Query 037562
Match_columns 670
No_of_seqs 553 out of 4232
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 13:32:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037562.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037562hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0166 Karyopherin (importin) 100.0 1.3E-56 2.9E-61 441.7 45.1 423 240-667 68-491 (514)
2 COG5064 SRP1 Karyopherin (impo 100.0 1E-55 2.2E-60 400.8 34.7 427 237-666 70-500 (526)
3 KOG0166 Karyopherin (importin) 100.0 5.5E-42 1.2E-46 338.5 30.2 389 218-611 88-490 (514)
4 COG5064 SRP1 Karyopherin (impo 100.0 1.1E-41 2.5E-46 309.5 22.4 383 221-608 96-497 (526)
5 PLN03200 cellulose synthase-in 100.0 7.5E-37 1.6E-41 346.4 44.3 439 204-667 162-769 (2102)
6 PLN03200 cellulose synthase-in 100.0 1.2E-35 2.6E-40 336.7 43.8 416 238-664 404-862 (2102)
7 KOG4224 Armadillo repeat prote 100.0 1.3E-31 2.7E-36 246.3 23.7 402 240-664 87-495 (550)
8 KOG4224 Armadillo repeat prote 100.0 6.8E-30 1.5E-34 235.0 26.6 361 238-609 126-495 (550)
9 PF05804 KAP: Kinesin-associat 99.9 1.9E-23 4.1E-28 219.9 38.9 381 251-660 262-647 (708)
10 PF05804 KAP: Kinesin-associat 99.9 1.1E-23 2.4E-28 221.5 33.3 361 238-613 290-655 (708)
11 KOG1048 Neural adherens juncti 99.8 7.5E-19 1.6E-23 180.4 26.7 368 282-667 234-689 (717)
12 KOG0168 Putative ubiquitin fus 99.8 5E-18 1.1E-22 173.2 28.6 391 238-645 167-655 (1051)
13 KOG1048 Neural adherens juncti 99.8 7.4E-17 1.6E-21 165.9 26.5 363 239-609 234-686 (717)
14 KOG2122 Beta-catenin-binding p 99.8 2.8E-16 6.2E-21 168.1 25.4 362 241-609 200-603 (2195)
15 PF10508 Proteasom_PSMB: Prote 99.7 2.5E-14 5.5E-19 150.2 37.0 367 284-663 41-421 (503)
16 KOG4500 Rho/Rac GTPase guanine 99.7 6.8E-16 1.5E-20 146.4 20.8 352 249-607 53-431 (604)
17 PF10508 Proteasom_PSMB: Prote 99.7 7.3E-14 1.6E-18 146.8 37.8 396 242-661 42-461 (503)
18 KOG1222 Kinesin associated pro 99.7 4.2E-14 9.1E-19 136.1 29.0 382 249-660 274-661 (791)
19 KOG4199 Uncharacterized conser 99.7 2.6E-14 5.6E-19 131.6 25.8 311 248-565 117-445 (461)
20 KOG4199 Uncharacterized conser 99.7 9.2E-14 2E-18 128.0 28.9 308 289-605 115-442 (461)
21 PRK09687 putative lyase; Provi 99.7 5.2E-15 1.1E-19 142.2 21.0 255 282-604 24-279 (280)
22 KOG4500 Rho/Rac GTPase guanine 99.7 2.5E-14 5.3E-19 135.9 24.9 403 238-656 87-513 (604)
23 KOG1222 Kinesin associated pro 99.7 9.1E-14 2E-18 133.8 27.7 360 238-613 304-669 (791)
24 KOG2122 Beta-catenin-binding p 99.7 9.9E-15 2.1E-19 156.6 21.7 345 209-565 214-602 (2195)
25 PRK09687 putative lyase; Provi 99.6 5.5E-14 1.2E-18 135.2 23.0 254 239-561 24-279 (280)
26 KOG2171 Karyopherin (importin) 99.6 1.9E-12 4.1E-17 138.6 32.8 363 236-608 116-550 (1075)
27 PRK13800 putative oxidoreducta 99.6 6.4E-13 1.4E-17 150.0 28.8 275 238-603 621-895 (897)
28 KOG1293 Proteins containing ar 99.6 5.1E-12 1.1E-16 127.2 29.0 406 242-663 13-534 (678)
29 PRK13800 putative oxidoreducta 99.6 1.4E-12 3.1E-17 147.2 28.4 277 280-659 620-896 (897)
30 KOG2171 Karyopherin (importin) 99.6 1.2E-11 2.7E-16 132.5 32.8 424 202-658 50-542 (1075)
31 PF04826 Arm_2: Armadillo-like 99.5 2.1E-12 4.5E-17 121.1 21.6 239 406-653 10-253 (254)
32 PF04826 Arm_2: Armadillo-like 99.5 4.5E-12 9.8E-17 118.9 21.1 196 278-480 9-206 (254)
33 PF01602 Adaptin_N: Adaptin N 99.4 1.3E-11 2.7E-16 133.8 22.7 359 239-662 80-444 (526)
34 KOG2023 Nuclear transport rece 99.4 1.2E-11 2.5E-16 124.2 19.0 349 243-609 95-507 (885)
35 KOG1293 Proteins containing ar 99.4 5.7E-11 1.2E-15 119.8 23.9 370 237-610 50-536 (678)
36 KOG2023 Nuclear transport rece 99.4 9.8E-12 2.1E-16 124.7 17.9 321 324-662 128-505 (885)
37 cd00256 VATPase_H VATPase_H, r 99.4 2.8E-10 6.1E-15 113.8 28.2 350 238-607 53-425 (429)
38 cd00020 ARM Armadillo/beta-cat 99.4 1.5E-11 3.2E-16 104.1 14.5 119 276-396 2-120 (120)
39 PTZ00429 beta-adaptin; Provisi 99.4 3.4E-09 7.3E-14 114.6 35.4 370 238-661 68-470 (746)
40 PF01602 Adaptin_N: Adaptin N 99.4 5.5E-10 1.2E-14 121.0 29.5 357 242-660 8-367 (526)
41 KOG1241 Karyopherin (importin) 99.3 3.3E-10 7.2E-15 115.9 23.9 355 204-572 145-538 (859)
42 cd00020 ARM Armadillo/beta-cat 99.3 3E-11 6.5E-16 102.2 13.2 118 446-564 3-120 (120)
43 PTZ00429 beta-adaptin; Provisi 99.3 3E-08 6.6E-13 107.3 37.9 294 238-565 32-327 (746)
44 PLN03210 Resistant to P. syrin 99.3 6.7E-12 1.5E-16 146.1 10.2 164 21-192 633-838 (1153)
45 cd00256 VATPase_H VATPase_H, r 99.3 1.6E-09 3.5E-14 108.4 25.0 345 281-661 53-424 (429)
46 KOG1241 Karyopherin (importin) 99.3 1.6E-10 3.5E-15 118.2 16.7 409 194-613 78-536 (859)
47 KOG0168 Putative ubiquitin fus 99.2 4.5E-09 9.7E-14 108.8 25.0 343 238-588 211-653 (1051)
48 PLN03210 Resistant to P. syrin 99.2 6.2E-11 1.3E-15 138.2 11.1 158 22-192 657-882 (1153)
49 KOG2759 Vacuolar H+-ATPase V1 99.1 2.6E-08 5.7E-13 95.9 24.5 349 238-607 65-438 (442)
50 KOG2759 Vacuolar H+-ATPase V1 99.1 1.6E-08 3.4E-13 97.4 21.2 312 205-522 82-438 (442)
51 KOG0946 ER-Golgi vesicle-tethe 99.1 2.6E-07 5.7E-12 95.4 30.5 325 282-612 23-404 (970)
52 KOG2160 Armadillo/beta-catenin 99.1 3.2E-08 6.9E-13 94.2 21.4 190 420-611 95-286 (342)
53 KOG1059 Vesicle coat complex A 99.1 2.9E-07 6.3E-12 94.2 28.5 217 240-479 146-365 (877)
54 KOG3665 ZYG-1-like serine/thre 99.0 3.5E-08 7.5E-13 106.6 23.3 492 23-561 84-694 (699)
55 KOG0211 Protein phosphatase 2A 99.0 1.1E-07 2.3E-12 102.0 23.2 418 203-659 232-661 (759)
56 KOG2160 Armadillo/beta-catenin 99.0 3.7E-08 8.1E-13 93.7 17.6 187 379-565 95-283 (342)
57 KOG1061 Vesicle coat complex A 98.9 2.3E-07 5.1E-12 96.4 22.8 373 238-661 49-452 (734)
58 KOG0946 ER-Golgi vesicle-tethe 98.9 1.8E-06 3.8E-11 89.6 27.7 327 233-565 17-400 (970)
59 KOG1242 Protein containing ada 98.9 9E-06 2E-10 83.0 31.1 316 282-612 97-449 (569)
60 KOG1062 Vesicle coat complex A 98.9 2E-06 4.4E-11 89.5 26.6 371 238-661 142-543 (866)
61 PF03224 V-ATPase_H_N: V-ATPas 98.9 6E-08 1.3E-12 96.2 15.5 227 326-555 57-305 (312)
62 KOG1517 Guanine nucleotide bin 98.9 3.5E-07 7.5E-12 97.3 21.2 318 204-532 370-742 (1387)
63 PF03224 V-ATPase_H_N: V-ATPas 98.9 7.1E-08 1.5E-12 95.8 15.6 228 368-598 57-305 (312)
64 KOG1062 Vesicle coat complex A 98.8 2.6E-06 5.7E-11 88.7 26.6 323 243-607 112-451 (866)
65 KOG0213 Splicing factor 3b, su 98.8 7.6E-07 1.6E-11 91.4 22.4 385 239-661 717-1141(1172)
66 COG5215 KAP95 Karyopherin (imp 98.8 4.8E-07 1E-11 90.1 20.0 356 240-612 135-534 (858)
67 COG5215 KAP95 Karyopherin (imp 98.8 1.2E-06 2.5E-11 87.5 21.4 394 202-610 147-588 (858)
68 KOG0213 Splicing factor 3b, su 98.8 7.3E-06 1.6E-10 84.4 27.1 387 240-660 638-1063(1172)
69 KOG3678 SARM protein (with ste 98.8 4.1E-07 8.9E-12 88.4 17.1 273 275-564 174-452 (832)
70 KOG1061 Vesicle coat complex A 98.8 5.6E-07 1.2E-11 93.6 18.6 303 237-565 85-416 (734)
71 KOG3665 ZYG-1-like serine/thre 98.7 3.7E-07 7.9E-12 98.8 17.8 554 48-661 84-696 (699)
72 KOG4413 26S proteasome regulat 98.7 2.5E-05 5.5E-10 72.9 26.9 342 240-586 84-460 (524)
73 KOG1060 Vesicle coat complex A 98.7 9.6E-06 2.1E-10 84.3 26.1 329 239-607 109-496 (968)
74 KOG0212 Uncharacterized conser 98.7 5.7E-07 1.2E-11 89.6 16.4 323 278-611 81-410 (675)
75 KOG1824 TATA-binding protein-i 98.7 5.6E-06 1.2E-10 87.5 24.1 381 241-661 571-1035(1233)
76 COG5369 Uncharacterized conser 98.7 1.7E-07 3.8E-12 92.6 12.3 310 341-660 406-739 (743)
77 TIGR02270 conserved hypothetic 98.7 5.1E-06 1.1E-10 84.2 22.2 243 238-565 54-297 (410)
78 KOG3678 SARM protein (with ste 98.7 1.3E-06 2.7E-11 85.1 16.5 268 238-522 180-452 (832)
79 KOG1059 Vesicle coat complex A 98.6 9.8E-06 2.1E-10 83.4 23.4 355 205-608 8-366 (877)
80 KOG1824 TATA-binding protein-i 98.6 1.7E-05 3.8E-10 84.0 25.8 354 242-610 9-405 (1233)
81 KOG1789 Endocytosis protein RM 98.6 4.7E-05 1E-09 81.5 28.1 366 254-643 1741-2140(2235)
82 COG5181 HSH155 U2 snRNP splice 98.6 2.1E-07 4.5E-12 93.4 9.7 264 324-607 604-870 (975)
83 KOG4413 26S proteasome regulat 98.6 1.8E-05 3.9E-10 73.9 20.7 348 203-561 96-481 (524)
84 TIGR02270 conserved hypothetic 98.6 1.7E-05 3.7E-10 80.4 22.5 242 282-607 55-296 (410)
85 KOG1060 Vesicle coat complex A 98.5 6.5E-05 1.4E-09 78.3 26.4 251 239-522 72-350 (968)
86 KOG1789 Endocytosis protein RM 98.5 0.00018 3.9E-09 77.2 29.1 367 204-589 1740-2141(2235)
87 COG5181 HSH155 U2 snRNP splice 98.5 1.4E-05 3E-10 80.8 19.9 337 282-661 605-946 (975)
88 KOG4646 Uncharacterized conser 98.5 2.3E-06 4.9E-11 68.9 11.4 154 493-662 17-170 (173)
89 KOG2973 Uncharacterized conser 98.5 3.2E-05 6.9E-10 71.9 20.1 271 240-522 5-315 (353)
90 KOG1517 Guanine nucleotide bin 98.5 4.5E-06 9.7E-11 89.1 16.5 248 238-489 472-742 (1387)
91 COG1413 FOG: HEAT repeat [Ener 98.5 4.7E-05 1E-09 77.1 23.9 251 238-565 43-305 (335)
92 KOG0212 Uncharacterized conser 98.5 2.1E-05 4.7E-10 78.7 20.2 318 238-567 84-409 (675)
93 COG1413 FOG: HEAT repeat [Ener 98.5 8E-05 1.7E-09 75.4 25.1 249 281-606 43-303 (335)
94 PRK15386 type III secretion pr 98.5 4.6E-07 9.9E-12 89.9 8.3 135 23-192 53-190 (426)
95 KOG2973 Uncharacterized conser 98.4 0.00013 2.9E-09 67.8 23.0 270 368-662 5-315 (353)
96 PF14664 RICTOR_N: Rapamycin-i 98.4 9.8E-05 2.1E-09 74.1 23.5 308 325-661 26-363 (371)
97 KOG2259 Uncharacterized conser 98.4 6.8E-06 1.5E-10 83.7 14.3 219 371-608 203-440 (823)
98 KOG1242 Protein containing ada 98.4 0.0001 2.2E-09 75.6 22.7 346 283-660 57-442 (569)
99 PF05536 Neurochondrin: Neuroc 98.4 0.00062 1.4E-08 72.3 29.4 381 238-640 5-458 (543)
100 PLN00113 leucine-rich repeat r 98.4 7.1E-07 1.5E-11 104.3 7.8 38 153-190 306-343 (968)
101 PLN00113 leucine-rich repeat r 98.3 9.9E-07 2.1E-11 103.1 7.7 40 151-190 328-367 (968)
102 KOG0211 Protein phosphatase 2A 98.2 0.00021 4.6E-09 77.2 22.7 382 244-663 243-626 (759)
103 COG5369 Uncharacterized conser 98.2 6.9E-06 1.5E-10 81.6 9.7 263 300-563 407-740 (743)
104 KOG1058 Vesicle coat complex C 98.2 0.00053 1.1E-08 71.4 22.5 359 241-665 102-466 (948)
105 KOG2259 Uncharacterized conser 98.2 7E-05 1.5E-09 76.6 16.0 254 326-604 200-472 (823)
106 PF14664 RICTOR_N: Rapamycin-i 98.1 0.00029 6.2E-09 70.8 19.9 318 282-609 26-366 (371)
107 KOG4646 Uncharacterized conser 98.1 5E-05 1.1E-09 61.3 11.4 130 238-375 16-146 (173)
108 COG5231 VMA13 Vacuolar H+-ATPa 98.1 0.00018 3.9E-09 67.1 16.7 239 411-663 152-429 (432)
109 KOG1077 Vesicle coat complex A 98.1 0.0063 1.4E-07 63.3 28.1 347 284-664 114-490 (938)
110 PF12460 MMS19_C: RNAPII trans 98.1 0.0033 7.2E-08 65.3 27.1 348 240-610 1-397 (415)
111 COG5231 VMA13 Vacuolar H+-ATPa 98.1 0.00052 1.1E-08 64.2 18.3 230 289-522 157-428 (432)
112 KOG1943 Beta-tubulin folding c 98.1 0.0093 2E-07 65.3 30.2 342 238-608 341-706 (1133)
113 COG5240 SEC21 Vesicle coat com 98.1 0.00035 7.6E-09 70.4 18.3 281 248-564 274-555 (898)
114 KOG1240 Protein kinase contain 98.1 0.00013 2.8E-09 79.8 16.3 294 283-609 424-727 (1431)
115 PF00514 Arm: Armadillo/beta-c 98.0 9.4E-06 2E-10 52.7 4.8 40 313-352 1-40 (41)
116 KOG0915 Uncharacterized conser 98.0 0.0058 1.3E-07 69.1 28.1 288 282-576 999-1318(1702)
117 PRK15386 type III secretion pr 97.9 1.3E-05 2.8E-10 79.9 5.8 130 45-209 50-183 (426)
118 COG5240 SEC21 Vesicle coat com 97.9 0.0042 9.1E-08 63.0 23.0 347 250-660 202-553 (898)
119 KOG2120 SCF ubiquitin ligase, 97.9 1.4E-06 3.1E-11 80.4 -1.0 140 20-167 232-375 (419)
120 COG5096 Vesicle coat complex, 97.9 0.0077 1.7E-07 64.9 26.5 219 238-479 55-274 (757)
121 KOG0915 Uncharacterized conser 97.9 0.0025 5.4E-08 71.9 23.5 342 242-601 822-1196(1702)
122 KOG4535 HEAT and armadillo rep 97.9 0.0005 1.1E-08 67.9 16.2 398 243-658 111-599 (728)
123 PF13646 HEAT_2: HEAT repeats; 97.9 4.1E-05 8.8E-10 60.1 6.5 87 283-392 1-88 (88)
124 KOG1058 Vesicle coat complex C 97.9 0.0012 2.5E-08 69.0 18.3 320 239-610 135-466 (948)
125 KOG1077 Vesicle coat complex A 97.9 0.009 2E-07 62.2 24.3 297 240-564 113-433 (938)
126 PF00514 Arm: Armadillo/beta-c 97.8 3E-05 6.4E-10 50.4 4.5 41 524-564 1-41 (41)
127 PF12348 CLASP_N: CLASP N term 97.8 0.00028 6E-09 67.0 13.1 189 248-444 17-213 (228)
128 PF10165 Ric8: Guanine nucleot 97.8 0.0036 7.8E-08 65.1 22.2 254 272-526 13-341 (446)
129 KOG1991 Nuclear transport rece 97.8 0.023 4.9E-07 61.9 27.9 357 281-658 410-796 (1010)
130 KOG1240 Protein kinase contain 97.8 0.0008 1.7E-08 73.8 17.1 292 326-660 424-723 (1431)
131 PF05536 Neurochondrin: Neuroc 97.8 0.0016 3.4E-08 69.3 18.6 236 282-522 6-261 (543)
132 PRK15370 E3 ubiquitin-protein 97.8 3.7E-05 8.1E-10 84.4 6.6 147 23-190 221-378 (754)
133 PF12348 CLASP_N: CLASP N term 97.8 0.00024 5.2E-09 67.4 11.3 185 459-661 16-205 (228)
134 KOG4535 HEAT and armadillo rep 97.7 0.00015 3.3E-09 71.4 9.5 297 296-603 269-599 (728)
135 KOG1943 Beta-tubulin folding c 97.7 0.02 4.4E-07 62.8 26.0 260 281-564 341-611 (1133)
136 PF13646 HEAT_2: HEAT repeats; 97.7 5.2E-05 1.1E-09 59.5 5.4 86 240-349 1-88 (88)
137 KOG2734 Uncharacterized conser 97.7 0.014 3E-07 57.5 21.9 222 237-459 124-370 (536)
138 KOG4658 Apoptotic ATPase [Sign 97.7 1.7E-05 3.7E-10 88.5 2.3 126 44-174 714-848 (889)
139 KOG2734 Uncharacterized conser 97.7 0.015 3.1E-07 57.4 21.6 238 260-502 106-371 (536)
140 KOG0567 HEAT repeat-containing 97.7 0.0029 6.2E-08 58.0 15.6 224 240-522 38-280 (289)
141 KOG2062 26S proteasome regulat 97.7 0.0015 3.1E-08 68.2 15.2 262 282-593 414-680 (929)
142 KOG0567 HEAT repeat-containing 97.6 0.01 2.2E-07 54.5 18.3 224 368-660 38-278 (289)
143 PF12755 Vac14_Fab1_bd: Vacuol 97.6 0.00037 8E-09 54.8 8.0 95 509-607 2-96 (97)
144 PF10165 Ric8: Guanine nucleot 97.6 0.014 3E-07 60.9 22.0 260 211-481 3-339 (446)
145 PF13513 HEAT_EZ: HEAT-like re 97.6 0.00012 2.7E-09 51.2 4.6 55 507-562 1-55 (55)
146 KOG1248 Uncharacterized conser 97.6 0.039 8.5E-07 61.4 25.3 238 370-611 657-902 (1176)
147 KOG2274 Predicted importin 9 [ 97.6 0.016 3.5E-07 62.3 21.6 309 249-566 461-782 (1005)
148 PRK15370 E3 ubiquitin-protein 97.5 0.00013 2.8E-09 80.3 6.5 140 23-189 200-356 (754)
149 KOG1078 Vesicle coat complex C 97.5 0.0041 8.9E-08 65.5 16.6 285 282-606 246-531 (865)
150 KOG1078 Vesicle coat complex C 97.5 0.0094 2E-07 63.0 18.9 284 241-564 248-532 (865)
151 COG5096 Vesicle coat complex, 97.5 0.16 3.6E-06 55.1 28.5 168 247-438 28-196 (757)
152 PF13513 HEAT_EZ: HEAT-like re 97.4 0.00031 6.8E-09 49.1 4.9 55 296-351 1-55 (55)
153 KOG1020 Sister chromatid cohes 97.4 0.22 4.8E-06 57.1 28.5 143 240-398 818-962 (1692)
154 KOG4341 F-box protein containi 97.4 7.4E-06 1.6E-10 79.4 -4.8 90 23-112 139-231 (483)
155 PF09759 Atx10homo_assoc: Spin 97.4 0.001 2.2E-08 52.3 7.8 68 298-365 2-71 (102)
156 KOG4658 Apoptotic ATPase [Sign 97.3 8.4E-05 1.8E-09 83.1 1.9 79 23-105 572-650 (889)
157 KOG1991 Nuclear transport rece 97.3 0.094 2E-06 57.3 23.7 341 252-610 432-803 (1010)
158 PRK15387 E3 ubiquitin-protein 97.2 0.00077 1.7E-08 74.0 8.0 50 23-81 223-272 (788)
