Query 037561
Match_columns 179
No_of_seqs 168 out of 787
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 13:31:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037561.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037561hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03148 Blue copper-like prot 100.0 8E-38 1.7E-42 254.2 12.5 103 58-176 19-121 (167)
2 PF02298 Cu_bind_like: Plastoc 100.0 4.9E-30 1.1E-34 187.4 4.2 82 70-166 1-85 (85)
3 PRK02710 plastocyanin; Provisi 98.0 0.00017 3.7E-09 55.2 11.1 88 60-173 31-119 (119)
4 PF00127 Copper-bind: Copper b 97.9 4.2E-05 9.1E-10 56.4 7.0 78 84-172 19-98 (99)
5 TIGR02656 cyanin_plasto plasto 97.9 0.00012 2.6E-09 54.0 8.7 95 61-173 2-99 (99)
6 COG3794 PetE Plastocyanin [Ene 97.6 0.00029 6.3E-09 55.6 8.0 72 84-173 56-127 (128)
7 TIGR03102 halo_cynanin halocya 97.6 0.00048 1E-08 53.2 8.7 90 58-172 22-114 (115)
8 TIGR02375 pseudoazurin pseudoa 97.5 0.00058 1.3E-08 52.7 8.3 74 84-176 17-90 (116)
9 TIGR02657 amicyanin amicyanin. 96.6 0.017 3.7E-07 41.2 7.8 70 84-172 13-82 (83)
10 PF06525 SoxE: Sulfocyanin (So 95.7 0.056 1.2E-06 45.6 7.9 95 75-174 77-187 (196)
11 TIGR03095 rusti_cyanin rusticy 95.4 0.089 1.9E-06 42.0 7.7 79 85-172 55-147 (148)
12 TIGR03094 sulfo_cyanin sulfocy 93.9 0.35 7.5E-06 40.7 7.9 82 88-174 91-186 (195)
13 COG4454 Uncharacterized copper 91.5 0.46 1E-05 38.9 5.4 84 83-174 64-158 (158)
14 KOG3858 Ephrin, ligand for Eph 91.2 0.94 2E-05 39.2 7.2 85 87-176 48-163 (233)
15 PF00812 Ephrin: Ephrin; Inte 89.9 0.53 1.1E-05 37.8 4.3 88 85-173 25-144 (145)
16 PF13473 Cupredoxin_1: Cupredo 89.5 0.83 1.8E-05 33.5 4.8 62 84-164 37-100 (104)
17 TIGR03096 nitroso_cyanin nitro 83.3 4.1 8.8E-05 32.5 6.0 63 83-163 62-124 (135)
18 PLN02604 oxidoreductase 79.8 12 0.00026 35.8 8.9 83 84-173 57-143 (566)
19 PF15240 Pro-rich: Proline-ric 76.7 1.3 2.9E-05 36.9 1.3 18 9-26 1-18 (179)
20 TIGR02376 Cu_nitrite_red nitri 76.6 11 0.00025 33.2 7.2 84 84-174 61-146 (311)
21 PF00116 COX2: Cytochrome C ox 75.9 5.4 0.00012 30.5 4.4 70 84-172 48-119 (120)
22 PF07172 GRP: Glycine rich pro 73.5 3.4 7.3E-05 30.9 2.7 15 1-16 1-15 (95)
23 PRK02888 nitrous-oxide reducta 73.5 11 0.00025 37.0 6.9 76 83-174 556-634 (635)
24 KOG4671 Brain cell membrane pr 71.5 6.9 0.00015 33.1 4.3 43 5-47 18-62 (201)
25 PLN03148 Blue copper-like prot 70.4 3.3 7E-05 34.2 2.1 27 26-71 29-55 (167)
26 PF07732 Cu-oxidase_3: Multico 61.6 7.7 0.00017 29.4 2.6 84 84-175 28-116 (117)
27 TIGR03388 ascorbase L-ascorbat 59.6 27 0.00058 33.2 6.3 82 84-173 34-120 (541)
28 COG1622 CyoA Heme/copper-type 55.6 13 0.00027 32.4 3.1 81 76-175 131-213 (247)
29 TIGR02695 azurin azurin. Azuri 52.8 20 0.00042 28.4 3.5 22 145-170 101-123 (125)
30 MTH00047 COX2 cytochrome c oxi 51.2 22 0.00048 29.7 3.8 33 139-175 158-192 (194)
31 TIGR02866 CoxB cytochrome c ox 47.8 28 0.00061 28.6 4.0 32 139-174 159-192 (201)
32 PLN00115 pollen allergen group 45.7 19 0.00041 28.0 2.5 24 1-26 1-24 (118)
33 PF02839 CBM_5_12: Carbohydrat 43.3 13 0.00029 22.7 1.1 18 76-94 1-18 (41)
34 MTH00140 COX2 cytochrome c oxi 42.7 38 0.00083 28.6 4.1 34 137-174 180-215 (228)
35 PTZ00047 cytochrome c oxidase 40.6 40 0.00087 27.7 3.7 31 140-174 116-148 (162)
36 MTH00154 COX2 cytochrome c oxi 39.9 42 0.00092 28.5 3.9 32 139-174 182-215 (227)
37 MTH00168 COX2 cytochrome c oxi 37.8 45 0.00098 28.2 3.8 32 139-174 182-215 (225)
38 MTH00129 COX2 cytochrome c oxi 35.5 49 0.0011 28.2 3.6 32 139-174 182-215 (230)
39 MTH00139 COX2 cytochrome c oxi 35.2 51 0.0011 27.8 3.7 32 139-174 182-215 (226)
40 MTH00117 COX2 cytochrome c oxi 34.6 64 0.0014 27.4 4.2 32 139-174 182-215 (227)
41 PF12961 DUF3850: Domain of Un 34.4 24 0.00051 25.4 1.3 13 83-95 26-38 (72)
42 MTH00098 COX2 cytochrome c oxi 32.6 64 0.0014 27.4 3.9 32 139-174 182-215 (227)
43 PLN02191 L-ascorbate oxidase 31.8 1.1E+02 0.0025 29.4 5.8 82 84-173 56-142 (574)
44 cd06555 ASCH_PF0470_like ASC-1 31.7 42 0.00091 25.7 2.4 15 84-98 30-44 (109)
45 MTH00038 COX2 cytochrome c oxi 31.4 75 0.0016 27.0 4.1 32 139-174 182-215 (229)
46 PLN00044 multi-copper oxidase- 27.3 2.1E+02 0.0045 28.0 6.8 79 84-175 62-149 (596)
47 TIGR01480 copper_res_A copper- 26.9 1.7E+02 0.0036 28.5 6.1 93 70-172 488-586 (587)
48 PF08980 DUF1883: Domain of un 26.5 12 0.00027 28.1 -1.3 78 85-176 10-89 (94)
49 PLN02835 oxidoreductase 26.2 2.3E+02 0.005 27.1 6.8 81 84-172 62-146 (539)
50 COG4233 Uncharacterized protei 25.9 3.1E+02 0.0068 24.4 7.1 65 78-174 92-156 (273)
51 PRK11878 psaM photosystem I re 25.8 88 0.0019 19.4 2.6 25 1-25 3-29 (34)
52 MTH00076 COX2 cytochrome c oxi 25.7 95 0.0021 26.4 3.7 32 139-174 182-215 (228)
53 MTH00008 COX2 cytochrome c oxi 25.6 95 0.0021 26.4 3.7 31 140-174 183-215 (228)
54 MTH00051 COX2 cytochrome c oxi 24.8 92 0.002 26.6 3.5 31 140-174 187-219 (234)
55 PLN02792 oxidoreductase 24.5 2.4E+02 0.0052 27.1 6.6 84 85-176 50-137 (536)
56 PHA02633 hypothetical protein; 23.9 48 0.001 23.3 1.3 26 146-175 30-55 (63)
57 TIGR01433 CyoA cytochrome o ub 23.9 1.1E+02 0.0024 26.0 3.8 32 139-174 181-214 (226)
58 MTH00023 COX2 cytochrome c oxi 23.3 1.2E+02 0.0026 26.0 4.0 31 140-174 194-226 (240)
59 PF14326 DUF4384: Domain of un 22.3 2.8E+02 0.0061 19.3 7.1 15 85-99 2-16 (83)
60 PRK10378 inactive ferrous ion 22.1 1.3E+02 0.0029 27.8 4.2 23 133-156 84-106 (375)
61 TIGR01432 QOXA cytochrome aa3 21.2 1.4E+02 0.003 25.0 3.8 32 139-174 172-205 (217)
62 PLN02354 copper ion binding / 20.9 3.6E+02 0.0078 26.0 7.0 84 85-176 61-148 (552)
63 MTH00027 COX2 cytochrome c oxi 20.8 1.5E+02 0.0032 26.0 4.0 32 139-174 216-249 (262)
64 TIGR03389 laccase laccase, pla 20.4 3.5E+02 0.0076 25.7 6.8 83 85-176 37-124 (539)
65 TIGR01480 copper_res_A copper- 20.0 3.3E+02 0.0071 26.5 6.6 91 70-173 67-161 (587)
No 1
>PLN03148 Blue copper-like protein; Provisional
Probab=100.00 E-value=8e-38 Score=254.22 Aligned_cols=103 Identities=33% Similarity=0.640 Sum_probs=96.2
Q ss_pred CCcEEEEcCCCCCCCCCCCchhhcCCCCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCc
Q 037561 58 GPSKIVVGGSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGD 137 (179)
Q Consensus 58 ~A~~~~VGg~~GW~~~~~Yt~WA~~~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~ 137 (179)
.|++|+|||+.||+.+.||++||+ +++|+|||+|+|+|+++ +|+|+|| ++++|++|+.+++ +..+++|++
T Consensus 19 ~a~~~~VGd~~GW~~~~~Y~~WA~-~k~F~VGD~LvF~Y~~~-----~hnV~~V-~~~~Y~~C~~~~p--i~~~tsG~d- 88 (167)
T PLN03148 19 TATDHIVGANKGWNPGINYTLWAN-NQTFYVGDLISFRYQKT-----QYNVFEV-NQTGYDNCTTEGA--AGNWTSGKD- 88 (167)
T ss_pred cceEEEeCCCCCcCCCCChhHhhc-CCCCccCCEEEEEecCC-----CceEEEE-ChHHcCcccCCCC--cceecCCCc-
Confidence 679999999999999999999999 58999999999999998 7999999 9999999999988 889999987
Q ss_pred ceEEEecCcccEEEEeCCCCCCCCcCCceEEEEEecCCC
Q 037561 138 GFEFVLKRWLPYYFACGERGGFHCREGRMKFMVLPLLRR 176 (179)
Q Consensus 138 ~f~v~L~~~G~~YFiCg~~~g~HC~~GqMKlaV~v~~~p 176 (179)
.|+|+++|++||||| . +||++| |||+|+|.+.|
T Consensus 89 --~v~L~~~G~~YFIcg-~--ghC~~G-mKl~I~V~~~~ 121 (167)
T PLN03148 89 --FIPLNKAKRYYFICG-N--GQCFNG-MKVTILVHPLP 121 (167)
T ss_pred --EEEecCCccEEEEcC-C--CccccC-CEEEEEEcCCC
Confidence 899999999999999 5 799999 89999997643
No 2
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=99.96 E-value=4.9e-30 Score=187.35 Aligned_cols=82 Identities=37% Similarity=0.683 Sum_probs=66.3
Q ss_pred CCCCC---CCchhhcCCCCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCc
Q 037561 70 WHFGF---NYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRW 146 (179)
Q Consensus 70 W~~~~---~Yt~WA~~~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~ 146 (179)
|+++. +|++||+ +++|+|||+|+|+|+++ +|+|+|| ++++|++|+.++| +..+.+|.+ +|+|+++
T Consensus 1 W~~~~~~~~Y~~Wa~-~~~F~vGD~LvF~y~~~-----~h~V~~V-~~~~y~~C~~~~~--~~~~~~G~~---~v~L~~~ 68 (85)
T PF02298_consen 1 WTIPTNASNYTDWAS-GKTFRVGDTLVFNYDSG-----QHSVVEV-SKADYDSCNSSNP--ISTYSTGND---TVTLTKP 68 (85)
T ss_dssp SSSSSSTTHHHHHHC-TS-BETTEEEEEE--TT-----TB-EEEE-SHHHHHHT--STT--SEEE-SSEE---EEEE-SS
T ss_pred CccCCCccchhHhhc-CCcEeCCCEEEEEecCC-----CCeEEec-ChhhCccCCCCCc--eecccCCCE---EEEeCCC
Confidence 88887 8999999 48999999999999998 7999999 7999999999998 888888876 8999999
Q ss_pred ccEEEEeCCCCCCCCcCCce
Q 037561 147 LPYYFACGERGGFHCREGRM 166 (179)
Q Consensus 147 G~~YFiCg~~~g~HC~~GqM 166 (179)
|++||||+++ +||+.| |
T Consensus 69 G~~YFic~~~--~HC~~G-q 85 (85)
T PF02298_consen 69 GPHYFICGVP--GHCQKG-Q 85 (85)
T ss_dssp EEEEEE--ST--TTTTTT--
T ss_pred cCeEEEeCCC--Cccccc-C
Confidence 9999999999 999999 6
No 3
>PRK02710 plastocyanin; Provisional
Probab=97.95 E-value=0.00017 Score=55.16 Aligned_cols=88 Identities=14% Similarity=0.137 Sum_probs=55.5
Q ss_pred cEEEEcCCCCC-CCCCCCchhhcCCCCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcc
Q 037561 60 SKIVVGGSDNW-HFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDG 138 (179)
Q Consensus 60 ~~~~VGg~~GW-~~~~~Yt~WA~~~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~ 138 (179)
.++.+|.+.|+ .+.++ ..++++||++.|.-... ..|++..- . -+....++ + .... ++.
