCccEEEccCCcccccCCcc----CcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCC
Q 037558 295 IGKMRSLSVLDLNENQFKGVLPPS----ISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGG 370 (518)
Q Consensus 295 ~~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 370 (518)
+..++.|++++||+|.+....+.. +.++..|++|.|.+|.+...--..++ ..|..+. .++. ...-+
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~-~al~~l~--~~kk-------~~~~~ 157 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG-RALFELA--VNKK-------AASKP 157 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH-HHHHHHH--HHhc-------cCCCc
Confidence 344567777777777765444332 34566777777777765411000000 1111111 1111 12224
Q ss_pred CccEEecCCCcCccc----cChhhhcCCCCcEEEcccCcccc----ccChhhhCCCCCCEEecccCccccc----cCccc
Q 037558 371 ALEIFTVSENHFQGT----IPTSVRNCTSLIRVHLNGNNLTG----NISEALAIYPNLTFIDLSRNNFYGE----ISSNW 438 (518)
Q Consensus 371 ~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~ 438 (518)
+|+++...+|.+... +...+...+.|+.+.++.|.|.. .+...+..+++|+.|||++|.++.. +...+
T Consensus 158 ~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL 237 (382)
T KOG1909|consen 158 KLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKAL 237 (382)
T ss_pred ceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHh
Confidence 566666666665422 22344556777777777776652 2345667778888888888877633 23345
Q ss_pred cCCCCCCEEEccCCccccCccc----cc-cCCCCCCEEeCcCCcCccc----CCccccCCCCCCEEECcCCcc
Q 037558 439 GKCPKLDTLNVSMNNITGGIPR----EI-GNSSQLQALDLSLNHIVGE----IPKELGKLNSLTKLILRGNQR 502 (518)
Q Consensus 439 ~~~~~L~~L~ls~n~l~~~~~~----~~-~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~ 502 (518)
..+++|+.|++++|.+...-.. .+ ...++|++|++.+|.++.. +..++...+.|++|+|++|.+
T Consensus 238 ~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 238 SSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 5677788888888877643222 22 2467888888888877642 223445678888888888887
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.18 E-value=3.6e-11 Score=120.79 Aligned_cols=198 Identities=35% Similarity=0.526 Sum_probs=100.4
Q ss_pred EEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCC-CCCEEEccCccccccCCccccCCCCCcEEEcccC
Q 037558 135 FLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLS-HISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSN 213 (518)
Q Consensus 135 ~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 213 (518)
.+++..+.+. ..+..+..+..++.|++.+|.+. .++.....+. +|+.|++++|++.. +|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhh-hhhhhhccccccccccCCc
Confidence 3444444442 12222333345555555555554 3444444442 55555555555542 2234555555555555555
Q ss_pred cCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCcc
Q 037558 214 QFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPD 293 (518)
Q Consensus 214 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 293 (518)
++. .++......+.|+.|++++|.+.. +|........|+++.+++|.+. ..+..+.++.++..+.+.+|++. .++.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccc
Confidence 555 233333345555555555555544 3333333344566666655322 23344555666666666666554 2345
Q ss_pred ccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCc
Q 037558 294 EIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPP 341 (518)
Q Consensus 294 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 341 (518)
.++.+++++.|++++|.++.. +. ++...+++.|+++++.+....|.
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred hhccccccceecccccccccc-cc-ccccCccCEEeccCccccccchh
Confidence 555666666666666666632 22 55666666666666666544433
No 26
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.18 E-value=4.4e-12 Score=114.05 Aligned_cols=134 Identities=28% Similarity=0.283 Sum_probs=98.2
Q ss_pred cCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCE
Q 037558 367 CQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDT 446 (518)
Q Consensus 367 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 446 (518)
.....|+++|+++|.++ .+.+++.-.+.++.|+++.|.+... +.+..+++|+.|||++|.++.. ..+-..+-+.++
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKT 356 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhh-hhhHhhhcCEee
Confidence 33456788888888776 5666677778888888888888744 3377788888888888887632 233345678888
Q ss_pred EEccCCccccCccccccCCCCCCEEeCcCCcCcc-cCCccccCCCCCCEEECcCCcccccc
Q 037558 447 LNVSMNNITGGIPREIGNSSQLQALDLSLNHIVG-EIPKELGKLNSLTKLILRGNQRAVTL 506 (518)
Q Consensus 447 L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~i 506 (518)
|.+++|.+.. -..++.+-+|..||+++|++.. .-...++++|.|+.+.+.+|++.+.+
T Consensus 357 L~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 357 LKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred eehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 8888887752 3346777788888999888764 22356788899999999999886543
No 27
>PLN03150 hypothetical protein; Provisional
Probab=99.16 E-value=6.8e-11 Score=124.45 Aligned_cols=113 Identities=26% Similarity=0.431 Sum_probs=97.6
Q ss_pred CCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCc
Q 037558 395 SLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLS 474 (518)
Q Consensus 395 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~ 474 (518)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|++++.+|..+.++++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37788999999998888889999999999999999988888888899999999999999998899889999999999999
Q ss_pred CCcCcccCCccccCC-CCCCEEECcCCccccccC
Q 037558 475 LNHIVGEIPKELGKL-NSLTKLILRGNQRAVTLS 507 (518)
Q Consensus 475 ~n~l~~~~~~~l~~l-~~L~~L~l~~n~~~~~ip 507 (518)
+|++.|.+|..+... .++..+++.+|+..+.+|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999999999888763 467788888888766555
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.15 E-value=1.3e-12 Score=127.02 Aligned_cols=196 Identities=26% Similarity=0.453 Sum_probs=160.0
Q ss_pred CCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEE
Q 037558 105 SFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLL 184 (518)
Q Consensus 105 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L 184 (518)
.+..-...|++.|++ .++|..++.+..|+.+.+..|.+. .+|..+.++..|.+|||+.|+++ .+|..+..+ -|+.|
T Consensus 73 ~ltdt~~aDlsrNR~-~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvl 148 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRF-SELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVL 148 (722)
T ss_pred cccchhhhhcccccc-ccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeE
Confidence 455566778888988 467888888999999999999998 79999999999999999999998 778888776 58999
Q ss_pred EccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCc
Q 037558 185 FIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFT 264 (518)
Q Consensus 185 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 264 (518)
-+++|+++ .+|..++....|..|+.+.|.+. .+|..++.+.+|+.|.+..|.+.. +|..+.. -.|..||++.|++.
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~-LpLi~lDfScNkis 224 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCS-LPLIRLDFSCNKIS 224 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhC-CceeeeecccCcee
Confidence 99999987 67888888899999999999987 678888999999999999998876 6666764 46889999999988
Q ss_pred cCCcccccCCCCCcEEEccCCcCcccCccccCC---CCCccEEEccCCc
Q 037558 265 GYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGK---MRSLSVLDLNENQ 310 (518)
Q Consensus 265 ~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~---l~~L~~L~l~~n~ 310 (518)
.+|-.|.++..|++|-|.+|.+. .-|..+.. ..-.++|+..-++
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 68888999999999999999887 44443332 2334566666653
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.14 E-value=3.5e-11 Score=129.34 Aligned_cols=104 Identities=22% Similarity=0.229 Sum_probs=48.9
Q ss_pred CCcEEeCCCCC--CcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEE
Q 037558 108 RLAYLDLTGSG--LFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLF 185 (518)
Q Consensus 108 ~L~~L~L~~~~--~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 185 (518)
+|++|-+..|. +.....+.|..++.|++||+++|.-.+.+|..++.+.+||+|+++.+.+. .+|..+.++..|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 45555444443 22222223444555555555554444455555555555555555555554 4455555555555555
Q ss_pred ccCccccccCCccccCCCCCcEEEccc
Q 037558 186 IYDNLFSGFIPSDIGNSKSIFNLDLSS 212 (518)
Q Consensus 186 l~~n~~~~~~~~~~~~~~~L~~L~l~~ 212 (518)
+.++.....+|.....+.+|++|.+..
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred cccccccccccchhhhcccccEEEeec
Confidence 554443333333333444555554443
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.13 E-value=3.3e-12 Score=117.40 Aligned_cols=136 Identities=20% Similarity=0.225 Sum_probs=84.0
Q ss_pred cCCCCCcEEEcccCcCCCC----cchhccCCCCCcEEEcccCcCCcc----ccccccCCCCCCEeeCcCCCCccC----C
Q 037558 200 GNSKSIFNLDLSSNQFSGP----IPLFFGNLSNLKSLYLYGNSLSSP----ILSSLGKFKSLIDLQLNENQFTGY----I 267 (518)
Q Consensus 200 ~~~~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~----~ 267 (518)
..-++|+.+...+|.+... +...|...+.|+.+.++.|.|... ....+..+++|+.|++.+|.++.. +
T Consensus 154 ~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L 233 (382)
T KOG1909|consen 154 ASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL 233 (382)
T ss_pred CCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH
Confidence 3446677777777776532 223455667777777777776532 224556677788888887777642 3
Q ss_pred cccccCCCCCcEEEccCCcCcccCcccc----C-CCCCccEEEccCCcccccC----CccCcCCCCCCeeecccccc
Q 037558 268 PRSFGNLTSLSTLRLSKNELFGSIPDEI----G-KMRSLSVLDLNENQFKGVL----PPSISNLTNLKELALLYNHL 335 (518)
Q Consensus 268 ~~~l~~l~~L~~L~l~~n~l~~~~p~~~----~-~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l 335 (518)
...+..+++|+.|+++.|.+.......+ . ..|.|+.+.+.+|.++..- .......+.|..|++++|.+
T Consensus 234 akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 234 AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 3445667778888888877654322222 1 2577888888888776321 11233456777777777766
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.13 E-value=7.6e-11 Score=118.49 Aligned_cols=200 Identities=36% Similarity=0.496 Sum_probs=157.2
Q ss_pred EEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCC-CCcEEEccCCCCCccCCcCCcCCCCCCEEEccCc
Q 037558 111 YLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLS-SMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDN 189 (518)
Q Consensus 111 ~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~-~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n 189 (518)
.+++..+.+... ...+..++.++.|++.+|.++ .+|....... +|++|++++|.+. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 467777665332 223555688999999999998 7888888885 9999999999987 66667888999999999999
Q ss_pred cccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcc
Q 037558 190 LFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPR 269 (518)
Q Consensus 190 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 269 (518)
++... |......+.|+.|++++|++. .+|........|+++.+++|.+.. .+..+.++.++..+.+.+|++.. .+.
