Query 037561
Match_columns 179
No_of_seqs 168 out of 787
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 23:27:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037561.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037561hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ws8_A Mavicyanin; oxidized fo 100.0 2.9E-38 9.9E-43 239.4 7.3 104 58-176 1-106 (109)
2 1jer_A Cucumber stellacyanin; 100.0 6.4E-37 2.2E-41 240.9 7.0 104 58-175 2-109 (138)
3 2cbp_A Cucumber basic protein; 100.0 8.2E-36 2.8E-40 221.1 6.8 96 60-173 1-96 (96)
4 1x9u_A Umecyanin; cupredoxin, 100.0 1.4E-35 4.6E-40 227.1 7.4 101 60-175 2-106 (116)
5 1f56_A Plantacyanin; cupredoxi 100.0 9E-32 3.1E-36 197.8 7.4 91 60-173 1-91 (91)
6 1qhq_A Protein (auracyanin); e 99.1 2.9E-10 9.8E-15 86.6 7.6 108 56-173 13-139 (140)
7 2cal_A Rusticyanin; iron respi 99.0 4.9E-10 1.7E-14 88.1 7.6 83 84-173 63-154 (154)
8 1bxv_A Plastocyanin; copper pr 98.9 6.7E-09 2.3E-13 72.6 8.5 87 61-173 4-91 (91)
9 1pmy_A Pseudoazurin; electron 98.8 1.8E-08 6.1E-13 76.6 7.4 75 83-176 22-96 (123)
10 1paz_A Pseudoazurin precursor; 98.7 2E-08 6.9E-13 76.3 7.2 75 83-176 22-96 (123)
11 2aan_A Auracyanin A; cupredoxi 98.6 3.8E-07 1.3E-11 69.2 10.5 102 57-173 16-139 (139)
12 3erx_A Pseudoazurin; copper pr 98.5 2.9E-07 9.9E-12 70.1 7.7 75 83-176 22-96 (123)
13 3ef4_A Pseudoazurin, blue copp 98.5 2.9E-07 9.9E-12 70.5 7.7 84 65-174 10-95 (124)
14 3tu6_A Pseudoazurin (blue copp 98.5 2.9E-07 1E-11 70.5 7.7 75 83-176 24-98 (127)
15 1iuz_A Plastocyanin; electron 98.5 3.4E-07 1.2E-11 65.5 7.3 94 60-173 2-98 (98)
16 1kdj_A Plastocyanin; electron 98.5 1.4E-07 4.9E-12 67.4 5.0 92 61-173 2-102 (102)
17 1plc_A Plastocyanin; electron 98.5 3.3E-07 1.1E-11 65.3 6.7 92 61-173 2-99 (99)
18 2gim_A Plastocyanin; beta shee 98.4 1E-06 3.4E-11 63.3 8.5 89 61-173 5-105 (106)
19 2plt_A Plastocyanin; electron 98.4 5.9E-07 2E-11 63.6 6.6 93 60-173 2-98 (98)
20 1byp_A Protein (plastocyanin); 98.4 5.8E-07 2E-11 63.9 6.5 94 61-173 2-99 (99)
21 1b3i_A PETE protein, protein ( 98.3 1.6E-06 5.6E-11 61.3 7.0 90 61-173 4-97 (97)
22 1pcs_A Plastocyanin; electron 98.2 1.1E-05 3.9E-10 57.0 8.7 92 60-173 3-98 (98)
23 3cvb_A Plastocyanin; cupredoxi 97.7 0.00013 4.5E-09 51.7 6.9 92 61-173 4-104 (105)
24 2ux6_A Pseudoazurin; type-1 co 97.6 0.00012 4.2E-09 55.1 6.5 72 84-176 23-94 (122)
25 4hci_A Cupredoxin 1; structura 97.5 0.00012 4.2E-09 52.2 5.4 72 83-173 29-100 (100)
26 2ov0_A Amicyanin; beta-sandwic 97.3 0.00075 2.6E-08 48.7 7.0 86 58-172 17-104 (105)
27 1cuo_A Protein (azurin ISO-2); 97.2 0.0016 5.4E-08 49.6 8.6 100 60-173 3-128 (129)
28 1id2_A Amicyanin; beta barrel, 97.2 0.0018 6.3E-08 46.8 8.0 68 84-172 36-105 (106)
29 3ay2_A Lipid modified azurin p 97.1 0.0019 6.3E-08 51.6 7.9 98 60-173 43-166 (167)
30 3c75_A Amicyanin; copper prote 97.0 0.0029 9.8E-08 47.8 8.1 72 83-173 61-132 (132)
31 1iko_P Ephrin-B2; greek KEY, g 96.9 0.0006 2.1E-08 55.3 3.6 91 86-177 26-143 (178)
32 1nwp_A Azurin; electron transp 96.8 0.0059 2E-07 46.4 8.5 99 60-172 3-127 (128)
33 2ccw_A Azurin II, AZN-2; elect 96.7 0.0095 3.3E-07 45.2 8.9 31 139-173 95-128 (129)
34 2iaa_C Azurin; quinoprotein, t 96.6 0.012 4.3E-07 44.6 9.1 33 137-173 90-127 (128)
35 1shx_A Ephrin-A5; ephrin signa 95.9 0.025 8.6E-07 44.1 7.4 86 85-175 24-134 (138)
36 2x11_B Ephrin-A5; receptor-sig 95.7 0.028 9.5E-07 45.5 7.0 88 85-177 53-165 (177)
37 2cua_A Protein (CUA); CUA cent 95.5 0.053 1.8E-06 41.3 7.6 72 84-173 62-134 (135)
38 3s8f_B Cytochrome C oxidase su 95.5 0.14 4.6E-06 40.8 10.2 72 83-173 94-167 (168)
39 1iby_A Nitrosocyanin; RED copp 95.2 0.052 1.8E-06 38.9 6.3 72 84-173 40-111 (112)
40 2wo3_B Ephrin-A2; transferase- 95.2 0.094 3.2E-06 41.6 8.3 87 85-174 33-145 (157)
41 3czu_B Ephrin-A1; ATP-binding, 94.0 0.13 4.3E-06 41.8 6.6 86 85-175 51-161 (182)
42 3d12_B Ephrin-B3; beta propell 93.8 0.16 5.4E-06 39.6 6.6 88 85-173 23-140 (141)
43 3hei_B Ephrin-A1; EPH receptor 93.6 0.19 6.5E-06 38.8 6.8 39 85-124 23-67 (132)
44 2vsm_B Ephrin-B2; developmenta 93.0 0.2 6.9E-06 38.9 6.1 88 86-174 25-139 (140)
45 1fwx_A Nitrous oxide reductase 89.7 0.83 2.8E-05 42.8 7.5 76 84-174 515-592 (595)
46 2dv6_A Nitrite reductase; elec 89.4 0.51 1.8E-05 41.2 5.6 76 84-174 57-132 (447)
47 3sbq_A Nitrous-oxide reductase 83.5 2.7 9.3E-05 39.9 7.3 76 83-174 559-637 (638)
48 1mzy_A Copper-containing nitri 73.3 5.8 0.0002 33.3 5.8 83 84-173 66-151 (333)
49 1oe1_A Dissimilatory copper-co 71.6 7 0.00024 32.8 5.9 83 84-173 67-151 (336)
50 3fsa_A Azurin; copper, cupredo 67.3 7.4 0.00025 29.4 4.6 29 137-172 91-124 (125)
51 2bw4_A Copper-containing nitri 59.4 16 0.00056 30.5 5.8 82 84-172 73-156 (340)
52 3hb3_B Cytochrome C oxidase su 51.0 13 0.00045 31.8 3.9 72 84-174 191-264 (298)
53 1cyx_A CYOA; electron transpor 50.6 15 0.00052 29.9 4.0 71 84-173 43-115 (205)
54 2gsm_B Cytochrome C oxidase su 48.2 16 0.00055 30.5 3.9 72 84-174 173-246 (262)
55 1v54_B Cytochrome C oxidase po 47.1 14 0.00048 30.2 3.3 34 137-174 180-215 (227)
56 2zoo_A Probable nitrite reduct 45.3 11 0.00037 32.7 2.5 83 84-173 62-145 (442)
57 1kbv_A ANIA, major outer membr 44.1 22 0.00074 29.9 4.1 83 84-173 72-155 (327)
58 1mzy_A Copper-containing nitri 42.6 13 0.00046 31.0 2.6 34 139-175 285-319 (333)
59 1yel_A AT1G16640; CESG, protei 36.5 24 0.00081 24.8 2.7 16 84-99 76-91 (104)
60 1oe1_A Dissimilatory copper-co 36.4 19 0.00064 30.1 2.5 33 139-174 285-318 (336)
61 1jb0_M Photosystem 1 reaction 34.4 36 0.0012 19.9 2.8 25 1-25 1-27 (31)
62 1fft_B Ubiquinol oxidase; elec 33.8 25 0.00084 30.3 2.9 71 84-173 153-225 (315)
63 1zpu_A Iron transport multicop 33.7 1.1E+02 0.0036 27.6 7.2 82 84-173 36-123 (534)
64 1sdd_A Coagulation factor V; c 33.4 6.6 0.00023 32.8 -0.8 84 84-174 217-300 (306)
65 3iuw_A Activating signal coint 32.1 16 0.00055 25.8 1.2 16 84-99 36-52 (83)
66 3gdc_A Multicopper oxidase; be 32.0 17 0.00059 29.9 1.6 32 139-173 256-287 (288)
67 3gdc_A Multicopper oxidase; be 29.6 1.4E+02 0.0047 24.3 6.7 82 84-173 68-153 (288)
68 3g5w_A Multicopper oxidase typ 25.9 56 0.0019 27.3 3.7 65 85-153 37-104 (318)
69 1kbv_A ANIA, major outer membr 25.8 44 0.0015 27.9 3.0 34 139-175 274-308 (327)
70 3l6w_A Hemocyanin 1; cupredoxi 24.0 65 0.0022 29.6 4.0 78 85-173 414-491 (491)
71 1aoz_A Ascorbate oxidase; oxid 23.3 1.4E+02 0.0049 26.6 6.2 82 84-173 36-122 (552)
72 1sdd_B Coagulation factor V; c 22.2 44 0.0015 30.6 2.5 33 139-174 295-327 (647)
73 4he6_A Peptidase family U32; u 22.2 31 0.0011 23.6 1.1 17 82-99 27-43 (89)
74 2j5w_A Ceruloplasmin, ferroxid 20.9 82 0.0028 31.0 4.3 77 84-172 634-715 (1065)
75 4i1k_A B3 domain-containing tr 20.6 65 0.0022 24.3 2.8 16 84-99 115-130 (146)
76 1xne_A Hypothetical protein PF 20.2 32 0.0011 25.4 0.9 10 85-94 34-43 (113)
No 1
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=100.00 E-value=2.9e-38 Score=239.41 Aligned_cols=104 Identities=31% Similarity=0.495 Sum_probs=96.2
Q ss_pred CCcEEEEcCCCCCCCC--CCCchhhcCCCCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCC
Q 037561 58 GPSKIVVGGSDNWHFG--FNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGG 135 (179)
Q Consensus 58 ~A~~~~VGg~~GW~~~--~~Yt~WA~~~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~ 135 (179)
+|++|+|||+.||+++ .+|++||++ ++|+|||+|+|+|+++ .|+|+|| ++++|+.|+.++| +..+++|.
T Consensus 1 ~a~~~~VG~~~GW~~~~~~~Y~~Wa~~-~~F~vGD~LvF~y~~~-----~hsV~~V-~~~~y~~C~~~~p--~~~~~~G~ 71 (109)
T 1ws8_A 1 MATVHKVGDSTGWTTLVPYDYAKWASS-NKFHVGDSLLFNYNNK-----FHNVLQV-DQEQFKSCNSSSP--AASYTSGA 71 (109)
T ss_dssp CCCEEETTGGGCSCSSSCCCHHHHHHT-SCBCTTCEEEEECCTT-----TCCEEEE-CHHHHHHTCCSSC--SEEECSSE
T ss_pred CCcEEEeCCCCCccCCCCcChhHhhcC-CcCcCCCEEEEeecCC-----CceEEEE-ChHHCCcccCCCc--ccccCCCC
Confidence 4789999999999998 899999995 8999999999999998 7999999 9999999999988 88899987
Q ss_pred CcceEEEecCcccEEEEeCCCCCCCCcCCceEEEEEecCCC
Q 037561 136 GDGFEFVLKRWLPYYFACGERGGFHCREGRMKFMVLPLLRR 176 (179)
Q Consensus 136 ~~~f~v~L~~~G~~YFiCg~~~g~HC~~GqMKlaV~v~~~p 176 (179)
+ +|+|+++|++||||+++ +||++| |||+|+|++.+
T Consensus 72 ~---~v~L~~~G~~yFic~~~--gHC~~G-mKl~I~V~~~~ 106 (109)
T 1ws8_A 72 D---SIPLKRPGTFYFLCGIP--GHCQLG-QKVEIKVDPGS 106 (109)
T ss_dssp E---EEECCSSEEEEEECCST--TTTTTT-CEEEEEECC--
T ss_pred E---EEEECCCcCEEEECCCC--CcccCC-CEEEEEEcCCC
Confidence 6 89999999999999999 999999 99999998765
No 2
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=6.4e-37 Score=240.90 Aligned_cols=104 Identities=22% Similarity=0.394 Sum_probs=97.3
Q ss_pred CCcEEEEcCCCCCCCC---CCCchhhcCCCCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCC
Q 037561 58 GPSKIVVGGSDNWHFG---FNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQG 134 (179)
Q Consensus 58 ~A~~~~VGg~~GW~~~---~~Yt~WA~~~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G 134 (179)
+|++|+|||+.||+++ .+|++||++ ++|+|||+|+|+|+++ .|+|+||.++++|+.|+.+++ +..+++|
T Consensus 2 ~a~~~~VGg~~GW~~~~~~~~Y~~Wa~~-~~F~vGD~LvF~y~~~-----~HsV~~V~~~~~y~~C~~s~p--~~~~~~G 73 (138)
T 1jer_A 2 QSTVHIVGDNTGWSVPSSPNFYSQWAAG-KTFRVGDSLQFNFPAN-----AHNVHEMETKQSFDACNFVNS--DNDVERT 73 (138)
T ss_dssp CCCEEETTGGGCSSCCSSTTHHHHHHHT-CCEETTCEEEECCCTT-----TCCCEEESCHHHHHHTCCTTS--CCCCCCC
T ss_pred CceEEEECCcCcCcCCCCccchhhhhcC-CcCcCCCEEEEeecCC-----CceEEEeCchhhcCccCCCCc--cccccCC
Confidence 5789999999999999 789999995 8999999999999987 699999999999999999987 8888888
Q ss_pred CCcceEEEe-cCcccEEEEeCCCCCCCCcCCceEEEEEecCC
Q 037561 135 GGDGFEFVL-KRWLPYYFACGERGGFHCREGRMKFMVLPLLR 175 (179)
Q Consensus 135 ~~~~f~v~L-~~~G~~YFiCg~~~g~HC~~GqMKlaV~v~~~ 175 (179)
.+ +|+| +++|++||||+++ +||++| |||+|+|+..
T Consensus 74 ~~---~v~L~~~~G~~YFicg~~--gHC~~G-mKl~I~V~~~ 109 (138)
T 1jer_A 74 SP---VIERLDELGMHYFVCTVG--THCSNG-QKLSINVVAA 109 (138)
T ss_dssp SC---EEEECCSSEEEEEECCST--TTGGGT-CEEEEEEECC
T ss_pred Ce---EEEeccCCcCEEEEcCCC--CccccC-CEEEEEEcCC
Confidence 86 8999 9999999999998 999999 8999999764
No 3
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=8.2e-36 Score=221.15 Aligned_cols=96 Identities=33% Similarity=0.591 Sum_probs=89.2
Q ss_pred cEEEEcCCCCCCCCCCCchhhcCCCCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcce
Q 037561 60 SKIVVGGSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGF 139 (179)
Q Consensus 60 ~~~~VGg~~GW~~~~~Yt~WA~~~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f 139 (179)
++|+|||+.||++ +|++||++ ++|+|||+|+|+|+++ .|+|+|| ++++|+.|+.++| +..+++|.+
T Consensus 1 ~~~~VG~~~GW~~--~y~~Wa~~-~~f~vGD~L~F~y~~~-----~hsV~~v-~~~~y~~C~~~~~--~~~~~~G~~--- 66 (96)
T 2cbp_A 1 AVYVVGGSGGWTF--NTESWPKG-KRFRAGDILLFNYNPS-----MHNVVVV-NQGGFSTCNTPAG--AKVYTSGRD--- 66 (96)
T ss_dssp CEEETTGGGCSCS--SCTTTTTT-CCBCTTCEEEEECCTT-----TCCEEEE-CHHHHHHTCCCTT--CEEECSSEE---
T ss_pred CEEEECCcCCCcc--ChhhhccC-ceEcCCCEEEEEecCC-----CCEEEEE-CHHHCCccCCCCC--cccccCCCe---
Confidence 4699999999997 69999995 8999999999999998 6999999 8999999999987 888888876
Q ss_pred EEEecCcccEEEEeCCCCCCCCcCCceEEEEEec
Q 037561 140 EFVLKRWLPYYFACGERGGFHCREGRMKFMVLPL 173 (179)
Q Consensus 140 ~v~L~~~G~~YFiCg~~~g~HC~~GqMKlaV~v~ 173 (179)
+|+| ++|++||||+++ +||++| |||+|+|+
T Consensus 67 ~v~L-~~g~~yFic~~~--~HC~~G-mkl~I~Vl 96 (96)
T 2cbp_A 67 QIKL-PKGQSYFICNFP--GHCQSG-MKIAVNAL 96 (96)
T ss_dssp EEEC-CSEEEEEECCST--TTGGGT-CEEEEEEC
T ss_pred EEEe-cCCCEEEEcCCC--CccccC-CEEEEEEC
Confidence 8999 899999999999 999999 99999986
No 4
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=100.00 E-value=1.4e-35 Score=227.05 Aligned_cols=101 Identities=26% Similarity=0.401 Sum_probs=92.6
Q ss_pred cEEEEcCCCCCCCC---CCCchhhcCCCCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCC
Q 037561 60 SKIVVGGSDNWHFG---FNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGG 136 (179)
Q Consensus 60 ~~~~VGg~~GW~~~---~~Yt~WA~~~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~ 136 (179)
++|+|||+.||+++ .+|++||++ ++|+|||+|+|+|.++ .|+|+|| ++++|++|+.+++ +..+++|.+
T Consensus 2 ~~~~VG~~~GW~~~~~~~~Y~~Wa~~-~~f~vGD~L~F~y~~~-----~HsV~~V-~~~~y~~C~~~~~--~~~~~~G~~ 72 (116)
T 1x9u_A 2 EDYDVGGDMEWKRPSDPKFYITWATG-KTFRVGDELEFDFAAG-----MHDVAVV-TKDAFDNCKKENP--ISHMTTPPV 72 (116)
T ss_dssp CEEETTGGGCSSCCSSTTHHHHHHTT-CCEETTCEEEECCCTT-----TCCEEEE-CHHHHHTTCCSSC--SEEECSSSE
T ss_pred eEEEECCcCcCcCCCCCcchhhcccc-ccCcCCCEEEEEecCC-----CCeEEEE-ChhhcCccCCCCC--ccccCCCCe
Confidence 57999999999985 689999995 8999999999999998 6999999 9999999999987 888888875
Q ss_pred cceEEEecCcccEEEEeCCCCCCCCcCCceEEEE-EecCC
Q 037561 137 DGFEFVLKRWLPYYFACGERGGFHCREGRMKFMV-LPLLR 175 (179)
Q Consensus 137 ~~f~v~L~~~G~~YFiCg~~~g~HC~~GqMKlaV-~v~~~ 175 (179)
+|+|+++|++||||+++ +||++| |||+| +|++.
