Query 037558
Match_columns 518
No_of_seqs 408 out of 4453
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 23:24:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037558.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037558hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.5E-64 5.1E-69 548.5 38.3 475 25-512 3-560 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.1E-56 7.3E-61 484.6 36.5 432 82-517 200-707 (768)
3 4eco_A Uncharacterized protein 100.0 7.5E-56 2.6E-60 469.7 29.1 454 32-504 28-601 (636)
4 4ecn_A Leucine-rich repeat pro 100.0 2.8E-54 9.5E-59 465.3 33.5 455 31-506 266-843 (876)
5 3t6q_A CD180 antigen; protein- 100.0 1.2E-50 4.2E-55 429.5 41.5 431 82-515 33-548 (606)
6 3t6q_A CD180 antigen; protein- 100.0 1.6E-49 5.3E-54 421.0 37.4 424 81-507 56-564 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-48 4.3E-53 414.0 36.8 426 82-517 32-548 (606)
8 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-47 5.4E-52 411.0 42.5 436 81-517 24-587 (680)
9 2z63_A TOLL-like receptor 4, v 100.0 1.6E-47 5.5E-52 402.7 35.9 421 81-507 27-535 (570)
10 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-46 3.7E-51 404.5 40.6 434 82-516 49-611 (680)
11 3vq2_A TLR4, TOLL-like recepto 100.0 2.7E-47 9.1E-52 403.9 34.7 417 81-507 55-562 (606)
12 3j0a_A TOLL-like receptor 5; m 100.0 1.1E-47 3.8E-52 420.4 32.5 441 71-515 14-551 (844)
13 4eco_A Uncharacterized protein 100.0 3.5E-47 1.2E-51 403.3 23.7 397 107-511 81-586 (636)
14 2z63_A TOLL-like receptor 4, v 100.0 6.5E-46 2.2E-50 390.4 32.9 395 81-483 51-535 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 2.5E-46 8.5E-51 391.8 28.6 425 70-507 3-514 (549)
16 3j0a_A TOLL-like receptor 5; m 100.0 6E-45 2.1E-49 398.8 31.2 421 81-507 47-564 (844)
17 4ecn_A Leucine-rich repeat pro 100.0 5.4E-45 1.9E-49 393.0 28.8 394 107-511 323-826 (876)
18 2z7x_B TOLL-like receptor 1, v 100.0 1.9E-44 6.4E-49 374.9 27.4 411 82-507 21-485 (520)
19 2z81_A CD282 antigen, TOLL-lik 100.0 2E-43 6.8E-48 369.8 29.9 425 76-517 2-500 (549)
20 2z7x_B TOLL-like receptor 1, v 100.0 3.5E-43 1.2E-47 365.3 26.2 414 85-517 3-471 (520)
21 3v47_A TOLL-like receptor 5B a 100.0 3.5E-42 1.2E-46 351.8 31.4 363 107-483 30-412 (455)
22 3v47_A TOLL-like receptor 5B a 100.0 1.3E-41 4.3E-46 347.7 31.8 364 131-507 30-412 (455)
23 4g8a_A TOLL-like receptor 4; l 100.0 1.3E-40 4.4E-45 354.5 37.9 421 82-505 52-582 (635)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.7E-41 2.3E-45 351.1 31.9 407 85-507 34-514 (562)
25 1ogq_A PGIP-2, polygalacturona 100.0 3.7E-42 1.3E-46 333.0 19.8 292 30-334 2-302 (313)
26 1jl5_A Outer protein YOPM; leu 100.0 4.4E-40 1.5E-44 334.0 28.0 382 81-514 10-422 (454)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.3E-39 7.8E-44 339.5 31.8 389 81-483 51-514 (562)
28 4g8a_A TOLL-like receptor 4; l 100.0 2.3E-38 7.8E-43 337.2 35.9 407 107-517 52-570 (635)
29 1o6v_A Internalin A; bacterial 100.0 6.5E-38 2.2E-42 320.7 33.2 347 104-480 43-389 (466)
30 1o6v_A Internalin A; bacterial 100.0 1.1E-37 3.8E-42 319.0 34.4 344 82-456 46-389 (466)
31 3bz5_A Internalin-J, INLJ; leu 100.0 6.3E-38 2.1E-42 318.5 28.1 354 82-511 42-395 (457)
32 1jl5_A Outer protein YOPM; leu 100.0 3.3E-37 1.1E-41 312.9 28.0 359 105-513 9-382 (454)
33 2id5_A Lingo-1, leucine rich r 100.0 7.8E-37 2.7E-41 314.0 28.9 321 133-456 13-334 (477)
34 2id5_A Lingo-1, leucine rich r 100.0 1.6E-36 5.4E-41 311.7 29.5 321 110-433 14-335 (477)
35 3bz5_A Internalin-J, INLJ; leu 100.0 9E-36 3.1E-40 302.6 28.3 376 81-516 63-456 (457)
36 3o6n_A APL1; leucine-rich repe 100.0 6.7E-35 2.3E-39 291.5 27.9 313 104-457 42-354 (390)
37 3oja_B Anopheles plasmodium-re 100.0 3.8E-34 1.3E-38 301.6 29.5 311 105-456 49-359 (597)
38 3o6n_A APL1; leucine-rich repe 100.0 3.7E-34 1.3E-38 286.2 27.8 310 154-504 44-353 (390)
39 4fmz_A Internalin; leucine ric 100.0 5.3E-33 1.8E-37 273.4 30.7 307 151-503 40-346 (347)
40 3oja_B Anopheles plasmodium-re 100.0 1.1E-33 3.9E-38 297.9 27.7 310 154-504 50-359 (597)
41 4fmz_A Internalin; leucine ric 100.0 3.5E-33 1.2E-37 274.6 29.3 308 102-479 39-346 (347)
42 4fcg_A Uncharacterized protein 100.0 1.8E-34 6.1E-39 280.8 15.4 283 30-336 23-314 (328)
43 1ogq_A PGIP-2, polygalacturona 100.0 3.9E-33 1.3E-37 269.7 18.2 253 252-507 51-308 (313)
44 1z7x_W Ribonuclease inhibitor; 100.0 2.6E-36 9.1E-41 308.8 -6.2 379 107-508 3-445 (461)
45 1xku_A Decorin; proteoglycan, 100.0 6E-31 2E-35 256.7 29.6 289 156-501 32-330 (330)
46 2ft3_A Biglycan; proteoglycan, 100.0 3E-31 1E-35 259.0 27.3 288 156-501 34-331 (332)
47 2ft3_A Biglycan; proteoglycan, 100.0 2.2E-31 7.6E-36 260.0 26.2 282 204-517 34-323 (332)
48 1z7x_W Ribonuclease inhibitor; 100.0 2.3E-35 7.7E-40 301.9 -2.6 355 131-505 3-413 (461)
49 1xku_A Decorin; proteoglycan, 100.0 1.5E-30 5.1E-35 253.9 29.3 220 108-336 32-253 (330)
50 3ogk_B Coronatine-insensitive 100.0 7.1E-33 2.4E-37 292.4 -3.1 402 102-505 68-528 (592)
51 3ogk_B Coronatine-insensitive 100.0 1.8E-32 6E-37 289.4 -1.5 415 82-499 73-547 (592)
52 2z66_A Variable lymphocyte rec 100.0 2.7E-29 9.1E-34 242.4 18.4 254 69-338 5-263 (306)
53 4fcg_A Uncharacterized protein 100.0 6.8E-29 2.3E-33 241.4 19.0 235 105-359 79-314 (328)
54 2z66_A Variable lymphocyte rec 100.0 8E-29 2.7E-33 239.0 18.7 282 206-514 10-298 (306)
55 2z80_A TOLL-like receptor 2, v 100.0 1.4E-28 4.9E-33 242.2 20.0 279 108-433 32-316 (353)
56 2z80_A TOLL-like receptor 2, v 100.0 1.3E-28 4.5E-33 242.4 18.0 279 201-507 29-318 (353)
57 1ozn_A Reticulon 4 receptor; N 100.0 4E-28 1.4E-32 231.5 19.8 224 85-312 14-238 (285)
58 1ozn_A Reticulon 4 receptor; N 100.0 1.1E-27 3.8E-32 228.5 20.4 256 110-368 14-270 (285)
59 3zyi_A Leucine-rich repeat-con 100.0 5.9E-27 2E-31 238.4 25.4 228 107-336 75-303 (452)
60 3zyj_A Leucine-rich repeat-con 100.0 1E-26 3.4E-31 235.9 24.9 228 107-336 64-292 (440)
61 3zyi_A Leucine-rich repeat-con 100.0 1.1E-26 3.7E-31 236.5 24.4 229 82-313 75-304 (452)
62 3zyj_A Leucine-rich repeat-con 99.9 2.8E-26 9.7E-31 232.6 25.6 247 228-479 44-292 (440)
63 1wwl_A Monocyte differentiatio 99.9 4.9E-29 1.7E-33 241.0 3.0 222 109-336 65-309 (312)
64 2o6q_A Variable lymphocyte rec 99.9 4.2E-26 1.4E-30 215.6 22.9 215 68-286 2-216 (270)
65 1wwl_A Monocyte differentiatio 99.9 3.4E-28 1.2E-32 235.0 8.5 244 251-504 43-310 (312)
66 2p1m_B Transport inhibitor res 99.9 1.4E-30 4.7E-35 275.1 -9.2 131 129-259 103-243 (594)
67 3o53_A Protein LRIM1, AGAP0063 99.9 8E-28 2.7E-32 233.0 10.5 266 229-507 12-280 (317)
68 3o53_A Protein LRIM1, AGAP0063 99.9 2.7E-28 9.2E-33 236.3 7.1 266 205-484 12-281 (317)
69 2p1m_B Transport inhibitor res 99.9 4.4E-30 1.5E-34 271.2 -8.4 417 82-502 66-543 (594)
70 3g06_A SSPH2 (leucine-rich rep 99.9 2.5E-25 8.7E-30 232.5 26.6 266 180-488 41-306 (622)
71 3g06_A SSPH2 (leucine-rich rep 99.9 1.3E-24 4.3E-29 227.2 29.6 195 107-336 40-234 (622)
72 3oja_A Leucine-rich immune mol 99.9 1.3E-26 4.4E-31 237.4 12.6 236 250-498 33-270 (487)
73 3oja_A Leucine-rich immune mol 99.9 9.4E-27 3.2E-31 238.4 10.3 235 226-474 33-270 (487)
74 2z62_A TOLL-like receptor 4, v 99.9 6.3E-24 2.2E-28 201.4 22.1 205 107-312 28-237 (276)
75 2z62_A TOLL-like receptor 4, v 99.9 9.1E-24 3.1E-28 200.3 20.9 151 136-289 12-163 (276)
76 2o6q_A Variable lymphocyte rec 99.9 5.2E-23 1.8E-27 194.3 24.1 201 108-311 17-217 (270)
77 3rfs_A Internalin B, repeat mo 99.9 1E-23 3.5E-28 199.4 17.5 206 104-344 38-243 (272)
78 3rfs_A Internalin B, repeat mo 99.9 2.4E-23 8E-28 196.9 18.3 209 153-371 39-247 (272)
79 1p9a_G Platelet glycoprotein I 99.9 1.3E-22 4.3E-27 193.5 21.5 202 103-311 6-207 (290)
80 2ast_B S-phase kinase-associat 99.9 1.4E-25 4.7E-30 219.4 0.7 265 70-344 36-314 (336)
81 1p9a_G Platelet glycoprotein I 99.9 2.5E-22 8.4E-27 191.4 21.4 202 127-335 6-207 (290)
82 3goz_A Leucine-rich repeat-con 99.9 2.3E-24 7.7E-29 212.7 6.4 255 207-481 2-299 (362)
83 2ca6_A RAN GTPase-activating p 99.9 1.6E-24 5.4E-29 216.0 4.1 245 243-506 24-319 (386)
84 3goz_A Leucine-rich repeat-con 99.9 5.5E-24 1.9E-28 210.0 7.7 255 232-505 3-299 (362)
85 3m19_A Variable lymphocyte rec 99.9 3.2E-22 1.1E-26 186.8 18.7 190 69-264 3-192 (251)
86 4glp_A Monocyte differentiatio 99.9 6.9E-23 2.4E-27 197.6 14.2 225 107-336 64-307 (310)
87 2ast_B S-phase kinase-associat 99.9 7.7E-24 2.6E-28 206.9 7.1 254 229-511 49-314 (336)
88 2ca6_A RAN GTPase-activating p 99.9 4E-24 1.4E-28 213.0 3.1 245 218-482 23-319 (386)
89 2xwt_C Thyrotropin receptor; s 99.9 7.9E-22 2.7E-26 182.7 16.8 195 133-333 33-236 (239)
90 4glp_A Monocyte differentiatio 99.9 3.4E-22 1.2E-26 192.7 13.7 225 83-313 65-308 (310)
91 3m19_A Variable lymphocyte rec 99.9 4.8E-21 1.6E-25 178.8 20.6 177 133-312 16-192 (251)
92 1h6u_A Internalin H; cell adhe 99.9 2.3E-21 7.9E-26 186.5 17.8 194 103-312 37-230 (308)
93 1h6u_A Internalin H; cell adhe 99.9 4.3E-21 1.5E-25 184.6 18.5 207 113-337 25-231 (308)
94 2xwt_C Thyrotropin receptor; s 99.9 3.4E-21 1.2E-25 178.5 17.2 203 146-356 25-236 (239)
95 2o6s_A Variable lymphocyte rec 99.9 8E-21 2.7E-25 172.0 17.1 185 69-275 5-189 (208)
96 3cvr_A Invasion plasmid antige 99.8 2.8E-20 9.7E-25 192.0 15.6 200 68-297 40-252 (571)
97 2o6s_A Variable lymphocyte rec 99.8 1E-19 3.5E-24 164.6 16.6 131 131-261 28-158 (208)
98 4ay9_X Follicle-stimulating ho 99.8 1.9E-19 6.6E-24 176.5 17.1 239 230-476 12-256 (350)
99 3cvr_A Invasion plasmid antige 99.8 3.2E-19 1.1E-23 184.1 19.0 186 108-321 60-252 (571)
100 4ay9_X Follicle-stimulating ho 99.8 6.7E-19 2.3E-23 172.6 19.4 181 107-288 30-215 (350)
101 3e6j_A Variable lymphocyte rec 99.8 1.5E-18 5.3E-23 159.2 18.0 158 68-241 16-173 (229)
102 1m9s_A Internalin B; cell inva 99.8 3.2E-19 1.1E-23 186.1 13.5 170 104-287 40-209 (605)
103 1h6t_A Internalin B; cell adhe 99.8 8.7E-19 3E-23 167.0 14.8 170 129-312 44-213 (291)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 2E-18 6.9E-23 157.3 15.9 153 326-480 14-167 (220)
105 1h6t_A Internalin B; cell adhe 99.8 1E-18 3.4E-23 166.6 14.0 174 102-289 41-214 (291)
106 2v9t_B SLIT homolog 2 protein 99.8 9.4E-18 3.2E-22 152.9 17.2 86 131-216 32-117 (220)
107 2v9t_B SLIT homolog 2 protein 99.8 6.6E-18 2.3E-22 153.9 16.2 152 326-479 14-165 (220)
108 1m9s_A Internalin B; cell inva 99.8 4.5E-18 1.5E-22 177.5 16.6 169 82-265 43-211 (605)
109 2v70_A SLIT-2, SLIT homolog 2 99.8 1.1E-17 3.7E-22 152.4 17.0 131 158-288 35-166 (220)
110 2xot_A Amphoterin-induced prot 99.8 3.6E-18 1.2E-22 168.1 14.8 156 348-503 41-202 (361)
111 3e6j_A Variable lymphocyte rec 99.8 1.2E-17 4.2E-22 153.1 16.9 152 325-479 21-172 (229)
112 2xot_A Amphoterin-induced prot 99.8 5.8E-18 2E-22 166.6 15.3 176 110-288 21-202 (361)
113 4b8c_D Glucose-repressible alc 99.8 7.5E-20 2.6E-24 195.7 1.7 261 32-312 130-404 (727)
114 4ezg_A Putative uncharacterize 99.7 7E-18 2.4E-22 151.1 11.9 152 129-288 42-194 (197)
115 4ezg_A Putative uncharacterize 99.7 1.4E-17 4.9E-22 149.0 13.2 153 104-264 41-194 (197)
116 1dce_A Protein (RAB geranylger 99.7 2.1E-20 7.2E-25 193.9 -6.4 120 372-496 443-566 (567)
117 1xeu_A Internalin C; cellular 99.7 2.2E-17 7.4E-22 154.8 9.5 168 106-288 18-185 (263)
118 1dce_A Protein (RAB geranylger 99.7 1.5E-19 5.1E-24 187.5 -6.4 203 249-473 347-567 (567)
119 1xeu_A Internalin C; cellular 99.7 1.5E-17 5.1E-22 155.9 7.4 169 129-312 17-185 (263)
120 1w8a_A SLIT protein; signaling 99.7 1.7E-16 5.8E-21 141.3 13.3 132 349-483 11-143 (192)
121 3sb4_A Hypothetical leucine ri 99.7 2.7E-17 9.2E-22 159.8 8.5 104 392-497 224-328 (329)
122 3sb4_A Hypothetical leucine ri 99.7 8.3E-17 2.8E-21 156.3 10.0 99 417-517 225-324 (329)
123 2ell_A Acidic leucine-rich nuc 99.7 2.3E-16 7.9E-21 137.3 10.6 137 370-509 24-165 (168)
124 4b8c_D Glucose-repressible alc 99.7 3.3E-17 1.1E-21 175.3 4.6 218 107-336 173-404 (727)
125 2ell_A Acidic leucine-rich nuc 99.6 4.8E-16 1.7E-20 135.2 10.8 133 106-240 23-160 (168)
126 1w8a_A SLIT protein; signaling 99.6 1.9E-15 6.5E-20 134.4 14.3 128 87-218 13-141 (192)
127 2je0_A Acidic leucine-rich nuc 99.6 3.4E-16 1.2E-20 133.3 8.1 128 370-499 17-149 (149)
128 2je0_A Acidic leucine-rich nuc 99.6 3.9E-16 1.3E-20 132.9 8.2 127 106-234 16-147 (149)
129 2o6r_A Variable lymphocyte rec 99.6 3.6E-15 1.2E-19 130.8 13.9 114 394-507 28-141 (177)
130 2wfh_A SLIT homolog 2 protein 99.6 4.4E-15 1.5E-19 132.1 14.2 127 349-479 13-139 (193)
131 4fs7_A Uncharacterized protein 99.6 5.1E-14 1.8E-18 140.1 22.5 328 148-517 64-391 (394)
132 4fs7_A Uncharacterized protein 99.6 1.8E-13 6.3E-18 136.1 25.3 155 99-260 63-217 (394)
133 2o6r_A Variable lymphocyte rec 99.6 1.9E-14 6.5E-19 126.2 15.2 136 69-219 5-140 (177)
134 4fdw_A Leucine rich hypothetic 99.6 2.1E-13 7.2E-18 135.2 23.2 240 228-501 136-381 (401)
135 2wfh_A SLIT homolog 2 protein 99.6 2E-14 6.8E-19 127.8 14.2 126 110-239 13-138 (193)
136 4fdw_A Leucine rich hypothetic 99.5 6E-13 2.1E-17 131.9 22.8 252 226-513 112-368 (401)
137 1a9n_A U2A', U2A'; complex (nu 99.5 1.3E-14 4.4E-19 127.1 9.5 134 366-504 15-154 (176)
138 1a9n_A U2A', U2A'; complex (nu 99.5 6.9E-14 2.3E-18 122.5 9.5 61 104-168 16-77 (176)
139 1ds9_A Outer arm dynein; leuci 99.5 6.6E-16 2.3E-20 138.2 -4.7 133 365-504 43-186 (198)
140 1ds9_A Outer arm dynein; leuci 99.5 5.7E-16 1.9E-20 138.7 -5.5 146 367-517 15-177 (198)
141 3g39_A Variable lymphocyte rec 99.4 5.2E-13 1.8E-17 116.0 11.6 107 372-481 11-117 (170)
142 2r9u_A Variable lymphocyte rec 99.4 1.4E-12 4.6E-17 113.8 11.7 105 373-480 15-119 (174)
143 4gt6_A Cell surface protein; l 99.4 7E-11 2.4E-15 117.4 25.1 331 148-502 56-390 (394)
144 3g39_A Variable lymphocyte rec 99.4 2.6E-12 9E-17 111.5 12.9 104 110-216 12-115 (170)
145 2r9u_A Variable lymphocyte rec 99.4 4.3E-12 1.5E-16 110.6 12.9 104 110-216 15-118 (174)
146 3un9_A NLR family member X1; l 99.3 3.7E-13 1.3E-17 132.2 1.2 183 322-504 71-284 (372)
147 4gt6_A Cell surface protein; l 99.3 1.1E-09 3.7E-14 108.8 25.5 311 172-503 56-370 (394)
148 3un9_A NLR family member X1; l 99.3 4.6E-13 1.6E-17 131.5 -0.6 134 347-480 127-284 (372)
149 2ifg_A High affinity nerve gro 99.2 1.1E-10 3.7E-15 114.0 10.8 104 374-480 12-117 (347)
150 2ifg_A High affinity nerve gro 99.1 1.7E-10 5.7E-15 112.6 11.1 105 349-456 11-117 (347)
151 4h09_A Hypothetical leucine ri 99.1 1.8E-08 6.3E-13 99.3 24.9 142 346-492 217-358 (379)
152 4h09_A Hypothetical leucine ri 99.0 1.7E-07 5.8E-12 92.3 25.5 100 364-466 257-356 (379)
153 2ra8_A Uncharacterized protein 98.9 2.8E-10 9.6E-15 110.7 3.5 58 151-211 168-227 (362)
154 2ra8_A Uncharacterized protein 98.9 1.3E-09 4.3E-14 106.1 5.9 59 441-501 278-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.7 9.1E-09 3.1E-13 90.3 3.9 115 389-503 31-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 5.2E-08 1.8E-12 85.4 4.2 116 364-479 30-164 (185)
157 3rw6_A Nuclear RNA export fact 98.4 4.5E-08 1.5E-12 90.2 1.5 80 415-496 167-257 (267)
158 3rw6_A Nuclear RNA export fact 98.3 2E-07 7E-12 85.8 2.1 82 391-473 167-258 (267)
159 3e4g_A ATP synthase subunit S, 98.3 2.1E-07 7.3E-12 79.5 1.9 85 393-477 60-150 (176)
160 3e4g_A ATP synthase subunit S, 98.2 3.8E-07 1.3E-11 77.9 2.7 84 370-453 61-150 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.5 5E-05 1.7E-09 66.1 3.9 110 393-502 40-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 0.00015 5.2E-09 63.0 4.2 112 367-478 38-169 (197)
163 3rfe_A Platelet glycoprotein I 96.2 0.009 3.1E-07 48.2 6.5 56 398-455 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.2 0.011 3.9E-07 47.6 6.9 57 421-479 11-68 (130)
165 2lz0_A Uncharacterized protein 46.6 44 0.0015 24.8 5.8 37 197-234 14-50 (100)
166 2lz0_A Uncharacterized protein 44.2 58 0.002 24.1 6.1 40 268-308 13-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.5e-64 Score=548.50 Aligned_cols=475 Identities=32% Similarity=0.460 Sum_probs=290.3
Q ss_pred HhhcCCCCHHHHHHHHHHHHhcCCCCCCCCCCCcCCCCCCCCCCCCCccCceeeCCCCCEEEEEcCCCCCccc---cCC-
Q 037558 25 LITVSSEPNEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCAWYGISCNDAGRVINISLRNTGLSGT---LHG- 100 (518)
Q Consensus 25 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~c~w~g~~c~~~~~v~~l~l~~~~~~~~---~~~- 100 (518)
+++++++.++|++||++||+++.+ +. .+.+|..+ .|||.|.||+|+ .++|++++|+++++.|. +++
T Consensus 3 ~~~~~~~~~~~~~all~~k~~~~~-~~-~l~~W~~~-------~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~ 72 (768)
T 3rgz_A 3 QASPSQSLYREIHQLISFKDVLPD-KN-LLPDWSSN-------KNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSS 72 (768)
T ss_dssp -----CCHHHHHHHHHHHHTTCSC-TT-SSTTCCTT-------SCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHH
T ss_pred cCccccCCHHHHHHHHHHHhhCCC-cc-cccCCCCC-------CCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChh
Confidence 445556678899999999999984 55 88999855 689999999998 78999999999998886 332
Q ss_pred ---------------------ccCCCCCCCcEEeCCCCCCcccCCc--cccCCCCCCEEECCCCCCCcCCCccC-CCCCC
Q 037558 101 ---------------------FSFSSFPRLAYLDLTGSGLFGTIPP--EVGLLSHLKFLFIDTNKLDGSIPPEV-GQLSS 156 (518)
Q Consensus 101 ---------------------~~l~~l~~L~~L~L~~~~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~p~~l-~~l~~ 156 (518)
..+..+++|++|+|++|.+.+.+|. .++.+++|++|++++|.+.+.+|..+ .++++
T Consensus 73 l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 152 (768)
T 3rgz_A 73 LLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152 (768)
T ss_dssp TTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTT
T ss_pred HhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCC
Confidence 2678889999999999999888887 88999999999999998887777765 77888
Q ss_pred CcEEEccCCCCCccCCcC---CcCCCCC----------------------CEEEccCccccccCCccccCCCCCcEEEcc
Q 037558 157 MEVFFLCSNYLNGSVPPS---LGNLSHI----------------------SLLFIYDNLFSGFIPSDIGNSKSIFNLDLS 211 (518)
Q Consensus 157 L~~L~L~~n~~~~~~p~~---l~~l~~L----------------------~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 211 (518)
|++|++++|.+.+..|.. +.++++| ++|++++|.+.+.+|. ++++++|++|+++
T Consensus 153 L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls 231 (768)
T 3rgz_A 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDIS 231 (768)
T ss_dssp CSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECC
T ss_pred CCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECc
Confidence 888888888777655544 4444444 4444444444444443 5555555555555
Q ss_pred cCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCC-CCCcEEEccCCcCccc
Q 037558 212 SNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNL-TSLSTLRLSKNELFGS 290 (518)
Q Consensus 212 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~n~l~~~ 290 (518)
+|.+++.+|..+..+++|++|++++|.+.+..|.. .+++|++|++++|.+++.+|..+... ++|++|++++|.+++.
T Consensus 232 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~ 309 (768)
T 3rgz_A 232 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309 (768)
T ss_dssp SSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC
T ss_pred CCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCc
Confidence 55555555555555555555555555554433332 34444444444444444555555443 6666666666666666
Q ss_pred CccccCCCCCccEEEccCCcccccCCcc-CcCCCCCCeeecccccccccCCccccc-c-cCcEEEccCccCcc-------
Q 037558 291 IPDEIGKMRSLSVLDLNENQFKGVLPPS-ISNLTNLKELALLYNHLSGSIPPSLGN-L-ILRELLLSGNHFAG------- 360 (518)
Q Consensus 291 ~p~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~p~~~~~-~-~L~~L~l~~n~~~~------- 360 (518)
+|..++.+++|++|++++|.+.+.+|.. +..+++|++|++++|.+++.+|..+.. . .|++|++++|.+.+
T Consensus 310 ~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~ 389 (768)
T 3rgz_A 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTT
T ss_pred cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhh
Confidence 6666666666666666666666555544 556666666666666666555554433 2 45555555554444
Q ss_pred -------------------cCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCC
Q 037558 361 -------------------YLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLT 421 (518)
Q Consensus 361 -------------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 421 (518)
.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|++++.+|..+..+++|+
T Consensus 390 ~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 469 (768)
T 3rgz_A 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469 (768)
T ss_dssp CSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred hcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCce
Confidence 4444444444444555555544444444444455555555555555544455555555555
Q ss_pred EEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCc
Q 037558 422 FIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQ 501 (518)
Q Consensus 422 ~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 501 (518)
+|++++|++.+.+|..+..+++|++|++++|++.+.+|.++..+++|++|++++|++.+.+|..++.+++|++|++++|+
T Consensus 470 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred EEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 55555555554455555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cccccCccCcc
Q 037558 502 RAVTLSFINKV 512 (518)
Q Consensus 502 ~~~~ip~~l~~ 512 (518)
+.|.+|..+.+
T Consensus 550 l~g~ip~~~~~ 560 (768)
T 3rgz_A 550 FNGTIPAAMFK 560 (768)
T ss_dssp EESBCCGGGGT
T ss_pred cCCcCChHHhc
Confidence 55555554443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.1e-56 Score=484.55 Aligned_cols=432 Identities=30% Similarity=0.450 Sum_probs=255.0
Q ss_pred CCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEE
Q 037558 82 GRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF 161 (518)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 161 (518)
.+++.++++++.+.+.++. +.++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|.. .+++|++|+
T Consensus 200 ~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~ 275 (768)
T 3rgz_A 200 VNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLS 275 (768)
T ss_dssp TTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEE
T ss_pred CcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEE
Confidence 3556666666666655543 666666666666666666666666666666666666666666555543 566666666
Q ss_pred ccCCCCCccCCcCCcCC-CCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchh-ccCCCCCcEEEcccCcC
Q 037558 162 LCSNYLNGSVPPSLGNL-SHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLF-FGNLSNLKSLYLYGNSL 239 (518)
Q Consensus 162 L~~n~~~~~~p~~l~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~~ 239 (518)
+++|.+.+.+|..+.+. ++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|.. +..+++|++|++++|.+
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 66666666666666554 67777777777777666777777777777777777776556654 66677777777777766
Q ss_pred CccccccccCCC-CCCEeeCcCCCCccCCcccccC--CCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCC
Q 037558 240 SSPILSSLGKFK-SLIDLQLNENQFTGYIPRSFGN--LTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLP 316 (518)
Q Consensus 240 ~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~--l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~ 316 (518)
++.+|..+..++ +|++|++++|.+.+.+|..+.. +++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|
T Consensus 356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 435 (768)
T 3rgz_A 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435 (768)
T ss_dssp EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCccc
Confidence 665666555554 5555555555555444444433 4455555555555555555555555556666666555555555
Q ss_pred ccCcCCCCCCeeecccccccccCCccccc-ccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCC
Q 037558 317 PSISNLTNLKELALLYNHLSGSIPPSLGN-LILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTS 395 (518)
Q Consensus 317 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 395 (518)
..+..+++|+.|++++|.+.+.+|..+.. ++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|.++..+++
T Consensus 436 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 515 (768)
T 3rgz_A 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCC
Confidence 55555555555555555555555554443 55555555555555555555555555555555555555555555555555
Q ss_pred CcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccc-------------------------------------
Q 037558 396 LIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNW------------------------------------- 438 (518)
Q Consensus 396 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~------------------------------------- 438 (518)
|++|++++|++++.+|..+..+++|+.|++++|++.|.+|..+
T Consensus 516 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (768)
T 3rgz_A 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595 (768)
T ss_dssp CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEE
T ss_pred CCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccc
Confidence 5555555555555555555555555555555555544433221
Q ss_pred ---------------------------------cCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCcc
Q 037558 439 ---------------------------------GKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKE 485 (518)
Q Consensus 439 ---------------------------------~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 485 (518)
..+++|+.|++++|+++|.+|..++.++.|+.|+|++|+++|.+|..
T Consensus 596 ~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~ 675 (768)
T 3rgz_A 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675 (768)
T ss_dssp CTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred cccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChH
Confidence 12344555555555555555555555555555555555555555555
Q ss_pred ccCCCCCCEEECcCCccccccCccCccCCCCC
Q 037558 486 LGKLNSLTKLILRGNQRAVTLSFINKVCSSLE 517 (518)
Q Consensus 486 l~~l~~L~~L~l~~n~~~~~ip~~l~~l~~L~ 517 (518)
++++++|++||+++|++.|.||..+.++++|+
T Consensus 676 l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 676 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp GGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred HhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 55555555555555555555555555555443
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.5e-56 Score=469.75 Aligned_cols=454 Identities=22% Similarity=0.303 Sum_probs=386.9
Q ss_pred CHHHHHHHHHHHHhcCCCCCCC-------CCCCcCCCCCCCCCCCCCcc---CceeeCCCCCEEEEEcCCCCCccccCCc
Q 037558 32 PNEEADTLLKWKASLQSRNQSR-------LPSWTKATTNVSSKISPCAW---YGISCNDAGRVINISLRNTGLSGTLHGF 101 (518)
Q Consensus 32 ~~~~~~~l~~~~~~~~~~~~~~-------~~~W~~~~~~~~~~~~~c~w---~g~~c~~~~~v~~l~l~~~~~~~~~~~~ 101 (518)
...|++||.++++++..++|.. ..+|+.+ .++|.| .||+|+..++|++|+|+++++.|.+|+
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~-------~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~- 99 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN-------KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD- 99 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCS-------SCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECG-
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC-------CCcccccCCCCeEEcCCCCEEEEEecCcccCCcCCh-
Confidence 3468899999999987654432 2367654 789999 999998889999999999999999998
Q ss_pred cCCCCCCCcEEeCCCCCC------cc---------------------------cCCcccc-------------------C
Q 037558 102 SFSSFPRLAYLDLTGSGL------FG---------------------------TIPPEVG-------------------L 129 (518)
Q Consensus 102 ~l~~l~~L~~L~L~~~~~------~~---------------------------~~~~~~~-------------------~ 129 (518)
.++++++|++|+|++|.+ .+ ..+..+. .
T Consensus 100 ~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 179 (636)
T 4eco_A 100 AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179 (636)
T ss_dssp GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCC
T ss_pred HHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccc
Confidence 999999999999999965 11 0111111 1
Q ss_pred CCCCCEEECC--CCCCCcCCCccCCCCCCCcEEEccCCCCCcc-----------------CCcCCc--CCCCCCEEEccC
Q 037558 130 LSHLKFLFID--TNKLDGSIPPEVGQLSSMEVFFLCSNYLNGS-----------------VPPSLG--NLSHISLLFIYD 188 (518)
Q Consensus 130 l~~L~~L~l~--~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~-----------------~p~~l~--~l~~L~~L~l~~ 188 (518)
...++.+.+. +|.+++ +|..++++++|++|++++|.+.+. +|..++ ++++|++|++++
T Consensus 180 ~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~ 258 (636)
T 4eco_A 180 RITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN 258 (636)
T ss_dssp CCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEEC
T ss_pred ccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecC
Confidence 1223333333 578887 899999999999999999999985 999999 999999999999
Q ss_pred ccccccCCccccCCCCCcEEEcccCc-CCC-CcchhccCC------CCCcEEEcccCcCCccccc--cccCCCCCCEeeC
Q 037558 189 NLFSGFIPSDIGNSKSIFNLDLSSNQ-FSG-PIPLFFGNL------SNLKSLYLYGNSLSSPILS--SLGKFKSLIDLQL 258 (518)
Q Consensus 189 n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~~l~~l------~~L~~L~l~~n~~~~~~~~--~l~~l~~L~~L~l 258 (518)
|.+.+.+|..++++++|++|++++|. +++ .+|..++.+ ++|++|++++|.++ .+|. .++++++|++|++
T Consensus 259 n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L 337 (636)
T 4eco_A 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLEC 337 (636)
T ss_dssp CTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEEC
T ss_pred CcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeC
Confidence 99999999999999999999999998 888 788888776 99999999999999 6887 8999999999999
Q ss_pred cCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCC-ccEEEccCCcccccCCccCcCCC--CCCeeecccccc
Q 037558 259 NENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRS-LSVLDLNENQFKGVLPPSISNLT--NLKELALLYNHL 335 (518)
Q Consensus 259 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~-L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~l~~n~l 335 (518)
++|.+.|.+| .+..+++|++|++++|+++ .+|..+..+++ |++|++++|.+. .+|..+..++ +|+.|++++|.+
T Consensus 338 ~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 338 LYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp CSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCT
T ss_pred cCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcC
Confidence 9999998888 8899999999999999998 88888999999 999999999999 7888776654 899999999999
Q ss_pred cccCCcccc-------c-ccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhc-C-------CCCcEE
Q 037558 336 SGSIPPSLG-------N-LILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRN-C-------TSLIRV 399 (518)
Q Consensus 336 ~~~~p~~~~-------~-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l-------~~L~~L 399 (518)
++.+|..+. . .+|+.|++++|.+.+..+..+..+++|+.|++++|.+. .+|..... . ++|++|
T Consensus 415 ~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L 493 (636)
T 4eco_A 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSI 493 (636)
T ss_dssp TTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEE
T ss_pred CCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEE
Confidence 988887665 3 68999999999999655555667899999999999998 55554332 2 299999
Q ss_pred EcccCccccccChhhh--CCCCCCEEecccCccccccCccccCCCCCCEEEc------cCCccccCccccccCCCCCCEE
Q 037558 400 HLNGNNLTGNISEALA--IYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNV------SMNNITGGIPREIGNSSQLQAL 471 (518)
Q Consensus 400 ~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l------s~n~l~~~~~~~~~~l~~L~~L 471 (518)
++++|+++ .+|..+. .+++|+.|++++|++.+ +|..+..+++|++|++ ++|++.+.+|..+..+++|++|
T Consensus 494 ~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L 571 (636)
T 4eco_A 494 DLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571 (636)
T ss_dssp ECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred ECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEE
Confidence 99999999 6777776 89999999999999997 8888999999999999 5677888999999999999999
Q ss_pred eCcCCcCcccCCccccCCCCCCEEECcCCcccc
Q 037558 472 DLSLNHIVGEIPKELGKLNSLTKLILRGNQRAV 504 (518)
Q Consensus 472 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 504 (518)
++++|++ +.+|..+. ++|+.|++++|++..
T Consensus 572 ~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 572 QIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp ECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred ECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 9999999 68888766 899999999998753
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.8e-54 Score=465.26 Aligned_cols=455 Identities=19% Similarity=0.267 Sum_probs=384.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCCCCcCCCCCCCCCCCC--Ccc------------CceeeCCCCCEEEEEcCCCCCcc
Q 037558 31 EPNEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISP--CAW------------YGISCNDAGRVINISLRNTGLSG 96 (518)
Q Consensus 31 ~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~--c~w------------~g~~c~~~~~v~~l~l~~~~~~~ 96 (518)
+..+|++||++||+++.+ + +|+..+. |...+| |.| .||.|+..++|++|+|+++++.|
T Consensus 266 ~~~~d~~ALl~~k~~l~~-~-----~W~~~~~--~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G 337 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALDG-K-----NWRYYSG--TINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKG 337 (876)
T ss_dssp HHHHHHHHHHHHHHHTTG-G-----GCCCCCS--SCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEE
T ss_pred cchHHHHHHHHHHHHcCC-C-----CCCcCCC--cccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCC
Confidence 445789999999999965 2 7865410 111245 999 99999888999999999999999
Q ss_pred ccCCccCCCCCCCcEEeC-CCCCCcccCCcc-------------------------------------------------
Q 037558 97 TLHGFSFSSFPRLAYLDL-TGSGLFGTIPPE------------------------------------------------- 126 (518)
Q Consensus 97 ~~~~~~l~~l~~L~~L~L-~~~~~~~~~~~~------------------------------------------------- 126 (518)
.+|+ .++++++|++|+| ++|.+.|..+..
T Consensus 338 ~ip~-~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~ 416 (876)
T 4ecn_A 338 RVPD-AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416 (876)
T ss_dssp EECG-GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred cCch-HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence 9998 9999999999999 888766552211
Q ss_pred --ccCCCCCCEEECCC--CCCCcCCCccCCCCCCCcEEEccCCCCCc-----------------cCCcCCc--CCCCCCE
Q 037558 127 --VGLLSHLKFLFIDT--NKLDGSIPPEVGQLSSMEVFFLCSNYLNG-----------------SVPPSLG--NLSHISL 183 (518)
Q Consensus 127 --~~~l~~L~~L~l~~--n~~~~~~p~~l~~l~~L~~L~L~~n~~~~-----------------~~p~~l~--~l~~L~~ 183 (518)
......++.+.+.. |.+++ +|..++++++|++|+|++|.+.+ .+|..++ ++++|++
T Consensus 417 i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~ 495 (876)
T 4ecn_A 417 IKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495 (876)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCE
T ss_pred cccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCE
Confidence 01222344444444 77886 89999999999999999999998 3899988 9999999
Q ss_pred EEccCccccccCCccccCCCCCcEEEcccCc-CCC-CcchhccCCC-------CCcEEEcccCcCCccccc--cccCCCC
Q 037558 184 LFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQ-FSG-PIPLFFGNLS-------NLKSLYLYGNSLSSPILS--SLGKFKS 252 (518)
Q Consensus 184 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~-~~~~~l~~l~-------~L~~L~l~~n~~~~~~~~--~l~~l~~ 252 (518)
|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.++ +|++|++++|.++ .+|. .++++++
T Consensus 496 L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~ 574 (876)
T 4ecn_A 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK 574 (876)
T ss_dssp EEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTT
T ss_pred EECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCC
Confidence 9999999999999999999999999999998 887 7887666554 9999999999999 6888 8999999
Q ss_pred CCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCC-ccEEEccCCcccccCCccCcCCCC--CCeee
Q 037558 253 LIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRS-LSVLDLNENQFKGVLPPSISNLTN--LKELA 329 (518)
Q Consensus 253 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~-L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~ 329 (518)
|+.|++++|.++ .+| .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.+. .+|..+..++. |+.|+
T Consensus 575 L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~ 650 (876)
T 4ecn_A 575 LGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVD 650 (876)
T ss_dssp CCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEE
T ss_pred CCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEE
Confidence 999999999999 778 7999999999999999998 88988999999 999999999998 78887776654 99999
Q ss_pred cccccccccCCccc------ccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcC--------CC
Q 037558 330 LLYNHLSGSIPPSL------GNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNC--------TS 395 (518)
Q Consensus 330 l~~n~l~~~~p~~~------~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l--------~~ 395 (518)
+++|.+.+.+|... ...+|+.|++++|.+....+..+..+++|+.|++++|.+. .+|..+... ++
T Consensus 651 Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~ 729 (876)
T 4ecn_A 651 FSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYL 729 (876)
T ss_dssp CCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGG
T ss_pred CcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCC
Confidence 99999998776543 2257999999999999544444558899999999999998 666655432 38
Q ss_pred CcEEEcccCccccccChhhh--CCCCCCEEecccCccccccCccccCCCCCCEEEccC------CccccCccccccCCCC
Q 037558 396 LIRVHLNGNNLTGNISEALA--IYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSM------NNITGGIPREIGNSSQ 467 (518)
Q Consensus 396 L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~------n~l~~~~~~~~~~l~~ 467 (518)
|+.|+|++|+++ .+|..+. .+++|+.|+|++|++.+ +|..+..+++|+.|++++ |.+.+.+|..+..+++
T Consensus 730 L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~ 807 (876)
T 4ecn_A 730 LTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS 807 (876)
T ss_dssp CCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSS
T ss_pred ccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCC
Confidence 999999999999 6777776 89999999999999997 788889999999999976 7788899999999999
Q ss_pred CCEEeCcCCcCcccCCccccCCCCCCEEECcCCcccccc
Q 037558 468 LQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTL 506 (518)
Q Consensus 468 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~i 506 (518)
|+.|+|++|++ +.+|..+. ++|+.|+|++|++...-
T Consensus 808 L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 808 LIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISID 843 (876)
T ss_dssp CCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred CCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccC
Confidence 99999999999 68888765 69999999999986433
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.2e-50 Score=429.47 Aligned_cols=431 Identities=19% Similarity=0.192 Sum_probs=273.7
Q ss_pred CCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEE
Q 037558 82 GRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF 161 (518)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 161 (518)
..++.++++++.+.+..+. .|.++++|++|++++|.+.+..|..|..+++|++|++++|.+.+..|..|+++++|++|+
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNT-TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TTCCEEECTTCCCSEECTT-TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CcCcEEEccCCccCcCChh-HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 4789999999999977666 899999999999999999988899999999999999999999988899999999999999
Q ss_pred ccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCc--EEEcccCcC
Q 037558 162 LCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLK--SLYLYGNSL 239 (518)
Q Consensus 162 L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~--~L~l~~n~~ 239 (518)
+++|.+.+..+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+++..+..++.+++|+ .|++++|.+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 999999976678899999999999999999875545566699999999999999987788888888888 788888877
Q ss_pred CccccccccCC---------------------------------------------------CCCCEeeCcCCCCccCCc
Q 037558 240 SSPILSSLGKF---------------------------------------------------KSLIDLQLNENQFTGYIP 268 (518)
Q Consensus 240 ~~~~~~~l~~l---------------------------------------------------~~L~~L~l~~n~~~~~~~ 268 (518)
.+..+..+... .+++.|++++|.+.+..+
T Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271 (606)
T ss_dssp CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence 66544332210 034445555555554444
Q ss_pred ccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCcc-ccc-c
Q 037558 269 RSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPS-LGN-L 346 (518)
Q Consensus 269 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~-~ 346 (518)
..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|.. +.. +
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 44555555555555555554 44555555555555555555555444444555555555555555544443332 222 4
Q ss_pred cCcEEEccCccCcccC--chhhcCCCCccEEecCCCcCccccChhhh-------------------------cCCCCcEE
Q 037558 347 ILRELLLSGNHFAGYL--PYNICQGGALEIFTVSENHFQGTIPTSVR-------------------------NCTSLIRV 399 (518)
Q Consensus 347 ~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-------------------------~l~~L~~L 399 (518)
+|++|++++|.+.+.. +..+..+++|+.|++++|.+.+..|..+. .+++|++|
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence 4555555555444433 33444444444444444444444444444 44555555
Q ss_pred EcccCccccccChhhhCCCCCCEEecccCccccc---cCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCC
Q 037558 400 HLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGE---ISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLN 476 (518)
Q Consensus 400 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~---~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n 476 (518)
++++|.+++..+..+..+++|++|++++|++.+. .+..+..+++|++|++++|++++..|..+..+++|++|++++|
T Consensus 431 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 5555555444444445555555555555554431 1233444555555555555555444444555555555555555
Q ss_pred cCcccCCccccCCCCCCEEECcCCccccccCccCccCCC
Q 037558 477 HIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINKVCSS 515 (518)
Q Consensus 477 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip~~l~~l~~ 515 (518)
++.+..|..+.+++.| +|++++|++.+.+|..+..+++
T Consensus 511 ~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~ 548 (606)
T 3t6q_A 511 RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQ 548 (606)
T ss_dssp CCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHT
T ss_pred ccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCC
Confidence 5555555555555555 5555555555444444443333
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.6e-49 Score=421.02 Aligned_cols=424 Identities=20% Similarity=0.191 Sum_probs=354.7
Q ss_pred CCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEE
Q 037558 81 AGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVF 160 (518)
Q Consensus 81 ~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L 160 (518)
..+++.++++++.+.+..+. .|.++++|++|++++|.+.+..|..++.+++|++|++++|.+++..|..++++++|++|
T Consensus 56 l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L 134 (606)
T 3t6q_A 56 LINLTFLDLTRCQIYWIHED-TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL 134 (606)
T ss_dssp CTTCSEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEE
T ss_pred CccceEEECCCCccceeChh-hccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEE
Confidence 35788999999998876666 88999999999999999988888889999999999999999986667778999999999
Q ss_pred EccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCc--EEEcccCcCCCCc-------------------
Q 037558 161 FLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIF--NLDLSSNQFSGPI------------------- 219 (518)
Q Consensus 161 ~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~--~L~l~~n~~~~~~------------------- 219 (518)
++++|.+.+..++.+..+++|++|++++|.+.+..+..++.+++|+ +|++++|.+.+..
