BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037562
(670 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B8J|A Chain A, Rimp_alpha1a
Length = 528
Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/452 (71%), Positives = 368/452 (81%), Gaps = 4/452 (0%)
Query: 210 LKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFD 269
LKK E LQ+Q ++ ++ KLE LPAM+ GV+SDDN+LQLEATT F LLS +
Sbjct: 48 LKKRREGLQAQAPVPASAATGVD--KKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIE 105
Query: 270 RSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIF 329
RSPPI+EVIQSGVVPRFV+FL R+D+PQLQF+AAWALTNIASGTSENTKVVIDHGAVPIF
Sbjct: 106 RSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF 165
Query: 330 VKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPXXXXXXXXXXXSMLRTATW 389
VKLL S S DVR+Q VWALGNVAGDSP+CRDLVL+ GAL+P SMLR ATW
Sbjct: 166 VKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATW 225
Query: 390 TLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEA 449
TL NFCRGKPQP F Q RPALP LA+LI SNDEEVLTDACWALSYLSDGTNDK+QAVIEA
Sbjct: 226 TLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEA 285
Query: 450 GVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESI 509
GV PRLVELL H S SVL PALRT+ NIV GDD QTQCII+ ALP L +L N ++SI
Sbjct: 286 GVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSI 345
Query: 510 KKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHE 569
KKE W ISNIT GN++QIQAVI++G+IGP+VNLLQ EFD KKEAAWAISNAT G+H+
Sbjct: 346 KKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHD 405
Query: 570 QIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLV 629
QIK+LV EGC+KPLCDLL+C D +IVTVCLEGLENILKVG E + A GD N ++Q++
Sbjct: 406 QIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVG--ETDKTLAAGDVNVFSQMI 463
Query: 630 EEAEGLEKIENLQSHDDNGISEKAVEILETYW 661
+EAEGLEKIENLQSHD+N I EKAV+ILE YW
Sbjct: 464 DEAEGLEKIENLQSHDNNEIYEKAVKILEAYW 495
>pdb|2YNS|A Chain A, Rimp_alpha_b54nls
pdb|2YNS|B Chain B, Rimp_alpha_b54nls
pdb|4B8O|A Chain A, Rimp_alpha_sv40tagnls
pdb|4B8P|A Chain A, Rimp_alpha_a89nls
pdb|4B8P|B Chain B, Rimp_alpha_a89nls
Length = 490
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/447 (70%), Positives = 361/447 (80%), Gaps = 7/447 (1%)
Query: 220 QRSRISTPVLSLNLQSKL-----EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPI 274
+R + +P L + K LPAM+ GV+SDDN+LQLEATT F LLS +RSPPI
Sbjct: 13 ERQHMDSPDLGTDDDDKAMADIGSSLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPI 72
Query: 275 DEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA 334
+EVIQSGVVPRFV+FL R+D+PQLQF+AAWALTNIASGTSENTKVVIDHGAVPIFVKLL
Sbjct: 73 EEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLG 132
Query: 335 SPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPXXXXXXXXXXXSMLRTATWTLFNF 394
S S DVR+Q VWALGNVAGDSP+CRDLVL+ GAL+P SMLR ATWTL NF
Sbjct: 133 SSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNF 192
Query: 395 CRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPR 454
CRGKPQP F Q RPALP LA+LI SNDEEVLTDACWALSYLSDGTNDK+QAVIEAGV PR
Sbjct: 193 CRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPR 252
Query: 455 LVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVS 514
LVELL H S SVL PALRT+ NIV GDD QTQCII+ ALP L +L N ++SIKKE
Sbjct: 253 LVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEAC 312
Query: 515 WIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHL 574
W ISNIT GN++QIQAVI++G+IGP+VNLLQ EFD KKEAAWAISNAT G+H+QIK+L
Sbjct: 313 WTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYL 372
Query: 575 VREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEG 634
V EGC+KPLCDLL+C D +IVTVCLEGLENILKVG E + A GD N ++Q+++EAEG
Sbjct: 373 VSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVG--ETDKTLAAGDVNVFSQMIDEAEG 430
Query: 635 LEKIENLQSHDDNGISEKAVEILETYW 661
LEKIENLQSHD+N I EKAV+ILE YW
Sbjct: 431 LEKIENLQSHDNNEIYEKAVKILEAYW 457
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 426 bits (1095), Expect = e-119, Method: Compositional matrix adjust.
Identities = 234/427 (54%), Positives = 297/427 (69%), Gaps = 11/427 (2%)
Query: 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQ-L 298
LP M + SDD QL AT F +LS + PPID VIQ+GVVPR VEF MR++ P+ L
Sbjct: 89 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 147
Query: 299 QFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC 358
Q +AAWALTNIASGTS TKVV+D AVP+F++LL + SV+V++Q +WALGNVAGDS
Sbjct: 148 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 207
Query: 359 RDLVLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCRG-KPQPPFNQVRPALPVLAQLI 417
RD VL A+ P S++RTATWTL N CRG KPQP ++ V ALP LA+LI
Sbjct: 208 RDYVLQCNAMEP-ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 266
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
S D E L DACWA+SYLSDG + +QAVI+ + RLVELL H S+ V TPALR + NI
Sbjct: 267 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
V G+D QTQ +IN G LP L +L+ + +E+IKKE W ISNIT GN EQIQAVID+ LI
Sbjct: 327 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 385
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQ--IKHLVREGCVKPLCDLLLCADPKIV 595
P+V LL+ E+ TKKEA WAISNA+ G I++LV +GC+KPLCDLL AD +I+
Sbjct: 386 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 445
Query: 596 TVCLEGLENILKVGVAEMNTGTAVG-DFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAV 654
V L+ LENILK+G A+ A G + N+ A +E+A G+EKI N Q ++++ I EKA
Sbjct: 446 EVTLDALENILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 502
Query: 655 EILETYW 661
+I+ETY+
Sbjct: 503 KIIETYF 509
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 426 bits (1094), Expect = e-119, Method: Compositional matrix adjust.
Identities = 234/428 (54%), Positives = 297/428 (69%), Gaps = 11/428 (2%)
Query: 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQ-L 298
LP M + SDD QL AT F +LS + PPID VIQ+GVVPR VEF MR++ P+ L
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 59
Query: 299 QFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC 358
Q +AAWALTNIASGTS TKVV+D AVP+F++LL + SV+V++Q +WALGNVAGDS
Sbjct: 60 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 359 RDLVLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCRG-KPQPPFNQVRPALPVLAQLI 417
RD VL A+ P S++RTATWTL N CRG KPQP ++ V ALP LA+LI
Sbjct: 120 RDYVLQCNAMEP-ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
S D E L DACWA+SYLSDG + +QAVI+ + RLVELL H S+ V TPALR + NI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
V G+D QTQ +IN G LP L +L+ + +E+IKKE W ISNIT GN EQIQAVID+ LI
Sbjct: 239 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 297
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQ--IKHLVREGCVKPLCDLLLCADPKIV 595
P+V LL+ E+ TKKEA WAISNA+ G I++LV +GC+KPLCDLL AD +I+
Sbjct: 298 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 357
Query: 596 TVCLEGLENILKVGVAEMNTGTAVG-DFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAV 654
V L+ LENILK+G A+ A G + N+ A +E+A G+EKI N Q ++++ I EKA
Sbjct: 358 EVTLDALENILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 414
Query: 655 EILETYWS 662
+I+ETY+
Sbjct: 415 KIIETYFG 422
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 424 bits (1091), Expect = e-119, Method: Compositional matrix adjust.
Identities = 233/428 (54%), Positives = 297/428 (69%), Gaps = 11/428 (2%)
Query: 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQ-L 298
LP M + SDD QL AT F +LS + PPID VIQ+GVVPR VEF MR++ P+ L
Sbjct: 1 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 59
Query: 299 QFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC 358
Q +AAWALTNIASGTS TKVV+D AVP+F++LL + SV+V++Q +WALGNVAGDS
Sbjct: 60 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 359 RDLVLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCRG-KPQPPFNQVRPALPVLAQLI 417
RD VL A+ P S++RTATWTL N CRG KPQP ++ V ALP LA+LI
Sbjct: 120 RDYVLQCNAMEP-ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
S D E L DACWA+SYLSDG + +QAVI+ + RLVELL H S+ V TPALR + NI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
V G+D QTQ +IN G LP L +L+ + +E+IKKE W ISNIT GN EQIQAVID+ LI
Sbjct: 239 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 297
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQ--IKHLVREGCVKPLCDLLLCADPKIV 595
P+V LL+ E+ TKKEA WAISNA+ G I++LV +GC+KPLCDLL AD +I+
Sbjct: 298 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 357
Query: 596 TVCLEGLENILKVGVAEMNTGTAVG-DFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAV 654
V L+ LENI+K+G A+ A G + N+ A +E+A G+EKI N Q ++++ I EKA
Sbjct: 358 EVTLDALENIIKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 414
Query: 655 EILETYWS 662
+I+ETY+
Sbjct: 415 KIIETYFG 422
>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
pdb|3TJ3|B Chain B, Structure Of Importin A5 Bound To The N-Terminus Of Nup50
Length = 447
Score = 424 bits (1089), Expect = e-119, Method: Compositional matrix adjust.
Identities = 235/438 (53%), Positives = 296/438 (67%), Gaps = 13/438 (2%)
Query: 235 SKLEILPA------MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQS-GVVPRFV 287
S +E+ P M++ ++S QL AT F LLS + +PPIDEVI + GVV RFV
Sbjct: 8 SNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFV 67
Query: 288 EFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWA 347
EFL R++ LQF++AW LTNIASG S T++VI GAVPIF++LL+S DV++Q VWA
Sbjct: 68 EFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWA 127
Query: 348 LGNVAGDSPRCRDLVLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCRGKPQPP-FNQV 406
LGN+AGDS CRD VL L P +M R A W L N CRGK PP F +V
Sbjct: 128 LGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV 187
Query: 407 RPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSV 466
P L VL+ L+ +D +VL DACWALSYLSDG NDK+QAVI+AGV RLVELL H+ V
Sbjct: 188 SPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKV 247
Query: 467 LTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNRE 526
++PALR + NIV GDD QTQ I+NC AL L L+ + +ESIKKE W ISNIT GNR
Sbjct: 248 VSPALRAVGNIVTGDDIQTQVILNCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRA 306
Query: 527 QIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDL 586
QIQ VID+ + ++++LQ EF T+KEAAWAI+NAT G+ EQIK+LV GC+KPLCDL
Sbjct: 307 QIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDL 366
Query: 587 LLCADPKIVTVCLEGLENILKVGVAEMN-TGTAVGDFNQYAQLVEEAEGLEKIENLQSHD 645
L D KIV V L GLENIL++G E GT + N Y L+EEA GL+KIE LQSH+
Sbjct: 367 LTVMDSKIVQVALNGLENILRLGEQEAKRNGTGI---NPYCALIEEAYGLDKIEFLQSHE 423
Query: 646 DNGISEKAVEILETYWSS 663
+ I +KA +++E Y+ +
Sbjct: 424 NQEIYQKAFDLIEHYFGT 441
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 423 bits (1088), Expect = e-118, Method: Compositional matrix adjust.