T Consensus 73 ---~v~l~~~G~~yFic~~~--~HC~~G-mkl~In~V~~~ 106 (116)
T 1x9u_A 73 ---KIMLNTTGPQYYICTVG--DHCRVG-QKLSINVVGAG 106 (116)
T ss_dssp ---EEECCSCEEEEEECCST--TTTTTT-CEEEEEEECC-
T ss_pred ---EEEECCCCCEEEECCCC--CccccC-CEEEEEEECCC
Confidence 89999999999999998 999999 99999 88654
No 5
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=99.97 E-value=9e-32 Score=197.80 Aligned_cols=91 Identities=30% Similarity=0.449 Sum_probs=83.4
Q ss_pred cEEEEcCCCCCCCCCCCchhhcCCCCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcce
Q 037561 60 SKIVVGGSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGF 139 (179)
Q Consensus 60 ~~~~VGg~~GW~~~~~Yt~WA~~~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f 139 (179)
++|+| ||+++ ++||++ ++|+|||+|+|+|.++ .|+|+|| ++++|+.|+.++| +..+++|.+
T Consensus 1 ~~y~V----gW~~~---~~Wa~~-~~f~vGD~L~F~y~~~-----~hsV~~v-~~~~y~~C~~~~~--~~~~~~G~~--- 61 (91)
T 1f56_A 1 AVYNI----GWSFN---VNGARG-KSFRAGDVLVFKYIKG-----QHNVVAV-NGRGYASCSAPRG--ARTYSSGQD--- 61 (91)
T ss_dssp CEEEE----ECSSS---CBSCTT-CCBCTTCEEEEECCBT-----TBCEEEE-CHHHHHTTCCCTT--CEEECSSEE---
T ss_pred CEEEE----eCCCC---CcCcCC-ccEeCCCEEEEEccCC-----CCeEEEE-CHHHcCCcCCCCC--cccccCCCc---
Confidence 46889 79998 899995 8999999999999998 6999999 8999999999987 888889876
Q ss_pred EEEecCcccEEEEeCCCCCCCCcCCceEEEEEec
Q 037561 140 EFVLKRWLPYYFACGERGGFHCREGRMKFMVLPL 173 (179)
Q Consensus 140 ~v~L~~~G~~YFiCg~~~g~HC~~GqMKlaV~v~ 173 (179)
+|+|+ +|++||||+++ +||++| |||+|+|.
T Consensus 62 ~v~L~-~g~~yFic~~~--~HC~~G-mkl~I~v~ 91 (91)
T 1f56_A 62 RIKLT-RGQNYFICSFP--GHCGGG-MKIAINAK 91 (91)
T ss_dssp EEECC-SEEEEEECCST--TTTTTT-CEEEEEEC
T ss_pred EEEeC-CCCeEEEcCCC--CccccC-CEEEEEEC
Confidence 89996 89999999998 999999 99999984
No 6
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=99.07 E-value=2.9e-10 Score=86.65 Aligned_cols=108 Identities=15% Similarity=0.121 Sum_probs=68.1
Q ss_pred CCCCcEEEEcCC-CCCCCCCCCchhhcCCCCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcC--------------
Q 037561 56 DDGPSKIVVGGS-DNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRC-------------- 120 (179)
Q Consensus 56 ~~~A~~~~VGg~-~GW~~~~~Yt~WA~~~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C-------------- 120 (179)
.+.++++.|+-. .+|.+.++ ..++++||++.|.+...+.+...|++++.....++..+
T Consensus 13 ~~~~~~v~V~~~~~~~~F~P~-------~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (140)
T 1qhq_A 13 ETPAQTVEVRAAPDALAFAQT-------SLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFV 85 (140)
T ss_dssp SCCSEEEEEEBCSSSSSBSCS-------EEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTC
T ss_pred cCCCEEEEEEEeCCCceEeCC-------eEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhccccccc
Confidence 345678888764 35877764 36899999999888751112247999887211122111
Q ss_pred CCCC-ccce---eeecCCCCcceEEEecCcccEEEEeCCCCCCCCcCCceEEEEEec
Q 037561 121 DLSR-AKMI---ANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCREGRMKFMVLPL 173 (179)
Q Consensus 121 ~~s~-~~~i---~~~~~G~~~~f~v~L~~~G~~YFiCg~~~g~HC~~GqMKlaV~v~ 173 (179)
...+ ...+ .....|.+..++|+++++|.|+|+|+.+ +||..| ||..|.|.
T Consensus 86 ~~~~~~~~~~~t~~l~pG~~~~~~~~~~~~G~y~f~C~~~--~H~~~G-M~g~i~V~ 139 (140)
T 1qhq_A 86 PPPDTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFP--GHYLAG-MKGTLTVT 139 (140)
T ss_dssp CCTTCTTEEEECCCBCTTEEEEEEEECCSSEEEEEECCST--TTTTTT-CEEEEEEE
T ss_pred CccccccccccceeeCCCceeEEEEEeCCCeeEEEEeCCc--CHhhcC-CEEEEEEc
Confidence 0000 0001 1122333233478888999999999999 999999 99999885
No 7
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=99.03 E-value=4.9e-10 Score=88.09 Aligned_cols=83 Identities=16% Similarity=0.109 Sum_probs=62.3
Q ss_pred CCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceee-------ecCCC--CcceEEEecCcccEEEEeC
Q 037561 84 APFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIAN-------TTQGG--GDGFEFVLKRWLPYYFACG 154 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~-------~~~G~--~~~f~v~L~~~G~~YFiCg 154 (179)
.++++||+|+|.+..... ...|++.++.....|..|..... +.. ...|. ...++|++ +||.|||+|+
T Consensus 63 i~V~~GD~V~~~~tN~~~-~~~H~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~i~PG~sgt~t~tft~-~pGtY~y~C~ 138 (154)
T 2cal_A 63 LEIPAGATVDVTFINTNK-GFGHSFDITKKGPPYAVMPVIDP--IVAGTGFSPVPKDGKFGYTDFTWHP-TAGTYYYVCQ 138 (154)
T ss_dssp EEECTTCEEEEEEEECCT-TCCCCCEEESCCSCCCSSCCCCS--EEEEBCCCCCCBTTBEEEEEEEECC-CSEEEEEECC
T ss_pred EEEeCCCEEEEEEEcCCC-CeeeEEEEeecCcchhccccccc--cccccccccccCCCCceEEEEEEEE-CCceEEEECC
Confidence 578999999999976421 23699999866678888876543 221 12333 33456788 9999999999
Q ss_pred CCCCCCCcCCceEEEEEec
Q 037561 155 ERGGFHCREGRMKFMVLPL 173 (179)
Q Consensus 155 ~~~g~HC~~GqMKlaV~v~ 173 (179)
.+ +||+.| ||..|.|.
T Consensus 139 ~~--gH~~~G-M~G~IiV~ 154 (154)
T 2cal_A 139 IP--GMAATG-MFGKIVVK 154 (154)
T ss_dssp ST--TTGGGT-CEEEEEEC
T ss_pred CC--CHHHCC-CEEEEEEC
Confidence 99 999999 99999873
No 8
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=98.90 E-value=6.7e-09 Score=72.60 Aligned_cols=87 Identities=17% Similarity=0.174 Sum_probs=59.8
Q ss_pred EEEEcCC-CCCCCCCCCchhhcCCCCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcce
Q 037561 61 KIVVGGS-DNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGF 139 (179)
Q Consensus 61 ~~~VGg~-~GW~~~~~Yt~WA~~~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f 139 (179)
++.+|+. .++.+.++ ..++++||+|.|.+.... .|+|... ....+. .. ......| +.+
T Consensus 4 ~v~~~~~~~~~~f~P~-------~i~v~~Gd~V~~~n~~~~----~H~v~~~-~~~~~~-----~~--~~~~~~g--~~~ 62 (91)
T 1bxv_A 4 AIKMGADNGMLAFEPS-------TIEIQAGDTVQWVNNKLA----PHNVVVE-GQPELS-----HK--DLAFSPG--ETF 62 (91)
T ss_dssp EEEESCTTSCSSEESS-------EEEECTTCEEEEEECSSC----CEEEEET-TCGGGC-----EE--EEECSTT--CEE
T ss_pred EEEEecCCCccEEeCC-------EEEECCCCEEEEEECCCC----CcEEEEe-CCCccC-----cc--cceeCCC--CEE
Confidence 4567754 45666553 368999999999987532 6999875 322221 00 1122334 346
Q ss_pred EEEecCcccEEEEeCCCCCCCCcCCceEEEEEec
Q 037561 140 EFVLKRWLPYYFACGERGGFHCREGRMKFMVLPL 173 (179)
Q Consensus 140 ~v~L~~~G~~YFiCg~~~g~HC~~GqMKlaV~v~ 173 (179)
++++++||+|+|+|. .||..| |+..|.|.
T Consensus 63 ~~~f~~~G~y~~~C~----~H~~~g-M~g~i~V~ 91 (91)
T 1bxv_A 63 EATFSEPGTYTYYCE----PHRGAG-MVGKIVVQ 91 (91)
T ss_dssp EEECCSCEEEEEECT----TTGGGT-CEEEEEEC
T ss_pred EEEeCCCEEEEEEeC----CCccCC-CEEEEEEC
Confidence 888999999999999 499999 99999873
No 9
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=98.76 E-value=1.8e-08 Score=76.59 Aligned_cols=75 Identities=19% Similarity=0.122 Sum_probs=55.8
Q ss_pred CCCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCCCCCCc
Q 037561 83 NAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCR 162 (179)
Q Consensus 83 ~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~g~HC~ 162 (179)
..++++||++.|..... .|+|+.. +.|...... .+..+.++.|+++++++|.|.|+|. .||.
T Consensus 22 ~i~V~~GdtV~f~n~~~-----~H~v~~~------~~~~p~~~~---~~~~~pG~t~~~tF~~~G~y~y~C~----~H~~ 83 (123)
T 1pmy_A 22 LVRLKPGDSIKFLPTDK-----GHNVETI------KGMAPDGAD---YVKTTVGQEAVVKFDKEGVYGFKCA----PHYM 83 (123)
T ss_dssp EEEECTTCEEEEECSSS-----SCCCEEC------TTSSCTTCC---CCBCCTTSCEEEECCSCEEEEEECS----TTTT
T ss_pred EEEECCCCEEEEEECCC-----CcEEEEe------cccCCCCcc---ceecCCCCEEEEEeCCCeEEEEEeC----Cccc
Confidence 35789999999998875 6999864 123332211 1223344568999999999999998 4999
Q ss_pred CCceEEEEEecCCC
Q 037561 163 EGRMKFMVLPLLRR 176 (179)
Q Consensus 163 ~GqMKlaV~v~~~p 176 (179)
.| |+-.|.|...|
T Consensus 84 ~g-M~G~I~V~~~~ 96 (123)
T 1pmy_A 84 MG-MVALVVVGDKR 96 (123)
T ss_dssp TT-CEEEEEESSCC
T ss_pred cC-CEEEEEEcCCC
Confidence 99 99999998655
No 10
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=98.74 E-value=2e-08 Score=76.30 Aligned_cols=75 Identities=13% Similarity=0.055 Sum_probs=55.8
Q ss_pred CCCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCCCCCCc
Q 037561 83 NAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCR 162 (179)
Q Consensus 83 ~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~g~HC~ 162 (179)
..++++||++.|..... .|+|+.. +.|...... .+.++.++.|+++++++|.|.|+|. .||.
T Consensus 22 ~i~V~~GdtV~f~~~~~-----~H~v~~~------~~~~p~~~~---~~~~~pG~t~~~tF~~~G~y~y~C~----~H~~ 83 (123)
T 1paz_A 22 YIKANPGDTVTFIPVDK-----GHNVESI------KDMIPEGAE---KFKSKINENYVLTVTQPGAYLVKCT----PHYA 83 (123)
T ss_dssp EEEECTTCEEEEEESSS-----SCCCEEC------TTCSCTTCC---CCBCCTTCCEEEECCSCEEEEEECT----TTGG
T ss_pred EEEECCCCEEEEEECCC-----CeEEEEe------cccCCCCcc---ceecCCCCEEEEEeCCCEEEEEEeC----Cccc
Confidence 36799999999999876 5999864 133332221 1233444568999999999999998 4999
Q ss_pred CCceEEEEEecCCC
Q 037561 163 EGRMKFMVLPLLRR 176 (179)
Q Consensus 163 ~GqMKlaV~v~~~p 176 (179)
.| |+-.|.|...|
T Consensus 84 ~g-M~G~I~V~~~~ 96 (123)
T 1paz_A 84 MG-MIALIAVGDSP 96 (123)
T ss_dssp GT-CEEEEEESSSC
T ss_pred CC-CEEEEEEcCCC
Confidence 99 99999998754
No 11
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=98.60 E-value=3.8e-07 Score=69.23 Aligned_cols=102 Identities=17% Similarity=0.205 Sum_probs=64.7
Q ss_pred CCCcEEEEcC-CCCCCCCCCCchhhcCCCCEEeCCEEEEEeCCCCCCCC-CcceEEeCCc-----------------ccC
Q 037561 57 DGPSKIVVGG-SDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVF-PHSVYQLPNL-----------------WSY 117 (179)
Q Consensus 57 ~~A~~~~VGg-~~GW~~~~~Yt~WA~~~ktF~VGDtLvF~Y~~~~~~~~-~HsV~~V~~~-----------------~~Y 117 (179)
+...++.||- ..++.+.++ ..++++||++.|.+.... .. .|++...... .+|
T Consensus 16 ~~~~~V~v~~~~~~~~F~p~-------~i~v~~G~~V~~~~~N~~--~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~~ 86 (139)
T 2aan_A 16 SGPVTIEIGSKGEELAFDKT-------ELTVSAGQTVTIRFKNNS--AVQQHNWILVKGGEAEAANIANAGLSAGPAANY 86 (139)
T ss_dssp -CCEEEEEEBCTTSSSBSCS-------EEEECTTCEEEEEEECCC--SSCCBCCEEESSCHHHHHHHHHHHHHHCGGGTT
T ss_pred CcCEEEEEEecCCccEEcCC-------eEEECCCCEEEEEEEeCC--CCCCeeEEEeccccccchhhhhhhhcccccccc
Confidence 3445677753 235666553 367899999998887542 23 5999887321 145
Q ss_pred CcCCCCCcccee---eecCCCCcceEEEecCcccEEEEeCCCCCCCCcCCceEEEEEec
Q 037561 118 LRCDLSRAKMIA---NTTQGGGDGFEFVLKRWLPYYFACGERGGFHCREGRMKFMVLPL 173 (179)
Q Consensus 118 d~C~~s~~~~i~---~~~~G~~~~f~v~L~~~G~~YFiCg~~~g~HC~~GqMKlaV~v~ 173 (179)
..|...+. +. ....|....++|++++||.|.|+|..+ +||. | |+-.|.|.
T Consensus 87 ~p~~~~~~--~~~t~~l~pGet~~v~f~~~~pG~y~f~C~~~--~H~~-G-M~G~i~V~ 139 (139)
T 2aan_A 87 LPADKSNI--IAESPLANGNETVEVTFTAPAAGTYLYICTVP--GHYP-L-MQGKLVVN 139 (139)
T ss_dssp CCSCCTTE--EEECCCBCTTCEEEEEEECCSSEEEEEECCST--TTTT-T-SEEEEEEC
T ss_pred cCcccccc--cccccccCCCCEEEEEEECCCCeEEEEEcCCC--ChHH-c-CEEEEEEC
Confidence 56653321 11 123343323345555899999999999 9999 9 99888873
No 12
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=98.51 E-value=2.9e-07 Score=70.11 Aligned_cols=75 Identities=15% Similarity=0.045 Sum_probs=56.3
Q ss_pred CCCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCCCCCCc
Q 037561 83 NAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCR 162 (179)
Q Consensus 83 ~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~g~HC~ 162 (179)
..++++||++.|..... .|+|... + .|-..+ ...+..+.++.|++++++||.|.|+|. .||.
T Consensus 22 ~i~V~~GdtV~f~~~~~-----~H~v~~~-~-----~~~P~g---~~~f~~~pg~t~s~TF~~pG~y~y~C~----~H~~ 83 (123)
T 3erx_A 22 FVRAEPGDVINFVPTDK-----SHNVEAI-K-----EILPEG---VESFKSKINESYTLTVTEPGLYGVKCT----PHFG 83 (123)
T ss_dssp EEEECTTEEEEEEESST-----TCCCEEC-T-----TSSCTT---CCCCBCCTTCCEEEEECSCEEEEEECG----GGTT
T ss_pred EEEECCCCEEEEEECCC-----CceEEEc-C-----CcCCCC---ccceecCCCCEEEEEeCCCeEEEEEeC----CCCc
Confidence 36899999999999875 6999864 1 122222 112333444678999999999999999 4999
Q ss_pred CCceEEEEEecCCC
Q 037561 163 EGRMKFMVLPLLRR 176 (179)
Q Consensus 163 ~GqMKlaV~v~~~p 176 (179)
.| |+-.|.|...|
T Consensus 84 ~G-M~G~I~V~~~~ 96 (123)
T 3erx_A 84 MG-MVGLVQVGDAP 96 (123)
T ss_dssp TT-CEEEEEESSSC
T ss_pred CC-cEEEEEECCCC
Confidence 99 99999998755
No 13
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=98.51 E-value=2.9e-07 Score=70.46 Aligned_cols=84 Identities=15% Similarity=0.081 Sum_probs=60.3
Q ss_pred cCCCC--CCCCCCCchhhcCCCCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEE
Q 037561 65 GGSDN--WHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFV 142 (179)
Q Consensus 65 Gg~~G--W~~~~~Yt~WA~~~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~ 142 (179)
+|+.| ..+.++ ..+.++||++.|..... .|+|... + .+-..+. ..+....++.|+++
T Consensus 10 ~g~~G~~~~F~P~-------~i~V~~GDTV~f~n~~~-----~Hnv~~~-~-----~~~p~g~---~~~~~~pg~t~s~T 68 (124)
T 3ef4_A 10 KDDAGNTMVFQPG-------FVKVEAGDTVKFVPTDK-----SHNAESV-R-----EVWPEGV---APVKGGFSKEVVFN 68 (124)
T ss_dssp ECTTSCEEEEESS-------EEEECTTCEEEEECSSS-----SCCCEEC-T-----TTSCTTS---CCCBCCTTCCEEEE
T ss_pred cCCCCceeEEeCC-------EEEECCCCEEEEEECCC-----CccEEEe-C-----CcCCCCc---cccccCCCCEEEEE
Confidence 44444 676664 46899999999998874 7999864 1 1322221 11222334568999
Q ss_pred ecCcccEEEEeCCCCCCCCcCCceEEEEEecC
Q 037561 143 LKRWLPYYFACGERGGFHCREGRMKFMVLPLL 174 (179)
Q Consensus 143 L~~~G~~YFiCg~~~g~HC~~GqMKlaV~v~~ 174 (179)
++++|.|.|+|. .||..| |+-.|.|..