159 KOG0617 Ras suppressor protein 97.2 3E-05 6.5E-10 65.7 -2.4 140 33-188 43-182 (264)
160 smart00185 ARM Armadillo/beta- 97.2 0.00094 2E-08 43.3 5.2 39 314-352 2-40 (41)
161 PF12460 MMS19_C: RNAPII trans 97.2 0.13 2.8E-06 53.5 23.7 301 251-566 56-396 (415)
162 PF13855 LRR_8: Leucine rich r 97.2 0.00042 9.2E-09 49.7 3.8 57 48-107 2-59 (61)
163 KOG4151 Myosin assembly protei 97.2 0.012 2.6E-07 62.6 15.6 240 356-603 494-737 (748)
164 PF08569 Mo25: Mo25-like; Int 97.2 0.13 2.8E-06 50.9 22.0 200 407-610 75-286 (335)
165 KOG2025 Chromosome condensatio 97.2 0.044 9.5E-07 57.5 18.8 129 383-519 62-190 (892)
166 KOG2274 Predicted importin 9 [ 97.2 0.12 2.6E-06 56.0 22.3 229 296-532 464-699 (1005)
167 KOG2032 Uncharacterized conser 97.1 0.22 4.8E-06 50.3 22.8 257 377-661 268-530 (533)
168 KOG0414 Chromosome condensatio 97.1 0.47 1E-05 53.2 27.2 134 494-656 921-1058(1251)
169 KOG1248 Uncharacterized conser 97.1 0.064 1.4E-06 59.8 20.6 241 287-533 659-910 (1176)
170 PF05918 API5: Apoptosis inhib 97.1 0.043 9.3E-07 57.5 18.5 294 285-610 27-348 (556)
171 PF09759 Atx10homo_assoc: Spin 97.1 0.0035 7.7E-08 49.3 8.2 68 466-533 2-70 (102)
172 KOG3207 Beta-tubulin folding c 97.1 0.00055 1.2E-08 67.2 4.3 142 44-199 169-320 (505)
173 PF13855 LRR_8: Leucine rich r 97.1 0.00085 1.8E-08 48.1 4.1 58 23-82 2-60 (61)
174 PF12717 Cnd1: non-SMC mitotic 97.0 0.03 6.5E-07 50.4 14.9 93 421-523 1-93 (178)
175 PF08569 Mo25: Mo25-like; Int 97.0 0.081 1.8E-06 52.4 18.9 205 444-661 70-282 (335)
176 PF11841 DUF3361: Domain of un 97.0 0.023 5E-07 48.7 13.0 132 443-575 4-142 (160)
177 KOG2120 SCF ubiquitin ligase, 97.0 4.6E-05 1E-09 70.7 -3.7 136 47-190 234-374 (419)
178 KOG0444 Cytoskeletal regulator 97.0 9.9E-05 2.1E-09 75.5 -1.7 163 23-191 174-374 (1255)
179 PF05004 IFRD: Interferon-rela 97.0 0.15 3.3E-06 50.2 20.4 195 412-611 47-261 (309)
180 PF05004 IFRD: Interferon-rela 96.9 0.07 1.5E-06 52.6 17.5 191 240-436 45-256 (309)
181 PRK15387 E3 ubiquitin-protein 96.9 0.002 4.4E-08 70.8 7.4 141 23-188 202-351 (788)
182 PF12717 Cnd1: non-SMC mitotic 96.9 0.029 6.2E-07 50.6 13.6 91 296-397 2-93 (178)
183 PF11841 DUF3361: Domain of un 96.9 0.033 7.1E-07 47.8 12.9 126 359-484 4-136 (160)
184 smart00185 ARM Armadillo/beta- 96.9 0.0027 5.8E-08 41.1 5.0 39 526-564 3-41 (41)
185 KOG1967 DNA repair/transcripti 96.9 0.0093 2E-07 64.2 11.5 190 325-520 816-1022(1030)
186 PF12755 Vac14_Fab1_bd: Vacuol 96.8 0.0047 1E-07 48.7 7.0 91 384-476 3-93 (97)
187 KOG4653 Uncharacterized conser 96.8 0.029 6.2E-07 60.1 13.9 227 283-520 729-962 (982)
188 KOG4151 Myosin assembly protei 96.8 0.016 3.5E-07 61.7 12.2 241 313-560 493-737 (748)
189 cd00116 LRR_RI Leucine-rich re 96.7 0.00024 5.3E-09 71.5 -1.4 161 21-189 80-260 (319)
190 PF14580 LRR_9: Leucine-rich r 96.7 0.00098 2.1E-08 59.1 2.3 103 23-141 20-125 (175)
191 PF04078 Rcd1: Cell differenti 96.6 0.053 1.2E-06 50.5 13.2 222 421-660 8-260 (262)
192 KOG2032 Uncharacterized conser 96.6 0.15 3.2E-06 51.5 17.0 270 323-607 253-531 (533)
193 PF12719 Cnd3: Nuclear condens 96.6 0.11 2.3E-06 51.4 16.3 172 407-590 25-209 (298)
194 KOG4341 F-box protein containi 96.6 0.0007 1.5E-08 66.2 0.8 165 23-193 269-440 (483)
195 PRK14707 hypothetical protein; 96.6 2.6 5.5E-05 50.7 28.4 351 283-654 165-521 (2710)
196 KOG2062 26S proteasome regulat 96.6 0.21 4.6E-06 52.9 18.4 235 238-522 413-653 (929)
197 KOG4653 Uncharacterized conser 96.6 0.051 1.1E-06 58.3 14.3 225 327-562 730-962 (982)
198 KOG1020 Sister chromatid cohes 96.6 2.3 4.9E-05 49.4 27.3 141 281-436 816-959 (1692)
199 COG5116 RPN2 26S proteasome re 96.5 0.046 1E-06 55.7 13.0 250 296-591 425-675 (926)
200 PRK14707 hypothetical protein; 96.5 2.9 6.2E-05 50.4 28.0 399 240-661 165-570 (2710)
201 KOG1947 Leucine rich repeat pr 96.4 0.00055 1.2E-08 73.5 -1.4 90 21-110 213-308 (482)
202 KOG0414 Chromosome condensatio 96.4 0.1 2.3E-06 58.1 15.4 145 406-566 917-1066(1251)
203 cd00116 LRR_RI Leucine-rich re 96.4 0.00038 8.2E-09 70.1 -2.7 82 23-108 24-119 (319)
204 KOG3036 Protein involved in ce 96.4 0.5 1.1E-05 43.3 17.1 139 468-609 97-249 (293)
205 PF11698 V-ATPase_H_C: V-ATPas 96.3 0.018 3.8E-07 46.7 7.2 70 579-661 44-114 (119)
206 KOG1967 DNA repair/transcripti 96.3 0.016 3.4E-07 62.4 8.7 185 284-475 818-1020(1030)
207 PF05918 API5: Apoptosis inhib 96.3 0.18 3.9E-06 53.0 16.0 132 327-477 26-160 (556)
208 KOG4194 Membrane glycoprotein 96.2 0.0015 3.3E-08 66.7 0.9 63 40-105 286-349 (873)
209 PF14580 LRR_9: Leucine-rich r 96.2 0.0032 6.8E-08 55.9 2.6 131 45-193 17-154 (175)
210 KOG3036 Protein involved in ce 96.2 0.24 5.2E-06 45.3 14.3 138 512-660 98-245 (293)
211 PF12719 Cnd3: Nuclear condens 96.2 0.057 1.2E-06 53.3 11.7 108 453-566 30-145 (298)
212 KOG1947 Leucine rich repeat pr 96.2 0.00063 1.4E-08 73.0 -2.5 118 70-191 187-307 (482)
213 KOG1243 Protein kinase [Genera 96.1 0.43 9.3E-06 50.6 17.8 192 405-611 327-519 (690)
214 PF11864 DUF3384: Domain of un 96.1 2.4 5.1E-05 44.9 27.0 285 253-563 5-329 (464)
215 PF04078 Rcd1: Cell differenti 96.1 0.13 2.8E-06 48.0 12.4 194 463-663 8-219 (262)
216 KOG2956 CLIP-associating prote 96.0 0.32 6.9E-06 48.9 15.5 176 337-522 300-477 (516)
217 PF11698 V-ATPase_H_C: V-ATPas 96.0 0.0078 1.7E-07 48.7 3.7 71 536-607 44-115 (119)
218 PF06025 DUF913: Domain of Unk 96.0 0.66 1.4E-05 47.2 18.3 192 301-504 3-208 (379)
219 PF13764 E3_UbLigase_R4: E3 ub 95.9 2.8 6.1E-05 46.7 23.5 206 322-545 115-360 (802)
220 KOG1566 Conserved protein Mo25 95.8 1.4 3E-05 42.2 17.7 203 360-566 73-288 (342)
221 KOG3864 Uncharacterized conser 95.8 0.0026 5.6E-08 56.1 0.0 65 45-110 123-189 (221)
222 KOG3207 Beta-tubulin folding c 95.7 0.0045 9.7E-08 61.1 1.3 153 22-186 172-333 (505)
223 KOG0617 Ras suppressor protein 95.7 0.0011 2.4E-08 56.4 -2.5 128 46-188 32-159 (264)
224 KOG2956 CLIP-associating prote 95.6 0.66 1.4E-05 46.7 15.9 173 382-565 302-478 (516)
225 COG5656 SXM1 Importin, protein 95.6 1.8 4E-05 46.3 19.5 298 256-567 388-714 (970)
226 PF08045 CDC14: Cell division 95.6 0.29 6.3E-06 46.0 12.6 103 551-667 107-212 (257)
227 PF11701 UNC45-central: Myosin 95.4 0.091 2E-06 46.0 8.5 144 412-562 7-157 (157)
228 KOG2025 Chromosome condensatio 95.4 0.75 1.6E-05 48.8 15.8 107 279-392 83-189 (892)
229 PF11701 UNC45-central: Myosin 95.3 0.1 2.2E-06 45.7 8.5 143 453-603 6-155 (157)
230 PF14668 RICTOR_V: Rapamycin-i 95.3 0.15 3.2E-06 37.5 7.9 66 510-578 4-70 (73)
231 KOG1525 Sister chromatid cohes 95.2 4.7 0.0001 47.3 22.9 93 466-565 238-330 (1266)
232 PF08045 CDC14: Cell division 95.1 0.39 8.4E-06 45.2 11.9 100 509-609 107-209 (257)
233 KOG1243 Protein kinase [Genera 95.1 0.5 1.1E-05 50.2 13.7 190 447-663 327-516 (690)
234 KOG2999 Regulator of Rac1, req 95.1 3.5 7.6E-05 42.6 19.0 158 240-401 85-247 (713)
235 COG5116 RPN2 26S proteasome re 95.0 0.21 4.5E-06 51.2 10.5 154 285-462 520-674 (926)
236 PF13764 E3_UbLigase_R4: E3 ub 95.0 4.1 8.9E-05 45.5 21.3 241 407-664 116-408 (802)
237 KOG4194 Membrane glycoprotein 94.9 0.046 9.9E-07 56.4 5.7 163 23-203 79-246 (873)
238 KOG0444 Cytoskeletal regulator 94.9 0.0031 6.8E-08 64.9 -2.4 147 23-188 101-254 (1255)
239 KOG3864 Uncharacterized conser 94.9 0.0032 6.9E-08 55.6 -2.1 63 128-190 124-187 (221)
240 KOG1820 Microtubule-associated 94.9 0.61 1.3E-05 51.7 14.6 189 325-522 254-443 (815)
241 PF02985 HEAT: HEAT repeat; I 94.9 0.039 8.5E-07 32.9 3.1 28 283-311 2-29 (31)
242 PF02985 HEAT: HEAT repeat; I 94.8 0.049 1.1E-06 32.5 3.4 29 409-437 1-29 (31)
243 KOG0413 Uncharacterized conser 94.7 8.8 0.00019 42.7 21.8 131 507-665 945-1076(1529)
244 PF11865 DUF3385: Domain of un 94.7 0.36 7.9E-06 42.3 10.1 146 282-436 11-156 (160)
245 PF12530 DUF3730: Protein of u 94.6 3.6 7.8E-05 38.9 17.3 202 283-504 2-215 (234)
246 COG5218 YCG1 Chromosome conden 94.6 1.7 3.6E-05 45.2 15.5 110 403-518 86-195 (885)
247 PF12799 LRR_4: Leucine Rich r 94.4 0.034 7.4E-07 36.4 2.3 15 93-107 20-34 (44)
248 PF06025 DUF913: Domain of Unk 94.3 2.6 5.7E-05 42.9 16.6 191 343-548 3-209 (379)
249 KOG0618 Serine/threonine phosp 94.2 0.0086 1.9E-07 64.9 -1.4 110 64-190 376-487 (1081)
250 KOG1566 Conserved protein Mo25 94.0 6.2 0.00013 38.0 18.0 205 443-661 72-285 (342)
251 KOG1820 Microtubule-associated 93.9 0.77 1.7E-05 51.0 12.7 193 408-610 253-446 (815)
252 PLN03150 hypothetical protein; 93.9 0.09 1.9E-06 57.8 5.8 57 49-107 420-476 (623)
253 PF12799 LRR_4: Leucine Rich r 93.8 0.069 1.5E-06 35.0 2.8 39 47-87 1-39 (44)
254 KOG1525 Sister chromatid cohes 93.7 5.6 0.00012 46.7 19.3 148 450-608 259-406 (1266)
255 PF14500 MMS19_N: Dos2-interac 93.7 7 0.00015 37.5 17.9 223 328-567 3-240 (262)
256 COG5098 Chromosome condensatio 93.5 0.78 1.7E-05 48.4 11.0 167 420-609 908-1078(1128)
257 PF14668 RICTOR_V: Rapamycin-i 93.5 0.41 9E-06 35.2 6.7 67 255-324 4-70 (73)
258 PF12530 DUF3730: Protein of u 93.3 7.4 0.00016 36.8 17.5 139 411-565 3-152 (234)
259 PF13504 LRR_7: Leucine rich r 93.3 0.056 1.2E-06 27.0 1.4 17 155-172 1-17 (17)
260 KOG2982 Uncharacterized conser 93.3 0.055 1.2E-06 50.9 2.4 151 44-203 94-247 (418)
261 PLN03076 ARF guanine nucleotid 93.2 27 0.00058 43.2 24.5 264 249-522 1148-1489(1780)
262 PF13251 DUF4042: Domain of un 93.1 1.8 3.9E-05 38.7 11.5 141 298-438 2-175 (182)
263 KOG1949 Uncharacterized conser 93.0 2.8 6.2E-05 44.6 14.1 189 409-605 175-368 (1005)
264 PF07814 WAPL: Wings apart-lik 92.9 7 0.00015 39.7 17.0 274 283-565 23-356 (361)
265 KOG2999 Regulator of Rac1, req 92.9 3.9 8.6E-05 42.3 14.6 167 408-576 83-254 (713)
266 KOG1993 Nuclear transport rece 92.9 17 0.00037 39.7 21.2 342 253-608 502-865 (978)
267 PF07814 WAPL: Wings apart-lik 92.8 6.2 0.00013 40.1 16.5 241 326-576 23-310 (361)
268 COG5656 SXM1 Importin, protein 92.8 17 0.00036 39.5 24.2 281 323-612 407-716 (970)
269 PF01603 B56: Protein phosphat 92.8 2.2 4.7E-05 44.2 13.4 242 276-531 128-379 (409)
270 PLN03150 hypothetical protein; 92.8 0.15 3.2E-06 56.1 5.2 104 73-188 420-524 (623)
271 KOG2611 Neurochondrin/leucine- 92.4 11 0.00023 38.5 16.7 189 285-478 15-224 (698)
272 PF01347 Vitellogenin_N: Lipop 92.3 4.1 8.9E-05 45.2 15.9 150 380-558 448-616 (618)
273 PF11707 Npa1: Ribosome 60S bi 92.2 14 0.0003 37.1 21.5 159 452-610 58-240 (330)
274 KOG1949 Uncharacterized conser 92.1 5.1 0.00011 42.8 14.6 192 453-665 177-374 (1005)
275 PF14500 MMS19_N: Dos2-interac 92.0 7.6 0.00016 37.3 15.1 214 286-522 4-237 (262)
276 KOG2137 Protein kinase [Signal 91.9 1.6 3.4E-05 46.8 11.0 234 204-463 288-521 (700)
277 PF06371 Drf_GBD: Diaphanous G 91.9 0.88 1.9E-05 41.4 8.5 111 239-352 67-186 (187)
278 COG5218 YCG1 Chromosome conden 91.8 15 0.00032 38.6 17.1 107 238-355 91-198 (885)
279 PF04063 DUF383: Domain of unk 91.7 0.88 1.9E-05 41.1 7.9 127 333-460 4-157 (192)
280 PF13251 DUF4042: Domain of un 91.6 3.6 7.9E-05 36.7 11.5 145 465-609 1-176 (182)
281 PF01347 Vitellogenin_N: Lipop 91.6 5.6 0.00012 44.2 15.9 199 282-515 396-615 (618)
282 PF08506 Cse1: Cse1; InterPro 91.6 13 0.00029 37.7 17.1 215 423-657 111-370 (370)
283 cd03572 ENTH_epsin_related ENT 91.5 3 6.6E-05 34.3 10.0 101 547-664 13-121 (122)
284 PF04063 DUF383: Domain of unk 91.3 2.1 4.6E-05 38.7 9.9 114 459-576 4-142 (192)
285 KOG1832 HIV-1 Vpr-binding prot 91.3 4.4 9.6E-05 44.4 13.4 318 249-576 364-783 (1516)
286 KOG2933 Uncharacterized conser 91.3 0.78 1.7E-05 43.7 7.2 139 452-605 90-232 (334)
287 smart00638 LPD_N Lipoprotein N 91.2 19 0.00041 39.5 19.3 134 368-520 395-543 (574)
288 KOG0472 Leucine-rich repeat pr 91.2 0.011 2.4E-07 57.8 -5.1 36 153-189 250-285 (565)
289 PLN03076 ARF guanine nucleotid 91.1 18 0.00038 44.6 19.8 269 335-609 1148-1491(1780)
290 KOG2611 Neurochondrin/leucine- 91.0 20 0.00044 36.7 18.1 189 242-435 15-223 (698)
291 smart00638 LPD_N Lipoprotein N 91.0 8.1 0.00018 42.4 16.2 161 325-514 394-570 (574)
292 KOG0618 Serine/threonine phosp 91.0 0.029 6.4E-07 61.0 -2.6 84 23-113 384-467 (1081)
293 PF12231 Rif1_N: Rap1-interact 90.9 21 0.00045 36.6 19.7 266 337-608 59-353 (372)
294 KOG1848 Uncharacterized conser 90.8 19 0.0004 42.1 18.2 99 334-437 852-958 (1610)
295 PF12830 Nipped-B_C: Sister ch 90.8 8.6 0.00019 34.9 13.5 146 240-398 10-169 (187)
296 PF01603 B56: Protein phosphat 90.8 7.5 0.00016 40.3 14.7 232 239-484 134-375 (409)
297 KOG2123 Uncharacterized conser 90.7 0.024 5.3E-07 52.7 -3.0 77 23-107 20-98 (388)
298 KOG2137 Protein kinase [Signal 90.7 4.8 0.00011 43.2 13.1 113 489-610 386-499 (700)
299 cd03567 VHS_GGA VHS domain fam 90.7 2.2 4.9E-05 36.2 8.9 74 536-609 39-118 (139)
300 KOG2933 Uncharacterized conser 90.6 1.7 3.7E-05 41.5 8.8 146 407-565 87-235 (334)
301 COG5209 RCD1 Uncharacterized p 90.6 2.3 5E-05 38.4 9.1 115 512-637 119-238 (315)
302 PF08506 Cse1: Cse1; InterPro 90.3 19 0.00041 36.6 16.7 148 445-602 205-370 (370)
303 cd03568 VHS_STAM VHS domain fa 90.2 1.4 3E-05 37.8 7.3 74 536-609 38-112 (144)
304 KOG1822 Uncharacterized conser 89.9 39 0.00084 41.1 20.2 232 282-521 877-1126(2067)
305 cd03569 VHS_Hrs_Vps27p VHS dom 89.5 3.2 6.9E-05 35.6 9.0 74 536-609 42-116 (142)
306 PF10363 DUF2435: Protein of u 89.5 1.6 3.6E-05 34.0 6.6 84 452-546 5-88 (92)
307 KOG1993 Nuclear transport rece 89.2 39 0.00084 37.2 27.9 317 276-608 483-813 (978)
308 PF10363 DUF2435: Protein of u 88.7 2 4.4E-05 33.4 6.6 84 239-334 4-87 (92)
309 KOG1848 Uncharacterized conser 88.6 14 0.0003 43.0 15.2 253 380-661 855-1131(1610)
310 KOG0472 Leucine-rich repeat pr 88.6 0.026 5.6E-07 55.3 -4.7 136 45-190 158-308 (565)
311 PF11864 DUF3384: Domain of un 88.2 38 0.00083 35.9 27.5 252 251-521 42-329 (464)
312 PF13001 Ecm29: Proteasome sta 88.1 41 0.00089 36.0 24.3 149 506-667 334-493 (501)
313 COG5098 Chromosome condensatio 88.1 43 0.00092 36.2 24.8 112 494-609 301-417 (1128)
314 COG4886 Leucine-rich repeat (L 88.0 0.38 8.2E-06 49.9 2.9 153 23-188 117-286 (394)
315 KOG2005 26S proteasome regulat 87.8 31 0.00066 37.0 16.0 288 239-570 416-710 (878)
316 KOG1788 Uncharacterized conser 87.7 37 0.00081 38.5 17.1 395 247-660 476-935 (2799)
317 cd03561 VHS VHS domain family; 87.5 4.7 0.0001 34.1 8.8 75 536-610 38-115 (133)
318 PF00560 LRR_1: Leucine Rich R 87.5 0.37 8.1E-06 25.9 1.4 18 156-174 1-18 (22)
319 COG5209 RCD1 Uncharacterized p 87.0 3.1 6.8E-05 37.6 7.5 137 469-608 119-269 (315)
320 PF11865 DUF3385: Domain of un 86.9 9.3 0.0002 33.5 10.5 146 406-563 8-156 (160)
321 KOG2739 Leucine-rich acidic nu 86.7 0.34 7.5E-06 45.0 1.5 110 46-168 42-156 (260)
322 KOG2123 Uncharacterized conser 86.2 0.13 2.7E-06 48.1 -1.5 54 46-105 18-71 (388)
323 PF11707 Npa1: Ribosome 60S bi 86.2 39 0.00085 33.9 20.2 159 494-662 58-237 (330)
324 smart00288 VHS Domain present 86.0 6.4 0.00014 33.3 8.8 74 536-609 38-113 (133)
325 PF12830 Nipped-B_C: Sister ch 85.7 24 0.00052 32.0 12.9 71 282-358 9-79 (187)