T Consensus 31 ~~V~~~~~~~~~~F~P~-------~i~v~~Gd~V~~~N~~~----~~H~v~~~--~--~~~~~~~~---~-~~~p--g~t 89 (119)
T PRK02710 31 VEVKMGSDAGMLAFEPS-------TLTIKAGDTVKWVNNKL----APHNAVFD--G--AKELSHKD---L-AFAP--GES 89 (119)
T ss_pred EEEEEccCCCeeEEeCC-------EEEEcCCCEEEEEECCC----CCceEEec--C--Cccccccc---c-ccCC--CCE
Confidence 45666655443 23332 46899999999986443 27998742 1 11111111 1 1122 345
Q ss_pred eEEEecCcccEEEEeCCCCCCCCcCCceEEEEEec
Q 037561 139 FEFVLKRWLPYYFACGERGGFHCREGRMKFMVLPL 173 (179)
Q Consensus 139 f~v~L~~~G~~YFiCg~~~g~HC~~GqMKlaV~v~ 173 (179)
++++++.+|.|-|+|. .|=+.| ||-.|.|.
T Consensus 90 ~~~tF~~~G~y~y~C~----~H~~~g-M~G~I~V~ 119 (119)
T PRK02710 90 WEETFSEAGTYTYYCE----PHRGAG-MVGKITVE 119 (119)
T ss_pred EEEEecCCEEEEEEcC----CCccCC-cEEEEEEC
Confidence 6899999999999998 488899 99999873
No 4
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=97.93 E-value=4.2e-05 Score=56.36 Aligned_cols=78 Identities=15% Similarity=0.230 Sum_probs=51.5
Q ss_pred CCEEeCCEEEEEeCCCCCCCCCcceEEeCCccc-CCcCCCCCccc-eeeecCCCCcceEEEecCcccEEEEeCCCCCCCC
Q 037561 84 APFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWS-YLRCDLSRAKM-IANTTQGGGDGFEFVLKRWLPYYFACGERGGFHC 161 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~-Yd~C~~s~~~~-i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~g~HC 161 (179)
.++++||++.|..... ..|+|........ -..+....+.. ......| +.+.++++++|.|.|+|. + |.
T Consensus 19 i~V~~G~tV~~~n~~~----~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G--~~~~~tF~~~G~y~y~C~-P---H~ 88 (99)
T PF00127_consen 19 ITVKAGDTVTFVNNDS----MPHNVVFVADGMPAGADSDYVPPGDSSPLLAPG--ETYSVTFTKPGTYEYYCT-P---HY 88 (99)
T ss_dssp EEEETTEEEEEEEESS----SSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTT--EEEEEEEESSEEEEEEET-T---TG
T ss_pred EEECCCCEEEEEECCC----CCceEEEecccccccccccccCccccceecCCC--CEEEEEeCCCeEEEEEcC-C---Cc
Confidence 6789999999999533 2799998731110 01122111100 1112233 456888889999999999 7 99
Q ss_pred cCCceEEEEEe
Q 037561 162 REGRMKFMVLP 172 (179)
Q Consensus 162 ~~GqMKlaV~v 172 (179)
..| |+-.|.|
T Consensus 89 ~~G-M~G~i~V 98 (99)
T PF00127_consen 89 EAG-MVGTIIV 98 (99)
T ss_dssp GTT-SEEEEEE
T ss_pred ccC-CEEEEEE
Confidence 999 9998887
No 5
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.87 E-value=0.00012 Score=54.05 Aligned_cols=95 Identities=17% Similarity=0.152 Sum_probs=56.8
Q ss_pred EEEEcCCCC-CCCCCCCchhhcCCCCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccce--eeecCCCCc
Q 037561 61 KIVVGGSDN-WHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMI--ANTTQGGGD 137 (179)
Q Consensus 61 ~~~VGg~~G-W~~~~~Yt~WA~~~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i--~~~~~G~~~ 137 (179)
++.||.+.| =.+.++ ..++++||++.|.-+.. ..|+|+.. +. ....=.......+ .......++
T Consensus 2 ~v~~g~~~g~~~F~P~-------~i~v~~G~~V~~~N~~~----~~H~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~pG~ 68 (99)
T TIGR02656 2 TVKMGADKGALVFEPA-------KISIAAGDTVEWVNNKG----GPHNVVFD-ED-AVPAGVKELAKSLSHKDLLNSPGE 68 (99)
T ss_pred EEEEecCCCceeEeCC-------EEEECCCCEEEEEECCC----CCceEEEC-CC-CCccchhhhcccccccccccCCCC
Confidence 456664333 333333 46899999999995433 37999864 21 1110000000001 011112235
Q ss_pred ceEEEecCcccEEEEeCCCCCCCCcCCceEEEEEec
Q 037561 138 GFEFVLKRWLPYYFACGERGGFHCREGRMKFMVLPL 173 (179)
Q Consensus 138 ~f~v~L~~~G~~YFiCg~~~g~HC~~GqMKlaV~v~ 173 (179)
.++++++.+|.|-|.|. .|++.| |+-.|.|.
T Consensus 69 t~~~tF~~~G~y~y~C~----~H~~aG-M~G~I~V~ 99 (99)
T TIGR02656 69 SYEVTFSTPGTYTFYCE----PHRGAG-MVGKITVE 99 (99)
T ss_pred EEEEEeCCCEEEEEEcC----CccccC-CEEEEEEC
Confidence 57889999999999998 499999 99999873
No 6
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.64 E-value=0.00029 Score=55.59 Aligned_cols=72 Identities=17% Similarity=0.192 Sum_probs=54.6
Q ss_pred CCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCCCCCCcC
Q 037561 84 APFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCRE 163 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~g~HC~~ 163 (179)
.+..+||++.|...... .|||...... +.-. ...+..+.++.|+++++++|.|.|+|.- |=..
T Consensus 56 v~v~pGDTVtw~~~d~~----~Hnv~~~~~~------~~~g---~~~~~~~~~~s~~~Tfe~~G~Y~Y~C~P----H~~~ 118 (128)
T COG3794 56 VTVKPGDTVTWVNTDSV----GHNVTAVGGM------DPEG---SGTLKAGINESFTHTFETPGEYTYYCTP----HPGM 118 (128)
T ss_pred EEECCCCEEEEEECCCC----CceEEEeCCC------Cccc---ccccccCCCcceEEEecccceEEEEecc----CCCC
Confidence 68999999999999872 6999987322 2211 2233455457789999999999999994 7888
Q ss_pred CceEEEEEec
Q 037561 164 GRMKFMVLPL 173 (179)
Q Consensus 164 GqMKlaV~v~ 173 (179)
| ||-.|.|.
T Consensus 119 g-M~G~IvV~ 127 (128)
T COG3794 119 G-MKGKIVVG 127 (128)
T ss_pred C-cEEEEEeC
Confidence 9 99999874
No 7
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.61 E-value=0.00048 Score=53.16 Aligned_cols=90 Identities=17% Similarity=0.164 Sum_probs=59.5
Q ss_pred CCcEEEEc--CCCC-CCCCCCCchhhcCCCCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCC
Q 037561 58 GPSKIVVG--GSDN-WHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQG 134 (179)
Q Consensus 58 ~A~~~~VG--g~~G-W~~~~~Yt~WA~~~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G 134 (179)
...++.|| ++.| ..+.+. ..++++||++.|+.+... ..|+|.-. ....|+. .. + ...
T Consensus 22 ~~~~v~~G~~~~~g~~~F~P~-------~ltV~~GdTVtw~~~~d~---~~HnV~s~-~~~~f~s----~~--~---~~~ 81 (115)
T TIGR03102 22 DEVTVDVGAEANGGGFAFDPP-------AIRVDPGTTVVWEWTGEG---GGHNVVSD-GDGDLDE----SE--R---VSE 81 (115)
T ss_pred ceEEEEecccCCCCceeEeCC-------EEEECCCCEEEEEECCCC---CCEEEEEC-CCCCccc----cc--c---ccC
Confidence 55678888 3322 344332 368999999999986421 26999753 2233441 11 1 111
Q ss_pred CCcceEEEecCcccEEEEeCCCCCCCCcCCceEEEEEe
Q 037561 135 GGDGFEFVLKRWLPYYFACGERGGFHCREGRMKFMVLP 172 (179)
Q Consensus 135 ~~~~f~v~L~~~G~~YFiCg~~~g~HC~~GqMKlaV~v 172 (179)
.++.|+++++++|.|-|+|.. |=..| ||-.|.|
T Consensus 82 ~G~t~s~Tf~~~G~Y~Y~C~p----H~~~g-M~G~I~V 114 (115)
T TIGR03102 82 EGTTYEHTFEEPGIYLYVCVP----HEALG-MKGAVVV 114 (115)
T ss_pred CCCEEEEEecCCcEEEEEccC----CCCCC-CEEEEEE
Confidence 235689999999999999994 76779 9999887
No 8
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.54 E-value=0.00058 Score=52.74 Aligned_cols=74 Identities=14% Similarity=0.052 Sum_probs=54.0
Q ss_pred CCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCCCCCCcC
Q 037561 84 APFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCRE 163 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~g~HC~~ 163 (179)
.++++||++.|..... .|+|..++.. .- ... ..+.++.++.|+++++++|.|-|.|. .|=..
T Consensus 17 v~V~~GdTV~f~n~d~-----~Hnv~~~~~~-~p-----~g~---~~~~s~~g~~~~~tF~~~G~Y~Y~C~----pH~~~ 78 (116)
T TIGR02375 17 IRAAPGDTVTFVPTDK-----GHNVETIKGM-IP-----EGA---EAFKSKINEEYTVTVTEEGVYGVKCT----PHYGM 78 (116)
T ss_pred EEECCCCEEEEEECCC-----CeeEEEccCC-Cc-----CCc---ccccCCCCCEEEEEeCCCEEEEEEcC----CCccC
Confidence 5799999999999876 5998864211 00 111 11223444668999999999999999 48999
Q ss_pred CceEEEEEecCCC
Q 037561 164 GRMKFMVLPLLRR 176 (179)
Q Consensus 164 GqMKlaV~v~~~p 176 (179)
| |+-.|.|-..|
T Consensus 79 G-M~G~V~Vg~~~ 90 (116)
T TIGR02375 79 G-MVALIQVGDPP 90 (116)
T ss_pred C-CEEEEEECCCC
Confidence 9 99999997654
No 9
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=96.58 E-value=0.017 Score=41.18 Aligned_cols=70 Identities=14% Similarity=0.157 Sum_probs=46.1
Q ss_pred CCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCCCCCCcC
Q 037561 84 APFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCRE 163 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~g~HC~~ 163 (179)
.+.++||+|.|.-... ..|+|... +. ....=+...+ ..+.++.|++++++||+|-|.|... .