T Consensus 69 F~~~G~y~Y~C~----~H~~~G-M~G~I~V~~ 95 (124)
T 3ef4_A 69 AEKEGLYVLKCA----PHYGMG-MVVLVQVGK 95 (124)
T ss_dssp CCSSEEEEEECT----TTGGGT-CEEEEEESS
T ss_pred eCCCeEEEEEcC----CCCcCC-CEEEEEECC
Confidence 999999999997 599999 999999875
No 14
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=98.51 E-value=2.9e-07 Score=70.50 Aligned_cols=75 Identities=13% Similarity=0.047 Sum_probs=55.8
Q ss_pred CCCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCCCCCCc
Q 037561 83 NAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCR 162 (179)
Q Consensus 83 ~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~g~HC~ 162 (179)
..++++||++.|..... .|+|... + .+.+... ..+..+.++.|++++++||.|+|+|. .||.
T Consensus 24 ~i~V~~GDtVtf~n~~~-----~H~v~~~-~-----~~~P~g~---~~f~s~pGet~s~TF~~pG~y~y~C~----~H~~ 85 (127)
T 3tu6_A 24 VIRAQPGDTVTFVAKDK-----GHNSALM-K-----GGAPEGA---ETWKGKINEEITVTLSKPGVYMYQCA----PHVG 85 (127)
T ss_dssp EEEECTTCEEEEECSSS-----SCCCEEC-T-----TCSCTTC---CCCBCCTTCCCEEECCSCEEEEEECT----TTGG
T ss_pred EEEECCCCEEEEEECCC-----CceEEEc-c-----CcCCCCc---cceecCCCCEEEEEeCCCeEEEEEeC----CCCc
Confidence 36899999999999875 6999864 1 1222221 11223344567999999999999999 4999
Q ss_pred CCceEEEEEecCCC
Q 037561 163 EGRMKFMVLPLLRR 176 (179)
Q Consensus 163 ~GqMKlaV~v~~~p 176 (179)
.| |+-.|.|...|
T Consensus 86 ~G-M~G~I~V~~~~ 98 (127)
T 3tu6_A 86 MG-MIGAIVVGEPA 98 (127)
T ss_dssp GT-CEEEEEESSCT
T ss_pred CC-cEEEEEECcCC
Confidence 99 99999998766
No 15
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=98.49 E-value=3.4e-07 Score=65.50 Aligned_cols=94 Identities=17% Similarity=0.164 Sum_probs=60.0
Q ss_pred cEEEEcCC-CCCCCCCCCchhhcCCCCEEeCCEEEEEeCCCCCCCCCcceEEeCC--cccCCcCCCCCccceeeecCCCC
Q 037561 60 SKIVVGGS-DNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPN--LWSYLRCDLSRAKMIANTTQGGG 136 (179)
Q Consensus 60 ~~~~VGg~-~GW~~~~~Yt~WA~~~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~--~~~Yd~C~~s~~~~i~~~~~G~~ 136 (179)
.++.+|++ .+..+.++ ..++++||++.|..... ..|+|..... ...++.+..+.. ......|
T Consensus 2 ~~V~m~~~~~~~~F~P~-------~i~v~~GdtV~~~n~~~----~~H~v~~~~~~~p~g~~~~~~~~~--~~~~~~g-- 66 (98)
T 1iuz_A 2 QIVKLGGDDGSLAFVPS-------KISVAAGEAIEFVNNAG----FPHNIVFDEDAVPAGVDADAISYD--DYLNSKG-- 66 (98)
T ss_dssp EEEEESCTTSCCSEESS-------EEEECTTCEEEEEECSS----CCEEEEECTTSSCTTCCHHHHCEE--EEECSTT--
T ss_pred EEEEEecCCCCcEEeCC-------EEEECCCCEEEEEECCC----CCEEEEEeCCCCcccccccccccc--ccccCCC--
Confidence 45566653 34555553 36789999999987654 3799987521 011222211110 0112333
Q ss_pred cceEEEecCcccEEEEeCCCCCCCCcCCceEEEEEec
Q 037561 137 DGFEFVLKRWLPYYFACGERGGFHCREGRMKFMVLPL 173 (179)
Q Consensus 137 ~~f~v~L~~~G~~YFiCg~~~g~HC~~GqMKlaV~v~ 173 (179)
+.++++++++|.|.|+|. -||+.| |+-.|.|.
T Consensus 67 ~~~~~tf~~~G~y~y~C~----~H~~~g-M~G~I~V~ 98 (98)
T 1iuz_A 67 ETVVRKLSTPGVYGVYCE----PHAGAG-MKMTITVQ 98 (98)
T ss_dssp CEEEEECCSCEEEEEECT----TTGGGT-CEEEEEEC
T ss_pred CEEEEEcCCCEEEEEEch----hhccCC-CEEEEEEC
Confidence 456889999999999998 399999 99999873
No 16
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=98.48 E-value=1.4e-07 Score=67.45 Aligned_cols=92 Identities=15% Similarity=0.082 Sum_probs=58.7
Q ss_pred EEEEcCC-CCCCCCCCCchhhcCCCCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCC----cCCCCCccce--e--ee
Q 037561 61 KIVVGGS-DNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYL----RCDLSRAKMI--A--NT 131 (179)
Q Consensus 61 ~~~VGg~-~GW~~~~~Yt~WA~~~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd----~C~~s~~~~i--~--~~ 131 (179)
++.||.+ .+..+.++ ..++++||++.|..... ..|+|... +...++ .|..... + . ..
T Consensus 2 ~V~~g~~~~~~~F~P~-------~i~v~~G~tV~~~n~~~----~~H~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~ 67 (102)
T 1kdj_A 2 KVEVGDEVGNFKFYPD-------SITVSAGEAVEFTLVGE----TGHNIVFD-IPAGAPGTVASELKAAS--MDENDLLS 67 (102)
T ss_dssp EEEESCTTCCCCEESS-------EEEECTTCCEEEEECSS----SCBCCEEC-CCTTCCHHHHHHHHHTS--CCTTCCBB
T ss_pred EEEEecCCCccEEeCC-------EEEECCCCEEEEEECCC----CCeEEEEe-Ccccccccccchhhccc--ccccceec
Confidence 4567763 34554443 35789999999996653 26999875 322221 1111100 1 0 11
Q ss_pred cCCCCcceEEEecCcccEEEEeCCCCCCCCcCCceEEEEEec
Q 037561 132 TQGGGDGFEFVLKRWLPYYFACGERGGFHCREGRMKFMVLPL 173 (179)
Q Consensus 132 ~~G~~~~f~v~L~~~G~~YFiCg~~~g~HC~~GqMKlaV~v~ 173 (179)
..| +.+++++++||.|.|+|. .||+.| |+-.|.|.
T Consensus 68 ~pG--~~~~~tf~~~G~y~y~C~----~H~~~g-M~G~i~V~ 102 (102)
T 1kdj_A 68 EDE--PSFKAKVSTPGTYTFYCT----PHKSAN-MKGTLTVK 102 (102)
T ss_dssp TTB--CEEEECCCSCEEEEEECS----TTGGGT-CEEEEEEC
T ss_pred CCC--CEEEEEeCCCeEEEEEeC----CCcccC-CeEEEEEC
Confidence 223 456888999999999999 499999 99998873
No 17
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=98.47 E-value=3.3e-07 Score=65.29 Aligned_cols=92 Identities=23% Similarity=0.305 Sum_probs=58.4
Q ss_pred EEEEcCCC-CCCCCCCCchhhcCCCCEEeCCEEEEEeCCCCCCCCCcceEEeCCcc---cCCcCCCC--CccceeeecCC
Q 037561 61 KIVVGGSD-NWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLW---SYLRCDLS--RAKMIANTTQG 134 (179)
Q Consensus 61 ~~~VGg~~-GW~~~~~Yt~WA~~~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~---~Yd~C~~s--~~~~i~~~~~G 134 (179)
++.+|++. +..+.++ ..++++||+|.|..... ..|+|... +.. ..+.+... ... + ....|
T Consensus 2 ~v~m~~~~~~~~F~P~-------~i~v~~G~tV~~~n~~~----~~H~v~~~-~~~~p~~~~~~~~~~~~~~-~-~~~~G 67 (99)
T 1plc_A 2 DVLLGADDGSLAFVPS-------EFSISPGEKIVFKNNAG----FPHNIVFD-EDSIPSGVDASKISMSEED-L-LNAKG 67 (99)
T ss_dssp EEEESCTTCCSCEESS-------EEEECTTCEEEEEECSS----CCBCCEEC-TTSSCTTCCHHHHCCCTTC-C-BCSTT
T ss_pred EEEEecCCCcceEeCC-------EEEECCCCEEEEEECCC----CceEEEEe-CCCCcccccccccccccCc-c-ccCCC
Confidence 45676543 4554443 36799999999987764 26999875 211 11111100 000 0 11233
Q ss_pred CCcceEEEecCcccEEEEeCCCCCCCCcCCceEEEEEec
Q 037561 135 GGDGFEFVLKRWLPYYFACGERGGFHCREGRMKFMVLPL 173 (179)
Q Consensus 135 ~~~~f~v~L~~~G~~YFiCg~~~g~HC~~GqMKlaV~v~ 173 (179)
+.+++++++||.|.|+|. .||+.| |+..|.|.
T Consensus 68 --~~~~~tf~~~G~y~~~C~----~H~~~g-M~G~i~V~ 99 (99)
T 1plc_A 68 --ETFEVALSNKGEYSFYCS----PHQGAG-MVGKVTVN 99 (99)
T ss_dssp --CEEEEECCSCEEEEEECG----GGTTTT-CEEEEEEC
T ss_pred --CEEEEEECCCceEEEEcC----CCcccC-CEEEEEEC
Confidence 456899999999999999 499999 99999873
No 18
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=98.43 E-value=1e-06 Score=63.27 Aligned_cols=89 Identities=17% Similarity=0.119 Sum_probs=58.4
Q ss_pred EEEEcCC-CCCCCCCCCchhhcCCCCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCC-Cc-------cceeee
Q 037561 61 KIVVGGS-DNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLS-RA-------KMIANT 131 (179)
Q Consensus 61 ~~~VGg~-~GW~~~~~Yt~WA~~~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s-~~-------~~i~~~ 131 (179)
++.||.+ .++.+.++ ..++++||++.|..... ..|+|... + .|... +. ......
T Consensus 5 ~V~~~~~~~~~~F~P~-------~i~v~~Gd~V~~~n~~~----~~H~~~~~-~-----~~~~~~~g~~~~~~~~~~~~~ 67 (106)
T 2gim_A 5 TVKLGSDKGLLVFEPA-------KLTIKPGDTVEFLNNKV----PPHNVVFD-A-----ALNPAKSADLAKSLSHKQLLM 67 (106)
T ss_dssp EEEESCTTCCSSEESS-------EEEECTTCEEEEEECSS----SCCCBEEC-S-----SSSTTCCHHHHHHHCBCSCCC
T ss_pred EEEEEecCCcceEcCC-------EEEECCCCEEEEEECCC----CCceEEEe-C-----CCCcccccccchhccccceee
Confidence 5667653 45666553 36789999999996653 26999864 2 12211 00 000012
Q ss_pred cCCCCcceEEEe---cCcccEEEEeCCCCCCCCcCCceEEEEEec
Q 037561 132 TQGGGDGFEFVL---KRWLPYYFACGERGGFHCREGRMKFMVLPL 173 (179)
Q Consensus 132 ~~G~~~~f~v~L---~~~G~~YFiCg~~~g~HC~~GqMKlaV~v~ 173 (179)
..| +.+++++ ++||.|+|.|. .||+.| |+..|.|.
T Consensus 68 ~pG--~~~~~~f~~~~~~G~y~y~C~----~H~~~G-M~G~i~V~ 105 (106)
T 2gim_A 68 SPG--QSTSTTFPADAPAGEYTFYCE----PHRGAG-MVGKITVA 105 (106)
T ss_dssp STT--CEEEEECCTTCCSEEEEEECT----TTGGGT-CEEEEEEC
T ss_pred CCC--CEEEEEEecCCCCceEEEEeC----ChhhcC-cEEEEEEc
Confidence 233 4568888 89999999999 499999 99999885
No 19
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=98.40 E-value=5.9e-07 Score=63.63 Aligned_cols=93 Identities=16% Similarity=0.178 Sum_probs=59.3
Q ss_pred cEEEEcCC-CCCCCCCCCchhhcCCCCEEeCCEEEEEeCCCCCCCCCcceEEeCCc---ccCCcCCCCCccceeeecCCC
Q 037561 60 SKIVVGGS-DNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNL---WSYLRCDLSRAKMIANTTQGG 135 (179)
Q Consensus 60 ~~~~VGg~-~GW~~~~~Yt~WA~~~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~---~~Yd~C~~s~~~~i~~~~~G~ 135 (179)
.++.+|++ .++.+.++ ..++++||++.|..... ..|+|... +. ..++.+..... -.....|
T Consensus 2 ~~V~m~~~~~~~~F~P~-------~i~v~~G~~V~~~n~~~----~~H~~~~~-~~~~p~~~~~~~~~~~--~~~~~pG- 66 (98)
T 2plt_A 2 ATVKLGADSGALEFVPK-------TLTIKSGETVNFVNNAG----FPHNIVFD-EDAIPSGVNADAISRD--DYLNAPG- 66 (98)
T ss_dssp EEEEESCTTCCSSEESS-------EEEECTTCEEEEEECSS----CCEEEEEC-GGGSCTTCCHHHHCEE--EEECSTT-
T ss_pred EEEEEecCCCCceEeCC-------EEEECCCCEEEEEECCC----CceEEEEe-CCCCCCcccccccccc--ceecCCC-
Confidence 45667644 34555443 35789999999987764 26999864 21 11111111000 0112233
Q ss_pred CcceEEEecCcccEEEEeCCCCCCCCcCCceEEEEEec
Q 037561 136 GDGFEFVLKRWLPYYFACGERGGFHCREGRMKFMVLPL 173 (179)
Q Consensus 136 ~~~f~v~L~~~G~~YFiCg~~~g~HC~~GqMKlaV~v~ 173 (179)
+.++++++++|+|.|.|. .||+.| |+-.|.|.
T Consensus 67 -~~~~~tf~~~G~y~y~C~----~H~~~g-M~G~i~V~ 98 (98)
T 2plt_A 67 -ETYSVKLTAAGEYGYYCE----PHQGAG-MVGKIIVQ 98 (98)
T ss_dssp -CEEEEECCSCEEEEEECG----GGGGGT-CEEEEEEC
T ss_pred -CEEEEEeCCCeEEEEEcC----CccccC-CeEEEEEC
Confidence 456889999999999999 499999 99998873
No 20
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=98.40 E-value=5.8e-07 Score=63.91 Aligned_cols=94 Identities=19% Similarity=0.217 Sum_probs=58.3
Q ss_pred EEEEcCC-CCCCCCCCCchhhcCCCCEEeCCEEEEEeCCCCCCCCCcceEEeCCc---ccCCcCCCCCccceeeecCCCC
Q 037561 61 KIVVGGS-DNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNL---WSYLRCDLSRAKMIANTTQGGG 136 (179)
Q Consensus 61 ~~~VGg~-~GW~~~~~Yt~WA~~~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~---~~Yd~C~~s~~~~i~~~~~G~~ 136 (179)
++.||++ .+..+.++ ..++++||++.|+.... ..|+|... +. ..++.+...-...-.....|
T Consensus 2 ~V~~~~~~~~~~F~P~-------~i~v~~G~tV~~~n~~~----~~H~~~~~-~~~~p~g~~~~~~~~~~~~~~~~~G-- 67 (99)
T 1byp_A 2 EVLLGSSDGGLAFVPS-------DLSIASGEKITFKNNAG----FPHNDLFD-KKEVPAGVDVTKISMPEEDLLNAPG-- 67 (99)
T ss_dssp EEEESCTTSCCSEESS-------EEEECTTEEEEEEECSS----CCBCCEEC-TTSSCTTCCHHHHSCCTTCCBCSTT--
T ss_pred EEEEecCCCcceEeCC-------EEEECCCCEEEEEECCC----CcceEEEe-CCCCccccccccccccccceeeCCC--
Confidence 4567643 34555443 35789999999987764 26998875 21 11222211000000011233
Q ss_pred cceEEEecCcccEEEEeCCCCCCCCcCCceEEEEEec
Q 037561 137 DGFEFVLKRWLPYYFACGERGGFHCREGRMKFMVLPL 173 (179)
Q Consensus 137 ~~f~v~L~~~G~~YFiCg~~~g~HC~~GqMKlaV~v~ 173 (179)
+.++++++++|.|.|+|. .||+.| |+-.|.|.