Identities = 234/427 (54%), Positives = 296/427 (69%), Gaps = 11/427 (2%)
Query: 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQ-L 298
LP M + SDD QL AT F +LS + PPID VIQ+GVVPR VEF MR++ P+ L
Sbjct: 3 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 61
Query: 299 QFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC 358
Q +AAWALTNIASGTS TKVV+D AVP+F++LL + SV+V++Q +WALGNVAGDS
Sbjct: 62 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 359 RDLVLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCRG-KPQPPFNQVRPALPVLAQLI 417
RD VL A+ P S++RTATWTL N CRG KPQP ++ V ALP LA+LI
Sbjct: 122 RDYVLQCNAMEP-ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 180
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
S D E L DACWA+SYLSDG + +QAVI+ + RLVELL H S+ V TPALR + NI
Sbjct: 181 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 240
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
V G+D QTQ +IN G LP L +L+ + +E+IKKE W ISNIT GN EQIQAVID+ LI
Sbjct: 241 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 299
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQ--IKHLVREGCVKPLCDLLLCADPKIV 595
P+V LL+ E TKKEA WAISNA+ G I++LV +GC+KPLCDLL AD +I+
Sbjct: 300 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 359
Query: 596 TVCLEGLENILKVGVAEMNTGTAVG-DFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAV 654
V L+ LENILK+G A+ A G + N+ A +E+A G+EKI N Q ++++ I EKA
Sbjct: 360 EVTLDALENILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 416
Query: 655 EILETYW 661
+I+ETY+
Sbjct: 417 KIIETYF 423
>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
pdb|2JDQ|B Chain B, C-Terminal Domain Of Influenza A Virus Polymerase Pb2
Subunit In Complex With Human Importin Alpha5
Length = 450
Score = 423 bits (1088), Expect = e-118, Method: Compositional matrix adjust.
Identities = 232/425 (54%), Positives = 291/425 (68%), Gaps = 7/425 (1%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQS-GVVPRFVEFLMRQDYPQLQFK 301
M++ ++S QL AT F LLS + +PPIDEVI + GVV RFVEFL R++ LQF+
Sbjct: 25 MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 302 AAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDL 361
+AW LTNIASG S T++VI GAVPIF++LL+S DV++Q VWALGN+AGDS CRD
Sbjct: 85 SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 362 VLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCRGKPQPP-FNQVRPALPVLAQLIRSN 420
VL L P +M R A W L N CRGK PP F +V P L VL+ L+ +
Sbjct: 145 VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVS 204
Query: 421 DEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKG 480
D +VL DACWALSYLSDG NDK+QAVI+AGV RLVELL H+ V++PALR + NIV G
Sbjct: 205 DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG 264
Query: 481 DDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPI 540
DD QTQ I+NC AL L L+ + +ESIKKE W ISNIT GNR QIQ VID+ + +
Sbjct: 265 DDIQTQVILNCSAL-QSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323
Query: 541 VNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLE 600
+++LQ EF T+KEAAWAI+NAT G+ EQIK+LV GC+KPLCDLL D KIV V L
Sbjct: 324 ISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALN 383
Query: 601 GLENILKVGVAEMN-TGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILET 659
GLENIL++G E GT + N Y L+EEA GL+KIE LQSH++ I +KA +++E
Sbjct: 384 GLENILRLGEQEAKRNGTGI---NPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEH 440
Query: 660 YWSSR 664
Y+ +
Sbjct: 441 YFGTE 445
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 423 bits (1087), Expect = e-118, Method: Compositional matrix adjust.
Identities = 234/428 (54%), Positives = 296/428 (69%), Gaps = 11/428 (2%)
Query: 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQ-L 298
LP M + SDD QL AT F +LS + PPID VIQ+GVVPR VEF MR++ P+ L
Sbjct: 3 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 61
Query: 299 QFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC 358
Q +AAWALTNIASGTS TKVV+D AVP+F++LL + SV+V++Q +WALGNVAGDS
Sbjct: 62 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 359 RDLVLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCRG-KPQPPFNQVRPALPVLAQLI 417
RD VL A+ P S++RTATWTL N CRG KPQP ++ V ALP LA+LI
Sbjct: 122 RDYVLQCNAMEP-ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 180
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
S D E L DACWA+SYLSDG + +QAVI+ + RLVELL H S+ V TPALR + NI
Sbjct: 181 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 240
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
V G+D QTQ +IN G LP L +L+ + +E+IKKE W ISNIT GN EQIQAVID+ LI
Sbjct: 241 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 299
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQ--IKHLVREGCVKPLCDLLLCADPKIV 595
P+V LL+ E TKKEA WAISNA+ G I++LV +GC+KPLCDLL AD +I+
Sbjct: 300 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 359
Query: 596 TVCLEGLENILKVGVAEMNTGTAVG-DFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAV 654
V L+ LENILK+G A+ A G + N+ A +E+A G+EKI N Q ++++ I EKA
Sbjct: 360 EVTLDALENILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 416
Query: 655 EILETYWS 662
+I+ETY+
Sbjct: 417 KIIETYFG 424
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 423 bits (1087), Expect = e-118, Method: Compositional matrix adjust.
Identities = 234/428 (54%), Positives = 296/428 (69%), Gaps = 11/428 (2%)
Query: 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQ-L 298
LP M + SDD QL AT F +LS + PPID VIQ+GVVPR VEF MR++ P+ L
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 60
Query: 299 QFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC 358
Q +AAWALTNIASGTS TKVV+D AVP+F++LL + SV+V++Q +WALGNVAGDS
Sbjct: 61 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 359 RDLVLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCRG-KPQPPFNQVRPALPVLAQLI 417
RD VL A+ P S++RTATWTL N CRG KPQP ++ V ALP LA+LI
Sbjct: 121 RDYVLQCNAMEP-ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
S D E L DACWA+SYLSDG + +QAVI+ + RLVELL H S+ V TPALR + NI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
V G+D QTQ +IN G LP L +L+ + +E+IKKE W ISNIT GN EQIQAVID+ LI
Sbjct: 240 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 298
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQ--IKHLVREGCVKPLCDLLLCADPKIV 595
P+V LL+ E TKKEA WAISNA+ G I++LV +GC+KPLCDLL AD +I+
Sbjct: 299 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 358
Query: 596 TVCLEGLENILKVGVAEMNTGTAVG-DFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAV 654
V L+ LENILK+G A+ A G + N+ A +E+A G+EKI N Q ++++ I EKA
Sbjct: 359 EVTLDALENILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 415
Query: 655 EILETYWS 662
+I+ETY+
Sbjct: 416 KIIETYFG 423
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 422 bits (1085), Expect = e-118, Method: Compositional matrix adjust.
Identities = 234/428 (54%), Positives = 296/428 (69%), Gaps = 11/428 (2%)
Query: 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQ-L 298
LP M + SDD QL AT F +LS + PPID VIQ+GVVPR VEF MR++ P+ L
Sbjct: 2 LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 60
Query: 299 QFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC 358
Q +AAWALTNIASGTS TKVV+D AVP+F++LL + SV+V++Q +WALGNVAGDS
Sbjct: 61 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 359 RDLVLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCRG-KPQPPFNQVRPALPVLAQLI 417
RD VL A+ P S++RTATWTL N CRG KPQP ++ V ALP LA+LI
Sbjct: 121 RDYVLQCNAMEP-ILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
S D E L DACWA+SYLSDG + +QAVI+ + RLVELL H S+ V TPALR + NI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
V G+D QTQ +IN G LP L +L+ + +E+IKKE W ISNIT GN EQIQAVID+ LI
Sbjct: 240 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 298
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQ--IKHLVREGCVKPLCDLLLCADPKIV 595
P+V LL+ E TKKEA WAISNA+ G I++LV +GC+KPLCDLL AD +I+
Sbjct: 299 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 358
Query: 596 TVCLEGLENILKVGVAEMNTGTAVG-DFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAV 654
V L+ LENILK+G A+ A G + N+ A +E+A G+EKI N Q ++++ I EKA
Sbjct: 359 EVTLDALENILKMGEADKE---ARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAY 415
Query: 655 EILETYWS 662
+I+ETY+
Sbjct: 416 KIIETYFG 423
>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex
Length = 424
Score = 377 bits (967), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/425 (44%), Positives = 277/425 (65%), Gaps = 13/425 (3%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKA 302
+V G+ S++ QL+AT LLS ++ PPID +I++G++P+FV FL + D +QF++
Sbjct: 7 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 303 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362
AWALTNIASGTSE TK V+D GA+P F+ LLASP + +Q VWALGN+AGD RDLV
Sbjct: 67 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 363 LSQGALIPXXXXXXXXXXXSM----LRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLI 417
+ GA+ P ++ LR TWTL N CR K P PP + V LP L +L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
ND EVL D+CWA+SYL+DG N++++ V++ GV P+LV+LLG + ++TPALR I NI
Sbjct: 187 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 246
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
V G D QTQ +I+ GAL F +L N + +I+KE +W +SNIT G ++QIQ V++ GL+
Sbjct: 247 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 305
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597
+V +L +F T+KEAAWAI+N T GT EQI +LV G ++PL +LL D KI+ V
Sbjct: 306 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 365
Query: 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
L+ + NI + +G+ + + ++EE GL+KIE LQ H++ + + ++ ++
Sbjct: 366 ILDAISNIFQ-------AAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 418
Query: 658 ETYWS 662
E Y+S
Sbjct: 419 EKYFS 423
>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical
Plscr1-Nls
Length = 428
Score = 377 bits (967), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/425 (44%), Positives = 277/425 (65%), Gaps = 13/425 (3%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKA 302
+V G+ S++ QL+AT LLS ++ PPID +I++G++P+FV FL + D +QF++
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 303 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362
AWALTNIASGTSE TK V+D GA+P F+ LLASP + +Q VWALGN+AGD RDLV