326 KOG0413 Uncharacterized conser 85.3 2.9 6.2E-05 46.2 7.5 127 466-609 947-1075(1529)
327 PF12031 DUF3518: Domain of un 85.0 2.3 5.1E-05 39.1 5.8 84 252-337 138-229 (257)
328 PF06371 Drf_GBD: Diaphanous G 84.9 2.4 5.2E-05 38.5 6.2 72 407-478 106-186 (187)
329 cd03569 VHS_Hrs_Vps27p VHS dom 84.6 3.4 7.3E-05 35.4 6.5 74 238-311 41-114 (142)
330 cd03568 VHS_STAM VHS domain fa 84.4 3.5 7.6E-05 35.4 6.5 74 238-311 37-110 (144)
331 PF08324 PUL: PUL domain; Int 84.2 14 0.00031 35.7 11.6 144 297-442 78-236 (268)
332 smart00367 LRR_CC Leucine-rich 84.0 0.64 1.4E-05 26.2 1.2 16 154-169 1-16 (26)
333 KOG1992 Nuclear export recepto 83.6 59 0.0013 36.0 16.1 185 402-587 492-704 (960)
334 PF08167 RIX1: rRNA processing 83.6 6.1 0.00013 35.0 7.9 112 325-440 26-146 (165)
335 KOG1259 Nischarin, modulator o 81.8 0.54 1.2E-05 44.5 0.6 124 23-166 285-410 (490)
336 PF06685 DUF1186: Protein of u 81.6 46 0.00099 31.6 13.1 96 253-374 57-161 (249)
337 smart00288 VHS Domain present 81.5 5.3 0.00012 33.8 6.4 74 238-311 37-111 (133)
338 PF00790 VHS: VHS domain; Int 81.4 9.1 0.0002 32.7 7.9 74 536-609 43-120 (140)
339 PF06685 DUF1186: Protein of u 81.1 51 0.0011 31.3 15.3 115 298-435 58-181 (249)
340 cd03567 VHS_GGA VHS domain fam 81.0 6 0.00013 33.7 6.5 73 238-311 38-116 (139)
341 PF08167 RIX1: rRNA processing 81.0 32 0.00069 30.4 11.5 113 282-400 26-147 (165)
342 PF12031 DUF3518: Domain of un 80.9 6 0.00013 36.6 6.8 85 465-550 139-231 (257)
343 PF04388 Hamartin: Hamartin pr 80.4 35 0.00075 37.9 13.8 157 239-417 5-161 (668)
344 KOG1992 Nuclear export recepto 80.3 1E+02 0.0022 34.3 25.9 400 241-666 40-531 (960)
345 cd03561 VHS VHS domain family; 80.3 9 0.00019 32.4 7.4 74 238-311 37-112 (133)
346 PF13306 LRR_5: Leucine rich r 80.0 4.7 0.0001 33.7 5.8 75 23-104 13-88 (129)
347 PF12726 SEN1_N: SEN1 N termin 79.9 1.1E+02 0.0025 34.6 27.3 114 536-664 442-555 (727)
348 PF13001 Ecm29: Proteasome sta 79.7 25 0.00055 37.6 12.3 173 378-565 248-444 (501)
349 PF03378 CAS_CSE1: CAS/CSE pro 79.5 85 0.0018 32.9 15.9 260 296-565 44-325 (435)
350 cd03572 ENTH_epsin_related ENT 79.4 30 0.00064 28.6 9.7 72 536-607 39-119 (122)
351 PF10521 DUF2454: Protein of u 78.7 24 0.00053 34.4 10.9 70 282-352 120-202 (282)
352 COG4886 Leucine-rich repeat (L 78.5 1.6 3.4E-05 45.3 2.9 60 45-108 114-174 (394)
353 KOG0889 Histone acetyltransfer 78.0 1E+02 0.0022 40.4 17.5 304 282-591 985-1332(3550)
354 KOG2739 Leucine-rich acidic nu 77.4 1 2.2E-05 42.0 0.9 111 68-192 40-156 (260)
355 PF12074 DUF3554: Domain of un 76.2 18 0.00039 36.5 9.6 214 279-503 20-255 (339)
356 KOG2038 CAATT-binding transcri 75.6 1.3E+02 0.0029 33.1 16.8 104 283-397 306-410 (988)
357 KOG0891 DNA-dependent protein 75.4 36 0.00078 43.1 13.0 265 247-523 490-764 (2341)
358 KOG1644 U2-associated snRNP A' 75.3 4 8.7E-05 36.7 3.9 88 69-165 62-150 (233)
359 KOG2982 Uncharacterized conser 74.8 2.4 5.2E-05 40.4 2.5 35 22-57 97-131 (418)
360 KOG2199 Signal transducing ada 74.6 28 0.00062 34.6 9.7 73 535-607 45-118 (462)
361 KOG1988 Uncharacterized conser 74.4 1.5E+02 0.0033 33.2 16.7 252 240-522 26-281 (970)
362 PF14726 RTTN_N: Rotatin, an a 73.3 33 0.00072 27.1 8.1 93 253-348 2-95 (98)
363 PF12231 Rif1_N: Rap1-interact 73.0 1.2E+02 0.0025 31.2 21.4 260 296-564 60-352 (372)
364 PF14726 RTTN_N: Rotatin, an a 72.8 24 0.00052 27.8 7.3 69 533-603 28-96 (98)
365 PF10521 DUF2454: Protein of u 72.1 31 0.00067 33.7 9.7 74 536-609 120-205 (282)
366 cd03565 VHS_Tom1 VHS domain fa 72.1 28 0.00061 29.7 8.3 72 537-608 40-116 (141)
367 PF08216 CTNNBL: Catenin-beta- 71.2 11 0.00024 30.1 5.1 80 204-301 27-106 (108)
368 KOG2213 Apoptosis inhibitor 5/ 71.2 1.2E+02 0.0026 30.6 18.8 235 328-587 29-288 (460)
369 PF14225 MOR2-PAG1_C: Cell mor 71.1 1E+02 0.0022 29.7 16.9 215 242-478 11-253 (262)
370 KOG1832 HIV-1 Vpr-binding prot 70.2 1.9E+02 0.0042 32.6 19.7 165 485-664 594-826 (1516)
371 PF12726 SEN1_N: SEN1 N termin 70.1 92 0.002 35.4 14.2 141 243-398 446-587 (727)
372 PF08324 PUL: PUL domain; Int 69.7 8.3 0.00018 37.4 5.2 136 420-555 122-265 (268)
373 PF10274 ParcG: Parkin co-regu 68.8 59 0.0013 29.1 9.7 74 368-442 40-114 (183)
374 KOG1259 Nischarin, modulator o 68.3 1.2 2.7E-05 42.2 -0.8 126 46-190 283-410 (490)
375 KOG4464 Signaling protein RIC- 68.2 98 0.0021 31.3 11.7 153 370-522 49-231 (532)
376 KOG0891 DNA-dependent protein 67.9 68 0.0015 40.9 13.0 269 287-565 487-764 (2341)
377 PF13306 LRR_5: Leucine rich r 66.8 14 0.0003 30.7 5.5 75 23-105 36-111 (129)
378 PF00790 VHS: VHS domain; Int 66.1 7 0.00015 33.4 3.4 74 238-311 42-118 (140)
379 KOG0301 Phospholipase A2-activ 65.4 2.1E+02 0.0045 31.2 16.7 163 289-461 552-727 (745)
380 PF12463 DUF3689: Protein of u 65.3 77 0.0017 31.1 10.6 79 533-611 93-177 (303)
381 PF12054 DUF3535: Domain of un 65.3 50 0.0011 34.6 10.1 80 253-337 102-181 (441)
382 KOG0301 Phospholipase A2-activ 64.8 1.1E+02 0.0024 33.2 12.0 163 417-587 553-725 (745)
383 KOG1822 Uncharacterized conser 64.6 3.6E+02 0.0078 33.6 21.5 132 326-461 878-1011(2067)
384 PF10274 ParcG: Parkin co-regu 64.0 1.1E+02 0.0024 27.4 10.6 74 450-525 38-112 (183)
385 cd00197 VHS_ENTH_ANTH VHS, ENT 63.8 27 0.00059 28.5 6.5 70 536-605 38-113 (115)
386 PF04499 SAPS: SIT4 phosphatas 63.5 42 0.0009 35.5 9.1 84 526-609 53-150 (475)
387 cd08050 TAF6 TATA Binding Prot 62.9 56 0.0012 33.0 9.6 112 407-520 209-338 (343)
388 PF11229 DUF3028: Protein of u 62.8 2.1E+02 0.0045 30.2 16.2 237 366-608 42-307 (589)
389 PF14225 MOR2-PAG1_C: Cell mor 62.0 1.5E+02 0.0033 28.5 17.3 163 339-521 77-253 (262)
390 KOG0392 SNF2 family DNA-depend 62.0 46 0.001 38.7 9.3 231 282-523 78-326 (1549)
391 KOG0392 SNF2 family DNA-depend 61.7 67 0.0015 37.5 10.5 236 238-481 77-327 (1549)
392 PF03378 CAS_CSE1: CAS/CSE pro 61.0 2.2E+02 0.0047 29.9 14.7 262 336-608 42-325 (435)
393 PF09324 DUF1981: Domain of un 59.7 19 0.0004 27.7 4.4 70 364-433 15-84 (86)
394 PF09758 FPL: Uncharacterised 59.6 7.4 0.00016 33.2 2.3 125 481-605 15-147 (149)
395 KOG2038 CAATT-binding transcri 59.5 2.9E+02 0.0062 30.8 17.9 98 243-352 309-408 (988)
396 PF11791 Aconitase_B_N: Aconit 56.8 26 0.00055 29.9 4.9 101 238-352 22-122 (154)
397 KOG2213 Apoptosis inhibitor 5/ 56.6 2.3E+02 0.0049 28.7 11.9 54 464-523 38-91 (460)
398 PF12054 DUF3535: Domain of un 56.3 1.4E+02 0.0031 31.3 11.6 300 339-653 102-434 (441)
399 PF08216 CTNNBL: Catenin-beta- 56.2 12 0.00027 29.8 2.9 42 554-597 65-106 (108)
400 PF01417 ENTH: ENTH domain; I 54.7 66 0.0014 26.7 7.3 100 546-664 14-123 (125)
401 KOG4237 Extracellular matrix p 54.7 4.9 0.00011 40.1 0.5 137 34-187 57-196 (498)
402 PF04821 TIMELESS: Timeless pr 53.9 84 0.0018 30.4 8.8 75 590-664 132-210 (266)
403 KOG2005 26S proteasome regulat 53.1 3.1E+02 0.0066 30.0 12.8 365 239-649 453-843 (878)
404 PF04388 Hamartin: Hamartin pr 52.3 2.4E+02 0.0052 31.6 13.0 72 452-525 72-143 (668)
405 cd00197 VHS_ENTH_ANTH VHS, ENT 51.4 1.3E+02 0.0029 24.4 9.1 70 579-660 38-113 (115)
406 PF12074 DUF3554: Domain of un 50.4 2.8E+02 0.0061 27.9 17.2 191 367-565 23-236 (339)
407 cd03565 VHS_Tom1 VHS domain fa 50.3 74 0.0016 27.2 7.0 74 238-311 38-115 (141)
408 KOG1859 Leucine-rich repeat pr 49.7 4.6 9.9E-05 43.7 -0.6 37 46-82 83-120 (1096)
409 smart00370 LRR Leucine-rich re 49.0 11 0.00024 21.0 1.2 21 154-175 1-21 (26)
410 smart00369 LRR_TYP Leucine-ric 49.0 11 0.00024 21.0 1.2 21 154-175 1-21 (26)
411 KOG1859 Leucine-rich repeat pr 49.0 4.4 9.5E-05 43.8 -0.8 15 44-58 106-120 (1096)
412 KOG1087 Cytosolic sorting prot 48.9 87 0.0019 32.9 8.4 73 536-608 39-113 (470)
413 PLN03205 ATR interacting prote 48.7 3E+02 0.0066 27.8 13.5 160 407-567 322-519 (652)
414 PF09758 FPL: Uncharacterised 48.4 84 0.0018 27.0 6.8 123 313-435 15-147 (149)
415 PF08767 CRM1_C: CRM1 C termin 48.1 3E+02 0.0064 27.5 14.3 179 466-661 43-243 (319)
416 PF08711 Med26: TFIIS helical 48.0 50 0.0011 22.4 4.6 34 626-659 13-47 (53)
417 KOG2073 SAP family cell cycle 47.5 4.9E+02 0.011 29.8 16.5 224 407-638 189-425 (838)
418 PF04869 Uso1_p115_head: Uso1 46.8 3E+02 0.0066 27.3 13.6 60 419-478 167-230 (312)
419 PF09324 DUF1981: Domain of un 46.3 90 0.002 23.9 6.2 67 576-659 15-85 (86)
420 PF11791 Aconitase_B_N: Aconit 45.7 1E+02 0.0022 26.5 6.7 100 410-522 24-123 (154)
421 KOG2149 Uncharacterized conser 45.4 2.2E+02 0.0048 28.9 10.1 114 409-524 59-172 (393)
422 PF04869 Uso1_p115_head: Uso1 45.3 3.2E+02 0.007 27.1 16.7 172 464-642 52-262 (312)
423 PF04821 TIMELESS: Timeless pr 45.1 2.9E+02 0.0064 26.6 12.2 35 445-479 173-208 (266)
424 KOG4464 Signaling protein RIC- 44.6 3.6E+02 0.0079 27.6 13.3 104 506-609 110-230 (532)
425 smart00567 EZ_HEAT E-Z type HE 44.6 25 0.00055 20.3 2.4 28 297-335 2-29 (30)
426 cd08050 TAF6 TATA Binding Prot 44.2 2.6E+02 0.0057 28.2 10.9 110 368-478 212-339 (343)
427 KOG2676 Uncharacterized conser 43.3 31 0.00066 33.9 3.8 63 302-364 376-440 (478)
428 PRK09169 hypothetical protein; 42.8 8.6E+02 0.019 31.4 27.1 107 240-350 165-274 (2316)
429 PF08713 DNA_alkylation: DNA a 41.8 2.8E+02 0.0061 25.4 11.0 142 410-577 53-196 (213)
430 PF08713 DNA_alkylation: DNA a 41.5 2.8E+02 0.0061 25.4 12.3 140 285-449 55-196 (213)
431 KOG0532 Leucine-rich repeat (L 40.3 12 0.00027 39.3 0.8 99 59-174 154-252 (722)
432 KOG2073 SAP family cell cycle 40.0 2.3E+02 0.0049 32.3 10.3 63 525-587 180-248 (838)
433 smart00509 TFS2N Domain in the 40.0 1.2E+02 0.0027 22.5 5.9 34 626-659 35-68 (75)
434 PF12783 Sec7_N: Guanine nucle 39.8 2.6E+02 0.0057 24.6 10.8 108 253-364 37-157 (168)
435 PF13516 LRR_6: Leucine Rich r 39.7 17 0.00038 19.7 1.0 12 155-166 2-13 (24)
436 KOG0803 Predicted E3 ubiquitin 39.6 5.7E+02 0.012 31.1 13.8 200 452-660 43-261 (1312)
437 KOG1788 Uncharacterized conser 39.6 6.8E+02 0.015 29.3 19.0 276 260-561 664-979 (2799)
438 KOG2149 Uncharacterized conser 39.4 1.8E+02 0.004 29.4 8.6 121 451-573 59-179 (393)
439 PF03130 HEAT_PBS: PBS lyase H 37.7 55 0.0012 18.5 2.9 26 383-418 1-26 (27)
440 PF04499 SAPS: SIT4 phosphatas 37.0 5.1E+02 0.011 27.6 12.0 74 568-641 52-126 (475)
441 KOG1087 Cytosolic sorting prot 36.8 73 0.0016 33.4 5.7 73 238-310 38-111 (470)
442 KOG0803 Predicted E3 ubiquitin 36.4 8.7E+02 0.019 29.6 16.9 253 240-502 43-330 (1312)
443 PF07923 N1221: N1221-like pro 35.8 1.5E+02 0.0032 29.2 7.5 55 533-587 58-125 (293)
444 PF04510 DUF577: Family of unk 34.7 3.3E+02 0.0071 24.1 10.8 156 494-663 5-165 (174)
445 PF06012 DUF908: Domain of Unk 34.6 1.7E+02 0.0036 29.4 7.8 65 297-362 237-306 (329)
446 KOG1644 U2-associated snRNP A' 34.5 54 0.0012 29.9 3.7 90 44-142 61-153 (233)
447 KOG2011 Sister chromatid cohes 34.4 8.3E+02 0.018 28.8 13.8 133 502-658 297-431 (1048)
448 PF08767 CRM1_C: CRM1 C termin 34.4 4.8E+02 0.01 26.0 14.9 185 423-610 42-247 (319)
449 PRK09169 hypothetical protein; 34.1 1.2E+03 0.025 30.4 24.6 109 283-394 165-275 (2316)
450 PF08389 Xpo1: Exportin 1-like 33.3 1.2E+02 0.0025 25.8 5.9 63 408-474 82-148 (148)
451 KOG2085 Serine/threonine prote 33.1 4.7E+02 0.01 26.8 10.1 85 313-398 166-250 (457)
452 cd00183 TFIIS_I N-terminal dom 33.1 2E+02 0.0043 21.4 6.1 34 626-659 37-70 (76)
453 KOG1988 Uncharacterized conser 32.9 7.8E+02 0.017 28.0 15.4 162 386-565 43-207 (970)
454 KOG2549 Transcription initiati 32.4 5.7E+02 0.012 27.4 11.0 132 379-521 219-369 (576)
455 KOG2085 Serine/threonine prote 31.7 1.1E+02 0.0024 31.1 5.6 192 274-475 170-366 (457)
456 KOG2199 Signal transducing ada 31.7 1.7E+02 0.0036 29.5 6.8 74 238-311 45-118 (462)
457 KOG4524 Uncharacterized conser 31.1 1.6E+02 0.0035 33.5 7.3 95 407-503 802-900 (1014)
458 COG5537 IRR1 Cohesin [Cell div 30.4 7.4E+02 0.016 26.9 11.7 136 334-479 285-422 (740)
459 KOG0531 Protein phosphatase 1, 29.9 32 0.0007 35.9 2.0 12 154-165 161-172 (414)
460 PF14663 RasGEF_N_2: Rapamycin 29.8 95 0.0021 25.4 4.3 38 325-363 9-46 (115)
461 smart00273 ENTH Epsin N-termin 28.6 3.4E+02 0.0074 22.5 8.7 79 581-670 42-127 (127)
462 PF14663 RasGEF_N_2: Rapamycin 28.2 3.3E+02 0.0072 22.2 10.3 101 536-662 9-110 (115)
463 PF08064 UME: UME (NUC010) dom 28.1 3.1E+02 0.0066 22.1 6.9 80 492-576 11-95 (107)
464 PF12463 DUF3689: Protein of u 28.0 6E+02 0.013 25.1 15.0 124 275-398 3-175 (303)
465 PF01365 RYDR_ITPR: RIH domain 27.8 1.5E+02 0.0032 27.3 5.8 120 485-610 36-172 (207)
466 PF12397 U3snoRNP10: U3 small 25.7 3.7E+02 0.0081 22.0 9.7 110 405-520 3-120 (121)
467 KOG2676 Uncharacterized conser 25.6 1.1E+02 0.0024 30.3 4.4 64 469-532 375-439 (478)
468 KOG4237 Extracellular matrix p 24.0 9.7 0.00021 38.1 -2.8 113 24-148 69-182 (498)
469 PF06012 DUF908: Domain of Unk 23.4 2.5E+02 0.0053 28.2 6.8 64 253-318 237-304 (329)
470 KOG2011 Sister chromatid cohes 22.6 7E+02 0.015 29.3 10.5 134 291-434 297-432 (1048)
471 KOG2229 Protein required for a 22.4 3.6E+02 0.0078 28.4 7.5 111 492-611 16-133 (616)
472 PF12765 Cohesin_HEAT: HEAT re 22.1 1.6E+02 0.0035 18.9 3.4 26 407-432 17-42 (42)
473 KOG4231 Intracellular membrane 21.6 1.5E+02 0.0032 31.0 4.6 68 453-521 331-398 (763)
474 PF14666 RICTOR_M: Rapamycin-i 21.1 6.9E+02 0.015 23.4 12.7 129 296-436 78-224 (226)
475 PF08064 UME: UME (NUC010) dom 20.8 3.6E+02 0.0078 21.7 6.0 68 408-480 11-84 (107)
476 PF13925 Katanin_con80: con80 20.7 5.8E+02 0.013 22.4 8.7 74 364-438 26-99 (164)
477 KOG2549 Transcription initiati 20.7 1.1E+03 0.023 25.4 12.7 141 328-479 211-370 (576)
478 KOG4231 Intracellular membrane 20.6 73 0.0016 33.1 2.3 68 328-396 332-399 (763)
479 KOG1924 RhoA GTPase effector D 20.6 1.3E+03 0.027 26.2 15.3 57 465-522 207-263 (1102)
480 PF12783 Sec7_N: Guanine nucle 20.6 4.6E+02 0.0099 23.0 7.3 75 407-482 72-149 (168)
No 1
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-56 Score=441.75 Aligned_cols=423 Identities=66% Similarity=1.006 Sum_probs=402.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 037562 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKV 319 (670)
Q Consensus 240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 319 (670)
.+.+++.+.+++++.+..+...++++.+.+..++++.++..|++|.+++++...+++.++..|+|+|+|++.++.+..+.
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 78888999999999999999999999998878889999999999999999987666999999999999999999999999
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC-
Q 037562 320 VIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK- 398 (670)
Q Consensus 320 i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~- 398 (670)
++++|++|.|+.++.+++..++++|+|+|+|++.+++.+|+.+++.|++++|+.++.......+.+++.|+|+|+|++.
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999999999966655688999999999999998
Q ss_pred CCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhh
Q 037562 399 PQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIV 478 (670)
Q Consensus 399 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 478 (670)