T Consensus 174 ~l~~l-~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~~-~~~ 249 (394)
T COG4886 174 DLSDL-PKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLED-LPE 249 (394)
T ss_pred hhhhh-hhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCceeee-ccc
Confidence 98843 444558889999999999998 566666666779999999995333 56677888888888888888773 366
Q ss_pred cccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccC
Q 037558 270 SFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSI 319 (518)
Q Consensus 270 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l 319 (518)
.+..++++++|++++|.++. ++. ++.+.+++.+++++|.+....+...
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred hhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccchhhh
Confidence 78888999999999999884 444 7888999999999999886655443
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.12 E-value=3.2e-12 Score=124.38 Aligned_cols=189 Identities=31% Similarity=0.489 Sum_probs=119.1
Q ss_pred EEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCc
Q 037558 207 NLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNE 286 (518)
Q Consensus 207 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 286 (518)
..|++.|++. .+|..+..+..|+.+.++.|.+.. +|..++++..|.+++++.|+++ ..|..+..++ |+.|.+++|+
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCc
Confidence 3455555555 455555555555556666655543 5556666666666667666666 4566565555 7777777777
Q ss_pred CcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhh
Q 037558 287 LFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNI 366 (518)
Q Consensus 287 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~ 366 (518)
++ .+|+.++....|.+||.+.|.+. .+|..++++.+|+.|.++.|++. .+|.......|..||++.|++. .+|-.|
T Consensus 155 l~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~LpLi~lDfScNkis-~iPv~f 230 (722)
T KOG0532|consen 155 LT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLPLIRLDFSCNKIS-YLPVDF 230 (722)
T ss_pred cc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCceeeeecccCcee-ecchhh
Confidence 66 66666776677777777777776 56666777777777777777766 5555555666777777777765 456667
Q ss_pred cCCCCccEEecCCCcCccccChhhhc---CCCCcEEEcccC
Q 037558 367 CQGGALEIFTVSENHFQGTIPTSVRN---CTSLIRVHLNGN 404 (518)
Q Consensus 367 ~~~~~L~~L~l~~n~l~~~~~~~~~~---l~~L~~L~L~~n 404 (518)
..++.|++|.|.+|.++ ..|..++. ..-.++|+...|
T Consensus 231 r~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 231 RKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 77777777777777776 34443321 222344555555
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=7.9e-12 Score=118.10 Aligned_cols=208 Identities=23% Similarity=0.251 Sum_probs=114.4
Q ss_pred cCCCCCCEEECCCCCCCcCCC--ccCCCCCCCcEEEccCCCCCcc--CCcCCcCCCCCCEEEccCccccccCCcc-ccCC
Q 037558 128 GLLSHLKFLFIDTNKLDGSIP--PEVGQLSSMEVFFLCSNYLNGS--VPPSLGNLSHISLLFIYDNLFSGFIPSD-IGNS 202 (518)
Q Consensus 128 ~~l~~L~~L~l~~n~~~~~~p--~~l~~l~~L~~L~L~~n~~~~~--~p~~l~~l~~L~~L~l~~n~~~~~~~~~-~~~~ 202 (518)
+++++|+.+.|.++.+. ..+ .....|++++.|||++|-+..- +-.....+++|+.|+++.|.+....... -..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 45666666666666654 222 2345566666666666654421 1123445666666666666654321111 1245
Q ss_pred CCCcEEEcccCcCCCCc-chhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCC-cccccCCCCCcEE
Q 037558 203 KSIFNLDLSSNQFSGPI-PLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYI-PRSFGNLTSLSTL 280 (518)
Q Consensus 203 ~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L 280 (518)
+.|+.|.++.|.++... ...+..+|+|+.|++.+|...........-+..|+.|+|++|++.... -...+.++.|..|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 56667777777666322 223345677777777777422222223334456777777777665321 1234566777777
Q ss_pred EccCCcCccc-Cccc-----cCCCCCccEEEccCCccccc-CCccCcCCCCCCeeeccccccc
Q 037558 281 RLSKNELFGS-IPDE-----IGKMRSLSVLDLNENQFKGV-LPPSISNLTNLKELALLYNHLS 336 (518)
Q Consensus 281 ~l~~n~l~~~-~p~~-----~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~ 336 (518)
+++.+.+... .|+. ...+++|++|++..|++... ....+..+++|++|.+..|.++
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 7777766532 2222 23467778888887777421 1123445567777777666665
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=3.5e-11 Score=113.76 Aligned_cols=159 Identities=19% Similarity=0.181 Sum_probs=81.0
Q ss_pred cCCCCCCEeeCcCCCCccCCc-ccccCCCCCcEEEccCCcCcccCc--cccCCCCCccEEEccCCcccccCCc-cCcCCC
Q 037558 248 GKFKSLIDLQLNENQFTGYIP-RSFGNLTSLSTLRLSKNELFGSIP--DEIGKMRSLSVLDLNENQFKGVLPP-SISNLT 323 (518)
Q Consensus 248 ~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p--~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~ 323 (518)
+++.+|+.+.+.++.+..... .....+++++.|++++|-+....| .....+|+|+.|+++.|.+...... .-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 455677777887776552111 245567788888888776553211 2234577777778877776522211 112456
Q ss_pred CCCeeecccccccccCCccc--ccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccC--hhhhcCCCCcEE
Q 037558 324 NLKELALLYNHLSGSIPPSL--GNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIP--TSVRNCTSLIRV 399 (518)
Q Consensus 324 ~L~~L~l~~n~l~~~~p~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L 399 (518)
.|+.|.++.|.++..-.... ..++++.|+++.|............+..|+.|+|++|.+-. .+ .....++.|+.|
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhh
Confidence 66777777776652211111 12556666666654222222222223345555555554431 11 122344555555
Q ss_pred EcccCccc
Q 037558 400 HLNGNNLT 407 (518)
Q Consensus 400 ~L~~n~l~ 407 (518)
+++.|.+.
T Consensus 277 nls~tgi~ 284 (505)
T KOG3207|consen 277 NLSSTGIA 284 (505)
T ss_pred hccccCcc
Confidence 55555444
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=1.3e-10 Score=100.36 Aligned_cols=100 Identities=28% Similarity=0.290 Sum_probs=30.5
Q ss_pred CCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccc-cCCCCCCEEEccCCccccC-ccccccCCCCCCE
Q 037558 393 CTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNW-GKCPKLDTLNVSMNNITGG-IPREIGNSSQLQA 470 (518)
Q Consensus 393 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~~~~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~ 470 (518)
+.+|+.|++++|+|+.. +.+..+++|++|++++|+++.. ...+ ..+++|++|++++|+|... .-..+..+++|+.
T Consensus 41 l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp -TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred hcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence 44555555555555532 2344455555555555555522 2222 2355555555555555431 1123445556666
Q ss_pred EeCcCCcCcccCCc----cccCCCCCCEEE
Q 037558 471 LDLSLNHIVGEIPK----ELGKLNSLTKLI 496 (518)
Q Consensus 471 L~L~~n~l~~~~~~----~l~~l~~L~~L~ 496 (518)
|++.+|++... +. .+..+|+|+.||
T Consensus 118 L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 118 LSLEGNPVCEK-KNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EE-TT-GGGGS-TTHHHHHHHH-TT-SEET
T ss_pred eeccCCcccch-hhHHHHHHHHcChhheeC
Confidence 66666655532 21 234456666554
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.04 E-value=6.4e-11 Score=106.68 Aligned_cols=132 Identities=21% Similarity=0.259 Sum_probs=67.9
Q ss_pred ccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCcccccccCcE
Q 037558 271 FGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRE 350 (518)
Q Consensus 271 l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~ 350 (518)
+..++.|+++++++|.++ .+.++..-.|.++.|++++|.+... +.+..+++|.+|++++|.++. +.
T Consensus 280 ~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~---------- 345 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CV---------- 345 (490)
T ss_pred cchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hh----------
Confidence 344556666666666665 4445555566666666666666522 235556666666666665542 11
Q ss_pred EEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCcccccc-ChhhhCCCCCCEEecccCc
Q 037558 351 LLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNI-SEALAIYPNLTFIDLSRNN 429 (518)
Q Consensus 351 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~ 429 (518)
.+--.+.+.+.|.+++|.+. ....+.++.+|..|++++|+|.... ...++++|.|+.+.|.+|.
T Consensus 346 -------------Gwh~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 346 -------------GWHLKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred -------------hhHhhhcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 11222334444444444442 1133445555556666666554221 1234555555555555555
Q ss_pred cc
Q 037558 430 FY 431 (518)
Q Consensus 430 l~ 431 (518)
+.
T Consensus 411 l~ 412 (490)
T KOG1259|consen 411 LA 412 (490)
T ss_pred cc
Confidence 54
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.98 E-value=4.5e-10 Score=120.85 Aligned_cols=83 Identities=30% Similarity=0.291 Sum_probs=35.7
Q ss_pred CcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCC
Q 037558 175 LGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLI 254 (518)
Q Consensus 175 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 254 (518)
|..++.|++||+++|.--+.+|..++.+-+|++|+++++.+. .+|..++++..|.+|++..+.....++.....+.+|+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 334444444444444433444444444444444444444444 3444444444444444444333222233333344444
Q ss_pred EeeC
Q 037558 255 DLQL 258 (518)
Q Consensus 255 ~L~l 258 (518)
+|.+
T Consensus 646 ~L~l 649 (889)
T KOG4658|consen 646 VLRL 649 (889)
T ss_pred EEEe
Confidence 4444
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.98 E-value=3.6e-10 Score=97.58 Aligned_cols=124 Identities=27% Similarity=0.272 Sum_probs=45.5
Q ss_pred cCcEEEccCccCcccCchhhc-CCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhh-hCCCCCCEEe
Q 037558 347 ILRELLLSGNHFAGYLPYNIC-QGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEAL-AIYPNLTFID 424 (518)
Q Consensus 347 ~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~ 424 (518)
.+++|++++|.+...- .+. .+.+|+.|++++|.+.. + +.+..++.|++|++++|+|+.. .+.+ ..+|+|++|+
T Consensus 20 ~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred cccccccccccccccc--chhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEE
Confidence 3455555555544321 222 34567777777777763 2 3466778888888888888743 3333 4578888888
Q ss_pred cccCcccccc-CccccCCCCCCEEEccCCccccCc---cccccCCCCCCEEeCcC
Q 037558 425 LSRNNFYGEI-SSNWGKCPKLDTLNVSMNNITGGI---PREIGNSSQLQALDLSL 475 (518)
Q Consensus 425 L~~n~l~~~~-~~~~~~~~~L~~L~ls~n~l~~~~---~~~~~~l~~L~~L~L~~ 475 (518)
+++|++.... -..+..+++|+.|++.+|++...- ...+..+|+|+.||-..