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 363 LSQGALIPXXXXXXXXXXXSM----LRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLI 417
+ GA+ P ++ LR TWTL N CR K P PP + V LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
ND EVL D+CWA+SYL+DG N++++ V++ GV P+LV+LLG + ++TPALR I NI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
V G D QTQ +I+ GAL F +L N + +I+KE +W +SNIT G ++QIQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597
+V +L +F T+KEAAWAI+N T GT EQI +LV G ++PL +LL D KI+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
L+ + NI + +G+ + + ++EE GL+KIE LQ H++ + + ++ ++
Sbjct: 371 ILDAISNIFQ-------AAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 423
Query: 658 ETYWS 662
E Y+S
Sbjct: 424 EKYFS 428
>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex
Length = 427
Score = 377 bits (967), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/425 (44%), Positives = 277/425 (65%), Gaps = 13/425 (3%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKA 302
+V G+ S++ QL+AT LLS ++ PPID +I++G++P+FV FL + D +QF++
Sbjct: 11 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 303 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362
AWALTNIASGTSE TK V+D GA+P F+ LLASP + +Q VWALGN+AGD RDLV
Sbjct: 71 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 363 LSQGALIPXXXXXXXXXXXSM----LRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLI 417
+ GA+ P ++ LR TWTL N CR K P PP + V LP L +L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
ND EVL D+CWA+SYL+DG N++++ V++ GV P+LV+LLG + ++TPALR I NI
Sbjct: 191 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 250
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
V G D QTQ +I+ GAL F +L N + +I+KE +W +SNIT G ++QIQ V++ GL+
Sbjct: 251 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 309
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597
+V +L +F T+KEAAWAI+N T GT EQI +LV G ++PL +LL D KI+ V
Sbjct: 310 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 369
Query: 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
L+ + NI + +G+ + + ++EE GL+KIE LQ H++ + + ++ ++
Sbjct: 370 ILDAISNIFQ-------AAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 422
Query: 658 ETYWS 662
E Y+S
Sbjct: 423 EKYFS 427
>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide
Complex
pdb|1EJY|I Chain I, Mouse Importin Alpha-Nucleoplasmin Nls Peptide Complex
pdb|1IQ1|C Chain C, Crystal Structure Of The Importin-Alpha(44-54)-Importin-
Alpha(70-529) Complex
pdb|1PJM|B Chain B, Mouse Importin Alpha-Bipartite Nls From Human
Retinoblastoma Protein Complex
pdb|1PJN|B Chain B, Mouse Importin Alpha-Bipartite Nls N1n2 From Xenopus
Laevis Phosphoprotein Complex
pdb|3KND|A Chain A, Tpx2:importin-Alpha Complex
pdb|3Q5U|A Chain A, A Minimal Nls From Human Scramblase 4 Complexed With
Importin Alpha
Length = 460
Score = 376 bits (966), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/425 (44%), Positives = 277/425 (65%), Gaps = 13/425 (3%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKA 302
+V G+ S++ QL+AT LLS ++ PPID +I++G++P+FV FL + D +QF++
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 303 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362
AWALTNIASGTSE TK V+D GA+P F+ LLASP + +Q VWALGN+AGD RDLV
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 363 LSQGALIPXXXXXXXXXXXSM----LRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLI 417
+ GA+ P ++ LR TWTL N CR K P PP + V LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
ND EVL D+CWA+SYL+DG N++++ V++ GV P+LV+LLG + ++TPALR I NI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
V G D QTQ +I+ GAL F +L N + +I+KE +W +SNIT G ++QIQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597
+V +L +F T+KEAAWAI+N T GT EQI +LV G ++PL +LL D KI+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
L+ + NI + +G+ + + ++EE GL+KIE LQ H++ + + ++ ++
Sbjct: 371 ILDAISNIFQA-------AEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 423
Query: 658 ETYWS 662
E Y+S
Sbjct: 424 EKYFS 428
>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide
Complex
pdb|1Q1T|C Chain C, Mouse Importin Alpha: Non-Phosphorylated Sv40 Cn Peptide
Complex
Length = 466
Score = 376 bits (965), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/425 (44%), Positives = 277/425 (65%), Gaps = 13/425 (3%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKA 302
+V G+ S++ QL+AT LLS ++ PPID +I++G++P+FV FL + D +QF++
Sbjct: 18 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 77
Query: 303 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362
AWALTNIASGTSE TK V+D GA+P F+ LLASP + +Q VWALGN+AGD RDLV
Sbjct: 78 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137
Query: 363 LSQGALIPXXXXXXXXXXXSM----LRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLI 417
+ GA+ P ++ LR TWTL N CR K P PP + V LP L +L+
Sbjct: 138 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 197
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
ND EVL D+CWA+SYL+DG N++++ V++ GV P+LV+LLG + ++TPALR I NI
Sbjct: 198 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 257
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
V G D QTQ +I+ GAL F +L N + +I+KE +W +SNIT G ++QIQ V++ GL+
Sbjct: 258 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 316
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597
+V +L +F T+KEAAWAI+N T GT EQI +LV G ++PL +LL D KI+ V
Sbjct: 317 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 376
Query: 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
L+ + NI + +G+ + + ++EE GL+KIE LQ H++ + + ++ ++
Sbjct: 377 ILDAISNIFQA-------AEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 429
Query: 658 ETYWS 662
E Y+S
Sbjct: 430 EKYFS 434
>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex
pdb|3UKX|B Chain B, Mouse Importin Alpha: Bimax2 Peptide Complex
pdb|3UKY|B Chain B, Mouse Importin Alpha: Yeast Cbp80 Cnls Complex
pdb|3UKZ|B Chain B, Mouse Importin Alpha: Mouse Cbp80 Cnls Complex
pdb|3UL0|B Chain B, Mouse Importin Alpha: Mouse Cbp80y8d Cnls Complex
pdb|3UL1|B Chain B, Mouse Importin Alpha: Nucleoplasmin Cnls Peptide Complex
Length = 510
Score = 376 bits (965), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/425 (44%), Positives = 277/425 (65%), Gaps = 13/425 (3%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKA 302
+V G+ S++ QL+AT LLS ++ PPID +I++G++P+FV FL + D +QF++
Sbjct: 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 303 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362
AWALTNIASGTSE TK V+D GA+P F+ LLASP + +Q VWALGN+AGD RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 363 LSQGALIPXXXXXXXXXXXSM----LRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLI 417
+ GA+ P ++ LR TWTL N CR K P PP + V LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
ND EVL D+CWA+SYL+DG N++++ V++ GV P+LV+LLG + ++TPALR I NI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
V G D QTQ +I+ GAL F +L N + +I+KE +W +SNIT G ++QIQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597
+V +L +F T+KEAAWAI+N T GT EQI +LV G ++PL +LL D KI+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
L+ + NI + +G+ + + ++EE GL+KIE LQ H++ + + ++ ++
Sbjct: 421 ILDAISNIFQA-------AEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473
Query: 658 ETYWS 662
E Y+S
Sbjct: 474 EKYFS 478
>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex
Length = 509
Score = 376 bits (965), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/425 (44%), Positives = 277/425 (65%), Gaps = 13/425 (3%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKA 302
+V G+ S++ QL+AT LLS ++ PPID +I++G++P+FV FL + D +QF++
Sbjct: 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 303 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362
AWALTNIASGTSE TK V+D GA+P F+ LLASP + +Q VWALGN+AGD RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 363 LSQGALIPXXXXXXXXXXXSM----LRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLI 417
+ GA+ P ++ LR TWTL N CR K P PP + V LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
ND EVL D+CWA+SYL+DG N++++ V++ GV P+LV+LLG + ++TPALR I NI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
V G D QTQ +I+ GAL F +L N + +I+KE +W +SNIT G ++QIQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597
+V +L +F T+KEAAWAI+N T GT EQI +LV G ++PL +LL D KI+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
L+ + NI + +G+ + + ++EE GL+KIE LQ H++ + + ++ ++
Sbjct: 421 ILDAISNIFQA-------AEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473
Query: 658 ETYWS 662
E Y+S
Sbjct: 474 EKYFS 478
>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex
pdb|3RZX|A Chain A, Mouse Importin Alpha-Ku70 Nls Peptide Complex
pdb|3OQS|A Chain A, Crystal Structure Of Importin-Alpha Bound To A Clic4 Nls
Peptide
pdb|3UVU|A Chain A, Structural Basis Of Nuclear Import Of Flap Endonuclease 1
(fen1)
Length = 510
Score = 375 bits (964), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/425 (44%), Positives = 277/425 (65%), Gaps = 13/425 (3%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKA 302
+V G+ S++ QL+AT LLS ++ PPID +I++G++P+FV FL + D +QF++
Sbjct: 62 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 303 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362
AWALTNIASGTSE TK V+D GA+P F+ LLASP + +Q VWALGN+AGD RDLV
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 363 LSQGALIPXXXXXXXXXXXSM----LRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLI 417
+ GA+ P ++ LR TWTL N CR K P PP + V LP L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
ND EVL D+CWA+SYL+DG N++++ V++ GV P+LV+LLG + ++TPALR I NI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
V G D QTQ +I+ GAL F +L N + +I+KE +W +SNIT G ++QIQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597
+V +L +F T+KEAAWAI+N T GT EQI +LV G ++PL +LL D KI+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
L+ + NI + +G+ + + ++EE GL+KIE LQ H++ + + ++ ++
Sbjct: 421 ILDAISNIFQA-------AEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473
Query: 658 ETYWS 662
E Y+S
Sbjct: 474 EKYFS 478
>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls
Length = 496
Score = 375 bits (964), Expect = e-104, Method: Compositional matrix adjust.