T Consensus 135 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~ 214 (606)
T 3t6q_A 135 YLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214 (606)
T ss_dssp ECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSC
T ss_pred ECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchh
Confidence 9999998864444555588999999999888877777777777777 6666666554333
Q ss_pred --------------------------------------------------------chhccCCCCCcEEEcccCcCCccc
Q 037558 220 --------------------------------------------------------PLFFGNLSNLKSLYLYGNSLSSPI 243 (518)
Q Consensus 220 --------------------------------------------------------~~~l~~l~~L~~L~l~~n~~~~~~ 243 (518)
+..++.+++|++|++++|.++. +
T Consensus 215 ~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-l 293 (606)
T 3t6q_A 215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-L 293 (606)
T ss_dssp HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC-C
T ss_pred HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCC-C
Confidence 3335566777777777777763 6
Q ss_pred cccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCcc-ccCCCCCccEEEccCCcccccC--CccCc
Q 037558 244 LSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPD-EIGKMRSLSVLDLNENQFKGVL--PPSIS 320 (518)
Q Consensus 244 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~l~~L~~L~l~~n~l~~~~--~~~l~ 320 (518)
|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+.. +..+.
T Consensus 294 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 373 (606)
T 3t6q_A 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373 (606)
T ss_dssp CSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTT
T ss_pred ChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcc
Confidence 66777777888888888877776677777788888888888877655554 3777888888888888887654 66788
Q ss_pred CCCCCCeeecccccccccCCccccc-ccCcEEEccCccCcccCch-hhcCCCCccEEecCCCcCccccChhhhcCCCCcE
Q 037558 321 NLTNLKELALLYNHLSGSIPPSLGN-LILRELLLSGNHFAGYLPY-NICQGGALEIFTVSENHFQGTIPTSVRNCTSLIR 398 (518)
Q Consensus 321 ~l~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 398 (518)
.+++|++|++++|.+.+..|..+.. ++|+.|++++|.+.+..+. .+..+++|+.|++++|.+.+..|..+..+++|++
T Consensus 374 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 453 (606)
T 3t6q_A 374 NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453 (606)
T ss_dssp TCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCE
T ss_pred cCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCE
Confidence 8889999999999888777777665 8899999999998877654 4888999999999999999888999999999999
Q ss_pred EEcccCccccc---cChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcC
Q 037558 399 VHLNGNNLTGN---ISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSL 475 (518)
Q Consensus 399 L~L~~n~l~~~---~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~ 475 (518)
|++++|++++. .+..+..+++|++|++++|++.+..|..+..+++|++|++++|++++..|..+.+++.| .|++++
T Consensus 454 L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~ 532 (606)
T 3t6q_A 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLAS 532 (606)
T ss_dssp EECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCS
T ss_pred EECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcC
Confidence 99999999873 23678999999999999999998889999999999999999999999999999999999 999999
Q ss_pred CcCcccCCccccCCCCCCEEECcCCccccccC
Q 037558 476 NHIVGEIPKELGKLNSLTKLILRGNQRAVTLS 507 (518)
Q Consensus 476 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip 507 (518)
|++++..|..+..+++|++|++++|++.+..+
T Consensus 533 N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 533 NHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp SCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99999989889999999999999999988765
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.3e-48 Score=414.03 Aligned_cols=426 Identities=20% Similarity=0.154 Sum_probs=328.7
Q ss_pred CCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEE
Q 037558 82 GRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF 161 (518)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 161 (518)
.+++.++++++.+.+..+. .|.++++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..|+++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSY-SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChh-hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 5789999999999877665 899999999999999999988888999999999999999999988899999999999999
Q ss_pred ccCCCCCccCCcCCcCCCCCCEEEccCccccc-cCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCc----EEEccc
Q 037558 162 LCSNYLNGSVPPSLGNLSHISLLFIYDNLFSG-FIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLK----SLYLYG 236 (518)
Q Consensus 162 L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~----~L~l~~ 236 (518)
+++|.+.+..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+.+|+ +|++++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 99999997777889999999999999999986 5699999999999999999999877666665544433 566666
Q ss_pred CcCCcccccccc--------------------------------------------------------------------
Q 037558 237 NSLSSPILSSLG-------------------------------------------------------------------- 248 (518)
Q Consensus 237 n~~~~~~~~~l~-------------------------------------------------------------------- 248 (518)
|.+++..+..+.
T Consensus 191 n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 270 (606)
T 3vq2_A 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270 (606)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECC
T ss_pred CCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccc
Confidence 665543333332
Q ss_pred ------------CCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCC
Q 037558 249 ------------KFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLP 316 (518)
Q Consensus 249 ------------~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~ 316 (518)
.+++|+.|+++++.+. .+| .+..+++|++|++++|.+ +.+|. + .+++|++|++++|...+..
T Consensus 271 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~- 344 (606)
T 3vq2_A 271 TNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF- 344 (606)
T ss_dssp CTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC-
T ss_pred cccccccccccccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch-
Confidence 2334444444444443 223 455555666666666666 35552 3 5666666666666444332
Q ss_pred ccCcCCCCCCeeeccccccccc--CCccccc-ccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccC-hhhhc
Q 037558 317 PSISNLTNLKELALLYNHLSGS--IPPSLGN-LILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIP-TSVRN 392 (518)
Q Consensus 317 ~~l~~l~~L~~L~l~~n~l~~~--~p~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~ 392 (518)
.+..+++|++|++++|.+++. .|..+.. +.|++|++++|.+.+ +|..+..+++|+.|++++|.+.+..| ..+..
T Consensus 345 -~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 422 (606)
T 3vq2_A 345 -KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLS 422 (606)
T ss_dssp -CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTT
T ss_pred -hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhc
Confidence 455677777777777777654 2444433 678888888877665 44667777888888888888877666 57778
Q ss_pred CCCCcEEEcccCccccccChhhhCCCCCCEEecccCcccc-ccCccccCCCCCCEEEccCCccccCccccccCCCCCCEE
Q 037558 393 CTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYG-EISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQAL 471 (518)
Q Consensus 393 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L 471 (518)
+++|++|++++|++++..+..+..+++|++|++++|++.+ .+|..+..+++|++|++++|++++..|..+..+++|++|
T Consensus 423 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 502 (606)
T 3vq2_A 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502 (606)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEE
Confidence 8888888888888888888888888888888888888887 367778888888888888888887777888888888888
Q ss_pred eCcCCcCcccCCccccCCCCCCEEECcCCccccccCccCccCC-CCC
Q 037558 472 DLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINKVCS-SLE 517 (518)
Q Consensus 472 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip~~l~~l~-~L~ 517 (518)
++++|++.+..|..+..+++|++|++++|++. .+|..+..++ +|+
T Consensus 503 ~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~ 548 (606)
T 3vq2_A 503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLA 548 (606)
T ss_dssp ECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCC
T ss_pred ECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCc
Confidence 88888888888888888888888888888886 6777776665 354
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.6e-47 Score=411.02 Aligned_cols=436 Identities=20% Similarity=0.152 Sum_probs=273.2
Q ss_pred CCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEE
Q 037558 81 AGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVF 160 (518)
Q Consensus 81 ~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L 160 (518)
..+++.++++++.+.+..+. .|.++++|++|++++|.+.+..|..++.+++|++|++++|.+++..+..|+++++|++|
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAA-NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGG-GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred CCCCcEEECCCCCCCCcCHH-HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence 35789999999988875554 78899999999999999988888888999999999999999885444568999999999
Q ss_pred EccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhcc--CCCCCcEEEcccCc
Q 037558 161 FLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFG--NLSNLKSLYLYGNS 238 (518)
Q Consensus 161 ~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L~l~~n~ 238 (518)
++++|.+.+..|..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+. .+++|++|++++|.
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 9999998876667889999999999999999888888888899999999998888876665543 45677777777777
Q ss_pred CCcccccccc---------------------------------------------------CCC--CCCEeeCcCCCCcc
Q 037558 239 LSSPILSSLG---------------------------------------------------KFK--SLIDLQLNENQFTG 265 (518)
Q Consensus 239 ~~~~~~~~l~---------------------------------------------------~l~--~L~~L~l~~n~~~~ 265 (518)
+++..+..+. .++ +|++|++++|.+.+
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence 6655444333 222 25556666665555
Q ss_pred CCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccc-----cCCc----cCcCCCCCCeeeccccccc
Q 037558 266 YIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKG-----VLPP----SISNLTNLKELALLYNHLS 336 (518)
Q Consensus 266 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-----~~~~----~l~~l~~L~~L~l~~n~l~ 336 (518)
..|..+..+++|++|++++|.+.+..|..+..+++|++|++++|...+ .+|. .+..+++|++|++++|.++
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~ 342 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence 555555566666666666665554444433333333333332221110 0110 2233334444444444443
Q ss_pred ccCCccccc-----------------------------ccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccC
Q 037558 337 GSIPPSLGN-----------------------------LILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIP 387 (518)
Q Consensus 337 ~~~p~~~~~-----------------------------~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 387 (518)
+..+..+.. ..++.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|
T Consensus 343 ~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 422 (680)
T 1ziw_A 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECC
T ss_pred CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccC
Confidence 332222211 245555555555555556666666677777777776665444
Q ss_pred -hhhhcCCCCcEEEcccCcccccc--------------------------ChhhhCCCCCCEEecccCccccccCccccC
Q 037558 388 -TSVRNCTSLIRVHLNGNNLTGNI--------------------------SEALAIYPNLTFIDLSRNNFYGEISSNWGK 440 (518)
Q Consensus 388 -~~~~~l~~L~~L~L~~n~l~~~~--------------------------~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 440 (518)
..+..+++|++|++++|++.+.. |..+..+++|+.|++++|++++..+..+.+
T Consensus 423 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 502 (680)
T 1ziw_A 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG 502 (680)
T ss_dssp SGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc
Confidence 45556666666666666555433 344445555555555555555444445555
Q ss_pred CCCCCEEEccCCccccCcc--------ccccCCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCccccccCccCcc
Q 037558 441 CPKLDTLNVSMNNITGGIP--------REIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINKV 512 (518)
Q Consensus 441 ~~~L~~L~ls~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip~~l~~ 512 (518)
+++|++|++++|++.+..+ ..+..+++|++|++++|++....+..+.++++|++|++++|++.+..|..+.+
T Consensus 503 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 582 (680)
T 1ziw_A 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582 (680)
T ss_dssp CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCC
Confidence 5556666666665553211 12455566666666666666333344666667777777777665433334455
Q ss_pred CCCCC
Q 037558 513 CSSLE 517 (518)
Q Consensus 513 l~~L~ 517 (518)
+++|+
T Consensus 583 l~~L~ 587 (680)
T 1ziw_A 583 QVSLK 587 (680)
T ss_dssp CTTCC
T ss_pred CCCCC
Confidence 55554
No 9
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-47 Score=402.69 Aligned_cols=421 Identities=21% Similarity=0.188 Sum_probs=282.4
Q ss_pred CCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEE
Q 037558 81 AGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVF 160 (518)
Q Consensus 81 ~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L 160 (518)
..+++.++++++.+.+..+. .|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|+++++|++|
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp CSSCCEEECCSCCCCEECTT-TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred cccccEEEccCCccCccChh-HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 35789999999999876665 89999999999999999988888889999999999999999997777899999999999
Q ss_pred EccCCCCCccCCcCCcCCCCCCEEEccCccccc-cCCccccCCCCCcEEEcccCcCCCCcchhccCCCCC----cEEEcc
Q 037558 161 FLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSG-FIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNL----KSLYLY 235 (518)
Q Consensus 161 ~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L----~~L~l~ 235 (518)
++++|.+.+..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+++| +.++++
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 999999986555579999999999999999987 468899999999999999999987777777777777 788888
Q ss_pred cCcCCccccccccCCCCCCEeeCcCC------------------------------------------------------
Q 037558 236 GNSLSSPILSSLGKFKSLIDLQLNEN------------------------------------------------------ 261 (518)
Q Consensus 236 ~n~~~~~~~~~l~~l~~L~~L~l~~n------------------------------------------------------ 261 (518)
+|.+.+..+..+... +|+.|++++|
T Consensus 186 ~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 186 LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence 888877665555443 4555555544
Q ss_pred ----CCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCcc-------------------
Q 037558 262 ----QFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPS------------------- 318 (518)
Q Consensus 262 ----~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~------------------- 318 (518)
.+.+..+..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+. .+|..
T Consensus 265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~ 341 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAF 341 (570)
T ss_dssp EETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBC
T ss_pred hcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCcccccc
Confidence 122233444555666667777666665 455555555 6666666666665 33331
Q ss_pred -CcCCCCCCeeecccccccccC--Cccccc-ccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccC-hhhhcC
Q 037558 319 -ISNLTNLKELALLYNHLSGSI--PPSLGN-LILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIP-TSVRNC 393 (518)
Q Consensus 319 -l~~l~~L~~L~l~~n~l~~~~--p~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l 393 (518)
...+++|++|++++|.+++.. |..+.. ++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..+ ..+..+
T Consensus 342 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 420 (570)
T 2z63_A 342 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSL 420 (570)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTC
T ss_pred ccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcC
Confidence 033444444444444444321 222211 4455555555554443332 4555555555555555554433 344555
Q ss_pred CCCcEEEcccCccccccChhhhCCCCCCEEecccCccc-cccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEe
Q 037558 394 TSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFY-GEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALD 472 (518)
Q Consensus 394 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~ 472 (518)
++|++|++++|++.+..+..+..+++|++|++++|.+. +.+|..+..+++|++|++++|++++..|..+..+++|++|+
T Consensus 421 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 500 (570)
T 2z63_A 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500 (570)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEe
Confidence 56666666666655555555555666666666666654 34555555566666666666666555555555666666666
Q ss_pred CcCCcCcccCCccccCCCCCCEEECcCCccccccC
Q 037558 473 LSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLS 507 (518)
Q Consensus 473 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip 507 (518)
+++|++.+..+..+..+++|++|++++|++.+.+|
T Consensus 501 l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 501 MASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 66666665555555566666666666666655554
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-46 Score=404.53 Aligned_cols=434 Identities=18% Similarity=0.169 Sum_probs=299.9
Q ss_pred CCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEE
Q 037558 82 GRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF 161 (518)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 161 (518)
.+++.++++++.+.+..+. .+.++++|++|++++|.+.+..+..|+.+++|++|++++|.+++..|..|+++++|++|+
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 127 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127 (680)
T ss_dssp TTCSEEECCSSCCCCCCTT-HHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE
T ss_pred CcCcEEECCCCccCccCHH-HHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEE
Confidence 4677777777777665554 667777777777777777654444677777777777777777755556677777777777
Q ss_pred ccCCCCCccCCcCCcCCCCCCEEEccCccccccCCcccc--CCCCCcEEEcccCcCC-----------------------
Q 037558 162 LCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIG--NSKSIFNLDLSSNQFS----------------------- 216 (518)
Q Consensus 162 L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~~n~~~----------------------- 216 (518)
+++|.+.+..|..+.++++|++|++++|.+++..+..+. .+++|++|++++|.++
T Consensus 128 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l 207 (680)
T 1ziw_A 128 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207 (680)
T ss_dssp CCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCC
T ss_pred CCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcccccc
Confidence 777777766666677777777777777766655444332 3345555555555444
Q ss_pred ----------------------------CCcchhccCCC--CCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccC
Q 037558 217 ----------------------------GPIPLFFGNLS--NLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGY 266 (518)
Q Consensus 217 ----------------------------~~~~~~l~~l~--~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 266 (518)
+..+..+..++ +|++|++++|.+++..+..++.+++|++|++++|.+.+.
T Consensus 208 ~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 287 (680)
T 1ziw_A 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287 (680)
T ss_dssp HHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE
T ss_pred ChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc
Confidence 33344444443 399999999999988888999999999999999998876
Q ss_pred CcccccCCCCCcEEEc---------------------------------cCCcCcccCccccCCCCCccEEEccCCc---
Q 037558 267 IPRSFGNLTSLSTLRL---------------------------------SKNELFGSIPDEIGKMRSLSVLDLNENQ--- 310 (518)
Q Consensus 267 ~~~~l~~l~~L~~L~l---------------------------------~~n~l~~~~p~~~~~l~~L~~L~l~~n~--- 310 (518)
.|..+..+++|++|++ ++|.+.+..+..+..+++|++|++++|.
T Consensus 288 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~ 367 (680)
T 1ziw_A 288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCC
T ss_pred ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhh
Confidence 6665555555555555 4444444444444444444444443332
Q ss_pred -------------------------ccccCCccCcCCCCCCeeecccccccccCCc-cccc-ccCcEEEccCccCcccCc
Q 037558 311 -------------------------FKGVLPPSISNLTNLKELALLYNHLSGSIPP-SLGN-LILRELLLSGNHFAGYLP 363 (518)
Q Consensus 311 -------------------------l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~-~~~~-~~L~~L~l~~n~~~~~~~ 363 (518)
+.+..|..+..+++|+.|++++|.+.+.+|. .+.. +.|++|++++|.+.+..+
T Consensus 368 ~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 447 (680)
T 1ziw_A 368 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTR 447 (680)
T ss_dssp CEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCT
T ss_pred hhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeCh
Confidence 2222333344444444444444444443332 2222 445555555555544444
Q ss_pred hhhcCCCCccEEecCCCcCc--cccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccC------
Q 037558 364 YNICQGGALEIFTVSENHFQ--GTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEIS------ 435 (518)
Q Consensus 364 ~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~------ 435 (518)
..+..+++|+.|++++|.+. +..|..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..+
T Consensus 448 ~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 527 (680)
T 1ziw_A 448 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGG 527 (680)
T ss_dssp TTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTS
T ss_pred hhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCC
Confidence 55555556666666666554 4577888899999999999999998888889999999999999999986422
Q ss_pred --ccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCccccccCccCc-c
Q 037558 436 --SNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINK-V 512 (518)
Q Consensus 436 --~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip~~l~-~ 512 (518)
..+.++++|++|++++|++....+..|..+++|++|++++|++++..+..+..+++|+.|++++|++.+..|..+. .
T Consensus 528 ~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 607 (680)
T 1ziw_A 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPA 607 (680)
T ss_dssp CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHH
T ss_pred cchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccc
Confidence 2378899999999999999954445689999999999999999977777789999999999999999887766554 4
Q ss_pred CCCC
Q 037558 513 CSSL 516 (518)
Q Consensus 513 l~~L 516 (518)
+++|
T Consensus 608 ~~~L 611 (680)
T 1ziw_A 608 FRNL 611 (680)
T ss_dssp HTTC
T ss_pred cccc
Confidence 4444
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.7e-47 Score=403.89 Aligned_cols=417 Identities=21% Similarity=0.194 Sum_probs=358.5
Q ss_pred CCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEE
Q 037558 81 AGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVF 160 (518)
Q Consensus 81 ~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L 160 (518)
..+++.++++++.+.+..+. .|.++++|++|++++|.+.+..|..|+.+++|++|++++|.+.+..+..++++++|++|
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 133 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDK-AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133 (606)
T ss_dssp CTTCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEE
T ss_pred CccCcEEeCCCCcccccCHH-HhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEE
Confidence 35899999999999876666 79999999999999999988889999999999999999999987777889999999999
Q ss_pred EccCCCCCc-cCCcCCcCCCCCCEEEccCccccccCCccccCCCCCc----EEEcccCcCCCCcchh-------------
Q 037558 161 FLCSNYLNG-SVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIF----NLDLSSNQFSGPIPLF------------- 222 (518)
Q Consensus 161 ~L~~n~~~~-~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~----~L~l~~n~~~~~~~~~------------- 222 (518)
++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+++|+ +|++++|.+++..+..
T Consensus 134 ~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~ 213 (606)
T 3vq2_A 134 NVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRG 213 (606)
T ss_dssp ECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEES
T ss_pred eCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccC
Confidence 999999986 6799999999999999999999887776665444332 4555555444222221
Q ss_pred -------------------------------------------------------------------ccCCCCCcEEEcc
Q 037558 223 -------------------------------------------------------------------FGNLSNLKSLYLY 235 (518)
Q Consensus 223 -------------------------------------------------------------------l~~l~~L~~L~l~ 235 (518)
+..+++|+.|+++
T Consensus 214 n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~ 293 (606)
T 3vq2_A 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293 (606)
T ss_dssp CCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEE
T ss_pred CccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEec
Confidence 3344566666666
Q ss_pred cCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCccccc-
Q 037558 236 GNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGV- 314 (518)
Q Consensus 236 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~- 314 (518)
+|.+.. ++ .+..+++|++|++++|.+ +.+|. + .+++|++|++++|+..+.. .+..+++|++|++++|.+.+.
T Consensus 294 ~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~ 366 (606)
T 3vq2_A 294 GVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSG 366 (606)
T ss_dssp SCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEE
T ss_pred Cccchh-hh-hccccccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCc
Confidence 666654 34 788899999999999999 57774 5 8999999999999665444 567899999999999999866
Q ss_pred -CCccCcCCCCCCeeecccccccccCCccccc-ccCcEEEccCccCcccCc-hhhcCCCCccEEecCCCcCccccChhhh
Q 037558 315 -LPPSISNLTNLKELALLYNHLSGSIPPSLGN-LILRELLLSGNHFAGYLP-YNICQGGALEIFTVSENHFQGTIPTSVR 391 (518)
Q Consensus 315 -~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 391 (518)
.+..+..+++|++|++++|.+.+ +|..+.. ++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|..+.
T Consensus 367 ~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 445 (606)
T 3vq2_A 367 CCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445 (606)
T ss_dssp ECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred chhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc
Confidence 47788999999999999999885 4554544 899999999999998887 6888999999999999999998999999
Q ss_pred cCCCCcEEEcccCcccc-ccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCE
Q 037558 392 NCTSLIRVHLNGNNLTG-NISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQA 470 (518)
Q Consensus 392 ~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~ 470 (518)
.+++|++|++++|++++ .++..+..+++|++|++++|++.+..|..+..+++|++|++++|++++..|..+..+++|++
T Consensus 446 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 525 (606)
T 3vq2_A 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525 (606)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCE
T ss_pred CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCE
Confidence 99999999999999998 47889999999999999999999988999999999999999999999888999999999999
Q ss_pred EeCcCCcCcccCCccccCCC-CCCEEECcCCccccccC
Q 037558 471 LDLSLNHIVGEIPKELGKLN-SLTKLILRGNQRAVTLS 507 (518)
Q Consensus 471 L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~~ip 507 (518)
|++++|++. .+|..+..++ +|++|++++|++.+..+
T Consensus 526 L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 526 LDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp EECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred EECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 999999998 6777799987 69999999999998666
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-47 Score=420.40 Aligned_cols=441 Identities=21% Similarity=0.175 Sum_probs=305.3
Q ss_pred CccCceeeCCCCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccC-CccccCCCCCCEEECCCCCCCcCCCc
Q 037558 71 CAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTI-PPEVGLLSHLKFLFIDTNKLDGSIPP 149 (518)
Q Consensus 71 c~w~g~~c~~~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~p~ 149 (518)
|+|..|.+ ...+++.++|+++.+.+..+. .|.++++|++|+|++|...+.+ |..|.++++|++|+|++|.+.+..|.
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC-CCCCcCEEECCCCcCCccChh-HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 46777776 567899999999999877666 8999999999999999766666 77899999999999999999988899
Q ss_pred cCCCCCCCcEEEccCCCCCccCCcC--CcCCCCCCEEEccCccccccCC-ccccCCCCCcEEEcccCcCCCCcchhccCC
Q 037558 150 EVGQLSSMEVFFLCSNYLNGSVPPS--LGNLSHISLLFIYDNLFSGFIP-SDIGNSKSIFNLDLSSNQFSGPIPLFFGNL 226 (518)
Q Consensus 150 ~l~~l~~L~~L~L~~n~~~~~~p~~--l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l 226 (518)
.|+++++|++|++++|.+.+.+|.. +.++++|++|++++|.+.+..+ ..++++++|++|++++|.+++..+..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 9999999999999999998766665 8999999999999999987655 578999999999999999988777777665
Q ss_pred --CCCcEEEcccCcCCccccccccCCCC------CCEeeCcCCCCccCCcccccC-------------------------
Q 037558 227 --SNLKSLYLYGNSLSSPILSSLGKFKS------LIDLQLNENQFTGYIPRSFGN------------------------- 273 (518)
Q Consensus 227 --~~L~~L~l~~n~~~~~~~~~l~~l~~------L~~L~l~~n~~~~~~~~~l~~------------------------- 273 (518)
++|+.|++++|.+.+..+..++.+.+ |+.|++++|.+.+..+..+..
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 66777777777766655555544443 666666666544333322211
Q ss_pred -------------CCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCC
Q 037558 274 -------------LTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIP 340 (518)
Q Consensus 274 -------------l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 340 (518)
.++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..|
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence 1456666666666655555555666666666666666665555556666666666666666655444
Q ss_pred ccccc-ccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccc------------------cC--------------
Q 037558 341 PSLGN-LILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGT------------------IP-------------- 387 (518)
Q Consensus 341 ~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~------------------~~-------------- 387 (518)
..+.. ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+. +|
T Consensus 332 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N 411 (844)
T 3j0a_A 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSEN 411 (844)
T ss_dssp CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSC
T ss_pred HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccC
Confidence 44443 5566666666666555555555555666666555554421 11
Q ss_pred --------hhhhcCCCCcEEEcccCccccccCh-hhhCCCCCCEEecccCccc-----cccCccccCCCCCCEEEccCCc
Q 037558 388 --------TSVRNCTSLIRVHLNGNNLTGNISE-ALAIYPNLTFIDLSRNNFY-----GEISSNWGKCPKLDTLNVSMNN 453 (518)
Q Consensus 388 --------~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~-----~~~~~~~~~~~~L~~L~ls~n~ 453 (518)
..+..+++|++|++++|++++..+. .+..+++|+.|++++|.+. +..+..+.++++|++|++++|+
T Consensus 412 ~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 491 (844)
T 3j0a_A 412 RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY 491 (844)
T ss_dssp CCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHH
T ss_pred ccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCc
Confidence 1123455666666666666543222 2334556666666666654 2233456667777777777777
Q ss_pred cccCccccccCCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCccccccCccCccCCC
Q 037558 454 ITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINKVCSS 515 (518)
Q Consensus 454 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip~~l~~l~~ 515 (518)
+++..|..|..+++|+.|+|++|++++..+..+. ++|+.|++++|++.+.+|..+.+++.
T Consensus 492 l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~~L~~ 551 (844)
T 3j0a_A 492 LNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFVSLSV 551 (844)
T ss_dssp HTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCSSCCE
T ss_pred ccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhCCcCE
Confidence 7776777777778888888888877765555544 67788888888887777776655443
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.5e-47 Score=403.28 Aligned_cols=397 Identities=21% Similarity=0.282 Sum_probs=346.4
Q ss_pred CCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCC------c---------------------------CCCccCC-
Q 037558 107 PRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLD------G---------------------------SIPPEVG- 152 (518)
Q Consensus 107 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~------~---------------------------~~p~~l~- 152 (518)
.+++.|+|+++.+.|.+|++++.+++|++|+|++|.+. + .+|..++
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 58999999999999999999999999999999999751 1 1111111
Q ss_pred ------------------CCCCCcEEEcc--CCCCCccCCcCCcCCCCCCEEEccCcccccc-----------------C
Q 037558 153 ------------------QLSSMEVFFLC--SNYLNGSVPPSLGNLSHISLLFIYDNLFSGF-----------------I 195 (518)
Q Consensus 153 ------------------~l~~L~~L~L~--~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~-----------------~ 195 (518)
....++.+.+. .|.+++ +|..++++++|++|++++|.+++. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 11122222232 567887 899999999999999999999986 8
Q ss_pred Ccccc--CCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCc-CCc-cccccccCC------CCCCEeeCcCCCCcc
Q 037558 196 PSDIG--NSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNS-LSS-PILSSLGKF------KSLIDLQLNENQFTG 265 (518)
Q Consensus 196 ~~~~~--~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~l~~l------~~L~~L~l~~n~~~~ 265 (518)
|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|. +++ .+|..++.+ ++|++|++++|+++
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~- 318 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK- 318 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-
Confidence 99999 99999999999999999999999999999999999998 998 888888776 99999999999999
Q ss_pred CCcc--cccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCC-CCeeecccccccccCCcc
Q 037558 266 YIPR--SFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTN-LKELALLYNHLSGSIPPS 342 (518)
Q Consensus 266 ~~~~--~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~p~~ 342 (518)
.+|. .+..+++|++|++++|.++|.+| .+..+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~ 395 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNI 395 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSC
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchh
Confidence 7888 89999999999999999998999 8899999999999999999 88888999999 999999999999 78877
Q ss_pred ccc---ccCcEEEccCccCcccCchhhc-------CCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccCh
Q 037558 343 LGN---LILRELLLSGNHFAGYLPYNIC-------QGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISE 412 (518)
Q Consensus 343 ~~~---~~L~~L~l~~n~~~~~~~~~~~-------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 412 (518)
+.. .+|+.|++++|.+.+..|..+. .+.+|+.|++++|.+.+..+..+..+++|++|++++|+++...+.
T Consensus 396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~ 475 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475 (636)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSS
T ss_pred hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHH
Confidence 665 3799999999999999988888 778999999999999944444456699999999999999944444
Q ss_pred hhhCC-------CCCCEEecccCccccccCcccc--CCCCCCEEEccCCccccCccccccCCCCCCEEeC------cCCc
Q 037558 413 ALAIY-------PNLTFIDLSRNNFYGEISSNWG--KCPKLDTLNVSMNNITGGIPREIGNSSQLQALDL------SLNH 477 (518)
Q Consensus 413 ~l~~l-------~~L~~L~L~~n~l~~~~~~~~~--~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L------~~n~ 477 (518)
.+... ++|++|++++|+++ .+|..+. .+++|++|++++|++++ +|..+..+++|++|++ ++|+
T Consensus 476 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~ 553 (636)
T 4eco_A 476 SLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNR 553 (636)
T ss_dssp SSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCB
T ss_pred HhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCc
Confidence 44433 39999999999999 6787776 89999999999999996 8999999999999999 5688
Q ss_pred CcccCCccccCCCCCCEEECcCCccccccCccCc
Q 037558 478 IVGEIPKELGKLNSLTKLILRGNQRAVTLSFINK 511 (518)
Q Consensus 478 l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip~~l~ 511 (518)
+.+.+|..+..+++|++|++++|++ +.||..+.
T Consensus 554 l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~ 586 (636)
T 4eco_A 554 TLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT 586 (636)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred ccccChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence 8999999999999999999999999 89998765
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.5e-46 Score=390.45 Aligned_cols=395 Identities=21% Similarity=0.220 Sum_probs=324.8
Q ss_pred CCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEE
Q 037558 81 AGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVF 160 (518)
Q Consensus 81 ~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L 160 (518)
..+++.++++++.+.+..+. .|.++++|++|++++|.+.+..+..|+.+++|++|++++|.+++..+..++++++|++|
T Consensus 51 l~~L~~L~Ls~n~i~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 129 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129 (570)
T ss_dssp CSSCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEE
T ss_pred CCCceEEECCCCcCCccCcc-cccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEE
Confidence 35789999999998876555 79999999999999999988888899999999999999999986555579999999999
Q ss_pred EccCCCCCc-cCCcCCcCCCCCCEEEccCccccccCCccccCCCCC----cEEEcccCcCCCCcchhc------------
Q 037558 161 FLCSNYLNG-SVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSI----FNLDLSSNQFSGPIPLFF------------ 223 (518)
Q Consensus 161 ~L~~n~~~~-~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L----~~L~l~~n~~~~~~~~~l------------ 223 (518)
++++|.+.+ .+|..+.++++|++|++++|.+.+..+..++.+++| +++++++|.+.+..+..+
T Consensus 130 ~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~ 209 (570)
T 2z63_A 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209 (570)
T ss_dssp ECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEES
T ss_pred ecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEeccc
Confidence 999999986 478999999999999999999988877777777777 778888877665444333
Q ss_pred ---------------------------------------------------------------------cCCCCCcEEEc
Q 037558 224 ---------------------------------------------------------------------GNLSNLKSLYL 234 (518)
Q Consensus 224 ---------------------------------------------------------------------~~l~~L~~L~l 234 (518)
..+++|++|++
T Consensus 210 n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l 289 (570)
T 2z63_A 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289 (570)
T ss_dssp CCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEE
T ss_pred ccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEe
Confidence 33445555555
Q ss_pred ccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCccccc
Q 037558 235 YGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGV 314 (518)
Q Consensus 235 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~ 314 (518)
++|.+.+ +|..+..+ +|++|++++|.+. .+|. ..+++|++|++++|.+.+..+. ..+++|++|++++|.+.+.
T Consensus 290 ~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~ 362 (570)
T 2z63_A 290 VSVTIER-VKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFK 362 (570)
T ss_dssp ESCEECS-CCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEE
T ss_pred cCccchh-hhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCcc
Confidence 5555543 44445555 5556666555555 3333 3556666777776666544443 6689999999999999865
Q ss_pred C--CccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCc-hhhcCCCCccEEecCCCcCccccChhhh
Q 037558 315 L--PPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLP-YNICQGGALEIFTVSENHFQGTIPTSVR 391 (518)
Q Consensus 315 ~--~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 391 (518)
. +..+..+++|++|++++|.+.+..+.....++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|..+.
T Consensus 363 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 442 (570)
T 2z63_A 363 GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442 (570)
T ss_dssp EEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred ccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhh
Confidence 4 667889999999999999998655552233899999999999988766 5688899999999999999988999999
Q ss_pred cCCCCcEEEcccCccc-cccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCE
Q 037558 392 NCTSLIRVHLNGNNLT-GNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQA 470 (518)
Q Consensus 392 ~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~ 470 (518)
.+++|++|++++|+++ +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|++
T Consensus 443 ~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 522 (570)
T 2z63_A 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522 (570)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcE
Confidence 9999999999999998 578899999999999999999999888999999999999999999999888888999999999
Q ss_pred EeCcCCcCcccCC
Q 037558 471 LDLSLNHIVGEIP 483 (518)
Q Consensus 471 L~L~~n~l~~~~~ 483 (518)
|++++|++.+..|
T Consensus 523 L~l~~N~~~~~~~ 535 (570)
T 2z63_A 523 IWLHTNPWDCSCP 535 (570)
T ss_dssp EECCSSCBCCCTT
T ss_pred EEecCCcccCCCc
Confidence 9999999997765
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.5e-46 Score=391.76 Aligned_cols=425 Identities=19% Similarity=0.200 Sum_probs=308.7
Q ss_pred CCccCceeeCC------------CCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEE
Q 037558 70 PCAWYGISCND------------AGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLF 137 (518)
Q Consensus 70 ~c~w~g~~c~~------------~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 137 (518)
.|.|.|+ |+. ..+++.++++++.+.+..+. .+.++++|++|++++|.+.+..++.|+.+++|++|+
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHG-DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSS-TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChh-hhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 3777776 642 24789999999999877666 899999999999999999988888999999999999
Q ss_pred CCCCCCCcCCCccCCCCCCCcEEEccCCCCCc-cCCcCCcCCCCCCEEEccCccccccC-CccccCCCCCcEEEcccCcC
Q 037558 138 IDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNG-SVPPSLGNLSHISLLFIYDNLFSGFI-PSDIGNSKSIFNLDLSSNQF 215 (518)
Q Consensus 138 l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~~ 215 (518)
+++|.+++..|..++++++|++|++++|.+.+ ..|..+.++++|++|++++|.+.+.+ +..+.++++|++|++++|.+
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 99999997767779999999999999999986 45778999999999999999854444 46899999999999999999
Q ss_pred CCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCC--cc-cccCCCCCcEEEccCCcCcccCc
Q 037558 216 SGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYI--PR-SFGNLTSLSTLRLSKNELFGSIP 292 (518)
Q Consensus 216 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~--~~-~l~~l~~L~~L~l~~n~l~~~~p 292 (518)
++..|..++.+++|++|++++|.+.......+..+++|++|++++|++.+.. +. ....+++|+.|++++|.+++..+
T Consensus 161 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 240 (549)
T 2z81_A 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240 (549)
T ss_dssp CEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHH
T ss_pred cccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHH
Confidence 9888999999999999999888876533333456788888888888877631 11 11234445555555544432111
Q ss_pred c----ccCC-----------------------------------------------------------CCCccEEEccCC
Q 037558 293 D----EIGK-----------------------------------------------------------MRSLSVLDLNEN 309 (518)
Q Consensus 293 ~----~~~~-----------------------------------------------------------l~~L~~L~l~~n 309 (518)
. .+.. .++|+.|++++|
T Consensus 241 ~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n 320 (549)
T 2z81_A 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320 (549)
T ss_dssp HHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS
T ss_pred HHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC
Confidence 1 1111 234555555555
Q ss_pred cccccCCccC-cCCCCCCeeecccccccccCCc---cccc-ccCcEEEccCccCcccCc--hhhcCCCCccEEecCCCcC
Q 037558 310 QFKGVLPPSI-SNLTNLKELALLYNHLSGSIPP---SLGN-LILRELLLSGNHFAGYLP--YNICQGGALEIFTVSENHF 382 (518)
Q Consensus 310 ~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~~p~---~~~~-~~L~~L~l~~n~~~~~~~--~~~~~~~~L~~L~l~~n~l 382 (518)
.+. .+|..+ ..+++|++|++++|.+++.+|. .+.. +.|++|++++|.+.+..+ ..+..+++|+.|++++|++
T Consensus 321 ~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l 399 (549)
T 2z81_A 321 KVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF 399 (549)
T ss_dssp CCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred ccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCC
Confidence 554 445443 3567777777777777655432 1222 667777777777665432 3466667777777777777
Q ss_pred ccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccc
Q 037558 383 QGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREI 462 (518)
Q Consensus 383 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~ 462 (518)
+ .+|..+..+++|++|++++|++++. +..+ .++|++|++++|++++.. ..+++|++|++++|+++ .+|. .
T Consensus 400 ~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~ 469 (549)
T 2z81_A 400 H-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-A 469 (549)
T ss_dssp C-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-G
T ss_pred c-cCChhhcccccccEEECCCCCcccc-cchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-c
Confidence 6 5666666677777777777776632 2222 256777777777776532 46778888888888887 5665 4
Q ss_pred cCCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCccccccC
Q 037558 463 GNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLS 507 (518)
Q Consensus 463 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip 507 (518)
..+++|++|++++|++.+..|..+..+++|++|++++|++.+.+|
T Consensus 470 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 567888888888888888777778888888888888888887776
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6e-45 Score=398.77 Aligned_cols=421 Identities=20% Similarity=0.202 Sum_probs=304.2
Q ss_pred CCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCcc--CCCCCCCc
Q 037558 81 AGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPE--VGQLSSME 158 (518)
Q Consensus 81 ~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~--l~~l~~L~ 158 (518)
..+++.++++++...+.+++..|.++++|++|+|++|.+.+..|+.|+.+++|++|++++|.+++.+|.. ++++++|+
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 3578999999998877886558999999999999999999888999999999999999999998766665 89999999
Q ss_pred EEEccCCCCCccCC-cCCcCCCCCCEEEccCccccccCCccccCC--CCCcEEEcccCcCCCCcchhccCC---------
Q 037558 159 VFFLCSNYLNGSVP-PSLGNLSHISLLFIYDNLFSGFIPSDIGNS--KSIFNLDLSSNQFSGPIPLFFGNL--------- 226 (518)
Q Consensus 159 ~L~L~~n~~~~~~p-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~~l~~l--------- 226 (518)
+|++++|.+.+..+ ..++++++|++|++++|.+.+..+..+..+ ++|++|++++|.+.+..+..++.+
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L 206 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCB
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCce
Confidence 99999999987654 578999999999999999887777666554 555555555555544444333332
Q ss_pred -----------------------------------------------------------CCCcEEEcccCcCCccccccc
Q 037558 227 -----------------------------------------------------------SNLKSLYLYGNSLSSPILSSL 247 (518)
Q Consensus 227 -----------------------------------------------------------~~L~~L~l~~n~~~~~~~~~l 247 (518)
++|+.|++++|.+.+..+..+
T Consensus 207 ~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~ 286 (844)
T 3j0a_A 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286 (844)
T ss_dssp SEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS
T ss_pred eEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh
Confidence 345555555555555445555
Q ss_pred cCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCe
Q 037558 248 GKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKE 327 (518)
Q Consensus 248 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 327 (518)
..+++|+.|++++|++.+..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+..+..+++|+.
T Consensus 287 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 366 (844)
T 3j0a_A 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366 (844)
T ss_dssp SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCE
T ss_pred hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCE
Confidence 55555666666666555555555555566666666666555555555555666666666666655444445555666666
Q ss_pred eecccccccccCCccc-----------------ccccCcEEEccCccCccc-CchhhcCCCCccEEecCCCcCccccCh-
Q 037558 328 LALLYNHLSGSIPPSL-----------------GNLILRELLLSGNHFAGY-LPYNICQGGALEIFTVSENHFQGTIPT- 388 (518)
Q Consensus 328 L~l~~n~l~~~~p~~~-----------------~~~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~- 388 (518)
|++++|.+++. +... ....++.+++++|.+.+. .+..+..+++|+.|++++|.+.+..+.
T Consensus 367 L~Ls~N~l~~i-~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 445 (844)
T 3j0a_A 367 LDLRDNALTTI-HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQ 445 (844)
T ss_dssp EEEETCCSCCC-SSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSS
T ss_pred EECCCCCCCcc-cCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccc
Confidence 66666555421 1100 001233333333333332 122345788999999999999865433
Q ss_pred hhhcCCCCcEEEcccCccc-----cccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCcccccc
Q 037558 389 SVRNCTSLIRVHLNGNNLT-----GNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIG 463 (518)
Q Consensus 389 ~~~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~ 463 (518)
.+..+++|+.|++++|.++ +..+..+..+++|+.|+|++|++++..+..+..+++|++|++++|++++..+..+.
T Consensus 446 ~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~ 525 (844)
T 3j0a_A 446 TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP 525 (844)
T ss_dssp SSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC
T ss_pred ccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh
Confidence 3456899999999999997 34456788899999999999999988888899999999999999999976666555
Q ss_pred CCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCccccccC
Q 037558 464 NSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLS 507 (518)
Q Consensus 464 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip 507 (518)
++|+.|++++|++.+..|..+ ++|+.+++++|++.+..+
T Consensus 526 --~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 526 --ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE 564 (844)
T ss_dssp --SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred --ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence 899999999999999988765 578999999999987544
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.4e-45 Score=393.01 Aligned_cols=394 Identities=22% Similarity=0.290 Sum_probs=341.0
Q ss_pred CCCcEEeCCCCCCcccCCccccCCCCCCEEEC-CCCCCCcCCCccC----------------------------------
Q 037558 107 PRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFI-DTNKLDGSIPPEV---------------------------------- 151 (518)
Q Consensus 107 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l-~~n~~~~~~p~~l---------------------------------- 151 (518)
.+++.|+|+++.+.|.+|+.++.+++|++|+| ++|.+.|..|...
