BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037561
         (179 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1GLV|A Chain A, Three-Dimensional Structure Of The Glutathione Synthetase
           From Escherichia Coli B At 2.0 Angstroms Resolution
          Length = 303

 Score = 29.6 bits (65), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 11/76 (14%)

Query: 75  NYSVW----AFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIAN 130
           NY  W      Q+ P    DV++ + DPP DT F ++ Y L            +  +I N
Sbjct: 62  NYEEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYILERAE-------EKGTLIVN 114

Query: 131 TTQGGGDGFEFVLKRW 146
             Q   D  E +   W
Sbjct: 115 KPQSLRDCNEKLFTAW 130


>pdb|1GSA|A Chain A, Structure Of Glutathione Synthetase Complexed With Adp And
           Glutathione
 pdb|1GSH|A Chain A, Structure Of Escherichia Coli Glutathione Synthetase At Ph
           7.5
 pdb|2GLT|A Chain A, Structure Of Escherichia Coli Glutathione Synthetase At Ph
           6.0
          Length = 316

 Score = 29.6 bits (65), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 11/76 (14%)

Query: 75  NYSVW----AFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIAN 130
           NY  W      Q+ P    DV++ + DPP DT F ++ Y L            +  +I N
Sbjct: 62  NYEEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYILERAE-------EKGTLIVN 114

Query: 131 TTQGGGDGFEFVLKRW 146
             Q   D  E +   W
Sbjct: 115 KPQSLRDCNEKLFTAW 130


>pdb|3PNZ|A Chain A, Crystal Structure Of The Lactonase Lmo2620 From Listeria
           Monocytogenes
 pdb|3PNZ|B Chain B, Crystal Structure Of The Lactonase Lmo2620 From Listeria
           Monocytogenes
 pdb|3PNZ|C Chain C, Crystal Structure Of The Lactonase Lmo2620 From Listeria
           Monocytogenes
 pdb|3PNZ|D Chain D, Crystal Structure Of The Lactonase Lmo2620 From Listeria
           Monocytogenes
 pdb|3PNZ|E Chain E, Crystal Structure Of The Lactonase Lmo2620 From Listeria
           Monocytogenes
 pdb|3PNZ|F Chain F, Crystal Structure Of The Lactonase Lmo2620 From Listeria
           Monocytogenes
          Length = 330

 Score = 28.1 bits (61), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 134 GGGDGFEFVLKRWLPYYFACGERGGFHCREGRMKFMV 170
           G G G E++ K+W+P +       GF   +   KF V
Sbjct: 283 GHGPGLEYIAKKWVPRFIDEANEKGFDGEKLVKKFFV 319


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.143    0.522 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,222,109
Number of Sequences: 62578
Number of extensions: 207593
Number of successful extensions: 368
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 365
Number of HSP's gapped (non-prelim): 8
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (23.1 bits)