|.+.+..+..++|.|..++.+.|++|...|+|++++++++..+.++.+++.|+++.++.+|.+.+..++..|+++++|++
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv 307 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV 307 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHH
Q 037562 479 KGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWA 558 (670)
Q Consensus 479 ~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~a 558 (670)
.+++.+++.+++.|+++.|..++...+...++++|+|+++|+++++.++++.+++.|++|.|+.++++++.++|++|+||
T Consensus 308 tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawa 387 (514)
T KOG0166|consen 308 TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWA 387 (514)
T ss_pred eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999999999999965477799999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHH
Q 037562 559 ISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKI 638 (670)
Q Consensus 559 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l 638 (670)
++|++..|++++..++++.|+|++++++|...|.++...++.+++++++.++..... .. +.+..+++++||++.+
T Consensus 388 IsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~----~~-n~~~~~IEe~ggldki 462 (514)
T KOG0166|consen 388 ISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNR----GT-NPLAIMIEEAGGLDKI 462 (514)
T ss_pred HHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccc----cc-cHHHHHHHHccChhHH
Confidence 999999999999999999999999999999999999999999999999999887632 11 7899999999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHhcCCcccc
Q 037562 639 ENLQSHDDNGISEKAVEILETYWSSRVIG 667 (670)
Q Consensus 639 ~~L~~~~~~~v~~~a~~~l~~~~~~~~~~ 667 (670)
+.|+.|+++++++.|.++|++||++|+.+
T Consensus 463 E~LQ~hen~~Iy~~A~~II~~yf~~e~~~ 491 (514)
T KOG0166|consen 463 ENLQSHENEEIYKKAYKIIDTYFSEEDDE 491 (514)
T ss_pred HHhhccccHHHHHHHHHHHHHhcCCCccc
Confidence 99999999999999999999999987544
No 2
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=1e-55 Score=400.79 Aligned_cols=427 Identities=55% Similarity=0.855 Sum_probs=398.8
Q ss_pred hccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 037562 237 LEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN 316 (670)
Q Consensus 237 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~ 316 (670)
...+|.+.+.+.++|-+.+.+|...++++.+.+..++++.+++.|++|.++++++.....-.+..|+|+|+|++.+....
T Consensus 70 ~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~Q 149 (526)
T COG5064 70 YSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQ 149 (526)
T ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccc
Confidence 35689999999999999999999999999999889999999999999999999965543678999999999999999999
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccC-ChhHHHHHHHHHHhhh
Q 037562 317 TKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENA-NLSMLRTATWTLFNFC 395 (670)
Q Consensus 317 ~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~-~~~~~~~a~~~L~~l~ 395 (670)
.+.++++|++|.++++|.+++.+++++++|+|+|++.+++.+|+.+++.|++.+++.++..+. +..+.+++.|+|+|+|
T Consensus 150 TkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlc 229 (526)
T COG5064 150 TKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLC 229 (526)
T ss_pred eEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999996543 3588999999999999
Q ss_pred cCC-CCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHH
Q 037562 396 RGK-PQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTI 474 (670)
Q Consensus 396 ~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L 474 (670)
++. |.+....++..+|.|.+++.+.|+++...|+|+++.+++.+.+..+.+++.|....|+.+|.+++..++..|++.+
T Consensus 230 RGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~v 309 (526)
T COG5064 230 RGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSV 309 (526)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhh
Confidence 987 7777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHH
Q 037562 475 RNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKE 554 (670)
Q Consensus 475 ~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 554 (670)
+|+..+++.+.+.+++.|+++.+..+|.++ ...+|++|||+++|+++++.++++.+++.+++|.|+.++...+..++++
T Consensus 310 GNIVTG~D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKE 388 (526)
T COG5064 310 GNIVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKE 388 (526)
T ss_pred cCeeecCccceehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC--CHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHh
Q 037562 555 AAWAISNATKFG--THEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEA 632 (670)
Q Consensus 555 a~~aL~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (670)
||||+.|...++ .|+..++++++|+|.+|+++|+-.+..+...++.++.+++..++.....-. .+.|.+...++++
T Consensus 389 ACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~--~nin~ya~~vE~A 466 (526)
T COG5064 389 ACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYG--KNINIYAVYVEKA 466 (526)
T ss_pred HHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhcc--CCccHHHHHHHhc
Confidence 999999999875 678999999999999999999999999999999999999998877654322 3567789999999
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHhcCCccc
Q 037562 633 EGLEKIENLQSHDDNGISEKAVEILETYWSSRVI 666 (670)
Q Consensus 633 g~~~~l~~L~~~~~~~v~~~a~~~l~~~~~~~~~ 666 (670)
||++.+..++++.+.+++.+|..+|++||++|+.
T Consensus 467 ggmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~ 500 (526)
T COG5064 467 GGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDA 500 (526)
T ss_pred ccHHHHHHhhhccccHHHHHHHHHHHHHcccchh
Confidence 9999999999999999999999999999987753
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.5e-42 Score=338.47 Aligned_cols=389 Identities=25% Similarity=0.390 Sum_probs=341.6
Q ss_pred hhccccCCCccccchhhhhh--ccHHHHHHHhc-CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC
Q 037562 218 QSQRSRISTPVLSLNLQSKL--EILPAMVDGVW-SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQD 294 (670)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~--~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~ 294 (670)
+..|...+...+ +|++..+ |.+|.+++.+. .+++.++++|+|+|.+++++. ++..+.+++.|++|.++.++.+++
T Consensus 88 ~~~rkllS~~~~-ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~ 165 (514)
T KOG0166|consen 88 QAFRKLLSKERN-PPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS 165 (514)
T ss_pred HHHHHHHccCCC-CCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc
Confidence 344444455555 4666655 78999999997 566999999999999999987 778889999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHH
Q 037562 295 YPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSV-DVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLA 373 (670)
Q Consensus 295 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~ 373 (670)
.+++++|+|+|+|++.+++.+|+.+++.|++++|+.++..++. .+..++.|+|.|+|.+.......-.-..+++.|..
T Consensus 166 -~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ 244 (514)
T KOG0166|consen 166 -ADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLR 244 (514)
T ss_pred -HHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999988665 78889999999999765221222222236888888
Q ss_pred HhcccCChhHHHHHHHHHHhhhcCCCCC-ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCH
Q 037562 374 ELNENANLSMLRTATWTLFNFCRGKPQP-PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVY 452 (670)
Q Consensus 374 ~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i 452 (670)
++ .+.|+++...|+|++++++.+.+.. ......|++|.|+.+|.+.+..++..|+++++|++.+++.+.+.+++.|++
T Consensus 245 ll-~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L 323 (514)
T KOG0166|consen 245 LL-HSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGAL 323 (514)
T ss_pred HH-hcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChH
Confidence 88 8899999999999999999887444 444458999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcC-CCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc-CCHHHHHH
Q 037562 453 PRLVELLG-HSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC-GNREQIQA 530 (670)
Q Consensus 453 ~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~ 530 (670)
+.+..++. ++...++.+|+|+|+|++.++..+++.++++|++|.|+.+++.. +..+|++|+|+++|++. ++++++.+
T Consensus 324 ~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~y 402 (514)
T KOG0166|consen 324 PVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKY 402 (514)
T ss_pred HHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHH
Confidence 99999999 56666999999999999999999999999999999999999999 99999999999999988 68999999
Q ss_pred HHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCC-------HHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHH
Q 037562 531 VIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGT-------HEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLE 603 (670)
Q Consensus 531 l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-------~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~ 603 (670)
+++.|+++.+.++|...|.++...+..++.++...+. ......+-+.|+++.+..+-.+++.++...|...+.
T Consensus 403 Lv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~ 482 (514)
T KOG0166|consen 403 LVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIID 482 (514)
T ss_pred HHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHH
Confidence 9999999999999998999999999999999977542 334556678999999999999999999999999999
Q ss_pred HHHHhhhh
Q 037562 604 NILKVGVA 611 (670)
Q Consensus 604 ~l~~~~~~ 611 (670)
++|..++.
T Consensus 483 ~yf~~e~~ 490 (514)
T KOG0166|consen 483 TYFSEEDD 490 (514)
T ss_pred HhcCCCcc
Confidence 99876533
No 4
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.1e-41 Score=309.45 Aligned_cols=383 Identities=23% Similarity=0.331 Sum_probs=331.9
Q ss_pred cccCCCccccchhhhhh--ccHHHHHHHhc-CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHH
Q 037562 221 RSRISTPVLSLNLQSKL--EILPAMVDGVW-SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQ 297 (670)
Q Consensus 221 ~~~~~~~~~~~~~~~~~--~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~ 297 (670)
|+..+.+.+ +|++..+ |.+|.+++++. .+..-.+++|+|+|.|++++. ..+.+.+++.|++|.++++|.+++ .+
T Consensus 96 R~~LS~E~~-PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~ 172 (526)
T COG5064 96 RKLLSKETS-PPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DD 172 (526)
T ss_pred HHHhccccC-CCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HH
Confidence 444455544 4777776 66999999995 566678999999999999987 677788899999999999999999 89
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHh
Q 037562 298 LQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP--SVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAEL 375 (670)
Q Consensus 298 v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l 375 (670)
|+++++|+|+|++.+++.+|+.+++.|++++++.++.+. +..+...+.|+|+|+|.+.....+.-.-..++|.|.+++
T Consensus 173 V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLi 252 (526)
T COG5064 173 VREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLI 252 (526)
T ss_pred HHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998774 458889999999999964322111111122588888888
Q ss_pred cccCChhHHHHHHHHHHhhhcCCCCC-ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHH
Q 037562 376 NENANLSMLRTATWTLFNFCRGKPQP-PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPR 454 (670)
Q Consensus 376 ~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~ 454 (670)
...|+++...|+|++++++...... ......|+.+.|+.+|.+++..++..+++.++|+..+++.+.+.+++.|+++.
T Consensus 253 -ys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a 331 (526)
T COG5064 253 -YSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKA 331 (526)
T ss_pred -hhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHH
Confidence 8889999999999999999986333 33344788899999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc---CCHHHHHHH
Q 037562 455 LVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC---GNREQIQAV 531 (670)
Q Consensus 455 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~---~~~~~~~~l 531 (670)
+-.+|+++...+|+.|||+++|++.++.++++.+++.+++|+|+.+|.+. +..++++|||++.|... ..|+.++++
T Consensus 332 ~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryL 410 (526)
T COG5064 332 FRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYL 410 (526)
T ss_pred HHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999 99999999999999987 468899999
Q ss_pred HhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCH----------HHHHHHHHcCCcHHHHhhccCCChHHHHHHHHH
Q 037562 532 IDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTH----------EQIKHLVREGCVKPLCDLLLCADPKIVTVCLEG 601 (670)
Q Consensus 532 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~----------~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~ 601 (670)
++.|++..|.++|.-.+..+.+.++.++.++...|.. .+..++-+.|+++.+..+-++.+..+..+|-.+
T Consensus 411 v~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsI 490 (526)
T COG5064 411 VSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSI 490 (526)
T ss_pred HHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHH
Confidence 9999999999999988888888889999998876522 334455569999999999999999999999999
Q ss_pred HHHHHHh
Q 037562 602 LENILKV 608 (670)
Q Consensus 602 l~~l~~~ 608 (670)
+..+|..
T Consensus 491 Ie~fFge 497 (526)
T COG5064 491 IEKFFGE 497 (526)
T ss_pred HHHHccc
Confidence 9888743
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=7.5e-37 Score=346.41 Aligned_cols=439 Identities=18% Similarity=0.215 Sum_probs=352.0
Q ss_pred hhHHHHhhcchhhhhhccccCCC-ccccchhhhhhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCC
Q 037562 204 TIKYLYLKKLGEFLQSQRSRIST-PVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGV 282 (670)
Q Consensus 204 ~i~~l~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~ 282 (670)
.++..+...+.+++...+..... ... |++|.+++.+.++++..+..|+++|.+++... .+....+++.|+
T Consensus 162 ~L~~~Av~AL~nLs~~~en~~~~IIea--------GaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGa 232 (2102)
T PLN03200 162 VVEGLLTGALRNLCGSTDGFWSATLEA--------GGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGA 232 (2102)
T ss_pred HHHHHHHHHHHHHhcCccchHHHHHHc--------CCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCC
Confidence 45666667777787776655332 222 67999999999999999999999998887664 457888999999
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCC---------HHHHHHHHHHHHHhhC
Q 037562 283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPS---------VDVRKQTVWALGNVAG 353 (670)
Q Consensus 283 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~---------~~v~~~a~~~L~~l~~ 353 (670)
+|.|++++++++.+.+|+.|+++|++++.++++.++.+++.|+++.|++++..++ ..++++|+|+|+|+|.