T Consensus 13 i~v~~GdtVt~~N~d~----~~Hnv~~~-~g-~~~~~~~~~~------~~~~g~~~~~tf~~~G~y~y~C~~H------p 74 (83)
T TIGR02657 13 LHVKVGDTVTWINREA----MPHNVHFV-AG-VLGEAALKGP------MMKKEQAYSLTFTEAGTYDYHCTPH------P 74 (83)
T ss_pred EEECCCCEEEEEECCC----CCccEEec-CC-CCcccccccc------ccCCCCEEEEECCCCEEEEEEcCCC------C
Confidence 4688999999987754 36999864 21 1111001111 1123356899999999999999986 2
Q ss_pred CceEEEEEe
Q 037561 164 GRMKFMVLP 172 (179)
Q Consensus 164 GqMKlaV~v 172 (179)
. ||-.|.|
T Consensus 75 ~-M~G~v~V 82 (83)
T TIGR02657 75 F-MRGKVVV 82 (83)
T ss_pred C-CeEEEEE
Confidence 5 7877776
No 10
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=95.75 E-value=0.056 Score=45.58 Aligned_cols=95 Identities=14% Similarity=0.107 Sum_probs=56.7
Q ss_pred CCchhhcCCCCE--EeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCc--cce----ee--------ecCCCCcc
Q 037561 75 NYSVWAFQNAPF--YVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRA--KMI----AN--------TTQGGGDG 138 (179)
Q Consensus 75 ~Yt~WA~~~ktF--~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~--~~i----~~--------~~~G~~~~ 138 (179)
||+.=+.++-++ -+|-.+.|+|...+ .+.|++..|.+...+..+..-.+ +-+ .. ...|....
T Consensus 77 nfnGts~G~m~i~VPAGw~V~i~f~N~~--~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~ 154 (196)
T PF06525_consen 77 NFNGTSNGQMTIYVPAGWNVQITFTNQE--SLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSAS 154 (196)
T ss_pred eeecccCCcEEEEEcCCCEEEEEEEcCC--CCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceee
Confidence 454444433333 35888889888753 46899999977666655543211 101 00 01222111
Q ss_pred eEEEecCcccEEEEeCCCCCCCCcCCceEEEEEecC
Q 037561 139 FEFVLKRWLPYYFACGERGGFHCREGRMKFMVLPLL 174 (179)
Q Consensus 139 f~v~L~~~G~~YFiCg~~~g~HC~~GqMKlaV~v~~ 174 (179)
..+.-..+|.||++|+.+ +|=+.| |-..+.|.+
T Consensus 155 ~~~~~l~aG~YwlvC~ip--GHA~sG-Mw~~LiVs~ 187 (196)
T PF06525_consen 155 GVYNDLPAGYYWLVCGIP--GHAESG-MWGVLIVSS 187 (196)
T ss_pred EEEccCCCceEEEEccCC--ChhhcC-CEEEEEEec
Confidence 112122589999999999 999999 876666654
No 11
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=95.42 E-value=0.089 Score=42.01 Aligned_cols=79 Identities=13% Similarity=0.081 Sum_probs=49.5
Q ss_pred CEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCC------------cCCCCCccceeeecCCC--CcceEEEecCcccEE
Q 037561 85 PFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYL------------RCDLSRAKMIANTTQGG--GDGFEFVLKRWLPYY 150 (179)
Q Consensus 85 tF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd------------~C~~s~~~~i~~~~~G~--~~~f~v~L~~~G~~Y 150 (179)
+++.||++.|....... ...|...+......+. .|....+ ..+|. ...|+++++++|.||
T Consensus 55 ~v~~Gd~V~v~v~N~~~-~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~-----~~~g~~~~~~~tf~f~~aGtyw 128 (148)
T TIGR03095 55 VIPEGVTVHFTVINTDT-DSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPP-----PKSGKFGYTDFTYHFSTAGTYW 128 (148)
T ss_pred EEcCCCEEEEEEEeCCC-CccccEEeecCCCccccccccCCCCccccCcccCC-----CCCCccceeEEEEECCCCeEEE
Confidence 46889999998887632 1357777652111110 1111100 11121 134688888999999
Q ss_pred EEeCCCCCCCCcCCceEEEEEe
Q 037561 151 FACGERGGFHCREGRMKFMVLP 172 (179)
Q Consensus 151 FiCg~~~g~HC~~GqMKlaV~v 172 (179)
|.|..+ +|=+.| |.-.|.|
T Consensus 129 yhC~~p--gH~~~G-M~G~iiV 147 (148)
T TIGR03095 129 YLCTYP--GHAENG-MYGKIVV 147 (148)
T ss_pred EEcCCh--hHHHCC-CEEEEEE
Confidence 999999 998889 8777665
No 12
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=93.92 E-value=0.35 Score=40.75 Aligned_cols=82 Identities=20% Similarity=0.192 Sum_probs=47.4
Q ss_pred eCCEEEEEeCCCCCCCCCcceEEeCCcccCCc-CCCC-Cccc-----------eeee-cCCCCcceEEEecCcccEEEEe
Q 037561 88 VNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLR-CDLS-RAKM-----------IANT-TQGGGDGFEFVLKRWLPYYFAC 153 (179)
Q Consensus 88 VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~-C~~s-~~~~-----------i~~~-~~G~~~~f~v~L~~~G~~YFiC 153 (179)
.|=.+.+++...+ ..+|+...|++...+.. =+.+ +.+. ..+. .+|..+.-.+.-.++|.||++|
T Consensus 91 aGw~V~V~f~N~e--~~pHnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~~~~~~G~YwlvC 168 (195)
T TIGR03094 91 AGWNVYVTFTNYE--SLPHNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWWNDTSAGKYWLVC 168 (195)
T ss_pred CCCEEEEEEEcCC--CCCccEEEecCCCCCCCccccccCceeEeecccccCccccccccccceeEEEeccCCCeeEEEEc
Confidence 4667777666553 34899998866654432 1111 0010 1111 1232221123333789999999
Q ss_pred CCCCCCCCcCCceEEEEEecC
Q 037561 154 GERGGFHCREGRMKFMVLPLL 174 (179)
Q Consensus 154 g~~~g~HC~~GqMKlaV~v~~ 174 (179)
+.+ +|-+.| |=..+.|++
T Consensus 169 gip--GHAesG-Mw~~lIVSs 186 (195)
T TIGR03094 169 GIT--GHAESG-MWAVVIVSS 186 (195)
T ss_pred ccC--ChhhcC-cEEEEEEec
Confidence 999 999999 866655544
No 13
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=91.52 E-value=0.46 Score=38.88 Aligned_cols=84 Identities=13% Similarity=0.055 Sum_probs=53.1
Q ss_pred CCCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccC-----------CcCCCCCccceeeecCCCCcceEEEecCcccEEE
Q 037561 83 NAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSY-----------LRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYF 151 (179)
Q Consensus 83 ~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Y-----------d~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YF 151 (179)
+..++.|-+.+|.-.... ...|...+- +.+. +.=.-..+. ..+...|.+..+++.++++|.|=|
T Consensus 64 ~~~v~aG~tv~~v~~n~~--el~hef~~~--~~~~~~~~~~~~~~~~Dme~d~~~-~v~L~PG~s~elvv~ft~~g~ye~ 138 (158)
T COG4454 64 SFEVKAGETVRFVLKNEG--ELKHEFTMD--APDKNLEHVTHMILADDMEHDDPN-TVTLAPGKSGELVVVFTGAGKYEF 138 (158)
T ss_pred cccccCCcEEeeeecCcc--cceEEEecc--CccccchhHHHhhhCCccccCCcc-eeEeCCCCcEEEEEEecCCccEEE
Confidence 467888998888766542 123544431 1111 100001111 233455655557889999999999
Q ss_pred EeCCCCCCCCcCCceEEEEEecC
Q 037561 152 ACGERGGFHCREGRMKFMVLPLL 174 (179)
Q Consensus 152 iCg~~~g~HC~~GqMKlaV~v~~ 174 (179)
+|.+| +|=+.| |.-.|+|..
T Consensus 139 ~C~iP--GHy~AG-M~g~itV~p 158 (158)
T COG4454 139 ACNIP--GHYEAG-MVGEITVSP 158 (158)
T ss_pred EecCC--CcccCC-cEEEEEeCC
Confidence 99999 999999 999998863
No 14
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=91.16 E-value=0.94 Score=39.21 Aligned_cols=85 Identities=24% Similarity=0.248 Sum_probs=45.3
Q ss_pred EeCCEEEEE---eCCCCCC-CCCcceEEeCCcccCCcCCC-CCccce----------------eeecCCCCcceEEEecC
Q 037561 87 YVNDVLVFK---YDPPNDT-VFPHSVYQLPNLWSYLRCDL-SRAKMI----------------ANTTQGGGDGFEFVLKR 145 (179)
Q Consensus 87 ~VGDtLvF~---Y~~~~~~-~~~HsV~~V~~~~~Yd~C~~-s~~~~i----------------~~~~~G~~~~f~v~L~~ 145 (179)
++||.|-+- |+.+... ..+.=+++| ++.+|++|+. +.+..+ +.++.-. -+|.|.
T Consensus 48 ~igD~ldIiCP~~e~~~~~~~E~yilYmV-~~~~y~~C~~~s~~~~~~~C~rP~~~~kfsikFq~ftP~p-~G~EF~--- 122 (233)
T KOG3858|consen 48 QIGDYLDIICPHYEEGGPEGYEYYILYMV-SEEEYDLCELRSKPFKRWECNRPSTPLKFSIKFQRFTPFP-LGFEFQ--- 122 (233)
T ss_pred ccCCEEEEECCCCCCCCCCcceEEEEEEe-ChHHhhhhhccCCCcEEEEecCCCcchhhhhhheecCCCC-CCcccc---
Confidence 347777664 4444221 123457777 9999999996 333211 1111111 122332
Q ss_pred cc-cEEEEeCCCC---------CCCCcCCceEEEEEecCCC
Q 037561 146 WL-PYYFACGERG---------GFHCREGRMKFMVLPLLRR 176 (179)
Q Consensus 146 ~G-~~YFiCg~~~---------g~HC~~GqMKlaV~v~~~p 176 (179)
|| .|||||.-.+ ++-|....||+.+.|.-+|
T Consensus 123 pG~~YY~IStStg~~~g~~~~~ggvc~~~~mk~~~~V~~~~ 163 (233)
T KOG3858|consen 123 PGHTYYYISTSTGDAEGLCNLRGGVCVTRNMKLLMKVGQSP 163 (233)
T ss_pred CCCeEEEEeCCCccccccchhhCCEeccCCceEEEEecccC
Confidence 45 5777776541 2334444489888877655
No 15
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=89.95 E-value=0.53 Score=37.84 Aligned_cols=88 Identities=18% Similarity=0.246 Sum_probs=48.6
Q ss_pred CEEeCCEEEEEeCCCCCC------CCCcceEEeCCcccCCcCCCC-CccceeeecC-C---CCcceEEEecC--------
Q 037561 85 PFYVNDVLVFKYDPPNDT------VFPHSVYQLPNLWSYLRCDLS-RAKMIANTTQ-G---GGDGFEFVLKR-------- 145 (179)
Q Consensus 85 tF~VGDtLvF~Y~~~~~~------~~~HsV~~V~~~~~Yd~C~~s-~~~~i~~~~~-G---~~~~f~v~L~~-------- 145 (179)
..++||.|-+-=+..+.. .....+++| ++.+|+.|+.. .+..+..=.. - +...|++.+.+
T Consensus 25 ~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~V-s~~~y~~C~~~~~~~~l~~C~~P~~~~~~~kft~kFq~fSP~p~G~ 103 (145)
T PF00812_consen 25 EVRIGDYLDIICPHYEPGGPPPEEYEYYILYMV-SEEGYESCSLTSRPRLLWECDRPEAPHGPKKFTIKFQEFSPFPLGL 103 (145)
T ss_dssp EE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE--HHHHHHTBSSTSEEEEEEE-TTTSTTSSEEEEEESSSS-SSTTSS
T ss_pred EecCCCEEEEECCCCCCCCCCCCCceEEEEEEE-cHHHhcccCCCCCCcEEEEeCCCCCCCCCcEEEEEEEECCCCCCCe
Confidence 467899999865543211 235678999 99999999963 3332221111 1 12234443332
Q ss_pred ---cc-cEEEEeCCCC---------CCCCcCCceEEEEEec
Q 037561 146 ---WL-PYYFACGERG---------GFHCREGRMKFMVLPL 173 (179)
Q Consensus 146 ---~G-~~YFiCg~~~---------g~HC~~GqMKlaV~v~ 173 (179)
|| .||||+.-.+ ||-|..=+|||.+.|.