Identities = 191/425 (44%), Positives = 277/425 (65%), Gaps = 13/425 (3%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKA 302
+V G+ S++ QL+AT LLS ++ PPID +I++G++P+FV FL + D +QF++
Sbjct: 48 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 107
Query: 303 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362
AWALTNIASGTSE TK V+D GA+P F+ LLASP + +Q VWALGN+AGD RDLV
Sbjct: 108 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 167
Query: 363 LSQGALIPXXXXXXXXXXXSM----LRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLI 417
+ GA+ P ++ LR TWTL N CR K P PP + V LP L +L+
Sbjct: 168 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 227
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
ND EVL D+CWA+SYL+DG N++++ V++ GV P+LV+LLG + ++TPALR I NI
Sbjct: 228 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 287
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
V G D QTQ +I+ GAL F +L N + +I+KE +W +SNIT G ++QIQ V++ GL+
Sbjct: 288 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 346
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597
+V +L +F T+KEAAWAI+N T GT EQI +LV G ++PL +LL D KI+ V
Sbjct: 347 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 406
Query: 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
L+ + NI + +G+ + + ++EE GL+KIE LQ H++ + + ++ ++
Sbjct: 407 ILDAISNIFQA-------AEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 459
Query: 658 ETYWS 662
E Y+S
Sbjct: 460 EKYFS 464
>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With
Importin-Alpha
Length = 422
Score = 375 bits (963), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/424 (44%), Positives = 276/424 (65%), Gaps = 13/424 (3%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKA 302
+V G+ S++ QL+AT LLS ++ PPID +I++G++P+FV FL + D +QF++
Sbjct: 7 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 303 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362
AWALTNIASGTSE TK V+D GA+P F+ LLASP + +Q VWALGN+AGD RDLV
Sbjct: 67 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 363 LSQGALIPXXXXXXXXXXXSM----LRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLI 417
+ GA+ P ++ LR TWTL N CR K P PP + V LP L +L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
ND EVL D+CWA+SYL+DG N++++ V++ GV P+LV+LLG + ++TPALR I NI
Sbjct: 187 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 246
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
V G D QTQ +I+ GAL F +L N + +I+KE +W +SNIT G ++QIQ V++ GL+
Sbjct: 247 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 305
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597
+V +L +F T+KEAAWAI+N T GT EQI +LV G ++PL +LL D KI+ V
Sbjct: 306 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 365
Query: 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
L+ + NI + +G+ + + ++EE GL+KIE LQ H++ + + ++ ++
Sbjct: 366 ILDAISNIFQ-------AAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 418
Query: 658 ETYW 661
E Y+
Sbjct: 419 EKYF 422
>pdb|1IAL|A Chain A, Importin Alpha, Mouse
Length = 453
Score = 375 bits (963), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/424 (44%), Positives = 276/424 (65%), Gaps = 13/424 (3%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKA 302
+V G+ S++ QL+AT LLS ++ PPID +I++G++P+FV FL + D +QF++
Sbjct: 38 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 97
Query: 303 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362
AWALTNIASGTSE TK V+D GA+P F+ LLASP + +Q VWALGN+AGD RDLV
Sbjct: 98 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 157
Query: 363 LSQGALIPXXXXXXXXXXXSM----LRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLI 417
+ GA+ P ++ LR TWTL N CR K P PP + V LP L +L+
Sbjct: 158 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 217
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
ND EVL D+CWA+SYL+DG N++++ V++ GV P+LV+LLG + ++TPALR I NI
Sbjct: 218 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 277
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
V G D QTQ +I+ GAL F +L N + +I+KE +W +SNIT G ++QIQ V++ GL+
Sbjct: 278 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 336
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597
+V +L +F T+KEAAWAI+N T GT EQI +LV G ++PL +LL D KI+ V
Sbjct: 337 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 396
Query: 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
L+ + NI + +G+ + + ++EE GL+KIE LQ H++ + + ++ ++
Sbjct: 397 ILDAISNIFQA-------AEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 449
Query: 658 ETYW 661
E Y+
Sbjct: 450 EKYF 453
>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine
Encephalitis Virus Capsid Protein Nls And Importin Alpha
Length = 426
Score = 375 bits (963), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/424 (44%), Positives = 276/424 (65%), Gaps = 13/424 (3%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKA 302
+V G+ S++ QL+AT LLS ++ PPID +I++G++P+FV FL + D +QF++
Sbjct: 11 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 303 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362
AWALTNIASGTSE TK V+D GA+P F+ LLASP + +Q VWALGN+AGD RDLV
Sbjct: 71 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 363 LSQGALIPXXXXXXXXXXXSM----LRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLI 417
+ GA+ P ++ LR TWTL N CR K P PP + V LP L +L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
ND EVL D+CWA+SYL+DG N++++ V++ GV P+LV+LLG + ++TPALR I NI
Sbjct: 191 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 250
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
V G D QTQ +I+ GAL F +L N + +I+KE +W +SNIT G ++QIQ V++ GL+
Sbjct: 251 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 309
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597
+V +L +F T+KEAAWAI+N T GT EQI +LV G ++PL +LL D KI+ V
Sbjct: 310 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 369
Query: 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
L+ + NI + +G+ + + ++EE GL+KIE LQ H++ + + ++ ++
Sbjct: 370 ILDAISNIFQ-------AAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 422
Query: 658 ETYW 661
E Y+
Sbjct: 423 EKYF 426
>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex
Length = 427
Score = 375 bits (962), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/424 (44%), Positives = 276/424 (65%), Gaps = 13/424 (3%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKA 302
+V G+ S++ QL+AT LLS ++ PPID +I++G++P+FV FL + D +QF++
Sbjct: 12 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 303 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362
AWALTNIASGTSE TK V+D GA+P F+ LLASP + +Q VWALGN+AGD RDLV
Sbjct: 72 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 363 LSQGALIPXXXXXXXXXXXSM----LRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLI 417
+ GA+ P ++ LR TWTL N CR K P PP + V LP L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
ND EVL D+CWA+SYL+DG N++++ V++ GV P+LV+LLG + ++TPALR I NI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
V G D QTQ +I+ GAL F +L N + +I+KE +W +SNIT G ++QIQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597
+V +L +F T+KEAAWAI+N T GT EQI +LV G ++PL +LL D KI+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
L+ + NI + +G+ + + ++EE GL+KIE LQ H++ + + ++ ++
Sbjct: 371 ILDAISNIFQ-------AAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 423
Query: 658 ETYW 661
E Y+
Sbjct: 424 EKYF 427
>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls
Length = 461
Score = 374 bits (961), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/424 (44%), Positives = 276/424 (65%), Gaps = 13/424 (3%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKA 302
+V G+ S++ QL+AT LLS ++ PPID +I++G++P+FV FL + D +QF++
Sbjct: 46 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 105
Query: 303 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362
AWALTNIASGTSE TK V+D GA+P F+ LLASP + +Q VWALGN+AGD RDLV
Sbjct: 106 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 165
Query: 363 LSQGALIPXXXXXXXXXXXSM----LRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLI 417
+ GA+ P ++ LR TWTL N CR K P PP + V LP L +L+
Sbjct: 166 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 225
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
ND EVL D+CWA+SYL+DG N++++ V++ GV P+LV+LLG + ++TPALR I NI
Sbjct: 226 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 285
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
V G D QTQ +I+ GAL F +L N + +I+KE +W +SNIT G ++QIQ V++ GL+
Sbjct: 286 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 344
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597
+V +L +F T+KEAAWAI+N T GT EQI +LV G ++PL +LL D KI+ V
Sbjct: 345 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 404
Query: 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
L+ + NI + +G+ + + ++EE GL+KIE LQ H++ + + ++ ++
Sbjct: 405 ILDAISNIFQA-------AEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 457
Query: 658 ETYW 661
E Y+
Sbjct: 458 EKYF 461
>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 467
Score = 374 bits (959), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/425 (44%), Positives = 275/425 (64%), Gaps = 13/425 (3%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKA 302
+V G+ S + QL+AT LLS ++ PPID +I++G++P+FV FL R D +QF++
Sbjct: 13 IVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFES 72
Query: 303 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362
AWALTNIASGTSE TK V+D GA+P F+ LLASP + +Q VWALGN+AGD RDLV
Sbjct: 73 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLV 132
Query: 363 LSQGALIPXXXXXXXXXXXSM----LRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLI 417
+ GA+ P S+ LR TWTL N CR K P PP + V LP L +L+
Sbjct: 133 IKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLL 192
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
+D EVL D CWA+SYL+DG N+++ V++ GV P+LV+LLG S ++TPALR I NI
Sbjct: 193 HHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNI 252
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
V G D QTQ +I+ GAL F +L N + +I+KE +W +SNIT G ++QIQ V++ GL+
Sbjct: 253 VTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 311
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597
+V++L +F T+KEA WA++N T GT EQI +LV G ++PL +LL D KI+ V
Sbjct: 312 PFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILV 371
Query: 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
L+ + NI + +G+ + + ++EE GL+KIE LQ+H++ + + ++ ++
Sbjct: 372 ILDAISNIFQ-------AAEKLGETEKLSIMIEECGGLDKIEALQNHENESVYKASLSLI 424
Query: 658 ETYWS 662
E Y+S
Sbjct: 425 EKYFS 429
>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN
ALPHA2
Length = 529
Score = 371 bits (953), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/425 (44%), Positives = 275/425 (64%), Gaps = 13/425 (3%)
Query: 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKA 302
+V G+ S++ QL+AT LLS ++ PPID +I++G++P+FV FL + D +QF++
Sbjct: 81 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 140
Query: 303 AWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362
AWALTNIASGTSE TK V+D GA+P F+ LLASP + +Q VWALGN+AG RDLV
Sbjct: 141 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLV 200
Query: 363 LSQGALIPXXXXXXXXXXXSM----LRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLI 417
+ GA+ P ++ LR TWTL N CR K P PP + V LP L +L+
Sbjct: 201 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 260
Query: 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477