T Consensus 233 VP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg 312 (2102)
T PLN03200 233 VKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG 312 (2102)
T ss_pred HHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC
Confidence 9999999987553799999999999999999999999999999999999998655 3468999999999997
Q ss_pred CCch-----------hHH--------------------------------------------------------------
Q 037562 354 DSPR-----------CRD-------------------------------------------------------------- 360 (670)
Q Consensus 354 ~~~~-----------~~~-------------------------------------------------------------- 360 (670)
+.+. .++
T Consensus 313 g~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~g 392 (2102)
T PLN03200 313 GMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYG 392 (2102)
T ss_pred CchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcC
Confidence 5222 100
Q ss_pred ------HHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCC-CChhhhhhhHHHHHHhhccCChhHHHHHHHHHH
Q 037562 361 ------LVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQ-PPFNQVRPALPVLAQLIRSNDEEVLTDACWALS 433 (670)
Q Consensus 361 ------~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~ 433 (670)
.+.+.++++.|+.++ ...+.+++..++|+|++++.++.. .......+++|.|+++|.+++..++..++++++
T Consensus 393 N~~l~~~L~~~daik~LV~LL-~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~ 471 (2102)
T PLN03200 393 NAYLSRKLNHAEAKKVLVGLI-TMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLA 471 (2102)
T ss_pred ChHHHHHHHhccchhhhhhhh-ccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 000112222223333 234467888999999999987533 344455889999999999999999999999999
Q ss_pred HhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHH
Q 037562 434 YLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEV 513 (670)
Q Consensus 434 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a 513 (670)
+++..++++...+.+.|+++.|+.+|.+++..+++.|+|+|+|++.+.++....+.+.|+++.|+++|+++ ++++++.|
T Consensus 472 nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg-d~~~q~~A 550 (2102)
T PLN03200 472 ILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG-GPKGQEIA 550 (2102)
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHH
Confidence 99988888888899999999999999999999999999999999986544444344667777777777666 66666666
Q ss_pred HHHHHHh-------------------------------------------------------------------------
Q 037562 514 SWIISNI------------------------------------------------------------------------- 520 (670)
Q Consensus 514 ~~~L~~l------------------------------------------------------------------------- 520 (670)
+|+|.++
T Consensus 551 a~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa 630 (2102)
T PLN03200 551 AKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAA 630 (2102)
T ss_pred HHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHH
Confidence 6666665
Q ss_pred ------hcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHH
Q 037562 521 ------TCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKI 594 (670)
Q Consensus 521 ------~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 594 (670)
+.+.+++...++..|+++.++.++.+++.+++++|+++|.+++..+...+...+++.|++++|++++++.+.++
T Consensus 631 ~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v 710 (2102)
T PLN03200 631 SVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEV 710 (2102)
T ss_pred HHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHH
Confidence 33334445556677888889998888888999999999999998878788888899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCcccc
Q 037562 595 VTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYWSSRVIG 667 (670)
Q Consensus 595 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~~~~~~~ 667 (670)
+..++.+|.+++..++. +..+.+.|+++.|..++.+.+++.++.|.++|.++.....++
T Consensus 711 ~e~Al~ALanLl~~~e~--------------~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~ 769 (2102)
T PLN03200 711 AEQAVCALANLLSDPEV--------------AAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVD 769 (2102)
T ss_pred HHHHHHHHHHHHcCchH--------------HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChh
Confidence 99999999999987664 344568899999999999999999999999998887555443
No 6
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=336.67 Aligned_cols=416 Identities=19% Similarity=0.200 Sum_probs=367.7
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT 317 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 317 (670)
++++.|+.++...+.++|.+++++|..++.++ .+.++.+.+.|+++.|+++|.+++ ..+|..|++++++++.++++.+
T Consensus 404 daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~ndenr 481 (2102)
T PLN03200 404 EAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVDESK 481 (2102)
T ss_pred cchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCHHHH
Confidence 67899999999999999999999999998765 677889999999999999999998 8999999999999999889999
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562 318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG 397 (670)
Q Consensus 318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 397 (670)
..+++.|++|.|+++|.+++..+++.|+|+|+|++.+.+..+..+.+.|++++|+++| ++.+...+..|+|+|.+++..
T Consensus 482 ~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nLi~~ 560 (2102)
T PLN03200 482 WAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKLVRT 560 (2102)
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998878888888899999999999 667889999999999999743
Q ss_pred CCCCC-----------------------------------h---hhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 037562 398 KPQPP-----------------------------------F---NQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGT 439 (670)
Q Consensus 398 ~~~~~-----------------------------------~---~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~ 439 (670)
..... . ....++++.|+.+++++++.+++.|+++|.+++...
T Consensus 561 ~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~ 640 (2102)
T PLN03200 561 ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSR 640 (2102)
T ss_pred cchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 21110 0 012478999999999999999999999999999998
Q ss_pred hHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCc-hhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHH
Q 037562 440 NDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDD-FQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIIS 518 (670)
Q Consensus 440 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~ 518 (670)
.+..+.++..|+++.++.+|++++.+++..|+++|++++.+.. .+...+++.|++++|++++++. +..++..|+.+|.
T Consensus 641 ~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~ALa 719 (2102)
T PLN03200 641 QDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVCALA 719 (2102)
T ss_pred hHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHHHHH
Confidence 8888889999999999999999999999999999999997544 3445678999999999999998 9999999999999
Q ss_pred HhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHH--HHHHHHcCCcHHHHhhccCCChHHHH
Q 037562 519 NITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQ--IKHLVREGCVKPLCDLLLCADPKIVT 596 (670)
Q Consensus 519 ~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~--~~~l~~~~~i~~L~~ll~~~~~~v~~ 596 (670)
|++.. ++....+.+.|+++.|++++++++++.|++|+++|.+++..++.+. ..++...|.+.+|+++|+..|.+...
T Consensus 720 nLl~~-~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~ 798 (2102)
T PLN03200 720 NLLSD-PEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSA 798 (2102)
T ss_pred HHHcC-chHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhh
Confidence 99876 4456777888999999999999999999999999999998865443 36667899999999999999888776
Q ss_pred H--HHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCc
Q 037562 597 V--CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYWSSR 664 (670)
Q Consensus 597 ~--a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~~~~ 664 (670)
. ++.++..+.+..+.... ..+++..+++..++++.|.....+.+|.++++|+++|+++.++.
T Consensus 799 ~~~al~~l~~l~~~~~~~~~------~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~ 862 (2102)
T PLN03200 799 TSEALEALALLARTKGGANF------SHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQ 862 (2102)
T ss_pred HHHHHHHHHHHHhhcccCCC------CCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccC
Confidence 6 89999999886555443 34568889999999999977779999999999999999997653
No 7
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-31 Score=246.32 Aligned_cols=402 Identities=19% Similarity=0.215 Sum_probs=344.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 037562 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKV 319 (670)
Q Consensus 240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 319 (670)
+..+...+++.++.++..|..++.+++-. .++.-.+++.+++..|+.-+..+. .++|..++.|+.+++. .++++..
T Consensus 87 ~epvl~llqs~d~~Iq~aa~~alGnlAVn--~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT-~d~nk~k 162 (550)
T KOG4224|consen 87 NEPVLALLQSCDKCIQCAAGEALGNLAVN--MENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLAT-FDSNKVK 162 (550)
T ss_pred hhHHHHHHhCcchhhhhhhhhhhccceec--cCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhc-cccchhh
Confidence 46677788999999999999999999776 566666777888888877776666 5999999999999998 5888999
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCC
Q 037562 320 VIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKP 399 (670)
Q Consensus 320 i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~ 399 (670)
+...|++.++.++-++.+..++.++..+|.|++ +..+.|+.++..|++|.|+.++ +..+++++..++.+++|+.-...
T Consensus 163 iA~sGaL~pltrLakskdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaVd~~ 240 (550)
T KOG4224|consen 163 IARSGALEPLTRLAKSKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAVDRR 240 (550)
T ss_pred hhhccchhhhHhhcccchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhhhHH
Confidence 999999999999889999999999999999998 4456788899999999999999 88999999999999999998765
Q ss_pred CCChhhhhh--hHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHh
Q 037562 400 QPPFNQVRP--ALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477 (670)
Q Consensus 400 ~~~~~~~~~--~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 477 (670)
.+......+ .+|.|+.++.++++.++-.|..+|++++... .+...+.+.|.+|.++.+++++..........|+.|+
T Consensus 241 ~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrni 319 (550)
T KOG4224|consen 241 ARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT-EYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNI 319 (550)
T ss_pred HHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhc
Confidence 555555544 9999999999999999999999999999654 4556699999999999999999988899999999999
Q ss_pred hcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHH
Q 037562 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAW 557 (670)
Q Consensus 478 ~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 557 (670)
+-+.- ..-.++++|++.+|+.+|..+++.+++-.|..+|.|++..+..+...+.+.|.+|.++.++.++...++.+...
T Consensus 320 sihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisa 398 (550)
T KOG4224|consen 320 SIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISA 398 (550)
T ss_pred ccccC-cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHH
Confidence 97543 34447899999999999999867779999999999999988889999999999999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHh-----
Q 037562 558 AISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEA----- 632 (670)
Q Consensus 558 aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 632 (670)
++..++.. ......+.+.|.++.|+.+..+.+.+++.++..+|.++...-+. |...++.-
T Consensus 399 c~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~-------------YarviEawd~P~~ 463 (550)
T KOG4224|consen 399 CIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEH-------------YARVIEAWDHPVQ 463 (550)
T ss_pred HHHHHHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHH-------------HHHHHHHhcCcch
Confidence 99999984 46778899999999999999999999999999999998855333 44444321
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHhcCCc
Q 037562 633 EGLEKIENLQSHDDNGISEKAVEILETYWSSR 664 (670)
Q Consensus 633 g~~~~l~~L~~~~~~~v~~~a~~~l~~~~~~~ 664 (670)
|.-..|..+..+....++..+.|.|..+...-
T Consensus 464 gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h 495 (550)
T KOG4224|consen 464 GIQGRLARFLASHELTFRHIARWTIQQLLEDH 495 (550)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 22334666677777788888888888776443
No 8
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.8e-30 Score=234.97 Aligned_cols=361 Identities=21% Similarity=0.296 Sum_probs=318.1
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT 317 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 317 (670)
.++..++..+..+...+|..|..++.+++.. .+....+...|++.++.++-++.+ ..+|.++..+|.++.. ..++|
T Consensus 126 ~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-s~EnR 201 (550)
T KOG4224|consen 126 LGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-SRENR 201 (550)
T ss_pred cChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-hhhhh
Confidence 5577777777788889999999999999887 677788899999999999878888 7999999999999997 89999
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcC--ChHHHHHHhcccCChhHHHHHHHHHHhhh
Q 037562 318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQG--ALIPLLAELNENANLSMLRTATWTLFNFC 395 (670)
Q Consensus 318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~--~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~ 395 (670)
+.++.+|++|.|+.++++.+.++++.|..+++|++.+. ..|+.+.+.+ .++.|+.++ ++.++.++-.|..+|.|++
T Consensus 202 r~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~-~~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lALrnla 279 (550)
T KOG4224|consen 202 RVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDR-RARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLALRNLA 279 (550)
T ss_pred hhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhH-HHHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999998654 4678888887 899999999 8888999999999999999
Q ss_pred cCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCc-cchhHHHHHH
Q 037562 396 RGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSS-SVLTPALRTI 474 (670)
Q Consensus 396 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-~v~~~a~~~L 474 (670)
............|.+|.++++++++..........|+.|++.++- +...+.+.|++..++.+|..++. +++..|..+|
T Consensus 280 sdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstL 358 (550)
T KOG4224|consen 280 SDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTL 358 (550)
T ss_pred ccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC-cccceecccchhHHHHHHhcCCchhhhhhHHHHH
Confidence 988777777789999999999999988888888899999997644 44558889999999999998654 5999999999
Q ss_pred HHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHH
Q 037562 475 RNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKE 554 (670)
Q Consensus 475 ~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 554 (670)
+|++.........++++|.++.+..++.++ ..++|++...+++.++.. +.....+.+.|+++.|+.+..+.+.+++.+
T Consensus 359 rnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~Ev~gN 436 (550)
T KOG4224|consen 359 RNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESEEVRGN 436 (550)
T ss_pred HHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccchhhccc
Confidence 999997778888899999999999999999 889999999999998664 455678899999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHH------cCCcHHHHhhccCCChHHHHHHHHHHHHHHHhh
Q 037562 555 AAWAISNATKFGTHEQIKHLVR------EGCVKPLCDLLLCADPKIVTVCLEGLENILKVG 609 (670)
Q Consensus 555 a~~aL~~l~~~~~~~~~~~l~~------~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~ 609 (670)
|+.||.|++. +.+....+++ .|.-..|.+++.+.+..+++.+.|.+..++...
T Consensus 437 aAaAL~Nlss--~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h 495 (550)
T KOG4224|consen 437 AAAALINLSS--DVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDH 495 (550)
T ss_pred HHHHHHhhhh--hhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhC
Confidence 9999999998 4455555554 455667889999999999999999999888654
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.94 E-value=1.9e-23 Score=219.87 Aligned_cols=381 Identities=21% Similarity=0.213 Sum_probs=319.5
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHH
Q 037562 251 DNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFV 330 (670)
Q Consensus 251 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~ 330 (670)
...+...|...|.|++.+ ......+...|+++.|+++|++++ .++...++.+|.+++- ..+++..+.+.|+++.|.
T Consensus 262 QeqLlrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m~~~giV~kL~ 337 (708)
T PF05804_consen 262 QEQLLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEMAESGIVEKLL 337 (708)
T ss_pred HHHHHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHH
Confidence 345666888889999876 566778899999999999999988 8999999999999998 788999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhH
Q 037562 331 KLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPAL 410 (670)
Q Consensus 331 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i 410 (670)
+++.+++.+++..++++|.|++.+ +..|..+.+.|.+|.|+.++.+ +..+..++.+|+++|..+..+......+++
T Consensus 338 kLl~s~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~d---~~~~~val~iLy~LS~dd~~r~~f~~TdcI 413 (708)
T PF05804_consen 338 KLLPSENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLKD---PNFREVALKILYNLSMDDEARSMFAYTDCI 413 (708)
T ss_pred HHhcCCCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhCC---CchHHHHHHHHHHhccCHhhHHHHhhcchH
Confidence 999999999999999999999965 5679999999999999999943 356677999999999988766666678899
Q ss_pred HHHHHhhcc-CChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHH
Q 037562 411 PVLAQLIRS-NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCII 489 (670)
Q Consensus 411 ~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~ 489 (670)
|.+++++-. +++.+...++..+.|++... .+.+.+.+.++++.|+...-.... ...+.++.|++.+++.....+.
T Consensus 414 p~L~~~Ll~~~~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f~ 489 (708)
T PF05804_consen 414 PQLMQMLLENSEEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELFV 489 (708)
T ss_pred HHHHHHHHhCCCccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHHH
Confidence 999987654 56777888889999999764 566778888899998888655432 2345789999998754444333
Q ss_pred hCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcC--ChhHHHHHHHHHHHhcCCCC
Q 037562 490 NCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNT--EFDTKKEAAWAISNATKFGT 567 (670)
Q Consensus 490 ~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~ 567 (670)
+++..|+..+..+.+++..-++.++|+|+...+.+..+.+.+.+++|.+.+.+..+ ++++..+++..++.++. +
T Consensus 490 --~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~--d 565 (708)
T PF05804_consen 490 --DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS--D 565 (708)
T ss_pred --HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC--C
Confidence 47888888888776888999999999999876666666666789999999999844 46899999999999998 7
Q ss_pred HHHHHHHHHcCCcHHHHhhccC--CChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCC
Q 037562 568 HEQIKHLVREGCVKPLCDLLLC--ADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHD 645 (670)
Q Consensus 568 ~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~ 645 (670)
+..+..+.+.|.++.|+++++. +|.+++.+.+.++++++...+. +..++.+.++...+-.|.++.
T Consensus 566 ~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~t-------------r~~ll~~~~~~~ylidL~~d~ 632 (708)
T PF05804_consen 566 PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEET-------------REVLLKETEIPAYLIDLMHDK 632 (708)
T ss_pred HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHH-------------HHHHHhccchHHHHHHHhcCC
Confidence 8889999999999999999954 5688999999999999977554 355778899999999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 037562 646 DNGISEKAVEILETY 660 (670)
Q Consensus 646 ~~~v~~~a~~~l~~~ 660 (670)
|++|++.|..++.-.
T Consensus 633 N~~ir~~~d~~Ldii 647 (708)
T PF05804_consen 633 NAEIRKVCDNALDII 647 (708)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999988777654
No 10
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.94 E-value=1.1e-23 Score=221.53 Aligned_cols=361 Identities=19% Similarity=0.238 Sum_probs=304.0
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT 317 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 317 (670)
+.++.|++.|.+++.++...++..|.+++.. .++...+.+.|+++.|++++.+++ .+++..|+++|.|++. +++.|
T Consensus 290 ~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~~aLrlL~NLSf-d~~~R 365 (708)
T PF05804_consen 290 GIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVNVALRLLFNLSF-DPELR 365 (708)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHHHHHHHHHHhCc-CHHHH
Confidence 6799999999999999999999999999776 678899999999999999999988 8999999999999998 89999
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562 318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG 397 (670)
Q Consensus 318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 397 (670)
..+++.|++|.|+.+|.++ ..+..|+.+|.+++.++ ..|..+...++++.+++++...+++.+...+++.+.|++.+
T Consensus 366 ~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd-~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~ 442 (708)
T PF05804_consen 366 SQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDD-EARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALN 442 (708)
T ss_pred HHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCH-hhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcC
Confidence 9999999999999999864 46677999999999754 57888888899999999987877888888899999999999
Q ss_pred CCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCC-CccchhHHHHHHHH
Q 037562 398 KPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHS-SSSVLTPALRTIRN 476 (670)
Q Consensus 398 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~ 476 (670)
..+.......++++.|++..-.....+ .+..++|++.+++.....+. +++..++..+..+ +++....++++|+|
T Consensus 443 ~rnaqlm~~g~gL~~L~~ra~~~~D~l---LlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaN 517 (708)
T PF05804_consen 443 KRNAQLMCEGNGLQSLMKRALKTRDPL---LLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILAN 517 (708)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhcccHH---HHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHh
Confidence 866665555678888876654332222 35799999988754333333 5778888888764 56789999999999
Q ss_pred hhcCCchhhHHHHhCCChHHHHHhhccCC-chhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh--cCChhHHH
Q 037562 477 IVKGDDFQTQCIINCGALPYFLDMLVHNH-EESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ--NTEFDTKK 553 (670)
Q Consensus 477 l~~~~~~~~~~l~~~~~~~~L~~~l~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~--~~~~~v~~ 553 (670)
+...+......+.+.+++|.+.+.|..+. .+++.-+++..++.++. ++.....+.+.|+++.|+.++. .+|.++..
T Consensus 518 L~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~Vl 596 (708)
T PF05804_consen 518 LTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVL 596 (708)
T ss_pred cccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHH
Confidence 99876666666667899999999997653 55788899999998875 5777888889999999999998 45789999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHH-HcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhh
Q 037562 554 EAAWAISNATKFGTHEQIKHLV-REGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEM 613 (670)
Q Consensus 554 ~a~~aL~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~ 613 (670)
+.++++.++..+ ++.+..++ +.+++..|++++++.+++++..|-.+|.-+....+...
T Consensus 597 Qil~~f~~ll~h--~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~ 655 (708)
T PF05804_consen 597 QILYVFYQLLFH--EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWA 655 (708)
T ss_pred HHHHHHHHHHcC--hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 999999999996 35556665 58899999999999999999999999999988776654
No 11
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.84 E-value=7.5e-19 Score=180.41 Aligned_cols=368 Identities=20% Similarity=0.247 Sum_probs=286.2
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch--hH
Q 037562 282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPR--CR 359 (670)
Q Consensus 282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~--~~ 359 (670)
-+|..+.+|.+.+ +.+|..|+..+..++.++.+.+..+.+.|+|+.++.++.+.+.+|+.+|+++|.||..+... .+
T Consensus 234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK 312 (717)
T KOG1048|consen 234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK 312 (717)
T ss_pred ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence 4778899999999 89999999999999999999999999999999999999999999999999999999976655 77
Q ss_pred HHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhcc--------------CChhHH
Q 037562 360 DLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRS--------------NDEEVL 425 (670)
Q Consensus 360 ~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~--------------~~~~v~ 425 (670)
-.+.+.++++.+++++....|.++++.+..+|+||++.+ .....++...++.|..-.-. .+.++.
T Consensus 313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf 391 (717)
T KOG1048|consen 313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF 391 (717)
T ss_pred hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence 788899999999999988899999999999999999984 33344445555555443321 136788
Q ss_pred HHHHHHHHHhccCChHHHHHHHH-cCCHHHHHHhcCC------CCccchhHHHHHHHHhhcCCch---------------
Q 037562 426 TDACWALSYLSDGTNDKVQAVIE-AGVYPRLVELLGH------SSSSVLTPALRTIRNIVKGDDF--------------- 483 (670)
Q Consensus 426 ~~al~~L~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~--------------- 483 (670)
.++..||+|++....+..+.+.+ .|+|..|+..+++ .+....+++.-++.|++..-..