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 8888876432 245667888888888888887421 12345778888887643
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.82 E-value=4.4e-10 Score=113.22 Aligned_cols=196 Identities=28% Similarity=0.341 Sum_probs=114.9
Q ss_pred CCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEE
Q 037558 105 SFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLL 184 (518)
Q Consensus 105 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L 184 (518)
.+..++.+++..|.+.. +...+..+.+|++|++.+|.+. .+...+..+++|++|++++|.|... ..+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence 45556666666666543 3334667777888888888776 3444466777778888887777643 345566667777
Q ss_pred EccCccccccCCccccCCCCCcEEEcccCcCCCCcc-hhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCC
Q 037558 185 FIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIP-LFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQF 263 (518)
Q Consensus 185 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 263 (518)
++.+|.+... ..+..++.|+.+++++|.+...-+ . ...+.+++.+.+.+|.+.. ...+..+..+..+++..|.+
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccc
Confidence 7777777643 335556777777777777764333 1 3556667777777776553 22233333444445555555
Q ss_pred ccCCcccccCCCC--CcEEEccCCcCcccCccccCCCCCccEEEccCCccc
Q 037558 264 TGYIPRSFGNLTS--LSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFK 312 (518)
Q Consensus 264 ~~~~~~~l~~l~~--L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 312 (518)
+..-+ +..+.. |+.+++++|++. ..+..+..+.++..+++.+|.+.
T Consensus 221 ~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 221 SKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred eeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccc
Confidence 42211 112222 666666666655 23233445566666666666655
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.79 E-value=4.2e-09 Score=74.66 Aligned_cols=40 Identities=40% Similarity=0.555 Sum_probs=14.7
Q ss_pred cccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCC
Q 037558 437 NWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLN 476 (518)
Q Consensus 437 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n 476 (518)
.|.++++|++|++++|.+....+..|..+++|++|++++|
T Consensus 20 ~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 20 SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3333333333333333333322333333333333333333
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.79 E-value=3.5e-09 Score=75.06 Aligned_cols=61 Identities=33% Similarity=0.455 Sum_probs=56.1
Q ss_pred CCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCcc
Q 037558 442 PKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQR 502 (518)
Q Consensus 442 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 502 (518)
|+|++|++++|++....+..|..+++|++|++++|++....+..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 5789999999999966667899999999999999999988888999999999999999985
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.76 E-value=8.1e-10 Score=111.26 Aligned_cols=265 Identities=26% Similarity=0.282 Sum_probs=145.2
Q ss_pred CCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEcc
Q 037558 204 SIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLS 283 (518)
Q Consensus 204 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 283 (518)
.++.++...+.....--. ...+..++.+.+..|.+.. +-..+..+.+++.|++.+|++.... ..+..+++|++|+++
T Consensus 50 ~~~~~~~~~~~~~~~~~~-~~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls 126 (414)
T KOG0531|consen 50 DLEEIDLIFNLDGSDEDL-VESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLS 126 (414)
T ss_pred hhhhhcchhccccchhhh-HHHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheecc
Confidence 444455544433321111 1345666777777777665 3344677788888888888887432 226677888888888
Q ss_pred CCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCc-ccccccCcEEEccCccCcccC
Q 037558 284 KNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPP-SLGNLILRELLLSGNHFAGYL 362 (518)
Q Consensus 284 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~~~L~~L~l~~n~~~~~~ 362 (518)
+|.++... .+..++.|+.|++++|.+... ..+..++.|+.+++++|.+...-+. .-....++.+++++|.+....
T Consensus 127 ~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~ 202 (414)
T KOG0531|consen 127 FNKITKLE--GLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE 202 (414)
T ss_pred cccccccc--chhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc
Confidence 88887443 255667788888888888733 2445577888888888877643321 122256666667766654332
Q ss_pred chhhcCCCCccEEecCCCcCccccChhhhcCCC--CcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccC
Q 037558 363 PYNICQGGALEIFTVSENHFQGTIPTSVRNCTS--LIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGK 440 (518)
Q Consensus 363 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 440 (518)
.+.....+..+++..|.+...-+ +..+.. |+.+++++|++... +..+..+..+..|++.+|++...- .+..
T Consensus 203 --~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~~--~~~~ 275 (414)
T KOG0531|consen 203 --GLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNLE--GLER 275 (414)
T ss_pred --chHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccccc-cccccccccccccchhhccccccc--cccc
Confidence 12222333344555555542211 111222 56666666666522 234455556666666666654321 1233
Q ss_pred CCCCCEEEccCCccccC---cccc-ccCCCCCCEEeCcCCcCcccC
Q 037558 441 CPKLDTLNVSMNNITGG---IPRE-IGNSSQLQALDLSLNHIVGEI 482 (518)
Q Consensus 441 ~~~L~~L~ls~n~l~~~---~~~~-~~~l~~L~~L~L~~n~l~~~~ 482 (518)
.+.+..+....|.+... .... ....+.++.+.+..|+.....
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 276 LPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred cchHHHhccCcchhcchhhhhccccccccccccccccccCcccccc
Confidence 44455555555554421 1111 234455556666666554433
No 43
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.59 E-value=7.1e-08 Score=62.50 Aligned_cols=42 Identities=33% Similarity=0.858 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCcCCCCCCCCCCCCCccCceeeC
Q 037558 33 NEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCAWYGISCN 79 (518)
Q Consensus 33 ~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~c~w~g~~c~ 79 (518)
++|++||++||+++..++...+.+|+... ..+||.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~-----~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSS-----DSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT-------S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcC-----CCCCeeeccEEeC
Confidence 67999999999999876677899998741 2589999999995
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=3.3e-08 Score=89.45 Aligned_cols=82 Identities=21% Similarity=0.255 Sum_probs=47.7
Q ss_pred CCCCCEEecccCccccc-cCccccCCCCCCEEEccCCcccc-CccccccCCCCCCEEeCcCCcCcccCCc------cccC
Q 037558 417 YPNLTFIDLSRNNFYGE-ISSNWGKCPKLDTLNVSMNNITG-GIPREIGNSSQLQALDLSLNHIVGEIPK------ELGK 488 (518)
Q Consensus 417 l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~------~l~~ 488 (518)
+|++..+.+..|.+... .......+|.+..|+++.|+|.. ...+++..+++|..|+++++++.+.+.. -++.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR 277 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR 277 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence 45666666666655432 23344556666677777776652 1224456677777777777776643332 2456
Q ss_pred CCCCCEEECc
Q 037558 489 LNSLTKLILR 498 (518)
Q Consensus 489 l~~L~~L~l~ 498 (518)
+++++.|+=+
T Consensus 278 L~~v~vLNGs 287 (418)
T KOG2982|consen 278 LTKVQVLNGS 287 (418)
T ss_pred ccceEEecCc
Confidence 7777776543
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.46 E-value=2.1e-08 Score=89.45 Aligned_cols=183 Identities=16% Similarity=0.119 Sum_probs=108.4
Q ss_pred CCCCCcEEEccCCCCCccCCcC----CcCCCCCCEEEccCccccccCC-------------ccccCCCCCcEEEcccCcC
Q 037558 153 QLSSMEVFFLCSNYLNGSVPPS----LGNLSHISLLFIYDNLFSGFIP-------------SDIGNSKSIFNLDLSSNQF 215 (518)
Q Consensus 153 ~l~~L~~L~L~~n~~~~~~p~~----l~~l~~L~~L~l~~n~~~~~~~-------------~~~~~~~~L~~L~l~~n~~ 215 (518)
+||+|+..+||.|.+....|+. +++-+.|.+|.+++|++.-... .-..+-|.|+......|++
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 4555555555555554333332 3445566666666665432111 1133567788888888877
Q ss_pred CCCcc-----hhccCCCCCcEEEcccCcCCccc-----cccccCCCCCCEeeCcCCCCccCC----cccccCCCCCcEEE
Q 037558 216 SGPIP-----LFFGNLSNLKSLYLYGNSLSSPI-----LSSLGKFKSLIDLQLNENQFTGYI----PRSFGNLTSLSTLR 281 (518)
Q Consensus 216 ~~~~~-----~~l~~l~~L~~L~l~~n~~~~~~-----~~~l~~l~~L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~ 281 (518)
.. .+ ..+.+-.+|+++.+.+|.|.... ...+..+.+|+.|++..|.++... ...+..++.|++|.
T Consensus 170 en-gs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 170 EN-GSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred cc-CcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 52 22 23344568888888888775321 123445678999999988877432 33455677789999
Q ss_pred ccCCcCcccCccc----cC--CCCCccEEEccCCcccccCCcc-------CcCCCCCCeeeccccccc
Q 037558 282 LSKNELFGSIPDE----IG--KMRSLSVLDLNENQFKGVLPPS-------ISNLTNLKELALLYNHLS 336 (518)
Q Consensus 282 l~~n~l~~~~p~~----~~--~l~~L~~L~l~~n~l~~~~~~~-------l~~l~~L~~L~l~~n~l~ 336 (518)
+..|-++...... +. ..|+|..|...+|...+.+... -..+|-|..|.+.+|.+.