T Consensus 104 EF~pG~~YY~ISts~g~~~g~~~~~gG~C~~~~mkl~~~v~ 144 (145)
T PF00812_consen 104 EFQPGHDYYYISTSTGTQEGLDNRRGGLCLSHNMKLRIKVG 144 (145)
T ss_dssp S--TTEEEEEEEEESSSSTTTTSSBSCHHHEEEEEEEEECT
T ss_pred eecCCCeEEEEEccCCCCCCcccccccccCcCeeEEEEecC
Confidence 55 5888875441 2337775599998874
No 16
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=89.46 E-value=0.83 Score=33.47 Aligned_cols=62 Identities=18% Similarity=0.218 Sum_probs=31.9
Q ss_pred CCEEeCC--EEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCCCCCC
Q 037561 84 APFYVND--VLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHC 161 (179)
Q Consensus 84 ktF~VGD--tLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~g~HC 161 (179)
.+++.|+ +|+|+-.... .|++..- . .. - -.....|....++|+..++|.|=|.|+.. .+
T Consensus 37 i~v~~G~~v~l~~~N~~~~----~h~~~i~-~--------~~-~--~~~l~~g~~~~~~f~~~~~G~y~~~C~~~--~~- 97 (104)
T PF13473_consen 37 ITVKAGQPVTLTFTNNDSR----PHEFVIP-D--------LG-I--SKVLPPGETATVTFTPLKPGEYEFYCTMH--PN- 97 (104)
T ss_dssp EEEETTCEEEEEEEE-SSS-----EEEEEG-G--------GT-E--EEEE-TT-EEEEEEEE-S-EEEEEB-SSS---T-
T ss_pred EEEcCCCeEEEEEEECCCC----cEEEEEC-C--------Cc-e--EEEECCCCEEEEEEcCCCCEEEEEEcCCC--Cc-
Confidence 5799999 6666655442 5887653 1 11 1 12334454333344448999999999987 55
Q ss_pred cCC
Q 037561 162 REG 164 (179)
Q Consensus 162 ~~G 164 (179)
-+|
T Consensus 98 m~G 100 (104)
T PF13473_consen 98 MKG 100 (104)
T ss_dssp TB-
T ss_pred cee
Confidence 566
No 17
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=83.26 E-value=4.1 Score=32.52 Aligned_cols=63 Identities=10% Similarity=0.065 Sum_probs=40.5
Q ss_pred CCCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCCCCCCc
Q 037561 83 NAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCR 162 (179)
Q Consensus 83 ~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~g~HC~ 162 (179)
..+++.||.+.+.+...+ ...|.+..- ++. .+ .....|....++++.++||.|-|.|+. ||.
T Consensus 62 ~I~VkaGD~Vtl~vtN~d--~~~H~f~i~----~~g---is-----~~I~pGet~TitF~adKpG~Y~y~C~~----HP~ 123 (135)
T TIGR03096 62 ALVVKKGTPVKVTVENKS--PISEGFSID----AYG---IS-----EVIKAGETKTISFKADKAGAFTIWCQL----HPK 123 (135)
T ss_pred EEEECCCCEEEEEEEeCC--CCccceEEC----CCC---cc-----eEECCCCeEEEEEECCCCEEEEEeCCC----CCh
Confidence 367999999988776432 236776642 232 11 112335444467888999999999995 564
Q ss_pred C
Q 037561 163 E 163 (179)
Q Consensus 163 ~ 163 (179)
.
T Consensus 124 ~ 124 (135)
T TIGR03096 124 N 124 (135)
T ss_pred h
Confidence 3
No 18
>PLN02604 oxidoreductase
Probab=79.79 E-value=12 Score=35.78 Aligned_cols=83 Identities=13% Similarity=0.087 Sum_probs=50.2
Q ss_pred CCEEeCCEEEEEeCCC----CCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCCCC
Q 037561 84 APFYVNDVLVFKYDPP----NDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGF 159 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~----~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~g~ 159 (179)
.+++.||.++++.... ..++.-|.+.+..+ ..+|. .... .-.....|..-.|+|+++.+|++||=|-.. .
T Consensus 57 i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~-~~~DG--~~~~-tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~--~ 130 (566)
T PLN02604 57 ILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGT-PWFDG--TEGV-TQCPILPGETFTYEFVVDRPGTYLYHAHYG--M 130 (566)
T ss_pred EEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCC-ccccC--CCcc-ccCccCCCCeEEEEEEcCCCEEEEEeeCcH--H
Confidence 5789999999888765 12344566654311 11121 0000 001123444445688889999999999987 8
Q ss_pred CCcCCceEEEEEec
Q 037561 160 HCREGRMKFMVLPL 173 (179)
Q Consensus 160 HC~~GqMKlaV~v~ 173 (179)
|-..| |.-.|.|.
T Consensus 131 q~~~G-l~G~liV~ 143 (566)
T PLN02604 131 QREAG-LYGSIRVS 143 (566)
T ss_pred HHhCC-CeEEEEEE
Confidence 98999 76555554
No 19
>PF15240 Pro-rich: Proline-rich
Probab=76.71 E-value=1.3 Score=36.90 Aligned_cols=18 Identities=28% Similarity=0.552 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhhhhhccc
Q 037561 9 LILILSAASMLTVSMANR 26 (179)
Q Consensus 9 ~~~~~~~~~~~~v~~a~~ 26 (179)
||||||+|+|||.|-|.+
T Consensus 1 MLlVLLSvALLALSSAQ~ 18 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQS 18 (179)
T ss_pred ChhHHHHHHHHHhhhccc
Confidence 366788999999999876
No 20
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=76.55 E-value=11 Score=33.23 Aligned_cols=84 Identities=17% Similarity=0.233 Sum_probs=50.1
Q ss_pred CCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCC--CCCC
Q 037561 84 APFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERG--GFHC 161 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~--g~HC 161 (179)
.+++.||++...+.....+...|++..= -.. .......+.....|..-.|.|+++.+|+++|-|.... ..|=
T Consensus 61 irv~~Gd~v~v~v~N~~~~~~~h~~h~H-~~~-----~~dg~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~ 134 (311)
T TIGR02376 61 IRVHEGDYVELTLINPPTNTMPHNVDFH-AAT-----GALGGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHV 134 (311)
T ss_pred EEEECCCEEEEEEEeCCCCCCceeeeec-CCC-----ccCCCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHh
Confidence 4678999999887764211225665532 110 1111111223456655567889999999999999531 1477
Q ss_pred cCCceEEEEEecC
Q 037561 162 REGRMKFMVLPLL 174 (179)
Q Consensus 162 ~~GqMKlaV~v~~ 174 (179)
..| |.-.+.|..
T Consensus 135 ~~G-l~G~liV~~ 146 (311)
T TIGR02376 135 VSG-MNGAIMVLP 146 (311)
T ss_pred hcC-cceEEEeec
Confidence 788 766665543
No 21
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=75.91 E-value=5.4 Score=30.52 Aligned_cols=70 Identities=21% Similarity=0.348 Sum_probs=45.0
Q ss_pred CCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCCCCCCcC
Q 037561 84 APFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCRE 163 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~g~HC~~ 163 (179)
.....|+.+.|.-.+.+ +.|+... +. +. .+ + ..-.|....+.++.++||.|++.|.+- |-.
T Consensus 48 l~lp~g~~v~~~ltS~D---ViHsf~i-p~---~~------~k-~-d~~PG~~~~~~~~~~~~G~y~~~C~e~----CG~ 108 (120)
T PF00116_consen 48 LVLPAGQPVRFHLTSED---VIHSFWI-PE---LG------IK-M-DAIPGRTNSVTFTPDKPGTYYGQCAEY----CGA 108 (120)
T ss_dssp EEEETTSEEEEEEEESS---S-EEEEE-TT---CT------EE-E-EEBTTCEEEEEEEESSSEEEEEEE-SS----SST
T ss_pred ecccccceEeEEEEcCC---ccccccc-cc---cC------cc-c-ccccccceeeeeeeccCCcEEEcCccc----cCc
Confidence 46788999999988864 3588774 22 11 00 1 112333334578889999999999975 998
Q ss_pred Cc--eEEEEEe
Q 037561 164 GR--MKFMVLP 172 (179)
Q Consensus 164 Gq--MKlaV~v 172 (179)
|- |++.|.|
T Consensus 109 gH~~M~~~v~V 119 (120)
T PF00116_consen 109 GHSFMPGKVIV 119 (120)
T ss_dssp TGGG-EEEEEE
T ss_pred CcCCCeEEEEE
Confidence 84 8887776
No 22
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=73.51 E-value=3.4 Score=30.93 Aligned_cols=15 Identities=47% Similarity=0.454 Sum_probs=7.7
Q ss_pred CcchhhHHHHHHHHHH
Q 037561 1 MAFTSAHSLILILSAA 16 (179)
Q Consensus 1 m~~~~~~~~~~~~~~~ 16 (179)
|| .|+.+|+.|+|++
T Consensus 1 Ma-SK~~llL~l~LA~ 15 (95)
T PF07172_consen 1 MA-SKAFLLLGLLLAA 15 (95)
T ss_pred Cc-hhHHHHHHHHHHH
Confidence 77 6664444434433
No 23
>PRK02888 nitrous-oxide reductase; Validated
Probab=73.47 E-value=11 Score=36.96 Aligned_cols=76 Identities=12% Similarity=0.116 Sum_probs=47.9
Q ss_pred CCCEEeCCEEEEEeCCCCCC-CCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCCCCCC
Q 037561 83 NAPFYVNDVLVFKYDPPNDT-VFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHC 161 (179)
Q Consensus 83 ~ktF~VGDtLvF~Y~~~~~~-~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~g~HC 161 (179)
..++++||.+.|....-+.. -+.|+...- .|. .+ + ....|....++|+.++||.|++.|+.- |
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip----~~n------I~-~-dv~PG~t~svtF~adkPGvy~~~Ctef----C 619 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAIP----NYG------VN-M-EVAPQATASVTFTADKPGVYWYYCTWF----C 619 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceeec----ccC------cc-E-EEcCCceEEEEEEcCCCEEEEEECCcc----c
Confidence 35789999999999874210 124665542 222 11 1 112343344578889999999999975 7
Q ss_pred cCCc--eEEEEEecC
Q 037561 162 REGR--MKFMVLPLL 174 (179)
Q Consensus 162 ~~Gq--MKlaV~v~~ 174 (179)
-.+- |+-.|.|.+
T Consensus 620 Ga~H~~M~G~~iVep 634 (635)
T PRK02888 620 HALHMEMRGRMLVEP 634 (635)
T ss_pred ccCcccceEEEEEEe
Confidence 7653 777777754
No 24
>KOG4671 consensus Brain cell membrane protein 1 (BCMP1) [General function prediction only]
Probab=71.47 E-value=6.9 Score=33.11 Aligned_cols=43 Identities=26% Similarity=0.461 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHhhhhhccccc--ccCcCCCccCCCCCCCCCC
Q 037561 5 SAHSLILILSAASMLTVSMANRGW--SYGFNNTYYWPWGPNNGSP 47 (179)
Q Consensus 5 ~~~~~~~~~~~~~~~~v~~a~~~~--~~~~~~~~~~~~~~~~~~~ 47 (179)
+.-.|++|++++++.-|.+|+|+| ...+-++-||.=...++.|
T Consensus 18 k~i~licl~~aial~IvAl~s~~Wl~as~~~q~Lw~~C~~~~~~~ 62 (201)
T KOG4671|consen 18 KLILLICLLSAIALDIVALASRGWLQASDQRQGLWWSCRKPASTH 62 (201)
T ss_pred hHHHHHHHHHHHHHHHHHhccchhhhcCCCCcceeeeecCcCCcC
Confidence 344567788999999999999999 6668888898654344433
No 25
>PLN03148 Blue copper-like protein; Provisional
Probab=70.38 E-value=3.3 Score=34.16 Aligned_cols=27 Identities=26% Similarity=0.583 Sum_probs=19.0
Q ss_pred cccccCcCCCccCCCCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCC
Q 037561 26 RGWSYGFNNTYYWPWGPNNGSPGSNNTNDDDDGPSKIVVGGSDNWH 71 (179)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~VGg~~GW~ 71 (179)
+.|..++||++| . +.+++.|||..=..