T Consensus 68 ~~~~~~f~~~G~y~~~C~----~H~~~g-M~G~i~V~ 99 (99)
T 1byp_A 68 EEYSVTLTEKGTYKFYCA----PHAGAG-MVGKVTVN 99 (99)
T ss_dssp CEEEEEECSCEEEEEECG----GGTTTT-CEEEEEEC
T ss_pred CEEEEEeCCCcEEEEEcC----CccccC-CEEEEEEC
Confidence 456889999999999999 499999 99998873
No 21
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=98.31 E-value=1.6e-06 Score=61.32 Aligned_cols=90 Identities=17% Similarity=0.112 Sum_probs=57.4
Q ss_pred EEEEcCC-CCCCCCCCCchhhcCCCCEEeCCEEEEEeCCCCCCCCCcceEEeCCccc---CCcCCCCCccceeeecCCCC
Q 037561 61 KIVVGGS-DNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWS---YLRCDLSRAKMIANTTQGGG 136 (179)
Q Consensus 61 ~~~VGg~-~GW~~~~~Yt~WA~~~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~---Yd~C~~s~~~~i~~~~~G~~ 136 (179)
++.+|++ .+..+.++ ..++++||++.|..... ..|+|... +... ...+.... .....|
T Consensus 4 ~V~~~~~~~~~~F~P~-------~i~v~~G~~V~~~n~~~----~~H~~~~~-~~~~~~~~~~~~~~~----~~~~~g-- 65 (97)
T 1b3i_A 4 QIKMGTDKYAPLYEPK-------ALSISAGDTVEFVMNKV----GPHNVIFD-KVPAGESAPALSNTK----LAIAPG-- 65 (97)
T ss_dssp EEEEEETTTEEEEESS-------EEEECTTCEEEEEECSS----CCCCBEEE-ECCTTSCHHHHCBCC----CCCSCS--
T ss_pred EEEEeccCCccEEeCC-------EEEECCCCEEEEEECCC----CCeEEEEe-CCCCccccccccccc----eecCCC--
Confidence 4566643 44555443 35789999999997653 26999875 2111 00010111 111233
Q ss_pred cceEEEecCcccEEEEeCCCCCCCCcCCceEEEEEec
Q 037561 137 DGFEFVLKRWLPYYFACGERGGFHCREGRMKFMVLPL 173 (179)
Q Consensus 137 ~~f~v~L~~~G~~YFiCg~~~g~HC~~GqMKlaV~v~ 173 (179)
+.+++++++||.|.|+|. .||+.| |+-.|.|.
T Consensus 66 ~~~~~tf~~~G~y~y~C~----~H~~~g-M~G~i~V~ 97 (97)
T 1b3i_A 66 SFYSVTLGTPGTYSFYCT----PHRGAG-MVGTITVE 97 (97)
T ss_dssp CCEEEECCSCSEEEEECS----STTTTT-CEEEEEEC
T ss_pred CEEEEEeCCCeEEEEEcc----ChhhcC-CEEEEEEC
Confidence 346889999999999999 599999 99998873
No 22
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=98.16 E-value=1.1e-05 Score=57.01 Aligned_cols=92 Identities=15% Similarity=0.139 Sum_probs=57.9
Q ss_pred cEEEEcCC-CCCCCCCCCchhhcCCCCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCC---cCCCCCccceeeecCCC
Q 037561 60 SKIVVGGS-DNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYL---RCDLSRAKMIANTTQGG 135 (179)
Q Consensus 60 ~~~~VGg~-~GW~~~~~Yt~WA~~~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd---~C~~s~~~~i~~~~~G~ 135 (179)
.++.+|.+ .+..+.++ ..++++||++.|..... ..|+|... +. ... ....... -.....|
T Consensus 3 ~~V~~~~~~~~~~F~P~-------~i~v~~G~~V~~~n~~~----~~H~~~~~-~~-~~pg~~~~~~~~~--~~~~~pG- 66 (98)
T 1pcs_A 3 ATVKMGSDSGALVFEPS-------TVTIKAGEEVKWVNNKL----SPHNIVFD-AD-GVPADTAAKLSHK--GLLFAAG- 66 (98)
T ss_dssp EEEEESCTTSCSSEESS-------EEEECTTCEEEEEECSS----CCEEEEEC-CS-SSCHHHHHHHCEE--EEECSTT-
T ss_pred EEEEEecCCCccEEeCC-------EEEECCCCEEEEEECCC----CCcEEEEe-CC-CCCcccccccccc--ccccCCC-
Confidence 35567653 45555443 35789999999996653 26998874 21 100 0000000 0112233
Q ss_pred CcceEEEecCcccEEEEeCCCCCCCCcCCceEEEEEec
Q 037561 136 GDGFEFVLKRWLPYYFACGERGGFHCREGRMKFMVLPL 173 (179)
Q Consensus 136 ~~~f~v~L~~~G~~YFiCg~~~g~HC~~GqMKlaV~v~ 173 (179)
+.+++++++||+|.|.|. .||..| |+-.|.|.
T Consensus 67 -~~~~~tf~~~G~y~~~C~----~H~~~g-M~G~i~V~ 98 (98)
T 1pcs_A 67 -ESFTSTFTEPGTYTYYCE----PHRGAG-MVGKVVVE 98 (98)
T ss_dssp -CEEEEECCSCEEEEEECG----GGTTTT-CEEEEEEC
T ss_pred -CEEEEEcCCCeEEEEEcC----CccccC-CeEEEEEC
Confidence 456888999999999999 499999 99998873
No 23
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=97.65 E-value=0.00013 Score=51.67 Aligned_cols=92 Identities=14% Similarity=0.139 Sum_probs=56.0
Q ss_pred EEEEcCC-CCCCCCCCCchhhcCCCCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCC---Cccce--eeecCC
Q 037561 61 KIVVGGS-DNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLS---RAKMI--ANTTQG 134 (179)
Q Consensus 61 ~~~VGg~-~GW~~~~~Yt~WA~~~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s---~~~~i--~~~~~G 134 (179)
++.||.+ .+..+.+. ..++++||++.|..... ..|+|..- . ..+ .+... ..... .....|
T Consensus 4 ~V~~~~~~~~~~f~p~-------~i~v~~Gd~V~~~N~~~----~~H~v~~~-~-~~~-~~~~g~~~~~~~~~~~~i~pG 69 (105)
T 3cvb_A 4 TVKMGADSGLFQFEPA-------NVTVHPGDTVKWVNNKL----PPHNILFD-D-KQV-PGASKELADKLSHSQLMFSPG 69 (105)
T ss_dssp EEEESCTTCCSCEESS-------EEEECTTEEEEEEECSS----CCEEEEEC-T-TSS-GGGCHHHHHHHCEEEEECSTT
T ss_pred EEEEeecCCccEEeCC-------EEEEcCCCEEEEEECCC----CCCeEEEe-C-CCC-CcccccccccccccccccCCC
Confidence 4567653 45555443 35788999999985543 26998864 1 111 12100 00001 112233
Q ss_pred CCcceEEEe---cCcccEEEEeCCCCCCCCcCCceEEEEEec
Q 037561 135 GGDGFEFVL---KRWLPYYFACGERGGFHCREGRMKFMVLPL 173 (179)
Q Consensus 135 ~~~~f~v~L---~~~G~~YFiCg~~~g~HC~~GqMKlaV~v~ 173 (179)
+.+++++ +++|+++|.|. .|+..| |+-.|.|.
T Consensus 70 --~~~~~~f~~~~~~G~y~y~C~----~H~~~G-M~G~i~V~ 104 (105)
T 3cvb_A 70 --ESYEITFSSDFPAGTYTYYCA----PHRGAG-MVGKITVE 104 (105)
T ss_dssp --CEEEEEECTTSCSEEEEEECT----TTGGGT-CEEEEEEC
T ss_pred --CeEEEEEecCCCCeeEEEEeC----CchhcC-CEEEEEEc
Confidence 4457777 78999999999 499999 99888874
No 24
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=97.61 E-value=0.00012 Score=55.08 Aligned_cols=72 Identities=14% Similarity=0.002 Sum_probs=51.1
Q ss_pred CCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCCCCCCcC
Q 037561 84 APFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCRE 163 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~g~HC~~ 163 (179)
.++++||++.|..... .|+|... . .+-.... ..+..+.++.++++++++|.|.|+|.. |+.
T Consensus 23 i~V~~GdtV~f~n~d~-----~H~v~~~-~-----~~~p~~~---~~~~~~~g~t~~~tF~~~G~y~y~C~~----H~~- 83 (122)
T 2ux6_A 23 LKVAPGDTVTFIPTDK-----GHNVETI-K-----GMIPDGA---EAFKSKINENYKVTFTAPGVYGVKCTP----HPF- 83 (122)
T ss_dssp EEECTTEEEEEEESSS-----SCCCEEC-T-----TCSCTTC---CCCBCCTTCCEEEEECSCEEEEEEETT----EEE-
T ss_pred EEECCCCEEEEEECCC-----CcEEEEc-c-----cccCCCc---ceeecCCCCEEEEEeCCCEEEEEEeCC----Ccc-
Confidence 5789999999998765 6999875 2 1222221 112233345678999999999999985 665
Q ss_pred CceEEEEEecCCC
Q 037561 164 GRMKFMVLPLLRR 176 (179)
Q Consensus 164 GqMKlaV~v~~~p 176 (179)
|+-.|.|...|
T Consensus 84 --M~G~I~V~~~p 94 (122)
T 2ux6_A 84 --MVGVVQVGDAP 94 (122)
T ss_dssp --EEEEEEESSSC
T ss_pred --CEEEEEEeCCC
Confidence 89999988766
No 25
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=97.54 E-value=0.00012 Score=52.24 Aligned_cols=72 Identities=14% Similarity=0.087 Sum_probs=48.1
Q ss_pred CCCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCCCCCCc
Q 037561 83 NAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCR 162 (179)
Q Consensus 83 ~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~g~HC~ 162 (179)
..++++||++.|.+...+ ...|++..- ++. . -.....|....++++.++||.|.|.|. .||.
T Consensus 29 ~i~v~~G~tV~~~~~n~d--~~~H~~~~~----~~~------~--~~~~~pg~~~~~~~t~~~~G~Y~y~C~----~H~~ 90 (100)
T 4hci_A 29 VITIPINESTTLLLKNKG--KSEHTFTIK----KLG------I--DVVVESGKEKNITVKPKSAGTYELICR----YHLL 90 (100)
T ss_dssp EEEECTTSCEEEEEEECS--SSCEEEEEG----GGT------E--EEEECTTCEEEEEECCCSCEEEEEECT----TTGG
T ss_pred EEEECCCCEEEEEEEcCC--CceEEEEEe----cCC------c--ceeecCCcceeEEEecccCceEEEECc----cccC
Confidence 368999999999875431 125887642 111 0 012234443445677789999999996 5999
Q ss_pred CCceEEEEEec
Q 037561 163 EGRMKFMVLPL 173 (179)
Q Consensus 163 ~GqMKlaV~v~ 173 (179)
.| |+-.|.|.
T Consensus 91 ~g-M~G~i~Ve 100 (100)
T 4hci_A 91 KG-MEGKVIVK 100 (100)
T ss_dssp GT-CEEEEEEC
T ss_pred CC-CEEEEEEC
Confidence 99 99888873
No 26
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=97.28 E-value=0.00075 Score=48.66 Aligned_cols=86 Identities=15% Similarity=0.173 Sum_probs=53.2
Q ss_pred CCcEEEEcCCCCCCCCCCCchhhcCCCCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceee--ecCCC
Q 037561 58 GPSKIVVGGSDNWHFGFNYSVWAFQNAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIAN--TTQGG 135 (179)
Q Consensus 58 ~A~~~~VGg~~GW~~~~~Yt~WA~~~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~--~~~G~ 135 (179)
.+.++.|-- .+|.+.+. ..++++||++.|..... ..|+|... +.. + +...+.. ...|
T Consensus 17 ~a~~~~V~~-~~~~F~P~-------~i~v~~Gd~V~~~N~d~----~~H~v~~~-~~~-----~--g~~~~~~~~~~pG- 75 (105)
T 2ov0_A 17 ADGAIVVDI-AKMKYETP-------ELHVKVGDTVTWINREA----MPHNVHFV-AGV-----L--GEAALKGPMMKKE- 75 (105)
T ss_dssp CTTCEEEEE-ETTEESSS-------EEEECTTCEEEEEECSS----SCBCCEEC-TTT-----S--SSSCEECCCBCTT-
T ss_pred CCcCEEEEE-eecEEcCC-------EEEECCCCEEEEEECCC----CCEEEEEc-CCC-----C--CcccccccccCCC-
Confidence 344555432 34565543 36789999999985543 36998864 211 0 0000111 1223
Q ss_pred CcceEEEecCcccEEEEeCCCCCCCCcCCceEEEEEe
Q 037561 136 GDGFEFVLKRWLPYYFACGERGGFHCREGRMKFMVLP 172 (179)
Q Consensus 136 ~~~f~v~L~~~G~~YFiCg~~~g~HC~~GqMKlaV~v 172 (179)
+.|+++++++|.|.|.|.. |- | |+-.|.|
T Consensus 76 -~~~~~tf~~~G~y~y~C~~----H~--g-M~G~i~V 104 (105)
T 2ov0_A 76 -QAYSLTFTEAGTYDYHCTP----HP--F-MRGKVVV 104 (105)
T ss_dssp -EEEEEEECSCEEEEEECSS----CT--T-CEEEEEE
T ss_pred -CEEEEEeCCCEEEEEEeCC----CC--C-CEEEEEE
Confidence 4578889999999999996 43 8 8988877
No 27
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=97.22 E-value=0.0016 Score=49.63 Aligned_cols=100 Identities=10% Similarity=0.113 Sum_probs=57.5
Q ss_pred cEEEEcCCCCCCCCCCCchhhcCCCCEEeC-CEEEEEeCCCCCC---CCCcceEEeCCccc----------------CCc
Q 037561 60 SKIVVGGSDNWHFGFNYSVWAFQNAPFYVN-DVLVFKYDPPNDT---VFPHSVYQLPNLWS----------------YLR 119 (179)
Q Consensus 60 ~~~~VGg~~GW~~~~~Yt~WA~~~ktF~VG-DtLvF~Y~~~~~~---~~~HsV~~V~~~~~----------------Yd~ 119 (179)
-++.|+......+.++ ..+++.| |.+.|.+.....- ...|+++.. +..+ |..
T Consensus 3 ~~v~i~~~d~m~F~p~-------~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~-~~~~~~~~~~~~m~~~~~~~~v~ 74 (129)
T 1cuo_A 3 CETTVTSGDTMTYSTR-------SISVPASCAEFTVNFEHKGHMPKTGMGHNWVLA-KSADVGDVAKEGAHAGADNNFVT 74 (129)
T ss_dssp CEEEEEECSSSCCSCS-------EEEEETTCSEEEEEEEECSSSCHHHHCBCCEEE-EGGGHHHHHHHHHTTCGGGTTSC
T ss_pred EEEEEEeCCCceEccC-------eEEEcCCCeEEEEEEEECCCCcccccccceEEe-cCcchhhhHHHhhhccccccccc
Confidence 3566666566666654 3678999 9666655432100 013999876 3332 211
Q ss_pred CCCCCccce---eeecCCCCcceEEEec---CcccEEEEeCCCCCCCCcCCceEEEEEec
Q 037561 120 CDLSRAKMI---ANTTQGGGDGFEFVLK---RWLPYYFACGERGGFHCREGRMKFMVLPL 173 (179)
Q Consensus 120 C~~s~~~~i---~~~~~G~~~~f~v~L~---~~G~~YFiCg~~~g~HC~~GqMKlaV~v~ 173 (179)
=+ .+..+ .....|.+..++|+++ +||.|.|+|+.+ +|=+ | ||-.|.|.
T Consensus 75 ~~--~~~~~~~t~~l~pGet~svtf~~~~~~~~G~Y~f~C~~p--gH~~-~-M~G~i~V~ 128 (129)
T 1cuo_A 75 PG--DKRVIAFTPIIGGGEKTSVKFKVSALSKDEAYTYFCSYP--GHFS-M-MRGTLKLE 128 (129)
T ss_dssp TT--CTTCSEECCCBCTTCEEEEEEEGGGCCTTSCEEEECCST--TCTT-T-SEEEEEEE
T ss_pred cc--cccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCC--CchH-c-CEEEEEEe
Confidence 00 11101 1123443333455544 899999999999 8888 8 98888774
No 28
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=97.17 E-value=0.0018 Score=46.83 Aligned_cols=68 Identities=15% Similarity=0.151 Sum_probs=45.6
Q ss_pred CCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCcccee--eecCCCCcceEEEecCcccEEEEeCCCCCCCC
Q 037561 84 APFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIA--NTTQGGGDGFEFVLKRWLPYYFACGERGGFHC 161 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~--~~~~G~~~~f~v~L~~~G~~YFiCg~~~g~HC 161 (179)
.++++||++.|..... ..|+|... +... .... .. ....| +.++++++++|.|.|.|.. |.
T Consensus 36 i~V~~G~tV~~~N~d~----~~H~v~~~-~~~~-----~~~~--~~s~~l~~g--~~~~~tf~~~G~y~~~C~~----H~ 97 (106)
T 1id2_A 36 VTIKAGETVYWVNGEV----MPHNVAFK-KGIV-----GEDA--FRGEMMTKD--QAYAITFNEAGSYDYFCTP----HP 97 (106)
T ss_dssp EEECTTCEEEEEECSS----SCBCCEEC-TTTS-----SSSC--EECCCBCTT--EEEEEEECSCEEEEEECSS----CT
T ss_pred EEECCCCEEEEEECCC----CcEEEEEe-CCCC-----Cccc--ccccccCCC--CEEEEEeCCCEEEEEEeCC----CC
Confidence 5789999999985543 36998764 2110 0000 11 11223 4568889999999999985 66
Q ss_pred cCCceEEEEEe
Q 037561 162 REGRMKFMVLP 172 (179)
Q Consensus 162 ~~GqMKlaV~v 172 (179)
| |+-.|.|
T Consensus 98 --~-M~G~I~V 105 (106)
T 1id2_A 98 --F-MRGKVIV 105 (106)
T ss_dssp --T-CEEEEEE
T ss_pred --C-CEEEEEE
Confidence 8 9998887
No 29
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=97.07 E-value=0.0019 Score=51.62 Aligned_cols=98 Identities=18% Similarity=0.179 Sum_probs=56.2
Q ss_pred cEEEEcCCCCCCCCCCCchhhcCCCCE-EeCCEEEEEeCCCCCC---CCCcceEEeCCccc---------------CCcC
Q 037561 60 SKIVVGGSDNWHFGFNYSVWAFQNAPF-YVNDVLVFKYDPPNDT---VFPHSVYQLPNLWS---------------YLRC 120 (179)
Q Consensus 60 ~~~~VGg~~GW~~~~~Yt~WA~~~ktF-~VGDtLvF~Y~~~~~~---~~~HsV~~V~~~~~---------------Yd~C 120 (179)
.++.|+...+..+.++ ..++ +.||++.|.+...... ...|+++.. +..+ |..=
T Consensus 43 ~~V~I~~~d~m~F~P~-------~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~-~~~~~~~v~~~~m~~~~~~~v~~ 114 (167)
T 3ay2_A 43 CAATVESNDNMQFNTK-------DIQVSKACKEFTITLKHTGTQPKASMGHNLVIA-KAEDMDGVFKDGVGAADTDYVKP 114 (167)
T ss_dssp CEEEEEECTTSCBSCS-------EEEEETTCSSEEEEEEECSCSCHHHHCBCCEEE-EGGGHHHHHHHHGGGGGGTTSCT
T ss_pred eEEEEEeCCCceEecc-------eEEEecCCCEEEEEEEECCCCccccccceEEec-cCcchhhhHHHhhhccccccccc
Confidence 5677876666666653 3455 6699765555432110 013999876 3332 1110
Q ss_pred CCCCcccee---eecCCCCcceEEEec----CcccEEEEeCCCCCCCCcCCceEEEEEec
Q 037561 121 DLSRAKMIA---NTTQGGGDGFEFVLK----RWLPYYFACGERGGFHCREGRMKFMVLPL 173 (179)
Q Consensus 121 ~~s~~~~i~---~~~~G~~~~f~v~L~----~~G~~YFiCg~~~g~HC~~GqMKlaV~v~ 173 (179)
+ .+..+. ....| +.++|+++ ++|.|.|+|..+ +|=+ | ||-.|.|.