ND EVL D+CWA+SYL+DG N++++ V++ GV P+LV+LLG + ++TPALR I NI
Sbjct: 261 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320
Query: 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537
V G D QTQ +I+ GAL F +L N + +I+KE +W +SNIT G ++QIQ V++ GL+
Sbjct: 321 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 379
Query: 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597
+V +L +F T+K AAWAI+N T GT EQI +LV G ++PL +LL D KI+ V
Sbjct: 380 PFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 439
Query: 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657
L+ + NI + +G+ + + ++EE GL+KIE LQ H++ + + ++ ++
Sbjct: 440 ILDAISNIFQA-------AEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 492
Query: 658 ETYWS 662
E Y+S
Sbjct: 493 EKYFS 497
>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein
pdb|4DB8|B Chain B, Designed Armadillo-Repeat Protein
pdb|4DB8|C Chain C, Designed Armadillo-Repeat Protein
pdb|4DB8|D Chain D, Designed Armadillo-Repeat Protein
Length = 252
Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/254 (37%), Positives = 138/254 (54%), Gaps = 17/254 (6%)
Query: 410 LPVLAQLIRSNDEEVLTDACWALSY-LSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLT 468
LP + Q + S+D + A S LSDG N+++QAVI+AG P LV+LL + +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 469 PALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQI 528
AL + NI G + Q Q +I+ GALP + +L +E+ I +E W +SNI G EQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQI 131
Query: 529 QAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLL 588
QAVID+G + +V LL + +EA WA+SN G +EQI+ ++ G + L LL
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQAVIDAGALPALVQLLS 190
Query: 589 CADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNG 648
+ +I+ L L NI G N+ Q V+EA LEK+E LQSH++
Sbjct: 191 SPNEQILQEALWALSNIASGG-------------NEQKQAVKEAGALEKLEQLQSHENEK 237
Query: 649 ISEKAVEILETYWS 662
I ++A E LE S
Sbjct: 238 IQKEAQEALEKLQS 251
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 79/198 (39%), Positives = 115/198 (58%), Gaps = 4/198 (2%)
Query: 409 ALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLT 468
ALP L QL+ S +E++L +A WALS ++ G N+++QAVI+AG P LV+LL + +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 469 PALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQI 528
AL + NI G + Q Q +I+ GALP + +L +E+ I +E W +SNI G EQI
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQI 173
Query: 529 QAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVRE-GCVKPLCDLL 587
QAVID+G + +V LL + +EA WA+SN G + K V+E G ++ L L
Sbjct: 174 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEAGALEKLEQLQ 231
Query: 588 LCADPKIVTVCLEGLENI 605
+ KI E LE +
Sbjct: 232 SHENEKIQKEAQEALEKL 249
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/243 (35%), Positives = 128/243 (52%), Gaps = 12/243 (4%)
Query: 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQ 299
LP M + SDD QL AT F +LS D + I VI +G +P V+ L + LQ
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 300 FKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCR 359
+A WAL+NIASG +E + VID GA+P V+LL+SP+ + ++ +WAL N+A
Sbjct: 73 -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 360 DLVLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCRGKPQPPFNQVRP-----ALPVLA 414
V+ GAL P +L+ A W L N G + Q++ ALP L
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNE----QIQAVIDAGALPALV 186
Query: 415 QLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTI 474
QL+ S +E++L +A WALS ++ G N++ QAV EAG +L +L H + + A +
Sbjct: 187 QLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246
Query: 475 RNI 477
+
Sbjct: 247 EKL 249
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 136/291 (46%), Gaps = 57/291 (19%)
Query: 283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRK 342
+P+ + L D Q Q A + I S +E + VID GA+P V+LL+SP+ +
Sbjct: 14 LPQMTQQLNSDDM-QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQI-- 70
Query: 343 QTVWALGNVAGDSPRCRDLVLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCRGKPQPP 402
L+ A W L N G +
Sbjct: 71 -----------------------------------------LQEALWALSNIASGGNE-- 87
Query: 403 FNQVRP-----ALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVE 457
Q++ ALP L QL+ S +E++L +A WALS ++ G N+++QAVI+AG P LV+
Sbjct: 88 --QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ 145
Query: 458 LLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWII 517
LL + +L AL + NI G + Q Q +I+ GALP + +L +E+ I +E W +
Sbjct: 146 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWAL 204
Query: 518 SNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTH 568
SNI G EQ QAV ++G + + L + +KEA A+ K +H
Sbjct: 205 SNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL---EKLQSH 252
>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|B Chain B, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|C Chain C, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|D Chain D, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|E Chain E, Designed Armadillo Repeat Protein (Yiiim3aiii)
pdb|4DB9|F Chain F, Designed Armadillo Repeat Protein (Yiiim3aiii)
Length = 210
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 109/197 (55%), Gaps = 4/197 (2%)
Query: 410 LPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTP 469
LP + Q + S D++ L A LS ++ G N+++QAVI+AG P LV+LL + +L
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 470 ALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQ 529
AL + NI G + Q Q +I+ GALP + +L +E+ I +E W +SNI G EQIQ
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQ 132
Query: 530 AVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLC 589
AVID+G + +V LL + +EA WA+SN G + K V+E +P + L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEAGAEPALEQLQS 190
Query: 590 A-DPKIVTVCLEGLENI 605
+ + KI E LE I
Sbjct: 191 SPNEKIQKEAQEALEKI 207
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 97/161 (60%), Gaps = 6/161 (3%)
Query: 409 ALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLT 468
ALP L QL+ S +E++L +A WALS ++ G N+++QAVI+AG P LV+LL + +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 469 PALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQI 528
AL + NI G + Q Q +I+ GALP + +L +E+ I +E W +SNI G EQ
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQK 173
Query: 529 QAVIDSGLIGPIVNLLQNTEFDT-KKEAAWAISNATKFGTH 568
QAV ++G P + LQ++ + +KEA A+ K +H
Sbjct: 174 QAVKEAG-AEPALEQLQSSPNEKIQKEAQEAL---EKIQSH 210
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 102/200 (51%), Gaps = 11/200 (5%)
Query: 283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRK 342
+P+ V+ L D +LQ A L+ IASG +E + VID GA+P V+LL+SP+ + +
Sbjct: 14 LPQMVQQLNSPDQQELQ-SALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 343 QTVWALGNVAGDSPRCRDLVLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCRGKPQPP 402
+ +WAL N+A V+ GAL P +L+ A W L N G
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGG---- 127
Query: 403 FNQVRP-----ALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVE 457
Q++ ALP L QL+ S +E++L +A WALS ++ G N++ QAV EAG P L +
Sbjct: 128 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQ 187
Query: 458 LLGHSSSSVLTPALRTIRNI 477
L + + A + I
Sbjct: 188 LQSSPNEKIQKEAQEALEKI 207
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 99/197 (50%), Gaps = 4/197 (2%)
Query: 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQ 299
LP MV + S D +L++ ++ ++ + I VI +G +P V+ L + LQ
Sbjct: 14 LPQMVQQLNSPDQQ-ELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 300 FKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCR 359
+A WAL+NIASG +E + VID GA+P V+LL+SP+ + ++ +WAL N+A
Sbjct: 73 -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 360 DLVLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCR-GKPQPPFNQVRPALPVLAQLIR 418
V+ GAL P +L+ A W L N G Q + A P L QL
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQS 190
Query: 419 SNDEEVLTDACWALSYL 435
S +E++ +A AL +
Sbjct: 191 SPNEKIQKEAQEALEKI 207
>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii)
Length = 210
Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 109/197 (55%), Gaps = 4/197 (2%)
Query: 410 LPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTP 469
LP + Q + S D++ L A LS ++ G N+++QAVI+AG P LV+LL + +L
Sbjct: 14 LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 470 ALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQ 529
AL + NI G + Q Q +I+ GALP + +L +E+ I +E W +SNI G EQIQ
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQIQ 132
Query: 530 AVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVRE-GCVKPLCDLLL 588
AVID+G + +V LL + +EA WA+SN G + K V+E G ++ L L
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEAGALEKLEQLQS 190
Query: 589 CADPKIVTVCLEGLENI 605
+ KI E LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 110/210 (52%), Gaps = 15/210 (7%)
Query: 453 PRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKE 512
P++V+ L L ALR + I G + Q Q +I+ GALP + +L +E+ I +E
Sbjct: 15 PQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQE 73
Query: 513 VSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIK 572
W +SNI G EQIQAVID+G + +V LL + +EA WA+SN G +EQI+
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN-IASGGNEQIQ 132
Query: 573 HLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEA 632
++ G + L LL + +I+ L L NI G N+ Q V+EA
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKEA 179
Query: 633 EGLEKIENLQSHDDNGISEKAVEILETYWS 662
LEK+E LQSH++ I ++A E LE S
Sbjct: 180 GALEKLEQLQSHENEKIQKEAQEALEKLQS 209
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 94/160 (58%), Gaps = 4/160 (2%)
Query: 409 ALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLT 468
ALP L QL+ S +E++L +A WALS ++ G N+++QAVI+AG P LV+LL + +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 469 PALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQI 528
AL + NI G + Q Q +I+ GALP + +L +E+ I +E W +SNI G EQ
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQK 173
Query: 529 QAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTH 568
QAV ++G + + L + +KEA A+ K +H
Sbjct: 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEAL---EKLQSH 210
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 104/200 (52%), Gaps = 11/200 (5%)
Query: 283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRK 342
+P+ V+ L D +LQ A L+ IASG +E + VID GA+P V+LL+SP+ + +
Sbjct: 14 LPQMVQQLNSPDQQELQ-SALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 343 QTVWALGNVAGDSPRCRDLVLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCRGKPQPP 402
+ +WAL N+A V+ GAL P +L+ A W L N G +
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNE-- 129
Query: 403 FNQVRP-----ALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVE 457
Q++ ALP L QL+ S +E++L +A WALS ++ G N++ QAV EAG +L +
Sbjct: 130 --QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQ 187
Query: 458 LLGHSSSSVLTPALRTIRNI 477
L H + + A + +
Sbjct: 188 LQSHENEKIQKEAQEALEKL 207
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Query: 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQ 299
LPA+V + S + + EA N+ S I VI +G +P V+ L + LQ
Sbjct: 56 LPALVQLLSSPNEQILQEALWALSNIASGGNEQ-IQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 300 FKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCR 359
+A WAL+NIASG +E + VID GA+P V+LL+SP+ + ++ +WAL N+A +
Sbjct: 115 -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 173
Query: 360 DLVLSQGAL 368