T Consensus 29 ~GW~~~~~Y~~W-A------------------~~k~F~VGD~LvF~ 55 (167)
T PLN03148 29 KGWNPGINYTLW-A------------------NNQTFYVGDLISFR 55 (167)
T ss_pred CCcCCCCChhHh-h------------------cCCCCccCCEEEEE
Confidence 359989999999 2 23667888866433
No 26
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=61.62 E-value=7.7 Score=29.40 Aligned_cols=84 Identities=10% Similarity=-0.012 Sum_probs=48.3
Q ss_pred CCEEeCCEEEEEeCCC---CCCCCCcceEEeCCcccCCc-CCCCCccceeeecCCCCcceEEEecC-cccEEEEeCCCCC
Q 037561 84 APFYVNDVLVFKYDPP---NDTVFPHSVYQLPNLWSYLR-CDLSRAKMIANTTQGGGDGFEFVLKR-WLPYYFACGERGG 158 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~---~~~~~~HsV~~V~~~~~Yd~-C~~s~~~~i~~~~~G~~~~f~v~L~~-~G~~YFiCg~~~g 158 (179)
.+++.||+|...+... ..++..|.+.+- .....|. .... ......|....|.++++. +|.+||-|...
T Consensus 28 I~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~-~~~~~DG~~~~~----~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~-- 100 (117)
T PF07732_consen 28 IRVREGDTVRITVTNNLDEPTSIHWHGLHQP-PSPWMDGVPGVT----QCPIAPGESFTYEFTANQQAGTYWYHSHVH-- 100 (117)
T ss_dssp EEEETTEEEEEEEEEESSSGBSEEEETSBST-TGGGGSGGTTTS----GSSBSTTEEEEEEEEESSCSEEEEEEECST--
T ss_pred EEEEcCCeeEEEEEeccccccccccceeeee-eeeecCCccccc----ceeEEeecceeeeEeeeccccceeEeeCCC--
Confidence 5688999999998854 122233333321 2201111 1100 111233444567899998 99999999998
Q ss_pred CCCcCCceEEEEEecCC
Q 037561 159 FHCREGRMKFMVLPLLR 175 (179)
Q Consensus 159 ~HC~~GqMKlaV~v~~~ 175 (179)
.+=..| |--++.|..+
T Consensus 101 ~~~~~G-L~G~~iV~~~ 116 (117)
T PF07732_consen 101 GQQVMG-LYGAIIVEPP 116 (117)
T ss_dssp THHHTT-EEEEEEEE-T
T ss_pred chhcCc-CEEEEEEcCC
Confidence 543488 7777666543
No 27
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=59.58 E-value=27 Score=33.21 Aligned_cols=82 Identities=13% Similarity=0.109 Sum_probs=50.9
Q ss_pred CCEEeCCEEEEEeCCC----CCCCCCcceEEeCCcccCCc-CCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCCC
Q 037561 84 APFYVNDVLVFKYDPP----NDTVFPHSVYQLPNLWSYLR-CDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGG 158 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~----~~~~~~HsV~~V~~~~~Yd~-C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~g 158 (179)
.+++.||.|++..... ..++.-|.+.+..+. ..|. -..+. .+| ..|..-.|+|+++.+|++||=|-..
T Consensus 34 i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~-~~DG~~~vtq-~~I---~PG~s~~y~f~~~~~Gt~wyH~H~~-- 106 (541)
T TIGR03388 34 IRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTP-WADGTAGVTQ-CAI---NPGETFIYNFVVDRPGTYFYHGHYG-- 106 (541)
T ss_pred EEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCc-ccCCCCcccc-CCc---CCCCEEEEEEEcCCCEEEEEEecch--
Confidence 5789999999977764 123455666543111 1111 00000 012 2344445688899999999999987
Q ss_pred CCCcCCceEEEEEec
Q 037561 159 FHCREGRMKFMVLPL 173 (179)
Q Consensus 159 ~HC~~GqMKlaV~v~ 173 (179)
.|-..| |.-.|.|.
T Consensus 107 ~q~~~G-l~G~liV~ 120 (541)
T TIGR03388 107 MQRSAG-LYGSLIVD 120 (541)
T ss_pred HHhhcc-ceEEEEEe
Confidence 888999 77666665
No 28
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=55.59 E-value=13 Score=32.37 Aligned_cols=81 Identities=19% Similarity=0.236 Sum_probs=47.6
Q ss_pred CchhhcCCCCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCC
Q 037561 76 YSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGE 155 (179)
Q Consensus 76 Yt~WA~~~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~ 155 (179)
|.-+......+-+|..+.|+-.+.+ +.|+-..- . -..+.=. -.|-...+.++.+++|.|+.+|.+
T Consensus 131 ~~~~t~n~l~lPv~~~V~f~ltS~D---ViHsF~IP-~-l~~k~d~----------iPG~~~~~~~~~~~~G~Y~g~Cae 195 (247)
T COG1622 131 YGIATVNELVLPVGRPVRFKLTSAD---VIHSFWIP-Q-LGGKIDA----------IPGMTTELWLTANKPGTYRGICAE 195 (247)
T ss_pred cCccccceEEEeCCCeEEEEEEech---hceeEEec-C-CCceeee----------cCCceEEEEEecCCCeEEEEEcHh
Confidence 3344443455667777777777653 23554432 1 1111100 112222346788999999999996
Q ss_pred CCCCCCcCCc--eEEEEEecCC
Q 037561 156 RGGFHCREGR--MKFMVLPLLR 175 (179)
Q Consensus 156 ~~g~HC~~Gq--MKlaV~v~~~ 175 (179)
- |-.|- |++.|.|.++
T Consensus 196 ~----CG~gH~~M~~~v~vvs~ 213 (247)
T COG1622 196 Y----CGPGHSFMRFKVIVVSQ 213 (247)
T ss_pred h----cCCCcccceEEEEEEcH
Confidence 4 88874 9999988764
No 29
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=52.81 E-value=20 Score=28.39 Aligned_cols=22 Identities=27% Similarity=0.143 Sum_probs=16.8
Q ss_pred Cccc-EEEEeCCCCCCCCcCCceEEEE
Q 037561 145 RWLP-YYFACGERGGFHCREGRMKFMV 170 (179)
Q Consensus 145 ~~G~-~YFiCg~~~g~HC~~GqMKlaV 170 (179)
++|. |=|+|+.| +|=. . ||-.+
T Consensus 101 ~~g~~Y~f~CSFP--GH~~-~-MkG~l 123 (125)
T TIGR02695 101 SAGEDYTFFCSFP--GHWA-M-MRGTV 123 (125)
T ss_pred CCCCcceEEEcCC--CcHH-h-ceEEE
Confidence 4675 99999999 9975 5 76554
No 30
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=51.17 E-value=22 Score=29.67 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=27.0
Q ss_pred eEEEecCcccEEEEeCCCCCCCCcCCc--eEEEEEecCC
Q 037561 139 FEFVLKRWLPYYFACGERGGFHCREGR--MKFMVLPLLR 175 (179)
Q Consensus 139 f~v~L~~~G~~YFiCg~~~g~HC~~Gq--MKlaV~v~~~ 175 (179)
..++.+++|.++..|++- |-.|- |++.|.|.+.
T Consensus 158 ~~~~~~~~G~y~g~C~e~----CG~~H~~M~~~v~v~~~ 192 (194)
T MTH00047 158 LFFCPDRHGVFVGYCSEL----CGVGHSYMPIVIEVVDV 192 (194)
T ss_pred EEEEcCCCEEEEEEeehh----hCcCcccCcEEEEEEcC
Confidence 366778999999999964 98873 9999888764
No 31
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=47.77 E-value=28 Score=28.65 Aligned_cols=32 Identities=31% Similarity=0.394 Sum_probs=25.3
Q ss_pred eEEEecCcccEEEEeCCCCCCCCcCC--ceEEEEEecC
Q 037561 139 FEFVLKRWLPYYFACGERGGFHCREG--RMKFMVLPLL 174 (179)
Q Consensus 139 f~v~L~~~G~~YFiCg~~~g~HC~~G--qMKlaV~v~~ 174 (179)
..++.+++|.|+..|++- |-.| .|++.|.|.+
T Consensus 159 ~~~~~~~~G~y~~~c~e~----cG~~h~~M~~~v~v~~ 192 (201)
T TIGR02866 159 LWFNADEPGVYYGYCAEL----CGAGHSLMLFKVVVVE 192 (201)
T ss_pred EEEEeCCCEEEEEEehhh----CCcCccCCeEEEEEEC
Confidence 367889999999999974 6654 2888888765
No 32
>PLN00115 pollen allergen group 3; Provisional
Probab=45.69 E-value=19 Score=28.03 Aligned_cols=24 Identities=25% Similarity=0.337 Sum_probs=17.6
Q ss_pred CcchhhHHHHHHHHHHHHhhhhhccc
Q 037561 1 MAFTSAHSLILILSAASMLTVSMANR 26 (179)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~v~~a~~ 26 (179)
|+..|+ |++.+..|+||+|+.+++
T Consensus 1 ~~~~~~--~~~~~~~a~l~~~~~~g~ 24 (118)
T PLN00115 1 MSSLSF--LLLAVALAALFAVGSCAT 24 (118)
T ss_pred CchhHH--HHHHHHHHHHhhhhhcCC
Confidence 455554 555578999999998876
No 33
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=43.33 E-value=13 Score=22.69 Aligned_cols=18 Identities=17% Similarity=0.599 Sum_probs=9.8
Q ss_pred CchhhcCCCCEEeCCEEEE
Q 037561 76 YSVWAFQNAPFYVNDVLVF 94 (179)
Q Consensus 76 Yt~WA~~~ktF~VGDtLvF 94 (179)
|.+|.. ++....||.+.|
T Consensus 1 ~p~W~~-~~~Y~~Gd~V~~ 18 (41)
T PF02839_consen 1 YPAWDP-GTTYNAGDRVSY 18 (41)
T ss_dssp --B--T-TCEE-TT-EEEE
T ss_pred CCCcCC-CCEEcCCCEEEE
Confidence 568998 488999999875
No 34
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=42.69 E-value=38 Score=28.63 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=26.7
Q ss_pred cceEEEecCcccEEEEeCCCCCCCCcCCc--eEEEEEecC
Q 037561 137 DGFEFVLKRWLPYYFACGERGGFHCREGR--MKFMVLPLL 174 (179)
Q Consensus 137 ~~f~v~L~~~G~~YFiCg~~~g~HC~~Gq--MKlaV~v~~ 174 (179)
....++.++||.++..|++- |-.|- |++.|.|.+
T Consensus 180 ~~~~~~~~~~g~y~~~C~e~----CG~~H~~M~~~v~v~~ 215 (228)
T MTH00140 180 NQLSFEPKRPGVFYGQCSEI----CGANHSFMPIVVEAVP 215 (228)
T ss_pred eeEEEEeCCCEEEEEECccc----cCcCcCCCeEEEEEEC
Confidence 33467788999999999975 88873 888888765
No 35
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=40.60 E-value=40 Score=27.74 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=24.7
Q ss_pred EEEecCcccEEEEeCCCCCCCCcCCc--eEEEEEecC
Q 037561 140 EFVLKRWLPYYFACGERGGFHCREGR--MKFMVLPLL 174 (179)
Q Consensus 140 ~v~L~~~G~~YFiCg~~~g~HC~~Gq--MKlaV~v~~ 174 (179)
.+..+++|.+|..|++- |-.|- |.+.|.|.+
T Consensus 116 ~~~~~~~G~y~gqCsEl----CG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 116 NTFILREGVFYGQCSEM----CGTLHGFMPIVVEAVS 148 (162)
T ss_pred EEecCCCeEEEEEcchh----cCcCccCceEEEEEeC
Confidence 56678999999999975 87663 888887764
No 36
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=39.90 E-value=42 Score=28.50 Aligned_cols=32 Identities=19% Similarity=0.463 Sum_probs=25.8
Q ss_pred eEEEecCcccEEEEeCCCCCCCCcCCc--eEEEEEecC
Q 037561 139 FEFVLKRWLPYYFACGERGGFHCREGR--MKFMVLPLL 174 (179)
Q Consensus 139 f~v~L~~~G~~YFiCg~~~g~HC~~Gq--MKlaV~v~~ 174 (179)
+.++.+++|.+|..|++- |-.|- |++.|.|.+
T Consensus 182 ~~~~~~~~G~y~g~Cse~----CG~~H~~M~~~v~vv~ 215 (227)
T MTH00154 182 LNFLINRPGLFFGQCSEI----CGANHSFMPIVIESVS 215 (227)