T Consensus 392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~ 471 (717)
T KOG1048|consen 392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR 471 (717)
T ss_pred ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence 99999999999866666666655 4889999988873 3556778888888888742210
Q ss_pred ----------------hhHH----------------------HHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCH
Q 037562 484 ----------------QTQC----------------------IINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNR 525 (670)
Q Consensus 484 ----------------~~~~----------------------l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~ 525 (670)
..+. +....++.....++....++.+.+.++++|.|++++..
T Consensus 472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~ 551 (717)
T KOG1048|consen 472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW 551 (717)
T ss_pred cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence 0000 01112334444555544478899999999999998432
Q ss_pred ----HHHHHH-HhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCC------ChHH
Q 037562 526 ----EQIQAV-IDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCA------DPKI 594 (670)
Q Consensus 526 ----~~~~~l-~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~------~~~v 594 (670)
.....+ .+..+++.++++++.++..|...++.+|.|++.. ... +.++..++++.|++.|... +.++
T Consensus 552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d--~rn-k~ligk~a~~~lv~~Lp~~~~~~~~sedt 628 (717)
T KOG1048|consen 552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD--IRN-KELIGKYAIPDLVRCLPGSGPSTSLSEDT 628 (717)
T ss_pred cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC--chh-hhhhhcchHHHHHHhCcCCCCCcCchHHH
Confidence 223333 5778999999999999999999999999999994 343 4456688999999999543 3578
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhc-CCCHHHHHHHHHHHHHhcCCcccc
Q 037562 595 VTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQS-HDDNGISEKAVEILETYWSSRVIG 667 (670)
Q Consensus 595 ~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~-~~~~~v~~~a~~~l~~~~~~~~~~ 667 (670)
...++..+.+++...... ...+.+.+++++|..+.. ..++.+.+.|..++..+|+.++-+
T Consensus 629 v~~vc~tl~niv~~~~~n-------------Akdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eLh 689 (717)
T KOG1048|consen 629 VRAVCHTLNNIVRKNVLN-------------AKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKELH 689 (717)
T ss_pred HHHHHHhHHHHHHHhHHH-------------HHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999998654332 334558999999988854 456688999999999999887654
No 12
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=5e-18 Score=173.21 Aligned_cols=391 Identities=20% Similarity=0.298 Sum_probs=311.5
Q ss_pred ccHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 037562 238 EILPAMVDGVWSD-DNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN 316 (670)
Q Consensus 238 ~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~ 316 (670)
+.+.+|++.++.+ |+..|.+|+..|+.+....+.+...-+--..++|.|+.+|+.+.+.+++..|+++|++++.-.|..
T Consensus 167 Sk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 167 SKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 3578999999865 999999999999999887656555544455689999999999988999999999999999989999
Q ss_pred HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhh
Q 037562 317 TKVVIDHGAVPIFVKLLAS-PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFC 395 (670)
Q Consensus 317 ~~~i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~ 395 (670)
...+++.++||.|+.-|.. +..++.++++.+|..|+...+ ..+++.|++...+.++ +.-+..+++.|+.+.+|+|
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~C 322 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYL-DFFSIHAQRVALAIAANCC 322 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999986654 889999999999999997765 4678999999999999 7778899999999999999
Q ss_pred cCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhcc---CChHHHHHHHHcCCHHHHHHhcCCCC----ccchh
Q 037562 396 RGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSD---GTNDKVQAVIEAGVYPRLVELLGHSS----SSVLT 468 (670)
Q Consensus 396 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~---~~~~~~~~~~~~~~i~~L~~lL~~~~----~~v~~ 468 (670)
..-+...+..+...+|.|..+|+..|....+.++.|+..++. +.++..+.+...|++.....++.-.. ..+..
T Consensus 323 ksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~ 402 (1051)
T KOG0168|consen 323 KSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYT 402 (1051)
T ss_pred hcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchh
Confidence 998888888899999999999999999999999999999884 35677777888999999999987643 34566
Q ss_pred HHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCC---c----------hhHHHHHHHHH------------------
Q 037562 469 PALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNH---E----------ESIKKEVSWII------------------ 517 (670)
Q Consensus 469 ~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~---~----------~~v~~~a~~~L------------------ 517 (670)
..++.+..++.+.+.....+.+.++...+..+|.... + +.-..+....+
T Consensus 403 ~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~ 482 (1051)
T KOG0168|consen 403 GVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCS 482 (1051)
T ss_pred HHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhh
Confidence 7788888888887877777777777777777764310 0 00000000000
Q ss_pred ------------------------------HHhhc--------------------------CCHHHHHHHHhcCChHHHH
Q 037562 518 ------------------------------SNITC--------------------------GNREQIQAVIDSGLIGPIV 541 (670)
Q Consensus 518 ------------------------------~~l~~--------------------------~~~~~~~~l~~~~~i~~L~ 541 (670)
..+.. ..++..+.+++ .++|.|+
T Consensus 483 ~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLv 561 (1051)
T KOG0168|consen 483 LIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLV 561 (1051)
T ss_pred hhcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHH
Confidence 00000 11222222332 4788999
Q ss_pred HHhh-cCChhHHHHHHHHHHHhcCCCCHHHHHHHHH-cCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCC
Q 037562 542 NLLQ-NTEFDTKKEAAWAISNATKFGTHEQIKHLVR-EGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAV 619 (670)
Q Consensus 542 ~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 619 (670)
++.. +.++.||..++.||..+....+.+.+..++. ..+-..+..++.++|..|..-|+.....+++.-..
T Consensus 562 eVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKlpd-------- 633 (1051)
T KOG0168|consen 562 EVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKLPD-------- 633 (1051)
T ss_pred HHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHhHH--------
Confidence 9888 4589999999999999999888888887775 45566677899999999999999999988875433
Q ss_pred CCccHHHHHHHHhchHHHHHHhhcCC
Q 037562 620 GDFNQYAQLVEEAEGLEKIENLQSHD 645 (670)
Q Consensus 620 ~~~~~~~~~~~~~g~~~~l~~L~~~~ 645 (670)
.|...|.+.|.+..+.+|....
T Consensus 634 ----~F~~~F~REGV~~~v~~L~~~~ 655 (1051)
T KOG0168|consen 634 ----TFSPSFRREGVFHAVKQLSVDS 655 (1051)
T ss_pred ----HhhhhHhhhhHHHHHHHHhccC
Confidence 4677899999999999997633
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.78 E-value=7.4e-17 Score=165.91 Aligned_cols=363 Identities=19% Similarity=0.227 Sum_probs=278.2
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh--h
Q 037562 239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSE--N 316 (670)
Q Consensus 239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~--~ 316 (670)
.+|..+.++.+.++.+|..|+..+..+...+ +.....+.+.|+++.|+.++.+.. .+|+.+|+++|.|+..++.. +
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~~~~N 311 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKSTDSN 311 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccCCccc
Confidence 4789999999999999999999998775543 666678889999999999999999 89999999999999987655 8
Q ss_pred HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc-------------cCChh
Q 037562 317 TKVVIDHGAVPIFVKLLAS-PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE-------------NANLS 382 (670)
Q Consensus 317 ~~~i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~-------------~~~~~ 382 (670)
+-.+.+.++++.++++|+. .|.++++.+..+|+||+..+ ..+..++.. .+..|...+.. ..+.+
T Consensus 312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~ 389 (717)
T KOG1048|consen 312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDST 389 (717)
T ss_pred chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccce
Confidence 8899999999999999987 89999999999999999773 455555443 45666554421 11357
Q ss_pred HHHHHHHHHHhhhcCCCCC--ChhhhhhhHHHHHHhhc------cCChhHHHHHHHHHHHhccCCh-----HHHHH----
Q 037562 383 MLRTATWTLFNFCRGKPQP--PFNQVRPALPVLAQLIR------SNDEEVLTDACWALSYLSDGTN-----DKVQA---- 445 (670)
Q Consensus 383 ~~~~a~~~L~~l~~~~~~~--~~~~~~~~i~~L~~lL~------~~~~~v~~~al~~L~~l~~~~~-----~~~~~---- 445 (670)
+..++.+||.|++...... ......|.|..|+..++ ..|....+++..+++|++..-. ...+.
T Consensus 390 vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~ 469 (717)
T KOG1048|consen 390 VFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANI 469 (717)
T ss_pred eeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcc
Confidence 8889999999999865332 22333788999888876 2367788899999999885422 00000
Q ss_pred --------------------------------------------HHHcCCHHHHHHhcC-CCCccchhHHHHHHHHhhcC
Q 037562 446 --------------------------------------------VIEAGVYPRLVELLG-HSSSSVLTPALRTIRNIVKG 480 (670)
Q Consensus 446 --------------------------------------------~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~ 480 (670)
+....++..-..+|. +.+..+.+.++.+|-|++.+
T Consensus 470 ~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~ 549 (717)
T KOG1048|consen 470 ARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAG 549 (717)
T ss_pred cccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhcc
Confidence 001112333233333 34566889999999999986
Q ss_pred Cchh----hHHH-HhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcC------Ch
Q 037562 481 DDFQ----TQCI-INCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNT------EF 549 (670)
Q Consensus 481 ~~~~----~~~l-~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~------~~ 549 (670)
.... ...+ .+..+++.+++++..+ ++.|...++.+|.|++.+ .. .+.++..++++.|++.|... +.
T Consensus 550 ~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d-~r-nk~ligk~a~~~lv~~Lp~~~~~~~~se 626 (717)
T KOG1048|consen 550 LWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRD-IR-NKELIGKYAIPDLVRCLPGSGPSTSLSE 626 (717)
T ss_pred CCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccC-ch-hhhhhhcchHHHHHHhCcCCCCCcCchH
Confidence 5432 3333 5778999999999999 999999999999999774 33 34455578999999999843 36
Q ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCC-ChHHHHHHHHHHHHHHHhh
Q 037562 550 DTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCA-DPKIVTVCLEGLENILKVG 609 (670)
Q Consensus 550 ~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~ 609 (670)
++...++.+|.++... +....+.+.+.++++.|+.+.++. ++.+.++|...+..+=.+.
T Consensus 627 dtv~~vc~tl~niv~~-~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~ 686 (717)
T KOG1048|consen 627 DTVRAVCHTLNNIVRK-NVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYK 686 (717)
T ss_pred HHHHHHHHhHHHHHHH-hHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence 8999999999999976 788999999999999999999764 5578888877777765443
No 14
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.75 E-value=2.8e-16 Score=168.13 Aligned_cols=362 Identities=18% Similarity=0.198 Sum_probs=278.1
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC--CHHHHHHHHHHHHHHcCCChhhHH
Q 037562 241 PAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQD--YPQLQFKAAWALTNIASGTSENTK 318 (670)
Q Consensus 241 ~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~--~~~v~~~a~~~L~~l~~~~~~~~~ 318 (670)
..++.++...|. ..-++.|..+.+. .+....+...|.++.|++++.-++ ..+.+..|-.+|.||....++.+.
T Consensus 200 ~sllsml~t~D~---ee~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr 274 (2195)
T KOG2122|consen 200 NSLLSMLGTDDE---EEMARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKR 274 (2195)
T ss_pred hHHhhhcccCCH---HHHHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhh
Confidence 345555555544 3344566666554 667788999999999999996553 267899999999999986655544
Q ss_pred HHHhCCChHHHHH----------hhCC-----CCHHHHH---HHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccc--
Q 037562 319 VVIDHGAVPIFVK----------LLAS-----PSVDVRK---QTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEN-- 378 (670)
Q Consensus 319 ~i~~~~~i~~L~~----------lL~~-----~~~~v~~---~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~-- 378 (670)
.=.+..++..|-+ .+.. .+..+.. .|+.+|..++ .+.+.|..+.+.|++.++-+++.-+
T Consensus 275 ~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~S-FDEEhR~aM~ELG~LqAIaeLl~vDh~ 353 (2195)
T KOG2122|consen 275 GRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLS-FDEEHRHAMNELGGLQAIAELLQVDHE 353 (2195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhh-ccHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3333333332221 1211 1222222 4556666665 4567899999999999998877321
Q ss_pred ---------CChhHHHHHHHHHHhhhcCCCCC--ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHH-H
Q 037562 379 ---------ANLSMLRTATWTLFNFCRGKPQP--PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQA-V 446 (670)
Q Consensus 379 ---------~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~-~ 446 (670)
....+++++..+|.||..++... ......|++..++..|.+..+++..-.+.+|+||+-..+..... +
T Consensus 354 mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvL 433 (2195)
T KOG2122|consen 354 MHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVL 433 (2195)
T ss_pred hcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHH
Confidence 12378999999999999988333 33344899999999999988899999999999999766655555 4
Q ss_pred HHcCCHHHHHHh-cCCCCccchhHHHHHHHHhhcCCchhhHHHH-hCCChHHHHHhhccCC---chhHHHHHHHHHHHhh
Q 037562 447 IEAGVYPRLVEL-LGHSSSSVLTPALRTIRNIVKGDDFQTQCII-NCGALPYFLDMLVHNH---EESIKKEVSWIISNIT 521 (670)
Q Consensus 447 ~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~~~~L~~~l~~~~---~~~v~~~a~~~L~~l~ 521 (670)
.+.|-+..|+.+ +....+......+.+||||+.+..+....+. -.|.+.+|+.+|.... .-.+.+.|.++|.|..
T Consensus 434 rE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVS 513 (2195)
T KOG2122|consen 434 RETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVS 513 (2195)
T ss_pred HhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHH
Confidence 556777777766 5556777889999999999998876666555 4589999999998652 4467888999999986
Q ss_pred c---CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHH
Q 037562 522 C---GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVC 598 (670)
Q Consensus 522 ~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 598 (670)
. ..+++++.+.+++++..|+..|++.+..+..++|++|.||+.. +++..++|++.|+++.|..++++++..+..-+
T Consensus 514 S~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GS 592 (2195)
T KOG2122|consen 514 SLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGS 592 (2195)
T ss_pred hHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC-CHHHHHHHHhcccHHHHHHHHhhhhhhhhhhH
Confidence 5 5788889999999999999999999999999999999999998 78888999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 037562 599 LEGLENILKVG 609 (670)
Q Consensus 599 ~~~l~~l~~~~ 609 (670)
..+|.|++..-
T Consensus 593 aaALrNLln~R 603 (2195)
T KOG2122|consen 593 AAALRNLLNFR 603 (2195)
T ss_pred HHHHHHHhcCC
Confidence 99999998654
No 15
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.73 E-value=2.5e-14 Score=150.22 Aligned_cols=367 Identities=16% Similarity=0.183 Sum_probs=278.1
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH
Q 037562 284 PRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVL 363 (670)
Q Consensus 284 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 363 (670)
+.+...+++.+ .+....++.+|..+.. ....... ..+..+.+...|.++++.+|..+++.+++++.++......+.
T Consensus 41 ~~lf~~L~~~~-~e~v~~~~~iL~~~l~-~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 41 PVLFDCLNTSN-REQVELICDILKRLLS-ALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred HHHHHHHhhcC-hHHHHHHHHHHHHHHh-ccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 33778888777 6777888899999877 2222222 346778999999999999999999999999988877777888
Q ss_pred hcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHH
Q 037562 364 SQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKV 443 (670)
Q Consensus 364 ~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~ 443 (670)
+.+.++.++..+ .+++..+...|+.+|.+++...+........+.++.|..++...++.+|..++.++.+++..+++..
T Consensus 117 ~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~ 195 (503)
T PF10508_consen 117 DNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA 195 (503)
T ss_pred CccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence 889999999999 8889999999999999999876544444446668889999988888999999999999999999999
Q ss_pred HHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCC-ch---h-HHHHHHHHHH
Q 037562 444 QAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNH-EE---S-IKKEVSWIIS 518 (670)
Q Consensus 444 ~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~-~~---~-v~~~a~~~L~ 518 (670)
..+.+.|+++.++..+.++|.-++.+|+.++..++. .+...+.+.+.|+++.|..++.+.. ++ . .--......+
T Consensus 196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g 274 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG 274 (503)
T ss_pred HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence 999999999999999999888899999999999999 6677888999999999999997653 22 0 1122335566
Q ss_pred HhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHH-HHcC-----CcHHHHhhccCCCh
Q 037562 519 NITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHL-VREG-----CVKPLCDLLLCADP 592 (670)
Q Consensus 519 ~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l-~~~~-----~i~~L~~ll~~~~~ 592 (670)
+++...+....... ..++..+.+++.+.|...+..|..+++.++. +.+....+ ...+ ++........+...
T Consensus 275 ~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~ 351 (503)
T PF10508_consen 275 NLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGST 351 (503)
T ss_pred HHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCch
Confidence 66654444332222 2356677777888999999999999999997 56766666 3322 35555556677888
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhch--HH-HHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 037562 593 KIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEG--LE-KIENLQSHDDNGISEKAVEILETYWSS 663 (670)
Q Consensus 593 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~-~l~~L~~~~~~~v~~~a~~~l~~~~~~ 663 (670)
+++.+++.++.+++...+..... .-.+-....+...+. .. .+..+...+=+|++..+..++..+...
T Consensus 352 ~lk~r~l~al~~il~~~~~~~~~----~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 352 ELKLRALHALASILTSGTDRQDN----DILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred HHHHHHHHHHHHHHhcCCCCchH----HHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 99999999999998765531100 000111222222222 22 456667778899999999999887654
No 16
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.72 E-value=6.8e-16 Score=146.39 Aligned_cols=352 Identities=16% Similarity=0.147 Sum_probs=257.7
Q ss_pred CCChHHHHHHHHHHHHHhcCC--CCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCCh
Q 037562 249 SDDNSLQLEATTLFINLLSFD--RSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAV 326 (670)
Q Consensus 249 ~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i 326 (670)
..+..+...+..++...+..+ ++...+.-+..+++..|.+...+++ .++..+++++|+|++..+.+.|..+.+.|+-
T Consensus 53 ~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGa 131 (604)
T KOG4500|consen 53 TASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGA 131 (604)
T ss_pred eccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCc
Confidence 344556666777777775431 1122233355677888888888887 7999999999999999999999999999998
Q ss_pred HHHHHhhCC-------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccc-CChhHHHHHHHHHHhhhcCC
Q 037562 327 PIFVKLLAS-------PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEN-ANLSMLRTATWTLFNFCRGK 398 (670)
Q Consensus 327 ~~L~~lL~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~-~~~~~~~~a~~~L~~l~~~~ 398 (670)
+.++++|+. .+.+....+...|.|..-++.+.+..+.+.|+++.|...+--+ .+....+.......|+.+-.
T Consensus 132 qivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~ 211 (604)
T KOG4500|consen 132 QIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFV 211 (604)
T ss_pred eehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHH
Confidence 888888875 2346667788899999999999999999999999888877322 23333334443344433221
Q ss_pred C--CCChhhhhhhHHHHHHhhccC-ChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC-CCcc-------ch
Q 037562 399 P--QPPFNQVRPALPVLAQLIRSN-DEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH-SSSS-------VL 467 (670)
Q Consensus 399 ~--~~~~~~~~~~i~~L~~lL~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~-------v~ 467 (670)
. ...+.......-.+++++.+. ++++.+.+...++..++++..... +.+.|.+..++.+++. ++.. .-
T Consensus 212 ~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~-la~~gl~e~~~~lv~~~k~~t~k~d~~~l~ 290 (604)
T KOG4500|consen 212 CEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLS-LAQNGLLEDSIDLVRNMKDFTKKTDMLNLF 290 (604)
T ss_pred HHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeee-hhhcchHHHHHHHHHhcccccchHHHHHHH
Confidence 1 112222344555667777644 677888888999998877654433 7777999999998876 3222 22
Q ss_pred hHHHHHHHHhhcCCchhhHHHHhCC-ChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhc
Q 037562 468 TPALRTIRNIVKGDDFQTQCIINCG-ALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQN 546 (670)
Q Consensus 468 ~~a~~~L~~l~~~~~~~~~~l~~~~-~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~ 546 (670)
..++....-+..+++.. +.+...+ +++.+.+++.++ +......+..+++|+++. ++...++++.+++..|++++..