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 58999999999999999999999999999999 8887766533220
Q ss_pred -----------------CCCCCCcEEEccC--CCCCccCCcCCcCCCCCCEEEccCccccc-----------------cC
Q 037558 152 -----------------GQLSSMEVFFLCS--NYLNGSVPPSLGNLSHISLLFIYDNLFSG-----------------FI 195 (518)
Q Consensus 152 -----------------~~l~~L~~L~L~~--n~~~~~~p~~l~~l~~L~~L~l~~n~~~~-----------------~~ 195 (518)
.....++.+.+.. |.+.+ +|..++++++|++|++++|.+++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 1122333344433 67776 89999999999999999999998 38
Q ss_pred Ccccc--CCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCc-CCc-cccccccCCC-------CCCEeeCcCCCCc
Q 037558 196 PSDIG--NSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNS-LSS-PILSSLGKFK-------SLIDLQLNENQFT 264 (518)
Q Consensus 196 ~~~~~--~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~l~~l~-------~L~~L~l~~n~~~ 264 (518)
|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|. +++ .+|..++.++ +|+.|++++|.+.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 99988 99999999999999999999999999999999999998 888 7887666554 9999999999999
Q ss_pred cCCcc--cccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCC-CCeeecccccccccCCc
Q 037558 265 GYIPR--SFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTN-LKELALLYNHLSGSIPP 341 (518)
Q Consensus 265 ~~~~~--~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~l~~~~p~ 341 (518)
.+|. .+..+++|+.|++++|.++ .+| .+..+++|++|++++|.+. .+|..+..+++ |+.|++++|.++ .+|.
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~ 636 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN 636 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence 7888 8999999999999999998 888 8999999999999999999 88888999999 999999999998 7887
Q ss_pred cccc---ccCcEEEccCccCcccCchhh---c--CCCCccEEecCCCcCccccChhh-hcCCCCcEEEcccCccccccCh
Q 037558 342 SLGN---LILRELLLSGNHFAGYLPYNI---C--QGGALEIFTVSENHFQGTIPTSV-RNCTSLIRVHLNGNNLTGNISE 412 (518)
Q Consensus 342 ~~~~---~~L~~L~l~~n~~~~~~~~~~---~--~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~ 412 (518)
.+.. ..|+.|++++|.+.+.+|... . ...+|+.|++++|.+. .+|..+ ..+++|+.|+|++|+++ .+|.
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~ 714 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPE 714 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCT
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccCh
Confidence 7655 349999999999998766432 2 3458999999999999 566655 48999999999999999 4454
Q ss_pred hhhC--------CCCCCEEecccCccccccCcccc--CCCCCCEEEccCCccccCccccccCCCCCCEEeCcC------C
Q 037558 413 ALAI--------YPNLTFIDLSRNNFYGEISSNWG--KCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSL------N 476 (518)
Q Consensus 413 ~l~~--------l~~L~~L~L~~n~l~~~~~~~~~--~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~------n 476 (518)
.+.. +++|+.|+|++|++. .+|..+. .+++|+.|++++|++.+ +|..+..+++|+.|+|++ |
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N 792 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGN 792 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCC
T ss_pred HHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccc
Confidence 4332 239999999999999 7788776 89999999999999996 898999999999999976 8
Q ss_pred cCcccCCccccCCCCCCEEECcCCccccccCccCc
Q 037558 477 HIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINK 511 (518)
Q Consensus 477 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip~~l~ 511 (518)
++.+.+|..+.++++|+.|++++|++ +.||..+.
T Consensus 793 ~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~ 826 (876)
T 4ecn_A 793 RILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT 826 (876)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred cccccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence 88999999999999999999999999 99998765
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.9e-44 Score=374.88 Aligned_cols=411 Identities=16% Similarity=0.180 Sum_probs=241.5
Q ss_pred CCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEE
Q 037558 82 GRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF 161 (518)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 161 (518)
.+++.++++++.+.+..+. .+.++++|++|++++|.+.+..|..|+.+++|++|++++|.++ .+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTS-DILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCCCHH-HHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred ccccEEECCCCcccccChh-hccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence 4566666666666554433 5666666666666666666655666666666666666666666 45544 566666666
Q ss_pred ccCCCCCc-cCCcCCcCCCCCCEEEccCccccccCCccccCCCCC--cEEEcccCcC--CCCcchhccCCC-CCcEEEcc
Q 037558 162 LCSNYLNG-SVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSI--FNLDLSSNQF--SGPIPLFFGNLS-NLKSLYLY 235 (518)
Q Consensus 162 L~~n~~~~-~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L--~~L~l~~n~~--~~~~~~~l~~l~-~L~~L~l~ 235 (518)
+++|.+.+ .+|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|..+..+. +...++++
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence 66666654 355666666666666666666654 234455555 6666666666 444444444322 11122222
Q ss_pred cCcCCcccc-ccccCCCCCCEeeCcCCC-------CccCCcccccCCC---------------------------CCcEE
Q 037558 236 GNSLSSPIL-SSLGKFKSLIDLQLNENQ-------FTGYIPRSFGNLT---------------------------SLSTL 280 (518)
Q Consensus 236 ~n~~~~~~~-~~l~~l~~L~~L~l~~n~-------~~~~~~~~l~~l~---------------------------~L~~L 280 (518)
+|.+.+..+ ..+..+++|+.+++++|. +.+.+| .+..++ +|++|
T Consensus 174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L 252 (520)
T 2z7x_B 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252 (520)
T ss_dssp SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred cCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence 222222111 122234444444444443 222222 233333 45555
Q ss_pred EccCCcCcccCcccc-----CCCCCccEEEccCCcccccCC-ccCcCC---CCCCeeecccccccccCCcccccccCcEE
Q 037558 281 RLSKNELFGSIPDEI-----GKMRSLSVLDLNENQFKGVLP-PSISNL---TNLKELALLYNHLSGSIPPSLGNLILREL 351 (518)
Q Consensus 281 ~l~~n~l~~~~p~~~-----~~l~~L~~L~l~~n~l~~~~~-~~l~~l---~~L~~L~l~~n~l~~~~p~~~~~~~L~~L 351 (518)
++++|++++.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.+. +.....+.|++|
T Consensus 253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~l~~L~~L 329 (520)
T 2z7x_B 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHM-LCPSKISPFLHL 329 (520)
T ss_dssp EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCC-CCCSSCCCCCEE
T ss_pred EeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccc-cchhhCCcccEE
Confidence 555555555555554 5555555555555555 233 222222 4466666666655422 111122667777
Q ss_pred EccCccCcccCchhhcCCCCccEEecCCCcCcc--ccChhhhcCCCCcEEEcccCccccccCh-hhhCCCCCCEEecccC
Q 037558 352 LLSGNHFAGYLPYNICQGGALEIFTVSENHFQG--TIPTSVRNCTSLIRVHLNGNNLTGNISE-ALAIYPNLTFIDLSRN 428 (518)
Q Consensus 352 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n 428 (518)
++++|.+.+..|..+..+++|+.|++++|.+.+ .+|..+..+++|++|++++|++++.+|. .+..+++|++|++++|
T Consensus 330 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N 409 (520)
T 2z7x_B 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409 (520)
T ss_dssp ECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSS
T ss_pred EeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCC
Confidence 777777777777777777777777777777765 4456667777777777777777763443 4666777777777777
Q ss_pred ccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCcc-ccCCCCCCEEECcCCccccccC
Q 037558 429 NFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKE-LGKLNSLTKLILRGNQRAVTLS 507 (518)
Q Consensus 429 ~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~ip 507 (518)
++++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|++. .+|.. +..+++|++|++++|++.+..+
T Consensus 410 ~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 410 ILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 77666555443 57777777777777 66666667777777777777777 34443 6777777777777777766543
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2e-43 Score=369.76 Aligned_cols=425 Identities=19% Similarity=0.179 Sum_probs=297.5
Q ss_pred eeeCCCCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCC
Q 037558 76 ISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLS 155 (518)
Q Consensus 76 ~~c~~~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~ 155 (518)
..|...+ + .+.+++++.. +|. .+ .++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..|++++
T Consensus 2 ~~C~~~~-~--c~~~~~~l~~-ip~-~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 74 (549)
T 2z81_A 2 LSCDASG-V--CDGRSRSFTS-IPS-GL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG 74 (549)
T ss_dssp CEECTTS-E--EECTTSCCSS-CCS-CC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred ccCCCCc-e--EECCCCcccc-ccc-cC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccc
Confidence 3575433 3 6888877764 444 33 37999999999999988888999999999999999999988888999999
Q ss_pred CCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccc-cCCccccCCCCCcEEEcccCcCCCCcc-hhccCCCCCcEEE
Q 037558 156 SMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSG-FIPSDIGNSKSIFNLDLSSNQFSGPIP-LFFGNLSNLKSLY 233 (518)
Q Consensus 156 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~ 233 (518)
+|++|++++|.+.+..|..++++++|++|++++|.+.+ ..|..++++++|++|++++|.+.+.++ ..+..+++|++|+
T Consensus 75 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~ 154 (549)
T 2z81_A 75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154 (549)
T ss_dssp TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred cCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeee
Confidence 99999999999997777779999999999999999987 456789999999999999998544554 6899999999999
Q ss_pred cccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccC--cc-ccCCCCCccEEEccCCc
Q 037558 234 LYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSI--PD-EIGKMRSLSVLDLNENQ 310 (518)
Q Consensus 234 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~--p~-~~~~l~~L~~L~l~~n~ 310 (518)
+++|.+++..|..++.+++|++|++++|.+.......+..+++|++|++++|++++.. |. ....+++|+.|++++|.
T Consensus 155 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 234 (549)
T 2z81_A 155 IKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234 (549)
T ss_dssp EEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred ccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc
Confidence 9999999999999999999999999999887433333457899999999999998642 22 22457889999999988
Q ss_pred ccccCCc----cCcCCCCCCeeecccccccc-------------------------------------------------
Q 037558 311 FKGVLPP----SISNLTNLKELALLYNHLSG------------------------------------------------- 337 (518)
Q Consensus 311 l~~~~~~----~l~~l~~L~~L~l~~n~l~~------------------------------------------------- 337 (518)
+.+..+. .+..+++|+.+++++|.+.+
T Consensus 235 l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~ 314 (549)
T 2z81_A 235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR 314 (549)
T ss_dssp EEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCE
T ss_pred cchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceE
Confidence 7643221 22334444444444444332
Q ss_pred ---------cCCcccc--cccCcEEEccCccCcccCch---hhcCCCCccEEecCCCcCccccC--hhhhcCCCCcEEEc
Q 037558 338 ---------SIPPSLG--NLILRELLLSGNHFAGYLPY---NICQGGALEIFTVSENHFQGTIP--TSVRNCTSLIRVHL 401 (518)
Q Consensus 338 ---------~~p~~~~--~~~L~~L~l~~n~~~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L 401 (518)
.+|..+. .++|++|++++|.+.+.+|. .+..+++|+.|++++|.+++..+ ..+..+++|++|++
T Consensus 315 L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~L 394 (549)
T 2z81_A 315 ITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDI 394 (549)
T ss_dssp EEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEEC
T ss_pred EEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEEC
Confidence 2222221 14444444444444443321 13334444444444444442211 22344444444444
Q ss_pred ccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCccc
Q 037558 402 NGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGE 481 (518)
Q Consensus 402 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 481 (518)
++|+++ .+|..+..+++|++|++++|++.+ ++..+ .++|++|++++|++++. +..+++|++|++++|++. .
T Consensus 395 s~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ 465 (549)
T 2z81_A 395 SRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-T 465 (549)
T ss_dssp TTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-S
T ss_pred CCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhh----cccCChhcEEECCCCccC-c
Confidence 444444 233344444445555555544442 12111 13455555555555432 246889999999999998 6
Q ss_pred CCccccCCCCCCEEECcCCccccccCccCccCCCCC
Q 037558 482 IPKELGKLNSLTKLILRGNQRAVTLSFINKVCSSLE 517 (518)
Q Consensus 482 ~~~~l~~l~~L~~L~l~~n~~~~~ip~~l~~l~~L~ 517 (518)
+|. ...+++|++|++++|++.+.+|..+.++++|+
T Consensus 466 ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 500 (549)
T 2z81_A 466 LPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500 (549)
T ss_dssp CCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCC
T ss_pred CCC-cccCccCCEEecCCCccCCcCHHHHhcCcccC
Confidence 675 56799999999999999998888888888876
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.5e-43 Score=365.33 Aligned_cols=414 Identities=20% Similarity=0.207 Sum_probs=333.3
Q ss_pred EEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccC
Q 037558 85 INISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCS 164 (518)
Q Consensus 85 ~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~ 164 (518)
+.++++++++.. +|. .+. ++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|+++++|++|++++
T Consensus 3 ~~l~ls~n~l~~-ip~-~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPK-DLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCSS-CCC-SCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCccc-ccc-ccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 468999999984 555 444 8999999999999888888999999999999999999988899999999999999999
Q ss_pred CCCCccCCcCCcCCCCCCEEEccCccccc-cCCccccCCCCCcEEEcccCcCCCCcchhccCCCCC--cEEEcccCcC--
Q 037558 165 NYLNGSVPPSLGNLSHISLLFIYDNLFSG-FIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNL--KSLYLYGNSL-- 239 (518)
Q Consensus 165 n~~~~~~p~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~l~~n~~-- 239 (518)
|.+. .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+++ ..+..+++| ++|++++|.+
T Consensus 79 N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 79 NKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp SCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred Ccee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc
Confidence 9998 56766 89999999999999987 578899999999999999999986 456677778 9999999999
Q ss_pred CccccccccCCC-CCCEeeCcCCCCccCCc-ccccCCCCCcEEEccCCc-------CcccCccccCCCCCccEE------
Q 037558 240 SSPILSSLGKFK-SLIDLQLNENQFTGYIP-RSFGNLTSLSTLRLSKNE-------LFGSIPDEIGKMRSLSVL------ 304 (518)
Q Consensus 240 ~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~-------l~~~~p~~~~~l~~L~~L------ 304 (518)
.+..|..+..+. ....+++++|.+.+.++ ..+..+++|+.+++++|. +.+.+| .+..+++|+.|
T Consensus 153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~ 231 (520)
T 2z7x_B 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIE 231 (520)
T ss_dssp SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEE
T ss_pred cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccc
Confidence 777787777765 34456788888776554 356789999999999986 444444 45555555554
Q ss_pred ---------------------EccCCcccccCCccC-----cCCCCCCeeecccccccccCCc-cc----ccccCcEEEc
Q 037558 305 ---------------------DLNENQFKGVLPPSI-----SNLTNLKELALLYNHLSGSIPP-SL----GNLILRELLL 353 (518)
Q Consensus 305 ---------------------~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~p~-~~----~~~~L~~L~l 353 (518)
++++|.+.+.+|..+ ..+++|+.+++++|.+ .+|. .+ ...+++.|++
T Consensus 232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l 309 (520)
T 2z7x_B 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTV 309 (520)
T ss_dssp EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEE
T ss_pred cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEc
Confidence 445555544455444 4555555555555554 2331 11 1135777777
Q ss_pred cCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCcccc--ccChhhhCCCCCCEEecccCccc
Q 037558 354 SGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTG--NISEALAIYPNLTFIDLSRNNFY 431 (518)
Q Consensus 354 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~ 431 (518)
++|.+.+... ...+++|+.|++++|.+.+..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|++.
T Consensus 310 ~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~ 387 (520)
T 2z7x_B 310 SGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387 (520)
T ss_dssp ESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCB
T ss_pred CCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCC
Confidence 7777654321 2577899999999999998899999999999999999999997 56678999999999999999999
Q ss_pred cccCc-cccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCccccccCcc-
Q 037558 432 GEISS-NWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFI- 509 (518)
Q Consensus 432 ~~~~~-~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip~~- 509 (518)
+.+|. .+..+++|++|++++|++++.+|..+. ++|++|++++|++. .+|..+..+++|++|++++|++. .+|..
T Consensus 388 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~ 463 (520)
T 2z7x_B 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGI 463 (520)
T ss_dssp CCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTT
T ss_pred cccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHH
Confidence 85554 478899999999999999988777664 79999999999999 88888889999999999999997 68876
Q ss_pred CccCCCCC
Q 037558 510 NKVCSSLE 517 (518)
Q Consensus 510 l~~l~~L~ 517 (518)
+..+++|+
T Consensus 464 ~~~l~~L~ 471 (520)
T 2z7x_B 464 FDRLTSLQ 471 (520)
T ss_dssp TTTCTTCC
T ss_pred hccCCccc
Confidence 77887775
No 21
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.5e-42 Score=351.82 Aligned_cols=363 Identities=20% Similarity=0.142 Sum_probs=235.8
Q ss_pred CCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCC-CccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEE
Q 037558 107 PRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSI-PPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLF 185 (518)
Q Consensus 107 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 185 (518)
++|++|++++|.+.+..|..++++++|++|++++|.+.+.+ +..|.++++|++|++++|.+.+..|..+.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 68999999999998888888999999999999999887555 56689999999999999999888888899999999999
Q ss_pred ccCccccccCCcc--ccCCCCCcEEEcccCcCCCCcchh-ccCCCCCcEEEcccCcCCccccccccCC--CCCCEeeCcC
Q 037558 186 IYDNLFSGFIPSD--IGNSKSIFNLDLSSNQFSGPIPLF-FGNLSNLKSLYLYGNSLSSPILSSLGKF--KSLIDLQLNE 260 (518)
Q Consensus 186 l~~n~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~l~~l--~~L~~L~l~~ 260 (518)
+++|.+.+..+.. +..+++|++|++++|.+++..|.. +..+++|++|++++|.+.+..+..+..+ .+++.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999988755444 888889999999999888776765 7888888888888888888777777665 5777888888
Q ss_pred CCCccCCccc--------ccCCCCCcEEEccCCcCcccCccccCCC---CCccEEEccCCcccccCCccCcCCCCCCeee
Q 037558 261 NQFTGYIPRS--------FGNLTSLSTLRLSKNELFGSIPDEIGKM---RSLSVLDLNENQFKGVLPPSISNLTNLKELA 329 (518)
Q Consensus 261 n~~~~~~~~~--------l~~l~~L~~L~l~~n~l~~~~p~~~~~l---~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 329 (518)
|.+.+..+.. +..+++|++|++++|++++..|..+... ++|+.|++++|...+.... .
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~---------- 258 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-H---------- 258 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-C----------
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-h----------
Confidence 8777544332 2244566677777766665555544332 5666666666655432110 0
Q ss_pred cccccccccCCccc---ccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCcc
Q 037558 330 LLYNHLSGSIPPSL---GNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNL 406 (518)
Q Consensus 330 l~~n~l~~~~p~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 406 (518)
+.+.+..+..+ ..+.++.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|++
T Consensus 259 ---~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 335 (455)
T 3v47_A 259 ---TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL 335 (455)
T ss_dssp ---CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ---hhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc
Confidence 01110111111 113455555555555555555555555555555555555544455555555555555555555
Q ss_pred ccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCC
Q 037558 407 TGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIP 483 (518)
Q Consensus 407 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 483 (518)
++..+..+..+++|++|++++|++.+..|..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..|
T Consensus 336 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 336 GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 55445555555555555555555554445555555555555555555554333344555555555555555554443
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.3e-41 Score=347.66 Aligned_cols=364 Identities=19% Similarity=0.182 Sum_probs=312.8
Q ss_pred CCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccC-CcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEE
Q 037558 131 SHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSV-PPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLD 209 (518)
Q Consensus 131 ~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~-p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 209 (518)
++|++|++++|.+++..|..++++++|++|++++|.+.+.+ +..|.++++|++|++++|.+.+..|..+.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 78999999999999888999999999999999999987555 56789999999999999999998899999999999999
Q ss_pred cccCcCCCCcchh--ccCCCCCcEEEcccCcCCcccccc-ccCCCCCCEeeCcCCCCccCCcccccCC--CCCcEEEccC
Q 037558 210 LSSNQFSGPIPLF--FGNLSNLKSLYLYGNSLSSPILSS-LGKFKSLIDLQLNENQFTGYIPRSFGNL--TSLSTLRLSK 284 (518)
Q Consensus 210 l~~n~~~~~~~~~--l~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~l~~l--~~L~~L~l~~ 284 (518)
+++|.+++..+.. ++.+++|++|++++|.+++..|.. +..+++|++|++++|.+.+..+..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999998755554 889999999999999999877766 8899999999999999998888877765 7899999999
Q ss_pred CcCcccCccc--------cCCCCCccEEEccCCcccccCCccCcCC---CCCCeeecccccccccCCcccccccCcEEEc
Q 037558 285 NELFGSIPDE--------IGKMRSLSVLDLNENQFKGVLPPSISNL---TNLKELALLYNHLSGSIPPSLGNLILRELLL 353 (518)
Q Consensus 285 n~l~~~~p~~--------~~~l~~L~~L~l~~n~l~~~~~~~l~~l---~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l 353 (518)
|.+.+..+.. +..+++|++|++++|.+.+..|..+... ++|+.|++++|...+....
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~------------ 257 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG------------ 257 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT------------
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc------------
Confidence 9988654433 2356899999999999988777665433 7899999998876643221
Q ss_pred cCccCcccCchhhc--CCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccc
Q 037558 354 SGNHFAGYLPYNIC--QGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFY 431 (518)
Q Consensus 354 ~~n~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 431 (518)
.+.+.+..+..+. ..++|+.+++++|.+.+..|..+..+++|++|++++|++++..+..+..+++|++|++++|++.
T Consensus 258 -~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 336 (455)
T 3v47_A 258 -HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336 (455)
T ss_dssp -CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred -hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccC
Confidence 1112222122222 3468999999999999888999999999999999999999988999999999999999999999
Q ss_pred cccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCccccccC
Q 037558 432 GEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLS 507 (518)
Q Consensus 432 ~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip 507 (518)
+..+..+..+++|++|++++|++.+..|..+..+++|++|++++|++.+..+..+..+++|++|++++|++.+.+|
T Consensus 337 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 8888889999999999999999998888999999999999999999998777778999999999999999999988
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.3e-40 Score=354.52 Aligned_cols=421 Identities=23% Similarity=0.195 Sum_probs=319.7
Q ss_pred CCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEE
Q 037558 82 GRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF 161 (518)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 161 (518)
..++.++|++|.+.+..+. .|.++++|++|+|++|.+.+..+.+|.++++|++|+|++|++++..+..|+++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~-~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHH-HHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 3789999999999865554 899999999999999999888888899999999999999999966667799999999999
Q ss_pred ccCCCCCccCCcCCcCCCCCCEEEccCccccc-cCCccccCCCCCcEEEcccCcCCCCcchhccCCCCC----cEEEccc
Q 037558 162 LCSNYLNGSVPPSLGNLSHISLLFIYDNLFSG-FIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNL----KSLYLYG 236 (518)
Q Consensus 162 L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L----~~L~l~~ 236 (518)
+++|.+.+..+..|+++++|++|++++|.+.+ ..|..++.+++|++|++++|.+++..+..+..+.++ ..++++.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 99999997766779999999999999999876 467888999999999999999987766665443332 2444554
Q ss_pred CcCCccccccc------------------------cCC------------------------------------------
Q 037558 237 NSLSSPILSSL------------------------GKF------------------------------------------ 250 (518)
Q Consensus 237 n~~~~~~~~~l------------------------~~l------------------------------------------ 250 (518)
|.+....+..+ ..+
T Consensus 211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 44432211111 111
Q ss_pred ---------------CCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCc-------------------cccC
Q 037558 251 ---------------KSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIP-------------------DEIG 296 (518)
Q Consensus 251 ---------------~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p-------------------~~~~ 296 (518)
.+++.+.+.++.+... ..+.....++.|++.+|.+.+..+ ....
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~ 368 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 368 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCC
T ss_pred hcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccc
Confidence 1122222222211110 112334456666666665442211 1123
Q ss_pred CCCCccEEEccCCcccc--cCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCc-hhhcCCCCcc
Q 037558 297 KMRSLSVLDLNENQFKG--VLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLP-YNICQGGALE 373 (518)
Q Consensus 297 ~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~ 373 (518)
.+++|+.+++++|.+.. ..+..+..+.+|+.+++..+......+.......++.+++..+......+ ..+..+.+++
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~ 448 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccc
Confidence 45677777777776642 34445556677777777777766544444444788888888877665543 4567788999
Q ss_pred EEecCCCcCccccChhhhcCCCCcEEEcccCccc-cccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCC
Q 037558 374 IFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLT-GNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMN 452 (518)
Q Consensus 374 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n 452 (518)
.++++.|.+.+..+..+..++.++.|++++|++. ...|..+..+++|++|+|++|++++..|..|.++++|++|++++|
T Consensus 449 ~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N 528 (635)
T 4g8a_A 449 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528 (635)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC
Confidence 9999999998888888889999999999999754 457788999999999999999999888999999999999999999
Q ss_pred ccccCccccccCCCCCCEEeCcCCcCcccCCccccCC-CCCCEEECcCCccccc
Q 037558 453 NITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKL-NSLTKLILRGNQRAVT 505 (518)
Q Consensus 453 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~l~~n~~~~~ 505 (518)
++++..|..|..+++|++|+|++|++.+..|..+..+ ++|++|++++|++.+.
T Consensus 529 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 529 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 9998888889999999999999999999999999888 6899999999998764
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.7e-41 Score=351.12 Aligned_cols=407 Identities=18% Similarity=0.204 Sum_probs=293.7
Q ss_pred EEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccC
Q 037558 85 INISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCS 164 (518)
Q Consensus 85 ~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~ 164 (518)
+.++++++++.+ +|. .+. +++++|++++|.+.+..+..|..+++|++|++++|.+++..|..|+++++|++|++++
T Consensus 34 ~~l~ls~~~L~~-ip~-~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPK-DLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CEEECTTSCCCS-CCT-TSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEcCCCCCcc-CCC-CCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 789999999886 554 333 8999999999999988888999999999999999999988899999999999999999
Q ss_pred CCCCccCCcCCcCCCCCCEEEccCcccccc-CCccccCCCCCcEEEcccCcCCCCcchhccCCCCC--cEEEcccCcC--
Q 037558 165 NYLNGSVPPSLGNLSHISLLFIYDNLFSGF-IPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNL--KSLYLYGNSL-- 239 (518)
Q Consensus 165 n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~l~~n~~-- 239 (518)
|.+. .+|.. .+++|++|++++|.+.+. .|..++++++|++|++++|.+.+. .+..+++| ++|++++|.+
T Consensus 110 N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp SCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCC
T ss_pred CcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccc
Confidence 9998 67766 899999999999999873 568999999999999999999864 34445555 9999999998
Q ss_pred CccccccccCCC-CCCEeeCcCCCCccCCcc-cccCCCCCcEEEccCC----------------------------cCcc
Q 037558 240 SSPILSSLGKFK-SLIDLQLNENQFTGYIPR-SFGNLTSLSTLRLSKN----------------------------ELFG 289 (518)
Q Consensus 240 ~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n----------------------------~l~~ 289 (518)
++..+..+..+. ....+++++|.+.+.++. .+..+++|+.+++++| .+.+
T Consensus 184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence 776776666543 011233344443332221 1122333333333332 2221
Q ss_pred c----CccccCCCCCccEEEccCCcccccCCccC-----cCC--------------------------CCCCeeeccccc
Q 037558 290 S----IPDEIGKMRSLSVLDLNENQFKGVLPPSI-----SNL--------------------------TNLKELALLYNH 334 (518)
Q Consensus 290 ~----~p~~~~~l~~L~~L~l~~n~l~~~~~~~l-----~~l--------------------------~~L~~L~l~~n~ 334 (518)
. ++..+ ..++|++|++++|.+.|.+|..+ ..+ .+|+.|++++|.
T Consensus 264 ~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~ 342 (562)
T 3a79_B 264 KCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP 342 (562)
T ss_dssp HHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSC
T ss_pred HHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCC
Confidence 0 11111 12356666666666665555443 222 346666666666
Q ss_pred ccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCcc--ccChhhhcCCCCcEEEcccCccccccC-
Q 037558 335 LSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQG--TIPTSVRNCTSLIRVHLNGNNLTGNIS- 411 (518)
Q Consensus 335 l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~- 411 (518)
+... +.....+.+++|++++|.+.+..|..+..+++|+.|++++|.+.+ .+|..+..+++|++|++++|++++.++
T Consensus 343 ~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 421 (562)
T 3a79_B 343 FIHM-VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD 421 (562)
T ss_dssp CCCC-CCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS
T ss_pred cccc-cCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccCh
Confidence 5421 111223678888888888888788888888888888888888875 334567788888888888888887343
Q ss_pred hhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCcc-ccCCC
Q 037558 412 EALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKE-LGKLN 490 (518)
Q Consensus 412 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~ 490 (518)
..+..+++|++|++++|++++..+..+. ++|++|++++|+++ .+|..+..+++|++|++++|++. .+|.. +..++
T Consensus 422 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~ 497 (562)
T 3a79_B 422 RTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLT 497 (562)
T ss_dssp CCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCT
T ss_pred hhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCC
Confidence 4577788888888888888766655443 68888888888887 67776778888888888888888 45554 78888
Q ss_pred CCCEEECcCCccccccC
Q 037558 491 SLTKLILRGNQRAVTLS 507 (518)
Q Consensus 491 ~L~~L~l~~n~~~~~ip 507 (518)
+|+.|++++|++.+..|
T Consensus 498 ~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 498 SLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TCCCEECCSCCBCCCHH
T ss_pred CCCEEEecCCCcCCCcc
Confidence 88888888888877654
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.7e-42 Score=333.01 Aligned_cols=292 Identities=27% Similarity=0.491 Sum_probs=237.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCCCCCcCCCCCCCCCCCCCc--cCceeeCCC---CCEEEEEcCCCCCcc--ccCCcc
Q 037558 30 SEPNEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCA--WYGISCNDA---GRVINISLRNTGLSG--TLHGFS 102 (518)
Q Consensus 30 ~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~c~--w~g~~c~~~---~~v~~l~l~~~~~~~--~~~~~~ 102 (518)
.|.++|++||++||+++.+ +. .+.+|..+ .+||. |.||.|+.. ++|++++++++.+.| .+|. .
T Consensus 2 ~c~~~~~~aL~~~k~~~~~-~~-~l~~W~~~-------~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~-~ 71 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGN-PT-TLSSWLPT-------TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS-S 71 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTC-CG-GGTTCCTT-------SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG-G
T ss_pred CCCHHHHHHHHHHHHhcCC-cc-cccCCCCC-------CCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccCh-h
Confidence 5889999999999999965 43 68899765 68998 999999864 789999999999988 7777 8
Q ss_pred CCCCCCCcEEeCCC-CCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCC
Q 037558 103 FSSFPRLAYLDLTG-SGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHI 181 (518)
Q Consensus 103 l~~l~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L 181 (518)
+.++++|++|++++ |.+.+.+|..++.+++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|..+.++++|
T Consensus 72 l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 151 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151 (313)
T ss_dssp GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCC
Confidence 88899999999984 88888888888888999999999888888888888888888888888888888888888888888
Q ss_pred CEEEccCccccccCCccccCCC-CCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcC
Q 037558 182 SLLFIYDNLFSGFIPSDIGNSK-SIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNE 260 (518)
Q Consensus 182 ~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 260 (518)
++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..++ |++|++++|.+++..+..+..+++|+.|++++
T Consensus 152 ~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 230 (313)
T 1ogq_A 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230 (313)
T ss_dssp CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCS
T ss_pred CeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCC
Confidence 8888888888888888888887 888888888888877777777776 88888888887777777777777788888877
Q ss_pred CCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeeccccc
Q 037558 261 NQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNH 334 (518)
Q Consensus 261 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 334 (518)
|.+++..|. +..+++|++|++++|++++.+|..+..+++|++|++++|.+++.+|.. ..+++|+.+++++|.
T Consensus 231 N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 231 NSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp SEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred CceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 777755554 666777777777777777777777777777777777777777776654 666777777777775
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.4e-40 Score=334.04 Aligned_cols=382 Identities=21% Similarity=0.249 Sum_probs=277.9
Q ss_pred CCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCC-------------CEEECCCCCCCcCC
Q 037558 81 AGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHL-------------KFLFIDTNKLDGSI 147 (518)
Q Consensus 81 ~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L-------------~~L~l~~n~~~~~~ 147 (518)
..++++++++++.+ |.+|. .++++++|++|++++|.+.+.+|..++.+.+| ++|++++|.+++ +
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~-~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l 86 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPV-EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred cccchhhhcccCch-hhCCh-hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence 35788999999999 88988 89999999999999999999999999998865 999999999984 5
Q ss_pred CccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCC
Q 037558 148 PPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLS 227 (518)
Q Consensus 148 p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~ 227 (518)
|.. .++|++|++++|.+.+ +|.. .++|++|++++|.+.+. +.. .++|++|++++|.+++ +| .++.++
T Consensus 87 p~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~ 153 (454)
T 1jl5_A 87 PEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSS 153 (454)
T ss_dssp CSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCT
T ss_pred CCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCC
Confidence 552 3789999999999986 6654 37999999999998853 221 2699999999999996 67 599999
Q ss_pred CCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEcc
Q 037558 228 NLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLN 307 (518)
Q Consensus 228 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 307 (518)
+|++|++++|.+++ +|..+ .+|++|++++|++++ +| .+..+++|++|++++|++++ +|.. .++|++|+++
T Consensus 154 ~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~ 223 (454)
T 1jl5_A 154 FLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAG 223 (454)
T ss_dssp TCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECC
T ss_pred CCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECc
Confidence 99999999999987 55443 589999999999996 56 58999999999999999985 5543 3689999999
Q ss_pred CCcccccCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccC
Q 037558 308 ENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIP 387 (518)
Q Consensus 308 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 387 (518)
+|.+. .+| .+..+++|++|++++|.+++ +|.. ..+++.|++++|.+.+ +|.. .++|+.|++++|.+++ +|
T Consensus 224 ~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~--~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~ 293 (454)
T 1jl5_A 224 NNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL--PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LS 293 (454)
T ss_dssp SSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC--CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ES
T ss_pred CCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc--ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-cc
Confidence 99998 677 48899999999999999985 5543 2789999999999887 4432 3789999999999986 22
Q ss_pred hhhhcCCCCcEEEcccCccccccChhhhCC-CCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCC
Q 037558 388 TSVRNCTSLIRVHLNGNNLTGNISEALAIY-PNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSS 466 (518)
Q Consensus 388 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~ 466 (518)
. ..++|++|++++|++++.. .+ ++|++|++++|++.+ +|.. +++|++|++++|+++ .+|. .++
T Consensus 294 ~---~~~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~ 357 (454)
T 1jl5_A 294 E---LPPNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQ 357 (454)
T ss_dssp C---CCTTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCT
T ss_pred C---cCCcCCEEECcCCcCCccc-----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhh
Confidence 2 1268999999999998632 23 589999999999986 5543 689999999999998 5666 478
Q ss_pred CCCEEeCcCCcCcc--cCCccccCC-------------CCCCEEECcCCcccc--ccCccCccCC
Q 037558 467 QLQALDLSLNHIVG--EIPKELGKL-------------NSLTKLILRGNQRAV--TLSFINKVCS 514 (518)
Q Consensus 467 ~L~~L~L~~n~l~~--~~~~~l~~l-------------~~L~~L~l~~n~~~~--~ip~~l~~l~ 514 (518)
+|++|++++|++.+ .+|.+++.+ ++|++|++++|++.+ .+|.++.++.
T Consensus 358 ~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L~ 422 (454)
T 1jl5_A 358 NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLR 422 (454)
T ss_dssp TCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------------------
T ss_pred hccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhhee
Confidence 99999999999998 788888877 889999999999998 8998876653
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.3e-39 Score=339.49 Aligned_cols=389 Identities=19% Similarity=0.205 Sum_probs=295.5
Q ss_pred CCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEE
Q 037558 81 AGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVF 160 (518)
Q Consensus 81 ~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L 160 (518)
..+++.++++++.+.+..+. .|.++++|++|++++|.+.+..|+.|..+++|++|++++|.++ .+|.. .+++|++|
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L 126 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMP-DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHL 126 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGG-GTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEE
T ss_pred CCCcCEEECCCCCccccChh-hhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEE
Confidence 46899999999999876655 8999999999999999999888999999999999999999998 67776 89999999
Q ss_pred EccCCCCCc-cCCcCCcCCCCCCEEEccCccccccCCccccCCCCC--cEEEcccCcC--CCCcchhccCC---------
Q 037558 161 FLCSNYLNG-SVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSI--FNLDLSSNQF--SGPIPLFFGNL--------- 226 (518)
Q Consensus 161 ~L~~n~~~~-~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L--~~L~l~~n~~--~~~~~~~l~~l--------- 226 (518)
++++|.+.+ .+|..+.++++|++|++++|.+.+. .+..+++| ++|++++|.+ ++..|..+..+
T Consensus 127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l 203 (562)
T 3a79_B 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203 (562)
T ss_dssp ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred ECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence 999999986 4568899999999999999999864 45555666 9999999999 76666666543
Q ss_pred -----------------CCCcEEEcccCcCC----ccccccccCCCCCCEeeCcCCCCccC----CcccccCCCCCcEEE
Q 037558 227 -----------------SNLKSLYLYGNSLS----SPILSSLGKFKSLIDLQLNENQFTGY----IPRSFGNLTSLSTLR 281 (518)
Q Consensus 227 -----------------~~L~~L~l~~n~~~----~~~~~~l~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~ 281 (518)
++|+.+++++|... ......+..++.++.+++.++.+.+. ++..+ ..++|++|+
T Consensus 204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~ 282 (562)
T 3a79_B 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLN 282 (562)
T ss_dssp CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEE
T ss_pred cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEE
Confidence 34455555444210 00011122233333333322222210 00111 123555555
Q ss_pred ccCCcCcccCcccc-----CCC--------------------------CCccEEEccCCcccccCCccCcCCCCCCeeec
Q 037558 282 LSKNELFGSIPDEI-----GKM--------------------------RSLSVLDLNENQFKGVLPPSISNLTNLKELAL 330 (518)
Q Consensus 282 l~~n~l~~~~p~~~-----~~l--------------------------~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 330 (518)
+++|.+++.+|..+ ..+ .+|++|++++|.+.... ....+++|++|++
T Consensus 283 l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 360 (562)
T 3a79_B 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNF 360 (562)
T ss_dssp EEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEEC
T ss_pred EeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEEC
Confidence 55555555555443 112 45777777777765321 1267899999999
Q ss_pred ccccccccCCccccc-ccCcEEEccCccCcc--cCchhhcCCCCccEEecCCCcCccccCh-hhhcCCCCcEEEcccCcc
Q 037558 331 LYNHLSGSIPPSLGN-LILRELLLSGNHFAG--YLPYNICQGGALEIFTVSENHFQGTIPT-SVRNCTSLIRVHLNGNNL 406 (518)
Q Consensus 331 ~~n~l~~~~p~~~~~-~~L~~L~l~~n~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l 406 (518)
++|.+++..|..+.. ++|+.|++++|.+.+ .+|..+..+++|+.|++++|.+.+.+|. .+..+++|++|++++|++
T Consensus 361 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l 440 (562)
T 3a79_B 361 TQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNML 440 (562)
T ss_dssp CSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCC
T ss_pred CCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCC
Confidence 999999888877766 899999999999987 3456788999999999999999985655 477899999999999999
Q ss_pred ccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCcccc-ccCCCCCCEEeCcCCcCcccCC
Q 037558 407 TGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPRE-IGNSSQLQALDLSLNHIVGEIP 483 (518)
Q Consensus 407 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~ 483 (518)
++..+..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+.|++++|++.+..+
T Consensus 441 ~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 441 TGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred Ccchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 987665554 79999999999998 66776779999999999999999 56665 8999999999999999986443
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.3e-38 Score=337.21 Aligned_cols=407 Identities=20% Similarity=0.169 Sum_probs=300.3
Q ss_pred CCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEc
Q 037558 107 PRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFI 186 (518)
Q Consensus 107 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l 186 (518)
+++++|+|++|.+++..+.+|.++++|++|+|++|.+++..|..|.++++|++|+|++|++.+..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 47999999999998888889999999999999999999777778999999999999999999666677999999999999
Q ss_pred cCccccccCCccccCCCCCcEEEcccCcCCC-CcchhccCCCCCcEEEcccCcCCccccccccCCCCC----CEeeCcCC
Q 037558 187 YDNLFSGFIPSDIGNSKSIFNLDLSSNQFSG-PIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSL----IDLQLNEN 261 (518)
Q Consensus 187 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L----~~L~l~~n 261 (518)
++|++++..+..|+++++|++|++++|.+.. ..|..++.+++|++|++++|.+++..+..+..+.++ ..++++.|
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 9999998888889999999999999999975 467888999999999999999998777777655433 35666666
Q ss_pred CCccCCcccccCCCCCcEEEcc----------------------------------------------------------
Q 037558 262 QFTGYIPRSFGNLTSLSTLRLS---------------------------------------------------------- 283 (518)
Q Consensus 262 ~~~~~~~~~l~~l~~L~~L~l~---------------------------------------------------------- 283 (518)
.+....+..+ ....+..+++.
T Consensus 212 ~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 212 PMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred cccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 6553222211 11112222222
Q ss_pred ------------------------CCcCcccCccccCCCCCccEEEccCCcccccCCcc-------------------Cc
Q 037558 284 ------------------------KNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPS-------------------IS 320 (518)
Q Consensus 284 ------------------------~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~-------------------l~ 320 (518)
++.+... ..+.....++.|++.+|.+.+..+.. ..
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~ 368 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 368 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCC
T ss_pred hcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccc
Confidence 2221110 11223345555555555544221111 11
Q ss_pred CCCCCCeeeccccccccc--CCcccc-cccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccC-hhhhcCCCC
Q 037558 321 NLTNLKELALLYNHLSGS--IPPSLG-NLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIP-TSVRNCTSL 396 (518)
Q Consensus 321 ~l~~L~~L~l~~n~l~~~--~p~~~~-~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L 396 (518)
.+++|+.+++++|.+... .+.... ...++.+++..+.... .+..+..+++|+.+++..+......+ ..+..+.++
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccc
Confidence 233344444444333211 111111 1334444444443332 22334556677777777665544333 456778999
Q ss_pred cEEEcccCccccccChhhhCCCCCCEEecccCccc-cccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcC
Q 037558 397 IRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFY-GEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSL 475 (518)
Q Consensus 397 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~ 475 (518)
+.++++.|.+.+..+..+..+++++.|++++|++. +..|..+..+++|++|++++|++++..|..|.++++|++|+|++
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence 99999999999888999999999999999999854 45788899999999999999999988899999999999999999
Q ss_pred CcCcccCCccccCCCCCCEEECcCCccccccCccCccC-CCCC
Q 037558 476 NHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINKVC-SSLE 517 (518)
Q Consensus 476 n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip~~l~~l-~~L~ 517 (518)
|++.+..|..+..+++|++|++++|++.+.+|..+.++ ++|+
T Consensus 528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~ 570 (635)
T 4g8a_A 528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 570 (635)
T ss_dssp SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCC
T ss_pred CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCC
Confidence 99999989999999999999999999999999988877 4564
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.5e-38 Score=320.71 Aligned_cols=347 Identities=24% Similarity=0.367 Sum_probs=289.1
Q ss_pred CCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCE
Q 037558 104 SSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISL 183 (518)
Q Consensus 104 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~ 183 (518)
..++++++|+++++.+.. ++ .+..+++|++|++++|.+++ +|. ++++++|++|++++|.+.+..+ +.++++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCC-chh-hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 346789999999998854 44 48889999999999999985 444 9999999999999999985544 899999999
Q ss_pred EEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCC
Q 037558 184 LFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQF 263 (518)
Q Consensus 184 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 263 (518)
|++++|.+.+..+ +.++++|++|++++|.+.+. + .+..+++|++|+++ +.+.+. ..+..+++|++|++++|.+
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l 189 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKV 189 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcC
Confidence 9999999987643 89999999999999999853 3 48899999999997 444442 2388999999999999998
Q ss_pred ccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCccc
Q 037558 264 TGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSL 343 (518)
Q Consensus 264 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~ 343 (518)
.+. ..+..+++|++|++++|.+.+..| ++.+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+..+ ..