V GAL
Sbjct: 174 QAVKEAGAL 182
>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|B Chain B, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|C Chain C, Designed Armadillo Repeat Protein (Yiim3aii)
pdb|4DBA|D Chain D, Designed Armadillo Repeat Protein (Yiim3aii)
Length = 210
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 75/198 (37%), Positives = 108/198 (54%), Gaps = 6/198 (3%)
Query: 410 LPVLAQLIRSNDEEVLTDACWALSY-LSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLT 468
LP + Q + S+D + A S LSDG N+++QAVI+AG P LV+LL + +L
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 469 PALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQI 528
AL + NI G + Q Q +I+ GALP + +L +E+ I +E W +SNI G EQI
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQI 131
Query: 529 QAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVRE-GCVKPLCDLL 587
QAVID+G + +V LL + +EA WA+SN G + K V+E G ++ L L
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEAGALEKLEQLQ 189
Query: 588 LCADPKIVTVCLEGLENI 605
+ KI E LE +
Sbjct: 190 SHENEKIQKEAQEALEKL 207
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/160 (38%), Positives = 94/160 (58%), Gaps = 4/160 (2%)
Query: 409 ALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLT 468
ALP L QL+ S +E++L +A WALS ++ G N+++QAVI+AG P LV+LL + +L
Sbjct: 55 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 114
Query: 469 PALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQI 528
AL + NI G + Q Q +I+ GALP + +L +E+ I +E W +SNI G EQ
Sbjct: 115 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQEALWALSNIASGGNEQK 173
Query: 529 QAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTH 568
QAV ++G + + L + +KEA A+ K +H
Sbjct: 174 QAVKEAGALEKLEQLQSHENEKIQKEAQEAL---EKLQSH 210
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 106/210 (50%), Gaps = 15/210 (7%)
Query: 453 PRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKE 512
P++ + L A R I+ + Q Q +I+ GALP + +L +E+ I +E
Sbjct: 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQ-ILQE 73
Query: 513 VSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIK 572
W +SNI G EQIQAVID+G + +V LL + +EA WA+SN G +EQI+
Sbjct: 74 ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS-GGNEQIQ 132
Query: 573 HLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEA 632
++ G + L LL + +I+ L L NI G N+ Q V+EA
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-------------NEQKQAVKEA 179
Query: 633 EGLEKIENLQSHDDNGISEKAVEILETYWS 662
LEK+E LQSH++ I ++A E LE S
Sbjct: 180 GALEKLEQLQSHENEKIQKEAQEALEKLQS 209
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 99/200 (49%), Gaps = 11/200 (5%)
Query: 283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRK 342
+P+ + L D Q Q A + I S +E + VID GA+P V+LL+SP+ + +
Sbjct: 14 LPQMTQQLNSDDM-QEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 343 QTVWALGNVAGDSPRCRDLVLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCRGKPQPP 402
+ +WAL N+A V+ GAL P +L+ A W L N G +
Sbjct: 73 EALWALSNIASGGNEQIQAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNE-- 129
Query: 403 FNQVRP-----ALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVE 457
Q++ ALP L QL+ S +E++L +A WALS ++ G N++ QAV EAG +L +
Sbjct: 130 --QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQ 187
Query: 458 LLGHSSSSVLTPALRTIRNI 477
L H + + A + +
Sbjct: 188 LQSHENEKIQKEAQEALEKL 207
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 99/197 (50%), Gaps = 4/197 (2%)
Query: 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQ 299
LP M + SDD QL AT F +LS D + I VI +G +P V+ L + LQ
Sbjct: 14 LPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 300 FKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCR 359
+A WAL+NIASG +E + VID GA+P V+LL+SP+ + ++ +WAL N+A
Sbjct: 73 -EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 360 DLVLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCR-GKPQPPFNQVRPALPVLAQLIR 418
V+ GAL P +L+ A W L N G Q + AL L QL
Sbjct: 132 QAVIDAGAL-PALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 190
Query: 419 SNDEEVLTDACWALSYL 435
+E++ +A AL L
Sbjct: 191 HENEKIQKEAQEALEKL 207
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 5/227 (2%)
Query: 385 RTATWTLFNFCRGKPQPPFNQVRPA--LPVLAQLIRSNDEEVLTDACWALSYLSDGTNDK 442
+ A L G P + A + VL +L+ S D EV +A AL+ ++ G ++
Sbjct: 20 KEAARDLAEIASG-PASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 78
Query: 443 VQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLV 502
++A+++AG LV+LL + S V A R + NI G D + I++ G + + +L
Sbjct: 79 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 138
Query: 503 HNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNA 562
E ++KE + ++NI G E I+A++D+G + +V LL +T+ + +KEAA A++N
Sbjct: 139 STDSE-VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALAN- 196
Query: 563 TKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVG 609
G IK +V G V+ L LL D ++ LENI G
Sbjct: 197 IASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 128/286 (44%), Gaps = 48/286 (16%)
Query: 283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRK 342
V + V+ L D + Q +AA L IASG + K ++D G V + VKLL S +V+K
Sbjct: 4 VEKLVKLLTSTDS-ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQK 62
Query: 343 QTVWALGNVAGDSPRCRDLVLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCRGKPQPP 402
+ A L N G P
Sbjct: 63 E-------------------------------------------AARALANIASG-PDEA 78
Query: 403 FNQVRPA--LPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLG 460
+ A + VL +L+ S D EV +A AL+ ++ G ++ ++A+++AG LV+LL
Sbjct: 79 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 138
Query: 461 HSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNI 520
+ S V A R + NI G D + I++ G + + +L E ++KE + ++NI
Sbjct: 139 STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSE-VQKEAARALANI 197
Query: 521 TCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFG 566
G I+A++D+G + + LL +T+ + +KEA A+ N G
Sbjct: 198 ASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/250 (29%), Positives = 125/250 (50%), Gaps = 15/250 (6%)
Query: 413 LAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALR 472
L +L+ S D E +A L+ ++ G ++A+++AG LV+LL + S V A R
Sbjct: 7 LVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAAR 66
Query: 473 TIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVI 532
+ NI G D + I++ G + + +L E ++KE + ++NI G E I+A++
Sbjct: 67 ALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSE-VQKEAARALANIASGPDEAIKAIV 125
Query: 533 DSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADP 592
D+G + +V LL +T+ + +KEAA A++N G E IK +V G V+ L LL D
Sbjct: 126 DAGGVEVLVKLLTSTDSEVQKEAARALAN-IASGPDEAIKAIVDAGGVEVLVKLLTSTDS 184
Query: 593 KIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEK 652
++ L NI A G + +V +A G+E ++ L + D+ + ++
Sbjct: 185 EVQKEAARALANI------------ASGPTSAIKAIV-DAGGVEVLQKLLTSTDSEVQKE 231
Query: 653 AVEILETYWS 662
A LE S
Sbjct: 232 AQRALENIKS 241
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 117/276 (42%), Gaps = 45/276 (16%)
Query: 249 SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTN 308
S D+ Q EA + S S I ++ +G V V+ L D ++Q +AA AL N
Sbjct: 13 STDSETQKEAARDLAEIASGPASA-IKAIVDAGGVEVLVKLLTSTDS-EVQKEAARALAN 70
Query: 309 IASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGAL 368
IASG E K ++D G V + VKLL S +V+K+ AL N+A ++ G
Sbjct: 71 IASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAG-- 128
Query: 369 IPXXXXXXXXXXXSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDA 428
+ VL +L+ S D EV +A
Sbjct: 129 ----------------------------------------GVEVLVKLLTSTDSEVQKEA 148
Query: 429 CWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCI 488
AL+ ++ G ++ ++A+++AG LV+LL + S V A R + NI G + I
Sbjct: 149 ARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAI 208
Query: 489 INCGALPYFLDMLVHNHEESIKKEVSWIISNITCGN 524
++ G + +L E ++KE + NI G
Sbjct: 209 VDAGGVEVLQKLLTSTDSE-VQKEAQRALENIKSGG 243
>pdb|2DB0|A Chain A, Crystal Structure Of Ph0542
pdb|2DB0|B Chain B, Crystal Structure Of Ph0542
Length = 253
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 20/98 (20%)
Query: 385 RTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQ 444
R T NF + F V P LP + L+ DE V A AL +L+ NDK++
Sbjct: 158 REDKLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLA-TLNDKLR 216
Query: 445 AV------------------IEAGVYPRLVELLGHSSS 464
V ++ G+ RL+ L GHSSS
Sbjct: 217 KVVIKRLEELNDTSSLVNKTVKEGI-SRLLLLEGHSSS 253
>pdb|1OYZ|A Chain A, X-Ray Structure Of Yiba_ecoli Northeast Structural
Genomics Consortium Target Et31
Length = 280
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 8/77 (10%)
Query: 284 PRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQ 343
P+ VE Q Q A TN+ T+ V+ D +P+ + LL P+ DVR
Sbjct: 127 PKIVE--------QSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNW 178
Query: 344 TVWALGNVAGDSPRCRD 360
+A+ D+ RD
Sbjct: 179 AAFAININKYDNSDIRD 195
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 279 QSGVVPRFVEFLMRQ-DYPQLQFK--AAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS 335
+ +VP + F+ P +++ A A +I G N + A+P ++L+
Sbjct: 360 EDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGSILEGPEPNQLKPLVIQAMPTLIELMKD 419
Query: 336 PSVDVRKQTVWALGNV 351
PSV VR T W +G +
Sbjct: 420 PSVVVRDTTAWTVGRI 435
>pdb|4DJS|A Chain A, Structure Of Beta-Catenin In Complex With A Stapled
Peptide Inhibitor
Length = 518
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 22/142 (15%)
Query: 420 NDEEVLTDACWA-----LSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTI 474
N +V T C A LS+ +G + A+ ++G P LV++LG SVL A+ T+
Sbjct: 57 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 112
Query: 475 RNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC------GNREQI 528
N++ + + G L + +L K V ++ C GN+E
Sbjct: 113 HNLLLHQEGAKMAVRLAGGLQKMVALLN-------KTNVKFLAITTDCLQILAYGNQESK 165
Query: 529 QAVIDSGLIGPIVNLLQNTEFD 550
++ SG +VN+++ ++
Sbjct: 166 LIILASGGPQALVNIMRTYTYE 187
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 279 QSGVVPRFVEFLMR--QDY--------PQLQFKAAWALTNIASGTS----------ENTK 318
+ G +PR V+ L+R QD Q QF + I G + N
Sbjct: 382 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 441
Query: 319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGD 354
V+ +P+FV+LL SP ++++ L +A D
Sbjct: 442 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 477
>pdb|2BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 516
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 22/142 (15%)
Query: 420 NDEEVLTDACWA-----LSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTI 474
N +V T C A LS+ +G + A+ ++G P LV++LG SVL A+ T+
Sbjct: 55 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 110
Query: 475 RNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC------GNREQI 528
N++ + + G L + +L K V ++ C GN+E
Sbjct: 111 HNLLLHQEGAKMAVRLAGGLQKMVALLN-------KTNVKFLAITTDCLQILAYGNQESK 163
Query: 529 QAVIDSGLIGPIVNLLQNTEFD 550
++ SG +VN+++ ++
Sbjct: 164 LIILASGGPQALVNIMRTYTYE 185
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 279 QSGVVPRFVEFLMR--QDY--------PQLQFKAAWALTNIASGTS----------ENTK 318
+ G +PR V+ L+R QD Q QF + I G + N
Sbjct: 380 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 439
Query: 319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGD 354
V+ +P+FV+LL SP ++++ L +A D
Sbjct: 440 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 475
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 77/360 (21%), Positives = 133/360 (36%), Gaps = 35/360 (9%)