T Consensus 291 k~~~el~vllltGDeSM-q~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~-D~~ci~~v~~~~~nkL~~~l~~ 367 (604)
T KOG4500|consen 291 KRIAELDVLLLTGDESM-QKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARR-DDICIQLVQKDFLNKLISCLMQ 367 (604)
T ss_pred HhhhhHhhhhhcCchHH-HHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555443 4455444 899999999999 999999999999999876 5566788899999999999873
Q ss_pred -----CChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHH
Q 037562 547 -----TEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILK 607 (670)
Q Consensus 547 -----~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~ 607 (670)
++.+++..++.||.|+.-. ......++..|+.+.+...++...|.+...-+..+.-+..
T Consensus 368 ~~~vdgnV~~qhA~lsALRnl~IP--v~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d 431 (604)
T KOG4500|consen 368 EKDVDGNVERQHACLSALRNLMIP--VSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRD 431 (604)
T ss_pred hcCCCccchhHHHHHHHHHhcccc--CCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHh
Confidence 5678999999999999883 4566788999999999999999999999888888775543
No 17
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.72 E-value=7.3e-14 Score=146.78 Aligned_cols=396 Identities=16% Similarity=0.176 Sum_probs=291.3
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHH
Q 037562 242 AMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVI 321 (670)
Q Consensus 242 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 321 (670)
.++..+...+.+....++..|..+.... .. ..+ ..+..+.+...|.+++ +.||..+++.+++++.++....+.+.
T Consensus 42 ~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~-~~l-~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~~ 116 (503)
T PF10508_consen 42 VLFDCLNTSNREQVELICDILKRLLSAL--SP-DSL-LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLLV 116 (503)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhcc--CH-HHH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence 3777788777777788888888887652 22 222 4557888999999999 89999999999999997777788888
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCC
Q 037562 322 DHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQP 401 (670)
Q Consensus 322 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 401 (670)
+.++++.++..+.+++..+...|+.+|.+++...+.. +.++..+.+..|..++ ...+..++..+..++.+++..++..
T Consensus 117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHHH
Confidence 9999999999999999999999999999999876654 4566777788888888 5556677888999999998876443
Q ss_pred C-hhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCcc------chhHHHHHH
Q 037562 402 P-FNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSS------VLTPALRTI 474 (670)
Q Consensus 402 ~-~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~------v~~~a~~~L 474 (670)
. .....|+++.++..++++|.-++.+++.++..++. .+...+.+.+.|+++.|..++.+.+.+ ..-..+...
T Consensus 195 ~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~ 273 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF 273 (503)
T ss_pred HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence 3 33337899999999999999999999999999998 455677789999999999999874322 223344677
Q ss_pred HHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHH-Hhc-CC----hHHHHHHhhcCC
Q 037562 475 RNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAV-IDS-GL----IGPIVNLLQNTE 548 (670)
Q Consensus 475 ~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l-~~~-~~----i~~L~~ll~~~~ 548 (670)
++++...+....... ..++..+..++.+. ++..+..|..+++.++.. .+....+ .+. +. +........++.
T Consensus 274 g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~ 350 (503)
T PF10508_consen 274 GNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSGS 350 (503)
T ss_pred HHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCCc
Confidence 788775333222111 23556667777788 999999999999999754 4555555 332 23 444444455677
Q ss_pred hhHHHHHHHHHHHhcCCCCH---HH----HHHH---HHcCCcH-HHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCC
Q 037562 549 FDTKKEAAWAISNATKFGTH---EQ----IKHL---VREGCVK-PLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGT 617 (670)
Q Consensus 549 ~~v~~~a~~aL~~l~~~~~~---~~----~~~l---~~~~~i~-~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 617 (670)
.++|..+..++.++...+.+ +. .+.. ...+-.. .+..+++.+-++++.++...+..++... +.
T Consensus 351 ~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~-Wg----- 424 (503)
T PF10508_consen 351 TELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQP-WG----- 424 (503)
T ss_pred hHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCH-HH-----
Confidence 89999999999999654332 11 1111 1233444 7888889999999999999999988653 22
Q ss_pred CCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562 618 AVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYW 661 (670)
Q Consensus 618 ~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~ 661 (670)
...++...|.++.+.+=....+.+.++.--.++..+.
T Consensus 425 -------~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 425 -------QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA 461 (503)
T ss_pred -------HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 3456666777777655455556666655555555443
No 18
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=4.2e-14 Score=136.12 Aligned_cols=382 Identities=18% Similarity=0.155 Sum_probs=294.1
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHH
Q 037562 249 SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPI 328 (670)
Q Consensus 249 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~ 328 (670)
....++...|...|.|++.+ ...-..+....++..|++.|+.++ .++...+...|..++- ..+++..+.+.|++..
T Consensus 274 ~KQeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveK 349 (791)
T KOG1222|consen 274 RKQEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEK 349 (791)
T ss_pred HHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHH
Confidence 34567788888999999876 444567888889999999999988 7999999999999987 7788889999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhh
Q 037562 329 FVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRP 408 (670)
Q Consensus 329 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 408 (670)
|+++....+++++..++..+.|++.+. ..|..+++.|.+|.+..++.++.. ..-|...++.++.++..........
T Consensus 350 L~klfp~~h~dL~~~tl~LlfNlSFD~-glr~KMv~~GllP~l~~ll~~d~~---~~iA~~~lYh~S~dD~~K~MfayTd 425 (791)
T KOG1222|consen 350 LLKLFPIQHPDLRKATLMLLFNLSFDS-GLRPKMVNGGLLPHLASLLDSDTK---HGIALNMLYHLSCDDDAKAMFAYTD 425 (791)
T ss_pred HHHhcCCCCHHHHHHHHHHhhhccccc-cccHHHhhccchHHHHHHhCCccc---chhhhhhhhhhccCcHHHHHHHHHH
Confidence 999999999999999999999999665 468889999999999999944332 2346778888888877777777788
Q ss_pred hHHHHHHhhcc-CChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHh-cCCCCccchhHHHHHHHHhhcCCchhhH
Q 037562 409 ALPVLAQLIRS-NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVEL-LGHSSSSVLTPALRTIRNIVKGDDFQTQ 486 (670)
Q Consensus 409 ~i~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~ 486 (670)
+++.+.+.+-+ .+.+|-...+..-.|++-+ ..+.+.+.+..++..++.. +++.+. .-...+.|++.+......
T Consensus 426 ci~~lmk~v~~~~~~~vdl~lia~ciNl~ln-kRNaQlvceGqgL~~LM~ra~k~~D~----lLmK~vRniSqHeg~tqn 500 (791)
T KOG1222|consen 426 CIKLLMKDVLSGTGSEVDLALIALCINLCLN-KRNAQLVCEGQGLDLLMERAIKSRDL----LLMKVVRNISQHEGATQN 500 (791)
T ss_pred HHHHHHHHHHhcCCceecHHHHHHHHHHHhc-cccceEEecCcchHHHHHHHhcccch----HHHHHHHHhhhccchHHH
Confidence 99998876654 4556655555555566643 2244556666677776655 344443 234667888887665555
Q ss_pred HHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcC--ChhHHHHHHHHHHHhcC
Q 037562 487 CIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNT--EFDTKKEAAWAISNATK 564 (670)
Q Consensus 487 ~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~ 564 (670)
.+++ .+.-|...++...+...-.++.++++|+...+-+..+.+-+.+.+|-+-..+..+ ..+++...+.+++.++.
T Consensus 501 ~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~ 578 (791)
T KOG1222|consen 501 MFID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR 578 (791)
T ss_pred HHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh
Confidence 5554 5677777777665677888999999999887666667777889999999998843 45788888889999888
Q ss_pred CCCHHHHHHHHHcCCcHHHHhhccC--CChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhh
Q 037562 565 FGTHEQIKHLVREGCVKPLCDLLLC--ADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQ 642 (670)
Q Consensus 565 ~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~ 642 (670)
+...+..+...++|+.|+++++. .|.+.+.+.+..+..++..... ..-++.+...-..+-.|+
T Consensus 579 --d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~t-------------r~~miket~~~AylIDLM 643 (791)
T KOG1222|consen 579 --DLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELT-------------RRLMIKETALGAYLIDLM 643 (791)
T ss_pred --hhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH-------------HHHHHhhccchHHHHHHH
Confidence 56777888899999999999964 5667888888888888876433 244667777777789999
Q ss_pred cCCCHHHHHHHHHHHHHh
Q 037562 643 SHDDNGISEKAVEILETY 660 (670)
Q Consensus 643 ~~~~~~v~~~a~~~l~~~ 660 (670)
++.+.++++-+...+.-+
T Consensus 644 HDkN~eiRkVCDn~LdIi 661 (791)
T KOG1222|consen 644 HDKNAEIRKVCDNALDII 661 (791)
T ss_pred hcccHHHHHHHHHHHHHH
Confidence 999999998776665543
No 19
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=2.6e-14 Score=131.56 Aligned_cols=311 Identities=12% Similarity=0.113 Sum_probs=255.2
Q ss_pred cCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHcCCChhhHHHHHhCCCh
Q 037562 248 WSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQ-DYPQLQFKAAWALTNIASGTSENTKVVIDHGAV 326 (670)
Q Consensus 248 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i 326 (670)
.+++..+...++.+|..+.... ..+.+..++..++.+|... +..++......++..-+...+.+|+.+++.+++
T Consensus 117 ~~~~~~~l~ksL~al~~lt~~q-----pdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il 191 (461)
T KOG4199|consen 117 ESPNESVLKKSLEAINSLTHKQ-----PDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKIL 191 (461)
T ss_pred hCCchhHHHHHHHHHHHhhcCC-----cchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHH
Confidence 4678889999999998885542 3466777889999988543 337888899999999888899999999999999
Q ss_pred HHHHHhhCC-CCHHHHHHHHHHHHHhhCCCc---------hhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhc
Q 037562 327 PIFVKLLAS-PSVDVRKQTVWALGNVAGDSP---------RCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCR 396 (670)
Q Consensus 327 ~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~---------~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~ 396 (670)
+.+.+.+.. ...++...+.|++.-+..++. .....+...|++..|+..+....++++...++.+|..++-
T Consensus 192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAV 271 (461)
T KOG4199|consen 192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAV 271 (461)
T ss_pred HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHH
Confidence 999977655 444677788999998876543 3456677788899999999888899999999999999998
Q ss_pred CCCCCChhhhhhhHHHHHHhhccC-Chh---HHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC--CCccchhHH
Q 037562 397 GKPQPPFNQVRPALPVLAQLIRSN-DEE---VLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH--SSSSVLTPA 470 (670)
Q Consensus 397 ~~~~~~~~~~~~~i~~L~~lL~~~-~~~---v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a 470 (670)
.+.........|++..++.++.+. +.. ....++..|+.++.+++ ....+++.|+.+.++.++.. +++.|...+
T Consensus 272 r~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~Ds-vKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~ 350 (461)
T KOG4199|consen 272 RDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDS-VKSTIVEKGGLDKIITLALRHSDDPLVIQEV 350 (461)
T ss_pred HHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCc-hHHHHHHhcChHHHHHHHHHcCCChHHHHHH
Confidence 765556666789999999999874 333 44678888888886544 55668888999999988753 678899999
Q ss_pred HHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCC-chhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCCh
Q 037562 471 LRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNH-EESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEF 549 (670)
Q Consensus 471 ~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 549 (670)
+.+++-++-..++....+++.|+-...++.++..+ ...+++.|||.+.|++..+.++...++.. +++.|+......++
T Consensus 351 ~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~ 429 (461)
T KOG4199|consen 351 MAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHE 429 (461)
T ss_pred HHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCc
Confidence 99999999999999999999999999999997553 66799999999999999888877777764 67888888888888
Q ss_pred hHHHHHHHHHHHhcCC
Q 037562 550 DTKKEAAWAISNATKF 565 (670)
Q Consensus 550 ~v~~~a~~aL~~l~~~ 565 (670)
.....|-.||..+...
T Consensus 430 tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 430 TCEAAAKAALRDLGCD 445 (461)
T ss_pred cHHHHHHHHHHhcCcc
Confidence 8999999999988763
No 20
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=9.2e-14 Score=128.00 Aligned_cols=308 Identities=17% Similarity=0.188 Sum_probs=247.9
Q ss_pred hhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcC
Q 037562 289 FLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSVDVRKQTVWALGNVAGDSPRCRDLVLSQG 366 (670)
Q Consensus 289 ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~ 366 (670)
+-.+++ ..+-..++.+|..+..+.|+ +.++.+...++.+|.. ++.++-...+..+..-|...+.+|+.+.+.+
T Consensus 115 la~~~~-~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~ 189 (461)
T KOG4199|consen 115 LAESPN-ESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELK 189 (461)
T ss_pred HhhCCc-hhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 334455 67888888888888876665 5567889999998865 6778888888888888888888999999999
Q ss_pred ChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCC----------hhhhhhhHHHHHHhhccC-ChhHHHHHHHHHHHh
Q 037562 367 ALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPP----------FNQVRPALPVLAQLIRSN-DEEVLTDACWALSYL 435 (670)
Q Consensus 367 ~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~----------~~~~~~~i~~L~~lL~~~-~~~v~~~al~~L~~l 435 (670)
+.+.+...+.......+.+.++|++..+...+..+. .....+++..|+..++-. |+.+...++.+|..+
T Consensus 190 il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~l 269 (461)
T KOG4199|consen 190 ILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKAL 269 (461)
T ss_pred HHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHH
Confidence 999888888666666899999999999988764322 122255677888888754 789999999999999
Q ss_pred ccCChHHHHHHHHcCCHHHHHHhcCCCCc-c---chhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhc-cCCchhHH
Q 037562 436 SDGTNDKVQAVIEAGVYPRLVELLGHSSS-S---VLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLV-HNHEESIK 510 (670)
Q Consensus 436 ~~~~~~~~~~~~~~~~i~~L~~lL~~~~~-~---v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~-~~~~~~v~ 510 (670)
+.. ++..+.+.+.|++..++.++.+.+. . ....++..|..++. ++.....+++.|+.+.++.++. +..+|.|.
T Consensus 270 AVr-~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi 347 (461)
T KOG4199|consen 270 AVR-DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKIITLALRHSDDPLVI 347 (461)
T ss_pred HHH-HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHHHHHHHcCCChHHH
Confidence 975 5567889999999999999998433 3 44678888888886 5566777899999999999874 33389999
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcC--ChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhcc
Q 037562 511 KEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNT--EFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLL 588 (670)
Q Consensus 511 ~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~ 588 (670)
.+++.+++-++...|+....+++.|+-...++.++.. ...++++|++++.|+..+ +.+++..++.. +++.|+..-+
T Consensus 348 ~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r-s~~~~~~~l~~-GiE~Li~~A~ 425 (461)
T KOG4199|consen 348 QEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR-SAENRTILLAN-GIEKLIRTAK 425 (461)
T ss_pred HHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-hhhccchHHhc-cHHHHHHHHH
Confidence 9999999999999999999999999999999998843 468999999999999998 56676666665 6889999888
Q ss_pred CCChHHHHHHHHHHHHH
Q 037562 589 CADPKIVTVCLEGLENI 605 (670)
Q Consensus 589 ~~~~~v~~~a~~~l~~l 605 (670)
..++.....+-.+|..+
T Consensus 426 ~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 426 ANHETCEAAAKAALRDL 442 (461)
T ss_pred hcCccHHHHHHHHHHhc
Confidence 88888877777776654
No 21
>PRK09687 putative lyase; Provisional
Probab=99.68 E-value=5.2e-15 Score=142.20 Aligned_cols=255 Identities=15% Similarity=0.105 Sum_probs=204.5
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 037562 282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDL 361 (670)
Q Consensus 282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 361 (670)
-++.|...|.+++ ..+|..|+++|..+.. ..+++.+..++.++++.+|..++++|+.+...... +.
T Consensus 24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-~~- 89 (280)
T PRK09687 24 NDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-QD- 89 (280)
T ss_pred cHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-hH-
Confidence 5778899999999 8999999999998864 34578888899999999999999999998532211 11
Q ss_pred HHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChH
Q 037562 362 VLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTND 441 (670)
Q Consensus 362 i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~ 441 (670)
..++.|..++.++.++.|+..|+.+|.+++...... ...+++.+...+.++++.||..++.+|+.+...
T Consensus 90 ----~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~--- 158 (280)
T PRK09687 90 ----NVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVINDE--- 158 (280)
T ss_pred ----HHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH---
Confidence 246777777668889999999999999997554221 133566677888888999999999999877521
Q ss_pred HHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhh
Q 037562 442 KVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNIT 521 (670)
Q Consensus 442 ~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~ 521 (670)
..++.|+.++.++++.||..|+.+|+.+....+ .+++.|+..+.+. +..||..|+++|+.+.
T Consensus 159 --------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 159 --------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALRK 220 (280)
T ss_pred --------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHccC
Confidence 367889999999999999999999999843222 3567799999988 9999999999999973
Q ss_pred cCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhcc-CCChHHHHHHHH
Q 037562 522 CGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLL-CADPKIVTVCLE 600 (670)
Q Consensus 522 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~ 600 (670)
. + .+++.|++.+.+++ ++..|+.+|+++... . +++.|.++++ ++|+.++..+.+
T Consensus 221 ~--~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~~---~---------a~p~L~~l~~~~~d~~v~~~a~~ 275 (280)
T PRK09687 221 D--K---------RVLSVLIKELKKGT--VGDLIIEAAGELGDK---T---------LLPVLDTLLYKFDDNEIITKAID 275 (280)
T ss_pred C--h---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH---h---------HHHHHHHHHhhCCChhHHHHHHH
Confidence 2 2 37889999998765 778899999998762 2 6899999996 889999999998
Q ss_pred HHHH
Q 037562 601 GLEN 604 (670)
Q Consensus 601 ~l~~ 604 (670)
++..
T Consensus 276 a~~~ 279 (280)
T PRK09687 276 KLKR 279 (280)
T ss_pred HHhc
Confidence 8764
No 22
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.68 E-value=2.5e-14 Score=135.95 Aligned_cols=403 Identities=12% Similarity=0.026 Sum_probs=292.9
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC------CCHHHHHHHHHHHHHHcC
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQ------DYPQLQFKAAWALTNIAS 311 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~------~~~~v~~~a~~~L~~l~~ 311 (670)
+.+..+.+...|++.++..+..++|+|+...+ .+.+..+.+.|+-..++..|+.- .+.+.-..++..|.|...
T Consensus 87 ~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l 165 (604)
T KOG4500|consen 87 EALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL 165 (604)
T ss_pred HHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence 45677777777888999999999999997765 88889999999977777766532 224666778889999999
Q ss_pred CChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhcccCChhHHHHHH
Q 037562 312 GTSENTKVVIDHGAVPIFVKLLAS--PSVDVRKQTVWALGNVAGDS-PRCRDLVLSQGALIPLLAELNENANLSMLRTAT 388 (670)
Q Consensus 312 ~~~~~~~~i~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~ 388 (670)
++.+.+..+++.|+++.|...+.- ++....+......+|+.+-. +...+...+......+++++.....++......