T Consensus 190 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~ 262 (466)
T 1o6v_A 190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-LS 262 (466)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GT
T ss_pred CCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-hh
Confidence 854 348889999999999999986555 67789999999999999853 467889999999999999886544 33
Q ss_pred ccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEE
Q 037558 344 GNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFI 423 (518)
Q Consensus 344 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 423 (518)
..++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|++++..+ +..+++|+.|
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 336 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL 336 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred cCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEe
Confidence 34789999999998887654 7788899999999998886544 7788999999999999887665 6788999999
Q ss_pred ecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcc
Q 037558 424 DLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVG 480 (518)
Q Consensus 424 ~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 480 (518)
++++|++.+. ..+..+++|++|++++|++.+..| +..+++|+.|++++|++++
T Consensus 337 ~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 337 FFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp ECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 9999988865 467888999999999999887666 7888999999999998876
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.1e-37 Score=319.00 Aligned_cols=344 Identities=25% Similarity=0.364 Sum_probs=296.0
Q ss_pred CCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEE
Q 037558 82 GRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF 161 (518)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 161 (518)
.+++.++++++.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. +. ++++++|++|+
T Consensus 46 ~~l~~L~l~~~~i~~-l~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-TP-LANLTNLTGLT 118 (466)
T ss_dssp HTCCEEECCSSCCCC-CT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEE
T ss_pred ccccEEecCCCCCcc-Cc--chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccC-hh-hcCCCCCCEEE
Confidence 478999999988764 44 47889999999999999876544 99999999999999999854 44 99999999999
Q ss_pred ccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCc
Q 037558 162 LCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSS 241 (518)
Q Consensus 162 L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 241 (518)
+++|.+.+. +. +.++++|++|++++|.+.+. + .+..+++|++|+++ +.+.+.. .+..+++|++|++++|.+.+
T Consensus 119 L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 119 LFNNQITDI-DP-LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSD 191 (466)
T ss_dssp CCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCCC-hH-HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCC
Confidence 999999854 33 89999999999999998864 3 58999999999997 4454333 38899999999999999887
Q ss_pred cccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcC
Q 037558 242 PILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISN 321 (518)
Q Consensus 242 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 321 (518)
. ..+..+++|++|++++|.+.+..| +..+++|++|++++|.+++ + ..+..+++|++|++++|.+.+..+ +..
T Consensus 192 ~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 263 (466)
T 1o6v_A 192 I--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSG 263 (466)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred C--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--hhc
Confidence 3 458899999999999999987655 7789999999999999875 3 357889999999999999986544 788
Q ss_pred CCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEc
Q 037558 322 LTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHL 401 (518)
Q Consensus 322 l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 401 (518)
+++|+.|++++|.+++..+ ....+.|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..| +..+++|++|++
T Consensus 264 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l 338 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFF 338 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEEC
T ss_pred CCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeEC
Confidence 9999999999999986444 3344899999999999988655 7888999999999999997765 778999999999
Q ss_pred ccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCcccc
Q 037558 402 NGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITG 456 (518)
Q Consensus 402 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~ 456 (518)
++|++++. ..+..+++|+.|++++|++.+..| +..+++|++|++++|.+++
T Consensus 339 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 339 YNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 99999976 578899999999999999998776 8899999999999999986
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=6.3e-38 Score=318.50 Aligned_cols=354 Identities=18% Similarity=0.203 Sum_probs=227.2
Q ss_pred CCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEE
Q 037558 82 GRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF 161 (518)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 161 (518)
.+++.++++++.+.+. | .+..+++|++|++++|.+.+. + ++.+++|++|++++|.+++ ++ ++++++|++|+
T Consensus 42 ~~L~~L~Ls~n~l~~~-~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLN 112 (457)
T ss_dssp TTCCEEECCSSCCCCC-T--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred CCCCEEEccCCCcccC-h--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEE
Confidence 4566666666666653 2 466666666666666666553 2 5666666666666666664 22 66666666666
Q ss_pred ccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCc
Q 037558 162 LCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSS 241 (518)
Q Consensus 162 L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 241 (518)
+++|.+.+ +| +.++++|++|++++|.+++. .++.+++|++|++++|...+.+ .+..+++|++|++++|.+++
T Consensus 113 L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 113 CDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp CCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC
T ss_pred CCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce
Confidence 66666664 33 56666666666666666653 2566666666666666444333 35566666666666666665
Q ss_pred cccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcC
Q 037558 242 PILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISN 321 (518)
Q Consensus 242 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 321 (518)
++ +..+++|+.|++++|.+++. .+..+++|++|++++|++++ +| +..+++|++|++++|.+++.. ...
T Consensus 185 -l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~ 252 (457)
T 3bz5_A 185 -LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VST 252 (457)
T ss_dssp -CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTT
T ss_pred -ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHH
Confidence 22 55666666666666666643 25566666666666666664 44 556666666666666666432 334
Q ss_pred CCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEc
Q 037558 322 LTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHL 401 (518)
Q Consensus 322 l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 401 (518)
+++|+.|+++.| .++.+++++|.+.+.+| ...+++|+.|++++|...+.+|. ..++|+.|++
T Consensus 253 l~~L~~L~l~~n-------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l 314 (457)
T 3bz5_A 253 LSKLTTLHCIQT-------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDL 314 (457)
T ss_dssp CTTCCEEECTTC-------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCC
T ss_pred CCCCCEEeccCC-------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEech
Confidence 556666665544 34566677777666665 35567777777777776666553 2344554444
Q ss_pred ccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCccc
Q 037558 402 NGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGE 481 (518)
Q Consensus 402 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 481 (518)
++ +++|++|++++|++++. + +..+++|+.|++++|++++ ++.|..|++++|.+.|.
T Consensus 315 ~~-------------~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~ 370 (457)
T 3bz5_A 315 SQ-------------NPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE 370 (457)
T ss_dssp TT-------------CTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE
T ss_pred hh-------------cccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec
Confidence 44 36888889999988874 2 7788889999999988875 24567778888888765
Q ss_pred CCccccCCCCCCEEECcCCccccccCccCc
Q 037558 482 IPKELGKLNSLTKLILRGNQRAVTLSFINK 511 (518)
Q Consensus 482 ~~~~l~~l~~L~~L~l~~n~~~~~ip~~l~ 511 (518)
+.+..|..+++++|+++|.||..+.
T Consensus 371 -----~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 371 -----GQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp -----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred -----ceeeecCccccccCcEEEEcChhHh
Confidence 3455677788999999999887653
No 32
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.3e-37 Score=312.89 Aligned_cols=359 Identities=22% Similarity=0.260 Sum_probs=277.9
Q ss_pred CCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCC-------------cEEEccCCCCCccC
Q 037558 105 SFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSM-------------EVFFLCSNYLNGSV 171 (518)
Q Consensus 105 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L-------------~~L~L~~n~~~~~~ 171 (518)
+.+.|++|++++|.+ +.+|++++++++|++|++++|.+.+.+|..++++.+| ++|++++|.+.+ +
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence 468999999999999 8999999999999999999999999999999998865 999999999884 4
Q ss_pred CcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCC
Q 037558 172 PPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFK 251 (518)
Q Consensus 172 p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 251 (518)
|.. .++|++|++++|.+++ +|.. .++|++|++++|.+++ ++.. .++|++|++++|.+++ +| .++.++
T Consensus 87 p~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~ 153 (454)
T 1jl5_A 87 PEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSS 153 (454)
T ss_dssp CSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCT
T ss_pred CCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCC
Confidence 542 3789999999999997 5643 4899999999999985 3321 2689999999999997 66 599999
Q ss_pred CCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecc
Q 037558 252 SLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALL 331 (518)
Q Consensus 252 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 331 (518)
+|++|++++|++++ +|.. .++|++|++++|++++ +| .++.+++|++|++++|.+.+ +|.. .++|++|+++
T Consensus 154 ~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~ 223 (454)
T 1jl5_A 154 FLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAG 223 (454)
T ss_dssp TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECC
T ss_pred CCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECc
Confidence 99999999999986 5553 3589999999999986 66 58999999999999999985 4543 3689999999
Q ss_pred cccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccC
Q 037558 332 YNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNIS 411 (518)
Q Consensus 332 ~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 411 (518)
+|.+. .+|.....++|++|++++|.+.+. |. ..++|+.|++++|.+.+ +|.. .++|++|++++|++++...
T Consensus 224 ~n~l~-~lp~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~ 294 (454)
T 1jl5_A 224 NNILE-ELPELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSE 294 (454)
T ss_dssp SSCCS-SCCCCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESC
T ss_pred CCcCC-cccccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccC
Confidence 99998 677644448999999999999863 33 23789999999999985 5543 4899999999999997321
Q ss_pred hhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCccccCCCC
Q 037558 412 EALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNS 491 (518)
Q Consensus 412 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 491 (518)
..++|+.|++++|++.+. +. ..++|++|++++|++.+ +|.. +++|++|++++|++. .+|. .+++
T Consensus 295 ----~~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~ 358 (454)
T 1jl5_A 295 ----LPPNLYYLNASSNEIRSL-CD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQN 358 (454)
T ss_dssp ----CCTTCCEEECCSSCCSEE-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTT
T ss_pred ----cCCcCCEEECcCCcCCcc-cC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhh
Confidence 126899999999999853 21 12599999999999995 6654 589999999999998 5666 5799
Q ss_pred CCEEECcCCcccc--ccCccCccC
Q 037558 492 LTKLILRGNQRAV--TLSFINKVC 513 (518)
Q Consensus 492 L~~L~l~~n~~~~--~ip~~l~~l 513 (518)
|++|++++|++.+ .+|.++.++
T Consensus 359 L~~L~L~~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 359 LKQLHVEYNPLREFPDIPESVEDL 382 (454)
T ss_dssp CCEEECCSSCCSSCCCCCTTCCEE
T ss_pred ccEEECCCCCCCcCCCChHHHHhh
Confidence 9999999999999 899888766
No 33
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.8e-37 Score=313.99 Aligned_cols=321 Identities=19% Similarity=0.198 Sum_probs=259.0
Q ss_pred CCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEccc
Q 037558 133 LKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSS 212 (518)
Q Consensus 133 L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 212 (518)
-+.++.+++.++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+.+..|..+.++++|++|++++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 367888888887 6787664 5899999999999988788999999999999999999988899999999999999999
Q ss_pred CcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCc
Q 037558 213 NQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIP 292 (518)
Q Consensus 213 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 292 (518)
|.++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 99987666778899999999999999998888889999999999999999988888888899999999999999987666
Q ss_pred cccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCccccc-ccCcEEEccCccCcccCchhhcCCCC
Q 037558 293 DEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGN-LILRELLLSGNHFAGYLPYNICQGGA 371 (518)
Q Consensus 293 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~~ 371 (518)
..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.+|..... .+|+.|++++|.+.+..+..+..+++
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 249 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc
Confidence 77888999999999999998877778888899999999988776666554333 56777777777777555556666777
Q ss_pred ccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccC
Q 037558 372 LEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSM 451 (518)
Q Consensus 372 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~ 451 (518)
|+.|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|++|++++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCS
T ss_pred cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccC
Confidence 77777777777665566666677777777777777766666667777777777777777655555566666777777777
Q ss_pred Ccccc
Q 037558 452 NNITG 456 (518)
Q Consensus 452 n~l~~ 456 (518)
|++..
T Consensus 330 N~l~c 334 (477)
T 2id5_A 330 NPLAC 334 (477)
T ss_dssp SCEEC
T ss_pred CCccC
Confidence 76653
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-36 Score=311.72 Aligned_cols=321 Identities=19% Similarity=0.190 Sum_probs=288.5
Q ss_pred cEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCc
Q 037558 110 AYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDN 189 (518)
Q Consensus 110 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n 189 (518)
+.++.+++.+. .+|..+ .+++++|++++|.+++..|..|.++++|++|++++|.+.+..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 56788887774 456544 368999999999999888889999999999999999999888999999999999999999
Q ss_pred cccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcc
Q 037558 190 LFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPR 269 (518)
Q Consensus 190 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 269 (518)
.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 99987777789999999999999999988888999999999999999999998888999999999999999999987777
Q ss_pred cccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCccccc-ccC
Q 037558 270 SFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGN-LIL 348 (518)
Q Consensus 270 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-~~L 348 (518)
.+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.++.......+|+.|++++|.+++..+..+.. +.|
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence 8999999999999999999888888999999999999999888777777667779999999999998433334444 889
Q ss_pred cEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccC
Q 037558 349 RELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRN 428 (518)
Q Consensus 349 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 428 (518)
+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 99999999999888888999999999999999999888999999999999999999999888888899999999999999
Q ss_pred ccccc
Q 037558 429 NFYGE 433 (518)
Q Consensus 429 ~l~~~ 433 (518)
++...
T Consensus 331 ~l~c~ 335 (477)
T 2id5_A 331 PLACD 335 (477)
T ss_dssp CEECS
T ss_pred CccCc
Confidence 98743
No 35
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=9e-36 Score=302.64 Aligned_cols=376 Identities=17% Similarity=0.147 Sum_probs=272.1
Q ss_pred CCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEE
Q 037558 81 AGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVF 160 (518)
Q Consensus 81 ~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L 160 (518)
..+++.++++++.+.+. .+..+++|++|++++|.+.+. + ++.+++|++|++++|.+++ +| ++++++|++|
T Consensus 63 l~~L~~L~Ls~n~l~~~----~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L 132 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTL----DLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYL 132 (457)
T ss_dssp CTTCSEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEE
T ss_pred cCCCCEEEccCCcCCeE----ccccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEE
Confidence 46899999999998873 388999999999999999874 3 8999999999999999985 54 8999999999
Q ss_pred EccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCC
Q 037558 161 FLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLS 240 (518)
Q Consensus 161 ~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 240 (518)
++++|.+.+ + .++++++|++|++++|+..+.+ .+..+++|++|++++|.+++ +| +..+++|+.|++++|.++
T Consensus 133 ~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 133 NCARNTLTE-I--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp ECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCS
T ss_pred ECCCCccce-e--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCC
Confidence 999999986 3 3889999999999999766555 48899999999999999996 44 788999999999999999
Q ss_pred ccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCC----------c
Q 037558 241 SPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNEN----------Q 310 (518)
Q Consensus 241 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n----------~ 310 (518)
+. .++.+++|++|++++|++++ +| +..+++|++|++++|++++.. +..+++|+.|++++| .
T Consensus 205 ~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L~~L~l~~n~ 275 (457)
T 3bz5_A 205 KL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEIDLTHNT 275 (457)
T ss_dssp CC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCCCSCCCCTTCT
T ss_pred ee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCCCCEEECCCCc
Confidence 84 48889999999999999997 55 889999999999999998754 345666666665554 3
Q ss_pred ccccCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhh
Q 037558 311 FKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSV 390 (518)
Q Consensus 311 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 390 (518)
+.+.+| ++.+++|+.|++++|...+.+|. ....++.+++++| ++|+.|++++|++++. + +
T Consensus 276 ~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~--~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l 335 (457)
T 3bz5_A 276 QLIYFQ--AEGCRKIKELDVTHNTQLYLLDC--QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--V 335 (457)
T ss_dssp TCCEEE--CTTCTTCCCCCCTTCTTCCEEEC--TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--C
T ss_pred cCCccc--ccccccCCEEECCCCcccceecc--CCCcceEechhhc-------------ccCCEEECCCCccccc-c--c
Confidence 333332 34455666666666655544442 1133444444333 5778888888888763 2 6
Q ss_pred hcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCcccccc-CCCCCC
Q 037558 391 RNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIG-NSSQLQ 469 (518)
Q Consensus 391 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~-~l~~L~ 469 (518)
..+++|+.|++++|++++ ++.|..|++++|.+.|. ..+..|+.+++++|+++|.+|..+. ...++.
T Consensus 336 ~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~ 402 (457)
T 3bz5_A 336 SHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQFGNPM 402 (457)
T ss_dssp TTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCTTSCCC
T ss_pred ccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhcccCcee
Confidence 778888888888888775 24566667777877765 2345677788888888888876543 334444
Q ss_pred EEeCcCCcCcccCCc--cccCCC-----CCCEEECcCCccccccCccCccCCCC
Q 037558 470 ALDLSLNHIVGEIPK--ELGKLN-----SLTKLILRGNQRAVTLSFINKVCSSL 516 (518)
Q Consensus 470 ~L~L~~n~l~~~~~~--~l~~l~-----~L~~L~l~~n~~~~~ip~~l~~l~~L 516 (518)
......+........ .+.+++ -+.....++|.++|+|++.+.....+
T Consensus 403 ~~~~~~~~~y~~~~~~i~~k~~~~~~~~~~y~~~~~~~~fsG~i~~p~~~~~~~ 456 (457)
T 3bz5_A 403 NIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGTVTTPFEAPQPI 456 (457)
T ss_dssp EEEESSSEEEETTTTEEEESSCCTTSCEECEEEECTTSSEEEEEEEEBC-----
T ss_pred eccCCCCccccCCCCeeEEEeccCCCceEEEEEecCCcEEeeEecccccccccC
Confidence 444443322111110 111222 22233445788999998777655443
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.7e-35 Score=291.53 Aligned_cols=313 Identities=16% Similarity=0.165 Sum_probs=219.7
Q ss_pred CCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCE
Q 037558 104 SSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISL 183 (518)
Q Consensus 104 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~ 183 (518)
..+++++.|+++++.+....+..+..+++|++|++++|.+++..+..++++++|++|++++|.+.+..|..+.++++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 35678888999888876554455788888999999888888666678888888888888888888777777888888888
Q ss_pred EEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCC
Q 037558 184 LFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQF 263 (518)
Q Consensus 184 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 263 (518)
|++++|.+....+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+++|+.|++++|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 88888888755555567788888888888888776666777777788888777777653 244556667777766665
Q ss_pred ccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCccc
Q 037558 264 TGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSL 343 (518)
Q Consensus 264 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~ 343 (518)
.+ +...++|++|++++|.+... |.. ..++|++|++++|.+.+. ..+..++
T Consensus 199 ~~-----~~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~-------------------- 248 (390)
T 3o6n_A 199 ST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYP-------------------- 248 (390)
T ss_dssp SE-----EECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCT--------------------
T ss_pred cc-----cCCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCC--------------------
Confidence 53 22334566666666665532 221 234555555555555532 2344444
Q ss_pred ccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEE
Q 037558 344 GNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFI 423 (518)
Q Consensus 344 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 423 (518)
.|++|++++|.+.+..|..+..+++|+.|++++|.+.+ +|..+..+++|++|++++|+++ .++..+..+++|++|
T Consensus 249 ---~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L 323 (390)
T 3o6n_A 249 ---GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 323 (390)
T ss_dssp ---TCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred ---CccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEE
Confidence 45555555555555555666667777777777777763 4555567788888888888887 455567778888888
Q ss_pred ecccCccccccCccccCCCCCCEEEccCCccccC
Q 037558 424 DLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGG 457 (518)
Q Consensus 424 ~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~ 457 (518)
++++|++... + +..+++|++|++++|++.+.
T Consensus 324 ~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 324 YLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp ECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred ECCCCcccee-C--chhhccCCEEEcCCCCccch
Confidence 8888888744 2 66788899999999988753
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.8e-34 Score=301.57 Aligned_cols=311 Identities=16% Similarity=0.195 Sum_probs=209.1
Q ss_pred CCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEE
Q 037558 105 SFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLL 184 (518)
Q Consensus 105 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L 184 (518)
.+.+++.+++++|.+....+..+..+++|++|++++|.+++..|..|+++++|++|++++|.+.+..|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 46788899999888866555667888999999999999887777788889999999999998887777778888888888
Q ss_pred EccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCc
Q 037558 185 FIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFT 264 (518)
Q Consensus 185 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 264 (518)
++++|.+++..+..+.++++|++|++++|.+++..|..++.+++|++|++++|.+++. .+..+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccc
Confidence 8888888866666678888888888888888877777788888888888888887763 2445667777777777665
Q ss_pred cCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCcccc
Q 037558 265 GYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLG 344 (518)
Q Consensus 265 ~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~ 344 (518)
+ +...++|+.|++++|.+.. ++..+ .++|+.|++++|.+++ +..+..+++|+.|++++|.+.+..|
T Consensus 206 ~-----l~~~~~L~~L~ls~n~l~~-~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~---- 271 (597)
T 3oja_B 206 T-----LAIPIAVEELDASHNSINV-VRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY---- 271 (597)
T ss_dssp E-----EECCTTCSEEECCSSCCCE-EECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEES----
T ss_pred c-----ccCCchhheeeccCCcccc-ccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCH----
Confidence 3 2344567777777776653 22222 3566677777766664 2445555666666666555554444
Q ss_pred cccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEe
Q 037558 345 NLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFID 424 (518)
Q Consensus 345 ~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 424 (518)
..+..+++|+.|++++|.+.+ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+
T Consensus 272 -------------------~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~ 330 (597)
T 3oja_B 272 -------------------HPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 330 (597)
T ss_dssp -------------------GGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred -------------------HHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEE
Confidence 444444455555555555543 3333444555555555555555 3344455555566666
Q ss_pred cccCccccccCccccCCCCCCEEEccCCcccc
Q 037558 425 LSRNNFYGEISSNWGKCPKLDTLNVSMNNITG 456 (518)
Q Consensus 425 L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~ 456 (518)
+++|.+.+. + +..+++|+.|++++|++.+
T Consensus 331 L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 331 LDHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CCSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred CCCCCCCCc-C--hhhcCCCCEEEeeCCCCCC
Confidence 665555532 1 3445566666666665543
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.7e-34 Score=286.15 Aligned_cols=310 Identities=21% Similarity=0.229 Sum_probs=211.1
Q ss_pred CCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEE
Q 037558 154 LSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLY 233 (518)
Q Consensus 154 l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 233 (518)
++++++|++++|.+....+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..++.+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 57899999999988744444468889999999999999888777889999999999999999887778888889999999
Q ss_pred cccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccc
Q 037558 234 LYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKG 313 (518)
Q Consensus 234 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 313 (518)
+++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++. .+..+++|+++++++|.+.+
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc
Confidence 999888875555567888888888888888877777788888888888888887743 24556778888888877763
Q ss_pred cCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcC
Q 037558 314 VLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNC 393 (518)
Q Consensus 314 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 393 (518)
+...++|+.|++++|.+... |... .++|+.|++++|.+.+. ..+..+
T Consensus 201 -----~~~~~~L~~L~l~~n~l~~~-~~~~-------------------------~~~L~~L~l~~n~l~~~--~~l~~l 247 (390)
T 3o6n_A 201 -----LAIPIAVEELDASHNSINVV-RGPV-------------------------NVELTILKLQHNNLTDT--AWLLNY 247 (390)
T ss_dssp -----EECCSSCSEEECCSSCCCEE-ECCC-------------------------CSSCCEEECCSSCCCCC--GGGGGC
T ss_pred -----cCCCCcceEEECCCCeeeec-cccc-------------------------cccccEEECCCCCCccc--HHHcCC
Confidence 23345677777777766532 2111 13444555555544432 344555
Q ss_pred CCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeC
Q 037558 394 TSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDL 473 (518)
Q Consensus 394 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L 473 (518)
++|++|++++|++++..+..+..+++|++|++++|++.+ ++..+..+++|++|++++|++. .+|..+..+++|++|++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L 325 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 325 (390)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEEC
Confidence 566666666666665555556666666666666666553 2333445566666666666665 34545555566666666
Q ss_pred cCCcCcccCCccccCCCCCCEEECcCCcccc
Q 037558 474 SLNHIVGEIPKELGKLNSLTKLILRGNQRAV 504 (518)
Q Consensus 474 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 504 (518)
++|++.+. + +..+++|++|++++|++.+
T Consensus 326 ~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 326 DHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred CCCcccee-C--chhhccCCEEEcCCCCccc
Confidence 66665533 2 4455666666666666554
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.3e-33 Score=273.35 Aligned_cols=307 Identities=22% Similarity=0.346 Sum_probs=204.6
Q ss_pred CCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCc
Q 037558 151 VGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLK 230 (518)
Q Consensus 151 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 230 (518)
+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.++. + ..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCS
T ss_pred chhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCC
Confidence 345677788888877776 333 36677777777777777765433 6677777777777776664 2 2466666777
Q ss_pred EEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCc
Q 037558 231 SLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQ 310 (518)
Q Consensus 231 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 310 (518)
+|++++|.+.+..+ +..+++|+.|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence 77777666665222 5566666666666664443332 25556666666666665543222 4555566666666655
Q ss_pred ccccCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhh
Q 037558 311 FKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSV 390 (518)
Q Consensus 311 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 390 (518)
+.+. +. +..+++|+.+++++| .+.+..+ +..+++|+.|++++|.+.+..+ +
T Consensus 189 l~~~-~~-~~~l~~L~~L~l~~n-----------------------~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~ 239 (347)
T 4fmz_A 189 IEDI-SP-LASLTSLHYFTAYVN-----------------------QITDITP--VANMTRLNSLKIGNNKITDLSP--L 239 (347)
T ss_dssp CCCC-GG-GGGCTTCCEEECCSS-----------------------CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred cccc-cc-ccCCCccceeecccC-----------------------CCCCCch--hhcCCcCCEEEccCCccCCCcc--h
Confidence 5532 21 444455555555544 4443332 4556677777777777764333 6
Q ss_pred hcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCE
Q 037558 391 RNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQA 470 (518)
Q Consensus 391 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~ 470 (518)
..+++|++|++++|++++. ..+..+++|++|++++|++.+. ..+..+++|++|++++|++.+..+..+..+++|++
T Consensus 240 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 315 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSE
T ss_pred hcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCE
Confidence 7788888888888888754 4677888888888888888754 45778889999999999988888888888999999
Q ss_pred EeCcCCcCcccCCccccCCCCCCEEECcCCccc
Q 037558 471 LDLSLNHIVGEIPKELGKLNSLTKLILRGNQRA 503 (518)
Q Consensus 471 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 503 (518)
|++++|++.+..| +..+++|++|++++|++.
T Consensus 316 L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 316 LFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEccCCccccccC--hhhhhccceeehhhhccc
Confidence 9999999887665 788999999999999874
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.1e-33 Score=297.89 Aligned_cols=310 Identities=22% Similarity=0.223 Sum_probs=210.1
Q ss_pred CCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEE
Q 037558 154 LSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLY 233 (518)
Q Consensus 154 l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 233 (518)
+.+++.+++++|.+....+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..|+.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 56889999999998855555578889999999999999988888899999999999999999888888888899999999
Q ss_pred cccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccc
Q 037558 234 LYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKG 313 (518)
Q Consensus 234 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 313 (518)
+++|.+++..+..|+.+++|++|++++|.+.+..|..+..+++|++|++++|.+++. + +..+++|+.|++++|.+.+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCcccc
Confidence 999988876666678888888888888888887777788888888888888888753 2 4557788888888887763
Q ss_pred cCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcC
Q 037558 314 VLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNC 393 (518)
Q Consensus 314 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 393 (518)
+...++|+.|++++|.+....+.. .+.|+.|++++|.+.+. ..+..+
T Consensus 207 -----l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~--------------------------~~l~~l 253 (597)
T 3oja_B 207 -----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--------------------------AWLLNY 253 (597)
T ss_dssp -----EECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC--------------------------GGGGGC
T ss_pred -----ccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC--------------------------hhhccC
Confidence 234456777777777765322211 13455555555554432 334445
Q ss_pred CCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeC
Q 037558 394 TSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDL 473 (518)
Q Consensus 394 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L 473 (518)
++|+.|++++|.+++..|..+..+++|+.|+|++|.+.+ +|..+..+++|++|++++|.+. .+|..+..+++|+.|++
T Consensus 254 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L 331 (597)
T 3oja_B 254 PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 331 (597)
T ss_dssp TTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEEC
T ss_pred CCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEEC
Confidence 555555555555555555555555555555555555553 2333444555555555555555 34444555555555555
Q ss_pred cCCcCcccCCccccCCCCCCEEECcCCcccc
Q 037558 474 SLNHIVGEIPKELGKLNSLTKLILRGNQRAV 504 (518)
Q Consensus 474 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 504 (518)
++|++.+. + +..+++|+.|++++|++.+
T Consensus 332 ~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 332 DHNSIVTL-K--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CSSCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred CCCCCCCc-C--hhhcCCCCEEEeeCCCCCC
Confidence 55555432 1 3445555555555555543
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.5e-33 Score=274.60 Aligned_cols=308 Identities=22% Similarity=0.374 Sum_probs=169.6
Q ss_pred cCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCC
Q 037558 102 SFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHI 181 (518)
Q Consensus 102 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L 181 (518)
.+..+++|++|+++++.+.. ++ .+..+++|++|++++|.+++ ++. +.++++|++|++++|.+.+ + +.+.++++|
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L 112 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNL 112 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTC
T ss_pred cchhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcC
Confidence 35567888888888887754 33 37778888888888888773 444 7788888888888887763 3 357777777
Q ss_pred CEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCC
Q 037558 182 SLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNEN 261 (518)
Q Consensus 182 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 261 (518)
++|++++|.+.+..+ +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus 113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred CEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 777777777765422 6667777777777765443333 25666666666666666554222 455555555555555
Q ss_pred CCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCc
Q 037558 262 QFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPP 341 (518)
Q Consensus 262 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 341 (518)
.+.+..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+.+. +. +..+++|++|++++|.++
T Consensus 188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~----- 256 (347)
T 4fmz_A 188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL-SP-LANLSQLTWLEIGTNQIS----- 256 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-----
T ss_pred ccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCC-cc-hhcCCCCCEEECCCCccC-----
Confidence 5543221 4445555555555555443222 34444555555555544422 11 333344444444333332
Q ss_pred ccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCC
Q 037558 342 SLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLT 421 (518)
Q Consensus 342 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 421 (518)
+. ..+..+++|++|++++|++++. ..+..+++|+
T Consensus 257 ------------------------------------------~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~ 290 (347)
T 4fmz_A 257 ------------------------------------------DI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLN 290 (347)
T ss_dssp ------------------------------------------CC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred ------------------------------------------CC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCC
Confidence 11 1233344444444444444432 2344455555
Q ss_pred EEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCc
Q 037558 422 FIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIV 479 (518)
Q Consensus 422 ~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 479 (518)
.|++++|++.+..+..+..+++|++|++++|++++..| +..+++|++|++++|+++
T Consensus 291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 55555555554444445555555555555555554333 445555555555555543
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=1.8e-34 Score=280.75 Aligned_cols=283 Identities=19% Similarity=0.256 Sum_probs=172.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCCCCCCcCCCCCCCCCCCCCccCceeeCC---------CCCEEEEEcCCCCCccccCC
Q 037558 30 SEPNEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCAWYGISCND---------AGRVINISLRNTGLSGTLHG 100 (518)
Q Consensus 30 ~~~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~c~w~g~~c~~---------~~~v~~l~l~~~~~~~~~~~ 100 (518)
++..+|++||++||+.+..++.....+|..+. ....++|.|.|+.|+. ..+|+.++++++.+. .+|.
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~---~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~ 98 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQAN---SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD 98 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHT---TTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhcccc---cccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh
Confidence 45578999999999988655555567784210 0126899999999952 234555555555544 3333
Q ss_pred ccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCC
Q 037558 101 FSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSH 180 (518)
Q Consensus 101 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~ 180 (518)
.+.++++|++|++++|.+. .+|..++.+++|++|++++|.++ .+|..++++++|++|++++|.+.+.+|..+...
T Consensus 99 -~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~-- 173 (328)
T 4fcg_A 99 -QAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST-- 173 (328)
T ss_dssp -CGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE--
T ss_pred -hhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc--
Confidence 3444455555555554444 44444444445555555544444 444444444444444444444444444433320
Q ss_pred CCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcC
Q 037558 181 ISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNE 260 (518)
Q Consensus 181 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 260 (518)
..+..+.++++|++|++++|.++ .+|..+..+++|++|++++|.+++ +|..+..+++|++|++++
T Consensus 174 -------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 174 -------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp -------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTT
T ss_pred -------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcC
Confidence 00011223667777777777666 566666677777777777777665 445566777777777777
Q ss_pred CCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeeccccccc
Q 037558 261 NQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLS 336 (518)
Q Consensus 261 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 336 (518)
|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.+++..+.+.
T Consensus 239 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 7777677777777777777777777777777777777777777777777777777777777777777777665443
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.9e-33 Score=269.70 Aligned_cols=253 Identities=28% Similarity=0.449 Sum_probs=178.3
Q ss_pred CCCEeeCcCCCCcc--CCcccccCCCCCcEEEccC-CcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCee
Q 037558 252 SLIDLQLNENQFTG--YIPRSFGNLTSLSTLRLSK-NELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKEL 328 (518)
Q Consensus 252 ~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~-n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 328 (518)
+++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 34445555555544 4445555555555555552 44444555555555555555555555555555555555555555
Q ss_pred ecccccccccCCccccc-ccCcEEEccCccCcccCchhhcCCC-CccEEecCCCcCccccChhhhcCCCCcEEEcccCcc
Q 037558 329 ALLYNHLSGSIPPSLGN-LILRELLLSGNHFAGYLPYNICQGG-ALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNL 406 (518)
Q Consensus 329 ~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 406 (518)
++++|.+++.+|..+.. ++|++|++++|.+.+.+|..+..+. +|+.|++++|.+.+.+|..+..++ |++|++++|++
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 55555555555544433 5555556666666656666666666 788888888888877888888776 88999999988
Q ss_pred ccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCccc
Q 037558 407 TGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKEL 486 (518)
Q Consensus 407 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 486 (518)
++..+..+..+++|+.|++++|++.+..+. +..+++|++|++++|++++.+|..+..+++|++|++++|++.+.+|..
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~- 287 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG- 287 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-
Confidence 888888888899999999999998866665 778899999999999999889999999999999999999999888876
Q ss_pred cCCCCCCEEECcCCccccccC
Q 037558 487 GKLNSLTKLILRGNQRAVTLS 507 (518)
Q Consensus 487 ~~l~~L~~L~l~~n~~~~~ip 507 (518)
+.+++|+.+++++|+.....|
T Consensus 288 ~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp TTGGGSCGGGTCSSSEEESTT
T ss_pred ccccccChHHhcCCCCccCCC
Confidence 888999999999998443333
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=2.6e-36 Score=308.76 Aligned_cols=379 Identities=18% Similarity=0.130 Sum_probs=218.2
Q ss_pred CCCcEEeCCCCCCcccCCc-cccCCCCCCEEECCCCCCCc----CCCccCCCCCCCcEEEccCCCCCccCCcCC-cCCC-
Q 037558 107 PRLAYLDLTGSGLFGTIPP-EVGLLSHLKFLFIDTNKLDG----SIPPEVGQLSSMEVFFLCSNYLNGSVPPSL-GNLS- 179 (518)
Q Consensus 107 ~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~----~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l-~~l~- 179 (518)
++|++|+++++.+...... .+..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4677788877777544322 25667777888887777763 345556667777777777777654322222 1233
Q ss_pred ---CCCEEEccCccccc----cCCccccCCCCCcEEEcccCcCCCCcchhcc-----CCCCCcEEEcccCcCCccc----
Q 037558 180 ---HISLLFIYDNLFSG----FIPSDIGNSKSIFNLDLSSNQFSGPIPLFFG-----NLSNLKSLYLYGNSLSSPI---- 243 (518)
Q Consensus 180 ---~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~~~~~~---- 243 (518)
+|++|++++|.+.+ .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 57777777776663 3355566666666666666666543332221 2345666666666555422
Q ss_pred cccccCCCCCCEeeCcCCCCccCCccccc-----CCCCCcEEEccCCcCccc----CccccCCCCCccEEEccCCccccc
Q 037558 244 LSSLGKFKSLIDLQLNENQFTGYIPRSFG-----NLTSLSTLRLSKNELFGS----IPDEIGKMRSLSVLDLNENQFKGV 314 (518)
Q Consensus 244 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~l~~~----~p~~~~~l~~L~~L~l~~n~l~~~ 314 (518)
+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+.+.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 33334445555555555555433222221 133555555555554432 233344445555555555544322
Q ss_pred C-----CccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCccc----CchhhcCCCCccEEecCCCcCccc
Q 037558 315 L-----PPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGY----LPYNICQGGALEIFTVSENHFQGT 385 (518)
Q Consensus 315 ~-----~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~ 385 (518)
. +..+..+ +.|++|++++|.+.+. ++..+..+++|+.|++++|.+.+.
T Consensus 243 ~~~~l~~~~~~~~-----------------------~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 299 (461)
T 1z7x_W 243 GMAELCPGLLHPS-----------------------SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299 (461)
T ss_dssp HHHHHHHHHTSTT-----------------------CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH
T ss_pred HHHHHHHHHhcCC-----------------------CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH
Confidence 1 1111123 4455555555555443 344555566777777777766544
Q ss_pred cChhhhc-----CCCCcEEEcccCccccc----cChhhhCCCCCCEEecccCccccccCcccc-----CCCCCCEEEccC
Q 037558 386 IPTSVRN-----CTSLIRVHLNGNNLTGN----ISEALAIYPNLTFIDLSRNNFYGEISSNWG-----KCPKLDTLNVSM 451 (518)
Q Consensus 386 ~~~~~~~-----l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~L~ls~ 451 (518)
.+..+.. .++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+. ..++|++|++++
T Consensus 300 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 379 (461)
T 1z7x_W 300 GARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCC
Confidence 3333322 25788888888877755 455666778888888888877655333332 256888888888
Q ss_pred Ccccc----CccccccCCCCCCEEeCcCCcCcccCCcccc-----CCCCCCEEECcCCccccccCc
Q 037558 452 NNITG----GIPREIGNSSQLQALDLSLNHIVGEIPKELG-----KLNSLTKLILRGNQRAVTLSF 508 (518)
Q Consensus 452 n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~~~~~ip~ 508 (518)
|.+++ .+|..+..+++|++|++++|++.+.....+. ....|+.|++.++.+....++
T Consensus 380 n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~ 445 (461)
T 1z7x_W 380 CDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED 445 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred CCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHH
Confidence 88875 6677777788888888888887754332222 234677888877777655544
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=6e-31 Score=256.73 Aligned_cols=289 Identities=19% Similarity=0.251 Sum_probs=156.9
Q ss_pred CCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcc
Q 037558 156 SMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLY 235 (518)
Q Consensus 156 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 235 (518)
++++++++++.+. .+|..+. +++++|++++|.+++..+..+.++++|++|++++|.+++..|
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------------- 93 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP--------------- 93 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT---------------
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCH---------------
Confidence 4555555555554 3343332 345555555555544444444444445555444444444444
Q ss_pred cCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccc--
Q 037558 236 GNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKG-- 313 (518)
Q Consensus 236 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~-- 313 (518)
..+..+++|++|++++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 94 ---------~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 161 (330)
T 1xku_A 94 ---------GAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 161 (330)
T ss_dssp ---------TTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG
T ss_pred ---------HHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC
Confidence 44444444445555444444 2233222 456666666666665555556666666666666666642
Q ss_pred cCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcC
Q 037558 314 VLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNC 393 (518)
Q Consensus 314 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 393 (518)
..+..+..+++|++|++++|.+++ +|..+. + +|+.|++++|.+.+..+..+..+
T Consensus 162 ~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~-~------------------------~L~~L~l~~n~l~~~~~~~~~~l 215 (330)
T 1xku_A 162 IENGAFQGMKKLSYIRIADTNITT-IPQGLP-P------------------------SLTELHLDGNKITKVDAASLKGL 215 (330)
T ss_dssp BCTTGGGGCTTCCEEECCSSCCCS-CCSSCC-T------------------------TCSEEECTTSCCCEECTGGGTTC
T ss_pred cChhhccCCCCcCEEECCCCcccc-CCcccc-c------------------------cCCEEECCCCcCCccCHHHhcCC
Confidence 445556666667777766666652 332221 3 34444444444444444455555
Q ss_pred CCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccC------CCC
Q 037558 394 TSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGN------SSQ 467 (518)
Q Consensus 394 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~------l~~ 467 (518)
++|++|++++|++++..+..+..+++|++|++++|++. .+|..+..+++|++|++++|++++..+..|.. .+.
T Consensus 216 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~ 294 (330)
T 1xku_A 216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 294 (330)
T ss_dssp TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCC
T ss_pred CCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccccccc
Confidence 55666666666665555555566666666666666665 45555666666666666666666544444432 356
Q ss_pred CCEEeCcCCcCcc--cCCccccCCCCCCEEECcCCc
Q 037558 468 LQALDLSLNHIVG--EIPKELGKLNSLTKLILRGNQ 501 (518)
Q Consensus 468 L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~ 501 (518)
|+.|++++|++.. ..|..+..++.++.+++++|+
T Consensus 295 l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 295 YSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccceEeecCcccccccCccccccccceeEEEecccC
Confidence 7777777777653 455667777778888887774
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=3e-31 Score=258.98 Aligned_cols=288 Identities=20% Similarity=0.279 Sum_probs=151.8
Q ss_pred CCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcc
Q 037558 156 SMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLY 235 (518)
Q Consensus 156 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 235 (518)
++++++++++.+. .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+++..|..++.+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4556666655554 4444332 355555555555554444445555555555555555444444444444444444444
Q ss_pred cCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCccc--c
Q 037558 236 GNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFK--G 313 (518)
Q Consensus 236 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~--~ 313 (518)
+|.++ .+|..+. ++|++|++++|++.+..+..+..+++|++|++++|.+. +
T Consensus 111 ------------------------~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 163 (332)
T 2ft3_A 111 ------------------------KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG 163 (332)
T ss_dssp ------------------------SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG
T ss_pred ------------------------CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCC
Confidence 44444 2232222 45555666665555444444555666666666666654 2
Q ss_pred cCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcC
Q 037558 314 VLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNC 393 (518)
Q Consensus 314 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 393 (518)
..+..+..+ +|++|++++|.+++ +|..+. +.|+ .|++++|.+.+..+..+..+
T Consensus 164 ~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~-~~L~------------------------~L~l~~n~i~~~~~~~l~~l 216 (332)
T 2ft3_A 164 FEPGAFDGL-KLNYLRISEAKLTG-IPKDLP-ETLN------------------------ELHLDHNKIQAIELEDLLRY 216 (332)
T ss_dssp SCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC-SSCS------------------------CCBCCSSCCCCCCTTSSTTC
T ss_pred CCcccccCC-ccCEEECcCCCCCc-cCcccc-CCCC------------------------EEECCCCcCCccCHHHhcCC
Confidence 444455555 66666666666653 332221 2344 44444444444444444555
Q ss_pred CCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccC------CCC
Q 037558 394 TSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGN------SSQ 467 (518)
Q Consensus 394 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~------l~~ 467 (518)
++|++|++++|++++..+..+..+++|++|++++|++. .+|..+..+++|++|++++|++++..+..|.. ...
T Consensus 217 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 295 (332)
T 2ft3_A 217 SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAY 295 (332)
T ss_dssp TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCC
T ss_pred CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccccccccccc
Confidence 55555555555555554555555555666666666555 44555555666666666666665444444432 355
Q ss_pred CCEEeCcCCcCc--ccCCccccCCCCCCEEECcCCc
Q 037558 468 LQALDLSLNHIV--GEIPKELGKLNSLTKLILRGNQ 501 (518)
Q Consensus 468 L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~l~~n~ 501 (518)
|+.|++++|++. +..|..+..+++|+.+++++|+
T Consensus 296 l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 677777777765 5566667777777777777764
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=2.2e-31 Score=259.96 Aligned_cols=282 Identities=21% Similarity=0.255 Sum_probs=206.5
Q ss_pred CCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEcc
Q 037558 204 SIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLS 283 (518)
Q Consensus 204 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 283 (518)
+++.++++++.++ .+|..+ .+++++|++++|.+.+..+..+.++++|++|++++|++++..|..+..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4556666666555 344433 2466666666666666555566666677777777776666666666677777777777
Q ss_pred CCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCc
Q 037558 284 KNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLP 363 (518)
Q Consensus 284 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~ 363 (518)
+|+++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.++. .+..+
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~---------------------~~~~~ 166 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN---------------------SGFEP 166 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBG---------------------GGSCT
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCcccc---------------------CCCCc
Confidence 77666 4444433 567777777777665444456666666666666665542 11233
Q ss_pred hhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCC
Q 037558 364 YNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPK 443 (518)
Q Consensus 364 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 443 (518)
..+..+ +|+.|++++|.+++ +|..+. ++|++|++++|++++..+..+..+++|++|++++|++.+..+..+..+++
T Consensus 167 ~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 242 (332)
T 2ft3_A 167 GAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT 242 (332)
T ss_dssp TSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTT
T ss_pred ccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCC
Confidence 344444 67777788887774 555443 78999999999999988889999999999999999999888888999999
Q ss_pred CCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCccccC------CCCCCEEECcCCccc--cccCccCccCCC
Q 037558 444 LDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGK------LNSLTKLILRGNQRA--VTLSFINKVCSS 515 (518)
Q Consensus 444 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~l~~n~~~--~~ip~~l~~l~~ 515 (518)
|++|++++|++. .+|..+..+++|++|++++|++.+..+..+.. .+.|+.|++++|++. +..|..+..++.
T Consensus 243 L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~ 321 (332)
T 2ft3_A 243 LRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTD 321 (332)
T ss_dssp CCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCC
T ss_pred CCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccch
Confidence 999999999999 78888999999999999999999877776654 467999999999987 555667777777
Q ss_pred CC
Q 037558 516 LE 517 (518)
Q Consensus 516 L~ 517 (518)
|+
T Consensus 322 L~ 323 (332)
T 2ft3_A 322 RL 323 (332)
T ss_dssp ST
T ss_pred hh
Confidence 65
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=2.3e-35 Score=301.86 Aligned_cols=355 Identities=20% Similarity=0.145 Sum_probs=217.2
Q ss_pred CCCCEEECCCCCCCcCCCcc-CCCCCCCcEEEccCCCCCc----cCCcCCcCCCCCCEEEccCccccccCCcccc-CCC-
Q 037558 131 SHLKFLFIDTNKLDGSIPPE-VGQLSSMEVFFLCSNYLNG----SVPPSLGNLSHISLLFIYDNLFSGFIPSDIG-NSK- 203 (518)
Q Consensus 131 ~~L~~L~l~~n~~~~~~p~~-l~~l~~L~~L~L~~n~~~~----~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~~~- 203 (518)
++|++|++++|.++...... +..+++|++|++++|.+.+ .++..+..+++|++|++++|.+.+..+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45667777777665332222 4556666777776666653 2344455566666666666665543222221 222
Q ss_pred ---CCcEEEcccCcCCC----CcchhccCCCCCcEEEcccCcCCcccccccc-----CCCCCCEeeCcCCCCccCC----
Q 037558 204 ---SIFNLDLSSNQFSG----PIPLFFGNLSNLKSLYLYGNSLSSPILSSLG-----KFKSLIDLQLNENQFTGYI---- 267 (518)
Q Consensus 204 ---~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~~~~~~---- 267 (518)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|++++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 46666666665553 2344555555666666665555432222221 1234555555555544321
Q ss_pred cccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccC-cCCCCCCeeeccccccccc----CCcc
Q 037558 268 PRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSI-SNLTNLKELALLYNHLSGS----IPPS 342 (518)
Q Consensus 268 ~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~n~l~~~----~p~~ 342 (518)
+..+..+++|++|++++|.+++..+..+.. .+ ...++|++|++++|.+++. ++..