T ss_pred EEEEEcCceEEEEEeech----hCcCccCCeEEEEEeC
Confidence 467789999999999975 87763 888888764
No 37
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=37.81 E-value=45 Score=28.22 Aligned_cols=32 Identities=25% Similarity=0.409 Sum_probs=26.0
Q ss_pred eEEEecCcccEEEEeCCCCCCCCcCCc--eEEEEEecC
Q 037561 139 FEFVLKRWLPYYFACGERGGFHCREGR--MKFMVLPLL 174 (179)
Q Consensus 139 f~v~L~~~G~~YFiCg~~~g~HC~~Gq--MKlaV~v~~ 174 (179)
+.+..+++|.+|..|++- |-.|- |++.|.|.+
T Consensus 182 ~~~~~~~~G~~~g~CsE~----CG~~Hs~M~~~v~vv~ 215 (225)
T MTH00168 182 LAFLSSRPGSFYGQCSEI----CGANHSFMPIVVEFVP 215 (225)
T ss_pred EEEEcCCCEEEEEEcccc----cCcCcCCCeEEEEEeC
Confidence 366788999999999975 88874 888888765
No 38
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=35.46 E-value=49 Score=28.20 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=25.2
Q ss_pred eEEEecCcccEEEEeCCCCCCCCcCCc--eEEEEEecC
Q 037561 139 FEFVLKRWLPYYFACGERGGFHCREGR--MKFMVLPLL 174 (179)
Q Consensus 139 f~v~L~~~G~~YFiCg~~~g~HC~~Gq--MKlaV~v~~ 174 (179)
..+..++||.+|..|++- |-.|- |++.|.|.+
T Consensus 182 ~~~~~~~~G~~~g~C~e~----CG~~H~~M~~~v~vv~ 215 (230)
T MTH00129 182 TAFIASRPGVFYGQCSEI----CGANHSFMPIVVEAVP 215 (230)
T ss_pred EEEEeCCceEEEEEChhh----ccccccCCcEEEEEEC
Confidence 356788999999999975 87763 888888764
No 39
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=35.19 E-value=51 Score=27.84 Aligned_cols=32 Identities=25% Similarity=0.454 Sum_probs=26.1
Q ss_pred eEEEecCcccEEEEeCCCCCCCCcCCc--eEEEEEecC
Q 037561 139 FEFVLKRWLPYYFACGERGGFHCREGR--MKFMVLPLL 174 (179)
Q Consensus 139 f~v~L~~~G~~YFiCg~~~g~HC~~Gq--MKlaV~v~~ 174 (179)
+.++.++||.+|..|++- |-.|- |++.|.|.+
T Consensus 182 ~~~~~~~~G~y~g~CsE~----CG~~Hs~M~~~v~vv~ 215 (226)
T MTH00139 182 VGFFINRPGVFYGQCSEI----CGANHSFMPIVVEAIS 215 (226)
T ss_pred EEEEcCCCEEEEEEChhh----cCcCcCCCeEEEEEeC
Confidence 367788999999999975 88874 888888765
No 40
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=34.59 E-value=64 Score=27.37 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=25.7
Q ss_pred eEEEecCcccEEEEeCCCCCCCCcCCc--eEEEEEecC
Q 037561 139 FEFVLKRWLPYYFACGERGGFHCREGR--MKFMVLPLL 174 (179)
Q Consensus 139 f~v~L~~~G~~YFiCg~~~g~HC~~Gq--MKlaV~v~~ 174 (179)
..+..++||.+|-.|++- |-.|- |++.|.|.+
T Consensus 182 ~~~~~~~~G~y~g~CsE~----CG~~Hs~M~~~v~vv~ 215 (227)
T MTH00117 182 TSFITTRPGVFYGQCSEI----CGANHSFMPIVVESVP 215 (227)
T ss_pred EEEEEcccceEEEEeccc----cccCccCCeEEEEEcC
Confidence 367788999999999975 87763 888888764
No 41
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=34.41 E-value=24 Score=25.38 Aligned_cols=13 Identities=38% Similarity=0.766 Sum_probs=10.9
Q ss_pred CCCEEeCCEEEEE
Q 037561 83 NAPFYVNDVLVFK 95 (179)
Q Consensus 83 ~ktF~VGDtLvF~ 95 (179)
.+.|+|||.|+++
T Consensus 26 DRdf~VGD~L~L~ 38 (72)
T PF12961_consen 26 DRDFQVGDILVLR 38 (72)
T ss_pred CCCCCCCCEEEEE
Confidence 3689999999875
No 42
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=32.55 E-value=64 Score=27.45 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=25.3
Q ss_pred eEEEecCcccEEEEeCCCCCCCCcCCc--eEEEEEecC
Q 037561 139 FEFVLKRWLPYYFACGERGGFHCREGR--MKFMVLPLL 174 (179)
Q Consensus 139 f~v~L~~~G~~YFiCg~~~g~HC~~Gq--MKlaV~v~~ 174 (179)
..+..++||.+|..|++- |-.|- |.+.|.+.+
T Consensus 182 ~~~~~~~~G~~~g~Cse~----CG~~H~~M~~~v~v~~ 215 (227)
T MTH00098 182 TTLMSTRPGLYYGQCSEI----CGSNHSFMPIVLELVP 215 (227)
T ss_pred EEEecCCcEEEEEECccc----cCcCcCCceEEEEEeC
Confidence 366788999999999975 87763 888887764
No 43
>PLN02191 L-ascorbate oxidase
Probab=31.84 E-value=1.1e+02 Score=29.41 Aligned_cols=82 Identities=10% Similarity=0.028 Sum_probs=52.3
Q ss_pred CCEEeCCEEEEEeCCC----CCCCCCcceEEeCCcccCCc-CCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCCC
Q 037561 84 APFYVNDVLVFKYDPP----NDTVFPHSVYQLPNLWSYLR-CDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGG 158 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~----~~~~~~HsV~~V~~~~~Yd~-C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~g 158 (179)
.+++.||+|+.+.... ..++.-|.+.+- ...-.|. -..+. .+| ..|..-.|+|+++.+|++||=|-..
T Consensus 56 i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~-~~~~~DGv~gvtq-~pI---~PG~s~~Y~f~~~~~GT~wYHsH~~-- 128 (574)
T PLN02191 56 IDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQK-GSPWADGAAGVTQ-CAI---NPGETFTYKFTVEKPGTHFYHGHYG-- 128 (574)
T ss_pred EEEEcCCEEEEEEEECCCCCCccEECCCCCCC-CCccccCCCcccc-CCc---CCCCeEEEEEECCCCeEEEEeeCcH--
Confidence 5799999999887764 234566777653 2211221 00110 012 3454456789999999999999987
Q ss_pred CCCcCCceEEEEEec
Q 037561 159 FHCREGRMKFMVLPL 173 (179)
Q Consensus 159 ~HC~~GqMKlaV~v~ 173 (179)
.+-..| |.-.+.|.
T Consensus 129 ~q~~~G-l~G~liV~ 142 (574)
T PLN02191 129 MQRSAG-LYGSLIVD 142 (574)
T ss_pred HHHhCC-CEEEEEEc
Confidence 788888 76666653
No 44
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=31.72 E-value=42 Score=25.70 Aligned_cols=15 Identities=20% Similarity=0.228 Sum_probs=12.0
Q ss_pred CCEEeCCEEEEEeCC
Q 037561 84 APFYVNDVLVFKYDP 98 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~ 98 (179)
+.|++||.|+|.=-.
T Consensus 30 ~~ikvGD~I~f~~~~ 44 (109)
T cd06555 30 QQIKVGDKILFNDLD 44 (109)
T ss_pred hcCCCCCEEEEEEcC
Confidence 469999999996543
No 45
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=31.45 E-value=75 Score=27.01 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=25.9
Q ss_pred eEEEecCcccEEEEeCCCCCCCCcCCc--eEEEEEecC
Q 037561 139 FEFVLKRWLPYYFACGERGGFHCREGR--MKFMVLPLL 174 (179)
Q Consensus 139 f~v~L~~~G~~YFiCg~~~g~HC~~Gq--MKlaV~v~~ 174 (179)
..++.+++|.+|..|++- |-.|- |++.|.+.+
T Consensus 182 ~~~~~~~~G~~~g~Cse~----CG~~Hs~M~~~v~vv~ 215 (229)
T MTH00038 182 TTFFISRTGLFYGQCSEI----CGANHSFMPIVIESVP 215 (229)
T ss_pred EEEEcCCCEEEEEEcccc----cCcCcCCCeEEEEEeC
Confidence 367788999999999975 88874 888888764
No 46
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=27.34 E-value=2.1e+02 Score=28.04 Aligned_cols=79 Identities=19% Similarity=0.088 Sum_probs=52.1
Q ss_pred CCEEeCCEEEEEeCCC---CCCCCCcceEEeCCcccCC-----cCCCCCccceeeecCCCCcceEEEec-CcccEEEEeC
Q 037561 84 APFYVNDVLVFKYDPP---NDTVFPHSVYQLPNLWSYL-----RCDLSRAKMIANTTQGGGDGFEFVLK-RWLPYYFACG 154 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~---~~~~~~HsV~~V~~~~~Yd-----~C~~s~~~~i~~~~~G~~~~f~v~L~-~~G~~YFiCg 154 (179)
.+++.||+|+.+.... +.++.-|.+.|-.+ ...| .|- | ..|..-.|+|+++ .+|++|+=+-
T Consensus 62 I~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t-~w~DGv~~TQcP------I---~PG~sftY~F~~~dq~GT~WYHsH 131 (596)
T PLN00044 62 LNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKS-AWQDGVGGTNCA------I---PAGWNWTYQFQVKDQVGSFFYAPS 131 (596)
T ss_pred EEEECCCEEEEEEEeCCCCCccEEECCccCCCC-ccccCCCCCcCC------c---CCCCcEEEEEEeCCCCceeEeecc
Confidence 5788999999876544 33456678776422 1122 242 3 2344455788884 7999999998
Q ss_pred CCCCCCCcCCceEEEEEecCC
Q 037561 155 ERGGFHCREGRMKFMVLPLLR 175 (179)
Q Consensus 155 ~~~g~HC~~GqMKlaV~v~~~ 175 (179)
.. .+-..| +.-+|.|..+
T Consensus 132 ~~--~Q~~~G-l~GalII~~~ 149 (596)
T PLN00044 132 TA--LHRAAG-GYGAITINNR 149 (596)
T ss_pred ch--hhhhCc-CeeEEEEcCc
Confidence 87 777788 7666666543
No 47
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=26.91 E-value=1.7e+02 Score=28.51 Aligned_cols=93 Identities=15% Similarity=0.229 Sum_probs=55.2
Q ss_pred CCCCC-CCchhhcCCCCEEeCCEEEEEeCCCC---CCCCCcce-EEeCCcc-cCCcCCCCCccceeeecCCCCcceEEEe
Q 037561 70 WHFGF-NYSVWAFQNAPFYVNDVLVFKYDPPN---DTVFPHSV-YQLPNLW-SYLRCDLSRAKMIANTTQGGGDGFEFVL 143 (179)
Q Consensus 70 W~~~~-~Yt~WA~~~ktF~VGDtLvF~Y~~~~---~~~~~HsV-~~V~~~~-~Yd~C~~s~~~~i~~~~~G~~~~f~v~L 143 (179)
|+++- .|... . ..+++.||.+.+.+.... +...-|.. +++.+.. .+.. ..- ......|....+.|.+
T Consensus 488 wtiNG~~~~~~-~-pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~~~~---~~d--Tv~V~Pg~t~~~~f~a 560 (587)
T TIGR01480 488 WSFDGEAFGLK-T-PLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQGEFQV---RKH--TVDVPPGGKRSFRVTA 560 (587)
T ss_pred EEECCccCCCC-C-ceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCCcccc---cCC--ceeeCCCCEEEEEEEC
Confidence 88864 34432 2 257999999999998752 22333443 2331111 1110 000 1122344444568888
Q ss_pred cCcccEEEEeCCCCCCCCcCCceEEEEEe
Q 037561 144 KRWLPYYFACGERGGFHCREGRMKFMVLP 172 (179)
Q Consensus 144 ~~~G~~YFiCg~~~g~HC~~GqMKlaV~v 172 (179)
+.||.++|=|-.. .|=+.| |--.|.|
T Consensus 561 d~pG~w~~HCH~l--~H~~~G-M~~~~~v 586 (587)
T TIGR01480 561 DALGRWAYHCHML--LHMEAG-MFREVTV 586 (587)
T ss_pred CCCeEEEEcCCCH--HHHhCc-CcEEEEe
Confidence 9999999999988 899999 6555544
No 48
>PF08980 DUF1883: Domain of unknown function (DUF1883); InterPro: IPR015073 This family consist of hypothetical bacterial proteins. ; PDB: 2B1Y_A.