T Consensus 249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred ccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 9888766432222 21 2577888888888776543221 134556666666666654
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.32 E-value=1.7e-08 Score=101.58 Aligned_cols=180 Identities=22% Similarity=0.190 Sum_probs=85.4
Q ss_pred ccccCCCCCccEEEccCCcccccCCccCcCC-CCCCeeeccccc------c---cccCCcccccccCcEEEccCccCccc
Q 037558 292 PDEIGKMRSLSVLDLNENQFKGVLPPSISNL-TNLKELALLYNH------L---SGSIPPSLGNLILRELLLSGNHFAGY 361 (518)
Q Consensus 292 p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~------l---~~~~p~~~~~~~L~~L~l~~n~~~~~ 361 (518)
|-.+..+.+|++|.+.++.+... ..+..+ ..|++|.-.+.- + -|.+...+....|.+.+++.|.+. .
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L 178 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h
Confidence 55666778889998888887621 111111 123333221110 0 011222222234555555555544 2
Q ss_pred CchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCC
Q 037558 362 LPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKC 441 (518)
Q Consensus 362 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 441 (518)
+..++.-++.++.|+|++|+++.. +.+..+++|+.|||+.|.+....--...++. |..|.+++|.++.. ..+.++
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~L 253 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENL 253 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhh
Confidence 233444445566666666665522 2455566666666666655533222223333 55666666655422 124455
Q ss_pred CCCCEEEccCCccccCcc-ccccCCCCCCEEeCcCCcCc
Q 037558 442 PKLDTLNVSMNNITGGIP-REIGNSSQLQALDLSLNHIV 479 (518)
Q Consensus 442 ~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~ 479 (518)
.+|+.||+++|-+.+.-- ..+..+..|.+|.|.+|++.
T Consensus 254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 555666666655543110 11233445555555555543
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.32 E-value=7.6e-08 Score=86.00 Aligned_cols=246 Identities=20% Similarity=0.210 Sum_probs=126.7
Q ss_pred cCCCCCCEeeCcCCCCccCCcc----cccCCCCCcEEEccCCcCc---ccCc-------cccCCCCCccEEEccCCcccc
Q 037558 248 GKFKSLIDLQLNENQFTGYIPR----SFGNLTSLSTLRLSKNELF---GSIP-------DEIGKMRSLSVLDLNENQFKG 313 (518)
Q Consensus 248 ~~l~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~l~~n~l~---~~~p-------~~~~~l~~L~~L~l~~n~l~~ 313 (518)
..+..+..+++++|.|...... .+.+-.+|+..+++.-... ..++ ..+.+||.|+.+++|.|.+..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 3456778888888887654333 3344566676666653111 1122 234566777777777777765
Q ss_pred cCCcc----CcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccCh-
Q 037558 314 VLPPS----ISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPT- 388 (518)
Q Consensus 314 ~~~~~----l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~- 388 (518)
..|.. +++-..|++|.+++|.+...--.-++ ..|.+ +..|+ ....-+.|+.+....|++..-...
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig-kal~~--la~nK-------Kaa~kp~Le~vicgrNRlengs~~~ 176 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIG-KALFH--LAYNK-------KAADKPKLEVVICGRNRLENGSKEL 176 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHH-HHHHH--HHHHh-------hhccCCCceEEEeccchhccCcHHH
Confidence 55543 34455666777766654310000000 00000 00110 112235566666666665421111
Q ss_pred ---hhhcCCCCcEEEcccCccccc-----cChhhhCCCCCCEEecccCccccc----cCccccCCCCCCEEEccCCcccc
Q 037558 389 ---SVRNCTSLIRVHLNGNNLTGN-----ISEALAIYPNLTFIDLSRNNFYGE----ISSNWGKCPKLDTLNVSMNNITG 456 (518)
Q Consensus 389 ---~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~ls~n~l~~ 456 (518)
.+..-..|+.+.+..|.|.-. +...+..+.+|+.|||++|.++-. +...+..++.|+.|.+.+|-++.
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 122225677777777766522 122334567777777777776532 12233445667777777776654
Q ss_pred Cccc----ccc--CCCCCCEEeCcCCcCcccCCcc-----c--cCCCCCCEEECcCCccc
Q 037558 457 GIPR----EIG--NSSQLQALDLSLNHIVGEIPKE-----L--GKLNSLTKLILRGNQRA 503 (518)
Q Consensus 457 ~~~~----~~~--~l~~L~~L~L~~n~l~~~~~~~-----l--~~l~~L~~L~l~~n~~~ 503 (518)
.-.. .|. ..++|+.|...+|.+.+.+... + ..+|-|..|.+.||.+.
T Consensus 257 ~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 257 EGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred ccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 3222 221 3466777777777655432221 1 24566666666777664
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.7e-08 Score=91.27 Aligned_cols=176 Identities=23% Similarity=0.181 Sum_probs=91.2
Q ss_pred CCccEEEccCCccccc-CCccCcCCCCCCeeecccccccccCCccccc-ccCcEEEccCccCccc--CchhhcCCCCccE
Q 037558 299 RSLSVLDLNENQFKGV-LPPSISNLTNLKELALLYNHLSGSIPPSLGN-LILRELLLSGNHFAGY--LPYNICQGGALEI 374 (518)
Q Consensus 299 ~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~ 374 (518)
+.|+++|++...++.. .-..+..|.+|+.|.+.++.+...+...++. .+|+.++++.+.-... ..-.+..++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 3588888888777632 2234567788888888888877665555544 6777777777643221 1223445566666
Q ss_pred EecCCCcCccccCh-hhh-cCCCCcEEEcccCccc--c-ccChhhhCCCCCCEEecccCc-cccccCccccCCCCCCEEE
Q 037558 375 FTVSENHFQGTIPT-SVR-NCTSLIRVHLNGNNLT--G-NISEALAIYPNLTFIDLSRNN-FYGEISSNWGKCPKLDTLN 448 (518)
Q Consensus 375 L~l~~n~l~~~~~~-~~~-~l~~L~~L~L~~n~l~--~-~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~ 448 (518)
|+++.|.+...... .+. --++|+.|+++++.-. . .+.--...+|+|..|||++|. ++......+.+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 66666644322111 111 1245555566655211 1 111222345555555555543 2222222344455555555
Q ss_pred ccCCccccCcccc---ccCCCCCCEEeCcCC
Q 037558 449 VSMNNITGGIPRE---IGNSSQLQALDLSLN 476 (518)
Q Consensus 449 ls~n~l~~~~~~~---~~~l~~L~~L~L~~n 476 (518)
++.|.. .+|.. +...|+|.+||+-++
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 555542 23332 234455555555554
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.30 E-value=8.7e-09 Score=103.61 Aligned_cols=156 Identities=24% Similarity=0.210 Sum_probs=74.7
Q ss_pred cCCCCCCCcEEeCCCCCCccc---C------Ccccc----------------------CCCCCCEEECCCCCCCcCCCcc
Q 037558 102 SFSSFPRLAYLDLTGSGLFGT---I------PPEVG----------------------LLSHLKFLFIDTNKLDGSIPPE 150 (518)
Q Consensus 102 ~l~~l~~L~~L~L~~~~~~~~---~------~~~~~----------------------~l~~L~~L~l~~n~~~~~~p~~ 150 (518)
.+..|..||+|.+.++.+... . ..-|+ ....|...+.++|.+. .+-.+
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~mD~S 182 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-LMDES 182 (1096)
T ss_pred eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-hHHHH
Confidence 678888899999988876421 0 00000 0123444444555444 33334
Q ss_pred CCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCc
Q 037558 151 VGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLK 230 (518)
Q Consensus 151 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 230 (518)
+.-++.|+.|||++|++... ..+..+++|++|||++|.+....--....+. |+.|.+++|.++.. ..+.++.+|+
T Consensus 183 Lqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~ 257 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLY 257 (1096)
T ss_pred HHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhhhhhh
Confidence 44455555555555555422 2455555555555555555432222222333 55555555555421 2244555555
Q ss_pred EEEcccCcCCccc-cccccCCCCCCEeeCcCCCC
Q 037558 231 SLYLYGNSLSSPI-LSSLGKFKSLIDLQLNENQF 263 (518)
Q Consensus 231 ~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~ 263 (518)
.|++++|-+.+.- ...+..+..|+.|.|.+|.+
T Consensus 258 ~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 258 GLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 5555555443311 11222334455555555544
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.3e-08 Score=91.97 Aligned_cols=178 Identities=24% Similarity=0.242 Sum_probs=96.4
Q ss_pred CCCEeeCcCCCCccC-CcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCc-ccccCC-ccCcCCCCCCee
Q 037558 252 SLIDLQLNENQFTGY-IPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQ-FKGVLP-PSISNLTNLKEL 328 (518)
Q Consensus 252 ~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~-~~l~~l~~L~~L 328 (518)
.++++|+++..++.. .-..+..+.+|+.|.+.++++.+.+...+++-.+|+.++++.+. ++.... -.+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466667766655421 11224456677777777777766666666667777777777653 321111 134566777777
Q ss_pred ecccccccccCCcc-ccc--ccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccC-
Q 037558 329 ALLYNHLSGSIPPS-LGN--LILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGN- 404 (518)
Q Consensus 329 ~l~~n~l~~~~p~~-~~~--~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n- 404 (518)
+++-|.+....... ... .+++.|+++++.-. -....+..-..++++|..|||++|
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn---------------------l~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN---------------------LQKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhh---------------------hhhhHHHHHHHhCCceeeecccccc
Confidence 77776554332111 111 44555555543210 000011122345666666676665
Q ss_pred ccccccChhhhCCCCCCEEecccCccccccCc---cccCCCCCCEEEccCC
Q 037558 405 NLTGNISEALAIYPNLTFIDLSRNNFYGEISS---NWGKCPKLDTLNVSMN 452 (518)
Q Consensus 405 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~L~ls~n 452 (518)
.++......+.+++.|++|.++.|.. .+|. .+...|+|.+|++-++
T Consensus 325 ~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 325 MLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 34444445566667777777777654 2232 2455677777777665
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=1.8e-07 Score=84.69 Aligned_cols=86 Identities=28% Similarity=0.317 Sum_probs=48.9
Q ss_pred CCCCCEeeCcCCCCcc--CCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCC-ccCcCCCCCC
Q 037558 250 FKSLIDLQLNENQFTG--YIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLP-PSISNLTNLK 326 (518)
Q Consensus 250 l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~ 326 (518)
++.++.+++.+|.++. .+...+.++|.|+.|+++.|++...+...-....+|++|-+.+..+.-... ..+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 3456666666666552 222334567777777777777654332211344567777777666542222 2345667777
Q ss_pred eeecccccc
Q 037558 327 ELALLYNHL 335 (518)
Q Consensus 327 ~L~l~~n~l 335 (518)
.|+++.|++
T Consensus 150 elHmS~N~~ 158 (418)
T KOG2982|consen 150 ELHMSDNSL 158 (418)
T ss_pred hhhhccchh
Confidence 777777744
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.13 E-value=1.2e-07 Score=76.03 Aligned_cols=84 Identities=23% Similarity=0.347 Sum_probs=40.4
Q ss_pred CCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeC
Q 037558 394 TSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDL 473 (518)
Q Consensus 394 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L 473 (518)
..|+..+|++|.+....+.....++.++.+++++|.++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++-.|+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 34444455555554333333334445555555555554 33444555555555555555554 34444444555555555
Q ss_pred cCCcCc
Q 037558 474 SLNHIV 479 (518)
Q Consensus 474 ~~n~l~ 479 (518)
.+|...