Query: 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQ 299
+PA+V + S +S+ A T NLL + V +G + + V L + + L
Sbjct: 88 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM-AVRLAGGLQKMVALLNKTNVKFLA 146
Query: 300 FKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC- 358
L +A G E+ +++ G V ++ + + + + +W V C
Sbjct: 147 ITTD-CLQILAYGNQESKLIILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCS 202
Query: 359 --RDLVLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQL 416
+ ++ G + +++ WTL N + + L L QL
Sbjct: 203 SNKPAIVEAGGM-QALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQL 259
Query: 417 IRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVE--LLGHSSSSVLTPALRTI 474
+ S+D V+T A LS L+ V + G LV L + PA+ +
Sbjct: 260 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 319
Query: 475 RNIVKGDDFQTQCIINCGALPYFLDMLVH-----NHEESIKKEVSWIISNITC-GNREQI 528
R++ + + N L Y L ++V +H IK V I + C N +
Sbjct: 320 RHLTSRHQ-EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPL 378
Query: 529 QAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVR-----EGCVKPL 583
+ + G I +V LL DT++ + GT +Q VR EGC L
Sbjct: 379 R---EQGAIPRLVQLLVRAHQDTQRRTSMG-------GTQQQFVEGVRMEEIVEGCTGAL 428
>pdb|1T08|A Chain A, Crystal Structure Of Beta-CateninICAT HELICAL
DomainUNPHOSPHORYLATED APC R3
Length = 519
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 22/142 (15%)
Query: 420 NDEEVLTDACWA-----LSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTI 474
N +V T C A LS+ +G + A+ ++G P LV++LG SVL A+ T+
Sbjct: 59 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 114
Query: 475 RNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC------GNREQI 528
N++ + + G L + +L K V ++ C GN+E
Sbjct: 115 HNLLLHQEGAKMAVRLAGGLQKMVALLN-------KTNVKFLAITTDCLQILAYGNQESK 167
Query: 529 QAVIDSGLIGPIVNLLQNTEFD 550
++ SG +VN+++ ++
Sbjct: 168 LIILASGGPQALVNIMRTYTYE 189
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 279 QSGVVPRFVEFLMR--QDY--------PQLQFKAAWALTNIASGTS----------ENTK 318
+ G +PR V+ L+R QD Q QF + I G + N
Sbjct: 384 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 443
Query: 319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGD 354
V+ +P+FV+LL SP ++++ L +A D
Sbjct: 444 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 479
>pdb|1G3J|A Chain A, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1G3J|C Chain C, Crystal Structure Of The Xtcf3-CbdBETA-Catenin Armadillo
Repeat Complex
pdb|1TH1|A Chain A, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
pdb|1TH1|B Chain B, Beta-Catenin In Complex With A Phosphorylated Apc 20aa
Repeat Fragment
Length = 532
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 22/142 (15%)
Query: 420 NDEEVLTDACWA-----LSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTI 474
N +V T C A LS+ +G + A+ ++G P LV++LG SVL A+ T+
Sbjct: 72 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 127
Query: 475 RNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC------GNREQI 528
N++ + + G L + +L K V ++ C GN+E
Sbjct: 128 HNLLLHQEGAKMAVRLAGGLQKMVALLN-------KTNVKFLAITTDCLQILAYGNQESK 180
Query: 529 QAVIDSGLIGPIVNLLQNTEFD 550
++ SG +VN+++ ++
Sbjct: 181 LIILASGGPQALVNIMRTYTYE 202
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 279 QSGVVPRFVEFLMR--QDY--------PQLQFKAAWALTNIASGTS----------ENTK 318
+ G +PR V+ L+R QD Q QF + I G + N
Sbjct: 397 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 456
Query: 319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGD 354
V+ +P+FV+LL SP ++++ L +A D
Sbjct: 457 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 492
>pdb|1LUJ|A Chain A, Crystal Structure Of The Beta-CateninICAT COMPLEX
Length = 514
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 22/142 (15%)
Query: 420 NDEEVLTDACWA-----LSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTI 474
N +V T C A LS+ +G + A+ ++G P LV++LG SVL A+ T+
Sbjct: 55 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 110
Query: 475 RNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC------GNREQI 528
N++ + + G L + +L K V ++ C GN+E
Sbjct: 111 HNLLLHQEGAKMAVRLAGGLQKMVALLN-------KTNVKFLAITTDCLQILAYGNQESK 163
Query: 529 QAVIDSGLIGPIVNLLQNTEFD 550
++ SG +VN+++ ++
Sbjct: 164 LIILASGGPQALVNIMRTYTYE 185
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 279 QSGVVPRFVEFLMR--QDY--------PQLQFKAAWALTNIASGTS----------ENTK 318
+ G +PR V+ L+R QD Q QF + I G + N
Sbjct: 380 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 439
Query: 319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGD 354
V+ +P+FV+LL SP ++++ L +A D
Sbjct: 440 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 475
>pdb|3OUW|A Chain A, Structure Of Beta-Catenin With Lef-1
pdb|3OUX|A Chain A, Structure Of Beta-Catenin With Phosphorylated Lef-1
Length = 540
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 22/142 (15%)
Query: 420 NDEEVLTDACWA-----LSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTI 474
N +V T C A LS+ +G + A+ ++G P LV++LG SVL A+ T+
Sbjct: 73 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 128
Query: 475 RNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC------GNREQI 528
N++ + + G L + +L K V ++ C GN+E
Sbjct: 129 HNLLLHQEGAKMAVRLAGGLQKMVALLN-------KTNVKFLAITTDCLQILAYGNQESK 181
Query: 529 QAVIDSGLIGPIVNLLQNTEFD 550
++ SG +VN+++ ++
Sbjct: 182 LIILASGGPQALVNIMRTYTYE 203
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 279 QSGVVPRFVEFLMR--QDY--------PQLQFKAAWALTNIASGTS----------ENTK 318
+ G +PR V+ L+R QD Q QF + I G + N
Sbjct: 398 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 457
Query: 319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGD 354
V+ +P+FV+LL SP ++++ L +A D
Sbjct: 458 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 493
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 77/360 (21%), Positives = 133/360 (36%), Gaps = 35/360 (9%)
Query: 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQ 299
+PA+V + S +S+ A T NLL + V +G + + V L + + L
Sbjct: 106 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM-AVRLAGGLQKMVALLNKTNVKFLA 164
Query: 300 FKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC- 358
L +A G E+ +++ G V ++ + + + + +W V C
Sbjct: 165 ITTD-CLQILAYGNQESKLIILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCS 220
Query: 359 --RDLVLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQL 416
+ ++ G + +++ WTL N + + L L QL
Sbjct: 221 SNKPAIVEAGGM-QALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQL 277
Query: 417 IRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVE--LLGHSSSSVLTPALRTI 474
+ S+D V+T A LS L+ V + G LV L + PA+ +
Sbjct: 278 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 337
Query: 475 RNIVKGDDFQTQCIINCGALPYFLDMLVH-----NHEESIKKEVSWIISNITC-GNREQI 528
R++ + + N L Y L ++V +H IK V I + C N +
Sbjct: 338 RHLTSRHQ-EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPL 396
Query: 529 QAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVR-----EGCVKPL 583
+ + G I +V LL DT++ + GT +Q VR EGC L
Sbjct: 397 R---EQGAIPRLVQLLVRAHQDTQRRTSMG-------GTQQQFVEGVRMEEIVEGCTGAL 446
>pdb|3TX7|A Chain A, Crystal Structure Of Lrh-1BETA-Catenin Complex
Length = 527
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 22/142 (15%)
Query: 420 NDEEVLTDACWA-----LSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTI 474
N +V T C A LS+ +G + A+ ++G P LV++LG SVL A+ T+
Sbjct: 68 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 123
Query: 475 RNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC------GNREQI 528
N++ + + G L + +L K V ++ C GN+E
Sbjct: 124 HNLLLHQEGAKMAVRLAGGLQKMVALLN-------KTNVKFLAITTDCLQILAYGNQESK 176
Query: 529 QAVIDSGLIGPIVNLLQNTEFD 550
++ SG +VN+++ ++
Sbjct: 177 LIILASGGPQALVNIMRTYTYE 198
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 279 QSGVVPRFVEFLMR--QDY--------PQLQFKAAWALTNIASGTS----------ENTK 318
+ G +PR V+ L+R QD Q QF + I G + N
Sbjct: 393 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 452
Query: 319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGD 354
V+ +P+FV+LL SP ++++ L +A D
Sbjct: 453 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488
>pdb|2GL7|A Chain A, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
pdb|2GL7|D Chain D, Crystal Structure Of A Beta-CateninBCL9TCF4 COMPLEX
Length = 550
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 22/142 (15%)
Query: 420 NDEEVLTDACWA-----LSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTI 474
N +V T C A LS+ +G + A+ ++G P LV++LG SVL A+ T+
Sbjct: 68 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 123
Query: 475 RNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC------GNREQI 528
N++ + + G L + +L K V ++ C GN+E
Sbjct: 124 HNLLLHQEGAKMAVRLAGGLQKMVALLN-------KTNVKFLAITTDCLQILAYGNQESK 176
Query: 529 QAVIDSGLIGPIVNLLQNTEFD 550
++ SG +VN+++ ++
Sbjct: 177 LIILASGGPQALVNIMRTYTYE 198
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 279 QSGVVPRFVEFLMR--QDY--------PQLQFKAAWALTNIASGTS----------ENTK 318
+ G +PR V+ L+R QD Q QF + I G + N
Sbjct: 393 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 452
Query: 319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGD 354
V+ +P+FV+LL SP ++++ L +A D
Sbjct: 453 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 488
>pdb|1JPW|A Chain A, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|B Chain B, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
pdb|1JPW|C Chain C, Crystal Structure Of A Human Tcf-4 BETA-Catenin Complex
Length = 540
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 22/142 (15%)
Query: 420 NDEEVLTDACWA-----LSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTI 474
N +V T C A LS+ +G + A+ ++G P LV++LG SVL A+ T+
Sbjct: 74 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 129
Query: 475 RNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC------GNREQI 528
N++ + + G L + +L K V ++ C GN+E
Sbjct: 130 HNLLLHQEGAKMAVRLAGGLQKMVALLN-------KTNVKFLAITTDCLQILAYGNQESK 182
Query: 529 QAVIDSGLIGPIVNLLQNTEFD 550
++ SG +VN+++ ++
Sbjct: 183 LIILASGGPQALVNIMRTYTYE 204
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 279 QSGVVPRFVEFLMR--QDY--------PQLQFKAAWALTNIASGTS----------ENTK 318
+ G +PR V+ L+R QD Q QF + I G + N
Sbjct: 399 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 458
Query: 319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGD 354
V+ +P+FV+LL SP ++++ L +A D
Sbjct: 459 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 494
>pdb|1I7X|A Chain A, Beta-CateninE-Cadherin Complex
pdb|1I7X|C Chain C, Beta-CateninE-Cadherin Complex
pdb|1I7W|A Chain A, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|C Chain C, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1JPP|A Chain A, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1JPP|B Chain B, The Structure Of A Beta-Catenin Binding Repeat From
Adenomatous Polyposis Coli (Apc) In Complex With
Beta-Catenin
pdb|1M1E|A Chain A, Beta-Catenin Armadillo Repeat Domain Bound To Icat
pdb|1V18|A Chain A, The Crystal Structure Of Beta-Catenin Armadillo Repeat
Complexed With A Phosphorylated Apc 20mer Repeat
Length = 538
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 22/142 (15%)
Query: 420 NDEEVLTDACWA-----LSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTI 474
N +V T C A LS+ +G + A+ ++G P LV++LG SVL A+ T+
Sbjct: 71 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 126
Query: 475 RNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC------GNREQI 528