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~--------------------~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 222 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQ--------------------GLKDSPCQLEALKLESCGVTSDNCRDLCGI 222 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHH--------------------HHHHSCCCCCEEECTTSCCBTTHHHHHHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHH--------------------HHhcCCCCceEEEccCCCCcHHHHHHHHHH
Confidence 223333445555555555443322222211 00 0133455555555544431 1222
Q ss_pred ccc-ccCcEEEccCccCcccC-----chhhcCCCCccEEecCCCcCccc----cChhhhcCCCCcEEEcccCccccccCh
Q 037558 343 LGN-LILRELLLSGNHFAGYL-----PYNICQGGALEIFTVSENHFQGT----IPTSVRNCTSLIRVHLNGNNLTGNISE 412 (518)
Q Consensus 343 ~~~-~~L~~L~l~~n~~~~~~-----~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~ 412 (518)
+.. ++|++|++++|.+.+.. +..+..+++|+.|++++|.+++. ++..+..+++|++|++++|.+++..+.
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 222 45555666655554332 22233578999999999999864 577778899999999999999866544
Q ss_pred hhhC-----CCCCCEEecccCccccc----cCccccCCCCCCEEEccCCccccCccccccC-----CCCCCEEeCcCCcC
Q 037558 413 ALAI-----YPNLTFIDLSRNNFYGE----ISSNWGKCPKLDTLNVSMNNITGGIPREIGN-----SSQLQALDLSLNHI 478 (518)
Q Consensus 413 ~l~~-----l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l 478 (518)
.+.. .++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+.. .++|++|++++|++
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 4432 37999999999999865 4566778899999999999998655554432 67999999999999
Q ss_pred cc----cCCccccCCCCCCEEECcCCccccc
Q 037558 479 VG----EIPKELGKLNSLTKLILRGNQRAVT 505 (518)
Q Consensus 479 ~~----~~~~~l~~l~~L~~L~l~~n~~~~~ 505 (518)
.+ .+|..+..+++|++|++++|++.+.
T Consensus 383 ~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 383 SDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp CHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred ChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 86 7888889999999999999999765
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=1.5e-30 Score=253.93 Aligned_cols=220 Identities=21% Similarity=0.317 Sum_probs=130.2
Q ss_pred CCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEcc
Q 037558 108 RLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIY 187 (518)
Q Consensus 108 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~ 187 (518)
+++.++++++.+. .+|..+. +++++|++++|.+++..+..++++++|++|++++|.+.+..|..+.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 5777788777664 3454332 567777777777776555567777777777777777776667777777777777777
Q ss_pred CccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCc--cccccccCCCCCCEeeCcCCCCcc
Q 037558 188 DNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSS--PILSSLGKFKSLIDLQLNENQFTG 265 (518)
Q Consensus 188 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~~~~ 265 (518)
+|.++. +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++.
T Consensus 109 ~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 777663 343332 567777777776665555566666666666666666543 344455555555555555555552
Q ss_pred CCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeeccccccc
Q 037558 266 YIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLS 336 (518)
Q Consensus 266 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 336 (518)
+|..+. ++|++|++++|++++..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++
T Consensus 186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence 233222 44555555555554444444555555555555555554443334444444444444444433
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=7.1e-33 Score=292.44 Aligned_cols=402 Identities=15% Similarity=0.068 Sum_probs=264.3
Q ss_pred cCCCCCCCcEEeCCCCCCc---ccCCcccc------------CCCCCCEEECCCCCCCcCCCccCCC-CCC-CcEEEccC
Q 037558 102 SFSSFPRLAYLDLTGSGLF---GTIPPEVG------------LLSHLKFLFIDTNKLDGSIPPEVGQ-LSS-MEVFFLCS 164 (518)
Q Consensus 102 ~l~~l~~L~~L~L~~~~~~---~~~~~~~~------------~l~~L~~L~l~~n~~~~~~p~~l~~-l~~-L~~L~L~~ 164 (518)
.+..+++|++|+++++... +.+|..++ .+++|++|++++|.+++..+..+.. +++ |++|++++
T Consensus 68 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~ 147 (592)
T 3ogk_B 68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDK 147 (592)
T ss_dssp HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEES
T ss_pred HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcC
Confidence 4557788888888775321 22332222 6788888888888777655555554 334 88888888
Q ss_pred CCC-Cc-cCCcCCcCCCCCCEEEccCcccccc----CCccccCCCCCcEEEcccCcCCC----CcchhccCCCCCcEEEc
Q 037558 165 NYL-NG-SVPPSLGNLSHISLLFIYDNLFSGF----IPSDIGNSKSIFNLDLSSNQFSG----PIPLFFGNLSNLKSLYL 234 (518)
Q Consensus 165 n~~-~~-~~p~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l 234 (518)
|.. .. .++....++++|++|++++|.+++. ++.....+++|++|++++|.+++ .++..+..+++|++|++
T Consensus 148 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L 227 (592)
T 3ogk_B 148 CSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKV 227 (592)
T ss_dssp CEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEEC
T ss_pred CCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEec
Confidence 762 11 1222234678888888888887655 22334567888888888888763 33444567788888888
Q ss_pred ccCcCCccccccccCCCCCCEeeCcCCCCc---cCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcc
Q 037558 235 YGNSLSSPILSSLGKFKSLIDLQLNENQFT---GYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQF 311 (518)
Q Consensus 235 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~---~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 311 (518)
++|.+.+ ++..+..+++|++|+++..... ...+..+..+++|+.++++++.. +.+|..+..+++|++|++++|.+
T Consensus 228 ~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l 305 (592)
T 3ogk_B 228 GDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALL 305 (592)
T ss_dssp SSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCC
T ss_pred cCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcC
Confidence 8887776 5677778888888888753322 23334566777888888877533 35666677788888888888886
Q ss_pred cccCC-ccCcCCCCCCeeecccccccccCCccccc-ccCcEEEccC-----------ccCccc-CchhhcCCCCccEEec
Q 037558 312 KGVLP-PSISNLTNLKELALLYNHLSGSIPPSLGN-LILRELLLSG-----------NHFAGY-LPYNICQGGALEIFTV 377 (518)
Q Consensus 312 ~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~-----------n~~~~~-~~~~~~~~~~L~~L~l 377 (518)
.+... ..+..+++|++|+++++...+.++..... ++|++|++++ +.+++. ++.....+++|+.|++
T Consensus 306 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l 385 (592)
T 3ogk_B 306 ETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV 385 (592)
T ss_dssp CHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE
T ss_pred CHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe
Confidence 54433 23567788888888733222222222222 6788888883 444433 2222445778888888
Q ss_pred CCCcCccccChhhhc-CCCCcEEEcc----cCccccc-----cChhhhCCCCCCEEecccCc--cccccCccc-cCCCCC
Q 037558 378 SENHFQGTIPTSVRN-CTSLIRVHLN----GNNLTGN-----ISEALAIYPNLTFIDLSRNN--FYGEISSNW-GKCPKL 444 (518)
Q Consensus 378 ~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~-----~~~~l~~l~~L~~L~L~~n~--l~~~~~~~~-~~~~~L 444 (518)
+.+.+++..+..+.. +++|++|+++ .+.+++. ++..+..+++|+.|+++.|. +++..+..+ ..+++|
T Consensus 386 ~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L 465 (592)
T 3ogk_B 386 YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNV 465 (592)
T ss_dssp EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTC
T ss_pred ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccc
Confidence 777777766666654 7888888886 5566653 33446668888888887543 554433333 347788
Q ss_pred CEEEccCCcccc-CccccccCCCCCCEEeCcCCcCcccC-CccccCCCCCCEEECcCCccccc
Q 037558 445 DTLNVSMNNITG-GIPREIGNSSQLQALDLSLNHIVGEI-PKELGKLNSLTKLILRGNQRAVT 505 (518)
Q Consensus 445 ~~L~ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~~~~~ 505 (518)
++|++++|++++ .++..+..+++|++|++++|++++.. +..+..+++|++|++++|++.+.
T Consensus 466 ~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 466 RWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred eEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 888888888775 34455577888888888888876543 33345688888888888887654
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=1.8e-32 Score=289.41 Aligned_cols=415 Identities=13% Similarity=0.062 Sum_probs=306.6
Q ss_pred CCEEEEEcCCCCCc---cccCCccCC------------CCCCCcEEeCCCCCCcccCCccccC-CC-CCCEEECCCCC-C
Q 037558 82 GRVINISLRNTGLS---GTLHGFSFS------------SFPRLAYLDLTGSGLFGTIPPEVGL-LS-HLKFLFIDTNK-L 143 (518)
Q Consensus 82 ~~v~~l~l~~~~~~---~~~~~~~l~------------~l~~L~~L~L~~~~~~~~~~~~~~~-l~-~L~~L~l~~n~-~ 143 (518)
.++++++++++... +.+|. .+. .+++|++|+|++|.+.+..+..+.. ++ +|++|++++|. +
T Consensus 73 ~~L~~L~L~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~ 151 (592)
T 3ogk_B 73 PNLRSLKLKGKPRAAMFNLIPE-NWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF 151 (592)
T ss_dssp TTCSEEEEECSCGGGGGTCSCT-TSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE
T ss_pred CCCeEEEecCCcchhhcccccc-cccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc
Confidence 46888998775431 22221 222 7899999999999887766666655 34 49999999987 2
Q ss_pred Cc-CCCccCCCCCCCcEEEccCCCCCcc----CCcCCcCCCCCCEEEccCccccc----cCCccccCCCCCcEEEcccCc
Q 037558 144 DG-SIPPEVGQLSSMEVFFLCSNYLNGS----VPPSLGNLSHISLLFIYDNLFSG----FIPSDIGNSKSIFNLDLSSNQ 214 (518)
Q Consensus 144 ~~-~~p~~l~~l~~L~~L~L~~n~~~~~----~p~~l~~l~~L~~L~l~~n~~~~----~~~~~~~~~~~L~~L~l~~n~ 214 (518)
.. .++....++++|++|++++|.+.+. ++..+..+++|++|++++|.+++ .++..+.++++|++|++++|.
T Consensus 152 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 152 TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231 (592)
T ss_dssp EHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred CHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence 21 2233345789999999999988654 33345678999999999999873 344556789999999999999
Q ss_pred CCCCcchhccCCCCCcEEEcccCcCC---ccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccC
Q 037558 215 FSGPIPLFFGNLSNLKSLYLYGNSLS---SPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSI 291 (518)
Q Consensus 215 ~~~~~~~~l~~l~~L~~L~l~~n~~~---~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 291 (518)
+.+ ++..+..+++|++|+++..... ...+..+..+++|+.|+++++.. +.+|..+..+++|++|++++|.+++..
T Consensus 232 ~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~ 309 (592)
T 3ogk_B 232 ILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETED 309 (592)
T ss_dssp GGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHH
T ss_pred HHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHH
Confidence 885 6788899999999999864332 23446678889999999988643 357777888999999999999876543
Q ss_pred c-cccCCCCCccEEEccCCcccccCCccCcCCCCCCeeeccc-----------ccccccCCcc-cc-cccCcEEEccCcc
Q 037558 292 P-DEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLY-----------NHLSGSIPPS-LG-NLILRELLLSGNH 357 (518)
Q Consensus 292 p-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-----------n~l~~~~p~~-~~-~~~L~~L~l~~n~ 357 (518)
. ..+..+++|++|+++++...+.++.....+++|++|++++ +.+++..... .. .++|++|+++.|.
T Consensus 310 ~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 389 (592)
T 3ogk_B 310 HCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSD 389 (592)
T ss_dssp HHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESC
T ss_pred HHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCC
Confidence 3 3467899999999994433333344456789999999994 4554322222 12 2789999999899
Q ss_pred CcccCchhhcC-CCCccEEecC----CCcCccc-----cChhhhcCCCCcEEEcccCc--cccccChhhh-CCCCCCEEe
Q 037558 358 FAGYLPYNICQ-GGALEIFTVS----ENHFQGT-----IPTSVRNCTSLIRVHLNGNN--LTGNISEALA-IYPNLTFID 424 (518)
Q Consensus 358 ~~~~~~~~~~~-~~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~L~L~~n~--l~~~~~~~l~-~l~~L~~L~ 424 (518)
+++..+..+.. +++|+.|+++ .|.+++. ++..+..+++|++|+++.|. +++.....+. .+++|++|+
T Consensus 390 l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~ 469 (592)
T 3ogk_B 390 ITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWML 469 (592)
T ss_dssp CCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEE
T ss_pred ccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEee
Confidence 98877766665 8899999996 5677653 34446779999999998654 6665555554 489999999
Q ss_pred cccCccccc-cCccccCCCCCCEEEccCCccccC-ccccccCCCCCCEEeCcCCcCcccCCcccc-CCCCCCEEECcC
Q 037558 425 LSRNNFYGE-ISSNWGKCPKLDTLNVSMNNITGG-IPREIGNSSQLQALDLSLNHIVGEIPKELG-KLNSLTKLILRG 499 (518)
Q Consensus 425 L~~n~l~~~-~~~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~ 499 (518)
+++|++++. ++..+..+++|++|++++|.+++. ++.....+++|++|++++|++++.....+. .++.+....+..
T Consensus 470 L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 470 LGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp ECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred ccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 999999864 455567899999999999998754 444456789999999999999876555453 567776554443
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2.7e-29 Score=242.35 Aligned_cols=254 Identities=21% Similarity=0.240 Sum_probs=196.6
Q ss_pred CCCccCceeeCCCCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCc--C
Q 037558 69 SPCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDG--S 146 (518)
Q Consensus 69 ~~c~w~g~~c~~~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~ 146 (518)
..|.|.++.|...+ +. .+|. . -.+++++|++++|.+....+..+..+++|++|++++|.++. .
T Consensus 5 C~C~~~~l~c~~~~-----------l~-~ip~-~--~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~ 69 (306)
T 2z66_A 5 CSCSGTEIRCNSKG-----------LT-SVPT-G--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGC 69 (306)
T ss_dssp CEEETTEEECCSSC-----------CS-SCCS-C--CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEE
T ss_pred CeeCCCEEEcCCCC-----------cc-cCCC-C--CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccC
Confidence 34788888886422 22 2222 1 23688999999998875444557888999999999988873 2
Q ss_pred CCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCC-ccccCCCCCcEEEcccCcCCCCcchhccC
Q 037558 147 IPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIP-SDIGNSKSIFNLDLSSNQFSGPIPLFFGN 225 (518)
Q Consensus 147 ~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~ 225 (518)
.|..+..+++|++|++++|.+. .+|..+.++++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..
T Consensus 70 ~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 148 (306)
T 2z66_A 70 CSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 148 (306)
T ss_dssp EEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT
T ss_pred cccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc
Confidence 3566667888999999988887 566778888889999998888876654 56788888888888888888777777888
Q ss_pred CCCCcEEEcccCcCCc-cccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEE
Q 037558 226 LSNLKSLYLYGNSLSS-PILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVL 304 (518)
Q Consensus 226 l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L 304 (518)
+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|
T Consensus 149 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 228 (306)
T 2z66_A 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228 (306)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence 8888888888888876 567778888888888888888887777778888888888888888876666677778888888
Q ss_pred EccCCcccccCCccCcCCC-CCCeeeccccccccc
Q 037558 305 DLNENQFKGVLPPSISNLT-NLKELALLYNHLSGS 338 (518)
Q Consensus 305 ~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~ 338 (518)
++++|.+.+..+..+..++ +|++|++++|.+++.
T Consensus 229 ~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp ECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred ECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 8888888877777777774 788888888877654
No 53
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=6.8e-29 Score=241.37 Aligned_cols=235 Identities=23% Similarity=0.260 Sum_probs=191.4
Q ss_pred CCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEE
Q 037558 105 SFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLL 184 (518)
Q Consensus 105 ~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L 184 (518)
..+++++|++++|.+. .+|..+..+++|++|++++|.++ .+|..++++++|++|++++|.+. .+|..+.++++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3467777777777775 56666777777777777777777 67777777777777777777776 666667777777777
Q ss_pred EccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCc
Q 037558 185 FIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFT 264 (518)
Q Consensus 185 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 264 (518)
++++|.+.+.+|..+.. . ..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.
T Consensus 156 ~L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 77776666665554332 0 11223566999999999999998 58888999999999999999999
Q ss_pred cCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCcccc
Q 037558 265 GYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLG 344 (518)
Q Consensus 265 ~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~ 344 (518)
+ +|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|..+.
T Consensus 220 ~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 220 A-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp C-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred c-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 5 666799999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred c-ccCcEEEccCccCc
Q 037558 345 N-LILRELLLSGNHFA 359 (518)
Q Consensus 345 ~-~~L~~L~l~~n~~~ 359 (518)
. ++++.+++..+.+.
T Consensus 299 ~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 299 QLPANCIILVPPHLQA 314 (328)
T ss_dssp GSCTTCEEECCGGGSC
T ss_pred hccCceEEeCCHHHHH
Confidence 7 88999999877654
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=8e-29 Score=238.99 Aligned_cols=282 Identities=20% Similarity=0.203 Sum_probs=177.2
Q ss_pred cEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccC--CcccccCCCCCcEEEcc
Q 037558 206 FNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGY--IPRSFGNLTSLSTLRLS 283 (518)
Q Consensus 206 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~l~ 283 (518)
+.++.+++.++ .+|..+ .++|++|++++|.++...+..+.++++|++|++++|.++.. .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 35566666655 344332 24566666666666654444456666666666666665522 23444455666666666
Q ss_pred CCcCcccCccccCCCCCccEEEccCCcccccCC-ccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccC
Q 037558 284 KNELFGSIPDEIGKMRSLSVLDLNENQFKGVLP-PSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYL 362 (518)
Q Consensus 284 ~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~ 362 (518)
+|.+. .+|..+..+++|++|++++|.+.+..+ ..+..+++|++|+++ +|.+.+..
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~-----------------------~n~l~~~~ 142 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS-----------------------HTHTRVAF 142 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECT-----------------------TSCCEECS
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECC-----------------------CCcCCccc
Confidence 66554 344445555566666666555553322 234444455544444 44444444
Q ss_pred chhhcCCCCccEEecCCCcCcc-ccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCC
Q 037558 363 PYNICQGGALEIFTVSENHFQG-TIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKC 441 (518)
Q Consensus 363 ~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 441 (518)
+..+..+++|+.|++++|.+.+ ..|..+..+++|++|++++|++++..+..+..+++|++|++++|++.+..+..+..+
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 222 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC
T ss_pred hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc
Confidence 5555566677777777777665 466677777888888888888887777777788888888888888876666667778
Q ss_pred CCCCEEEccCCccccCccccccCCC-CCCEEeCcCCcCcccCC--ccccCCCCCCEEECcCCccccccCccCccCC
Q 037558 442 PKLDTLNVSMNNITGGIPREIGNSS-QLQALDLSLNHIVGEIP--KELGKLNSLTKLILRGNQRAVTLSFINKVCS 514 (518)
Q Consensus 442 ~~L~~L~ls~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~--~~l~~l~~L~~L~l~~n~~~~~ip~~l~~l~ 514 (518)
++|++|++++|++.+..|..+..++ +|++|++++|++.+.-. .....+...+.+.+..+.+.+..|..+.+.+
T Consensus 223 ~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~ 298 (306)
T 2z66_A 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP 298 (306)
T ss_dssp TTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCB
T ss_pred ccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCce
Confidence 8888888888888877777777774 78888888888765321 1122233444556677778888887776543
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=242.17 Aligned_cols=279 Identities=19% Similarity=0.211 Sum_probs=135.1
Q ss_pred CCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEcc
Q 037558 108 RLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIY 187 (518)
Q Consensus 108 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~ 187 (518)
.....+++++.+. .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.+..|..+.++++|++|+++
T Consensus 32 ~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 32 RNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp TTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 3334555555543 2333322 355555555555553333345555555555555555544444444445555555555
Q ss_pred CccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCcccc-ccccCCCCCCEeeCcCC-CCcc
Q 037558 188 DNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPIL-SSLGKFKSLIDLQLNEN-QFTG 265 (518)
Q Consensus 188 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n-~~~~ 265 (518)
+|.+++.. +..++.+++|++|++++|.+++... ..+..+++|++|++++| .+.+
T Consensus 109 ~n~l~~~~------------------------~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~ 164 (353)
T 2z80_A 109 YNYLSNLS------------------------SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK 164 (353)
T ss_dssp SSCCSSCC------------------------HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred CCcCCcCC------------------------HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc
Confidence 55444333 3334444455555555444443222 24444555555555554 2333
Q ss_pred CCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCcccc-
Q 037558 266 YIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLG- 344 (518)
Q Consensus 266 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~- 344 (518)
..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.......+..+++|+.|++++|.+++..+..+.
T Consensus 165 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 244 (353)
T 2z80_A 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244 (353)
T ss_dssp ECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC----
T ss_pred cCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc
Confidence 3344455555555555555555555555555555666666666555422212233355566666665555543222111
Q ss_pred ---cccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCC
Q 037558 345 ---NLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLT 421 (518)
Q Consensus 345 ---~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 421 (518)
...++.++++++.+.+. .+. .+|..+..+++|++|++++|+++...+..+..+++|+
T Consensus 245 ~~~~~~l~~l~L~~~~l~~~-------------------~l~-~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~ 304 (353)
T 2z80_A 245 GETNSLIKKFTFRNVKITDE-------------------SLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQ 304 (353)
T ss_dssp --CCCCCCEEEEESCBCCHH-------------------HHH-HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccccchhhccccccccccCc-------------------chh-hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCC
Confidence 12334444444333221 111 2445556666666666666666643333346666666
Q ss_pred EEecccCccccc
Q 037558 422 FIDLSRNNFYGE 433 (518)
Q Consensus 422 ~L~L~~n~l~~~ 433 (518)
+|++++|++.+.
T Consensus 305 ~L~L~~N~~~~~ 316 (353)
T 2z80_A 305 KIWLHTNPWDCS 316 (353)
T ss_dssp EEECCSSCBCCC
T ss_pred EEEeeCCCccCc
Confidence 666666666543
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.3e-28 Score=242.41 Aligned_cols=279 Identities=21% Similarity=0.195 Sum_probs=166.3
Q ss_pred CCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEE
Q 037558 201 NSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTL 280 (518)
Q Consensus 201 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 280 (518)
.++.....+.+++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|++++..+..+.++++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 3455556777777777 4555443 478888888888877666677788888888888888877666777778888888
Q ss_pred EccCCcCcccCccccCCCCCccEEEccCCcccccCC-ccCcCCCCCCeeeccccc-ccccCCccccc-ccCcEEEccCcc
Q 037558 281 RLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLP-PSISNLTNLKELALLYNH-LSGSIPPSLGN-LILRELLLSGNH 357 (518)
Q Consensus 281 ~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~-l~~~~p~~~~~-~~L~~L~l~~n~ 357 (518)
++++|++++..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|. +.+..+..+.. ++|++|++++|.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 888887775444557777888888888887774332 356677777777777763 44333333332 445555555555
Q ss_pred CcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCcc
Q 037558 358 FAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSN 437 (518)
Q Consensus 358 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 437 (518)
+.+..|..+..+++|+.| ++++|+++......+..+++|++|++++|.+.+..+..
T Consensus 186 l~~~~~~~l~~l~~L~~L------------------------~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 241 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHL------------------------ILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE 241 (353)
T ss_dssp CCEECTTTTTTCSEEEEE------------------------EEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-
T ss_pred cCccCHHHHhccccCCee------------------------cCCCCccccchhhhhhhcccccEEECCCCccccccccc
Confidence 554444444444444444 44444444333233333445555555555544332221
Q ss_pred c---cCCCCCCEEEccCCcccc----CccccccCCCCCCEEeCcCCcCcccCCcc-ccCCCCCCEEECcCCccccccC
Q 037558 438 W---GKCPKLDTLNVSMNNITG----GIPREIGNSSQLQALDLSLNHIVGEIPKE-LGKLNSLTKLILRGNQRAVTLS 507 (518)
Q Consensus 438 ~---~~~~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~ip 507 (518)
+ ...+.++.++++++.+.+ .+|..+..+++|++|++++|++. .+|.. +..+++|++|++++|++.+..|
T Consensus 242 l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 242 LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp -----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 1 224455555665555543 34555566666666666666665 33433 3566666666666666665544
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=4e-28 Score=231.54 Aligned_cols=224 Identities=23% Similarity=0.258 Sum_probs=153.7
Q ss_pred EEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccC
Q 037558 85 INISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCS 164 (518)
Q Consensus 85 ~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~ 164 (518)
+.++.++.++.. +|. .-.++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+.++++|++|++++
T Consensus 14 ~~~~c~~~~l~~-ip~---~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPV---GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSS-CCT---TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCccc-CCc---CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 455556555543 222 2346788888888888776667788888888888888888766677788888888888888
Q ss_pred CC-CCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccc
Q 037558 165 NY-LNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPI 243 (518)
Q Consensus 165 n~-~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 243 (518)
|. +....|..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..++.+++|++|++++|.+++..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 86 65555667777778888888877777766777777777777777777777655555666777777777777666655
Q ss_pred cccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCccc
Q 037558 244 LSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFK 312 (518)
Q Consensus 244 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 312 (518)
+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 555666666666666666666555566666666666666666666544445555666666666666555
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.1e-27 Score=228.53 Aligned_cols=256 Identities=20% Similarity=0.236 Sum_probs=202.4
Q ss_pred cEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCc
Q 037558 110 AYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDN 189 (518)
Q Consensus 110 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n 189 (518)
++++.+++.+. .+|..+ .++|++|++++|.+++..+..+.++++|++|++++|.+.+..|..+.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 56788777774 345433 468899999999888766677888899999999999888777888888899999999988
Q ss_pred c-ccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCc
Q 037558 190 L-FSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIP 268 (518)
Q Consensus 190 ~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 268 (518)
. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 7 776667888888999999999998887778888888899999999998888667778888889999999988887666
Q ss_pred ccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCcccccccC
Q 037558 269 RSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLIL 348 (518)
Q Consensus 269 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L 348 (518)
..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+.......+
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l 250 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWL 250 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHH
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHH
Confidence 66888889999999999888877888888889999999999888766566888889999999998887544432222334
Q ss_pred cEEEccCccCcccCchhhcC
Q 037558 349 RELLLSGNHFAGYLPYNICQ 368 (518)
Q Consensus 349 ~~L~l~~n~~~~~~~~~~~~ 368 (518)
+.+..+.+.+....|..+.+
T Consensus 251 ~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 251 QKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp HHCCSEECCCBEEESGGGTT
T ss_pred HhcccccCccccCCchHhCC
Confidence 45556666666666665543
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=5.9e-27 Score=238.45 Aligned_cols=228 Identities=22% Similarity=0.242 Sum_probs=198.0
Q ss_pred CCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEc
Q 037558 107 PRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFI 186 (518)
Q Consensus 107 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l 186 (518)
+++++|+|++|.+.+..+..|..+++|++|++++|.+++..|..|.++++|++|++++|.+.+..+..+.++++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 68999999999998888889999999999999999999878888999999999999999998666667889999999999
Q ss_pred cCccccccCCccccCCCCCcEEEcccCc-CCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCcc
Q 037558 187 YDNLFSGFIPSDIGNSKSIFNLDLSSNQ-FSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTG 265 (518)
Q Consensus 187 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 265 (518)
++|.+....+..+.++++|++|++++|. +....+..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCcc
Confidence 9999998777788999999999999854 4433344688899999999999998863 357888899999999999988
Q ss_pred CCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeeccccccc
Q 037558 266 YIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLS 336 (518)
Q Consensus 266 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 336 (518)
..|..|..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 88888999999999999999998888888888999999999999998766677888889999999988765
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1e-26 Score=235.91 Aligned_cols=228 Identities=21% Similarity=0.215 Sum_probs=193.9
Q ss_pred CCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEc
Q 037558 107 PRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFI 186 (518)
Q Consensus 107 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l 186 (518)
++++.|+|++|.+.+..+..|..+++|++|+|++|.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 68899999999998888888999999999999999998777788999999999999999998666667889999999999
Q ss_pred cCccccccCCccccCCCCCcEEEcccCc-CCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCcc
Q 037558 187 YDNLFSGFIPSDIGNSKSIFNLDLSSNQ-FSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTG 265 (518)
Q Consensus 187 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 265 (518)
++|.+....+..+.++++|++|++++|. +....+..+..+++|++|++++|.++. +| .+..+++|++|++++|.+++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCc
Confidence 9999988777788899999999999854 443344468889999999999998875 33 47788889999999998888
Q ss_pred CCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeeccccccc
Q 037558 266 YIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLS 336 (518)
Q Consensus 266 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 336 (518)
..|..|..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 77888888889999999999888887888888889999999999888766667788888888888888765
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.1e-26 Score=236.55 Aligned_cols=229 Identities=18% Similarity=0.152 Sum_probs=207.7
Q ss_pred CCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEE
Q 037558 82 GRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF 161 (518)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 161 (518)
.+++.++++++.+.+..+. .|.++++|++|+|++|.+.+..+..|..+++|++|+|++|.+++..+..+.++++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQAD-TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHH-HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 4789999999999987666 899999999999999999988889999999999999999999966667799999999999
Q ss_pred ccCCCCCccCCcCCcCCCCCCEEEccCc-cccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCC
Q 037558 162 LCSNYLNGSVPPSLGNLSHISLLFIYDN-LFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLS 240 (518)
Q Consensus 162 L~~n~~~~~~p~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 240 (518)
+++|.+....+..+.++++|++|++++| .+....+..+.++++|++|++++|.+++. | .+..+++|++|++++|.++
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCS
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCc
Confidence 9999999766678999999999999995 45545555789999999999999999854 4 4788999999999999999
Q ss_pred ccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccc
Q 037558 241 SPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKG 313 (518)
Q Consensus 241 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 313 (518)
+..+..|..+++|+.|++++|++.+..+..|..+++|++|++++|++++..+..+..+++|+.|++++|.+..
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 9889999999999999999999999888899999999999999999997777778899999999999998874
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.8e-26 Score=232.60 Aligned_cols=247 Identities=19% Similarity=0.184 Sum_probs=179.1
Q ss_pred CCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEcc
Q 037558 228 NLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLN 307 (518)
Q Consensus 228 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 307 (518)
..+.++..+..++. +|..+. ++++.|++++|++.+..+..|.++++|++|++++|.+.+..+..|..+++|++|+++
T Consensus 44 ~~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 35677777777765 555444 578888888888887777788888888888888888887777788888888888888
Q ss_pred CCcccccCCccCcCCCCCCeeecccccccccCCccccc-ccCcEEEccCccCcccC-chhhcCCCCccEEecCCCcCccc
Q 037558 308 ENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGN-LILRELLLSGNHFAGYL-PYNICQGGALEIFTVSENHFQGT 385 (518)
Q Consensus 308 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~ 385 (518)
+|.+++..+..+..+++|++|++++|.+.+..+..+.. ++|+.|++++|...+.+ +..+..+++|+.|++++|.++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 88888665567888888888888888887555544544 67778888775444333 335666777777777777776 3
Q ss_pred cChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCC
Q 037558 386 IPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNS 465 (518)
Q Consensus 386 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l 465 (518)
+| .+..+++|++|++++|++++..+..+..+++|+.|++++|++.+..+..|..+++|++|++++|++++..+..+..+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 44 35666777777777777776667777777777777777777776666667777777777777777775555566677
Q ss_pred CCCCEEeCcCCcCc
Q 037558 466 SQLQALDLSLNHIV 479 (518)
Q Consensus 466 ~~L~~L~L~~n~l~ 479 (518)
++|+.|+|++|++.
T Consensus 279 ~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 279 HHLERIHLHHNPWN 292 (440)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEcCCCCcc
Confidence 77777777777654
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=4.9e-29 Score=240.96 Aligned_cols=222 Identities=22% Similarity=0.238 Sum_probs=100.7
Q ss_pred CcEEeCCCCCC-cccCCcccc-------CCCCCCEEECCCCCCCcCCCccC--CCCCCCcEEEccCCCCCccCCcCCcCC
Q 037558 109 LAYLDLTGSGL-FGTIPPEVG-------LLSHLKFLFIDTNKLDGSIPPEV--GQLSSMEVFFLCSNYLNGSVPPSLGNL 178 (518)
Q Consensus 109 L~~L~L~~~~~-~~~~~~~~~-------~l~~L~~L~l~~n~~~~~~p~~l--~~l~~L~~L~L~~n~~~~~~p~~l~~l 178 (518)
|++|++++|.+ ...++..+. .+++|++|++++|.+++.+|..+ +.+++|++|++++|.+.+. |..+..+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l 143 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL 143 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence 55555555544 223343333 45555555555555554455443 4555555555555555433 4444433
Q ss_pred -----CCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCC--cchhc--cCCCCCcEEEcccCcCCc--ccc-cc
Q 037558 179 -----SHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGP--IPLFF--GNLSNLKSLYLYGNSLSS--PIL-SS 246 (518)
Q Consensus 179 -----~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~l--~~l~~L~~L~l~~n~~~~--~~~-~~ 246 (518)
++|++|++++|++.+..+..++.+++|++|++++|++.+. .+..+ ..+++|++|++++|.+++ ..+ ..
T Consensus 144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 4555555555555544444555555555555555544332 12222 444555555555554442 111 22
Q ss_pred ccCCCCCCEeeCcCCCCccCCc-ccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCC
Q 037558 247 LGKFKSLIDLQLNENQFTGYIP-RSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNL 325 (518)
Q Consensus 247 l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 325 (518)
+..+++|++|++++|.+++..| ..+..+++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L 298 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQV 298 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEE
T ss_pred HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCC
Confidence 2334444455554444444332 22333444444444444444 3343332 4444444444444432 32 4444444
Q ss_pred Ceeeccccccc
Q 037558 326 KELALLYNHLS 336 (518)
Q Consensus 326 ~~L~l~~n~l~ 336 (518)
++|++++|.++
T Consensus 299 ~~L~L~~N~l~ 309 (312)
T 1wwl_A 299 GNLSLKGNPFL 309 (312)
T ss_dssp EEEECTTCTTT
T ss_pred CEEeccCCCCC
Confidence 44444444443
No 64
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.95 E-value=4.2e-26 Score=215.62 Aligned_cols=215 Identities=21% Similarity=0.291 Sum_probs=131.8
Q ss_pred CCCCccCceeeCCCCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCC
Q 037558 68 ISPCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSI 147 (518)
Q Consensus 68 ~~~c~w~g~~c~~~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 147 (518)
.++|.|.|+.|...+..+.++++++++.. +|. .+. +++++|++++|.+.+..+..|..+++|++|++++|.++...
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~~-ip~-~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSKKLTA-IPS-NIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTSCCSS-CCS-CCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeCCCCCEEEccCCCCCc-cCC-CCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 58999999999766667788888887764 443 222 56777888877776655566777777777777777777433
Q ss_pred CccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCC
Q 037558 148 PPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLS 227 (518)
Q Consensus 148 p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~ 227 (518)
+..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 44456777777777777777654445566666677777666666665555566666666666666666544444455555
Q ss_pred CCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCc
Q 037558 228 NLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNE 286 (518)
Q Consensus 228 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 286 (518)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 55555555555554444444444444444444444443333333344444444444443
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=3.4e-28 Score=235.02 Aligned_cols=244 Identities=22% Similarity=0.256 Sum_probs=170.6
Q ss_pred CCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCc-ccCccccC-------CCCCccEEEccCCcccccCCccC--c
Q 037558 251 KSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELF-GSIPDEIG-------KMRSLSVLDLNENQFKGVLPPSI--S 320 (518)
Q Consensus 251 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~-~~~p~~~~-------~l~~L~~L~l~~n~l~~~~~~~l--~ 320 (518)
++|+.|++++|.+ .+|..+... |+.|++++|.+. ..+|..+. .+++|++|++++|.+.+.+|..+ .
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 3455555555555 334433322 555555555552 23333333 45566666666666665555544 5
Q ss_pred CCCCCCeeecccccccccCCccccc------ccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccc--cChhh--
Q 037558 321 NLTNLKELALLYNHLSGSIPPSLGN------LILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGT--IPTSV-- 390 (518)
Q Consensus 321 ~l~~L~~L~l~~n~l~~~~p~~~~~------~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~-- 390 (518)
.+++|++|++++|.+++. |..+.. ++|++|++++|.+.+..+..+..+++|+.|++++|++.+. .+..+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 566666666666666544 433321 5677777777777777777778888888888888887654 23334
Q ss_pred hcCCCCcEEEcccCcccc---ccChhhhCCCCCCEEecccCccccccC-ccccCCCCCCEEEccCCccccCccccccCCC
Q 037558 391 RNCTSLIRVHLNGNNLTG---NISEALAIYPNLTFIDLSRNNFYGEIS-SNWGKCPKLDTLNVSMNNITGGIPREIGNSS 466 (518)
Q Consensus 391 ~~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~ 466 (518)
..+++|++|++++|++++ .....+..+++|++|++++|++.+..| ..+..+++|++|++++|+++ .+|..+. +
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~ 274 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--A 274 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--S
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--C
Confidence 788999999999999983 223455688999999999999988764 45667899999999999998 7787776 8
Q ss_pred CCCEEeCcCCcCcccCCccccCCCCCCEEECcCCcccc
Q 037558 467 QLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAV 504 (518)
Q Consensus 467 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 504 (518)
+|++|++++|++.+. |. +..+++|++|++++|++.+
T Consensus 275 ~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 275 KLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 999999999999866 65 8899999999999999875
No 66
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=1.4e-30 Score=275.05 Aligned_cols=131 Identities=14% Similarity=0.100 Sum_probs=55.6
Q ss_pred CCCCCCEEECCCCCCCcCCCccCC-CCCCCcEEEccCC-CCCcc-CCcCCcCCCCCCEEEccCccccccCCccc----cC
Q 037558 129 LLSHLKFLFIDTNKLDGSIPPEVG-QLSSMEVFFLCSN-YLNGS-VPPSLGNLSHISLLFIYDNLFSGFIPSDI----GN 201 (518)
Q Consensus 129 ~l~~L~~L~l~~n~~~~~~p~~l~-~l~~L~~L~L~~n-~~~~~-~p~~l~~l~~L~~L~l~~n~~~~~~~~~~----~~ 201 (518)
.+++|++|++++|.+++..+..+. .+++|++|++++| .+... ++..+.++++|++|++++|.+++..+..+ ..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 344555555555554443333332 3455555555555 22211 22222344555555555555443322222 23
Q ss_pred CCCCcEEEcccCc--CCC-CcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCc
Q 037558 202 SKSIFNLDLSSNQ--FSG-PIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLN 259 (518)
Q Consensus 202 ~~~L~~L~l~~n~--~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 259 (518)
+++|++|++++|. +.. .+...+..+++|++|++++|...+.++..+..+++|++|+++
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 4455555555554 110 011112234555555555542111134444444555555543
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=8e-28 Score=232.98 Aligned_cols=266 Identities=17% Similarity=0.179 Sum_probs=207.5
Q ss_pred CcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccC
Q 037558 229 LKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNE 308 (518)
Q Consensus 229 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 308 (518)
++..+++.+.+.......+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4455666666665555556667789999999999998777888999999999999999886554 78899999999999
Q ss_pred CcccccCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccCh
Q 037558 309 NQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPT 388 (518)
Q Consensus 309 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 388 (518)
|.+++.. ..++|++|++++|.+++..+.. .++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+.
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred Ccccccc-----CCCCcCEEECCCCccCCcCccc--cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 9988432 3488999999999888654443 35688899998888887777788888888888888888876666
Q ss_pred hhh-cCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCC
Q 037558 389 SVR-NCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQ 467 (518)
Q Consensus 389 ~~~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~ 467 (518)
.+. .+++|++|++++|++++... ...+++|++|++++|++.+. |..+..+++|++|++++|++. .+|..+..+++
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~ 238 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQN 238 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTT
T ss_pred HHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCC
Confidence 653 67888888888888886532 33478888888888888854 444778888888888888888 57777888888
Q ss_pred CCEEeCcCCcCc-ccCCccccCCCCCCEEECcCCc-cccccC
Q 037558 468 LQALDLSLNHIV-GEIPKELGKLNSLTKLILRGNQ-RAVTLS 507 (518)
Q Consensus 468 L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~-~~~~ip 507 (518)
|+.|++++|++. +.++..+..++.|+.+++++|+ +.|..|
T Consensus 239 L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 888888888887 6777788888888888887443 444444
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.7e-28 Score=236.32 Aligned_cols=266 Identities=18% Similarity=0.151 Sum_probs=217.3
Q ss_pred CcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccC
Q 037558 205 IFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSK 284 (518)
Q Consensus 205 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 284 (518)
++..+++.+.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4455666666665555566778899999999999999878889999999999999999986554 88899999999999
Q ss_pred CcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCccccc-ccCcEEEccCccCcccCc
Q 037558 285 NELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGN-LILRELLLSGNHFAGYLP 363 (518)
Q Consensus 285 n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~~~~~~~ 363 (518)
|.+++. + ..++|++|++++|.+.+..+. .+++|++|++++|.+++..+..+.. +.|++|++++|.+.+..+
T Consensus 90 n~l~~l-~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 90 NYVQEL-L----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SEEEEE-E----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred Cccccc-c----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 998743 2 348999999999999865443 3678999999999998766656655 889999999999998777
Q ss_pred hhhc-CCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCC
Q 037558 364 YNIC-QGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCP 442 (518)
Q Consensus 364 ~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 442 (518)
..+. .+++|+.|++++|.+++. +. ...+++|++|++++|++++..+ .+..+++|+.|++++|++. .+|..+..++
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~ 237 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred HHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcCC
Confidence 6664 678999999999998855 32 3358999999999999996544 5888999999999999998 4677788899
Q ss_pred CCCEEEccCCccc-cCccccccCCCCCCEEeCcCC-cCcccCCc
Q 037558 443 KLDTLNVSMNNIT-GGIPREIGNSSQLQALDLSLN-HIVGEIPK 484 (518)
Q Consensus 443 ~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~ 484 (518)
+|+.|++++|++. +.++.++..+++|+.|+++++ .+.+..|.
T Consensus 238 ~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp TCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred CCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 9999999999998 678888899999999999866 45554443
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=4.4e-30 Score=271.17 Aligned_cols=417 Identities=15% Similarity=0.109 Sum_probs=284.4
Q ss_pred CCEEEEEcCCCCCccccC---C-----------ccCCCCCCCcEEeCCCCCCcccCCcccc-CCCCCCEEECCCC-CCCc
Q 037558 82 GRVINISLRNTGLSGTLH---G-----------FSFSSFPRLAYLDLTGSGLFGTIPPEVG-LLSHLKFLFIDTN-KLDG 145 (518)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~---~-----------~~l~~l~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~l~~n-~~~~ 145 (518)
.+++.++++++.....+. . .....+++|++|++++|.+.+..+..+. .+++|++|++++| .++.