T Consensus 131 ~~na~~ 136 (177)
T KOG4579|consen 131 PENARA 136 (177)
T ss_pred CCCccc
Confidence 555444
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.06 E-value=2.3e-07 Score=74.41 Aligned_cols=135 Identities=24% Similarity=0.270 Sum_probs=95.2
Q ss_pred CcEEEccCccCcc--cCchhhcCCCCccEEecCCCcCccccChhhh-cCCCCcEEEcccCccccccChhhhCCCCCCEEe
Q 037558 348 LRELLLSGNHFAG--YLPYNICQGGALEIFTVSENHFQGTIPTSVR-NCTSLIRVHLNGNNLTGNISEALAIYPNLTFID 424 (518)
Q Consensus 348 L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 424 (518)
+-.+++++|++.. ..+..+.....|...++++|.+. .+|..|. .++.++.+++++|+|. .+|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 4556677776542 23445566677888899999998 5555554 5678999999999999 5566699999999999
Q ss_pred cccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCccc
Q 037558 425 LSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKEL 486 (518)
Q Consensus 425 L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 486 (518)
++.|.+. ..|..+..+.++-.|+..+|.+. +++..+..-...-..++.++++.+.-+..+
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~kl 166 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKL 166 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccc
Confidence 9999998 55666666888999999999887 555443322233344555566665555433
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.84 E-value=1.9e-05 Score=51.15 Aligned_cols=36 Identities=42% Similarity=0.621 Sum_probs=15.6
Q ss_pred CCCEEEccCCccccCccccccCCCCCCEEeCcCCcCc
Q 037558 443 KLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIV 479 (518)
Q Consensus 443 ~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 479 (518)
+|++|++++|+++ .+|..+.++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 33333444444444444444444
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.79 E-value=1.9e-05 Score=51.15 Aligned_cols=36 Identities=28% Similarity=0.546 Sum_probs=16.8
Q ss_pred CCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCC
Q 037558 132 HLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLN 168 (518)
Q Consensus 132 ~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~ 168 (518)
+|++|++++|+++ .+|..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4455555555554 34444455555555555555443
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.74 E-value=0.00011 Score=71.78 Aligned_cols=136 Identities=16% Similarity=0.239 Sum_probs=72.6
Q ss_pred cCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccE
Q 037558 295 IGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEI 374 (518)
Q Consensus 295 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 374 (518)
+..+.+++.|++++|.++ .+|. -.++|+.|.++++.-...+|..+ ..+|+.|++++|.....+| ..|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP------~sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLP------ESVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcccccccc------cccce
Confidence 445678889999988777 4552 23468888888754433555433 3567788887774333344 24566
Q ss_pred EecCCCcCc--cccChhhhcCCCCcEEEcccCccc--cccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEcc
Q 037558 375 FTVSENHFQ--GTIPTSVRNCTSLIRVHLNGNNLT--GNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVS 450 (518)
Q Consensus 375 L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls 450 (518)
|++..+... +.+| ++|+.|.+.+++-. ..++..+ .++|++|++++|... ..|..+ ..+|+.|.++
T Consensus 117 L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~L--P~SLk~L~ls 185 (426)
T PRK15386 117 LEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKL--PESLQSITLH 185 (426)
T ss_pred EEeCCCCCcccccCc------chHhheecccccccccccccccc--CCcccEEEecCCCcc-cCcccc--cccCcEEEec
Confidence 666554332 1222 24555555432211 0011111 146777777666644 223222 2466666666
Q ss_pred CC
Q 037558 451 MN 452 (518)
Q Consensus 451 ~n 452 (518)
.+
T Consensus 186 ~n 187 (426)
T PRK15386 186 IE 187 (426)
T ss_pred cc
Confidence 55
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.72 E-value=8e-05 Score=64.21 Aligned_cols=104 Identities=19% Similarity=0.236 Sum_probs=63.1
Q ss_pred CccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCcccccc-CccccCCCCCCEEEc
Q 037558 371 ALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEI-SSNWGKCPKLDTLNV 449 (518)
Q Consensus 371 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~l 449 (518)
....+++++|.+. -...|..++.|..|.+.+|+|+..-|.--..+++|.+|.|.+|.+.... -..+..||+|++|.+
T Consensus 43 ~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 4455666666554 1234566677777777777777665555555667777777777665331 223556777777777
Q ss_pred cCCccccCcc---ccccCCCCCCEEeCcCC
Q 037558 450 SMNNITGGIP---REIGNSSQLQALDLSLN 476 (518)
Q Consensus 450 s~n~l~~~~~---~~~~~l~~L~~L~L~~n 476 (518)
-+|++...-- ..+..+++|++||.++=
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 7777653211 23456677777776654
No 58
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.70 E-value=1e-06 Score=83.67 Aligned_cols=136 Identities=19% Similarity=0.255 Sum_probs=72.4
Q ss_pred CCCCccEEecCCCcCccc-cChhh-hcCCCCcEEEcccCc-cccccChhh-hCCCCCCEEecccCccc--cccCccccCC
Q 037558 368 QGGALEIFTVSENHFQGT-IPTSV-RNCTSLIRVHLNGNN-LTGNISEAL-AIYPNLTFIDLSRNNFY--GEISSNWGKC 441 (518)
Q Consensus 368 ~~~~L~~L~l~~n~l~~~-~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~L~~n~l~--~~~~~~~~~~ 441 (518)
++..|+.++.+++...+. .-..+ .++.+|+.+.+.+|+ +++.-...+ .+++.|+.+++..+... +.+...-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 345666776666543211 11111 346777777777764 222211122 34566777777666432 1122333457
Q ss_pred CCCCEEEccCCccccCc-----cccccCCCCCCEEeCcCCcCc-ccCCccccCCCCCCEEECcCCccc
Q 037558 442 PKLDTLNVSMNNITGGI-----PREIGNSSQLQALDLSLNHIV-GEIPKELGKLNSLTKLILRGNQRA 503 (518)
Q Consensus 442 ~~L~~L~ls~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~~~ 503 (518)
+.|+.|.+++|...... ...-..+..|+.+.+++++.. +..-..+..+++|+.+++-+++-.
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 77777777777543211 112234566777777777543 233344556777777777776643
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.64 E-value=0.00019 Score=70.19 Aligned_cols=130 Identities=15% Similarity=0.212 Sum_probs=76.9
Q ss_pred ccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccC-ccccccChhhhCCCCCCEEe
Q 037558 346 LILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGN-NLTGNISEALAIYPNLTFID 424 (518)
Q Consensus 346 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~ 424 (518)
..++.|++++|.+... | . -..+|+.|.+++|.-...+|..+. ++|++|++++| .+. .+| ++|+.|+
T Consensus 52 ~~l~~L~Is~c~L~sL-P-~--LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP------~sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDIESL-P-V--LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLP------ESVRSLE 118 (426)
T ss_pred cCCCEEEeCCCCCccc-C-C--CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-ccc------cccceEE
Confidence 5688999998866543 4 1 124689999988644345665543 68899999988 444 333 4577788
Q ss_pred cccCcccc--ccCccccCCCCCCEEEccCCccc-c-CccccccCC-CCCCEEeCcCCcCcccCCccccCCCCCCEEECcC
Q 037558 425 LSRNNFYG--EISSNWGKCPKLDTLNVSMNNIT-G-GIPREIGNS-SQLQALDLSLNHIVGEIPKELGKLNSLTKLILRG 499 (518)
Q Consensus 425 L~~n~l~~--~~~~~~~~~~~L~~L~ls~n~l~-~-~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 499 (518)
++++.... .+| ++|+.|.+.+++.. . .+|. .+ ++|++|++++|... ..|..+. .+|+.|+++.