Probab=26.52 E-value=12 Score=28.13 Aligned_cols=78 Identities=12% Similarity=0.114 Sum_probs=17.9
Q ss_pred CEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCc-CCCCCccceee-ecCCCCcceEEEecCcccEEEEeCCCCCCCCc
Q 037561 85 PFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLR-CDLSRAKMIAN-TTQGGGDGFEFVLKRWLPYYFACGERGGFHCR 162 (179)
Q Consensus 85 tF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~-C~~s~~~~i~~-~~~G~~~~f~v~L~~~G~~YFiCg~~~g~HC~ 162 (179)
..+-||+++..-+.. -+|.++ +...|.+ ++....+.+.. ++.-+ ..|+++..|..|.+=.. |+.
T Consensus 10 ~~~~Gd~V~V~ls~~------~nV~LM-d~~Nf~~y~~g~~~~y~GG~~~~~P---a~i~VP~sG~W~vvID~----~g~ 75 (94)
T PF08980_consen 10 HLKRGDTVVVRLSHQ------ANVRLM-DDSNFQRYKNGRRFKYIGGVAKRSP---ARITVPYSGHWNVVIDS----HGQ 75 (94)
T ss_dssp ---TT-------SSS--------------HHHHHHHHHHTT---S-----SSS---------SSS------------TTS
T ss_pred ccCCCCEEEEEeCCc------ccEEEc-ChhHhhhhccCCcceEEeeecccCc---eEEECCCCceEEEEEEC----CCC
Confidence 577899999999874 788888 8888875 55443221211 12222 37888889998888774 577
Q ss_pred CCceEEEEEecCCC
Q 037561 163 EGRMKFMVLPLLRR 176 (179)
Q Consensus 163 ~GqMKlaV~v~~~p 176 (179)
.|..+..|.|++.|
T Consensus 76 ~~~~~~si~v~p~~ 89 (94)
T PF08980_consen 76 SGEVEHSISVIPPA 89 (94)
T ss_dssp SS------------
T ss_pred cEEEEEEEEecCCc
Confidence 77445677776433
No 49
>PLN02835 oxidoreductase
Probab=26.22 E-value=2.3e+02 Score=27.13 Aligned_cols=81 Identities=10% Similarity=-0.076 Sum_probs=50.1
Q ss_pred CCEEeCCEEEEEeCCC---CCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEe-cCcccEEEEeCCCCCC
Q 037561 84 APFYVNDVLVFKYDPP---NDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVL-KRWLPYYFACGERGGF 159 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~---~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L-~~~G~~YFiCg~~~g~ 159 (179)
.+++.||+|+.+.... ..++.-|.+.+- .....|.=-.+. .+| ..|.+-.|+|++ +.+|++|+=|-.. .
T Consensus 62 I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~-~~~~~DGv~~tQ-~pI---~PG~sf~Y~F~~~~q~GT~WYHsH~~--~ 134 (539)
T PLN02835 62 LDVVTNDNIILNLINKLDQPFLLTWNGIKQR-KNSWQDGVLGTN-CPI---PPNSNYTYKFQTKDQIGTFTYFPSTL--F 134 (539)
T ss_pred EEEECCCEEEEEEEeCCCCCCcEEeCCcccC-CCCCCCCCccCc-CCC---CCCCcEEEEEEECCCCEeEEEEeCcc--c
Confidence 5789999999887655 333566777764 222223200010 013 245555678887 4799999999876 7
Q ss_pred CCcCCceEEEEEe
Q 037561 160 HCREGRMKFMVLP 172 (179)
Q Consensus 160 HC~~GqMKlaV~v 172 (179)
+-..| |.-.+.|
T Consensus 135 q~~~G-l~G~lIV 146 (539)
T PLN02835 135 HKAAG-GFGAINV 146 (539)
T ss_pred hhcCc-ccceeEE
Confidence 77778 6555554
No 50
>COG4233 Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=25.89 E-value=3.1e+02 Score=24.45 Aligned_cols=65 Identities=20% Similarity=0.286 Sum_probs=43.7
Q ss_pred hhhcCCCCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCC
Q 037561 78 VWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERG 157 (179)
Q Consensus 78 ~WA~~~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~ 157 (179)
.|-.- ++|..|+..-|-|+.. |..+ ..+. .+.|.. .++|+. ..+|-+|+.-
T Consensus 92 ~wPtP-~~f~~g~~~~~GY~~~--------VslP--------------~~~~-~~~~~~---~~tlra-~vflg~Ce~i- 142 (273)
T COG4233 92 HWPTP-KRFEEGGITDFGYKDP--------VSLP--------------VDVK-ATRGAL---PATLRA-QVFLGVCENI- 142 (273)
T ss_pred ecCCC-eEecCCCceeeeccCc--------EEEE--------------EEEE-ecCCCC---ceEEEE-EEEEEeecCe-
Confidence 46663 7899999999999854 5443 1122 223333 466664 6899999965
Q ss_pred CCCCcCCceEEEEEecC
Q 037561 158 GFHCREGRMKFMVLPLL 174 (179)
Q Consensus 158 g~HC~~GqMKlaV~v~~ 174 (179)
|.-+|-||.+..-+
T Consensus 143 ---CiP~~~~~sl~lp~ 156 (273)
T COG4233 143 ---CIPVQAKFSLVLPS 156 (273)
T ss_pred ---eeccccceeeecCc
Confidence 99997788876543
No 51
>PRK11878 psaM photosystem I reaction center subunit XII; Reviewed
Probab=25.79 E-value=88 Score=19.43 Aligned_cols=25 Identities=12% Similarity=0.332 Sum_probs=16.0
Q ss_pred CcchhhHHHH--HHHHHHHHhhhhhcc
Q 037561 1 MAFTSAHSLI--LILSAASMLTVSMAN 25 (179)
Q Consensus 1 m~~~~~~~~~--~~~~~~~~~~v~~a~ 25 (179)
|.++..|.++ ++.+.++.+|+-++.
T Consensus 3 ~~isd~Qi~iaL~~Al~~giLA~RLG~ 29 (34)
T PRK11878 3 PSLTDTQVFVALVVALHAGVLALRLGT 29 (34)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788873 334467777776653
No 52
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=25.68 E-value=95 Score=26.40 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=25.1
Q ss_pred eEEEecCcccEEEEeCCCCCCCCcCCc--eEEEEEecC
Q 037561 139 FEFVLKRWLPYYFACGERGGFHCREGR--MKFMVLPLL 174 (179)
Q Consensus 139 f~v~L~~~G~~YFiCg~~~g~HC~~Gq--MKlaV~v~~ 174 (179)
+.+..+++|.+|..|++- |-.|- |++.|.+.+
T Consensus 182 ~~~~~~~~G~~~g~C~e~----CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00076 182 TSFIASRPGVYYGQCSEI----CGANHSFMPIVVEATP 215 (228)
T ss_pred EEEEeCCcEEEEEEChhh----cCccccCCceEEEEeC
Confidence 367788999999999975 77763 888887764
No 53
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=25.60 E-value=95 Score=26.39 Aligned_cols=31 Identities=23% Similarity=0.411 Sum_probs=24.7
Q ss_pred EEEecCcccEEEEeCCCCCCCCcCCc--eEEEEEecC
Q 037561 140 EFVLKRWLPYYFACGERGGFHCREGR--MKFMVLPLL 174 (179)
Q Consensus 140 ~v~L~~~G~~YFiCg~~~g~HC~~Gq--MKlaV~v~~ 174 (179)
.+..+++|.+|..|++- |-.|- |.+.|.+.+
T Consensus 183 ~~~~~~~G~~~g~Cse~----CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00008 183 GFTITRPGVFYGQCSEI----CGANHSFMPIVLEAVD 215 (228)
T ss_pred EEEeCCCEEEEEEChhh----cCcCccCceeEEEEEC
Confidence 56788999999999975 87763 888887654
No 54
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=24.82 E-value=92 Score=26.57 Aligned_cols=31 Identities=26% Similarity=0.470 Sum_probs=25.0
Q ss_pred EEEecCcccEEEEeCCCCCCCCcCCc--eEEEEEecC
Q 037561 140 EFVLKRWLPYYFACGERGGFHCREGR--MKFMVLPLL 174 (179)
Q Consensus 140 ~v~L~~~G~~YFiCg~~~g~HC~~Gq--MKlaV~v~~ 174 (179)
.+..+++|.+|..|++- |-.|- |.+.|.+.+
T Consensus 187 ~~~~~~~G~y~g~Cse~----CG~~Hs~M~i~v~vv~ 219 (234)
T MTH00051 187 SFFIKRPGVFYGQCSEI----CGANHSFMPIVIEGVS 219 (234)
T ss_pred EEEeCCCEEEEEEChhh----cCcccccCeeEEEEEC
Confidence 56788999999999975 87763 888888764
No 55
>PLN02792 oxidoreductase
Probab=24.48 E-value=2.4e+02 Score=27.10 Aligned_cols=84 Identities=11% Similarity=-0.052 Sum_probs=0.0
Q ss_pred CEEeCCEEEEEeCCC---CCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEe-cCcccEEEEeCCCCCCC
Q 037561 85 PFYVNDVLVFKYDPP---NDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVL-KRWLPYYFACGERGGFH 160 (179)
Q Consensus 85 tF~VGDtLvF~Y~~~---~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L-~~~G~~YFiCg~~~g~H 160 (179)
+++.||+|+.+.... ..++.-|.+.|- .....|. .... -.....|.+-.|+|++ +.+|++|+=|-.. .+
T Consensus 50 ~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~-~~~~~DG--v~~t--qcPI~PG~sftY~F~~~~q~GT~WYHsH~~--~q 122 (536)
T PLN02792 50 RSLTNDNLVINVHNDLDEPFLLSWNGVHMR-KNSYQDG--VYGT--TCPIPPGKNYTYDFQVKDQVGSYFYFPSLA--VQ 122 (536)
T ss_pred EEECCCEEEEEEEeCCCCCcCEeCCCcccC-CCCccCC--CCCC--cCccCCCCcEEEEEEeCCCccceEEecCcc--hh
Q ss_pred CcCCceEEEEEecCCC
Q 037561 161 CREGRMKFMVLPLLRR 176 (179)
Q Consensus 161 C~~GqMKlaV~v~~~p 176 (179)
-..| +.-.+.+..+|
T Consensus 123 ~~~G-l~G~liI~~~~ 137 (536)
T PLN02792 123 KAAG-GYGSLRIYSLP 137 (536)
T ss_pred hhcc-cccceEEeCCc
No 56
>PHA02633 hypothetical protein; Provisional
Probab=23.92 E-value=48 Score=23.31 Aligned_cols=26 Identities=19% Similarity=0.070 Sum_probs=17.9
Q ss_pred cccEEEEeCCCCCCCCcCCceEEEEEecCC
Q 037561 146 WLPYYFACGERGGFHCREGRMKFMVLPLLR 175 (179)
Q Consensus 146 ~G~~YFiCg~~~g~HC~~GqMKlaV~v~~~ 175 (179)
.|. |||.+.+..+|..+ ++.+.|...