T Consensus 115 ~--d~~vl~~t~~l~pG--et~svtf~~~~lkpG~Y~f~Ct~P--gH~~-g-M~G~i~V~ 166 (167)
T 3ay2_A 115 D--DARVVAHTKLIGGG--EESSLTLDPAKLADGDYKFACTFP--GHGA-L-MNGKVTLV 166 (167)
T ss_dssp T--CTTEEEECCCBCTT--CEEEEEECGGGGTTSCEEEECCST--TGGG-T-SEEEEEEE
T ss_pred c--ccchhccceeeCCC--CEEEEEEecCCCCCcEEEEEcCCC--Cchh-c-CEEEEEEe
Confidence 1 111111 12233 33355554 799999999999 8888 8 99888874
No 30
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.01 E-value=0.0029 Score=47.82 Aligned_cols=72 Identities=13% Similarity=0.112 Sum_probs=46.5
Q ss_pred CCCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCCCCCCc
Q 037561 83 NAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCR 162 (179)
Q Consensus 83 ~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~g~HC~ 162 (179)
..++++||++.|..... ..|+|... +... .... .....-..++.++++++++|.|.|.|.. |.
T Consensus 61 ~i~V~~GdtV~~~N~d~----~~H~v~~~-~~~~-----g~~~--~~s~~l~pG~t~~~tF~~~G~y~y~C~~----H~- 123 (132)
T 3c75_A 61 EVTIKAGETVYWVNGEV----MPHNVAFK-KGIV-----GEDA--FRGEMMTKDQAYAITFNEAGSYDYFCTP----HP- 123 (132)
T ss_dssp EEEECTTCEEEEEECSS----SCBCCEEC-TTTS-----SSSC--EECCCBCTTEEEEEEECSCEEEEEECSS----CT-
T ss_pred EEEECCCCEEEEEECCC----CceEEEEe-CCCC-----Cccc--ccccccCCCCEEEEEcCCCEEEEEEeCC----Cc-
Confidence 36789999999985543 36999864 2110 0000 1110011234568889999999999985 55
Q ss_pred CCceEEEEEec
Q 037561 163 EGRMKFMVLPL 173 (179)
Q Consensus 163 ~GqMKlaV~v~ 173 (179)
| |+-.|.|.
T Consensus 124 -g-M~G~I~V~ 132 (132)
T 3c75_A 124 -F-MRGKVIVE 132 (132)
T ss_dssp -T-CEEEEEEC
T ss_pred -C-CEEEEEEC
Confidence 8 99988873
No 31
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5
Probab=96.90 E-value=0.0006 Score=55.34 Aligned_cols=91 Identities=16% Similarity=0.161 Sum_probs=56.3
Q ss_pred EEeCCEEEEE---eCCCC-CCCCCcceEEeCCcccCCcCCCCC-ccceeeecCCCC-cceEEEec-----------Ccc-
Q 037561 86 FYVNDVLVFK---YDPPN-DTVFPHSVYQLPNLWSYLRCDLSR-AKMIANTTQGGG-DGFEFVLK-----------RWL- 147 (179)
Q Consensus 86 F~VGDtLvF~---Y~~~~-~~~~~HsV~~V~~~~~Yd~C~~s~-~~~i~~~~~G~~-~~f~v~L~-----------~~G- 147 (179)
.++||.|-+- |..+. .....+.|++| ++.+|+.|+... +..+..-..... .-|++.+. ++|
T Consensus 26 v~igD~LdIiCP~~~~~~~~~~E~~~LY~V-s~~~y~~C~~~~~~~~l~~C~~P~~~~kftikFq~fsP~p~GlEF~pg~ 104 (178)
T 1iko_P 26 PQIGDKLDIICPKVDSKTVGQYEYYKVYMV-DKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNK 104 (178)
T ss_dssp CCTTCEEEEECCCCCSSSCSCCCBEEEEEE-CHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTTE
T ss_pred ecCCCEEEEECCCCCCCCCCCceEEEEEEE-CHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCC
Confidence 4569999886 33221 01235899999 999999999873 333333322221 22333322 255
Q ss_pred cEEEEeCCC---------CCCCCcCCceEEEEEecCCCC
Q 037561 148 PYYFACGER---------GGFHCREGRMKFMVLPLLRRW 177 (179)
Q Consensus 148 ~~YFiCg~~---------~g~HC~~GqMKlaV~v~~~p~ 177 (179)
.|||||.-. .|+.|..=+|||.|.|...|-
T Consensus 105 ~YY~IstS~G~~~gl~~~~gG~C~t~~Mkl~ikV~~~~~ 143 (178)
T 1iko_P 105 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDAS 143 (178)
T ss_dssp EEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETCC--
T ss_pred ceEEEecCCcccccccccCCCccccceeEEEEEeecCCC
Confidence 799999864 147899844999999987763
No 32
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=96.82 E-value=0.0059 Score=46.40 Aligned_cols=99 Identities=18% Similarity=0.145 Sum_probs=54.4
Q ss_pred cEEEEcCCCCCCCCCCCchhhcCCCCE-EeCCEEEEEeCCCCCCCC-----CcceEEeCCcccCCc-----C--------
Q 037561 60 SKIVVGGSDNWHFGFNYSVWAFQNAPF-YVNDVLVFKYDPPNDTVF-----PHSVYQLPNLWSYLR-----C-------- 120 (179)
Q Consensus 60 ~~~~VGg~~GW~~~~~Yt~WA~~~ktF-~VGDtLvF~Y~~~~~~~~-----~HsV~~V~~~~~Yd~-----C-------- 120 (179)
-++.|+.+.+..+.++ ..++ +.||++.|.+.... .. .|+++.. +..+.+. =
T Consensus 3 ~~v~v~~~d~m~F~p~-------~i~V~k~G~~vtv~~~N~g--~~p~~~m~H~~vi~-~~~~~~~~~~~~m~~~~~~~~ 72 (128)
T 1nwp_A 3 CKVTVDSTDQMSFNTK-------DIAIDKSCKTFTVELTHSG--SLPKNVMGHNLVIS-KEADMQPIATDGLSAGIDKQY 72 (128)
T ss_dssp CEEEEEECTTSCBSCS-------EEEECTTCSEEEEEEEECS--SCCHHHHCBCCEEE-EGGGHHHHHHHHTTTCGGGTT
T ss_pred EEEEEEeCCCccEecC-------EEEEecCCCEEEEEEEECC--CCcccCCCceEEEc-cccchhhHHHHHhhccccccc
Confidence 4566776666666653 2455 66997666664331 12 2999875 3322110 0
Q ss_pred -CCCCcccee---eecCCCCcceEEEec--Cccc-EEEEeCCCCCCCCcCCceEEEEEe
Q 037561 121 -DLSRAKMIA---NTTQGGGDGFEFVLK--RWLP-YYFACGERGGFHCREGRMKFMVLP 172 (179)
Q Consensus 121 -~~s~~~~i~---~~~~G~~~~f~v~L~--~~G~-~YFiCg~~~g~HC~~GqMKlaV~v 172 (179)
....+..++ ....|.+..++|+.+ ++|. |.|+|+.+ +|=+ | ||-.|.|
T Consensus 73 ~~~~~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~P--gH~~-g-M~G~i~V 127 (128)
T 1nwp_A 73 LKDGDARVIAHTKVIGAGEKDSVTFDVSKLAAGEKYGFFCSFP--GHIS-M-MKGTVTL 127 (128)
T ss_dssp SCTTCTTEEEECCCBCTTCEEEEEEEGGGSCTTSCEEEECCST--TCGG-G-SEEEEEE
T ss_pred cccccchhheeeeeeCCCCEEEEEEeccccCCCceEEEEECCC--ChhH-C-CEEEEEE
Confidence 000111121 123343222334443 5676 99999999 8888 8 9988877
No 33
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=96.71 E-value=0.0095 Score=45.24 Aligned_cols=31 Identities=19% Similarity=0.032 Sum_probs=23.6
Q ss_pred eEEEec--Cccc-EEEEeCCCCCCCCcCCceEEEEEec
Q 037561 139 FEFVLK--RWLP-YYFACGERGGFHCREGRMKFMVLPL 173 (179)
Q Consensus 139 f~v~L~--~~G~-~YFiCg~~~g~HC~~GqMKlaV~v~ 173 (179)
++|+.+ ++|. |.|+|..+ +|=+ | ||-.|.|.
T Consensus 95 vtf~~~~l~~G~~Y~f~C~~p--gH~~-g-M~G~i~V~ 128 (129)
T 2ccw_A 95 VTFDVSKIAAGENYAYFCSFP--GHWA-M-MKGTLKLG 128 (129)
T ss_dssp EEEEGGGSCTTCCEEEECCST--TGGG-T-SEEEEEEC
T ss_pred EEEeccccCCCceEEEEeCCC--ChhH-c-CEEEEEEe
Confidence 344444 5665 99999999 8888 8 99888874
No 34
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=96.64 E-value=0.012 Score=44.59 Aligned_cols=33 Identities=18% Similarity=0.012 Sum_probs=25.2
Q ss_pred cceEEEec----Ccc-cEEEEeCCCCCCCCcCCceEEEEEec
Q 037561 137 DGFEFVLK----RWL-PYYFACGERGGFHCREGRMKFMVLPL 173 (179)
Q Consensus 137 ~~f~v~L~----~~G-~~YFiCg~~~g~HC~~GqMKlaV~v~ 173 (179)
+.++++++ ++| .|-|+|+.+ +|=+ | ||-.|.|.
T Consensus 90 es~~vtf~~~~l~~G~~Y~f~C~~P--gH~~-g-M~G~i~V~ 127 (128)
T 2iaa_C 90 ETDSVTFDVSKLKEGEDYAFFCSFP--GHWS-I-MKGTIELG 127 (128)
T ss_dssp CEEEEEEESSCCCTTCCEEEECCST--TCTT-T-SEEEEEEC
T ss_pred CEEEEEEeccccCCCceEEEEECCC--ChhH-C-CEEEEEEe
Confidence 33445544 678 499999999 8988 9 99888874
No 35
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*
Probab=95.92 E-value=0.025 Score=44.06 Aligned_cols=86 Identities=17% Similarity=0.167 Sum_probs=49.6
Q ss_pred CEEeCCEEEEEeCCCCC-----CCCCcceEEeCCcccCCcCCCCCc-cceeeecC----CCCcceEEEecC---------
Q 037561 85 PFYVNDVLVFKYDPPND-----TVFPHSVYQLPNLWSYLRCDLSRA-KMIANTTQ----GGGDGFEFVLKR--------- 145 (179)
Q Consensus 85 tF~VGDtLvF~Y~~~~~-----~~~~HsV~~V~~~~~Yd~C~~s~~-~~i~~~~~----G~~~~f~v~L~~--------- 145 (179)
..++||.|-+-=+..+. ......+++| ++.+|++|+.... ..+..=.. .....|++++.+
T Consensus 24 ~V~i~D~lDIiCP~~~~~~~~~~~E~~~lY~V-s~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFq~fsP~p~G~E 102 (138)
T 1shx_A 24 DVCINDYLDVFCPHYEDSVPEDKTERYVLYMV-NFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE 102 (138)
T ss_dssp EECTTCEEEEECCCCCTTCCSTTCCCEEEEEE-CHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCCC
T ss_pred EecCCCEEEEECCCCCCCCCCCCceEEEEEEE-CHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEEcCCCCCcee
Confidence 47789999775332211 1236788899 9999999997643 22211111 112345554433
Q ss_pred --cc-cEEEEeCCCC---CCCCcCCceEEEEEecCC
Q 037561 146 --WL-PYYFACGERG---GFHCREGRMKFMVLPLLR 175 (179)
Q Consensus 146 --~G-~~YFiCg~~~---g~HC~~GqMKlaV~v~~~ 175 (179)
|| .||||+.-.. |+-| |||.|.|..+
T Consensus 103 F~pG~~YY~ISts~~~~~g~~C----lrL~V~V~p~ 134 (138)
T 1shx_A 103 FRPGREYFYISSAIPDNGRRSC----LKLKVFVRPT 134 (138)
T ss_dssp CCTTEEEEEEEEESSCCSCSCC----CEEEEEECCT
T ss_pred ecCCCeEEEEEcCCCCCCCCce----eEEEEEEEcc
Confidence 55 5888875441 2334 7888887653
No 36
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}
Probab=95.69 E-value=0.028 Score=45.54 Aligned_cols=88 Identities=17% Similarity=0.160 Sum_probs=49.9
Q ss_pred CEEeCCEEEEEeCCCCC-----CCCCcceEEeCCcccCCcCCCCCcc-ceeeecC----CCCcceEEEecC---------
Q 037561 85 PFYVNDVLVFKYDPPND-----TVFPHSVYQLPNLWSYLRCDLSRAK-MIANTTQ----GGGDGFEFVLKR--------- 145 (179)
Q Consensus 85 tF~VGDtLvF~Y~~~~~-----~~~~HsV~~V~~~~~Yd~C~~s~~~-~i~~~~~----G~~~~f~v~L~~--------- 145 (179)
..++||.|-+-=+..+. ......+++| ++++|++|+..... .+..=.. .....|++++.+
T Consensus 53 ~V~i~D~LDIiCP~y~~~~~~~~~E~y~LY~V-s~e~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~FSP~p~G~E 131 (177)
T 2x11_B 53 DVCINDYLDVFCPHYEDSVPEDKTERYVLYMV-NFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE 131 (177)
T ss_dssp EECTTCEEEEECCCCCSSSCSSSCCCEEEEEE-CHHHHHHTCCTTTEEEEEEECCTTCSSSSCEEEEECCSSCSSTTCCC
T ss_pred EecCCCEEEEECCCCCCCCCCCCceEEEEEEE-CHHHhccccCCCCCcEEEEeCCCCCCCCCeEEEEEEEEcCCCCCCcc
Confidence 47789999775332211 1246788999 99999999986432 1211111 112345444433
Q ss_pred --cc-cEEEEeCCCC---CCCCcCCceEEEEEecCCCC
Q 037561 146 --WL-PYYFACGERG---GFHCREGRMKFMVLPLLRRW 177 (179)
Q Consensus 146 --~G-~~YFiCg~~~---g~HC~~GqMKlaV~v~~~p~ 177 (179)
|| .||||+.-.. ++-| |||.|.|..+..
T Consensus 132 F~pG~~YYyISTS~~~~~g~~C----lrLkV~V~p~~~ 165 (177)
T 2x11_B 132 FRPGREYFYISSAIPDNGRRSC----LKLKVFVRPTNS 165 (177)
T ss_dssp CCTTEEEEEEEEESSCCCSSSC----CEEEEEECCTTT
T ss_pred ccCCCeEEEEecCCCCCCCCcc----eEEEEEEEcCCC
Confidence 55 5888875431 2234 677777765543
No 37
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=95.47 E-value=0.053 Score=41.30 Aligned_cols=72 Identities=18% Similarity=0.222 Sum_probs=47.5
Q ss_pred CCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCC-CCCCCc
Q 037561 84 APFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGER-GGFHCR 162 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~-~g~HC~ 162 (179)
.++.+||.+.|...+.+ +.|+... ++. .. + + ....|....+.++++++|.|+|.|.+- +.+|
T Consensus 62 l~Vp~G~~V~~~vts~D---V~Hsf~i-p~~-~~--------k-~-d~~PG~~~~~~~~~~~~G~y~~~C~e~CG~~H-- 124 (135)
T 2cua_A 62 IEVPQGAEIVFKITSPD---VIHGFHV-EGT-NI--------N-V-EVLPGEVSTVRYTFKRPGEYRIICNQYCGLGH-- 124 (135)
T ss_dssp EEEETTSEEEEEEEBSS---SCEEEEE-TTS-SC--------E-E-EECBTBCEEEEEECCSCEEEEEECCSCCSTTS--
T ss_pred EEEcCCCEEEEEEEeCC---ccceEEe-cCC-Cc--------e-e-EeCCCCcEEEEEEcCCCEEEEEECcccCCCCc--
Confidence 67899999999987642 3688764 221 11 0 1 112343344688999999999999862 0034
Q ss_pred CCceEEEEEec
Q 037561 163 EGRMKFMVLPL 173 (179)
Q Consensus 163 ~GqMKlaV~v~ 173 (179)
.+ |+..|.|.
T Consensus 125 ~~-M~g~v~V~ 134 (135)
T 2cua_A 125 QN-MFGTIVVK 134 (135)
T ss_dssp TT-CEEEEEEE
T ss_pred CC-CEEEEEEE
Confidence 56 99988875
No 38
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=95.45 E-value=0.14 Score=40.80 Aligned_cols=72 Identities=18% Similarity=0.244 Sum_probs=48.6
Q ss_pred CCCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCCCCCCc
Q 037561 83 NAPFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCR 162 (179)
Q Consensus 83 ~ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~g~HC~ 162 (179)
...+.+|+.+.|.-.+.+ +.|+... ++. . -+ + ....|....+.++.++||.||+.|++- |-
T Consensus 94 ~l~VP~G~~Vr~~vTS~D---ViHsf~I-P~l---g------ik-~-da~PG~~n~~~~~~~kpG~y~g~Cse~----CG 154 (168)
T 3s8f_B 94 PIEVPQGAEIVFKITSPD---VIHGFHV-EGT---N------IN-V-EVLPGEVSTVRYTFKRPGEYRIICNQY----CG 154 (168)
T ss_dssp SEEEETTSEEEEEEECSS---SCEEEEE-TTS---S------CE-E-EECTTBCEEEEEECCSCEEEEEECCSC----CS
T ss_pred EEEEeCCCeEEEEEecCC---ceEEEEE-CCC---C------eE-E-EecCCceeEEEEEeCCCEEEEEECCcC----CC
Confidence 367999999999987753 3688775 221 1 11 1 112343334578899999999999963 66
Q ss_pred CCc--eEEEEEec
Q 037561 163 EGR--MKFMVLPL 173 (179)
Q Consensus 163 ~Gq--MKlaV~v~ 173 (179)
.|- |+..|.|.
T Consensus 155 ~~Hs~M~g~V~V~ 167 (168)
T 3s8f_B 155 LGHQNMFGTIVVK 167 (168)
T ss_dssp TTGGGCEEEEEEE
T ss_pred CCcCCCEEEEEEe
Confidence 542 99988874
No 39
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=95.16 E-value=0.052 Score=38.91 Aligned_cols=72 Identities=7% Similarity=-0.011 Sum_probs=45.1
Q ss_pred CCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCCCCCCcC
Q 037561 84 APFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCRE 163 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~g~HC~~ 163 (179)
.++++||.+.|.+.+... ..|++..- +. . . -.....|....++|+.++||.|+|.|.. ||..