T Consensus 119 L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 119 IKGSATDSIKNVP------NGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI 186 (426)
T ss_pred eCCCCCcccccCc------chHhheecccccccccccccc---ccCCcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence 77665431 222 25566666433211 0 1111 12 46788888777755 3443333 4777777766
Q ss_pred C
Q 037558 500 N 500 (518)
Q Consensus 500 n 500 (518)
|
T Consensus 187 n 187 (426)
T PRK15386 187 E 187 (426)
T ss_pred c
Confidence 5
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.63 E-value=2.8e-05 Score=82.18 Aligned_cols=136 Identities=18% Similarity=0.158 Sum_probs=66.4
Q ss_pred ccCcEEEccCccCcc-cCchh-hcCCCCccEEecCCCcCccc-cChhhhcCCCCcEEEcccCccccccChhhhCCCCCCE
Q 037558 346 LILRELLLSGNHFAG-YLPYN-ICQGGALEIFTVSENHFQGT-IPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTF 422 (518)
Q Consensus 346 ~~L~~L~l~~n~~~~-~~~~~-~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 422 (518)
.+|+.|++++..... ..+.. -..+|.|+.|.+.+-.+... +.....++++|..||+++++++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 467777777654321 11111 22346666666666544321 222234556666666666666543 45556666666
Q ss_pred EecccCccccc-cCccccCCCCCCEEEccCCccccCc--cc----cccCCCCCCEEeCcCCcCcccCC
Q 037558 423 IDLSRNNFYGE-ISSNWGKCPKLDTLNVSMNNITGGI--PR----EIGNSSQLQALDLSLNHIVGEIP 483 (518)
Q Consensus 423 L~L~~n~l~~~-~~~~~~~~~~L~~L~ls~n~l~~~~--~~----~~~~l~~L~~L~L~~n~l~~~~~ 483 (518)
|.+.+-.+... .-..+.++++|+.||+|........ .. .-..+|.|+.||.|+..+.+.+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~l 267 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEIL 267 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHH
Confidence 66665555421 1122345566666666654433211 11 11234555555555555554333
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.57 E-value=2.3e-05 Score=82.87 Aligned_cols=34 Identities=21% Similarity=0.245 Sum_probs=14.0
Q ss_pred CCCCCCEEEccCccccccCCccccCCCCCcEEEccc
Q 037558 177 NLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSS 212 (518)
Q Consensus 177 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 212 (518)
++++|..||+++++++.. ..++++++|+.|.+.+
T Consensus 171 sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRN 204 (699)
T ss_pred ccCccceeecCCCCccCc--HHHhccccHHHHhccC
Confidence 344444444444444322 2334444444444443
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.49 E-value=0.00022 Score=61.62 Aligned_cols=82 Identities=15% Similarity=0.169 Sum_probs=32.9
Q ss_pred CCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccC-CccccCCCCCcEEEcc
Q 037558 133 LKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFI-PSDIGNSKSIFNLDLS 211 (518)
Q Consensus 133 L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~ 211 (518)
...+||++|.+. --..|.+++.|.+|.+.+|.|+..-|.--.-+++|+.|.+.+|.+.... -..+..+|+|++|.+-
T Consensus 44 ~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 334444444443 1122334444444444444444222222222344444444444433210 1123444555555555
Q ss_pred cCcCC
Q 037558 212 SNQFS 216 (518)
Q Consensus 212 ~n~~~ 216 (518)
+|+++
T Consensus 122 ~Npv~ 126 (233)
T KOG1644|consen 122 GNPVE 126 (233)
T ss_pred CCchh
Confidence 55443
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.46 E-value=0.00044 Score=57.21 Aligned_cols=105 Identities=21% Similarity=0.304 Sum_probs=35.9
Q ss_pred hcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCC
Q 037558 366 ICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLD 445 (518)
Q Consensus 366 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 445 (518)
|.++.+|+.+.+.+ .+.......|..+++|+.+.+.++ +......++..+++++.+.+.+ .+.......|..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 33444455555443 222222333444445555555443 3333334444444455555543 22222233344445555
Q ss_pred EEEccCCccccCccccccCCCCCCEEeCcC
Q 037558 446 TLNVSMNNITGGIPREIGNSSQLQALDLSL 475 (518)
Q Consensus 446 ~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~ 475 (518)
.+++..+ +.......|.++ .|+.+.+..
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 5555433 222222333443 444444443
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.45 E-value=0.00062 Score=56.28 Aligned_cols=106 Identities=14% Similarity=0.131 Sum_probs=44.0
Q ss_pred cCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCC
Q 037558 102 SFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHI 181 (518)
Q Consensus 102 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L 181 (518)
.|.++++|+.+.+.. .+...-...|..+++|+.+.+.++ +...-...|.++++|+.+.+.. .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 556666666666653 343333445666666666666654 4322333455665666666644 2222223344455556
Q ss_pred CEEEccCccccccCCccccCCCCCcEEEccc
Q 037558 182 SLLFIYDNLFSGFIPSDIGNSKSIFNLDLSS 212 (518)
Q Consensus 182 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 212 (518)
+.+.+..+ +.......+.++ +|+.+.+..
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 66555443 333333344444 555555443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.28 E-value=8.2e-05 Score=66.93 Aligned_cols=103 Identities=25% Similarity=0.209 Sum_probs=55.5
Q ss_pred hcCCCCcEEEcccCccccccChhhhCCCCCCEEecccC--ccccccCccccCCCCCCEEEccCCccccCcccc---ccCC
Q 037558 391 RNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRN--NFYGEISSNWGKCPKLDTLNVSMNNITGGIPRE---IGNS 465 (518)
Q Consensus 391 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n--~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~---~~~l 465 (518)
..+..|+.+++.+..++.. ..+..+++|+.|.++.| .+.+.++.....+|+|++|++++|++.. +.. +..+
T Consensus 40 d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l 115 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKEL 115 (260)
T ss_pred ccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhh
Confidence 3344555555555555422 23455666677777777 4444444445556777777777777652 222 3445
Q ss_pred CCCCEEeCcCCcCcccCC---ccccCCCCCCEEEC
Q 037558 466 SQLQALDLSLNHIVGEIP---KELGKLNSLTKLIL 497 (518)
Q Consensus 466 ~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l 497 (518)
++|..|++.+|..++.-- ..+.-+++|++||-
T Consensus 116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred cchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 566677777776553110 12334566665543
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.10 E-value=0.00024 Score=63.97 Aligned_cols=61 Identities=23% Similarity=0.331 Sum_probs=26.1
Q ss_pred CCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCC--CCCcCCCccCCCCCCCcEEEccCCCC
Q 037558 105 SFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTN--KLDGSIPPEVGQLSSMEVFFLCSNYL 167 (518)
Q Consensus 105 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n--~~~~~~p~~l~~l~~L~~L~L~~n~~ 167 (518)
.+..|+.+++.+..++.. ..+-.+++|++|.++.| ++.+.++.....+++|++|+++.|++
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 344444444444433221 11233445555555555 33333333333444444444444444
No 67
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.06 E-value=2.5e-05 Score=74.49 Aligned_cols=297 Identities=16% Similarity=0.092 Sum_probs=142.5
Q ss_pred CCCEEEccCcccccc--CCccccCCCCCcEEEcccCcC-CCCcchh-ccCCCCCcEEEcccC-cCCccccc-cccCCCCC
Q 037558 180 HISLLFIYDNLFSGF--IPSDIGNSKSIFNLDLSSNQF-SGPIPLF-FGNLSNLKSLYLYGN-SLSSPILS-SLGKFKSL 253 (518)
Q Consensus 180 ~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~l~~n~~-~~~~~~~-l~~l~~L~~L~l~~n-~~~~~~~~-~l~~l~~L 253 (518)
.|+.|.+.++.-.+. .-....+++++++|.+.++.. +...-.. -..+++|++|++..| .++..... --..+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 577777777754332 122235678888887777762 2111112 235677777777763 33332222 12345677
Q ss_pred CEeeCcCCC-CccC-CcccccCCCCCcEEEccCCcCccc--CccccCCCCCccEEEccCCc-ccccCC-ccCcCCCCCCe
Q 037558 254 IDLQLNENQ-FTGY-IPRSFGNLTSLSTLRLSKNELFGS--IPDEIGKMRSLSVLDLNENQ-FKGVLP-PSISNLTNLKE 327 (518)
Q Consensus 254 ~~L~l~~n~-~~~~-~~~~l~~l~~L~~L~l~~n~l~~~--~p~~~~~l~~L~~L~l~~n~-l~~~~~-~~l~~l~~L~~ 327 (518)
++++++++. +++. +-....++..++.+...+|.-.+. +...=+.+..+..+++.++. ++.... ..-..+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 777777653 3221 111223344455554444421100 00001223334444443432 221110 01123344445
Q ss_pred eecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCc-CccccChhh-hcCCCCcEEEcccCc
Q 037558 328 LALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENH-FQGTIPTSV-RNCTSLIRVHLNGNN 405 (518)
Q Consensus 328 L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~ 405 (518)
++.+++...+..+ +..-..++.+|+.+.++.++ ++..--..+ .+++.|+.+++..+.