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 145 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence 567888888765332221 0 0124688999999999988777666665 6899999999999 4543
Q ss_pred C-CCccCCCCCCCcEEEccCCCCCccCCcC----CcCCCCCCEEEccCcc--cccc-CCccccCCCCCcEEEcccCcCCC
Q 037558 146 S-IPPEVGQLSSMEVFFLCSNYLNGSVPPS----LGNLSHISLLFIYDNL--FSGF-IPSDIGNSKSIFNLDLSSNQFSG 217 (518)
Q Consensus 146 ~-~p~~l~~l~~L~~L~L~~n~~~~~~p~~----l~~l~~L~~L~l~~n~--~~~~-~~~~~~~~~~L~~L~l~~n~~~~ 217 (518)
. ++..+.++++|++|++++|.+.+..+.. ...+++|++|++++|. +... ++..+.++++|++|++++|...+
T Consensus 146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE 225 (594)
T ss_dssp HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence 2 4444568999999999999876544333 3467899999999986 2211 12223457999999999984333
Q ss_pred CcchhccCCCCCcEEEcccCc-------CCccccccccCCCCCCEe-eCcCCCCccCCcccccCCCCCcEEEccCCcCcc
Q 037558 218 PIPLFFGNLSNLKSLYLYGNS-------LSSPILSSLGKFKSLIDL-QLNENQFTGYIPRSFGNLTSLSTLRLSKNELFG 289 (518)
Q Consensus 218 ~~~~~l~~l~~L~~L~l~~n~-------~~~~~~~~l~~l~~L~~L-~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 289 (518)
.++..+..+++|++|++..+. +.+ ++..+.++++|+.| .+.+... +.++..+..+++|++|++++|.+++
T Consensus 226 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~ 303 (594)
T 2p1m_B 226 KLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQS 303 (594)
T ss_dssp HHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCH
T ss_pred HHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCH
Confidence 477778889999999976553 223 34467888899988 3433222 2445555577899999999998764
Q ss_pred cCc-cccCCCCCccEEEccCCccccc-CCccCcCCCCCCeeeccc---------ccccccCCcccc--cccCcEEEccCc
Q 037558 290 SIP-DEIGKMRSLSVLDLNENQFKGV-LPPSISNLTNLKELALLY---------NHLSGSIPPSLG--NLILRELLLSGN 356 (518)
Q Consensus 290 ~~p-~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~---------n~l~~~~p~~~~--~~~L~~L~l~~n 356 (518)
... ..+..+++|++|++++| +... ++.....+++|++|++.+ +.+++.....+. .++|+.|++..|
T Consensus 304 ~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~ 382 (594)
T 2p1m_B 304 YDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR 382 (594)
T ss_dssp HHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred HHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcC
Confidence 332 33567899999999988 4322 222334578899998844 333322211121 267889988888
Q ss_pred cCcccCchhhc-CCCCccEEecC--C----CcCcc-----ccChhhhcCCCCcEEEcccCccccccChhhhC-CCCCCEE
Q 037558 357 HFAGYLPYNIC-QGGALEIFTVS--E----NHFQG-----TIPTSVRNCTSLIRVHLNGNNLTGNISEALAI-YPNLTFI 423 (518)
Q Consensus 357 ~~~~~~~~~~~-~~~~L~~L~l~--~----n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L 423 (518)
.+++.....+. .+++|+.|+++ + +.+++ .++..+..+++|++|++++ .+++.....+.. +++|+.|
T Consensus 383 ~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L 461 (594)
T 2p1m_B 383 QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEML 461 (594)
T ss_dssp CCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEE
T ss_pred CcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEe
Confidence 88766555554 47889999988 3 34442 1222356788999999977 677665555555 8889999
Q ss_pred ecccCccccccCccc-cCCCCCCEEEccCCccccCccc-cccCCCCCCEEeCcCCcCcccCCccc-cCCCCCCEEECcCC
Q 037558 424 DLSRNNFYGEISSNW-GKCPKLDTLNVSMNNITGGIPR-EIGNSSQLQALDLSLNHIVGEIPKEL-GKLNSLTKLILRGN 500 (518)
Q Consensus 424 ~L~~n~l~~~~~~~~-~~~~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~l~~n 500 (518)
++++|.+++..+..+ ..+++|++|++++|.+++..+. ....+++|++|++++|+++......+ ..++.|+...+..+
T Consensus 462 ~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 462 SVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp EEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred eccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 999998876544444 6688999999999998654333 34567899999999998865544445 45788877666655
Q ss_pred cc
Q 037558 501 QR 502 (518)
Q Consensus 501 ~~ 502 (518)
..
T Consensus 542 ~~ 543 (594)
T 2p1m_B 542 GA 543 (594)
T ss_dssp SC
T ss_pred Cc
Confidence 43
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=2.5e-25 Score=232.47 Aligned_cols=266 Identities=23% Similarity=0.298 Sum_probs=179.7
Q ss_pred CCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCc
Q 037558 180 HISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLN 259 (518)
Q Consensus 180 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 259 (518)
+++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.+++ +|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 5888999999887 5566554 78899999999887 4454 56888888888888876 444 56788888888
Q ss_pred CCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccC
Q 037558 260 ENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSI 339 (518)
Q Consensus 260 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 339 (518)
+|.+++ +|. .+++|+.|++++|++++ +|.. +++|++|++++|.+.+ +|. .+++|+.|++++|.+++ +
T Consensus 110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l 176 (622)
T 3g06_A 110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-L 176 (622)
T ss_dssp SCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred CCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-C
Confidence 888875 343 56778888888888774 5543 4788888888888874 343 34677888888887774 4
Q ss_pred CcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCC
Q 037558 340 PPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPN 419 (518)
Q Consensus 340 p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 419 (518)
| ...++|+.|++++|.+.+. |. ..++|+.|++++|.+. .+|. .+++|++|++++|++++ +| ..+++
T Consensus 177 ~--~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~ 242 (622)
T 3g06_A 177 P--MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSE 242 (622)
T ss_dssp C--CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTT
T ss_pred c--ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCc
Confidence 4 2235677777777776652 22 1356777777777666 3333 23566777777776664 33 34466
Q ss_pred CCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCccccC
Q 037558 420 LTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGK 488 (518)
Q Consensus 420 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 488 (518)
|+.|++++|+++ .+|. .+++|+.|++++|+++ .+|..+..+++|+.|+|++|++.+..|..+..
T Consensus 243 L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 243 LKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp CCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred CcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 677777777666 3333 4566667777777666 55666666667777777777666666655443
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.3e-24 Score=227.19 Aligned_cols=195 Identities=28% Similarity=0.353 Sum_probs=125.0
Q ss_pred CCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEc
Q 037558 107 PRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFI 186 (518)
Q Consensus 107 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l 186 (518)
.++++|++++|.+. .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.+. .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 36889999999886 6676554 78999999999988 5666 5688999999998887 4555 5678888888
Q ss_pred cCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccC
Q 037558 187 YDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGY 266 (518)
Q Consensus 187 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 266 (518)
++|.+++. |. .+++|++|++++|.++. +|.. +++|++|++++|.+++ +|. ...+|+.|++++|.+++
T Consensus 109 s~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~- 175 (622)
T 3g06_A 109 FSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS- 175 (622)
T ss_dssp CSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-
T ss_pred cCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-
Confidence 88887753 32 45677788888777764 3432 3667777777776665 222 23456666666666653
Q ss_pred CcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeeccccccc
Q 037558 267 IPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLS 336 (518)
Q Consensus 267 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 336 (518)
+| ..+++|+.|++++|.+++ +|.. +++|+.|++++|.+. .+|. .+++|+.|++++|.++
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~ 234 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLT 234 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCS
T ss_pred Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccC
Confidence 33 234556666666666552 3321 345556666665555 2332 1244555555555544
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.3e-26 Score=237.41 Aligned_cols=236 Identities=17% Similarity=0.205 Sum_probs=156.4
Q ss_pred CCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeee
Q 037558 250 FKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELA 329 (518)
Q Consensus 250 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 329 (518)
+++|+.|++++|.+.+..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+.+.. ..++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence 3478888888888877767777788888888888888775554 677788888888888777432 236777777
Q ss_pred cccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhh-cCCCCcEEEcccCcccc
Q 037558 330 LLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVR-NCTSLIRVHLNGNNLTG 408 (518)
Q Consensus 330 l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~ 408 (518)
+++|.+++..+.. .+.|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+. .+++|++|+|++|.+++
T Consensus 106 L~~N~l~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 106 AANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CCSSCCCCEEECC--CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CcCCcCCCCCccc--cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 7777776544432 25567777777777766666666666777777777766666665554 56667777777776665
Q ss_pred ccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCc-ccCCcccc
Q 037558 409 NISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIV-GEIPKELG 487 (518)
Q Consensus 409 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~ 487 (518)
..+ ...+++|+.|++++|.+++..+ .+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|++. +.+|..+.
T Consensus 184 ~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 184 VKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred ccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 532 2246666677776666664333 35666666666666666663 5555666666666666666665 45555566
Q ss_pred CCCCCCEEECc
Q 037558 488 KLNSLTKLILR 498 (518)
Q Consensus 488 ~l~~L~~L~l~ 498 (518)
.++.|+.++++
T Consensus 260 ~l~~L~~l~~~ 270 (487)
T 3oja_A 260 KNQRVQTVAKQ 270 (487)
T ss_dssp TCHHHHHHHHH
T ss_pred hCCCCcEEecc
Confidence 66666666554
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=9.4e-27 Score=238.40 Aligned_cols=235 Identities=20% Similarity=0.161 Sum_probs=172.2
Q ss_pred CCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEE
Q 037558 226 LSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLD 305 (518)
Q Consensus 226 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 305 (518)
+++|++|++++|.+++..|..|..+++|++|++++|.+++..| +..+++|++|++++|.+++. | ..++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEE
Confidence 3478888888888887777778888888888888888776544 77788888888888877643 2 227788888
Q ss_pred ccCCcccccCCccCcCCCCCCeeecccccccccCCccccc-ccCcEEEccCccCcccCchhhc-CCCCccEEecCCCcCc
Q 037558 306 LNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGN-LILRELLLSGNHFAGYLPYNIC-QGGALEIFTVSENHFQ 383 (518)
Q Consensus 306 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~l~ 383 (518)
+++|.+.+..+. .+++|+.|++++|.+++..|..+.. +.|+.|++++|.+.+..|..+. .+++|+.|++++|.++
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 888887755433 3567888888888887766665554 7788888888888877776665 6778888888888877
Q ss_pred cccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccc-cCccccc
Q 037558 384 GTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNIT-GGIPREI 462 (518)
Q Consensus 384 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~-~~~~~~~ 462 (518)
+..+ ...+++|++|++++|.+++.++ .+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+. +.+|.++
T Consensus 183 ~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 183 DVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp EEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred cccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 5522 3357788888888888876544 47777888888888888874 5666777788888888888877 5666777
Q ss_pred cCCCCCCEEeCc
Q 037558 463 GNSSQLQALDLS 474 (518)
Q Consensus 463 ~~l~~L~~L~L~ 474 (518)
..++.|+.++++
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 777777777775
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=6.3e-24 Score=201.43 Aligned_cols=205 Identities=21% Similarity=0.233 Sum_probs=132.8
Q ss_pred CCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEc
Q 037558 107 PRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFI 186 (518)
Q Consensus 107 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l 186 (518)
++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46888888888887766667788888888888888887666667777888888888888877666677777778888888
Q ss_pred cCccccccCCccccCCCCCcEEEcccCcCCCC-cchhccCCCCCcEEEcccCcCCccccccccCCCCCC----EeeCcCC
Q 037558 187 YDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGP-IPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLI----DLQLNEN 261 (518)
Q Consensus 187 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~----~L~l~~n 261 (518)
++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+.+++ .|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 77777766665677777777777777777653 466666667777777777766665555554444444 4555555
Q ss_pred CCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCccc
Q 037558 262 QFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFK 312 (518)
Q Consensus 262 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 312 (518)
.+.+..+..+ ...+|++|++++|++++..+..+..+++|++|++++|.+.
T Consensus 188 ~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 188 PMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred cccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 5553332222 2234555555555554333333444555555555555444
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=9.1e-24 Score=200.34 Aligned_cols=151 Identities=22% Similarity=0.209 Sum_probs=81.2
Q ss_pred EECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcC
Q 037558 136 LFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQF 215 (518)
Q Consensus 136 L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 215 (518)
.+..+..+. .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 344444444 4555443 4566666666666655444666666666666666666655555566666666666666666
Q ss_pred CCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccC-CcccccCCCCCcEEEccCCcCcc
Q 037558 216 SGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGY-IPRSFGNLTSLSTLRLSKNELFG 289 (518)
Q Consensus 216 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~ 289 (518)
++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|++++
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence 554445555555555555555555544333444444555555555444431 24444444444444444444443
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=5.2e-23 Score=194.34 Aligned_cols=201 Identities=25% Similarity=0.329 Sum_probs=97.5
Q ss_pred CCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEcc
Q 037558 108 RLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIY 187 (518)
Q Consensus 108 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~ 187 (518)
..+.++++++.+.. +|..+. +++++|++++|.+++..+..|.++++|++|++++|.+....+..+.++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 45566666665542 443332 456666666666654444455556666666666665553333334555555555555
Q ss_pred CccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCC
Q 037558 188 DNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYI 267 (518)
Q Consensus 188 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 267 (518)
+|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 55555444444455555555555555555444444444555555555555444433333444444444444444444333
Q ss_pred cccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcc
Q 037558 268 PRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQF 311 (518)
Q Consensus 268 ~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 311 (518)
+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 33344444444444444444432222333344444444444433
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1e-23 Score=199.42 Aligned_cols=206 Identities=21% Similarity=0.317 Sum_probs=103.6
Q ss_pred CCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCE
Q 037558 104 SSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISL 183 (518)
Q Consensus 104 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~ 183 (518)
..+++|++|++++|.+.. + ..+..+++|++|++++|.+++ + ..++++++|++|++++|.+.+..+..+.++++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 345555555555555432 1 234555555555555555543 1 24455555555555555555444444455555555
Q ss_pred EEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCC
Q 037558 184 LFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQF 263 (518)
Q Consensus 184 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 263 (518)
|++++|++.+..+..+..+++|++|++++|.++ +..+..+..+++|+.|++++|++
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------------------~~~~~~~~~l~~L~~L~l~~n~l 169 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ------------------------SLPKGVFDKLTNLTELDLSYNQL 169 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC------------------------CCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccC------------------------ccCHHHhccCccCCEEECCCCCc
Confidence 555555554444444444444555555444444 43333344444555555555555
Q ss_pred ccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccccCCccc
Q 037558 264 TGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSL 343 (518)
Q Consensus 264 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~ 343 (518)
++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+. +++|+.+++..|.++|.+|..+
T Consensus 170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 170 QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTT
T ss_pred CccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcc
Confidence 444444444555555555555555544444455555555555555554422 3445555555666665555544
Q ss_pred c
Q 037558 344 G 344 (518)
Q Consensus 344 ~ 344 (518)
+
T Consensus 243 ~ 243 (272)
T 3rfs_A 243 G 243 (272)
T ss_dssp S
T ss_pred c
Confidence 3
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=2.4e-23 Score=196.90 Aligned_cols=209 Identities=26% Similarity=0.263 Sum_probs=162.6
Q ss_pred CCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEE
Q 037558 153 QLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSL 232 (518)
Q Consensus 153 ~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 232 (518)
.+++|++|++++|.+.. + ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 34444555555444431 1 2345555666666666655542 356667777777777777776666667778888888
Q ss_pred EcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCccc
Q 037558 233 YLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFK 312 (518)
Q Consensus 233 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 312 (518)
++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 88888888767777888999999999999999877777889999999999999999777777889999999999999999
Q ss_pred ccCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCC
Q 037558 313 GVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGA 371 (518)
Q Consensus 313 ~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 371 (518)
+..+..+..+++|+.|++++|.+.+..| .++.+++..|.+.|.+|..++.+..
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~------~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDCTCP------GIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCTT------TTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred ccCHHHHhCCcCCCEEEccCCCccccCc------HHHHHHHHHHhCCCcccCcccccCC
Confidence 8877788999999999999999886554 5788889999999999988776543
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.3e-22 Score=193.46 Aligned_cols=202 Identities=22% Similarity=0.220 Sum_probs=103.7
Q ss_pred CCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCC
Q 037558 103 FSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHIS 182 (518)
Q Consensus 103 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~ 182 (518)
+.+++++++++++++.+. .+|..+. +++++|++++|.+++..+..+.++++|++|++++|.+.+. +.. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCC
Confidence 445566666666666654 3343332 4566666666666555555566666666666666665532 221 4555555
Q ss_pred EEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCC
Q 037558 183 LLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQ 262 (518)
Q Consensus 183 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 262 (518)
+|++++|.+. .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 5555555554 334445555555555555555554444445555555555555555554444444444555555555555
Q ss_pred CccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcc
Q 037558 263 FTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQF 311 (518)
Q Consensus 263 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 311 (518)
+++..+..+..+++|++|++++|+++ .+|..+...++|+.+++++|.+
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 44333333344444555555544444 3444444444444444444444
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=1.4e-25 Score=219.35 Aligned_cols=265 Identities=17% Similarity=0.216 Sum_probs=164.9
Q ss_pred CCccCceeeCCCCCEEEEEcCCCCCccccCCccCCCC--CCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcC-
Q 037558 70 PCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSF--PRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGS- 146 (518)
Q Consensus 70 ~c~w~g~~c~~~~~v~~l~l~~~~~~~~~~~~~l~~l--~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~- 146 (518)
|.+|.++.|+ ...++.++++++.+... .+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+.
T Consensus 36 c~~W~~~~~~-~~~~~~l~l~~~~~~~~----~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~ 109 (336)
T 2ast_B 36 CKRWYRLASD-ESLWQTLDLTGKNLHPD----VTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVST 109 (336)
T ss_dssp CHHHHHHHTC-STTSSEEECTTCBCCHH----HHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHH
T ss_pred HHHHHHHhcC-chhheeeccccccCCHH----HHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHH
Confidence 3469888775 34567788887766521 34445 6788888888877666554 55678888888888877654
Q ss_pred CCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCc-ccccc-CCccccCCCCCcEEEcccC-cCCCC-cchh
Q 037558 147 IPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDN-LFSGF-IPSDIGNSKSIFNLDLSSN-QFSGP-IPLF 222 (518)
Q Consensus 147 ~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n-~~~~~-~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~ 222 (518)
+|..+.++++|++|++++|.+.+..+..+.++++|++|++++| .+++. ++..+.++++|++|++++| .+++. ++..
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 189 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 189 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH
Confidence 6666777778888888877777666666777777777777777 45542 4555666777777777777 66643 4555
Q ss_pred ccCCC-CCcEEEcccC--cCC-ccccccccCCCCCCEeeCcCCC-CccCCcccccCCCCCcEEEccCCc-CcccCccccC
Q 037558 223 FGNLS-NLKSLYLYGN--SLS-SPILSSLGKFKSLIDLQLNENQ-FTGYIPRSFGNLTSLSTLRLSKNE-LFGSIPDEIG 296 (518)
Q Consensus 223 l~~l~-~L~~L~l~~n--~~~-~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~p~~~~ 296 (518)
+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+.
T Consensus 190 ~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~ 269 (336)
T 2ast_B 190 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG 269 (336)
T ss_dssp HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG
T ss_pred HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh
Confidence 66666 7777777776 343 3344555566667777776666 554555556666666666666663 2211112355
Q ss_pred CCCCccEEEccCCcccccCCccCcCC-CCCCeeecccccccccCCcccc
Q 037558 297 KMRSLSVLDLNENQFKGVLPPSISNL-TNLKELALLYNHLSGSIPPSLG 344 (518)
Q Consensus 297 ~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~p~~~~ 344 (518)
.+++|++|++++| +... .+..+ .+++.|+++.|.+++..|..+.
T Consensus 270 ~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 270 EIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp GCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred cCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCccc
Confidence 5666666666666 3221 11122 2244445555655555554443
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=2.5e-22 Score=191.42 Aligned_cols=202 Identities=23% Similarity=0.237 Sum_probs=103.8
Q ss_pred ccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCc
Q 037558 127 VGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIF 206 (518)
Q Consensus 127 ~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 206 (518)
+..++++++++++++.++ .+|..+. +++++|++++|.+.+..+..+.++++|++|++++|.+++..+ ...+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence 344555555555555554 3444432 355555555555554444455555555555555555544322 14455555
Q ss_pred EEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCc
Q 037558 207 NLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNE 286 (518)
Q Consensus 207 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 286 (518)
+|++++|.++ .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 5555555554 344444555555555555555555444455555555555555555554444444455555555555555
Q ss_pred CcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccc
Q 037558 287 LFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHL 335 (518)
Q Consensus 287 l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 335 (518)
+++..+..+..+++|++|++++|.++ .+|..+...++|+.+++++|.+
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 55333333444555555555555555 3444444445555555555544
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=2.3e-24 Score=212.74 Aligned_cols=255 Identities=20% Similarity=0.182 Sum_probs=141.7
Q ss_pred EEEcccCcCCCCcchhccCCCCCcEEEcccCcCCcccc----ccccCCC-CCCEeeCcCCCCccCCcccccCC-----CC
Q 037558 207 NLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPIL----SSLGKFK-SLIDLQLNENQFTGYIPRSFGNL-----TS 276 (518)
Q Consensus 207 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~----~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l-----~~ 276 (518)
+++++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45677888887777777776778888888888877555 5666776 78888888888776666555553 77
Q ss_pred CcEEEccCCcCcccCccccC----CC-CCccEEEccCCcccccCCccC----cC-CCCCCeeecccccccccCCccc---
Q 037558 277 LSTLRLSKNELFGSIPDEIG----KM-RSLSVLDLNENQFKGVLPPSI----SN-LTNLKELALLYNHLSGSIPPSL--- 343 (518)
Q Consensus 277 L~~L~l~~n~l~~~~p~~~~----~l-~~L~~L~l~~n~l~~~~~~~l----~~-l~~L~~L~l~~n~l~~~~p~~~--- 343 (518)
|++|++++|.+++..+..+. .+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+++..+..+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 77888887777765554333 33 677777777777765544332 22 2466777777666653222211
Q ss_pred -cc--ccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcC-CCCcEEEcccCccccc----cChhhh
Q 037558 344 -GN--LILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNC-TSLIRVHLNGNNLTGN----ISEALA 415 (518)
Q Consensus 344 -~~--~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~----~~~~l~ 415 (518)
.. .+|++|++++|.+.+..+..+.. .+..+ ++|++|++++|++++. ++..+.
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~--------------------~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAK--------------------FLASIPASVTSLDLSANLLGLKSYAELAYIFS 221 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHH--------------------HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHH--------------------HHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence 11 24555555555444433322211 12222 3555555555555432 222333
Q ss_pred C-CCCCCEEecccCccccccC----ccccCCCCCCEEEccCCcccc-------CccccccCCCCCCEEeCcCCcCccc
Q 037558 416 I-YPNLTFIDLSRNNFYGEIS----SNWGKCPKLDTLNVSMNNITG-------GIPREIGNSSQLQALDLSLNHIVGE 481 (518)
Q Consensus 416 ~-l~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~ls~n~l~~-------~~~~~~~~l~~L~~L~L~~n~l~~~ 481 (518)
. .++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+ .++..+..+++|+.||+++|++.+.
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 3 2355555555555543321 223444555555555555321 1222344555555556666555443
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=1.6e-24 Score=215.96 Aligned_cols=245 Identities=20% Similarity=0.247 Sum_probs=139.0
Q ss_pred ccccccCCCCCCEeeCcCCCCccCCc----ccccCCCCCcEEEccCC---cCcccCcccc-------CCCCCccEEEccC
Q 037558 243 ILSSLGKFKSLIDLQLNENQFTGYIP----RSFGNLTSLSTLRLSKN---ELFGSIPDEI-------GKMRSLSVLDLNE 308 (518)
Q Consensus 243 ~~~~l~~l~~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~l~~n---~l~~~~p~~~-------~~l~~L~~L~l~~ 308 (518)
++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++| ++.+.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 44455566677777777777665432 23556677777777764 3334444433 4566777777777
Q ss_pred Ccccc----cCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCC---------CCccEE
Q 037558 309 NQFKG----VLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQG---------GALEIF 375 (518)
Q Consensus 309 n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~---------~~L~~L 375 (518)
|.+.+ .++..+..+++|++|++++|.+++..+..+.. .+..+ ++|+.|
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~-------------------~l~~l~~~~~~~~~~~L~~L 164 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR-------------------ALQELAVNKKAKNAPPLRSI 164 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH-------------------HHHHHHHHHHHHTCCCCCEE
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH-------------------HHHHHhhhhhcccCCCCcEE
Confidence 77665 24445566666666666666654322222111 11111 455556
Q ss_pred ecCCCcCc-cccC---hhhhcCCCCcEEEcccCcccc-----ccChhhhCCCCCCEEecccCccc----cccCccccCCC
Q 037558 376 TVSENHFQ-GTIP---TSVRNCTSLIRVHLNGNNLTG-----NISEALAIYPNLTFIDLSRNNFY----GEISSNWGKCP 442 (518)
Q Consensus 376 ~l~~n~l~-~~~~---~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~~~~~~ 442 (518)
++++|.+. +.++ ..+..+++|++|++++|+++. ..+..+..+++|++|+|++|.++ +.++..+..++
T Consensus 165 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~ 244 (386)
T 2ca6_A 165 ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244 (386)
T ss_dssp ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred ECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC
Confidence 66555554 2233 244456666666666666652 12225556666666666666664 34455556666
Q ss_pred CCCEEEccCCccccC----cccccc--CCCCCCEEeCcCCcCcc----cCCccc-cCCCCCCEEECcCCcccccc
Q 037558 443 KLDTLNVSMNNITGG----IPREIG--NSSQLQALDLSLNHIVG----EIPKEL-GKLNSLTKLILRGNQRAVTL 506 (518)
Q Consensus 443 ~L~~L~ls~n~l~~~----~~~~~~--~l~~L~~L~L~~n~l~~----~~~~~l-~~l~~L~~L~l~~n~~~~~i 506 (518)
+|++|++++|.+.+. ++..+. .+++|+.|+|++|++.+ .+|..+ .++++|++|++++|++.+..
T Consensus 245 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 666666666666543 344442 26666666666666665 355555 44666666666666666544
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=5.5e-24 Score=209.98 Aligned_cols=255 Identities=17% Similarity=0.159 Sum_probs=158.0
Q ss_pred EEcccCcCCccccccccCCCCCCEeeCcCCCCccCCc----ccccCCC-CCcEEEccCCcCcccCccccCCC-----CCc
Q 037558 232 LYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIP----RSFGNLT-SLSTLRLSKNELFGSIPDEIGKM-----RSL 301 (518)
Q Consensus 232 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~p~~~~~l-----~~L 301 (518)
+.+++|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3455555555555444444445555555555554433 3444444 55555555555554444433332 455
Q ss_pred cEEEccCCcccccCCccCcCCCCCCeeecccccccccCCccccc-ccCcEEEccCccCcccCchhh----cC-CCCccEE
Q 037558 302 SVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGN-LILRELLLSGNHFAGYLPYNI----CQ-GGALEIF 375 (518)
Q Consensus 302 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n~~~~~~~~~~----~~-~~~L~~L 375 (518)
++|++++|.+++..+..+... .... ++|++|++++|.+.+..+..+ .. ..+|+.|
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~-------------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L 143 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKT-------------------LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSL 143 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHH-------------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEE
T ss_pred cEEECcCCcCChHHHHHHHHH-------------------HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEE
Confidence 555555555543333321111 0000 345555555555544433332 22 2578888
Q ss_pred ecCCCcCcccc----ChhhhcCC-CCcEEEcccCccccccCh----hhhCC-CCCCEEecccCccccc----cCccccC-
Q 037558 376 TVSENHFQGTI----PTSVRNCT-SLIRVHLNGNNLTGNISE----ALAIY-PNLTFIDLSRNNFYGE----ISSNWGK- 440 (518)
Q Consensus 376 ~l~~n~l~~~~----~~~~~~l~-~L~~L~L~~n~l~~~~~~----~l~~l-~~L~~L~L~~n~l~~~----~~~~~~~- 440 (518)
++++|.+.+.. +..+..++ +|++|++++|++++..+. .+..+ ++|++|++++|.+.+. ++..+..
T Consensus 144 ~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~ 223 (362)
T 3goz_A 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI 223 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHS
T ss_pred EccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcC
Confidence 88888776433 33445555 999999999999877654 44455 5999999999999863 3444544
Q ss_pred CCCCCEEEccCCccccCcc----ccccCCCCCCEEeCcCCcCcccC-------CccccCCCCCCEEECcCCccccc
Q 037558 441 CPKLDTLNVSMNNITGGIP----REIGNSSQLQALDLSLNHIVGEI-------PKELGKLNSLTKLILRGNQRAVT 505 (518)
Q Consensus 441 ~~~L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~-------~~~l~~l~~L~~L~l~~n~~~~~ 505 (518)
.++|++|++++|.+.+..+ ..+..+++|++|++++|++.+.. +..+..+++|++||+++|++.+.
T Consensus 224 ~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 4699999999999986544 34577899999999999955433 34567888999999999999876
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=3.2e-22 Score=186.77 Aligned_cols=190 Identities=21% Similarity=0.267 Sum_probs=119.2
Q ss_pred CCCccCceeeCCCCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCC
Q 037558 69 SPCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIP 148 (518)
Q Consensus 69 ~~c~w~g~~c~~~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p 148 (518)
+||.|.|..|.. ..+.++++++++.. +|. .+. +.+++|++++|.+.+..+..+..+++|++|++++|.+++..+
T Consensus 3 ~Cp~~~gC~C~~--~~~~l~~~~~~l~~-~p~-~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE--GKKEVDCQGKSLDS-VPS-GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG--GGTEEECTTCCCSS-CCS-CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC--CCeEEecCCCCccc-cCC-CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 577899999953 23467777777663 333 222 567777777777776666667777777777777777776666
Q ss_pred ccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCC
Q 037558 149 PEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSN 228 (518)
Q Consensus 149 ~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~ 228 (518)
..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 66677777777777777776555555666666666666666666555555556666666666666665444445555555
Q ss_pred CcEEEcccCcCCccccccccCCCCCCEeeCcCCCCc
Q 037558 229 LKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFT 264 (518)
Q Consensus 229 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 264 (518)
|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 555555555555544444455555555555555444
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=6.9e-23 Score=197.61 Aligned_cols=225 Identities=20% Similarity=0.211 Sum_probs=125.6
Q ss_pred CCCcEEeCCCCCCcccCCc---cccCCCCCCEEECCCCCCCcCCCccC--CCCCCCcEEEccCCCCCccCC----cCCcC
Q 037558 107 PRLAYLDLTGSGLFGTIPP---EVGLLSHLKFLFIDTNKLDGSIPPEV--GQLSSMEVFFLCSNYLNGSVP----PSLGN 177 (518)
Q Consensus 107 ~~L~~L~L~~~~~~~~~~~---~~~~l~~L~~L~l~~n~~~~~~p~~l--~~l~~L~~L~L~~n~~~~~~p----~~l~~ 177 (518)
..++.+.+.++.+...... .+..+++|++|++++|.+.+..|..+ .++++|++|++++|.+.+..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3466666666655432110 11223557777777777776666666 667777777777777665433 23345
Q ss_pred CCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCC--c--chhccCCCCCcEEEcccCcCCccc--cc-cccCC
Q 037558 178 LSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGP--I--PLFFGNLSNLKSLYLYGNSLSSPI--LS-SLGKF 250 (518)
Q Consensus 178 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~--~~~l~~l~~L~~L~l~~n~~~~~~--~~-~l~~l 250 (518)
+++|++|++++|.+.+..+..+..+++|++|++++|++.+. + +..+..+++|++|++++|.++... +. .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 66666777766666666666666666666666666665431 1 112245566666666666664311 11 13445
Q ss_pred CCCCEeeCcCCCCccCCcccccCC---CCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCe
Q 037558 251 KSLIDLQLNENQFTGYIPRSFGNL---TSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKE 327 (518)
Q Consensus 251 ~~L~~L~l~~n~~~~~~~~~l~~l---~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 327 (518)
++|++|++++|++++..|..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 566666666666665545444444 45666666666655 4444432 5566666666665532 22 344555555
Q ss_pred eeccccccc
Q 037558 328 LALLYNHLS 336 (518)
Q Consensus 328 L~l~~n~l~ 336 (518)
|++++|.++
T Consensus 299 L~L~~N~l~ 307 (310)
T 4glp_A 299 LTLDGNPFL 307 (310)
T ss_dssp EECSSTTTS
T ss_pred EECcCCCCC
Confidence 555555554
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=7.7e-24 Score=206.90 Aligned_cols=254 Identities=17% Similarity=0.192 Sum_probs=143.1
Q ss_pred CcEEEcccCcCCccccccccCC--CCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCccc-CccccCCCCCccEEE
Q 037558 229 LKSLYLYGNSLSSPILSSLGKF--KSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGS-IPDEIGKMRSLSVLD 305 (518)
Q Consensus 229 L~~L~l~~n~~~~~~~~~l~~l--~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~L~~L~ 305 (518)
++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 566677666554 2334444 5666666666666654443 44566666666666666543 555566666666666
Q ss_pred ccCCcccccCCccCcCCCCCCeeecccc-cccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCC-cCc
Q 037558 306 LNENQFKGVLPPSISNLTNLKELALLYN-HLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSEN-HFQ 383 (518)
Q Consensus 306 l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n-~l~ 383 (518)
+++|.+.+..+..+..+++|++|++++| .+++. .++..+..+++|+.|++++| .++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~----------------------~l~~~~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF----------------------ALQTLLSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH----------------------HHHHHHHHCTTCCEEECCCCTTCC
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH----------------------HHHHHHhcCCCCCEEcCCCCCCcC
Confidence 6666666555555555666666666665 33321 13333445556666666666 555
Q ss_pred cc-cChhhhcCC-CCcEEEcccC--ccc-cccChhhhCCCCCCEEecccCc-cccccCccccCCCCCCEEEccCCc-ccc
Q 037558 384 GT-IPTSVRNCT-SLIRVHLNGN--NLT-GNISEALAIYPNLTFIDLSRNN-FYGEISSNWGKCPKLDTLNVSMNN-ITG 456 (518)
Q Consensus 384 ~~-~~~~~~~l~-~L~~L~L~~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~ls~n~-l~~ 456 (518)
+. ++..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +..
T Consensus 183 ~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 262 (336)
T 2ast_B 183 EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP 262 (336)
T ss_dssp HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG
T ss_pred hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCH
Confidence 33 344555666 6666666666 344 3344555566666666666666 554555556666667777776663 222
Q ss_pred CccccccCCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCccccccCccCc
Q 037558 457 GIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINK 511 (518)
Q Consensus 457 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip~~l~ 511 (518)
.....+.++++|++|++++| +.......+. ..++.|++++|++.+..|..++
T Consensus 263 ~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 263 ETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp GGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred HHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCccc
Confidence 22224556667777777766 3322222221 1244445667777666665554
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=4e-24 Score=213.00 Aligned_cols=245 Identities=21% Similarity=0.244 Sum_probs=166.6
Q ss_pred CcchhccCCCCCcEEEcccCcCCcccc----ccccCCCCCCEeeCcCCC---CccCCcccc-------cCCCCCcEEEcc
Q 037558 218 PIPLFFGNLSNLKSLYLYGNSLSSPIL----SSLGKFKSLIDLQLNENQ---FTGYIPRSF-------GNLTSLSTLRLS 283 (518)
Q Consensus 218 ~~~~~l~~l~~L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~l~~n~---~~~~~~~~l-------~~l~~L~~L~l~ 283 (518)
.++..+..+++|++|++++|.++...+ ..+..+++|++|++++|. +.+.+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 456677888999999999999987544 447789999999999964 445556554 688999999999
Q ss_pred CCcCcc----cCccccCCCCCccEEEccCCcccccCCccCc----CC---------CCCCeeeccccccc-ccCCccccc
Q 037558 284 KNELFG----SIPDEIGKMRSLSVLDLNENQFKGVLPPSIS----NL---------TNLKELALLYNHLS-GSIPPSLGN 345 (518)
Q Consensus 284 ~n~l~~----~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~----~l---------~~L~~L~l~~n~l~-~~~p~~~~~ 345 (518)
+|.+++ .+|..+..+++|++|++++|.+.+..+..+. .+ ++|++|++++|.++ +.++.
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---- 178 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE---- 178 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH----
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH----
Confidence 999987 4677888899999999999999754333332 22 55666666665554 11111
Q ss_pred ccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCcc-----ccChhhhcCCCCcEEEcccCccc----cccChhhhC
Q 037558 346 LILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQG-----TIPTSVRNCTSLIRVHLNGNNLT----GNISEALAI 416 (518)
Q Consensus 346 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~l~~ 416 (518)
+...+..+++|+.|++++|.+.. ..+..+..+++|++|+|++|.++ ..++..+..
T Consensus 179 ----------------l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~ 242 (386)
T 2ca6_A 179 ----------------WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242 (386)
T ss_dssp ----------------HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred ----------------HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc
Confidence 01234445566666666665542 22335566677777777777765 445566667
Q ss_pred CCCCCEEecccCccccc----cCcccc--CCCCCCEEEccCCcccc----Cccccc-cCCCCCCEEeCcCCcCcccC
Q 037558 417 YPNLTFIDLSRNNFYGE----ISSNWG--KCPKLDTLNVSMNNITG----GIPREI-GNSSQLQALDLSLNHIVGEI 482 (518)
Q Consensus 417 l~~L~~L~L~~n~l~~~----~~~~~~--~~~~L~~L~ls~n~l~~----~~~~~~-~~l~~L~~L~L~~n~l~~~~ 482 (518)
+++|++|+|++|.+++. ++..+. .+++|++|++++|.+.+ .+|..+ .++++|++|++++|++.+..
T Consensus 243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 77777777777777654 344442 36777777777777775 366655 45677777777777777655
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=7.9e-22 Score=182.72 Aligned_cols=195 Identities=20% Similarity=0.206 Sum_probs=96.9
Q ss_pred CCEEECCCCCCCcCCCccCCCCCCCcEEEccCCC-CCccCCcCCcCCCCCCEEEccC-ccccccCCccccCCCCCcEEEc
Q 037558 133 LKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNY-LNGSVPPSLGNLSHISLLFIYD-NLFSGFIPSDIGNSKSIFNLDL 210 (518)
Q Consensus 133 L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~-~~~~~p~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~l 210 (518)
|++|++++|.+++..+..++++++|++|++++|. +.+..+..|.++++|++|++++ |.+++..+..+.++++|++|++
T Consensus 33 l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l 112 (239)
T 2xwt_C 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112 (239)
T ss_dssp CCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEE
T ss_pred ccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeC
Confidence 4444444444443333334444444444444443 3322223444444555555544 4444444444455555555555
Q ss_pred ccCcCCCCcchhccCCCCCc---EEEcccC-cCCccccccccCCCCCC-EeeCcCCCCccCCcccccCCCCCcEEEccCC
Q 037558 211 SSNQFSGPIPLFFGNLSNLK---SLYLYGN-SLSSPILSSLGKFKSLI-DLQLNENQFTGYIPRSFGNLTSLSTLRLSKN 285 (518)
Q Consensus 211 ~~n~~~~~~~~~l~~l~~L~---~L~l~~n-~~~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 285 (518)
++|.+++ +|. +..+++|+ +|++++| .+++..+..|..+++|+ .|++++|+++. +|......++|++|++++|
T Consensus 113 ~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~-i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 113 FNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp EEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE-ECTTTTTTCEEEEEECTTC
T ss_pred CCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc-cCHhhcCCCCCCEEEcCCC
Confidence 5555543 333 44444454 5555555 55554444555555666 66666665552 2322222256666666666
Q ss_pred c-CcccCccccCCC-CCccEEEccCCcccccCCccCcCCCCCCeeecccc
Q 037558 286 E-LFGSIPDEIGKM-RSLSVLDLNENQFKGVLPPSISNLTNLKELALLYN 333 (518)
Q Consensus 286 ~-l~~~~p~~~~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 333 (518)
+ +++..+..+..+ ++|++|++++|.+++ +|.. .+++|+.|+++++
T Consensus 190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 3 554444555666 666666666666653 3322 4455666665543
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=3.4e-22 Score=192.73 Aligned_cols=225 Identities=20% Similarity=0.169 Sum_probs=184.2
Q ss_pred CEEEEEcCCCCCccccCC--ccCCCCCCCcEEeCCCCCCcccCCccc--cCCCCCCEEECCCCCCCcCCC----ccCCCC
Q 037558 83 RVINISLRNTGLSGTLHG--FSFSSFPRLAYLDLTGSGLFGTIPPEV--GLLSHLKFLFIDTNKLDGSIP----PEVGQL 154 (518)
Q Consensus 83 ~v~~l~l~~~~~~~~~~~--~~l~~l~~L~~L~L~~~~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~p----~~l~~l 154 (518)
+++.+.+.+..+....-. ..+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 466777776665432100 012345679999999999999999888 999999999999999987655 445689
Q ss_pred CCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCcccccc--C--CccccCCCCCcEEEcccCcCCCCcch----hccCC
Q 037558 155 SSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGF--I--PSDIGNSKSIFNLDLSSNQFSGPIPL----FFGNL 226 (518)
Q Consensus 155 ~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~--~--~~~~~~~~~L~~L~l~~n~~~~~~~~----~l~~l 226 (518)
++|++|++++|.+.+..+..+.++++|++|++++|++.+. + +..+..+++|++|++++|.++. ++. .++.+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence 9999999999999988888999999999999999997652 2 2334789999999999999973 333 35788
Q ss_pred CCCcEEEcccCcCCccccccccCC---CCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccE
Q 037558 227 SNLKSLYLYGNSLSSPILSSLGKF---KSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSV 303 (518)
Q Consensus 227 ~~L~~L~l~~n~~~~~~~~~l~~l---~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 303 (518)
++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|++
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence 999999999999999878777776 69999999999999 5677664 8999999999999853 44 678899999
Q ss_pred EEccCCcccc
Q 037558 304 LDLNENQFKG 313 (518)
Q Consensus 304 L~l~~n~l~~ 313 (518)
|++++|.++.
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999999874
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=4.8e-21 Score=178.80 Aligned_cols=177 Identities=27% Similarity=0.320 Sum_probs=82.5
Q ss_pred CCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEccc
Q 037558 133 LKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSS 212 (518)
Q Consensus 133 L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 212 (518)
.++++++++.++ .+|..+. +++++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 334444444444 3443332 3444444444444444444444444444444444444444444444444455555554
Q ss_pred CcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCc
Q 037558 213 NQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIP 292 (518)
Q Consensus 213 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 292 (518)
|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 44444433444444455555555444444333334444445555555554444333344444555555555555444333
Q ss_pred cccCCCCCccEEEccCCccc
Q 037558 293 DEIGKMRSLSVLDLNENQFK 312 (518)
Q Consensus 293 ~~~~~l~~L~~L~l~~n~l~ 312 (518)
..+..+++|++|++++|.+.
T Consensus 173 ~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTTCTTCCEEECCSCCBC
T ss_pred HHHhCCCCCCEEEeeCCcee
Confidence 34444555555555555544
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=2.3e-21 Score=186.50 Aligned_cols=194 Identities=20% Similarity=0.315 Sum_probs=96.5
Q ss_pred CCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCC
Q 037558 103 FSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHIS 182 (518)
Q Consensus 103 l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~ 182 (518)
..++++|++|++++|.+.. ++ .+..+++|++|++++|.+++ ++. +.++++|++|++++|.+.+ + +.+.++++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCC
Confidence 3455666666666666543 23 45666666666666666653 333 6666666666666666553 2 2455555666
Q ss_pred EEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCC
Q 037558 183 LLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQ 262 (518)
Q Consensus 183 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 262 (518)
+|++++|.+.+. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 666666555542 1 25555555555555555543222 4444555555555554443211 4444444444444444
Q ss_pred CccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCccc
Q 037558 263 FTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFK 312 (518)
Q Consensus 263 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 312 (518)
+++..+ +..+++|++|++++|++++.. .+..+++|++|++++|.++
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 443211 334444444444444443222 1334444444444444443
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=4.3e-21 Score=184.65 Aligned_cols=207 Identities=26% Similarity=0.303 Sum_probs=154.6
Q ss_pred eCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCcccc
Q 037558 113 DLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFS 192 (518)
Q Consensus 113 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~ 192 (518)
.+..+.+.+.+ ....+++|++|++++|.+. .+| .+..+++|++|++++|.+.+. +. +.++++|++|++++|.+.
T Consensus 25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLK 98 (308)
T ss_dssp HTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCS
T ss_pred HhCCCCcCcee--cHHHcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCC
Confidence 44444444332 2456778888888888887 355 577888888888888888743 33 788888888888888877
Q ss_pred ccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCccccc
Q 037558 193 GFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFG 272 (518)
Q Consensus 193 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~ 272 (518)
+. ..+..+++|++|++++|.+++. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++.. . +.
T Consensus 99 ~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~-~-l~ 170 (308)
T 1h6u_A 99 NV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT-P-LA 170 (308)
T ss_dssp CC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-G-GT
T ss_pred Cc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCCh-h-hc
Confidence 54 3578888888888888888753 3 27788888888888888876433 778888888888888887543 3 77
Q ss_pred CCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCeeecccccccc
Q 037558 273 NLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKELALLYNHLSG 337 (518)
Q Consensus 273 ~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 337 (518)
.+++|++|++++|++++..+ +..+++|++|++++|.+.+.. .+..+++|+.|++++|.+++
T Consensus 171 ~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 171 NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 88888888888888874433 677888888888888887543 36778888888888888864
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=3.4e-21 Score=178.46 Aligned_cols=203 Identities=19% Similarity=0.239 Sum_probs=157.7
Q ss_pred CCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCcc-ccccCCccccCCCCCcEEEccc-CcCCCCcchhc
Q 037558 146 SIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNL-FSGFIPSDIGNSKSIFNLDLSS-NQFSGPIPLFF 223 (518)
Q Consensus 146 ~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~l 223 (518)
.+|. +. ++|++|++++|.+.+..+..+.++++|++|++++|. +++..+..+.++++|++|++++ |.+++..+..|
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 4555 33 389999999999987666688899999999999997 8777777888999999999998 88887666788
Q ss_pred cCCCCCcEEEcccCcCCccccccccCCCCCC---EeeCcCC-CCccCCcccccCCCCCc-EEEccCCcCcccCccccCCC
Q 037558 224 GNLSNLKSLYLYGNSLSSPILSSLGKFKSLI---DLQLNEN-QFTGYIPRSFGNLTSLS-TLRLSKNELFGSIPDEIGKM 298 (518)
Q Consensus 224 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~---~L~l~~n-~~~~~~~~~l~~l~~L~-~L~l~~n~l~~~~p~~~~~l 298 (518)
..+++|++|++++|.+++ +|. +..+++|+ +|++++| .+++..+..|..+++|+ +|++++|+++ .+|......