T Consensus 40 i~v~~G~~V~~~~~n~d~--~~H~~~i~-~~---~------~--~~~i~pG~~~~~~f~~~~~G~y~~~C~~----~~~~ 101 (112)
T 1iby_A 40 LVVKKGDAVKVVVENKSP--ISEGFSID-AF---G------V--QEVIKAGETKTISFTADKAGAFTIWCQL----HPKN 101 (112)
T ss_dssp EEEETTCEEEEEEEECSS--SCEEEEEG-GG---T------E--EEEECTTCEEEEEEECCSCEEEEEBCSS----SCTT
T ss_pred EEEeCCCEEEEEEEECCC--CeEEEEEc-CC---C------c--eeEeCCCCEEEEEEECCCCEEEEEECCC----CCch
Confidence 578999999998765421 26887642 21 1 1 0112334333345555899999999996 5854
Q ss_pred CceEEEEEec
Q 037561 164 GRMKFMVLPL 173 (179)
Q Consensus 164 GqMKlaV~v~ 173 (179)
+.|+..|.|.
T Consensus 102 ~~M~g~i~V~ 111 (112)
T 1iby_A 102 IHLPGTLNVV 111 (112)
T ss_dssp TBCCEEEEEE
T ss_pred HHCEEEEEEe
Confidence 3388777764
No 40
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}
Probab=95.16 E-value=0.094 Score=41.63 Aligned_cols=87 Identities=21% Similarity=0.209 Sum_probs=48.5
Q ss_pred CEEeCCEEEEE---eCCCCC---CCCCcceEEeCCcccCCcCCCCCc-cceeeecC----CCCcceEEEecC--------
Q 037561 85 PFYVNDVLVFK---YDPPND---TVFPHSVYQLPNLWSYLRCDLSRA-KMIANTTQ----GGGDGFEFVLKR-------- 145 (179)
Q Consensus 85 tF~VGDtLvF~---Y~~~~~---~~~~HsV~~V~~~~~Yd~C~~s~~-~~i~~~~~----G~~~~f~v~L~~-------- 145 (179)
.+++||.|-+- |..+.. ......+++| ++.+|++|+.... ..+..=.. -....|++++.+
T Consensus 33 ~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~V-s~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~fSP~p~G~ 111 (157)
T 2wo3_B 33 EVSINDYLDIYCPHYGAPLPPAERMEHYVLYMV-NGEGHASCDHRQRGFKRWECNRPAAPGGPLKFSEKFQLFTPFSLGF 111 (157)
T ss_dssp EECTTCEEEEECCCCCSSCCCGGGSCCEEEEEE-CHHHHHHTCCTTSEEEEEEECCTTCTTSSCEEEEECCSSCSSTTSC
T ss_pred EeccCCEEEEECCCCCCCCCCCCCceEEEEEEE-CHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEECCCCCCCe
Confidence 47789999876 433211 1234568898 9999999998652 21211111 011234444332
Q ss_pred ---cc-cEEEEeCCC---CCCCCcCCceEEEEEecC
Q 037561 146 ---WL-PYYFACGER---GGFHCREGRMKFMVLPLL 174 (179)
Q Consensus 146 ---~G-~~YFiCg~~---~g~HC~~GqMKlaV~v~~ 174 (179)
|| .||||+.-. .|+-|. . |||.|.+.+
T Consensus 112 EF~pG~~YY~ISTS~g~~~gg~C~-r-lkV~V~~~~ 145 (157)
T 2wo3_B 112 EFRPGHEYYYISATPPNAVDRPCL-R-LKVYVRPTQ 145 (157)
T ss_dssp CCCTTCEEEEEEECTTCSCCTTCC-E-EEEEECCCC
T ss_pred eeeCCCeEEEEEecCCCCCCCcce-e-EEEEEEcCC
Confidence 44 588888643 245675 3 666665543
No 41
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*
Probab=94.01 E-value=0.13 Score=41.84 Aligned_cols=86 Identities=14% Similarity=0.184 Sum_probs=48.1
Q ss_pred CEEeCCEEEEE---eCCCCC---CCCCcceEEeCCcccCCcCCCCC-ccceeeec---C-CCCcceEEEecC--------
Q 037561 85 PFYVNDVLVFK---YDPPND---TVFPHSVYQLPNLWSYLRCDLSR-AKMIANTT---Q-GGGDGFEFVLKR-------- 145 (179)
Q Consensus 85 tF~VGDtLvF~---Y~~~~~---~~~~HsV~~V~~~~~Yd~C~~s~-~~~i~~~~---~-G~~~~f~v~L~~-------- 145 (179)
..++||.|-+- |+.+.. ......+++| ++.+|++|+... +..+..=. . -+...|++++.+
T Consensus 51 ~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~V-s~e~y~sC~~~~~~~~~~~C~~P~~~~~p~kftikFQ~FSP~p~Gl 129 (182)
T 3czu_B 51 HVQLNDYVDIICPHYEDHSVADAAMEQYILYLV-EHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGK 129 (182)
T ss_dssp EECTTCEEEEECCCCC--CCCGGGSCCEEEEEE-CHHHHHHTCCCCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTSC
T ss_pred EeccCCEEEEECCCCCCCCCCCCCceEEEEEEE-CHHHhhhccCCCCCcEEEEeCCCCCCCCCcEEEEEEEEcCCCCCCe
Confidence 46889999875 433210 1235788899 999999999763 32221111 1 111234444332
Q ss_pred ---cc-cEEEEeCCCC--CCCCcCCceEEEEEecCC
Q 037561 146 ---WL-PYYFACGERG--GFHCREGRMKFMVLPLLR 175 (179)
Q Consensus 146 ---~G-~~YFiCg~~~--g~HC~~GqMKlaV~v~~~ 175 (179)
+| .||||+.-.+ |+.| |||.|.|..+
T Consensus 130 EF~pG~dYY~ISts~~~~gg~C----mrL~v~V~~k 161 (182)
T 3czu_B 130 EFKEGHSYYYISKPIHQHEDRC----LRLKVTVSGK 161 (182)
T ss_dssp CCCTTCEEEEEEEESSSCCCSC----CEEEEEECC-
T ss_pred eEeCCCeEEEEEccCCCCCCcc----eEEEEEEecC
Confidence 55 5888886431 2344 7888887644
No 42
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}
Probab=93.77 E-value=0.16 Score=39.60 Aligned_cols=88 Identities=16% Similarity=0.152 Sum_probs=51.8
Q ss_pred CEEeCCEEEEEeCCCCC-------CCCCcceEEeCCcccCCcCCCC-CccceeeecC-CCCcceEEEec-----------
Q 037561 85 PFYVNDVLVFKYDPPND-------TVFPHSVYQLPNLWSYLRCDLS-RAKMIANTTQ-GGGDGFEFVLK----------- 144 (179)
Q Consensus 85 tF~VGDtLvF~Y~~~~~-------~~~~HsV~~V~~~~~Yd~C~~s-~~~~i~~~~~-G~~~~f~v~L~----------- 144 (179)
..++||.|-+-=+..+. ......+++| ++.+|++|+.. .+..+..=.. -....|++++.
T Consensus 23 ~V~i~D~ldIiCP~~~~~~~~~~~~~E~~~lY~V-s~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~p~G~EF 101 (141)
T 3d12_B 23 YPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLV-EGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEF 101 (141)
T ss_dssp CCCTTCEEEEEECCCSSCCTTCCSSCCCCEEEEE-CSHHHHTTBCCSSCEEEEECCCSSSCEEEEEESSSCCSCCSCCCC
T ss_pred EecCCCEEEEECCCCCCCCCCCCCCceEEEEEEE-CHHHhccccCCCCCeEEEEeCCCCCCeEEEEEEEEcCCCCCceee
Confidence 46788999876333221 1246789999 99999999986 3322211110 01122222222
Q ss_pred Ccc-cEEEEeCCCC---------CCCCcCCceEEEEEec
Q 037561 145 RWL-PYYFACGERG---------GFHCREGRMKFMVLPL 173 (179)
Q Consensus 145 ~~G-~~YFiCg~~~---------g~HC~~GqMKlaV~v~ 173 (179)
+|| .||||+.-.+ ||-|..=.|||.|.|.
T Consensus 102 ~pG~~YY~ISts~G~~~gl~~~~gG~C~t~~Mkl~i~V~ 140 (141)
T 3d12_B 102 RSHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVG 140 (141)
T ss_dssp CTTCEEEEEECSCSSTTTTTCCBCSHHHHTCCEEEEECC
T ss_pred eCCCeEEEEecCCCCcccccccCCCccccceEEEEEEec
Confidence 244 5788876541 4578884499999985
No 43
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0
Probab=93.64 E-value=0.19 Score=38.80 Aligned_cols=39 Identities=15% Similarity=0.143 Sum_probs=27.4
Q ss_pred CEEeCCEEEEEeCCCCCC------CCCcceEEeCCcccCCcCCCCC
Q 037561 85 PFYVNDVLVFKYDPPNDT------VFPHSVYQLPNLWSYLRCDLSR 124 (179)
Q Consensus 85 tF~VGDtLvF~Y~~~~~~------~~~HsV~~V~~~~~Yd~C~~s~ 124 (179)
..++||.|-+-=+..+.. .....+++| ++.+|++|+...
T Consensus 23 ~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~V-s~~~y~~C~~~~ 67 (132)
T 3hei_B 23 HVQLNDYVDIICPHYEDHSVADAAMEQYILYLV-EHEEYQLCQPQS 67 (132)
T ss_dssp EECTTCEEEEECCCCCTTSSCGGGCCCEEEEEE-CHHHHHHTCCSC
T ss_pred EeCCCCeEEEECCCCCCCCCCCCCccEEEEEEe-CHHHhccccCCC
Confidence 467899997754332111 235788898 999999999764
No 44
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E
Probab=93.01 E-value=0.2 Score=38.89 Aligned_cols=88 Identities=16% Similarity=0.160 Sum_probs=51.8
Q ss_pred EEeCCEEEEEeCCCCCC----CCCcceEEeCCcccCCcCCCCC-ccceeeecCC-CCcceEEEec-----------Ccc-
Q 037561 86 FYVNDVLVFKYDPPNDT----VFPHSVYQLPNLWSYLRCDLSR-AKMIANTTQG-GGDGFEFVLK-----------RWL- 147 (179)
Q Consensus 86 F~VGDtLvF~Y~~~~~~----~~~HsV~~V~~~~~Yd~C~~s~-~~~i~~~~~G-~~~~f~v~L~-----------~~G- 147 (179)
.++||.|-+-=+..+.. .....+++| ++.+|++|+... +..+..=..- ...-|++.+. ++|
T Consensus 25 v~i~D~ldIiCP~~~~~~~~~~E~~~lY~V-s~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~~~G~eF~~g~ 103 (140)
T 2vsm_B 25 PQIGDKLDIICPKVDSKTVGQYEYYKVYMV-DKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNK 103 (140)
T ss_dssp CCTTCEEEEEECCCC---CCCCCBEEEEEE-CHHHHHHTBCCTTCCCSEEECCTTSCEEEEEESSSCCSCSSCCCCCTTE
T ss_pred ecCCCEEEEECCCCCCCCCCCceEEEEEEE-CHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCC
Confidence 45789998764333111 235789999 999999999873 2222221111 1122333322 355
Q ss_pred cEEEEeCCC---------CCCCCcCCceEEEEEecC
Q 037561 148 PYYFACGER---------GGFHCREGRMKFMVLPLL 174 (179)
Q Consensus 148 ~~YFiCg~~---------~g~HC~~GqMKlaV~v~~ 174 (179)
.||||+.-. .||-|..=+|||.|.|..
T Consensus 104 ~YY~Ists~g~~~gl~~~~gG~C~t~~mkl~i~V~~ 139 (140)
T 2vsm_B 104 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGH 139 (140)
T ss_dssp EEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETC
T ss_pred ceEEEecCCCCccccccccCCccccceEEEEEEecC
Confidence 477787654 135788855999999864
No 45
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=89.66 E-value=0.83 Score=42.84 Aligned_cols=76 Identities=13% Similarity=0.056 Sum_probs=48.3
Q ss_pred CCEEeCCEEEEEeCCCCC-CCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCC-CCCCC
Q 037561 84 APFYVNDVLVFKYDPPND-TVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGER-GGFHC 161 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~~~-~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~-~g~HC 161 (179)
.++++||.+.|....... .-+.|++..- +. . .+ .....|....++|++++||.|+|.|... +..|
T Consensus 515 I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~ip-~~-g--------v~--~~i~PG~t~t~~Fta~~pGtY~yhC~e~Cg~~H- 581 (595)
T 1fwx_A 515 FTVKEGDEVTVIVTNLDEIDDLTHGFTMG-NY-G--------VA--MEIGPQMTSSVTFVAANPGVYWYYCQWFCHALH- 581 (595)
T ss_dssp EEEETTCEEEEEEEECCCSTTCCEEEEET-TT-T--------EE--EEECTTCEEEEEEECCSCEEEEEECCSCCSTTC-
T ss_pred EEEECCCEEEEEEEeCCCCCCceeeEEec-CC-C--------cc--eeeCCCCeEEEEEECCCCEEEEEECCCCCCCCc-
Confidence 568889999999765311 1135888752 21 1 10 1223444445688899999999999952 1145
Q ss_pred cCCceEEEEEecC
Q 037561 162 REGRMKFMVLPLL 174 (179)
Q Consensus 162 ~~GqMKlaV~v~~ 174 (179)
.| |+..|.|.+
T Consensus 582 -~g-M~G~IiV~p 592 (595)
T 1fwx_A 582 -ME-MRGRMLVEP 592 (595)
T ss_dssp -TT-CEEEEEEEC
T ss_pred -cC-CEEEEEEEc
Confidence 37 888888765
No 46
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=89.37 E-value=0.51 Score=41.20 Aligned_cols=76 Identities=13% Similarity=0.093 Sum_probs=49.1
Q ss_pred CCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCCCCCCcC
Q 037561 84 APFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCRE 163 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~g~HC~~ 163 (179)
.+++.||+++|+....... .|++.. .....-..|.. ..|....++|+++++|.++|.|..+ +|=..
T Consensus 57 i~v~~Gd~v~~~~~N~~~~--~h~~~~-~g~~~~~~~~i---------~pG~~~~~~f~~~~~Gt~~y~~~~~--~h~~~ 122 (447)
T 2dv6_A 57 LVVHEGETVQVNLVNGEGA--QHDVVV-DQYAARSAIVN---------GKNASSTFSFVASKVGEFNYYCSIA--GHRQA 122 (447)
T ss_dssp EEEETTCEEEEEEECSSSS--CBCCEE-TTTTEECCCBC---------STTBEEEEEEECCSCEEEEEECCST--THHHH
T ss_pred EEEcCCCEEEEEEEcCCCC--ceEEEE-ccCCcccceec---------CCCCeEEEEEEcCCCEEEEEEeCCC--ChhhC
Confidence 6789999999888765211 388764 23222222322 2232233467778999999999998 78778
Q ss_pred CceEEEEEecC
Q 037561 164 GRMKFMVLPLL 174 (179)
Q Consensus 164 GqMKlaV~v~~ 174 (179)
| |+-.|.|..
T Consensus 123 G-m~G~i~V~~ 132 (447)
T 2dv6_A 123 G-MEGNIQVLP 132 (447)
T ss_dssp T-CEEEEEEES
T ss_pred C-CEEEEEEeC
Confidence 9 777666643
No 47
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=83.49 E-value=2.7 Score=39.85 Aligned_cols=76 Identities=11% Similarity=0.064 Sum_probs=49.0
Q ss_pred CCCEEeCCEEEEEeCCCCC-CCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCCCCCC
Q 037561 83 NAPFYVNDVLVFKYDPPND-TVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHC 161 (179)
Q Consensus 83 ~ktF~VGDtLvF~Y~~~~~-~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~g~HC 161 (179)
..++.+||.+.|....... .-+.|+...- + +. .+ + ....|....++++.++||.|+|.|++. |
T Consensus 559 eI~VP~GdtVrfiLTN~D~veDViHSF~IP-s---lG------IK-~-DaiPGrtnsvtFtadkPGvY~y~CSE~----C 622 (638)
T 3sbq_A 559 EFTVKQGDEVTVTITNIDQIEDVSHGFVVV-N---HG------VS-M-EISPQQTSSITFVADKPGLHWYYCSWF----C 622 (638)
T ss_dssp EEEEETTCEEEEEEEECCCSTTCCEEEEET-T---TT------EE-E-EECTTCEEEEEEECCSCEEEEEECCSC----C
T ss_pred EEEEecCceeEEEEecCCcCCCceeeeEec-C---CC------ce-e-eeCCCCeEEEEEEcCCCEEEEEECCCc----C
Confidence 3678999999998766310 1136988752 2 11 11 1 123343344578889999999999975 6
Q ss_pred cCCc--eEEEEEecC
Q 037561 162 REGR--MKFMVLPLL 174 (179)
Q Consensus 162 ~~Gq--MKlaV~v~~ 174 (179)
-.+- |+..|.|.+
T Consensus 623 Ga~Hs~M~G~ViVEP 637 (638)
T 3sbq_A 623 HALHMEMVGRMMVEP 637 (638)
T ss_dssp STTCTTCEEEEEEEC
T ss_pred CCCcccceEEEEEec
Confidence 6542 888888764
No 48
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=73.33 E-value=5.8 Score=33.29 Aligned_cols=83 Identities=17% Similarity=0.235 Sum_probs=50.2
Q ss_pred CCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCC---CCC
Q 037561 84 APFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERG---GFH 160 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~---g~H 160 (179)
.+++.||+|++++.....++..|.+.+- .....+. ..+ +.....|..-.|+|+++++|+++|-|-... ..|
T Consensus 66 i~~~~Gd~v~v~~~N~~~~~h~Hg~~~~-~~~~~~~---~~~--~~~i~PG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~ 139 (333)
T 1mzy_A 66 MIVHEGDYVELTLINPPENTMPHNIDFH-AATGALG---GGG--LTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWH 139 (333)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEET-TSCSGGG---GGG--GCCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHH
T ss_pred EEecCCCEEEEEEEECCCCcccccceec-CCCCCCC---CCc--eeEeCCCCEEEEEEECCCCEEEEEeecCCcccchhh
Confidence 4578999999988776444567887652 2111110 011 222344544456788899999999998751 015
Q ss_pred CcCCceEEEEEec
Q 037561 161 CREGRMKFMVLPL 173 (179)
Q Consensus 161 C~~GqMKlaV~v~ 173 (179)
=..| |.-.+.|.