T Consensus 299 l~~s~~t~~~d~~---------------------l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 299 LCYSSCTDITDEV---------------------LWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG 357 (483)
T ss_pred hcccCCCCCchHH---------------------HHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence 5444443211110 00112234566666666663 221111112 245677777777764
Q ss_pred cc--cccChhhhCCCCCCEEecccCcccccc-----CccccCCCCCCEEEccCCcccc-CccccccCCCCCCEEeCcCCc
Q 037558 406 LT--GNISEALAIYPNLTFIDLSRNNFYGEI-----SSNWGKCPKLDTLNVSMNNITG-GIPREIGNSSQLQALDLSLNH 477 (518)
Q Consensus 406 l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~-----~~~~~~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~ 477 (518)
.. +.+...-.+++.|+.+.+++|...... ...-.....|..+.+++++.+. ..-..+..++.|+.+++-+|+
T Consensus 358 ~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 358 LITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred eehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 33 123333456777888888877543221 2222446678888888887653 233445677888888888875
Q ss_pred Cccc--CCccccCCCCCCEEEC
Q 037558 478 IVGE--IPKELGKLNSLTKLIL 497 (518)
Q Consensus 478 l~~~--~~~~l~~l~~L~~L~l 497 (518)
-... +...-.++|++++..+
T Consensus 438 ~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 438 DVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred hhhhhhhHHHHhhCccceehhh
Confidence 3221 1122245677666543
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=3.5e-05 Score=69.62 Aligned_cols=100 Identities=24% Similarity=0.230 Sum_probs=65.3
Q ss_pred CCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCc-cccccCCCCCCEE
Q 037558 393 CTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGI-PREIGNSSQLQAL 471 (518)
Q Consensus 393 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L 471 (518)
+.+.+.|+.-+|.+++. .....++.|+.|.|+=|+|+..- .+..|++|++|.|..|.|.+.. ...+.++++|++|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34556667777776644 23456677777777777776442 3567778888888888776321 1345677888888
Q ss_pred eCcCCcCcccCCcc-----ccCCCCCCEEE
Q 037558 472 DLSLNHIVGEIPKE-----LGKLNSLTKLI 496 (518)
Q Consensus 472 ~L~~n~l~~~~~~~-----l~~l~~L~~L~ 496 (518)
.|..|+..|..+.. +.-+|+|++||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88888877765532 34467777764
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.45 E-value=0.00027 Score=73.06 Aligned_cols=110 Identities=21% Similarity=0.124 Sum_probs=52.0
Q ss_pred CCCCCcEEEcccCcCCcc--ccccccCCCCCCEeeCcCC-CCccCCc----ccccCCCCCcEEEccCCc-CcccCccccC
Q 037558 225 NLSNLKSLYLYGNSLSSP--ILSSLGKFKSLIDLQLNEN-QFTGYIP----RSFGNLTSLSTLRLSKNE-LFGSIPDEIG 296 (518)
Q Consensus 225 ~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~l~~n-~~~~~~~----~~l~~l~~L~~L~l~~n~-l~~~~p~~~~ 296 (518)
.++.|+.+.+..+.-... .......++.|+.|+++++ ......+ .....+++|+.++++.+. ++...-..++
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356666666665532221 2233445566777777652 1111111 122334566666666665 3333222232
Q ss_pred C-CCCccEEEccCCc-ccccCCc-cCcCCCCCCeeeccccc
Q 037558 297 K-MRSLSVLDLNENQ-FKGVLPP-SISNLTNLKELALLYNH 334 (518)
Q Consensus 297 ~-l~~L~~L~l~~n~-l~~~~~~-~l~~l~~L~~L~l~~n~ 334 (518)
. +++|++|.+.++. ++...-. ....+++|++|+++.+.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 2 5666666655555 3322111 22345556666666553
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.16 E-value=0.00045 Score=71.40 Aligned_cols=110 Identities=15% Similarity=0.051 Sum_probs=47.8
Q ss_pred CCCCcEEeCCCCCCccc--CCccccCCCCCCEEECCCC-CCCcCCC----ccCCCCCCCcEEEccCCC-CCccCCcCCcC
Q 037558 106 FPRLAYLDLTGSGLFGT--IPPEVGLLSHLKFLFIDTN-KLDGSIP----PEVGQLSSMEVFFLCSNY-LNGSVPPSLGN 177 (518)
Q Consensus 106 l~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~L~l~~n-~~~~~~p----~~l~~l~~L~~L~L~~n~-~~~~~p~~l~~ 177 (518)
++.|+.+.+.++.-... +-.....+++|+.|+++++ ......+ .....+.+|+.|+++++. +++..-..+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 55666666655532222 2233455666666666552 1111111 122344555666665555 33222122221
Q ss_pred -CCCCCEEEccCcc-ccccCCcc-ccCCCCCcEEEcccCcC
Q 037558 178 -LSHISLLFIYDNL-FSGFIPSD-IGNSKSIFNLDLSSNQF 215 (518)
Q Consensus 178 -l~~L~~L~l~~n~-~~~~~~~~-~~~~~~L~~L~l~~n~~ 215 (518)
+++|++|.+.+|. +++..-.. ...++.|++|+++++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 4555555555444 33211111 22345555555555543
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.00023 Score=64.42 Aligned_cols=63 Identities=29% Similarity=0.258 Sum_probs=27.7
Q ss_pred CCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccC-ccccCCCCCccEEEccCCcccc
Q 037558 249 KFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSI-PDEIGKMRSLSVLDLNENQFKG 313 (518)
Q Consensus 249 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~-p~~~~~l~~L~~L~l~~n~l~~ 313 (518)
+++.|+.|.|+-|+|+.. ..+..+++|++|+|..|.+.... -..+.++++|+.|.|..|.-.|
T Consensus 39 kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCG 102 (388)
T ss_pred hcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCccc
Confidence 344445555555544432 12344455555555555443210 0123344555555555554443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.08 E-value=0.0024 Score=34.34 Aligned_cols=21 Identities=24% Similarity=0.178 Sum_probs=13.5
Q ss_pred CCCEEECcCCccccccCccCcc
Q 037558 491 SLTKLILRGNQRAVTLSFINKV 512 (518)
Q Consensus 491 ~L~~L~l~~n~~~~~ip~~l~~ 512 (518)
+|++||+++|++. .||.++++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566777777665 66666554
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.96 E-value=0.0098 Score=31.91 Aligned_cols=12 Identities=33% Similarity=0.395 Sum_probs=5.2
Q ss_pred CcEEEccCCCCC
Q 037558 157 MEVFFLCSNYLN 168 (518)
Q Consensus 157 L~~L~L~~n~~~ 168 (518)
|++||+++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.94 E-value=0.00029 Score=71.45 Aligned_cols=181 Identities=23% Similarity=0.228 Sum_probs=105.4
Q ss_pred CccEEEccCCcccccCC----ccCcCCCCCCeeecccccccccCCccc-----cc-ccCcEEEccCccCccc----Cchh
Q 037558 300 SLSVLDLNENQFKGVLP----PSISNLTNLKELALLYNHLSGSIPPSL-----GN-LILRELLLSGNHFAGY----LPYN 365 (518)
Q Consensus 300 ~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~~~p~~~-----~~-~~L~~L~l~~n~~~~~----~~~~ 365 (518)
.+..+.+.+|.+..... ..+...+.|..|++++|.+.+.--..+ .+ ..+++|++..|.++.. +...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 47888888888874432 345677889999999998863221111 11 3456677777766543 3334
Q ss_pred hcCCCCccEEecCCCcCccc----cChhhh----cCCCCcEEEcccCccccc----cChhhhCCCC-CCEEecccCcccc
Q 037558 366 ICQGGALEIFTVSENHFQGT----IPTSVR----NCTSLIRVHLNGNNLTGN----ISEALAIYPN-LTFIDLSRNNFYG 432 (518)
Q Consensus 366 ~~~~~~L~~L~l~~n~l~~~----~~~~~~----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~-L~~L~L~~n~l~~ 432 (518)
+.....++.++++.|.+... ++..+. ...++++|++..|.++.. +...+...+. +..+++.+|++.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 44456677777777765311 122222 356677777777766622 1233444444 5567777777653
Q ss_pred c----cCccccCC-CCCCEEEccCCccccC----ccccccCCCCCCEEeCcCCcCcc
Q 037558 433 E----ISSNWGKC-PKLDTLNVSMNNITGG----IPREIGNSSQLQALDLSLNHIVG 480 (518)
Q Consensus 433 ~----~~~~~~~~-~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~ 480 (518)
. ....+..+ ..+++++++.|.+... ....+..++.++.+.++.|++..
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 3 12233334 5667777777777643 22334456677777777776654
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.19 E-value=0.00067 Score=68.82 Aligned_cols=203 Identities=24% Similarity=0.218 Sum_probs=129.8
Q ss_pred CCcEEEccCCcCcccCc----cccCCCCCccEEEccCCcccccCCc----cCcCC-CCCCeeecccccccccCCcc----
Q 037558 276 SLSTLRLSKNELFGSIP----DEIGKMRSLSVLDLNENQFKGVLPP----SISNL-TNLKELALLYNHLSGSIPPS---- 342 (518)
Q Consensus 276 ~L~~L~l~~n~l~~~~p----~~~~~l~~L~~L~l~~n~l~~~~~~----~l~~l-~~L~~L~l~~n~l~~~~p~~---- 342 (518)
.+..+.+.+|.+..... ..+...+.|+.|++++|.+.+.... .+... ..++.|.+..|.+++..-..
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 47888899988765433 3445678899999999998743221 22333 56777888888776543221
Q ss_pred cc-cccCcEEEccCccCccc----Cchhhc----CCCCccEEecCCCcCcccc----ChhhhcCCC-CcEEEcccCcccc
Q 037558 343 LG-NLILRELLLSGNHFAGY----LPYNIC----QGGALEIFTVSENHFQGTI----PTSVRNCTS-LIRVHLNGNNLTG 408 (518)
Q Consensus 343 ~~-~~~L~~L~l~~n~~~~~----~~~~~~----~~~~L~~L~l~~n~l~~~~----~~~~~~l~~-L~~L~L~~n~l~~ 408 (518)
+. ...++.++++.|.+... ++..+. ...+++.|.+++|.++... ...+...+. +..+++..|++.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 11 25688888888876411 222222 4567889999998776221 122334455 7779999998885
Q ss_pred c----cChhhhCC-CCCCEEecccCcccccc----CccccCCCCCCEEEccCCccccCccc----cccCCCCCCEEeCcC
Q 037558 409 N----ISEALAIY-PNLTFIDLSRNNFYGEI----SSNWGKCPKLDTLNVSMNNITGGIPR----EIGNSSQLQALDLSL 475 (518)
Q Consensus 409 ~----~~~~l~~l-~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~ls~n~l~~~~~~----~~~~l~~L~~L~L~~ 475 (518)
. ....+..+ +.++.++++.|.+.... ...+..++.++++.+++|.+.+.-.. .......+..+.+.+
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~ 327 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGG 327 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccc
Confidence 5 22344555 67899999999997653 44556678999999999998753222 223334455555655
Q ss_pred CcC
Q 037558 476 NHI 478 (518)
Q Consensus 476 n~l 478 (518)
+..