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~ 178 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG 178 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT
T ss_pred CCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC
Confidence 889999999999998887 554 77788887 8888888 88876666788888888 8888888887 444433333
Q ss_pred CCccEEEccCCc-ccccCCccCcCC-CCCCeeecccccccccCCcccccccCcEEEccCc
Q 037558 299 RSLSVLDLNENQ-FKGVLPPSISNL-TNLKELALLYNHLSGSIPPSLGNLILRELLLSGN 356 (518)
Q Consensus 299 ~~L~~L~l~~n~-l~~~~~~~l~~l-~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n 356 (518)
++|++|++++|+ +++..+..+..+ ++|+.|++++|.+++ +|.. ....++.|+++++
T Consensus 179 ~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK-GLEHLKELIARNT 236 (239)
T ss_dssp CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT-TCTTCSEEECTTC
T ss_pred CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh-HhccCceeeccCc
Confidence 788888888884 876666677777 888888888888773 4433 3355666666554
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=8e-21 Score=171.96 Aligned_cols=185 Identities=19% Similarity=0.250 Sum_probs=132.1
Q ss_pred CCCccCceeeCCCCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCC
Q 037558 69 SPCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIP 148 (518)
Q Consensus 69 ~~c~w~g~~c~~~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p 148 (518)
..|.|.++.|...+ +. .+|. .-.++|++|++++|.+.+..+..+..+++|++|++++|.+++..+
T Consensus 5 C~C~~~~v~c~~~~-----------l~-~~p~---~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 69 (208)
T 2o6s_A 5 CSCSGTTVECYSQG-----------RT-SVPT---GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN 69 (208)
T ss_dssp CEEETTEEECCSSC-----------CS-SCCS---CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred CEECCCEEEecCCC-----------cc-CCCC---CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccCh
Confidence 45789999996432 11 1222 224588899999988876666667888888888888888885555
Q ss_pred ccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCC
Q 037558 149 PEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSN 228 (518)
Q Consensus 149 ~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~ 228 (518)
..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++
T Consensus 70 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 149 (208)
T 2o6s_A 70 GVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149 (208)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred hhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCC
Confidence 55788888888888888887655556778888888888888887766666777788888888888777655556677777
Q ss_pred CcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCC
Q 037558 229 LKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLT 275 (518)
Q Consensus 229 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~ 275 (518)
|++|++++|.+.+ .+++|++|+++.|+++|.+|..++.++
T Consensus 150 L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 150 LQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp CCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 7777777775543 344566666666666666666555443
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=2.8e-20 Score=191.97 Aligned_cols=200 Identities=23% Similarity=0.318 Sum_probs=133.9
Q ss_pred CCCC-----ccCce-eeCCCCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCC
Q 037558 68 ISPC-----AWYGI-SCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTN 141 (518)
Q Consensus 68 ~~~c-----~w~g~-~c~~~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n 141 (518)
.++| .|.++ .|. .++++.++++++++.+ +|. .+ +++|++|+|++|.+. .+| ..+++|++|++++|
T Consensus 40 ~~~~~~~~~~~~~l~~C~-~~~L~~L~Ls~n~L~~-lp~-~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N 110 (571)
T 3cvr_A 40 ALPGENRNEAVSLLKECL-INQFSELQLNRLNLSS-LPD-NL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDN 110 (571)
T ss_dssp CCTTCCHHHHHHHHHHHH-HTTCSEEECCSSCCSC-CCS-CC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSS
T ss_pred CCccccccchhhhccccc-cCCccEEEeCCCCCCc-cCH-hH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCC
Confidence 4566 68888 674 3578888888888876 554 33 377888888888876 556 45678888888888
Q ss_pred CCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcch
Q 037558 142 KLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPL 221 (518)
Q Consensus 142 ~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 221 (518)
.+++ +|. +.+ +|++|++++|.+.+ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|.
T Consensus 111 ~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~ 177 (571)
T 3cvr_A 111 RLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE 177 (571)
T ss_dssp CCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC
T ss_pred CCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch
Confidence 8875 666 654 78888888888875 555 56778888888887775 443 46677777777777775 554
Q ss_pred hccCCCCCcEEEcccCcCCccccccccCCCCC-------CEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccc
Q 037558 222 FFGNLSNLKSLYLYGNSLSSPILSSLGKFKSL-------IDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDE 294 (518)
Q Consensus 222 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L-------~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~ 294 (518)
+. ++|+.|++++|.++. +|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+++.+|..
T Consensus 178 -l~--~~L~~L~Ls~N~L~~-lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 178 -LP--ESLEALDVSTNLLES-LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp -CC--TTCCEEECCSSCCSS-CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred -hh--CCCCEEECcCCCCCc-hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 44 677777777777763 444 433 45 66666666665 34555555666666666666665555554
Q ss_pred cCC
Q 037558 295 IGK 297 (518)
Q Consensus 295 ~~~ 297 (518)
+..
T Consensus 250 l~~ 252 (571)
T 3cvr_A 250 LSQ 252 (571)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=1e-19 Score=164.62 Aligned_cols=131 Identities=23% Similarity=0.293 Sum_probs=60.0
Q ss_pred CCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEc
Q 037558 131 SHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDL 210 (518)
Q Consensus 131 ~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 210 (518)
++|++|++++|.+++..+..++++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+.++++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 35555555555555333334455555555555555555333333444555555555555544443333444444444444
Q ss_pred ccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCC
Q 037558 211 SSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNEN 261 (518)
Q Consensus 211 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 261 (518)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 444444333333344444444444444444333333333333444444333
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.9e-19 Score=176.46 Aligned_cols=239 Identities=18% Similarity=0.159 Sum_probs=157.1
Q ss_pred cEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCc-cccCCCCCccE-EEcc
Q 037558 230 KSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIP-DEIGKMRSLSV-LDLN 307 (518)
Q Consensus 230 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L~~-L~l~ 307 (518)
++++.++++++. +|..+. +++++|++++|+++...+..|.++++|++|++++|++.+.+| ..|.+++++.+ +.+.
T Consensus 12 ~~v~C~~~~Lt~-iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTE-IPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCS-CCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCc-cCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 567778888776 555553 578999999999886555678889999999999998765555 45777887765 5566
Q ss_pred CCcccccCCccCcCCCCCCeeecccccccccCCccccc-ccCcEEEccCc-cCcccCchhhcCC-CCccEEecCCCcCcc
Q 037558 308 ENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGN-LILRELLLSGN-HFAGYLPYNICQG-GALEIFTVSENHFQG 384 (518)
Q Consensus 308 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-~~L~~L~l~~n-~~~~~~~~~~~~~-~~L~~L~l~~n~l~~ 384 (518)
+|++.+..|..+..+++|++|++++|.+.+..+..+.. ..+..+++.++ .+....+..+... ..++.|++++|+++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence 78888777778888899999999998887544443333 56677777654 4444434444444 34667777777776
Q ss_pred ccChhhhcCCCCcEEEccc-CccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCcccccc
Q 037558 385 TIPTSVRNCTSLIRVHLNG-NNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIG 463 (518)
Q Consensus 385 ~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~ 463 (518)
.++.......+|+++++.+ |.++...++.|..+++|++|++++|+++.. |. ..+.+|+.|.+.++.-...+|. +.
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l-p~--~~~~~L~~L~~l~~~~l~~lP~-l~ 243 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL-PS--YGLENLKKLRARSTYNLKKLPT-LE 243 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC-CS--SSCTTCCEEECTTCTTCCCCCC-TT
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc-Ch--hhhccchHhhhccCCCcCcCCC-ch
Confidence 3444444456677777754 455544445666777777777777776633 32 1244556666555544445553 56
Q ss_pred CCCCCCEEeCcCC
Q 037558 464 NSSQLQALDLSLN 476 (518)
Q Consensus 464 ~l~~L~~L~L~~n 476 (518)
.+++|+.+++.++
T Consensus 244 ~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 244 KLVALMEASLTYP 256 (350)
T ss_dssp TCCSCCEEECSCH
T ss_pred hCcChhhCcCCCC
Confidence 6667777776554
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=3.2e-19 Score=184.09 Aligned_cols=186 Identities=23% Similarity=0.316 Sum_probs=140.2
Q ss_pred CCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEcc
Q 037558 108 RLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIY 187 (518)
Q Consensus 108 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~ 187 (518)
+++.|++++|.+.+ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+.+ +|. +.+ +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 88999999998876 66655 378999999999888 677 457889999999998885 666 655 88899999
Q ss_pred CccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCC
Q 037558 188 DNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYI 267 (518)
Q Consensus 188 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 267 (518)
+|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|++++|+++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 888887 454 67888888888888885 554 56788888888888877 555 55 78888888888887 45
Q ss_pred cccccCCCCC-------cEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcC
Q 037558 268 PRSFGNLTSL-------STLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISN 321 (518)
Q Consensus 268 ~~~l~~l~~L-------~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 321 (518)
|. +.. +| +.|++++|+++ .+|..+..+++|+.|++++|.+++.+|..+..
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 55 443 56 77788777776 56666666777777777777777766665544
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=6.7e-19 Score=172.62 Aligned_cols=181 Identities=17% Similarity=0.085 Sum_probs=94.4
Q ss_pred CCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCc-cCCCCCCCcE-EEccCCCCCccCCcCCcCCCCCCEE
Q 037558 107 PRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPP-EVGQLSSMEV-FFLCSNYLNGSVPPSLGNLSHISLL 184 (518)
Q Consensus 107 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~-~l~~l~~L~~-L~L~~n~~~~~~p~~l~~l~~L~~L 184 (518)
+++++|+|++|++...-+.+|.++++|++|+|++|.+.+.+|. .|.+++++++ +.++.|++....|..|.++++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 4677777777777544445566777777777777766544443 3566666554 4444566665555556666666666
Q ss_pred EccCccccccCCccccCCCCCcEEEccc-CcCCCCcchhccCCC-CCcEEEcccCcCCccccccccCCCCCCEeeCcC-C
Q 037558 185 FIYDNLFSGFIPSDIGNSKSIFNLDLSS-NQFSGPIPLFFGNLS-NLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNE-N 261 (518)
Q Consensus 185 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n 261 (518)
++++|++....+..+....++..+++.+ +.+....+..+..+. .++.|++++|.++...+. .....+++.+++.+ |
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~-~f~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS-AFNGTQLDELNLSDNN 188 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTT-SSTTEEEEEEECTTCT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChh-hccccchhHHhhccCC
Confidence 6666666655444444555555555544 233322223333332 345555555555442222 22233455555543 3
Q ss_pred CCccCCcccccCCCCCcEEEccCCcCc
Q 037558 262 QFTGYIPRSFGNLTSLSTLRLSKNELF 288 (518)
Q Consensus 262 ~~~~~~~~~l~~l~~L~~L~l~~n~l~ 288 (518)
.++...+..|..+++|++|++++|+++
T Consensus 189 ~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 189 NLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp TCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred cccCCCHHHhccCcccchhhcCCCCcC
Confidence 333222233444555555555555544
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=1.5e-18 Score=159.19 Aligned_cols=158 Identities=22% Similarity=0.289 Sum_probs=113.6
Q ss_pred CCCCccCceeeCCCCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCC
Q 037558 68 ISPCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSI 147 (518)
Q Consensus 68 ~~~c~w~g~~c~~~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 147 (518)
.+.|.|.++.|...+ + +.+|. .+ .++|++|+|++|.+.+..+..+..+++|++|++++|.++...
T Consensus 16 ~~~Cs~~~v~c~~~~-----------l-~~ip~-~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~ 80 (229)
T 3e6j_A 16 QCSCSGTTVDCRSKR-----------H-ASVPA-GI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP 80 (229)
T ss_dssp TCEEETTEEECTTSC-----------C-SSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCEEeCCEeEccCCC-----------c-CccCC-CC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC
Confidence 588999999996422 1 12332 22 278888888888888777778888888888888888887444
Q ss_pred CccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCC
Q 037558 148 PPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLS 227 (518)
Q Consensus 148 p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~ 227 (518)
+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..+..++
T Consensus 81 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 159 (229)
T 3e6j_A 81 VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCC
Confidence 455678888888888888887655556677778888888777777 5566677777777777777777755555666667
Q ss_pred CCcEEEcccCcCCc
Q 037558 228 NLKSLYLYGNSLSS 241 (518)
Q Consensus 228 ~L~~L~l~~n~~~~ 241 (518)
+|+.|++++|.+..
T Consensus 160 ~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 160 SLTHAYLFGNPWDC 173 (229)
T ss_dssp TCCEEECTTSCBCT
T ss_pred CCCEEEeeCCCccC
Confidence 77777777666553
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=3.2e-19 Score=186.14 Aligned_cols=170 Identities=22% Similarity=0.335 Sum_probs=77.1
Q ss_pred CCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCE
Q 037558 104 SSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISL 183 (518)
Q Consensus 104 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~ 183 (518)
..+++|+.|++++|.+... + .+..+++|++|+|++|.+.+. +. +..+++|++|+|++|.+.+ + +.+..+++|++
T Consensus 40 ~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCC-hh-hccCCCCCEEECcCCCCCC-C-hhhccCCCCCE
Confidence 3445555555555554321 2 345555555555555555432 22 4555555555555555542 1 23444555555
Q ss_pred EEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCC
Q 037558 184 LFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQF 263 (518)
Q Consensus 184 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 263 (518)
|++++|.+.+. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 55555554432 2344444455555544444432 234444444444444444444222 44444444444444444
Q ss_pred ccCCcccccCCCCCcEEEccCCcC
Q 037558 264 TGYIPRSFGNLTSLSTLRLSKNEL 287 (518)
Q Consensus 264 ~~~~~~~l~~l~~L~~L~l~~n~l 287 (518)
.+. ..+..+++|+.|++++|++
T Consensus 188 ~~l--~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 188 SDL--RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp CBC--GGGTTCTTCSEEECCSEEE
T ss_pred CCC--hHHccCCCCCEEEccCCcC
Confidence 432 1234444444444444443
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=8.7e-19 Score=166.99 Aligned_cols=170 Identities=27% Similarity=0.429 Sum_probs=78.0
Q ss_pred CCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEE
Q 037558 129 LLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNL 208 (518)
Q Consensus 129 ~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 208 (518)
.+++|++|++++|.+. .++ .+..+++|++|++++|.+.+.. . +.++++|++|++++|.+.+. ..+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIK-P-LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCCc-c-cccCCCCCEEECCCCcCCCC--hhhccCCCCCEE
Confidence 3444444444444443 122 2444444444444444444221 1 44444444444444444431 124444455555
Q ss_pred EcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCc
Q 037558 209 DLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELF 288 (518)
Q Consensus 209 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 288 (518)
++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 5555544432 2344445555555555554442 334445555555555555543322 445555555555555554
Q ss_pred ccCccccCCCCCccEEEccCCccc
Q 037558 289 GSIPDEIGKMRSLSVLDLNENQFK 312 (518)
Q Consensus 289 ~~~p~~~~~l~~L~~L~l~~n~l~ 312 (518)
+ ++ .+..+++|+.|++++|.+.
T Consensus 192 ~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 192 D-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp B-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred C-Ch-hhccCCCCCEEECcCCccc
Confidence 2 22 2445555555555555554
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=157.29 Aligned_cols=153 Identities=17% Similarity=0.129 Sum_probs=92.7
Q ss_pred CeeecccccccccCCcccccccCcEEEccCccCcccCc-hhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccC
Q 037558 326 KELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLP-YNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGN 404 (518)
Q Consensus 326 ~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 404 (518)
+.+++++|.++ .+|..+. ..++.|++++|.+.+..+ ..+..+++|+.|++++|.+++..+..+..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~-~iP~~~~-~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP-QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC-TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcc-cCccCCC-CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 46777777766 3454332 345667777776665533 33555666666666666666555555666666666666666
Q ss_pred ccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcc
Q 037558 405 NLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVG 480 (518)
Q Consensus 405 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 480 (518)
++++..+..+..+++|++|++++|++.+..|..+..+++|++|++++|++++..|..|..+++|++|++++|++.+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 6665555556666666666666666665555556666666666666666665555556666666666666666553
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1e-18 Score=166.57 Aligned_cols=174 Identities=22% Similarity=0.331 Sum_probs=146.2
Q ss_pred cCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCC
Q 037558 102 SFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHI 181 (518)
Q Consensus 102 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L 181 (518)
.+..+++|++|++++|.+... + .+..+++|++|++++|.+++ ++. +.++++|++|++++|.+.+ + +.+..+++|
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L 114 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-L-SSLKDLKKL 114 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-G-GGGTTCTTC
T ss_pred chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-C-hhhccCCCC
Confidence 345788899999999988654 3 48889999999999999985 444 8899999999999999875 3 348889999
Q ss_pred CEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCC
Q 037558 182 SLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNEN 261 (518)
Q Consensus 182 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 261 (518)
++|++++|.+.+. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|+.|++++|
T Consensus 115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence 9999999998864 4688899999999999999865 568889999999999999988544 888999999999999
Q ss_pred CCccCCcccccCCCCCcEEEccCCcCcc
Q 037558 262 QFTGYIPRSFGNLTSLSTLRLSKNELFG 289 (518)
Q Consensus 262 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 289 (518)
.+++. + .+..+++|+.|++++|+++.
T Consensus 189 ~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 189 HISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred cCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 99863 4 48899999999999998874
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=9.4e-18 Score=152.87 Aligned_cols=86 Identities=16% Similarity=0.208 Sum_probs=35.5
Q ss_pred CCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEc
Q 037558 131 SHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDL 210 (518)
Q Consensus 131 ~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l 210 (518)
++|++|++++|.+++..+..|.++++|++|++++|.+.+..|..|.++++|++|++++|.++...+..+..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 34444444444444333334444444444444444444333444444444444444444443332222333333333333
Q ss_pred ccCcCC
Q 037558 211 SSNQFS 216 (518)
Q Consensus 211 ~~n~~~ 216 (518)
++|.++
T Consensus 112 ~~N~l~ 117 (220)
T 2v9t_B 112 NANKIN 117 (220)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 333333
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=6.6e-18 Score=153.89 Aligned_cols=152 Identities=18% Similarity=0.166 Sum_probs=101.6
Q ss_pred CeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCc
Q 037558 326 KELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNN 405 (518)
Q Consensus 326 ~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 405 (518)
+.++.+++.++ .+|..+. ..++.|++++|.+.+..+..+..+++|+.|++++|.+.+..|..|..+++|++|+|++|+
T Consensus 14 ~~v~c~~~~l~-~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcC-cCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 46777777766 4454332 567777777777776666666666777777777777766666666677777777777777
Q ss_pred cccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCc
Q 037558 406 LTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIV 479 (518)
Q Consensus 406 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 479 (518)
++...+..+..+++|++|+|++|++.+..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 76555555666677777777777776666666666677777777777766555555666666777777776654
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=4.5e-18 Score=177.53 Aligned_cols=169 Identities=24% Similarity=0.390 Sum_probs=103.4
Q ss_pred CCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEE
Q 037558 82 GRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFF 161 (518)
Q Consensus 82 ~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 161 (518)
.+++.|+++++.+.. ++ .+..+++|+.|+|++|.+.+..+ +..+++|++|+|++|.+.+ +| .+..+++|++|+
T Consensus 43 ~~L~~L~l~~n~i~~-l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 43 NSIDQIIANNSDIKS-VQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS 115 (605)
T ss_dssp TTCCCCBCTTCCCCC-CT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred CCCCEEECcCCCCCC-Ch--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence 355566666665543 22 35666666666666666654333 6666666666666666653 22 566666666666
Q ss_pred ccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCc
Q 037558 162 LCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSS 241 (518)
Q Consensus 162 L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 241 (518)
|++|.+.+ + +.+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..| +..+++|+.|++++|.+++
T Consensus 116 Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 116 LEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp CTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 66666653 2 3466666666666666666654 456666666666666666665444 6666666666666666665
Q ss_pred cccccccCCCCCCEeeCcCCCCcc
Q 037558 242 PILSSLGKFKSLIDLQLNENQFTG 265 (518)
Q Consensus 242 ~~~~~l~~l~~L~~L~l~~n~~~~ 265 (518)
. ..+..+++|+.|++++|.+.+
T Consensus 190 l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 190 L--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp C--GGGTTCTTCSEEECCSEEEEC
T ss_pred C--hHHccCCCCCEEEccCCcCcC
Confidence 2 346666666666666666554
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=1.1e-17 Score=152.42 Aligned_cols=131 Identities=24% Similarity=0.243 Sum_probs=61.2
Q ss_pred cEEEccCCCCCccCC-cCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEccc
Q 037558 158 EVFFLCSNYLNGSVP-PSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYG 236 (518)
Q Consensus 158 ~~L~L~~n~~~~~~p-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 236 (518)
++|++++|.+.+..+ ..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..|..+++|++|++++
T Consensus 35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 114 (220)
T 2v70_A 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS 114 (220)
T ss_dssp SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTT
T ss_pred CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCC
Confidence 444444444443322 2234444445555544444444444444455555555555555444444444455555555555
Q ss_pred CcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCc
Q 037558 237 NSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELF 288 (518)
Q Consensus 237 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 288 (518)
|.+++..+..+..+++|++|++++|++++..|..|..+++|++|++++|.+.
T Consensus 115 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 115 NRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 5444444444444444444444444444444444444444444444444443
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=3.6e-18 Score=168.13 Aligned_cols=156 Identities=21% Similarity=0.120 Sum_probs=91.0
Q ss_pred CcEEEccCccCcccCchhhc-CCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecc
Q 037558 348 LRELLLSGNHFAGYLPYNIC-QGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLS 426 (518)
Q Consensus 348 L~~L~l~~n~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 426 (518)
++.|++++|.+.+..+..+. .+++|+.|++++|.+.+..+..|..+++|++|+|++|+++...+..+..+++|++|+|+
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 44444555544444444444 55566666666666655555556666666666666666665555566666666666666
Q ss_pred cCccccccCccccCCCCCCEEEccCCccccCccccc---cCCCCCCEEeCcCCcCcccCCccccCCCC--CCEEECcCCc
Q 037558 427 RNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREI---GNSSQLQALDLSLNHIVGEIPKELGKLNS--LTKLILRGNQ 501 (518)
Q Consensus 427 ~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~l~~l~~--L~~L~l~~n~ 501 (518)
+|++.+..+..|..+++|++|++++|++.+..+..| ..+++|+.|+|++|++.+..+..+..++. ++.|++++|+
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 666665556666666666666666666664333333 44666666666666666544455555554 3566666666
Q ss_pred cc
Q 037558 502 RA 503 (518)
Q Consensus 502 ~~ 503 (518)
+.
T Consensus 201 ~~ 202 (361)
T 2xot_A 201 LE 202 (361)
T ss_dssp EE
T ss_pred cc
Confidence 64
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=1.2e-17 Score=153.15 Aligned_cols=152 Identities=16% Similarity=0.068 Sum_probs=77.3
Q ss_pred CCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccC
Q 037558 325 LKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGN 404 (518)
Q Consensus 325 L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 404 (518)
-+.++.+++.++ .+|..+. ++++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|+|++|
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcC-ccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 345666665554 3443222 45555555555555555555555555555555555554333334445555555555555
Q ss_pred ccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCc
Q 037558 405 NLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIV 479 (518)
Q Consensus 405 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 479 (518)
++++..+..+..+++|++|++++|++. .+|..+..+++|++|++++|++.+..+..+..+++|+.|++++|++.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 555444444455555555555555554 34444445555555555555555333334445555555555555544
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=5.8e-18 Score=166.63 Aligned_cols=176 Identities=19% Similarity=0.185 Sum_probs=115.1
Q ss_pred cEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCC-CCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccC
Q 037558 110 AYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVG-QLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYD 188 (518)
Q Consensus 110 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~-~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~ 188 (518)
+.++++++.+.. +|..+. +.+++|+|++|.+++..+..+. ++++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 467777777643 554432 4577788888887765555565 777778888877777766666677777777777777
Q ss_pred ccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccc---cCCCCCCEeeCcCCCCcc
Q 037558 189 NLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSL---GKFKSLIDLQLNENQFTG 265 (518)
Q Consensus 189 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l---~~l~~L~~L~l~~n~~~~ 265 (518)
|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+ ..+++|+.|++++|.+++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 77776666667777777777777777776666667777777777777777666333333 345666666666666664
Q ss_pred CCcccccCCCC--CcEEEccCCcCc
Q 037558 266 YIPRSFGNLTS--LSTLRLSKNELF 288 (518)
Q Consensus 266 ~~~~~l~~l~~--L~~L~l~~n~l~ 288 (518)
..+..+..++. ++.|++++|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 44444555544 255666665544
No 113
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=7.5e-20 Score=195.71 Aligned_cols=261 Identities=16% Similarity=0.177 Sum_probs=129.5
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCCCCCcCCCCCCCCCCCCCccCceeeCCCCCEEEEEcCCCCCccccCCccCCCCCCCcE
Q 037558 32 PNEEADTLLKWKASLQSRNQSRLPSWTKATTNVSSKISPCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAY 111 (518)
Q Consensus 32 ~~~~~~~l~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~~c~w~g~~c~~~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~ 111 (518)
...+++++.++........+..-..|... ....+.|.+..+. ..+++.++|.++.+... +. .+.....|+.
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~s-~~~~~~l~L~~n~~~~~-~~-~~l~~l~Ls~ 200 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSKTAKKQQPTGD------STPSGTATNSAVS-TPLTPKIELFANGKDEA-NQ-ALLQHKKLSQ 200 (727)
T ss_dssp --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred cccchhhhhhhhhhcccccCcccCCCcCC------CCccccCCCceec-CCccceEEeeCCCCCcc-hh-hHhhcCccCc
Confidence 34567888888877644333333445432 1345678877765 36789999988877653 22 2222222333
Q ss_pred EeC-----CCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEc
Q 037558 112 LDL-----TGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFI 186 (518)
Q Consensus 112 L~L-----~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l 186 (518)
+.+ +.|.+. ..++.+..++.|+.|+|++|.+. .+|..+.++++|++|+|++|.+. .+|..|.++++|++|+|
T Consensus 201 ~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 277 (727)
T 4b8c_D 201 YSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDL 277 (727)
T ss_dssp ----------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEEC
T ss_pred ccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeC
Confidence 222 222222 34667888999999999999988 78888888999999999999988 78888899999999999
Q ss_pred cCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCC-CCCEeeCcCCCCcc
Q 037558 187 YDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFK-SLIDLQLNENQFTG 265 (518)
Q Consensus 187 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~ 265 (518)
++|.++ .+|..++++++|++|+|++|.++ .+|..|+.+++|++|+|++|.+++.+|..+.... ....+++++|.+++
T Consensus 278 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~ 355 (727)
T 4b8c_D 278 SHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI 355 (727)
T ss_dssp TTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred cCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC
Confidence 999988 66888999999999999999887 6777788999999999999999887777665432 12346788888887
Q ss_pred CCcccccCCCCCcEEEccCC--------cCcccCccccCCCCCccEEEccCCccc
Q 037558 266 YIPRSFGNLTSLSTLRLSKN--------ELFGSIPDEIGKMRSLSVLDLNENQFK 312 (518)
Q Consensus 266 ~~~~~l~~l~~L~~L~l~~n--------~l~~~~p~~~~~l~~L~~L~l~~n~l~ 312 (518)
.+|.. |+.|++++| .+.+..+..+..+..+....+++|.+.
T Consensus 356 ~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 356 PLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp CCCCC-----------------------------------------------CCC
T ss_pred cCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 76654 445556555 222222333344555556666666654
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=7e-18 Score=151.05 Aligned_cols=152 Identities=14% Similarity=0.183 Sum_probs=80.9
Q ss_pred CCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEE
Q 037558 129 LLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNL 208 (518)
Q Consensus 129 ~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 208 (518)
.+++|++|++++|.++ .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3444455555554444 333 3444555555555555332 12344555555555555555555445555555555555
Q ss_pred EcccCcCCCCcchhccCCCCCcEEEcccCc-CCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcC
Q 037558 209 DLSSNQFSGPIPLFFGNLSNLKSLYLYGNS-LSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNEL 287 (518)
Q Consensus 209 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 287 (518)
++++|.+++..+..++.+++|++|++++|. ++. ++ .+..+++|+.|++++|.+++. + .+..+++|++|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence 555555555455555556666666666665 333 22 455666666666666666542 2 456666677777776665
Q ss_pred c
Q 037558 288 F 288 (518)
Q Consensus 288 ~ 288 (518)
.
T Consensus 194 ~ 194 (197)
T 4ezg_A 194 G 194 (197)
T ss_dssp -
T ss_pred C
Confidence 4
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1.4e-17 Score=149.00 Aligned_cols=153 Identities=20% Similarity=0.241 Sum_probs=85.9
Q ss_pred CCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCE
Q 037558 104 SSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISL 183 (518)
Q Consensus 104 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~ 183 (518)
.++++|++|++++|.+. .++ .+..+++|++|++++|.++ .+..+..+++|++|++++|.+.+..+..+.++++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34555666666666554 333 4555666666666666443 2335556666666666666665555555666666666
Q ss_pred EEccCccccccCCccccCCCCCcEEEcccCc-CCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCC
Q 037558 184 LFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQ-FSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQ 262 (518)
Q Consensus 184 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 262 (518)
|++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 6666666655555556666666666666665 33 333 45556666666666666554 22 45555666666666665
Q ss_pred Cc
Q 037558 263 FT 264 (518)
Q Consensus 263 ~~ 264 (518)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 44
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.74 E-value=2.1e-20 Score=193.93 Aligned_cols=120 Identities=17% Similarity=0.246 Sum_probs=64.1
Q ss_pred ccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccC
Q 037558 372 LEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSM 451 (518)
Q Consensus 372 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~ 451 (518)
|+.|++++|.+++ +|. +..+++|+.|++++|+++ .+|..+..+++|+.|+|++|++++ +| .+..+++|++|++++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 5555555555553 343 555555555666555555 445555555555555555555554 33 455555555555555
Q ss_pred CccccCc-cccccCCCCCCEEeCcCCcCcccCCcc---ccCCCCCCEEE
Q 037558 452 NNITGGI-PREIGNSSQLQALDLSLNHIVGEIPKE---LGKLNSLTKLI 496 (518)
Q Consensus 452 n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~ 496 (518)
|++++.. |..+..+++|+.|++++|++.+..|.. +..+++|+.|+
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 5555443 555555555555555555555433311 12355555554
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=2.2e-17 Score=154.80 Aligned_cols=168 Identities=19% Similarity=0.237 Sum_probs=84.4
Q ss_pred CCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEE
Q 037558 106 FPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLF 185 (518)
Q Consensus 106 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 185 (518)
+.+++.++++++.+.+.. .+..+++|++|++++|.++ .+| .+..+++|++|++++|.+.+. +. +.++++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEE
Confidence 344555555555554322 3555666666666666665 344 455666666666666666533 22 55566666666
Q ss_pred ccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCcc
Q 037558 186 IYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTG 265 (518)
Q Consensus 186 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 265 (518)
+++|.+++. +. +.. ++|++|++++|.+++. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++
T Consensus 92 L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcc
Confidence 666655542 21 112 5555555555555532 2344555555555555554442 134444444444444444443
Q ss_pred CCcccccCCCCCcEEEccCCcCc
Q 037558 266 YIPRSFGNLTSLSTLRLSKNELF 288 (518)
Q Consensus 266 ~~~~~l~~l~~L~~L~l~~n~l~ 288 (518)
. ..+..+++|+.|++++|++.
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEE
T ss_pred h--HHhccCCCCCEEeCCCCccc
Confidence 3 23444444444444444443
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=1.5e-19 Score=187.54 Aligned_cols=203 Identities=16% Similarity=0.166 Sum_probs=142.9
Q ss_pred CCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCc-------------CcccCccccCCCCCccEEE-ccCCccccc
Q 037558 249 KFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNE-------------LFGSIPDEIGKMRSLSVLD-LNENQFKGV 314 (518)
Q Consensus 249 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-------------l~~~~p~~~~~l~~L~~L~-l~~n~l~~~ 314 (518)
..++|+.|++++|++. .+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~--- 422 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL--- 422 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH---
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc---
Confidence 3445555555555554 345555555555555554432 2233444444445555544 333322
Q ss_pred CCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCC
Q 037558 315 LPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCT 394 (518)
Q Consensus 315 ~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 394 (518)
.+|+.+.+.+|.+++. | ...++.|++++|.+.+ +|. +..+++|+.|++++|.++ .+|..+..++
T Consensus 423 --------~~L~~l~l~~n~i~~l-~----~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 486 (567)
T 1dce_A 423 --------DDLRSKFLLENSVLKM-E----YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALR 486 (567)
T ss_dssp --------HHHHHHHHHHHHHHHH-H----HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred --------chhhhhhhhccccccc-C----ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCC
Confidence 1233344444444421 1 1358899999999887 455 888999999999999998 7899999999
Q ss_pred CCcEEEcccCccccccChhhhCCCCCCEEecccCcccccc-CccccCCCCCCEEEccCCccccCcccc---ccCCCCCCE
Q 037558 395 SLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEI-SSNWGKCPKLDTLNVSMNNITGGIPRE---IGNSSQLQA 470 (518)
Q Consensus 395 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~ls~n~l~~~~~~~---~~~l~~L~~ 470 (518)
+|+.|+|++|++++ +| .+..+++|++|+|++|++++.. |..+..+++|+.|++++|++++..|.. +..+++|+.
T Consensus 487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence 99999999999997 55 8999999999999999999876 899999999999999999999755432 345889999
Q ss_pred EeC
Q 037558 471 LDL 473 (518)
Q Consensus 471 L~L 473 (518)
|++
T Consensus 565 L~l 567 (567)
T 1dce_A 565 ILT 567 (567)
T ss_dssp EEC
T ss_pred cCC
Confidence 875
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=1.5e-17 Score=155.88 Aligned_cols=169 Identities=18% Similarity=0.275 Sum_probs=107.2
Q ss_pred CCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEE
Q 037558 129 LLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNL 208 (518)
Q Consensus 129 ~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 208 (518)
.+.++..++++++.+++ ++ .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++..+ +.++++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 45566777778777763 33 4667788888888888776 444 57777778888888777776544 7777777777
Q ss_pred EcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCc
Q 037558 209 DLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELF 288 (518)
Q Consensus 209 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 288 (518)
++++|.+++ ++. +.. ++|++|++++|.+++. ..+..+++|+.|++++|++++. + .+..+++|++|++++|+++
T Consensus 91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 777777764 222 222 6666666666666652 2455666666666666666543 2 3555666666666666655
Q ss_pred ccCccccCCCCCccEEEccCCccc
Q 037558 289 GSIPDEIGKMRSLSVLDLNENQFK 312 (518)
Q Consensus 289 ~~~p~~~~~l~~L~~L~l~~n~l~ 312 (518)
+. ..+..+++|+.|++++|.+.
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEE
T ss_pred ch--HHhccCCCCCEEeCCCCccc
Confidence 43 34555556666666665555
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=1.7e-16 Score=141.25 Aligned_cols=132 Identities=18% Similarity=0.196 Sum_probs=95.6
Q ss_pred cEEEccCccCcccCchhhcCCCCccEEecCCCcCccccCh-hhhcCCCCcEEEcccCccccccChhhhCCCCCCEEeccc
Q 037558 349 RELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPT-SVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSR 427 (518)
Q Consensus 349 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 427 (518)
+.+++++|.+. .+|..+. .+++.|++++|.+.+..+. .+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 57777777774 3444333 2777788888877755543 367777788888888877777777777777788888888
Q ss_pred CccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCC
Q 037558 428 NNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIP 483 (518)
Q Consensus 428 n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 483 (518)
|++.+..+..+..+++|++|++++|++++..|..+..+++|++|++++|++.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 87777767667777778888888877777777777777777778887777765433
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=2.7e-17 Score=159.76 Aligned_cols=104 Identities=15% Similarity=0.078 Sum_probs=83.6
Q ss_pred cCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCC-EEEccCCccccCccccccCCCCCCE
Q 037558 392 NCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLD-TLNVSMNNITGGIPREIGNSSQLQA 470 (518)
Q Consensus 392 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~-~L~ls~n~l~~~~~~~~~~l~~L~~ 470 (518)
.+++|+++++++|+++.....+|.++++|+.+++.+| +....+..|.+|++|+ .+++.+ .++...+.+|.+|++|+.
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 3788888888888888777778888888888888887 6656677788888888 888887 666555677888888888
Q ss_pred EeCcCCcCcccCCccccCCCCCCEEEC
Q 037558 471 LDLSLNHIVGEIPKELGKLNSLTKLIL 497 (518)
Q Consensus 471 L~L~~n~l~~~~~~~l~~l~~L~~L~l 497 (518)
+++++|.+....+.+|.++++|+.++.
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEeCCCccCccchhhhcCCcchhhhcc
Confidence 888888888777778888888888763
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=8.3e-17 Score=156.29 Aligned_cols=99 Identities=15% Similarity=0.117 Sum_probs=57.5
Q ss_pred CCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCC-EEeCcCCcCcccCCccccCCCCCCEE
Q 037558 417 YPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQ-ALDLSLNHIVGEIPKELGKLNSLTKL 495 (518)
Q Consensus 417 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L 495 (518)
+++|+++++++|++....+..|.+|++|+.+++.+| +....+.+|.+|++|+ .+++.+ .+..+.+.+|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 566666666666665555555666666666666665 4433444566666666 666665 4554555566666666666
Q ss_pred ECcCCccccccCccCccCCCCC
Q 037558 496 ILRGNQRAVTLSFINKVCSSLE 517 (518)
Q Consensus 496 ~l~~n~~~~~ip~~l~~l~~L~ 517 (518)
++++|++..--+..+.++++|+
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSK 324 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCC
T ss_pred EeCCCccCccchhhhcCCcchh
Confidence 6666665433334556665554
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=2.3e-16 Score=137.26 Aligned_cols=137 Identities=20% Similarity=0.165 Sum_probs=102.6
Q ss_pred CCccEEecCCCcCc-cccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEE
Q 037558 370 GALEIFTVSENHFQ-GTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLN 448 (518)
Q Consensus 370 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 448 (518)
++++.|++++|.+. +.+|..+..+++|++|++++|++++. ..+..+++|++|++++|++.+.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 56777777777776 56666677778888888888887755 6677788888888888888766777776788888888
Q ss_pred ccCCccccCc-cccccCCCCCCEEeCcCCcCcccCC---ccccCCCCCCEEECcCCccccccCcc
Q 037558 449 VSMNNITGGI-PREIGNSSQLQALDLSLNHIVGEIP---KELGKLNSLTKLILRGNQRAVTLSFI 509 (518)
Q Consensus 449 ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~~n~~~~~ip~~ 509 (518)
+++|.+.+.. +..+..+++|++|++++|++.+..+ ..+..+++|++|++++|.+ .++|+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~-~~~~~~ 165 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED-QEAPDS 165 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS-CBCCSS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh-hhcccc
Confidence 8888887532 2667788888888888888885544 4677888888888888877 345543
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=3.3e-17 Score=175.29 Aligned_cols=218 Identities=17% Similarity=0.211 Sum_probs=123.4
Q ss_pred CCCcEEeCCCCCCcccCCccccCCCCCCEEEC-----CCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCC
Q 037558 107 PRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFI-----DTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHI 181 (518)
Q Consensus 107 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l-----~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L 181 (518)
+.++.|+|.++.+.. .+..+.....|+.+.+ +.|.+. ..|..+..+++|++|+|++|.+. .+|..+.++++|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 668889998887755 3333333333333333 334444 45777899999999999999998 788888899999
Q ss_pred CEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCC
Q 037558 182 SLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNEN 261 (518)
Q Consensus 182 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 261 (518)
++|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..++.+++|++|+|++|.++. +|..|+.+++|+.|++++|
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~-lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCC-CCSSTTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCc-cChhhhcCCCccEEeCCCC
Confidence 99999999999 78889999999999999999999 779999999999999999999974 7888999999999999999
Q ss_pred CCccCCcccccCCC-CCcEEEccCCcCcccCccccCCCCCccEEEccCC--------cccccCCccCcCCCCCCeeeccc
Q 037558 262 QFTGYIPRSFGNLT-SLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNEN--------QFKGVLPPSISNLTNLKELALLY 332 (518)
Q Consensus 262 ~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n--------~l~~~~~~~l~~l~~L~~L~l~~ 332 (518)
.+++.+|..+.... .+..+++++|.+++.+|.. |+.|+++.| .+.+..+..+..+..+....++.
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~ 400 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSY 400 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------------------------------------------
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeec
Confidence 99988887775432 2234788999998877754 455666665 23333333344555556666666
Q ss_pred cccc
Q 037558 333 NHLS 336 (518)
Q Consensus 333 n~l~ 336 (518)
|.+.
T Consensus 401 Nil~ 404 (727)
T 4b8c_D 401 NTLC 404 (727)
T ss_dssp -CCC
T ss_pred cccc
Confidence 6554
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=4.8e-16 Score=135.23 Aligned_cols=133 Identities=17% Similarity=0.137 Sum_probs=79.3
Q ss_pred CCCCcEEeCCCCCCc-ccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEE
Q 037558 106 FPRLAYLDLTGSGLF-GTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLL 184 (518)
Q Consensus 106 l~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L 184 (518)
.++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+.++++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 356677777777665 45666666666677777766666633 556666666666666666665455555556666666
Q ss_pred EccCccccccC-CccccCCCCCcEEEcccCcCCCCcc---hhccCCCCCcEEEcccCcCC
Q 037558 185 FIYDNLFSGFI-PSDIGNSKSIFNLDLSSNQFSGPIP---LFFGNLSNLKSLYLYGNSLS 240 (518)
Q Consensus 185 ~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l~~n~~~ 240 (518)
++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 66666665432 1455556666666666666554333 24555555555555555543
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=1.9e-15 Score=134.44 Aligned_cols=128 Identities=23% Similarity=0.276 Sum_probs=83.4
Q ss_pred EEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCc-cccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCC
Q 037558 87 ISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPP-EVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSN 165 (518)
Q Consensus 87 l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n 165 (518)
++++++++. .+|. .+. +++++|++++|.+.+..+. .+..+++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 13 l~~s~~~l~-~ip~-~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 13 VDCTGRGLK-EIPR-DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EECTTSCCS-SCCS-CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEcCCCCcC-cCcc-CCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 444444443 3443 222 2777777777777655443 3677777777777777777666677777777777777777
Q ss_pred CCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCC
Q 037558 166 YLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGP 218 (518)
Q Consensus 166 ~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 218 (518)
.+.+..+..+.++++|++|++++|++++..|..+..+++|++|++++|.+...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 77766666666677777777777777666666666666666666666666543
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.64 E-value=3.4e-16 Score=133.28 Aligned_cols=128 Identities=21% Similarity=0.189 Sum_probs=83.9
Q ss_pred CCccEEecCCCcCc-cccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEE
Q 037558 370 GALEIFTVSENHFQ-GTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLN 448 (518)
Q Consensus 370 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 448 (518)
++++.|++++|.+. +.+|..+..+++|++|++++|++++. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45566666666665 45555566666677777777766654 5566667777777777777665566566677777777
Q ss_pred ccCCccccC-ccccccCCCCCCEEeCcCCcCcccCC---ccccCCCCCCEEECcC
Q 037558 449 VSMNNITGG-IPREIGNSSQLQALDLSLNHIVGEIP---KELGKLNSLTKLILRG 499 (518)
Q Consensus 449 ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~l~~ 499 (518)
+++|++.+. .+..+..+++|++|++++|++.+..+ ..+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 777777642 23566777777777777777775544 4566777777777653
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=3.9e-16 Score=132.88 Aligned_cols=127 Identities=17% Similarity=0.134 Sum_probs=71.3
Q ss_pred CCCCcEEeCCCCCCc-ccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEE
Q 037558 106 FPRLAYLDLTGSGLF-GTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLL 184 (518)
Q Consensus 106 l~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L 184 (518)
.+++++|++++|.+. +.+|..+..+++|++|++++|.+++. ..++++++|++|++++|.+.+.+|..+.++++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 355666666666665 45565566666666666666666533 455566666666666666654455545555556666
Q ss_pred EccCcccccc-CCccccCCCCCcEEEcccCcCCCCcc---hhccCCCCCcEEEc
Q 037558 185 FIYDNLFSGF-IPSDIGNSKSIFNLDLSSNQFSGPIP---LFFGNLSNLKSLYL 234 (518)
Q Consensus 185 ~l~~n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~---~~l~~l~~L~~L~l 234 (518)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 6666555542 22445555555555555555554333 24444555555544
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.62 E-value=3.6e-15 Score=130.83 Aligned_cols=114 Identities=23% Similarity=0.233 Sum_probs=59.1
Q ss_pred CCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeC
Q 037558 394 TSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDL 473 (518)
Q Consensus 394 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L 473 (518)
++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 44555555555555444444455555555555555555444444455555555555555555444444455555555555
Q ss_pred cCCcCcccCCccccCCCCCCEEECcCCccccccC
Q 037558 474 SLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLS 507 (518)
Q Consensus 474 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip 507 (518)
++|++.+..+..+..+++|++|++++|++.+..|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 5555554333334555555555555555554433
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=4.4e-15 Score=132.07 Aligned_cols=127 Identities=18% Similarity=0.200 Sum_probs=75.2
Q ss_pred cEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccC
Q 037558 349 RELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRN 428 (518)
Q Consensus 349 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 428 (518)
+.+++++|.+.. +|..+. ++++.|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|+|++|
T Consensus 13 ~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 456666665553 332221 35666666666665 45556666666666666666666555556666666666666666
Q ss_pred ccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCc
Q 037558 429 NFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIV 479 (518)
Q Consensus 429 ~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 479 (518)
++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|++.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 666555555666666666666666666444444556666666666666554
No 131
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.61 E-value=5.1e-14 Score=140.12 Aligned_cols=328 Identities=11% Similarity=0.048 Sum_probs=169.5
Q ss_pred CccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCC
Q 037558 148 PPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLS 227 (518)
Q Consensus 148 p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~ 227 (518)
..+|.++.+|+.+.+..+ +...-..+|.++++|+.+++.++ +.......|.++.+|+.+.+..+ +.......|..+.