T Consensus 140 ~~~G-l~G~~iV~ 151 (333)
T 1mzy_A 140 VVSG-MAGCIMVL 151 (333)
T ss_dssp HHTT-CEEEEEEE
T ss_pred hhCC-CEEEEEEc
Confidence 5678 65554443
No 49
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=71.63 E-value=7 Score=32.76 Aligned_cols=83 Identities=18% Similarity=0.270 Sum_probs=49.1
Q ss_pred CCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCC--CCCC
Q 037561 84 APFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERG--GFHC 161 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~--g~HC 161 (179)
.+++.||++++++.....+...|++.+- .. ... .+...+.....|..-.|+++++++|+++|-|.... ..|=
T Consensus 67 i~v~~Gd~v~v~~~N~~~~~~~h~~~~h-~~-~~~----~~~~~~~~i~pG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~ 140 (336)
T 1oe1_A 67 LVVHEGDYVQLTLVNPATNAMPHNVDFH-GA-TGA----LGGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHV 140 (336)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEET-TS-CSG----GGGGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHH
T ss_pred EEEcCCCEEEEEEEcCCCCCccccceEC-CC-CCC----CCCcceEEeCCCCEEEEEEECCCCeEEEEecCCCCchhHHH
Confidence 3578999999887765323346877653 11 110 01111222345544456788899999999999751 0244
Q ss_pred cCCceEEEEEec
Q 037561 162 REGRMKFMVLPL 173 (179)
Q Consensus 162 ~~GqMKlaV~v~ 173 (179)
..| |.-.+.|.
T Consensus 141 ~~G-l~G~liV~ 151 (336)
T 1oe1_A 141 VSG-MSGTLMVL 151 (336)
T ss_dssp HTT-CEEEEEEE
T ss_pred hCC-CeEEEEEe
Confidence 578 76665554
No 50
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=67.25 E-value=7.4 Score=29.38 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=19.9
Q ss_pred cceEEEec-----CcccEEEEeCCCCCCCCcCCceEEEEEe
Q 037561 137 DGFEFVLK-----RWLPYYFACGERGGFHCREGRMKFMVLP 172 (179)
Q Consensus 137 ~~f~v~L~-----~~G~~YFiCg~~~g~HC~~GqMKlaV~v 172 (179)
+.++++++ ++|.|-|+|+ + |= | ||-.|.|
T Consensus 91 es~~vtf~~~~l~~~G~y~f~C~-g---H~--~-M~G~v~V 124 (125)
T 3fsa_A 91 EKDSVTFDVSKLKEGEQYMFFCA-A---HA--A-MKGTLTL 124 (125)
T ss_dssp CEEEEEEEGGGC---CCEEEECS-S---ST--T-CEEEEEE
T ss_pred cEEEEEEeCcCcCCCccEEEEcC-C---CC--C-cEEEEEE
Confidence 44455555 5699999999 4 65 8 8888776
No 51
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=59.40 E-value=16 Score=30.48 Aligned_cols=82 Identities=13% Similarity=0.223 Sum_probs=48.3
Q ss_pred CCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCC--CCCC
Q 037561 84 APFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERG--GFHC 161 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~--g~HC 161 (179)
.+++.||++++++.....+...|.+.+- .... .....++.....|..-.|.|+++++|++||-|.... ..|=
T Consensus 73 i~v~~Gd~v~v~~~N~~~~~~~hg~~~~-~~~~-----~~~~~~~~~i~PG~~~~y~~~~~~~Gt~wyH~h~~~~~~~~~ 146 (340)
T 2bw4_A 73 MVVHENDYVELRLINPDTNTLLHNIDFH-AATG-----ALGGGALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHV 146 (340)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEET-TSCS-----GGGGGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHH
T ss_pred EEEcCCCEEEEEEEeCCCCCccCcceeC-CcCC-----CCCCccceEeCCCCEEEEEEECCCCeEEEEEcCCCCchhhHH
Confidence 3578999999988875323456877642 2111 001111222344544456788889999999999751 0145
Q ss_pred cCCceEEEEEe
Q 037561 162 REGRMKFMVLP 172 (179)
Q Consensus 162 ~~GqMKlaV~v 172 (179)
..| |.-.+.|
T Consensus 147 ~~G-l~G~~iV 156 (340)
T 2bw4_A 147 TSG-MNGAIMV 156 (340)
T ss_dssp HTT-CEEEEEE
T ss_pred hCc-CEEEEEE
Confidence 578 6555544
No 52
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=51.03 E-value=13 Score=31.79 Aligned_cols=72 Identities=17% Similarity=0.242 Sum_probs=45.4
Q ss_pred CCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCCCCCCcC
Q 037561 84 APFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCRE 163 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~g~HC~~ 163 (179)
-.+.+|+.+.|.-.+.+ +.|+-.. |+ +. .+ + .--.|......++.++||.||..|++- |-.
T Consensus 191 lvlP~g~~V~~~ltS~D---ViHsf~i-P~---lg------~k-~-daiPG~~n~~~~~~~~~G~y~g~CsE~----CG~ 251 (298)
T 3hb3_B 191 VVVPVGKKVLVQVTATD---VIHAWTI-PA---FA------VK-Q-DAVPGRIAQLWFSVDQEGVYFGQCSEL----CGI 251 (298)
T ss_dssp EEEESSSEEEEEEEESS---SCEEEEE-GG---GT------EE-E-EECTTCCEEEEEECSSSEEEEECCCSC----CST
T ss_pred EEEEcCCEEEEEEEeCC---ccceeeE-cc---cC------ce-E-EecCCceEEEEEEeCCCEEEEEEcccc----cCc
Confidence 34567888888877653 2476554 11 10 00 1 112333333478899999999999975 877
Q ss_pred Cc--eEEEEEecC
Q 037561 164 GR--MKFMVLPLL 174 (179)
Q Consensus 164 Gq--MKlaV~v~~ 174 (179)
|- |++.|.|.+
T Consensus 252 ~Hs~M~~~v~vvs 264 (298)
T 3hb3_B 252 NHAYMPIVVKAVS 264 (298)
T ss_dssp TTTSCCEEEEEEC
T ss_pred CccCCeeEEEEEc
Confidence 63 899888765
No 53
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=50.58 E-value=15 Score=29.92 Aligned_cols=71 Identities=23% Similarity=0.314 Sum_probs=45.1
Q ss_pred CCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCCCCCCcC
Q 037561 84 APFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCRE 163 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~g~HC~~ 163 (179)
..+.+|+.+.|.-.+.+ +.|+-..- ++. .+ + .--.|-...+.++.+++|.||..|++- |-.
T Consensus 43 l~lP~g~~V~~~lTS~D---ViHSF~IP----~lg------vK-~-daiPGr~n~l~~~~~~pG~y~g~CsE~----CG~ 103 (205)
T 1cyx_A 43 IAFPANTPVYFKVTSNS---VMHSFFIP----RLG------SQ-I-YAMAGMQTRLHLIANEPGTYDGICAEI----CGP 103 (205)
T ss_dssp EEEETTSCEEEEEEESS---SCEEEEEG----GGT------EE-E-EECTTCCEEEEECCSSSEEEEEEECSC----CST
T ss_pred EEEeCCCEEEEEEecCC---ceeeEEec----ccC------cE-E-EecCCceEEEEEEeCCCeEEEEEcccc----ccc
Confidence 45677888888887653 24766542 111 00 1 111333334477889999999999975 877
Q ss_pred Cc--eEEEEEec
Q 037561 164 GR--MKFMVLPL 173 (179)
Q Consensus 164 Gq--MKlaV~v~ 173 (179)
|- |++.|.|.
T Consensus 104 ~Hs~M~~~v~vv 115 (205)
T 1cyx_A 104 GHSGMKFKAIAT 115 (205)
T ss_dssp TSTTCCEEEEEE
T ss_pred chhhceEEEEEE
Confidence 63 88888876
No 54
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=48.16 E-value=16 Score=30.51 Aligned_cols=72 Identities=19% Similarity=0.172 Sum_probs=46.6
Q ss_pred CCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCCCCCCcC
Q 037561 84 APFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCRE 163 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~g~HC~~ 163 (179)
-.+.+|+.+.|.-.+.+ +.|+-..- + +. .+ + .--.|-.....++.++||.||..|++- |-.
T Consensus 173 l~lP~g~~v~~~~tS~D---ViHsf~ip-~---l~------~k-~-da~PG~~n~~~~~~~~~G~y~g~Cse~----CG~ 233 (262)
T 2gsm_B 173 MVVPVNKTVVVQVTGAD---VIHSWTVP-A---FG------VK-Q-DAVPGRLAQLWFRAEREGIFFGQCSEL----CGI 233 (262)
T ss_dssp EEEETTSEEEEEEEESS---SCEEEEEG-G---GT------EE-E-EECBTCCEEEEEECCSCEEEEECCCSC----CST
T ss_pred EEEecCCEEEEEEEECc---ccceeeec-c---cC------ce-E-EecCCceeEEEEecCCcEEEEEEChHh----ccc
Confidence 45788888888888753 24776542 1 11 00 1 111233333478899999999999975 888
Q ss_pred Cc--eEEEEEecC
Q 037561 164 GR--MKFMVLPLL 174 (179)
Q Consensus 164 Gq--MKlaV~v~~ 174 (179)
|- |++.|.|.+
T Consensus 234 ~H~~M~~~v~vv~ 246 (262)
T 2gsm_B 234 SHAYMPITVKVVS 246 (262)
T ss_dssp TGGGCCEEEEEEC
T ss_pred CcccCeEEEEEEc
Confidence 63 888888765
No 55
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=47.12 E-value=14 Score=30.21 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=27.0
Q ss_pred cceEEEecCcccEEEEeCCCCCCCCcCCc--eEEEEEecC
Q 037561 137 DGFEFVLKRWLPYYFACGERGGFHCREGR--MKFMVLPLL 174 (179)
Q Consensus 137 ~~f~v~L~~~G~~YFiCg~~~g~HC~~Gq--MKlaV~v~~ 174 (179)
....++.++||.+|..|++- |-.|- |++.|.|.+
T Consensus 180 n~~~~~~~~~G~y~g~Cse~----CG~~Hs~M~~~v~vv~ 215 (227)
T 1v54_B 180 NQTTLMSSRPGLYYGQCSEI----CGSNHSFMPIVLELVP 215 (227)
T ss_dssp EEEEECCSSCEEEEECCCSC----CSTTGGGCCEEEEEEC
T ss_pred EEEEEecCCcEEEEEEehhh----cccccccCeEEEEEEc
Confidence 33467889999999999975 88874 888888764
No 56
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=45.32 E-value=11 Score=32.74 Aligned_cols=83 Identities=19% Similarity=0.206 Sum_probs=43.2
Q ss_pred CCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCC-CCCCCc
Q 037561 84 APFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGER-GGFHCR 162 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~-~g~HC~ 162 (179)
.+++.||++++.+...-.+...|++..= .....+ ..+ .......|..-.|.|+++++|+++|-|-.. ...|=.
T Consensus 62 i~v~~Gd~v~v~~~N~l~~~~~~~iH~H-G~~~~d----G~~-~~~~i~pg~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~ 135 (442)
T 2zoo_A 62 IRVREGDEIEFNLSNHPSSKMPHNIDLH-AVTGPG----GGA-ESSFTAPGHTSTFNFKALNPGLYIYHCATAPVGMHIA 135 (442)
T ss_dssp EEEETTCEEEEEEEECTTCSSCBCCEET-TCCSGG----GGG-GGCCBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHH
T ss_pred EEEeCCCEEEEEEEECCCCCCCCCEEec-CCcCCC----CCC-ccEEECCCCEEEEEEEcCCCeEEEEecCCCChHHHHh
Confidence 3568899999877654111112333321 110001 001 011133454445678888999999999431 014556
Q ss_pred CCceEEEEEec
Q 037561 163 EGRMKFMVLPL 173 (179)
Q Consensus 163 ~GqMKlaV~v~ 173 (179)
.| |.-.+.|.
T Consensus 136 ~G-l~G~~iv~ 145 (442)
T 2zoo_A 136 NG-MYGLILVE 145 (442)
T ss_dssp TT-CEEEEEEE
T ss_pred Cc-cEEEEEEe
Confidence 78 65555544
No 57
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=44.09 E-value=22 Score=29.86 Aligned_cols=83 Identities=19% Similarity=0.203 Sum_probs=44.5
Q ss_pred CCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCC-CCCCc
Q 037561 84 APFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERG-GFHCR 162 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~-g~HC~ 162 (179)
.+++.||++++++.........|++-.= .....+. .+. ......|..-.|+++++++|++||-|.... +.|=.
T Consensus 72 i~v~~Gd~v~v~~~N~~~~~~~~~ih~H-G~~~~dG----~~~-~~~i~PG~~~~y~f~~~~~Gt~wyH~h~~~~~~~~~ 145 (327)
T 1kbv_A 72 IRVREGDTVEVEFSNNPSSTVPHNVDFH-AATGQGG----GAA-ATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIA 145 (327)
T ss_dssp EEEETTCEEEEEEEECTTCSSCBCCEET-TCCSGGG----GTT-TTCBCTTEEEEEEEECCSCEEEEEECCCSSHHHHHH
T ss_pred EEEeCCCEEEEEEEECCCCCCceeeEeC-ccccCCC----CCc-ceeecCCCEEEEEEECCCCeEEEEEeCCCChhhhhh
Confidence 4688999999987655211123444321 0001110 010 011234443456778889999999997631 13556
Q ss_pred CCceEEEEEec
Q 037561 163 EGRMKFMVLPL 173 (179)
Q Consensus 163 ~GqMKlaV~v~ 173 (179)
.| |.-.+.|.
T Consensus 146 ~G-l~G~~iV~ 155 (327)
T 1kbv_A 146 NG-MYGLILVE 155 (327)
T ss_dssp TT-CEEEEEEE
T ss_pred cc-eEEEEEEe
Confidence 78 76665554
No 58
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=42.58 E-value=13 Score=31.01 Aligned_cols=34 Identities=12% Similarity=-0.001 Sum_probs=26.7
Q ss_pred eEEEecCcccEEEEeCCCCCCCC-cCCceEEEEEecCC
Q 037561 139 FEFVLKRWLPYYFACGERGGFHC-REGRMKFMVLPLLR 175 (179)
Q Consensus 139 f~v~L~~~G~~YFiCg~~~g~HC-~~GqMKlaV~v~~~ 175 (179)
+.|+.+++|.++|.|-.. .|+ +.| |.-.+.|...
T Consensus 285 v~v~a~~pG~y~~~ch~~--~h~~~~G-m~~~~~v~~~ 319 (333)
T 1mzy_A 285 ALYKFLQPGVYAYVNHNL--IEAVHKG-ATAHVLVEGE 319 (333)
T ss_dssp EEEECCSCEEEEEEESSH--HHHHTTC-CEEEEEEESC
T ss_pred EEEEcCCCEEEEEecChh--hhHhhCC-CEEEEEEcCC
Confidence 466778899999999997 899 999 6666665443
No 59
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=36.51 E-value=24 Score=24.78 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=14.4
Q ss_pred CCEEeCCEEEEEeCCC
Q 037561 84 APFYVNDVLVFKYDPP 99 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~ 99 (179)
...++||.|+|+|...
T Consensus 76 ~~L~~GD~lvF~~~~~ 91 (104)
T 1yel_A 76 NNLEDGKYLQFIYDRD 91 (104)
T ss_dssp HTCCTTCEEEEEECSS
T ss_pred cCCCCCCEEEEEEcCC
Confidence 5799999999999976
No 60
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=36.42 E-value=19 Score=30.06 Aligned_cols=33 Identities=9% Similarity=-0.088 Sum_probs=26.1
Q ss_pred eEEEecCcccEEEEeCCCCCCCC-cCCceEEEEEecC
Q 037561 139 FEFVLKRWLPYYFACGERGGFHC-REGRMKFMVLPLL 174 (179)
Q Consensus 139 f~v~L~~~G~~YFiCg~~~g~HC-~~GqMKlaV~v~~ 174 (179)
+.|+.+++|.++|.|... .|+ +.| |.-.+.|..
T Consensus 285 vlv~~~~pG~y~~~~h~~--~~~~~~G-~~~~~~V~~ 318 (336)
T 1oe1_A 285 ALYTFKQPGVYAYLNHNL--IEAFELG-AAGHIKVEG 318 (336)
T ss_dssp EEEECCSCEEEEEEESSH--HHHHTTS-CEEEEEEES
T ss_pred EEEEcCCCceEEEEechh--hccccCC-CeEEEEECC
Confidence 466778899999999987 788 889 776666644
No 61
>1jb0_M Photosystem 1 reaction centre subunit XII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.19.1 PDB: 3pcq_M*
Probab=34.35 E-value=36 Score=19.87 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=17.3
Q ss_pred CcchhhHHHHHHH--HHHHHhhhhhcc
Q 037561 1 MAFTSAHSLILIL--SAASMLTVSMAN 25 (179)
Q Consensus 1 m~~~~~~~~~~~~--~~~~~~~v~~a~ 25 (179)
|.++..|.++.++ +..+.+|+-++.
T Consensus 1 m~Isd~Qi~iAL~~Al~~~iLA~rLg~ 27 (31)
T 1jb0_M 1 MALTDTQVYVALVIALLPAVLAFRLST 27 (31)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788889884433 367778777653
No 62
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=33.84 E-value=25 Score=30.31 Aligned_cols=71 Identities=18% Similarity=0.203 Sum_probs=47.5
Q ss_pred CCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCCCCCCcC
Q 037561 84 APFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCRE 163 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~g~HC~~ 163 (179)
-.+.+|..+.|.-.+.+ +.|+-.. ++ +. .+ + .--.|-...+.++.++||.||..|++- |-.
T Consensus 153 l~lP~g~~V~~~lTS~D---ViHsf~I-P~---lg------~k-~-DaiPGr~n~~~~~~~~~G~y~g~CsE~----CG~ 213 (315)
T 1fft_B 153 IAFPANTPVYFKVTSNS---VMNSFFI-PR---LG------SQ-I-YAMAGMQTRLHLIANEPGTYDGISASY----SGP 213 (315)
T ss_dssp CCCCSSSEEEEEECBSS---SCEEEEE-GG---GT------EE-E-EECBTSCEEEEEECCSCBCCEEBCCSC----CST
T ss_pred EEEeCCCEEEEEEEeCC---ccceeee-cc---cC------cE-E-eecCCcceeeEEecCCCeEEEEecccc----chh
Confidence 56889999999998864 3477664 21 11 00 1 111233334478899999999999965 877
Q ss_pred Cc--eEEEEEec
Q 037561 164 GR--MKFMVLPL 173 (179)
Q Consensus 164 Gq--MKlaV~v~ 173 (179)
|- |++.|.|.