T Consensus 328 ~~~ 330 (478)
T KOG4308|consen 328 TGK 330 (478)
T ss_pred cCc
Confidence 443
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.59 E-value=0.14 Score=25.36 Aligned_cols=10 Identities=50% Similarity=0.611 Sum_probs=3.2
Q ss_pred CCEEEccCCc
Q 037558 444 LDTLNVSMNN 453 (518)
Q Consensus 444 L~~L~ls~n~ 453 (518)
|+.|++++|+
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3333444333
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.08 E-value=0.023 Score=49.42 Aligned_cols=83 Identities=18% Similarity=0.179 Sum_probs=45.7
Q ss_pred CCCcEEEcccCccccccChhhhCCCCCCEEecccCccccc-cCccc-cCCCCCCEEEccCCc-cccCccccccCCCCCCE
Q 037558 394 TSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGE-ISSNW-GKCPKLDTLNVSMNN-ITGGIPREIGNSSQLQA 470 (518)
Q Consensus 394 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~-~~~~~L~~L~ls~n~-l~~~~~~~~~~l~~L~~ 470 (518)
..++.++-+++.|...--+.+..++.++.|.+.+|.-.+. --..+ .-.++|+.|++++|. |++.-...+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 3456677777777666556666677777777776643211 00001 124566666666663 44333344555666666
Q ss_pred EeCcCC
Q 037558 471 LDLSLN 476 (518)
Q Consensus 471 L~L~~n 476 (518)
|.+.+=
T Consensus 181 L~l~~l 186 (221)
T KOG3864|consen 181 LHLYDL 186 (221)
T ss_pred HHhcCc
Confidence 655544
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.01 E-value=0.0047 Score=54.71 Aligned_cols=85 Identities=14% Similarity=0.186 Sum_probs=39.2
Q ss_pred cCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEE
Q 037558 392 NCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQAL 471 (518)
Q Consensus 392 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L 471 (518)
.....+.||++.|++.. .-.-++.++.+..|+++.|++. ..|..+.....++.+++-+|..+ ..|.++...+.++.+
T Consensus 40 ~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 34455555555554431 1222333344444555555444 33444444444444444444444 344445555555555
Q ss_pred eCcCCcCc
Q 037558 472 DLSLNHIV 479 (518)
Q Consensus 472 ~L~~n~l~ 479 (518)
++.++++.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 55555433
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.65 E-value=0.089 Score=45.92 Aligned_cols=82 Identities=18% Similarity=0.120 Sum_probs=47.8
Q ss_pred CccEEecCCCcCccccChhhhcCCCCcEEEcccCccccc-cChhh-hCCCCCCEEecccC-ccccccCccccCCCCCCEE
Q 037558 371 ALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGN-ISEAL-AIYPNLTFIDLSRN-NFYGEISSNWGKCPKLDTL 447 (518)
Q Consensus 371 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l-~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~L~~L 447 (518)
.++.++-++..+...--+.+..++.++.|.+.+|.=-+. --+.+ ...++|+.|++++| +|++..-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 456677777766655556666677777777776632211 00111 13467777777766 4555445556666777777
Q ss_pred EccCC
Q 037558 448 NVSMN 452 (518)
Q Consensus 448 ~ls~n 452 (518)
.+.+-
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 66653
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.60 E-value=0.16 Score=27.77 Aligned_cols=15 Identities=47% Similarity=0.632 Sum_probs=6.1
Q ss_pred CCCCEEeCcCCcCcc
Q 037558 466 SQLQALDLSLNHIVG 480 (518)
Q Consensus 466 ~~L~~L~L~~n~l~~ 480 (518)
++|++|+|++|++.+
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 344455555554443
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.16 E-value=0.015 Score=51.74 Aligned_cols=87 Identities=14% Similarity=0.137 Sum_probs=45.3
Q ss_pred hcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCC
Q 037558 366 ICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLD 445 (518)
Q Consensus 366 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 445 (518)
+..+.....||++.|++. ..-..|..++.+..|+++.|++. ..|..+.....+..+++.+|+.+ ..|.++...+.++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 333445555566555543 23333444555555566655554 33444444555555555555554 4455555566666
Q ss_pred EEEccCCccc
Q 037558 446 TLNVSMNNIT 455 (518)
Q Consensus 446 ~L~ls~n~l~ 455 (518)
++++.++.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 6666555543
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=80.49 E-value=1.5 Score=24.30 Aligned_cols=13 Identities=46% Similarity=0.572 Sum_probs=5.3
Q ss_pred CCCEEecccCccc
Q 037558 419 NLTFIDLSRNNFY 431 (518)
Q Consensus 419 ~L~~L~L~~n~l~ 431 (518)
+|+.|+|++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3344444444443
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=80.49 E-value=1.5 Score=24.30 Aligned_cols=13 Identities=46% Similarity=0.572 Sum_probs=5.3
Q ss_pred CCCEEecccCccc
Q 037558 419 NLTFIDLSRNNFY 431 (518)
Q Consensus 419 ~L~~L~L~~n~l~ 431 (518)
+|+.|+|++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3344444444443
No 84
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=76.44 E-value=11 Score=37.63 Aligned_cols=58 Identities=21% Similarity=0.310 Sum_probs=25.5
Q ss_pred CCEEecccCccccccC---ccccCCCCCCEEEccCCcccc----CccccccCCCCCCEEeCcCCc
Q 037558 420 LTFIDLSRNNFYGEIS---SNWGKCPKLDTLNVSMNNITG----GIPREIGNSSQLQALDLSLNH 477 (518)
Q Consensus 420 L~~L~L~~n~l~~~~~---~~~~~~~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~ 477 (518)
+..+.++.|....... .....-+.++.|++++|.... .+|.....-..+..+..+.|.
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~ 479 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNL 479 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCC
Confidence 4455555555442211 122334556666666665432 233333333344444444443
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=61.38 E-value=3.8 Score=41.68 Aligned_cols=36 Identities=31% Similarity=0.422 Sum_probs=16.8
Q ss_pred CCCCcEEEcccCccccc--cChhhhCCCCCCEEecccC
Q 037558 393 CTSLIRVHLNGNNLTGN--ISEALAIYPNLTFIDLSRN 428 (518)
Q Consensus 393 l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n 428 (518)
.+.+..+.+++|++... +...-...|+|++|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 44555566666655422 1112223345555555555
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=60.43 E-value=3.7 Score=41.74 Aligned_cols=62 Identities=15% Similarity=0.084 Sum_probs=27.5
Q ss_pred CCccEEecCCCcCccc--cChhhhcCCCCcEEEcccCccccccChhhhC--CCCCCEEecccCccc
Q 037558 370 GALEIFTVSENHFQGT--IPTSVRNCTSLIRVHLNGNNLTGNISEALAI--YPNLTFIDLSRNNFY 431 (518)
Q Consensus 370 ~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~--l~~L~~L~L~~n~l~ 431 (518)
+.+..+.+++|++... +..--...++|..|+|++|...-....++.+ ...|++|.+.+|++.
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 4555566666655321 1111123456666666666221111112221 234556666666554
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=59.97 E-value=6.9 Score=21.86 Aligned_cols=13 Identities=38% Similarity=0.447 Sum_probs=7.2
Q ss_pred CCCEEECCCCCCC
Q 037558 132 HLKFLFIDTNKLD 144 (518)
Q Consensus 132 ~L~~L~l~~n~~~ 144 (518)
+|++|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555555555555
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=58.77 E-value=9.4 Score=21.34 Aligned_cols=12 Identities=25% Similarity=0.326 Sum_probs=5.7
Q ss_pred CCcEEEccCCCC
Q 037558 156 SMEVFFLCSNYL 167 (518)
Q Consensus 156 ~L~~L~L~~n~~ 167 (518)
+|++|+++.|.|
T Consensus 3 ~L~~L~L~~NkI 14 (26)
T smart00365 3 NLEELDLSQNKI 14 (26)
T ss_pred ccCEEECCCCcc
Confidence 444444444444
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=58.68 E-value=8.1 Score=21.90 Aligned_cols=14 Identities=36% Similarity=0.342 Sum_probs=11.1
Q ss_pred CCCCEEECcCCccc
Q 037558 490 NSLTKLILRGNQRA 503 (518)
Q Consensus 490 ~~L~~L~l~~n~~~ 503 (518)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46888888888874
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=48.86 E-value=13 Score=20.52 Aligned_cols=14 Identities=29% Similarity=0.302 Sum_probs=10.7
Q ss_pred CCCCCEEECcCCcc
Q 037558 489 LNSLTKLILRGNQR 502 (518)
Q Consensus 489 l~~L~~L~l~~n~~ 502 (518)
+++|+.|+|++|.-
T Consensus 1 c~~L~~L~l~~C~~ 14 (26)
T smart00367 1 CPNLRELDLSGCTN 14 (26)
T ss_pred CCCCCEeCCCCCCC
Confidence 46788888888863
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=41.17 E-value=43 Score=33.75 Aligned_cols=199 Identities=18% Similarity=0.056 Sum_probs=96.5
Q ss_pred CCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCc----ccccccCcEEEccCccCcccCchhhcCC---C
Q 037558 298 MRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPP----SLGNLILRELLLSGNHFAGYLPYNICQG---G 370 (518)
Q Consensus 298 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~----~~~~~~L~~L~l~~n~~~~~~~~~~~~~---~ 370 (518)
-+.+++++++.|.+....|..+..-.. -+.++.+..+..... .-....+.+++++.|.....+|.....+ .
T Consensus 164 npr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~ 241 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTL 241 (553)
T ss_pred cchhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhh
Confidence 356789999999988776655533221 155666655433222 2222567888888888777776543322 2
Q ss_pred CccEEecCCCcCc--c-ccChhhhcCCCCcEEEcccCcccc----ccC----hhhhCCCCCCEEecccCccccccCc-cc
Q 037558 371 ALEIFTVSENHFQ--G-TIPTSVRNCTSLIRVHLNGNNLTG----NIS----EALAIYPNLTFIDLSRNNFYGEISS-NW 438 (518)
Q Consensus 371 ~L~~L~l~~n~l~--~-~~~~~~~~l~~L~~L~L~~n~l~~----~~~----~~l~~l~~L~~L~L~~n~l~~~~~~-~~ 438 (518)
.++.++.+...+. . .-+-..+.-++++..+++.|...- +.. +.+..-+++ +|++.+++...+-+. .+
T Consensus 242 vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~L 320 (553)
T KOG4242|consen 242 VLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSML 320 (553)
T ss_pred hhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhh
Confidence 3444554443221 0 011122334566666666654331 111 223333445 555555554322111 11
Q ss_pred c-----CCCCCCEEEccCCcccc-CccccccCCCCCCEEeCcCCcCcccCCccc--cCCCCCCEEECcC
Q 037558 439 G-----KCPKLDTLNVSMNNITG-GIPREIGNSSQLQALDLSLNHIVGEIPKEL--GKLNSLTKLILRG 499 (518)
Q Consensus 439 ~-----~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~l~~ 499 (518)
- .-+.=-++|++.|...+ .....-..=..+++|++..|...++.-... ..-++.+.+++.+
T Consensus 321 Lgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agr 389 (553)
T KOG4242|consen 321 LGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGR 389 (553)
T ss_pred cccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccccceeeccccccccccc
Confidence 0 01111245555555432 111111111347788888887766544322 2345666666654
Done!