N++ + + G L + +L K V ++ C GN+E
Sbjct: 127 HNLLLHQEGAKMAVRLAGGLQKMVALLN-------KTNVKFLAITTDCLQILAYGNQESK 179
Query: 529 QAVIDSGLIGPIVNLLQNTEFD 550
++ SG +VN+++ ++
Sbjct: 180 LIILASGGPQALVNIMRTYTYE 201
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 279 QSGVVPRFVEFLMR--QDY--------PQLQFKAAWALTNIASGTS----------ENTK 318
+ G +PR V+ L+R QD Q QF + I G + N
Sbjct: 396 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 455
Query: 319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGD 354
V+ +P+FV+LL SP ++++ L +A D
Sbjct: 456 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 491
>pdb|1QZ7|A Chain A, Beta-Catenin Binding Domain Of Axin In Complex With Beta-
Catenin
Length = 533
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 22/142 (15%)
Query: 420 NDEEVLTDACWA-----LSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTI 474
N +V T C A LS+ +G + A+ ++G P LV++LG SVL A+ T+
Sbjct: 72 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 127
Query: 475 RNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC------GNREQI 528
N++ + + G L + +L K V ++ C GN+E
Sbjct: 128 HNLLLHQEGAKMAVRLAGGLQKMVALLN-------KTNVKFLAITTDCLQILAYGNQESK 180
Query: 529 QAVIDSGLIGPIVNLLQNTEFD 550
++ SG +VN+++ ++
Sbjct: 181 LIILASGGPQALVNIMRTYTYE 202
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 279 QSGVVPRFVEFLMR--QDY--------PQLQFKAAWALTNIASGTS----------ENTK 318
+ G +PR V+ L+R QD Q QF + I G + N
Sbjct: 397 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 456
Query: 319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGD 354
V+ +P+FV+LL SP ++++ L +A D
Sbjct: 457 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 492
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 77/360 (21%), Positives = 133/360 (36%), Gaps = 35/360 (9%)
Query: 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQ 299
+PA+V + S +S+ A T NLL + V +G + + V L + + L
Sbjct: 105 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM-AVRLAGGLQKMVALLNKTNVKFLA 163
Query: 300 FKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC- 358
L +A G E+ +++ G V ++ + + + + +W V C
Sbjct: 164 ITTD-CLQILAYGNQESKLIILASGGPQALVNIMRTYTYE---KLLWTTSRVLKVLSVCS 219
Query: 359 --RDLVLSQGALIPXXXXXXXXXXXSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQL 416
+ ++ G + +++ WTL N + + L L QL
Sbjct: 220 SNKPAIVEAGGM-QALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQL 276
Query: 417 IRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVE--LLGHSSSSVLTPALRTI 474
+ S+D V+T A LS L+ V + G LV L + PA+ +
Sbjct: 277 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 336
Query: 475 RNIVKGDDFQTQCIINCGALPYFLDMLVH-----NHEESIKKEVSWIISNITC-GNREQI 528
R++ + + N L Y L ++V +H IK V I + C N +
Sbjct: 337 RHLTSRHQ-EAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPL 395
Query: 529 QAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVR-----EGCVKPL 583
+ + G I +V LL DT++ + GT +Q VR EGC L
Sbjct: 396 R---EQGAIPRLVQLLVRAHQDTQRRTSMG-------GTQQQFVEGVRMEEIVEGCTGAL 445
>pdb|1JDH|A Chain A, Crystal Structure Of Beta-Catenin And Htcf-4
Length = 529
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 22/142 (15%)
Query: 420 NDEEVLTDACWA-----LSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTI 474
N +V T C A LS+ +G + A+ ++G P LV++LG SVL A+ T+
Sbjct: 70 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 125
Query: 475 RNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC------GNREQI 528
N++ + + G L + +L K V ++ C GN+E
Sbjct: 126 HNLLLHQEGAKMAVRLAGGLQKMVALLN-------KTNVKFLAITTDCLQILAYGNQESK 178
Query: 529 QAVIDSGLIGPIVNLLQNTEFD 550
++ SG +VN+++ ++
Sbjct: 179 LIILASGGPQALVNIMRTYTYE 200
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 279 QSGVVPRFVEFLMR--QDY--------PQLQFKAAWALTNIASGTS----------ENTK 318
+ G +PR V+ L+R QD Q QF + I G + N
Sbjct: 395 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 454
Query: 319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGD 354
V+ +P+FV+LL SP ++++ L +A D
Sbjct: 455 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 490
>pdb|2Z6H|A Chain A, Crystal Structure Of Beta-Catenin Armadillo Repeat Region
And Its C-Terminal Domain
Length = 644
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 22/142 (15%)
Query: 420 NDEEVLTDACWA-----LSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTI 474
N +V T C A LS+ +G + A+ ++G P LV++LG SVL A+ T+
Sbjct: 67 NTNDVETARCTAGTLHNLSHHREG----LLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122
Query: 475 RNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC------GNREQI 528
N++ + + G L + +L K V ++ C GN+E
Sbjct: 123 HNLLLHQEGAKMAVRLAGGLQKMVALLN-------KTNVKFLAITTDCLQILAYGNQESK 175
Query: 529 QAVIDSGLIGPIVNLLQNTEFD 550
++ SG +VN+++ ++
Sbjct: 176 LIILASGGPQALVNIMRTYTYE 197
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 20/96 (20%)
Query: 279 QSGVVPRFVEFLMR--QDY--------PQLQFKAAWALTNIASGTS----------ENTK 318
+ G +PR V+ L+R QD Q QF + I G + N
Sbjct: 392 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI 451
Query: 319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGD 354
V+ +P+FV+LL SP ++++ L +A D
Sbjct: 452 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 487
>pdb|2Z5C|B Chain B, Crystal Structure Of A Novel Chaperone Complex For Yeast
20s Proteasome Assembly
pdb|2Z5C|E Chain E, Crystal Structure Of A Novel Chaperone Complex For Yeast
20s Proteasome Assembly
Length = 149
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 571 IKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVE 630
+ HL V L D ADPK+ VC++ E +V + E+ +GT D Q++ L+
Sbjct: 59 LNHLSDYQVVTKLGD---SADPKVPVVCVQIAELYRRVILPEV-SGTMAQDNMQFSLLIS 114
Query: 631 EAEGLEKIENLQSHDDNGISE 651
+ + + QS DDN +
Sbjct: 115 MSSKIWRATKEQSADDNDFGK 135
>pdb|1YRE|A Chain A, Hypothetical Protein Pa3270 From Pseudomonas Aeruginosa In
Complex With Coa
pdb|1YRE|B Chain B, Hypothetical Protein Pa3270 From Pseudomonas Aeruginosa In
Complex With Coa
pdb|1YRE|C Chain C, Hypothetical Protein Pa3270 From Pseudomonas Aeruginosa In
Complex With Coa
pdb|1YRE|D Chain D, Hypothetical Protein Pa3270 From Pseudomonas Aeruginosa In
Complex With Coa
Length = 197
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 195 WIWVHD------LNTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVW 248
W W+ LN IKYL LK + L+ R ++ST +L Q ++ L A +GV
Sbjct: 101 WTWLDQAQHGSGLNRMIKYLMLKHAFDNLRMVRVQLSTAASNLRAQGAIDKLGAQREGVL 160
Query: 249 SDDNSL 254
+ L
Sbjct: 161 RNHRRL 166
>pdb|2Z6G|A Chain A, Crystal Structure Of A Full-Length Zebrafish Beta-Catenin
Length = 780
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 69/169 (40%), Gaps = 18/169 (10%)
Query: 445 AVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHN 504
A+ ++G P LV +LG SVL A+ T+ N++ + + G L + +L
Sbjct: 229 AIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN-- 286
Query: 505 HEESIKKEVSWIISNITC------GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWA 558
K V ++ C GN+E ++ SG +VN+++ ++ + W
Sbjct: 287 -----KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYE---KLLWT 338
Query: 559 ISNATKFGT--HEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENI 605
S K + +V G ++ L L ++V CL L N+
Sbjct: 339 TSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 387
>pdb|3U31|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
pdb|3U3D|A Chain A, Plasmodium Falciparum Sir2a Preferentially Hydrolyzes
Medium And Long Chain Fatty Acyl Lysine
Length = 290
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 57 CDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLV 116
CD L+ ++ +S++ TNL CK+ K ++ +I+KT + + + C K +E+ V
Sbjct: 217 CDLLL-VIGTSSTVSTATNLCHFACKKKKKIVEINISKTYITNKMSDYHVCAKFSELTKV 275
Query: 117 DDVV 120
+++
Sbjct: 276 ANIL 279
>pdb|1GCJ|A Chain A, N-Terminal Fragment Of Importin-Beta
pdb|1GCJ|B Chain B, N-Terminal Fragment Of Importin-Beta
Length = 460
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 279 QSGVVPRFVEFLMRQ-DYPQLQFK--AAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS 335
+ +VP + F+ P +++ A A +I G N + A P ++L
Sbjct: 366 EDDIVPHVLPFIKEHIKNPDWRYRDAAVXAFGSILEGPEPNQLKPLVIQAXPTLIELXKD 425
Query: 336 PSVDVRKQTVWALGNV 351
PSV VR T W +G +
Sbjct: 426 PSVVVRDTTAWTVGRI 441
>pdb|3JWP|A Chain A, Crystal Structure Of Plasmodium Falciparum Sir2a
(Pf13_0152) In Complex With Amp
Length = 265
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 57 CDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLV 116
CD L+ ++ +S++ TNL CK+ K ++ +I+KT + + + C K +E+ V
Sbjct: 192 CDLLL-VIGTSSTVSTATNLCHFACKKKKKIVEINISKTYITNKXSDYHVCAKFSELTKV 250
Query: 117 DDVV 120
+++
Sbjct: 251 ANIL 254
>pdb|2Z5B|B Chain B, Crystal Structure Of A Novel Chaperone Complex For Yeast
20s Proteasome Assembly
Length = 179
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 573 HLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEA 632
HL V L D ADPK+ VC++ E +V + E+ +GT D Q++ L+ +
Sbjct: 91 HLSDYQVVTKLGD---SADPKVPVVCVQIAELYRRVILPEV-SGTMAQDNMQFSLLISMS 146
Query: 633 EGLEKIENLQSHDDN 647
+ + QS DDN
Sbjct: 147 SKIWRATKEQSADDN 161
>pdb|3ND2|A Chain A, Structure Of Yeast Importin-Beta (Kap95p)
Length = 861
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRK 342
V FVE + D + + A A +I G + + H A+P + L+ S+ V++
Sbjct: 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKE 429
Query: 343 QTVWALGNVA 352
T W +G +A
Sbjct: 430 TTAWCIGRIA 439
>pdb|2BPT|A Chain A, Structure Of The Nup1p:kap95p Complex
pdb|2BKU|B Chain B, Kap95p:rangtp Complex
pdb|2BKU|D Chain D, Kap95p:rangtp Complex
pdb|3EA5|B Chain B, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|D Chain D, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 861
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRK 342
V FVE + D + + A A +I G + + H A+P + L+ S+ V++
Sbjct: 370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKE 429
Query: 343 QTVWALGNVA 352
T W +G +A
Sbjct: 430 TTAWCIGRIA 439
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 20/106 (18%)
Query: 67 STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQ---D 123
+ SF+N LV+S C+ ++IA T L+ +++ D VDDV
Sbjct: 126 AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-------VDDVSGHWLSH 178
Query: 124 EVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMK 169
T+ L LN+ + + +S F +LE LV CPN+K
Sbjct: 179 FPDTYTSLVSLNISCLASEVS---------FSALERLVTR-CPNLK 214
>pdb|3BCT|A Chain A, The Armadillo Repeat Region From Murine Beta-Catenin
Length = 470
Score = 29.3 bits (64), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 20/96 (20%)
Query: 279 QSGVVPRFVEFLMR--QDY--------PQLQFKAAWALTNIASGTS----------ENTK 318
+ G +PR V+ L+R QD Q QF I G + N
Sbjct: 337 EQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRXEEIVEGCTGALHILARDVHNRI 396
Query: 319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGD 354
V+ +P+FV+LL SP ++++ L +A D
Sbjct: 397 VIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQD 432
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,787,349
Number of Sequences: 62578
Number of extensions: 733867
Number of successful extensions: 2488
Number of sequences better than 100.0: 69
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1656
Number of HSP's gapped (non-prelim): 158
length of query: 670
length of database: 14,973,337
effective HSP length: 105
effective length of query: 565
effective length of database: 8,402,647
effective search space: 4747495555
effective search space used: 4747495555
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)