T Consensus 30 SGi--YiC~~rn~t~c~~~--si~l~V~~~ 55 (63)
T PHA02633 30 SGI--YMCITKNETYSDMM--KFDLCICLR 55 (63)
T ss_pred CcE--EEEEEcCCCeeEEE--EEEEEEeec
Confidence 455 57777777999996 666666544
No 57
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=23.88 E-value=1.1e+02 Score=26.00 Aligned_cols=32 Identities=16% Similarity=0.085 Sum_probs=26.0
Q ss_pred eEEEecCcccEEEEeCCCCCCCCcCCc--eEEEEEecC
Q 037561 139 FEFVLKRWLPYYFACGERGGFHCREGR--MKFMVLPLL 174 (179)
Q Consensus 139 f~v~L~~~G~~YFiCg~~~g~HC~~Gq--MKlaV~v~~ 174 (179)
+.++.+++|.|+-.|.+- |-.|- |++.|.|.+
T Consensus 181 ~~~~~~~~G~y~g~CaE~----CG~~Ha~M~~~V~v~~ 214 (226)
T TIGR01433 181 LHLIANEPGVYDGISANY----SGPGFSGMKFKAIATD 214 (226)
T ss_pred EEEEeCCCEEEEEEchhh----cCcCccCCeEEEEEEC
Confidence 367889999999999964 88763 888888765
No 58
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=23.28 E-value=1.2e+02 Score=25.97 Aligned_cols=31 Identities=26% Similarity=0.479 Sum_probs=25.3
Q ss_pred EEEecCcccEEEEeCCCCCCCCcCCc--eEEEEEecC
Q 037561 140 EFVLKRWLPYYFACGERGGFHCREGR--MKFMVLPLL 174 (179)
Q Consensus 140 ~v~L~~~G~~YFiCg~~~g~HC~~Gq--MKlaV~v~~ 174 (179)
.++.++||.++..|++- |-.|- |++.|.|.+
T Consensus 194 ~~~~~~~G~y~g~C~e~----CG~~Hs~M~~~v~vv~ 226 (240)
T MTH00023 194 GFFIKRPGVFYGQCSEI----CGANHSFMPIVIEAVS 226 (240)
T ss_pred EEEcCCCEEEEEEchhh----cCcCccCCeEEEEEEC
Confidence 56788999999999964 88874 888888764
No 59
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=22.30 E-value=2.8e+02 Score=19.31 Aligned_cols=15 Identities=13% Similarity=0.310 Sum_probs=13.5
Q ss_pred CEEeCCEEEEEeCCC
Q 037561 85 PFYVNDVLVFKYDPP 99 (179)
Q Consensus 85 tF~VGDtLvF~Y~~~ 99 (179)
.|++||.|.|.+..+
T Consensus 2 ~~~~Ge~v~~~~~~~ 16 (83)
T PF14326_consen 2 VYRVGERVRFRVTSN 16 (83)
T ss_pred cccCCCEEEEEEEeC
Confidence 689999999999986
No 60
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=22.15 E-value=1.3e+02 Score=27.77 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=15.9
Q ss_pred CCCCcceEEEecCcccEEEEeCCC
Q 037561 133 QGGGDGFEFVLKRWLPYYFACGER 156 (179)
Q Consensus 133 ~G~~~~f~v~L~~~G~~YFiCg~~ 156 (179)
.|.+..++++| +||.|-|+|+..
T Consensus 84 PG~s~~l~~~L-~pGtY~~~C~~~ 106 (375)
T PRK10378 84 PGFSQKMTANL-QPGEYDMTCGLL 106 (375)
T ss_pred CCCceEEEEec-CCceEEeecCcC
Confidence 34333456677 699999999653
No 61
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=21.23 E-value=1.4e+02 Score=24.99 Aligned_cols=32 Identities=16% Similarity=-0.002 Sum_probs=26.2
Q ss_pred eEEEecCcccEEEEeCCCCCCCCcCCc--eEEEEEecC
Q 037561 139 FEFVLKRWLPYYFACGERGGFHCREGR--MKFMVLPLL 174 (179)
Q Consensus 139 f~v~L~~~G~~YFiCg~~~g~HC~~Gq--MKlaV~v~~ 174 (179)
..++.+++|.++-.|++- |-.|- |++.|.|.+
T Consensus 172 ~~~~~~~~G~y~g~Cae~----CG~~Hs~M~~~v~v~~ 205 (217)
T TIGR01432 172 WYLQADQVGTYRGRNANF----NGEGFADQTFDVNAVS 205 (217)
T ss_pred EEEEeCCCEEEEEEehhh----cCccccCCeEEEEEeC
Confidence 367888999999999964 88763 899988765
No 62
>PLN02354 copper ion binding / oxidoreductase
Probab=20.88 E-value=3.6e+02 Score=25.97 Aligned_cols=84 Identities=11% Similarity=-0.106 Sum_probs=0.0
Q ss_pred CEEeCCEEEEEeCCC---CCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEe-cCcccEEEEeCCCCCCC
Q 037561 85 PFYVNDVLVFKYDPP---NDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVL-KRWLPYYFACGERGGFH 160 (179)
Q Consensus 85 tF~VGDtLvF~Y~~~---~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L-~~~G~~YFiCg~~~g~H 160 (179)
+++.||+|+.+.... +.++.-|.+.|- .....|. -.. . --....|.+-.|+|++ +.+|++|+=|-.. .+
T Consensus 61 ~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~-~~~~~DG-v~~-T--QcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~--~Q 133 (552)
T PLN02354 61 NSTSNNNIVINVFNNLDEPFLLTWSGIQQR-KNSWQDG-VPG-T--NCPIPPGTNFTYHFQPKDQIGSYFYYPSTG--MH 133 (552)
T ss_pred EEeCCCEEEEEEEECCCCCcccccccccCC-CCcccCC-CcC-C--cCCCCCCCcEEEEEEeCCCCcceEEecCcc--ce
Q ss_pred CcCCceEEEEEecCCC
Q 037561 161 CREGRMKFMVLPLLRR 176 (179)
Q Consensus 161 C~~GqMKlaV~v~~~p 176 (179)
-..| |.-++.|..+.
T Consensus 134 ~~~G-l~G~lII~~~~ 148 (552)
T PLN02354 134 RAAG-GFGGLRVNSRL 148 (552)
T ss_pred ecCC-ccceEEEcCCc
No 63
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.81 E-value=1.5e+02 Score=26.00 Aligned_cols=32 Identities=28% Similarity=0.455 Sum_probs=25.7
Q ss_pred eEEEecCcccEEEEeCCCCCCCCcCCc--eEEEEEecC
Q 037561 139 FEFVLKRWLPYYFACGERGGFHCREGR--MKFMVLPLL 174 (179)
Q Consensus 139 f~v~L~~~G~~YFiCg~~~g~HC~~Gq--MKlaV~v~~ 174 (179)
+.+..+++|.+|-.|++- |-.|- |.+.|.+.+
T Consensus 216 ~~~~~~~~G~y~g~CsE~----CG~~Hs~Mpi~v~vv~ 249 (262)
T MTH00027 216 TGFLIKRPGIFYGQCSEI----CGANHSFMPIVVESVS 249 (262)
T ss_pred EEEEcCCcEEEEEEcchh----cCcCcCCCeEEEEEEC
Confidence 367788999999999965 87763 888888765
No 64
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=20.36 E-value=3.5e+02 Score=25.68 Aligned_cols=83 Identities=16% Similarity=0.063 Sum_probs=0.0
Q ss_pred CEEeCCEEEEEeCCC---CCCCCCcceEEeCCc-ccCCcCCCCCccceeeecCCCCcceEEEec-CcccEEEEeCCCCCC
Q 037561 85 PFYVNDVLVFKYDPP---NDTVFPHSVYQLPNL-WSYLRCDLSRAKMIANTTQGGGDGFEFVLK-RWLPYYFACGERGGF 159 (179)
Q Consensus 85 tF~VGDtLvF~Y~~~---~~~~~~HsV~~V~~~-~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~-~~G~~YFiCg~~~g~ 159 (179)
+++.||+|+.+.... +.++.-|.+.+..+. .|=-..-..-+ | ..|....|+|+++ .+|++||=|-..
T Consensus 37 ~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~p--I---~PG~s~~Y~f~~~~~~GT~WYHsH~~--- 108 (539)
T TIGR03389 37 YAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCP--I---QPGQSYVYNFTITGQRGTLWWHAHIS--- 108 (539)
T ss_pred EEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCC--c---CCCCeEEEEEEecCCCeeEEEecCch---
Q ss_pred CCcCCceEEEEEecCCC
Q 037561 160 HCREGRMKFMVLPLLRR 176 (179)
Q Consensus 160 HC~~GqMKlaV~v~~~p 176 (179)
+...| |.-.|.|...+
T Consensus 109 ~~~~G-l~G~lIV~~~~ 124 (539)
T TIGR03389 109 WLRAT-VYGAIVILPKP 124 (539)
T ss_pred hhhcc-ceEEEEEcCCC
No 65
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=20.03 E-value=3.3e+02 Score=26.52 Aligned_cols=91 Identities=11% Similarity=0.091 Sum_probs=52.3
Q ss_pred CCCCCCCchhhcCCCCEEeCCEEEEEeCCC---CCCCCCcceEEeCCcccCCc-CCCCCccceeeecCCCCcceEEEecC
Q 037561 70 WHFGFNYSVWAFQNAPFYVNDVLVFKYDPP---NDTVFPHSVYQLPNLWSYLR-CDLSRAKMIANTTQGGGDGFEFVLKR 145 (179)
Q Consensus 70 W~~~~~Yt~WA~~~ktF~VGDtLvF~Y~~~---~~~~~~HsV~~V~~~~~Yd~-C~~s~~~~i~~~~~G~~~~f~v~L~~ 145 (179)
|.++..+..-. .+++.||.++....+. ..++.-|.+.+ ++. .|. ...+. .....|..-.|+|++..
T Consensus 67 ~~~Ng~~PGP~---ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~-~~~--~DGvP~vt~----~~I~PG~s~~Y~f~~~~ 136 (587)
T TIGR01480 67 ITVNGSIPGPL---LRWREGDTVRLRVTNTLPEDTSIHWHGILL-PFQ--MDGVPGVSF----AGIAPGETFTYRFPVRQ 136 (587)
T ss_pred EEECCccCCce---EEEECCCEEEEEEEcCCCCCceEEcCCCcC-Ccc--ccCCCcccc----cccCCCCeEEEEEECCC
Confidence 55544333333 4689999999988755 22234455543 121 111 11111 11234554567889999
Q ss_pred cccEEEEeCCCCCCCCcCCceEEEEEec
Q 037561 146 WLPYYFACGERGGFHCREGRMKFMVLPL 173 (179)
Q Consensus 146 ~G~~YFiCg~~~g~HC~~GqMKlaV~v~ 173 (179)
+|+|||=|-.. .+=+.| |.-.+.|.
T Consensus 137 ~GTyWYHsH~~--~q~~~G-L~G~lIV~ 161 (587)
T TIGR01480 137 SGTYWYHSHSG--FQEQAG-LYGPLIID 161 (587)
T ss_pred CeeEEEecCch--hHhhcc-ceEEEEEC
Confidence 99999999876 666678 66554444
Done!