T Consensus 214 ~Hs~M~~~v~vv 225 (315)
T 1fft_B 214 GFSGMKFKAIAT 225 (315)
T ss_dssp TTTTCCEECCBC
T ss_pred hHHhccceEEEe
Confidence 63 89988877
No 63
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=33.66 E-value=1.1e+02 Score=27.58 Aligned_cols=82 Identities=15% Similarity=0.127 Sum_probs=49.0
Q ss_pred CCEEeCCEEEEEeCCCC----CCCCCcceEEeCCcccCCc-CCCCCccceeeecCCCCcceEEEec-CcccEEEEeCCCC
Q 037561 84 APFYVNDVLVFKYDPPN----DTVFPHSVYQLPNLWSYLR-CDLSRAKMIANTTQGGGDGFEFVLK-RWLPYYFACGERG 157 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~~----~~~~~HsV~~V~~~~~Yd~-C~~s~~~~i~~~~~G~~~~f~v~L~-~~G~~YFiCg~~~ 157 (179)
.+++.||+|+.+....- .++.-|.+.+- .....|. -..+.. +| ..|..-.|+++++ .+|++||=|-..
T Consensus 36 i~~~~Gd~v~v~v~N~l~~~~tsiHwHG~~~~-~~~~~DG~~~vtq~-pI---~PG~~~~Y~f~~~~~~GT~wYH~H~~- 109 (534)
T 1zpu_A 36 ITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQN-GTASMDGVPFLTQC-PI---APGSTMLYNFTVDYNVGTYWYHSHTD- 109 (534)
T ss_dssp EEEETTCEEEEEEECCCSSCCBCCEEETCCCT-TCGGGSCCBTTTBC-CB---CTTCEEEEEEECSSCCEEEEEECCSS-
T ss_pred EEEECCCEEEEEEEeCCCCCCeeEEcCCcccC-CCCcccCCCccccC-Cc---CCCCeEEEEEEeCccceeEEEEEcCc-
Confidence 57889999999988752 23444665542 1111111 000100 12 2444445688888 899999999987
Q ss_pred CCCCcCCceEEEEEec
Q 037561 158 GFHCREGRMKFMVLPL 173 (179)
Q Consensus 158 g~HC~~GqMKlaV~v~ 173 (179)
.|=..| |.-.+.|.
T Consensus 110 -~q~~~G-l~G~liV~ 123 (534)
T 1zpu_A 110 -GQYEDG-MKGLFIIK 123 (534)
T ss_dssp -SGGGGT-CEEEEEEE
T ss_pred -ccccCc-ceeeEEeC
Confidence 777778 65554443
No 64
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=33.44 E-value=6.6 Score=32.76 Aligned_cols=84 Identities=10% Similarity=-0.054 Sum_probs=32.7
Q ss_pred CCEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCCCCCCcC
Q 037561 84 APFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCRE 163 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~g~HC~~ 163 (179)
.+++.||++.|..-........|.+.. ....+.. +......+ ....|..-.+.|+.+++|.+.|.|-.. .|-..
T Consensus 217 l~v~~G~~vrlrliN~g~~~~~h~~hl--hG~~~~~-dG~~~dtv-~l~pger~~v~~~~~~pG~~~~hch~~--~H~~~ 290 (306)
T 1sdd_A 217 ITVCAHDHISWHLIGMSSGPELFSIHF--NGQVLEQ-NHHKISAI-TLVSATSTTANMTVSPEGRWTIASLIP--RHFQA 290 (306)
T ss_dssp CCCCCC------BBCCCSSSCEECCBC--SSTTCEE-TTEECSCC-CEETTCCBC--------CCCCCBCCST--TTGGG
T ss_pred eEEcCCCEEEEEEEeCCCCCccEEEEE--CCcEeee-CCEEcceE-EECCCcEEEEEEEcCCCeEEEEEeCCh--HHHhc
Confidence 467789999888776522111232221 1111111 00000001 112333333467778899999999998 99999
Q ss_pred CceEEEEEecC
Q 037561 164 GRMKFMVLPLL 174 (179)
Q Consensus 164 GqMKlaV~v~~ 174 (179)
| |...+.|..
T Consensus 291 G-M~~~~~V~~ 300 (306)
T 1sdd_A 291 G-MQAYIDIKN 300 (306)
T ss_dssp T-CBCCC----
T ss_pred C-CeEEEEEec
Confidence 9 766655543
No 65
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=32.13 E-value=16 Score=25.81 Aligned_cols=16 Identities=31% Similarity=0.584 Sum_probs=12.2
Q ss_pred CCEEeCCEEEEE-eCCC
Q 037561 84 APFYVNDVLVFK-YDPP 99 (179)
Q Consensus 84 ktF~VGDtLvF~-Y~~~ 99 (179)
+.|++||.|+|. |+.+
T Consensus 36 r~~~vGD~l~l~E~~~g 52 (83)
T 3iuw_A 36 RNFQVGDILILEEYMNG 52 (83)
T ss_dssp SCCCTTCEEEEEEEETT
T ss_pred cCCCCCCEEEEEEccCC
Confidence 359999999995 6543
No 66
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=32.02 E-value=17 Score=29.88 Aligned_cols=32 Identities=9% Similarity=-0.055 Sum_probs=26.4
Q ss_pred eEEEecCcccEEEEeCCCCCCCCcCCceEEEEEec
Q 037561 139 FEFVLKRWLPYYFACGERGGFHCREGRMKFMVLPL 173 (179)
Q Consensus 139 f~v~L~~~G~~YFiCg~~~g~HC~~GqMKlaV~v~ 173 (179)
+.++.+.||.+.|.|-.. .|=+.| |.-.+.|.
T Consensus 256 v~~~~~~pG~~~~hCH~~--~H~~~G-M~~~~~V~ 287 (288)
T 3gdc_A 256 LELRFPYPGKFMFHAHKT--EFAELG-WMGFFEVS 287 (288)
T ss_dssp EEECCCSCEEEEEECSSH--HHHTTT-CEEEEEEE
T ss_pred EEEECCCCEEEEEEecCh--HHHhcC-CCEEEEEe
Confidence 355667899999999998 999999 77777664
No 67
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=29.59 E-value=1.4e+02 Score=24.32 Aligned_cols=82 Identities=13% Similarity=0.095 Sum_probs=44.1
Q ss_pred CCEEeCCEEEEEeCCC---CCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCC-CC
Q 037561 84 APFYVNDVLVFKYDPP---NDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERG-GF 159 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~---~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~-g~ 159 (179)
.+++.||+++..+... .+++..|.+. . . ..|.= .... ......|..-.|+++++.+|+++|-|-... ..
T Consensus 68 i~~~~Gd~v~v~~~N~~~~~~~iH~HG~~-~-~--~~DG~--p~~~-~~~i~PG~~~~y~f~~~~~Gt~~yH~H~~~~~~ 140 (288)
T 3gdc_A 68 LWAREGDALRIHFTNAGAHPHTIHFHGVH-R-A--TMDGT--PGIG-AGSIAPGQSFTYEFDATPFGTHLYHCHQSPLAP 140 (288)
T ss_dssp EEEETTCEEEEEEEECSSSCBCCEESSCC-C-G--GGSCC--TTST-TCSBCTTCEEEEEEECCSCEEEEEECCCSSHHH
T ss_pred EEEeCCCEEEEEEEeCCCCcccEEecccc-c-c--ccCCC--CCcc-ceeECCCCEEEEEEEcCCCccEEEEecCcchHH
Confidence 4678999999888654 2223334432 1 1 11110 0000 011234444456888899999999998751 02
Q ss_pred CCcCCceEEEEEec
Q 037561 160 HCREGRMKFMVLPL 173 (179)
Q Consensus 160 HC~~GqMKlaV~v~ 173 (179)
|=..| |.-.+.|.
T Consensus 141 ~~~~G-l~G~liV~ 153 (288)
T 3gdc_A 141 HIAKG-LYGGFIVE 153 (288)
T ss_dssp HHHTT-CEEEEEEE
T ss_pred HHhCc-CeEEEEEe
Confidence 44578 65444443
No 68
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=25.90 E-value=56 Score=27.31 Aligned_cols=65 Identities=12% Similarity=0.153 Sum_probs=0.0
Q ss_pred CEEeCCEEEEEeCCC---CCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEe
Q 037561 85 PFYVNDVLVFKYDPP---NDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFAC 153 (179)
Q Consensus 85 tF~VGDtLvF~Y~~~---~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiC 153 (179)
+++.||+|+.++... ..++.-|.+.+- .....|.=.... -.....|..-.|.++++++|++||-|
T Consensus 37 ~~~~Gd~v~v~~~N~l~~~~siH~HG~~~~-~~~~~DG~p~~t---~~~i~PG~~~~y~f~~~~~Gt~wYH~ 104 (318)
T 3g5w_A 37 HVMEGDDVTVNVTNMTTLPHTIHWHGMLQR-GTWQSDGVPHAT---QHAIEPGDTFTYKFKAEPAGTMWYHC 104 (318)
T ss_dssp EEETTCEEEEEEEECSSSCBCCEEETCCCT-TCGGGSCCBTTT---BCCBCTTCEEEEEEECCSCEEEEEEC
T ss_pred EEeCCCEEEEEEEeCCCCceeEEecCcCCC-CCcccCCCcccc---cccCCCCCEEEEEEEcCCCEEEEEEc
No 69
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=25.77 E-value=44 Score=27.91 Aligned_cols=34 Identities=15% Similarity=-0.026 Sum_probs=25.8
Q ss_pred eEEEecCcccEEEEeCCCCCCCC-cCCceEEEEEecCC
Q 037561 139 FEFVLKRWLPYYFACGERGGFHC-REGRMKFMVLPLLR 175 (179)
Q Consensus 139 f~v~L~~~G~~YFiCg~~~g~HC-~~GqMKlaV~v~~~ 175 (179)
+.|+.+++|.++|.|-.. .|| ..| |.-.+.+...
T Consensus 274 v~v~~~~pG~y~l~~h~~--~~~~~~g-~~a~l~~~g~ 308 (327)
T 1kbv_A 274 VEFKVDIPGNYTLVDHSI--FRAFNKG-ALGQLKVEGA 308 (327)
T ss_dssp EEEEECSCEEEEEEESST--HHHHHSS-CEEEEEEESC
T ss_pred EEEEeCCCeEEEEEeccc--cccccCC-cEEEEEECCC
Confidence 466777899999999988 888 778 6666665443
No 70
>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata} PDB: 3qjo_A
Probab=24.03 E-value=65 Score=29.58 Aligned_cols=78 Identities=9% Similarity=0.142 Sum_probs=44.9
Q ss_pred CEEeCCEEEEEeCCCCCCCCCcceEEeCCcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCCCCCCcCC
Q 037561 85 PFYVNDVLVFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGGFHCREG 164 (179)
Q Consensus 85 tF~VGDtLvF~Y~~~~~~~~~HsV~~V~~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~g~HC~~G 164 (179)
..+-|-.+.|.=-... +..-++.+.+-.+...|....- ....+.-| ++---++|.|||..+.. .-|++|
T Consensus 414 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~--~~~~~~ 482 (491)
T 3l6w_A 414 VVKRGTKIMFMSVDEA---VTTPMLNLGSYTAMFKCKVPPF-SFHAFELG-----KMYSVESGDYFMTASTT--ELCNDN 482 (491)
T ss_pred EeecCCEEEEEecccc---hhhHHHhhhhhhhhhccccCCC-ccCccccc-----ceEecCCCceEecCChH--HHHhCC
Confidence 4566777777433321 1122333334445567887531 12222222 23333589999999998 889999
Q ss_pred ceEEEEEec
Q 037561 165 RMKFMVLPL 173 (179)
Q Consensus 165 qMKlaV~v~ 173 (179)
..|+.|.|.
T Consensus 483 ~~~~~~~~~ 491 (491)
T 3l6w_A 483 NLRIHVHVD 491 (491)
T ss_pred ceeEEEEeC
Confidence 448888873
No 71
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=23.33 E-value=1.4e+02 Score=26.63 Aligned_cols=82 Identities=10% Similarity=0.024 Sum_probs=48.7
Q ss_pred CCEEeCCEEEEEeCCCC----CCCCCcceEEeCCcccCCc-CCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCCC
Q 037561 84 APFYVNDVLVFKYDPPN----DTVFPHSVYQLPNLWSYLR-CDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGG 158 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~~----~~~~~HsV~~V~~~~~Yd~-C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~g 158 (179)
.+++.||+|+.+....- .++.-|.+.+- .....|. -..+. .....|..-.|+++++.+|++||=|-..
T Consensus 36 I~~~~GD~v~v~v~N~l~~~~tsiHwHGl~~~-~~~~~DGv~~vtq----~~I~PG~s~tY~f~~~~~GT~wYHsH~~-- 108 (552)
T 1aoz_A 36 IRANAGDSVVVELTNKLHTEGVVIHWHGILQR-GTPWADGTASISQ----CAINPGETFFYNFTVDNPGTFFYHGHLG-- 108 (552)
T ss_dssp EEEETTCEEEEEEEECCSSCCBCEEEETCCCT-TCGGGSCCBTTTB----CCBCTTCEEEEEEECCSCEEEEEEECST--
T ss_pred EEEeCCCEEEEEEEeCCCCCCeeEEeCCCccC-CCcccCCCccccc----CCcCCCCeEEEEEECCCCEEEEEEECch--
Confidence 57889999998887652 22344565542 1111121 00000 0123444445688889999999999987
Q ss_pred CCCcCCceEEEEEec
Q 037561 159 FHCREGRMKFMVLPL 173 (179)
Q Consensus 159 ~HC~~GqMKlaV~v~ 173 (179)
.+=..| |--.+.|.
T Consensus 109 ~q~~~G-l~G~liV~ 122 (552)
T 1aoz_A 109 MQRSAG-LYGSLIVD 122 (552)
T ss_dssp TTGGGT-CEEEEEEE
T ss_pred hHHhcc-CeeeEEEe
Confidence 777788 75555543
No 72
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=22.24 E-value=44 Score=30.58 Aligned_cols=33 Identities=15% Similarity=-0.022 Sum_probs=27.1
Q ss_pred eEEEecCcccEEEEeCCCCCCCCcCCceEEEEEecC
Q 037561 139 FEFVLKRWLPYYFACGERGGFHCREGRMKFMVLPLL 174 (179)
Q Consensus 139 f~v~L~~~G~~YFiCg~~~g~HC~~GqMKlaV~v~~ 174 (179)
+.|..++||.+.|-|-.. .|-..| |...+.|..
T Consensus 295 v~~~~~~pG~w~~hch~~--~h~~~G-m~~~~~V~~ 327 (647)
T 1sdd_B 295 LEMKASKPGWWLLDTEVG--EIQRAG-MQTPFLIVD 327 (647)
T ss_dssp EEEECCSSEEEEEECCCH--HHHTTT-CEEEEEEEC
T ss_pred EEEEeccceEeecccCcc--cccccc-cccceeeec
Confidence 466778899999999998 999999 777776643
No 73
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=22.16 E-value=31 Score=23.56 Aligned_cols=17 Identities=24% Similarity=0.131 Sum_probs=13.9
Q ss_pred CCCCEEeCCEEEEEeCCC
Q 037561 82 QNAPFYVNDVLVFKYDPP 99 (179)
Q Consensus 82 ~~ktF~VGDtLvF~Y~~~ 99 (179)
+| +|.+||.|++--+.+
T Consensus 27 rN-~f~~GD~iEi~~P~g 43 (89)
T 4he6_A 27 RN-HFRPGDEVEFFGPEI 43 (89)
T ss_dssp SS-CBCTTCEEEEESTTS
T ss_pred cC-CcCCCCEEEEEcCCC
Confidence 44 899999999986655
No 74
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=20.89 E-value=82 Score=30.97 Aligned_cols=77 Identities=13% Similarity=0.012 Sum_probs=51.9
Q ss_pred CCEEeCCEEEEEeCCCCCCCCCcceEEeC-----CcccCCcCCCCCccceeeecCCCCcceEEEecCcccEEEEeCCCCC
Q 037561 84 APFYVNDVLVFKYDPPNDTVFPHSVYQLP-----NLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWLPYYFACGERGG 158 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~~~~~~~HsV~~V~-----~~~~Yd~C~~s~~~~i~~~~~G~~~~f~v~L~~~G~~YFiCg~~~g 158 (179)
..+..||.++..-..-...+..|++.+-. +...+++|... .|....+.++...+|.+++-|-+.
T Consensus 634 l~~~~gd~v~~~v~~~g~~~~~Hgl~~~g~t~~~dG~~~~t~~i~---------pg~~~t~~~~~~~~Gt~~~h~h~~-- 702 (1065)
T 2j5w_A 634 LTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYLWRGERRDTANLF---------PQTSLTLHMWPDTEGTFNVECLTT-- 702 (1065)
T ss_dssp CEEETTCCEEEEEECCCSTTCCEEEEETTCCEEETTEEESEEEEC---------TTCEEEEEECCCSCEEEEEEECSH--
T ss_pred eEEeCCCEEEEEEEcCCCcceEEeeEEeCCceeecCeecceEeec---------CCceEEEEEecCCCeEEEEecCCC--
Confidence 67999999998877544445568887641 11223344432 233334467778999999999998
Q ss_pred CCCcCCceEEEEEe
Q 037561 159 FHCREGRMKFMVLP 172 (179)
Q Consensus 159 ~HC~~GqMKlaV~v 172 (179)
.|=..| |+..+.|
T Consensus 703 ~~~~~G-m~g~~~V 715 (1065)
T 2j5w_A 703 DHYTGG-MKQKYTV 715 (1065)
T ss_dssp HHHHTT-CEEEEEE
T ss_pred cccCCC-cEEEEEE
Confidence 788889 8766666
No 75
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=20.62 E-value=65 Score=24.30 Aligned_cols=16 Identities=25% Similarity=0.183 Sum_probs=14.4
Q ss_pred CCEEeCCEEEEEeCCC
Q 037561 84 APFYVNDVLVFKYDPP 99 (179)
Q Consensus 84 ktF~VGDtLvF~Y~~~ 99 (179)
...++||.++|.+...
T Consensus 115 n~L~~GD~cvFeli~~ 130 (146)
T 4i1k_A 115 NNLGEGDVCVFELLRT 130 (146)
T ss_dssp TTCCTTCEEEEEECSS
T ss_pred cCCCCCCEEEEEEecC
Confidence 4799999999999985
No 76
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=20.15 E-value=32 Score=25.37 Aligned_cols=10 Identities=20% Similarity=0.418 Sum_probs=9.2
Q ss_pred CEEeCCEEEE
Q 037561 85 PFYVNDVLVF 94 (179)
Q Consensus 85 tF~VGDtLvF 94 (179)
.+++||.|+|
T Consensus 34 ~i~vGD~I~f 43 (113)
T 1xne_A 34 DIKRGDKIIF 43 (113)
T ss_dssp TCCTTCEEEE
T ss_pred ccCCCCEEEE
Confidence 5899999999
Done!