T Consensus 64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence 345667777777777543 44333455666777777776543 33334445566666665544432 2222223333332
Q ss_pred CCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEcc
Q 037558 228 NLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLN 307 (518)
Q Consensus 228 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 307 (518)
.++...... .......+|.++ ++|+.+.+.++. .......|.++++|+.+.+.
T Consensus 141 ~~~~~~~~~--~~~i~~~aF~~c------------------------~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~ 193 (394)
T 4fs7_A 141 FKEITIPEG--VTVIGDEAFATC------------------------ESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLP 193 (394)
T ss_dssp CSEEECCTT--CCEECTTTTTTC------------------------TTCCEEECCTTC-CEECTTTTTTCTTCCBCCCC
T ss_pred ccccccCcc--ccccchhhhccc------------------------CCCcEEecCCcc-ceeccccccCCCCceEEEcC
Confidence 222211111 111122334444 444444444332 11223344445555555544
Q ss_pred CCcccccCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccC
Q 037558 308 ENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIP 387 (518)
Q Consensus 308 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 387 (518)
.+ +.......+..+..|+.+.+..+... .....+....++.+.+... +.......+..+..++.+.+..+... ...
T Consensus 194 ~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~ 269 (394)
T 4fs7_A 194 RN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGG 269 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECS
T ss_pred CC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eec
Confidence 33 22222334445555555544433221 1111222244555554322 22222334555666777766655332 334
Q ss_pred hhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCC
Q 037558 388 TSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQ 467 (518)
Q Consensus 388 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~ 467 (518)
..+..+..++.+......+. ...+..+.+|+.+.+.++ +.......|.+|.+|+.+++.++ ++..-..+|.+|.+
T Consensus 270 ~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~ 344 (394)
T 4fs7_A 270 SLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTS 344 (394)
T ss_dssp CTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTT
T ss_pred cccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCC
Confidence 45666677777666554432 345667777777777654 44344556777777887777644 44333456777788
Q ss_pred CCEEeCcCCcCcccCCccccCCCCCCEEECcCCccccccCccCccCCCCC
Q 037558 468 LQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINKVCSSLE 517 (518)
Q Consensus 468 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip~~l~~l~~L~ 517 (518)
|+.+++..+ +..+...+|.+|++|+.+++..+ ...+..++.++++|+
T Consensus 345 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~--~~~~~~~F~~c~~L~ 391 (394)
T 4fs7_A 345 LSNINFPLS-LRKIGANAFQGCINLKKVELPKR--LEQYRYDFEDTTKFK 391 (394)
T ss_dssp CCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG--GGGGGGGBCTTCEEE
T ss_pred CCEEEECcc-ccEehHHHhhCCCCCCEEEECCC--CEEhhheecCCCCCc
Confidence 888877666 55555667777888888877644 234455666666664
No 132
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.60 E-value=1.8e-13 Score=136.09 Aligned_cols=155 Identities=10% Similarity=0.009 Sum_probs=77.2
Q ss_pred CCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCC
Q 037558 99 HGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNL 178 (518)
Q Consensus 99 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l 178 (518)
....|.++.+|+++.+..+ +...-..+|..+.+|+.+++.++ ++..-...|.++.+|+.+.+..+ +...-..+|.++
T Consensus 63 g~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~ 139 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGC 139 (394)
T ss_dssp CTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTC
T ss_pred HHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecc
Confidence 3336777778888887643 44334456777777777777644 33233445666777766655433 222223344444
Q ss_pred CCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcCCccccccccCCCCCCEeeC
Q 037558 179 SHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQL 258 (518)
Q Consensus 179 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 258 (518)
..++....... .......|.++++|+.+.+.++. .......|..+.+|+.+.+..+ +......+|.++..|+.+.+
T Consensus 140 ~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~ 215 (394)
T 4fs7_A 140 DFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEF 215 (394)
T ss_dssp CCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred cccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeec
Confidence 33222222211 11223345556666666654432 2233344555555555555443 33333344445555554444
Q ss_pred cC
Q 037558 259 NE 260 (518)
Q Consensus 259 ~~ 260 (518)
..
T Consensus 216 ~~ 217 (394)
T 4fs7_A 216 PN 217 (394)
T ss_dssp CT
T ss_pred CC
Confidence 33
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=1.9e-14 Score=126.23 Aligned_cols=136 Identities=17% Similarity=0.219 Sum_probs=93.8
Q ss_pred CCCccCceeeCCCCCEEEEEcCCCCCccccCCccCCCCCCCcEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCC
Q 037558 69 SPCAWYGISCNDAGRVINISLRNTGLSGTLHGFSFSSFPRLAYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIP 148 (518)
Q Consensus 69 ~~c~w~g~~c~~~~~v~~l~l~~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p 148 (518)
..|.|.++.|... ++. .+|. ...++|++|++++|.+.+..+..+..+++|++|++++|.+++..+
T Consensus 5 C~C~~~~l~~~~~-----------~l~-~~p~---~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 69 (177)
T 2o6r_A 5 CSCSGTEIRCNSK-----------GLT-SVPT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD 69 (177)
T ss_dssp CEEETTEEECCSS-----------CCS-SCCT---TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred CEeCCCEEEecCC-----------CCc-cCCC---CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeCh
Confidence 3467888777532 222 1222 223678888888888876666667788888888888888875555
Q ss_pred ccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCccccCCCCCcEEEcccCcCCCCc
Q 037558 149 PEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQFSGPI 219 (518)
Q Consensus 149 ~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 219 (518)
..++++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+..
T Consensus 70 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 70 GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred hHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 55677888888888888877655555677777777777777777655555666777777777777766543
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.58 E-value=2.1e-13 Score=135.22 Aligned_cols=240 Identities=13% Similarity=0.079 Sum_probs=119.4
Q ss_pred CCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEcc
Q 037558 228 NLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLN 307 (518)
Q Consensus 228 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~ 307 (518)
+|+.+.+..+ ++.....+|.++ +|+.+.+.. .+....+..|.++++|+.+++.+|.++......|. +.+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence 4555555433 333333444443 455555543 34433444555566666666666555533333333 4566666665
Q ss_pred CCcccccCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccC
Q 037558 308 ENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIP 387 (518)
Q Consensus 308 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 387 (518)
.+ +.......|.++++|+.+.+..+ ++..-...|....|+.+.+. +.+...-..
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp-~~i~~I~~~----------------------- 265 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLP-NGVTNIASR----------------------- 265 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEE-TTCCEECTT-----------------------
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeC-CCccEEChh-----------------------
Confidence 33 44344455666666666666543 22222223333444444442 222222233
Q ss_pred hhhhcCCCCcEEEcccCccc-----cccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccc
Q 037558 388 TSVRNCTSLIRVHLNGNNLT-----GNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREI 462 (518)
Q Consensus 388 ~~~~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~ 462 (518)
.|..|++|+.+.+.++.+. .....+|.+|++|+.+++.+ .+.......|.+|++|+.+.+..+ +......+|
T Consensus 266 -aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF 342 (401)
T 4fdw_A 266 -AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF 342 (401)
T ss_dssp -TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSS
T ss_pred -HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC
Confidence 3444444444444444332 23344555666666666653 344344455666666666666443 443334456
Q ss_pred cCCCCCCEEeCcCCcCcccCCccccCCC-CCCEEECcCCc
Q 037558 463 GNSSQLQALDLSLNHIVGEIPKELGKLN-SLTKLILRGNQ 501 (518)
Q Consensus 463 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~ 501 (518)
.++ +|+.+++++|.+.......+.+++ .++.|.+..+.
T Consensus 343 ~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 343 NNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp SSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 666 666666666655544445555553 55666655544
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=2e-14 Score=127.79 Aligned_cols=126 Identities=22% Similarity=0.308 Sum_probs=68.7
Q ss_pred cEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCc
Q 037558 110 AYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDN 189 (518)
Q Consensus 110 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n 189 (518)
+.++++++.+. .+|..+ .++|++|++++|.++ .+|..+.++++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 35666666553 344333 245666666666665 45555566666666666666665444455555555555555555
Q ss_pred cccccCCccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEcccCcC
Q 037558 190 LFSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYLYGNSL 239 (518)
Q Consensus 190 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 239 (518)
.+++..+..|..+++|++|++++|.++...+..+..+++|+.|++++|.+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 55555555555555555555555555543333444555555555555544
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.55 E-value=6e-13 Score=131.94 Aligned_cols=252 Identities=15% Similarity=0.154 Sum_probs=162.1
Q ss_pred CCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEE
Q 037558 226 LSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLD 305 (518)
Q Consensus 226 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~ 305 (518)
+..++.+.+.. .++.....+|.++ +|+.+.+..+ ++......|.+ .+|+.+.+.+ .+....+.+|.+|++|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 35555565543 2344344455553 4666665443 33333334444 2455555554 23333334455555555555
Q ss_pred ccCCcccccCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccc
Q 037558 306 LNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGT 385 (518)
Q Consensus 306 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 385 (518)
+.+|.+... ....+....|+.+.+..+ +...-...|.++.+|+.+++.++ ++..
T Consensus 187 l~~n~l~~I------------------------~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I 240 (401)
T 4fdw_A 187 LSKTKITKL------------------------PASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTI 240 (401)
T ss_dssp CTTSCCSEE------------------------CTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEE
T ss_pred cCCCcceEe------------------------chhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCc
Confidence 555544422 222333344555555422 44444556777888888888765 3433
Q ss_pred cChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccc-----cccCccccCCCCCCEEEccCCccccCccc
Q 037558 386 IPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFY-----GEISSNWGKCPKLDTLNVSMNNITGGIPR 460 (518)
Q Consensus 386 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~~~~~~~~~~L~~L~ls~n~l~~~~~~ 460 (518)
-...|.. .+|+.+.+. +.++.....+|.++++|+.+++.++.+. ...+..|.+|++|+.+++.+ .+...-..
T Consensus 241 ~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~ 317 (401)
T 4fdw_A 241 GQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQG 317 (401)
T ss_dssp CTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTT
T ss_pred ccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhh
Confidence 3445555 789999994 5567677789999999999999998775 35567899999999999995 47655567
Q ss_pred cccCCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCccccccCccCccC
Q 037558 461 EIGNSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQRAVTLSFINKVC 513 (518)
Q Consensus 461 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ip~~l~~l 513 (518)
.|.+|++|+.+++..+ +..+...+|.++ +|+.+++.+|....-.+..+..+
T Consensus 318 aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 318 LLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp TTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred hhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence 8999999999999665 666777889999 99999999998765444455555
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=1.3e-14 Score=127.14 Aligned_cols=134 Identities=10% Similarity=0.056 Sum_probs=95.0
Q ss_pred hcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCC
Q 037558 366 ICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLD 445 (518)
Q Consensus 366 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 445 (518)
+..+.+|+.|++++|.+. .++......++|++|++++|++++. ..+..+++|++|++++|++++..+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 344556777777777766 3343333334788888888887764 5677778888888888888755445557788888
Q ss_pred EEEccCCccccCccc--cccCCCCCCEEeCcCCcCcccCCcc----ccCCCCCCEEECcCCcccc
Q 037558 446 TLNVSMNNITGGIPR--EIGNSSQLQALDLSLNHIVGEIPKE----LGKLNSLTKLILRGNQRAV 504 (518)
Q Consensus 446 ~L~ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~l~~n~~~~ 504 (518)
+|++++|++. .+|. .+..+++|+.|++++|++. .+|.. +..+++|++||+++|....
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 8888888886 4554 6777888888888888887 44553 7788888888888887643
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=6.9e-14 Score=122.49 Aligned_cols=61 Identities=16% Similarity=0.167 Sum_probs=25.5
Q ss_pred CCCCCCcEEeCCCCCCcccCCccccCCC-CCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCC
Q 037558 104 SSFPRLAYLDLTGSGLFGTIPPEVGLLS-HLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLN 168 (518)
Q Consensus 104 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~ 168 (518)
..+++|++|++++|.+.. ++. +..+. +|++|++++|.+++. ..++++++|++|++++|.+.
T Consensus 16 ~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~ 77 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC 77 (176)
T ss_dssp ECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC
T ss_pred CCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc
Confidence 344445555555554432 222 22222 444444444444422 33444444444444444443
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=6.6e-16 Score=138.24 Aligned_cols=133 Identities=23% Similarity=0.208 Sum_probs=101.1
Q ss_pred hhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCC
Q 037558 365 NICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKL 444 (518)
Q Consensus 365 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 444 (518)
.+..+++|+.|++++|.+.+ +| .+..+++|++|++++|+++ .+|..+..+++|++|++++|++.+. | .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCCCC
Confidence 67777888888888888775 56 7778888888888888887 4566667778888888888888753 3 46778888
Q ss_pred CEEEccCCccccCcc-ccccCCCCCCEEeCcCCcCcccCCcc----------ccCCCCCCEEECcCCcccc
Q 037558 445 DTLNVSMNNITGGIP-REIGNSSQLQALDLSLNHIVGEIPKE----------LGKLNSLTKLILRGNQRAV 504 (518)
Q Consensus 445 ~~L~ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~----------l~~l~~L~~L~l~~n~~~~ 504 (518)
++|++++|++.+..+ ..+..+++|++|++++|++.+..|.. +..+++|+.|| +|++..
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 888888888874222 46778888888888888887665542 67788888886 666543
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=5.7e-16 Score=138.68 Aligned_cols=146 Identities=24% Similarity=0.266 Sum_probs=120.6
Q ss_pred cCCCCccEEecCCCcCccccCh------hhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccC
Q 037558 367 CQGGALEIFTVSENHFQGTIPT------SVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGK 440 (518)
Q Consensus 367 ~~~~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~ 440 (518)
.....++.++++.+.+.|..|. .+..+++|++|++++|++++ ++ .+..+++|++|++++|.+. .+|..+..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 3344566666666666666655 89999999999999999997 55 8899999999999999998 56777777
Q ss_pred CCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCC-ccccCCCCCCEEECcCCccccccCcc----------
Q 037558 441 CPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIP-KELGKLNSLTKLILRGNQRAVTLSFI---------- 509 (518)
Q Consensus 441 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~ip~~---------- 509 (518)
+++|++|++++|++.+ +| .+..+++|++|++++|++.+..+ ..+..+++|++|++++|++.+.+|..
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred CCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence 8999999999999995 55 68889999999999999985432 47889999999999999998887753
Q ss_pred CccCCCCC
Q 037558 510 NKVCSSLE 517 (518)
Q Consensus 510 l~~l~~L~ 517 (518)
+..++.|+
T Consensus 170 ~~~l~~L~ 177 (198)
T 1ds9_A 170 VKRLPNLK 177 (198)
T ss_dssp HHHCSSCS
T ss_pred HHhCCCcE
Confidence 56666664
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.44 E-value=5.2e-13 Score=116.02 Aligned_cols=107 Identities=19% Similarity=0.132 Sum_probs=77.3
Q ss_pred ccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccC
Q 037558 372 LEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSM 451 (518)
Q Consensus 372 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~ 451 (518)
.+.+++++|.++ .+|..+ .++|++|++++|++++..+..+..+++|++|+|++|++++..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 457778887776 455544 36777788888877777777777777777777777777766666667777777777777
Q ss_pred CccccCccccccCCCCCCEEeCcCCcCccc
Q 037558 452 NNITGGIPREIGNSSQLQALDLSLNHIVGE 481 (518)
Q Consensus 452 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 481 (518)
|++.+..+..|..+++|++|+|++|++...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 777755555677777777777777777643
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=1.4e-12 Score=113.77 Aligned_cols=105 Identities=17% Similarity=0.185 Sum_probs=81.6
Q ss_pred cEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCC
Q 037558 373 EIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMN 452 (518)
Q Consensus 373 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n 452 (518)
+.+++++|.+. .+|..+. ++|++|++++|++++..+..+..+++|++|+|++|++++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 57888888876 5666553 78888888888888777888888888888888888888665666777888888888888
Q ss_pred ccccCccccccCCCCCCEEeCcCCcCcc
Q 037558 453 NITGGIPREIGNSSQLQALDLSLNHIVG 480 (518)
Q Consensus 453 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 480 (518)
++.+..+..|..+++|+.|++++|++..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 8885555557788888888888888763
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.40 E-value=7e-11 Score=117.39 Aligned_cols=331 Identities=11% Similarity=0.086 Sum_probs=175.5
Q ss_pred CccCCCCC-CCcEEEccCCCCCccCCcCCcCCCCCCEEEccCcc---ccccCCccccCCCCCcEEEcccCcCCCCcchhc
Q 037558 148 PPEVGQLS-SMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNL---FSGFIPSDIGNSKSIFNLDLSSNQFSGPIPLFF 223 (518)
Q Consensus 148 p~~l~~l~-~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~---~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l 223 (518)
...|.++. .|+.+.+..+ ++..-..+|.++.+|+.+.+..+. ++.....+|..+.+|+.+.+..+ ++......|
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 34466664 5788777643 443445667777788887776653 44444555666777776665543 333344456
Q ss_pred cCCCCCcEEEcccCcCCccccccccCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccE
Q 037558 224 GNLSNLKSLYLYGNSLSSPILSSLGKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSV 303 (518)
Q Consensus 224 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~ 303 (518)
..+.+|+.+.+..+ +.......|..+..|+.+.+..+ ++......|. ..+|+.+.+..+.. ......+..+.+++.
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~c~~l~~ 209 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFSECFALST 209 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTTTTTCTTCCE
T ss_pred hhhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccchhhhccccce
Confidence 66666777666532 33333455566666666666543 2222222332 24566666554322 233344555555555
Q ss_pred EEccCCcccccCCccCcCCCCCCeeecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCc
Q 037558 304 LDLNENQFKGVLPPSISNLTNLKELALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQ 383 (518)
Q Consensus 304 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 383 (518)
...............+........-.. .......+..+.+. +.+...-...|.++..|+.+.+.++...
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~~ 278 (394)
T 4gt6_A 210 ITSDSESYPAIDNVLYEKSANGDYALI----------RYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVVS 278 (394)
T ss_dssp EEECCSSSCBSSSCEEEECTTSCEEEE----------ECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCCE
T ss_pred ecccccccccccceeeccccccccccc----------ccccccccceEEcC-CcceEcccceeeecccccEEecccccce
Confidence 554433322110000000000000000 00000122223222 1122233446677778888887665432
Q ss_pred cccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCcccccc
Q 037558 384 GTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIG 463 (518)
Q Consensus 384 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~ 463 (518)
.....|..+++|+.+.+. +.++.....+|.++.+|+.++|.++ ++......|.+|.+|+.+.+..+ ++..-..+|.
T Consensus 279 -I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~ 354 (394)
T 4gt6_A 279 -IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFS 354 (394)
T ss_dssp -ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGT
T ss_pred -ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhh
Confidence 344566778888888885 3455555677888888888888754 44445667888888888888654 5544456788
Q ss_pred CCCCCCEEeCcCCcCcccCCccccCCCCCCEEECcCCcc
Q 037558 464 NSSQLQALDLSLNHIVGEIPKELGKLNSLTKLILRGNQR 502 (518)
Q Consensus 464 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 502 (518)
+|.+|+.+++.++.... ..+..+..|+.+.+..+.+
T Consensus 355 ~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 355 NCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 88888888888775431 3566677788877766544
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=2.6e-12 Score=111.54 Aligned_cols=104 Identities=19% Similarity=0.279 Sum_probs=53.6
Q ss_pred cEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCc
Q 037558 110 AYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDN 189 (518)
Q Consensus 110 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n 189 (518)
++++++++.+.. +|..+ .++|++|++++|.+++..|..|.++++|++|++++|.+.+..+..|.++++|++|++++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 455666655532 34333 255555555555555444555555555555555555555433334455555555555555
Q ss_pred cccccCCccccCCCCCcEEEcccCcCC
Q 037558 190 LFSGFIPSDIGNSKSIFNLDLSSNQFS 216 (518)
Q Consensus 190 ~~~~~~~~~~~~~~~L~~L~l~~n~~~ 216 (518)
.+++..+..+..+++|++|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 555444444455555555555555444
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.38 E-value=4.3e-12 Score=110.55 Aligned_cols=104 Identities=17% Similarity=0.306 Sum_probs=57.6
Q ss_pred cEEeCCCCCCcccCCccccCCCCCCEEECCCCCCCcCCCccCCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCc
Q 037558 110 AYLDLTGSGLFGTIPPEVGLLSHLKFLFIDTNKLDGSIPPEVGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDN 189 (518)
Q Consensus 110 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n 189 (518)
+.++++++.+ +.+|..+. ++|++|++++|.+++..|..|+++++|++|+|++|.+.+..+..|.++++|++|++++|
T Consensus 15 ~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 4566666665 34444432 55666666666666555555666666666666666665433333455555555555555
Q ss_pred cccccCCccccCCCCCcEEEcccCcCC
Q 037558 190 LFSGFIPSDIGNSKSIFNLDLSSNQFS 216 (518)
Q Consensus 190 ~~~~~~~~~~~~~~~L~~L~l~~n~~~ 216 (518)
++.+..+..+..+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 555444444555555555555555544
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=3.7e-13 Score=132.18 Aligned_cols=183 Identities=18% Similarity=0.195 Sum_probs=115.0
Q ss_pred CCCCCeeecccccccccCCccc----c-c-ccCcEEEccCccCcccCchhh-cCCCCccEEecCCCcCccccChhh----
Q 037558 322 LTNLKELALLYNHLSGSIPPSL----G-N-LILRELLLSGNHFAGYLPYNI-CQGGALEIFTVSENHFQGTIPTSV---- 390 (518)
Q Consensus 322 l~~L~~L~l~~n~l~~~~p~~~----~-~-~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~---- 390 (518)
.+.|+.|++++|.++......+ . . ..|+.|++++|.+.......+ ..+++|+.|++++|.+++.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3578888888888764322221 1 1 478888888888765433222 234578888888887765433333
Q ss_pred -hcCCCCcEEEcccCccccc----cChhhhCCCCCCEEecccCccccc----cCccccCCCCCCEEEccCCccccC----
Q 037558 391 -RNCTSLIRVHLNGNNLTGN----ISEALAIYPNLTFIDLSRNNFYGE----ISSNWGKCPKLDTLNVSMNNITGG---- 457 (518)
Q Consensus 391 -~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~ls~n~l~~~---- 457 (518)
...++|++|+|++|.+++. ++..+..+++|++|+|++|.+.+. +...+...++|++|++++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2357788888888887643 344556778888888888887643 244556677888888888888652
Q ss_pred ccccccCCCCCCEEeCcCCcCcccCCccccCC---C--CCCEEE--CcCCcccc
Q 037558 458 IPREIGNSSQLQALDLSLNHIVGEIPKELGKL---N--SLTKLI--LRGNQRAV 504 (518)
Q Consensus 458 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l---~--~L~~L~--l~~n~~~~ 504 (518)
++..+...++|++|+|++|++.+.....+..+ . .|+.+. +.+|.+..
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence 33444566788888888888876555544332 1 166666 66666643
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.28 E-value=1.1e-09 Score=108.78 Aligned_cols=311 Identities=13% Similarity=0.135 Sum_probs=206.1
Q ss_pred CcCCcCCC-CCCEEEccCccccccCCccccCCCCCcEEEcccCc---CCCCcchhccCCCCCcEEEcccCcCCccccccc
Q 037558 172 PPSLGNLS-HISLLFIYDNLFSGFIPSDIGNSKSIFNLDLSSNQ---FSGPIPLFFGNLSNLKSLYLYGNSLSSPILSSL 247 (518)
Q Consensus 172 p~~l~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~---~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l 247 (518)
..+|.++. .|+.+.+..+ ++.....+|.++.+|+.+.+..+. ++.....+|..+.+|+.+.+..+ ++.....+|
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 45677764 5899988754 565667788899999999988764 44445567888888888777644 455455677
Q ss_pred cCCCCCCEeeCcCCCCccCCcccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccCCcccccCCccCcCCCCCCe
Q 037558 248 GKFKSLIDLQLNENQFTGYIPRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNENQFKGVLPPSISNLTNLKE 327 (518)
Q Consensus 248 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 327 (518)
..+.+|+.+.+..+ +.......+..+.+|+.+.+..+ +...-..+|. ...|+.+.+..+... .....+..+.+++.
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~ 209 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALST 209 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCE
T ss_pred hhhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhhccccce
Confidence 88888888888643 33344556777888888888765 3323334444 356888877655433 44456677777777
Q ss_pred eecccccccccCCcccccccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccc
Q 037558 328 LALLYNHLSGSIPPSLGNLILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLT 407 (518)
Q Consensus 328 L~l~~n~l~~~~p~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 407 (518)
......... .....+.. .+.........+.....+..+.+.+. +...-...|..+..|+.+.+.++...
T Consensus 210 ~~~~~~~~~-~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~ 278 (394)
T 4gt6_A 210 ITSDSESYP-AIDNVLYE---------KSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVS 278 (394)
T ss_dssp EEECCSSSC-BSSSCEEE---------ECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCE
T ss_pred ecccccccc-cccceeec---------ccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccce
Confidence 766554332 11111111 00000000001122234444544432 22233456788999999999776443
Q ss_pred cccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCcccc
Q 037558 408 GNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELG 487 (518)
Q Consensus 408 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 487 (518)
....++.++++|+.+.+. +.+.......|.+|.+|+.+++.++ ++..-..+|.+|.+|+.+.+..+ +..+...+|.
T Consensus 279 -I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~ 354 (394)
T 4gt6_A 279 -IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFS 354 (394)
T ss_dssp -ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGT
T ss_pred -ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhh
Confidence 556788999999999996 4455456678999999999999865 55344567999999999999755 6656677899
Q ss_pred CCCCCCEEECcCCccc
Q 037558 488 KLNSLTKLILRGNQRA 503 (518)
Q Consensus 488 ~l~~L~~L~l~~n~~~ 503 (518)
+|++|+.+++.++...
T Consensus 355 ~C~~L~~i~~~~~~~~ 370 (394)
T 4gt6_A 355 NCTALNNIEYSGSRSQ 370 (394)
T ss_dssp TCTTCCEEEESSCHHH
T ss_pred CCCCCCEEEECCceee
Confidence 9999999999988653
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=4.6e-13 Score=131.47 Aligned_cols=134 Identities=13% Similarity=0.137 Sum_probs=78.3
Q ss_pred cCcEEEccCccCcccCchhh-----cCCCCccEEecCCCcCccc----cChhhhcCCCCcEEEcccCccccc----cChh
Q 037558 347 ILRELLLSGNHFAGYLPYNI-----CQGGALEIFTVSENHFQGT----IPTSVRNCTSLIRVHLNGNNLTGN----ISEA 413 (518)
Q Consensus 347 ~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~ 413 (518)
+++.|++++|.+.......+ ...++|+.|++++|.+++. ++..+..+++|++|+|++|++++. +...
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 34455555554443322222 2345677777777776532 334446677888888888887753 2455
Q ss_pred hhCCCCCCEEecccCccccc----cCccccCCCCCCEEEccCCccccCccccccCC---CC--CCEEe--CcCCcCcc
Q 037558 414 LAIYPNLTFIDLSRNNFYGE----ISSNWGKCPKLDTLNVSMNNITGGIPREIGNS---SQ--LQALD--LSLNHIVG 480 (518)
Q Consensus 414 l~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l---~~--L~~L~--L~~n~l~~ 480 (518)
+...++|++|+|++|.+++. +...+..+++|++|++++|.+.+.....+..+ .. |+.+. +..+.+..
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence 66777888888888888653 23344556788888888888875444434322 21 66666 66666543
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.15 E-value=1.1e-10 Score=113.96 Aligned_cols=104 Identities=16% Similarity=0.168 Sum_probs=88.9
Q ss_pred EEecCCC-cCccccChhhhcCCCCcEEEccc-CccccccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccC
Q 037558 374 IFTVSEN-HFQGTIPTSVRNCTSLIRVHLNG-NNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSM 451 (518)
Q Consensus 374 ~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~ 451 (518)
.++++++ .++ .+|. +..+++|++|+|++ |++++..+..|..+++|+.|+|++|++++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4678887 787 5777 88899999999996 999988888899999999999999999988888899999999999999
Q ss_pred CccccCccccccCCCCCCEEeCcCCcCcc
Q 037558 452 NNITGGIPREIGNSSQLQALDLSLNHIVG 480 (518)
Q Consensus 452 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 480 (518)
|++.+..+..+..++ |+.|+|.+|++..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 999865555566555 9999999998873
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.13 E-value=1.7e-10 Score=112.58 Aligned_cols=105 Identities=17% Similarity=0.131 Sum_probs=90.9
Q ss_pred cEEEccCc-cCcccCchhhcCCCCccEEecCC-CcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecc
Q 037558 349 RELLLSGN-HFAGYLPYNICQGGALEIFTVSE-NHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLS 426 (518)
Q Consensus 349 ~~L~l~~n-~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 426 (518)
..++.+++ .+.+ +|. +..+.+|+.|+|++ |.+.+..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35677877 6665 676 88889999999996 99998777889999999999999999999999999999999999999
Q ss_pred cCccccccCccccCCCCCCEEEccCCcccc
Q 037558 427 RNNFYGEISSNWGKCPKLDTLNVSMNNITG 456 (518)
Q Consensus 427 ~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~ 456 (518)
+|++.+..+..+..++ |+.|++.+|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999976666666665 9999999999874
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.11 E-value=1.8e-08 Score=99.32 Aligned_cols=142 Identities=12% Similarity=0.079 Sum_probs=87.9
Q ss_pred ccCcEEEccCccCcccCchhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEec
Q 037558 346 LILRELLLSGNHFAGYLPYNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDL 425 (518)
Q Consensus 346 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 425 (518)
..++.+.+..+ +.......+..+..|+.+.+..+ ++..-...+..+.+|+.+.+..+ +......+|.++++|+.+.+
T Consensus 217 ~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l 293 (379)
T 4h09_A 217 KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVM 293 (379)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEE
T ss_pred cccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccc
Confidence 44555555432 23333445566677777777654 33333455667777777777543 44445567777788888888
Q ss_pred ccCccccccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCcccCCccccCCCCC
Q 037558 426 SRNNFYGEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIVGEIPKELGKLNSL 492 (518)
Q Consensus 426 ~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 492 (518)
.++.+.......|.+|.+|+.+.+..+ ++..-..+|.+|.+|+.+.+..+ +..+...+|.++..+
T Consensus 294 ~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 294 DNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred cccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 777776555667777888888888654 44333456777888888777654 444445566665433
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.98 E-value=1.7e-07 Score=92.34 Aligned_cols=100 Identities=14% Similarity=0.148 Sum_probs=64.6
Q ss_pred hhhcCCCCccEEecCCCcCccccChhhhcCCCCcEEEcccCccccccChhhhCCCCCCEEecccCccccccCccccCCCC
Q 037558 364 YNICQGGALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPK 443 (518)
Q Consensus 364 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 443 (518)
..+.++.+|+.+.+..+ +.......|..|.+|+.+.+.++.++.....+|.++.+|+.+.|..+ +.......|.+|++
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 334 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKA 334 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred cccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCC
Confidence 44555666666666543 33233345667788888888777777666677888888888888654 44444567788888
Q ss_pred CCEEEccCCccccCccccccCCC
Q 037558 444 LDTLNVSMNNITGGIPREIGNSS 466 (518)
Q Consensus 444 L~~L~ls~n~l~~~~~~~~~~l~ 466 (518)
|+.+.+..+ ++..-..+|.+++
T Consensus 335 L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 335 LSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CCCCCCCTT-CCEECTTTTTTSS
T ss_pred CCEEEECCc-cCEEchhHhhCCC
Confidence 888887654 4433345566654
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.94 E-value=2.8e-10 Score=110.70 Aligned_cols=58 Identities=12% Similarity=0.030 Sum_probs=28.0
Q ss_pred CCCCCCCcEEEccCCCCCccCCcCCcCCCCCCEEEccCccccccCCcccc--CCCCCcEEEcc
Q 037558 151 VGQLSSMEVFFLCSNYLNGSVPPSLGNLSHISLLFIYDNLFSGFIPSDIG--NSKSIFNLDLS 211 (518)
Q Consensus 151 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~l~ 211 (518)
+..+|+|+.|++++|.-. .++. +. +++|++|++..|.+.......+. .+++|++|+|+
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 344556666666555211 1222 22 55666666665555433222222 45666666654
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.88 E-value=1.3e-09 Score=106.12 Aligned_cols=59 Identities=25% Similarity=0.425 Sum_probs=27.9
Q ss_pred CCCCCEEEccCCccccC----ccccccCCCCCCEEeCcCCcCcccCCccccC-CCCCCEEECcCCc
Q 037558 441 CPKLDTLNVSMNNITGG----IPREIGNSSQLQALDLSLNHIVGEIPKELGK-LNSLTKLILRGNQ 501 (518)
Q Consensus 441 ~~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~-l~~L~~L~l~~n~ 501 (518)
+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.+++.....+.. + ...+++++++
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 45555555555555432 2222234455666666666555433333332 2 2345555554
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.67 E-value=9.1e-09 Score=90.28 Aligned_cols=115 Identities=20% Similarity=0.194 Sum_probs=69.7
Q ss_pred hhhcCCCCcEEEcccC-ccccc----cChhhhCCCCCCEEecccCccccc----cCccccCCCCCCEEEccCCccccC--
Q 037558 389 SVRNCTSLIRVHLNGN-NLTGN----ISEALAIYPNLTFIDLSRNNFYGE----ISSNWGKCPKLDTLNVSMNNITGG-- 457 (518)
Q Consensus 389 ~~~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~ls~n~l~~~-- 457 (518)
.+...+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|++++|.+.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3445566666666666 65532 234445556677777777766532 223344456677777777777642
Q ss_pred --ccccccCCCCCCEEeC--cCCcCcccC----CccccCCCCCCEEECcCCccc
Q 037558 458 --IPREIGNSSQLQALDL--SLNHIVGEI----PKELGKLNSLTKLILRGNQRA 503 (518)
Q Consensus 458 --~~~~~~~l~~L~~L~L--~~n~l~~~~----~~~l~~l~~L~~L~l~~n~~~ 503 (518)
+...+...+.|++|+| ++|.+.... ...+...+.|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3445566677777777 677776542 334445677888888877764
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.51 E-value=5.2e-08 Score=85.43 Aligned_cols=116 Identities=11% Similarity=0.149 Sum_probs=82.2
Q ss_pred hhhcCCCCccEEecCCC-cCccc----cChhhhcCCCCcEEEcccCccccc----cChhhhCCCCCCEEecccCccccc-
Q 037558 364 YNICQGGALEIFTVSEN-HFQGT----IPTSVRNCTSLIRVHLNGNNLTGN----ISEALAIYPNLTFIDLSRNNFYGE- 433 (518)
Q Consensus 364 ~~~~~~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~- 433 (518)
..+...+.|+.|++++| .+... +...+...++|++|+|++|++.+. +...+...++|++|+|++|.+...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34555667777777777 66532 334455677888888888888753 344556667888888888888754
Q ss_pred ---cCccccCCCCCCEEEc--cCCccccC----ccccccCCCCCCEEeCcCCcCc
Q 037558 434 ---ISSNWGKCPKLDTLNV--SMNNITGG----IPREIGNSSQLQALDLSLNHIV 479 (518)
Q Consensus 434 ---~~~~~~~~~~L~~L~l--s~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~ 479 (518)
+...+...++|++|++ ++|.+... +...+...++|++|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3455667788999999 78888753 3445566788999999999875
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.43 E-value=4.5e-08 Score=90.24 Aligned_cols=80 Identities=29% Similarity=0.381 Sum_probs=51.3
Q ss_pred hCCCCCCEEecccCcccc--ccCccccCCCCCCEEEccCCccccCccccccCCC--CCCEEeCcCCcCcccCCc------
Q 037558 415 AIYPNLTFIDLSRNNFYG--EISSNWGKCPKLDTLNVSMNNITGGIPREIGNSS--QLQALDLSLNHIVGEIPK------ 484 (518)
Q Consensus 415 ~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~------ 484 (518)
..+++|++|+|++|++.+ .++..+..+++|+.|+|++|++.+. ..+..+. +|++|+|++|++.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 456677777777777765 3345555677777777777777643 2233333 777888888877765552
Q ss_pred -cccCCCCCCEEE
Q 037558 485 -ELGKLNSLTKLI 496 (518)
Q Consensus 485 -~l~~l~~L~~L~ 496 (518)
.+..+|+|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 356677887765
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.27 E-value=2e-07 Score=85.85 Aligned_cols=82 Identities=24% Similarity=0.276 Sum_probs=60.9
Q ss_pred hcCCCCcEEEcccCcccc--ccChhhhCCCCCCEEecccCccccc-cCccccCCCCCCEEEccCCccccCcc-------c
Q 037558 391 RNCTSLIRVHLNGNNLTG--NISEALAIYPNLTFIDLSRNNFYGE-ISSNWGKCPKLDTLNVSMNNITGGIP-------R 460 (518)
Q Consensus 391 ~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~ls~n~l~~~~~-------~ 460 (518)
..+++|++|+|++|++++ .++..+..+++|+.|+|++|++.+. ....+..+ +|++|++++|.+.+.+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 467888889999998887 4456677888999999999988865 11223333 89999999999886554 2
Q ss_pred cccCCCCCCEEeC
Q 037558 461 EIGNSSQLQALDL 473 (518)
Q Consensus 461 ~~~~l~~L~~L~L 473 (518)
.+..+++|+.||=
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 3567888888863
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.27 E-value=2.1e-07 Score=79.48 Aligned_cols=85 Identities=8% Similarity=-0.043 Sum_probs=55.2
Q ss_pred CCCCcEEEcccCccccccChhhhCCCCCCEEecccCc-cccccCccccCC----CCCCEEEccCCc-cccCccccccCCC
Q 037558 393 CTSLIRVHLNGNNLTGNISEALAIYPNLTFIDLSRNN-FYGEISSNWGKC----PKLDTLNVSMNN-ITGGIPREIGNSS 466 (518)
Q Consensus 393 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~----~~L~~L~ls~n~-l~~~~~~~~~~l~ 466 (518)
-..|+.|++++|.+++.-...+..+++|++|+|++|. +++..-..+..+ ++|++|++++|. +++.--..+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3567888888888776655666777777777777774 554433334432 467777777764 5544444456677
Q ss_pred CCCEEeCcCCc
Q 037558 467 QLQALDLSLNH 477 (518)
Q Consensus 467 ~L~~L~L~~n~ 477 (518)
+|+.|++++|+
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 77777777774
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.23 E-value=3.8e-07 Score=77.91 Aligned_cols=84 Identities=7% Similarity=-0.003 Sum_probs=45.5
Q ss_pred CCccEEecCCCcCccccChhhhcCCCCcEEEcccCc-cccccChhhhCC----CCCCEEecccCc-cccccCccccCCCC
Q 037558 370 GALEIFTVSENHFQGTIPTSVRNCTSLIRVHLNGNN-LTGNISEALAIY----PNLTFIDLSRNN-FYGEISSNWGKCPK 443 (518)
Q Consensus 370 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~~~~~~~~~ 443 (518)
.+|+.|++++|.++..-...+..+++|++|+|++|. +++.-...+..+ ++|++|+|++|. ++...-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356666666665554444445556666666666663 554433444442 356666666653 54433334455566
Q ss_pred CCEEEccCCc
Q 037558 444 LDTLNVSMNN 453 (518)
Q Consensus 444 L~~L~ls~n~ 453 (518)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666666654
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.53 E-value=5e-05 Score=66.07 Aligned_cols=110 Identities=15% Similarity=0.124 Sum_probs=52.8
Q ss_pred CCCCcEEEcccC-ccccc----cChhhhCCCCCCEEecccCcccccc----CccccCCCCCCEEEccCCccccC----cc
Q 037558 393 CTSLIRVHLNGN-NLTGN----ISEALAIYPNLTFIDLSRNNFYGEI----SSNWGKCPKLDTLNVSMNNITGG----IP 459 (518)
Q Consensus 393 l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~ls~n~l~~~----~~ 459 (518)
-+.|+.|+|+++ +|.+. +.+.+..-..|+.|+|++|++.... ...+..-+.|++|+|+.|.|.+. +.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 344555555543 44421 2334444455555555555554321 22233345566666666665532 22
Q ss_pred ccccCCCCCCEEeCcCC---cCcc----cCCccccCCCCCCEEECcCCcc
Q 037558 460 REIGNSSQLQALDLSLN---HIVG----EIPKELGKLNSLTKLILRGNQR 502 (518)
Q Consensus 460 ~~~~~l~~L~~L~L~~n---~l~~----~~~~~l~~l~~L~~L~l~~n~~ 502 (518)
..+..-+.|++|+|++| .+.. .+...+..-+.|++|+++.|..
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 33444455666666544 2222 1223344456666666665553
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.32 E-value=0.00015 Score=63.03 Aligned_cols=112 Identities=10% Similarity=0.165 Sum_probs=69.8
Q ss_pred cCCCCccEEecCCC-cCccc----cChhhhcCCCCcEEEcccCccccc----cChhhhCCCCCCEEecccCccccc----
Q 037558 367 CQGGALEIFTVSEN-HFQGT----IPTSVRNCTSLIRVHLNGNNLTGN----ISEALAIYPNLTFIDLSRNNFYGE---- 433 (518)
Q Consensus 367 ~~~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~---- 433 (518)
...+.|+.|++++| .+... +.+.+..-+.|+.|+|++|+|.+. +.+.+..-+.|++|+|++|.|...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 33455666666664 44321 233445567788888888877744 334555667788888888887644
Q ss_pred cCccccCCCCCCEEEccCCc---ccc----CccccccCCCCCCEEeCcCCcC
Q 037558 434 ISSNWGKCPKLDTLNVSMNN---ITG----GIPREIGNSSQLQALDLSLNHI 478 (518)
Q Consensus 434 ~~~~~~~~~~L~~L~ls~n~---l~~----~~~~~~~~l~~L~~L~L~~n~l 478 (518)
+...+..-+.|++|+|++|. +.. .+...+..-+.|+.|+++.|.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 23345556678888887653 232 2344555667888888887754
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.22 E-value=0.009 Score=48.24 Aligned_cols=56 Identities=21% Similarity=0.192 Sum_probs=31.0
Q ss_pred EEEcccCccc-cccChhhhCCCCCCEEecccCccccccCccccCCCCCCEEEccCCccc
Q 037558 398 RVHLNGNNLT-GNISEALAIYPNLTFIDLSRNNFYGEISSNWGKCPKLDTLNVSMNNIT 455 (518)
Q Consensus 398 ~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ls~n~l~ 455 (518)
.++.++++++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5566666665 23332221 35666666666666555555566666666666666553
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.18 E-value=0.011 Score=47.62 Aligned_cols=57 Identities=19% Similarity=0.233 Sum_probs=42.4
Q ss_pred CEEecccCccc-cccCccccCCCCCCEEEccCCccccCccccccCCCCCCEEeCcCCcCc
Q 037558 421 TFIDLSRNNFY-GEISSNWGKCPKLDTLNVSMNNITGGIPREIGNSSQLQALDLSLNHIV 479 (518)
Q Consensus 421 ~~L~L~~n~l~-~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 479 (518)
..++-+++.++ ..+|..+ .++|++|+|++|+|+...+..|..+++|+.|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777788776 3455433 347889999999988655666788888999999998764
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=46.62 E-value=44 Score=24.75 Aligned_cols=37 Identities=19% Similarity=0.195 Sum_probs=14.8
Q ss_pred ccccCCCCCcEEEcccCcCCCCcchhccCCCCCcEEEc
Q 037558 197 SDIGNSKSIFNLDLSSNQFSGPIPLFFGNLSNLKSLYL 234 (518)
Q Consensus 197 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 234 (518)
..|.++.+|+.+.+-.+ ++......|..|.+|+.+.+
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~ 50 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLIL 50 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEE
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEE
Confidence 33444444444444332 22233333444444444444
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.24 E-value=58 Score=24.11 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=19.0
Q ss_pred cccccCCCCCcEEEccCCcCcccCccccCCCCCccEEEccC
Q 037558 268 PRSFGNLTSLSTLRLSKNELFGSIPDEIGKMRSLSVLDLNE 308 (518)
Q Consensus 268 ~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L~~L~l~~ 308 (518)
...|.++.+|+.+.+-.+ ++.+-..+|.+|.+|+.+.+..
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344445555555555443 2223334455555555555543
Done!