T Consensus 166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f 245 (604)
T KOG4500|consen 166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF 245 (604)
T ss_pred CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence 999999999999999999987754 66667777777666665321 223445556667778888887777888999999
Q ss_pred HHHHhhhcCCCCCChhhhhhhHHHHHHhhcc-CC-------hhHHHHHHHHHHHhccCChHHHHHHHHcC-CHHHHHHhc
Q 037562 389 WTLFNFCRGKPQPPFNQVRPALPVLAQLIRS-ND-------EEVLTDACWALSYLSDGTNDKVQAVIEAG-VYPRLVELL 459 (670)
Q Consensus 389 ~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~-~~-------~~v~~~al~~L~~l~~~~~~~~~~~~~~~-~i~~L~~lL 459 (670)
.++...+.++...-.....|.+..+..+++. .+ -.....++....-+..+++ ..+.+...+ +++.+...+
T Consensus 246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDe-SMq~L~~~p~~l~~~~sw~ 324 (604)
T KOG4500|consen 246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDE-SMQKLHADPQFLDFLESWF 324 (604)
T ss_pred HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCch-HHHHHhcCcHHHHHHHHHh
Confidence 9999999988666666667888888887764 22 2233334444444444444 455566655 899999999
Q ss_pred CCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccC----CchhHHHHHHHHHHHhhcCCHHHHHHHHhcC
Q 037562 460 GHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHN----HEESIKKEVSWIISNITCGNREQIQAVIDSG 535 (670)
Q Consensus 460 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~----~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~ 535 (670)
.+++......+.-+|+|+++.+ ..+..+++.+++..|++.+... .+.+++..++.+++|+.-. ..+...+..+|
T Consensus 325 ~S~d~~l~t~g~LaigNfaR~D-~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP-v~nka~~~~aG 402 (604)
T KOG4500|consen 325 RSDDSNLITMGSLAIGNFARRD-DICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP-VSNKAHFAPAG 402 (604)
T ss_pred cCCchhHHHHHHHHHHhhhccc-hHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc-CCchhhccccc
Confidence 9999999999999999999954 5566689999999999998541 1677888999999999764 33456788999
Q ss_pred ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHH-cCCcHHHHhhccCCChH-HHHHHHHHHHHHHHhhhhhh
Q 037562 536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVR-EGCVKPLCDLLLCADPK-IVTVCLEGLENILKVGVAEM 613 (670)
Q Consensus 536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~-v~~~a~~~l~~l~~~~~~~~ 613 (670)
+.+.+...++...+.+...-...+.-+... -+.....+.+ ...++.|++--+++|.. +.....+.+..+++..-.
T Consensus 403 vteaIL~~lk~~~ppv~fkllgTlrM~~d~-qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~-- 479 (604)
T KOG4500|consen 403 VTEAILLQLKLASPPVTFKLLGTLRMIRDS-QEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKY-- 479 (604)
T ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHHHhc-hHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHh--
Confidence 999999999999999998888888776653 2212333332 23455566655666654 666666777666654211
Q ss_pred ccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHH
Q 037562 614 NTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEI 656 (670)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~ 656 (670)
..+.-.+-+.||++........++-..+..|..+
T Consensus 480 ---------kdv~~tvpksg~ik~~Vsm~t~~hi~mqnEalVa 513 (604)
T KOG4500|consen 480 ---------KDVILTVPKSGGIKEKVSMFTKNHINMQNEALVA 513 (604)
T ss_pred ---------hhhHhhccccccHHHHHHHHHHhhHHHhHHHHHH
Confidence 1134456677888777766666666666655433
No 23
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=9.1e-14 Score=133.84 Aligned_cols=360 Identities=16% Similarity=0.176 Sum_probs=281.1
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT 317 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 317 (670)
..+..+++.+..++.++.......|.+++-. .++...+.+.|++..|++++...+ ++++..+++.+.|++. +...+
T Consensus 304 niV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfNlSF-D~glr 379 (791)
T KOG1222|consen 304 NIVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFNLSF-DSGLR 379 (791)
T ss_pred hHHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhhccc-ccccc
Confidence 3477889999988899999999999999777 678889999999999999999999 8999999999999998 77888
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562 318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG 397 (670)
Q Consensus 318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 397 (670)
..++..|.+|.+..++.+.. -...|+..+..++.++ ..+..+....+++.+.+.+....+..+-......-.|+|.+
T Consensus 380 ~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD-~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln 456 (791)
T KOG1222|consen 380 PKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDD-DAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN 456 (791)
T ss_pred HHHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCc-HHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc
Confidence 99999999999999997643 3345778888888654 45777777788999998887777777766666667788888
Q ss_pred CCCCChhhhhhhHHHHHH-hhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC-CCccchhHHHHHHH
Q 037562 398 KPQPPFNQVRPALPVLAQ-LIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH-SSSSVLTPALRTIR 475 (670)
Q Consensus 398 ~~~~~~~~~~~~i~~L~~-lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~ 475 (670)
..+.+......++..|+. .+++.|+-+ ...++|++.+.......+++ .+..+...++. +++.....++.+++
T Consensus 457 kRNaQlvceGqgL~~LM~ra~k~~D~lL----mK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtla 530 (791)
T KOG1222|consen 457 KRNAQLVCEGQGLDLLMERAIKSRDLLL----MKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLA 530 (791)
T ss_pred cccceEEecCcchHHHHHHHhcccchHH----HHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHh
Confidence 766665555556666554 455555433 46788888876655444554 56667777765 45568889999999
Q ss_pred HhhcCCchhhHHHHhCCChHHHHHhhccCC-chhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh--cCChhHH
Q 037562 476 NIVKGDDFQTQCIINCGALPYFLDMLVHNH-EESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ--NTEFDTK 552 (670)
Q Consensus 476 ~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~--~~~~~v~ 552 (670)
|+...+.+....+.+.+.+|.+-..|+.+- ..++.-..+-+++.++. .......+..+++++.++++++ ..|.++.
T Consensus 531 nL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~-d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV 609 (791)
T KOG1222|consen 531 NLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR-DLDCARLLAPAKLIDTLIELLQACQEDDEFV 609 (791)
T ss_pred hcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh-hhHHHHHhCccccHHHHHHHHHhhcccchHH
Confidence 999877777777778899999999998653 34456666666666654 3555666678899999999998 5678999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHH-HcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhh
Q 037562 553 KEAAWAISNATKFGTHEQIKHLV-REGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEM 613 (670)
Q Consensus 553 ~~a~~aL~~l~~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~ 613 (670)
.+.++++..+..+ ...+..++ +...-..|++++++.+.++|+.+-.+|..+........
T Consensus 610 ~QiiyVF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWA 669 (791)
T KOG1222|consen 610 VQIIYVFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWA 669 (791)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999885 34555555 45666779999999999999999999988877665544
No 24
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.65 E-value=9.9e-15 Score=156.61 Aligned_cols=345 Identities=18% Similarity=0.178 Sum_probs=264.0
Q ss_pred HhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcC---CChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHH
Q 037562 209 YLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWS---DDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPR 285 (670)
Q Consensus 209 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~ 285 (670)
..+++.++.....+-+..+.. |.+|.+++.+.. ++.+.+..|-.+|.|+.... .+....-.+..+++.
T Consensus 214 ~ar~fLemSss~esCaamR~S--------gCLpLLvQilH~~d~~~kear~~A~aALHNIVhSq-PD~kr~RRE~kvL~l 284 (2195)
T KOG2122|consen 214 MARTFLEMSSSPESCAAMRRS--------GCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQ-PDEKRGRREKKVLHL 284 (2195)
T ss_pred HHHHHHHhccCchhhHHHHhc--------cchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcC-cchhhhHHHHHHHHH
Confidence 345566666666666555544 889999999973 35678899999999998764 333222223333333
Q ss_pred HHH----------hhcCC------CCHHHHH-HHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC------------C
Q 037562 286 FVE----------FLMRQ------DYPQLQF-KAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS------------P 336 (670)
Q Consensus 286 L~~----------ll~~~------~~~~v~~-~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~------------~ 336 (670)
|-+ .+... ...+-+. .|+.+|..++. ++++|..+.+.|+++++-+++.- .
T Consensus 285 LeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~ 363 (2195)
T KOG2122|consen 285 LEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGE 363 (2195)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHH
Confidence 321 12111 1123444 67788888887 89999999999999999987742 2
Q ss_pred CHHHHHHHHHHHHHhhCCCchhHHHHHh-cCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhh--hhhHHHH
Q 037562 337 SVDVRKQTVWALGNVAGDSPRCRDLVLS-QGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQV--RPALPVL 413 (670)
Q Consensus 337 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~i~~L 413 (670)
...+|..+..+|.||+.++..++..+.. .|++..++..| .....++....+.+|.||++........+. .|-+-.|
T Consensus 364 ~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL-~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaL 442 (2195)
T KOG2122|consen 364 CNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQL-ISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTAL 442 (2195)
T ss_pred HHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHH-hcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHH
Confidence 3578999999999999887777666554 58899999999 666678999999999999988644333333 4555555
Q ss_pred HH-hhccCChhHHHHHHHHHHHhccCChHHHHHHHH-cCCHHHHHHhcCCCC----ccchhHHHHHHHHhhc---CCchh
Q 037562 414 AQ-LIRSNDEEVLTDACWALSYLSDGTNDKVQAVIE-AGVYPRLVELLGHSS----SSVLTPALRTIRNIVK---GDDFQ 484 (670)
Q Consensus 414 ~~-lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~~~----~~v~~~a~~~L~~l~~---~~~~~ 484 (670)
+. .++...+.....++.+|+||+.+..++...+.. .|.+..|+.+|.... -.+.+.|-.+|.|.+. ....+
T Consensus 443 a~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~y 522 (2195)
T KOG2122|consen 443 AACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDY 522 (2195)
T ss_pred HHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchH
Confidence 54 455667788899999999999887777666665 489999999998752 3477788888877754 45667
Q ss_pred hHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcC
Q 037562 485 TQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATK 564 (670)
Q Consensus 485 ~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 564 (670)
.+.+.+.+.+..|++.|++. +-.+...+|++|.||...++...+.+.+.|.++.|..++.+.+..+..-++.+|.|+..
T Consensus 523 RQILR~~NCLq~LLQ~LKS~-SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 523 RQILRRHNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLN 601 (2195)
T ss_pred HHHHHHhhHHHHHHHHhhhc-ceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence 78788999999999999999 99999999999999999999999999999999999999999999999999999999977
Q ss_pred C
Q 037562 565 F 565 (670)
Q Consensus 565 ~ 565 (670)
+
T Consensus 602 ~ 602 (2195)
T KOG2122|consen 602 F 602 (2195)
T ss_pred C
Confidence 5
No 25
>PRK09687 putative lyase; Provisional
Probab=99.64 E-value=5.5e-14 Score=135.18 Aligned_cols=254 Identities=13% Similarity=0.091 Sum_probs=200.2
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562 239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK 318 (670)
Q Consensus 239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 318 (670)
.++.|+..+.+++..++..|++.|..+... .+++.+..++.+++ +.+|..|+++|+.+..... .
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~------------~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~~-~-- 87 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRGGQ------------DVFRLAIELCSSKN-PIERDIGADILSQLGMAKR-C-- 87 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcCcc------------hHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCcc-c--
Confidence 378899999999999999999999877322 25777888888888 8999999999999975221 1
Q ss_pred HHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562 319 VVIDHGAVPIFVKL-LASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG 397 (670)
Q Consensus 319 ~i~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 397 (670)
....++.|..+ ++++++.||..|+.+|++++...+.... .++..+...+ .+.+..|+..++++|..+..
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~-----~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~- 157 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSP-----KIVEQSQITA-FDKSTNVRFAVAFALSVIND- 157 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccch-----HHHHHHHHHh-hCCCHHHHHHHHHHHhccCC-
Confidence 12356777776 6789999999999999999744321111 1244555556 66688999999999976653
Q ss_pred CCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHh
Q 037562 398 KPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477 (670)
Q Consensus 398 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 477 (670)
...++.|+.++.++++.|+..|+.+|+.+....+ .+++.|+..+.+.++.||..|+++|+.+
T Consensus 158 ---------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 ---------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred ---------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 4588999999999999999999999999843333 3457788999999999999999999886
Q ss_pred hcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh-cCChhHHHHHH
Q 037562 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ-NTEFDTKKEAA 556 (670)
Q Consensus 478 ~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~ 556 (670)
-. ..+++.|+..++++ + ++..|+.+++++.. + ..+|.|..++. .+|.+++..|.
T Consensus 220 ~~-----------~~av~~Li~~L~~~-~--~~~~a~~ALg~ig~--~---------~a~p~L~~l~~~~~d~~v~~~a~ 274 (280)
T PRK09687 220 KD-----------KRVLSVLIKELKKG-T--VGDLIIEAAGELGD--K---------TLLPVLDTLLYKFDDNEIITKAI 274 (280)
T ss_pred CC-----------hhHHHHHHHHHcCC-c--hHHHHHHHHHhcCC--H---------hHHHHHHHHHhhCCChhHHHHHH
Confidence 42 24789999999887 4 77889999999843 2 36888999997 78999999999
Q ss_pred HHHHH
Q 037562 557 WAISN 561 (670)
Q Consensus 557 ~aL~~ 561 (670)
+++..
T Consensus 275 ~a~~~ 279 (280)
T PRK09687 275 DKLKR 279 (280)
T ss_pred HHHhc
Confidence 98864
No 26
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1.9e-12 Score=138.65 Aligned_cols=363 Identities=17% Similarity=0.158 Sum_probs=248.1
Q ss_pred hhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh-
Q 037562 236 KLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTS- 314 (670)
Q Consensus 236 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~- 314 (670)
.++.++.+++..+|++++.|..|+..|..+...-....... -..+.+.+.+.+.+++ ..||..|+++++.++...+
T Consensus 116 WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~--~~~l~~lf~q~~~d~s-~~vr~~a~rA~~a~~~~~~~ 192 (1075)
T KOG2171|consen 116 WPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPH--LDDLLRLFSQTMTDPS-SPVRVAAVRALGAFAEYLEN 192 (1075)
T ss_pred hHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchh--HHHHHHHHHHhccCCc-chHHHHHHHHHHHHHHHhcc
Confidence 55667788888889999999999999998866532221111 1124666677777877 4599999999999887442
Q ss_pred --hhHHHHHhCCChHHHHHhh----CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc-ccCChhHHHHH
Q 037562 315 --ENTKVVIDHGAVPIFVKLL----ASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELN-ENANLSMLRTA 387 (670)
Q Consensus 315 --~~~~~i~~~~~i~~L~~lL----~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~-~~~~~~~~~~a 387 (670)
..++.+. ..+|.++..+ ...+.+....+..+|..++...|..-...+. .++.-.+.... +.-+..+|..|
T Consensus 193 ~~~~~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~A 269 (1075)
T KOG2171|consen 193 NKSEVDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELENSIRHLA 269 (1075)
T ss_pred chHHHHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccHHHHHHH
Confidence 3333333 3556565554 4466777778888888888665543222111 01222222221 22345566666
Q ss_pred HHHHHhhhcCCCCC----------------------------------------------------------Chhhhhhh
Q 037562 388 TWTLFNFCRGKPQP----------------------------------------------------------PFNQVRPA 409 (670)
Q Consensus 388 ~~~L~~l~~~~~~~----------------------------------------------------------~~~~~~~~ 409 (670)
+.++..+++..|.. ...+....
T Consensus 270 Le~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~ 349 (1075)
T KOG2171|consen 270 LEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPL 349 (1075)
T ss_pred HHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHH
Confidence 66666555442110 00111345
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHH
Q 037562 410 LPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCII 489 (670)
Q Consensus 410 i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~ 489 (670)
++.+-.++++.+..-|.+++.+|+.++++..+.....++ .+++.++..|.++++.||..|+.+++.++.+-....+.-.
T Consensus 350 ~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~ 428 (1075)
T KOG2171|consen 350 FEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKH 428 (1075)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHH
Confidence 566667788889999999999999999998877776555 7889999999999999999999999999987766666667
Q ss_pred hCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHH-HHHHHHhcCChH-HHHHHhhcCChhHHHHHHHHHHHhcCCCC
Q 037562 490 NCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNRE-QIQAVIDSGLIG-PIVNLLQNTEFDTKKEAAWAISNATKFGT 567 (670)
Q Consensus 490 ~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~~~i~-~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 567 (670)
...+.+.|+..+.+..++.|+.+|+.++-|+....+. .+.... .+++. .+..++.++.+.+++.++.+|+..+....
T Consensus 429 ~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~ 507 (1075)
T KOG2171|consen 429 HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYL-DGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ 507 (1075)
T ss_pred HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHH-HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence 7788899999999987889999999999999874333 222222 24555 44445567889999999999999998765
Q ss_pred HHHHHHHHHcCCcHHHHhhccCCC----hHHHHHHHHHHHHHHHh
Q 037562 568 HEQIKHLVREGCVKPLCDLLLCAD----PKIVTVCLEGLENILKV 608 (670)
Q Consensus 568 ~~~~~~l~~~~~i~~L~~ll~~~~----~~v~~~a~~~l~~l~~~ 608 (670)
..+.+++-. .++.|...+.+.+ ..+|.+.+.+++-+-..
T Consensus 508 ~~F~pY~d~--~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~A 550 (1075)
T KOG2171|consen 508 EKFIPYFDR--LMPLLKNFLQNADDKDLRELRGKTMECLSLIARA 550 (1075)
T ss_pred hhhHhHHHH--HHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHH
Confidence 566665433 6777777776544 34666666666655443
No 27
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.59 E-value=6.4e-13 Score=150.02 Aligned_cols=275 Identities=15% Similarity=0.147 Sum_probs=220.8
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT 317 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 317 (670)
..++.|++.|.++++.++..|+..|..+.. .+.++.|+..|++++ +.||..|+.+|..+....
T Consensus 621 ~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~---- 683 (897)
T PRK13800 621 PSVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGA-AAVRRAAAEGLRELVEVL---- 683 (897)
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcc----
Confidence 457889999999999999999999987732 226888999998888 899999999999885411
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562 318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG 397 (670)
Q Consensus 318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 397 (670)
...+.+...|.++++.+|..|+.+|..+.... ...++..+ .+.++.++..|+.+|..+-.
T Consensus 684 ------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L-~D~d~~VR~~Av~aL~~~~~- 743 (897)
T PRK13800 684 ------PPAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAAL-GDPDHRVRIEAVRALVSVDD- 743 (897)
T ss_pred ------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHh-cCCCHHHHHHHHHHHhcccC-
Confidence 12357888899999999999999999874222 23466667 78899999999999997622
Q ss_pred CCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHh
Q 037562 398 KPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477 (670)
Q Consensus 398 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 477 (670)
.+.+..++.++++.||..++.+|+.+..... ..++.|..+++++++.+|..|+.+|+.+
T Consensus 744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg~~ 802 (897)
T PRK13800 744 ------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALAEL 802 (897)
T ss_pred ------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 1346788999999999999999998864322 2367788999999999999999999988
Q ss_pred hcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHH
Q 037562 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAW 557 (670)
Q Consensus 478 ~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 557 (670)
.... ...+.+...+.++ ++.||..|+++|+.+.. ...++.|+.++.+++..||..|+.
T Consensus 803 g~~~----------~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~VR~~A~~ 860 (897)
T PRK13800 803 GCPP----------DDVAAATAALRAS-AWQVRQGAARALAGAAA-----------DVAVPALVEALTDPHLDVRKAAVL 860 (897)
T ss_pred CCcc----------hhHHHHHHHhcCC-ChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCCCHHHHHHHHH
Confidence 5421 1235678889888 99999999999998742 125688999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHH
Q 037562 558 AISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLE 603 (670)
Q Consensus 558 aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~ 603 (670)
+|+.+.. ++. ..+.|...+++.+++|+..|..+|.
T Consensus 861 aL~~~~~--~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 861 ALTRWPG--DPA---------ARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHhccCC--CHH---------HHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 9999732 333 4677888999999999999999885
No 28
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.56 E-value=5.1e-12 Score=127.21 Aligned_cols=406 Identities=14% Similarity=0.077 Sum_probs=276.9
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHcCCChhhHHHH
Q 037562 242 AMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQD-YPQLQFKAAWALTNIASGTSENTKVV 320 (670)
Q Consensus 242 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i 320 (670)
.++..+.+.+++....|..-..+.+.+. .+....+++.|.++.++.+++..+ ..+.+...+-++...+.+.......+
T Consensus 13 ~~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~sv 91 (678)
T KOG1293|consen 13 DLLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSV 91 (678)
T ss_pred HHHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHH
Confidence 3455556778888889999999998876 566667999999999999987654 25777778888888888888899999
Q ss_pred HhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHHHHH--hcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562 321 IDHGAVPIFVKLLASPS-VDVRKQTVWALGNVAGDSPRCRDLVL--SQGALIPLLAELNENANLSMLRTATWTLFNFCRG 397 (670)
Q Consensus 321 ~~~~~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~--~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 397 (670)
.+.+.++.+.+++.+++ ..+++.+++++.++...++..-.... ....+..+..+. ......+.+.-+...++++..
T Consensus 92 L~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~ 170 (678)
T KOG1293|consen 92 LRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSST 170 (678)
T ss_pred HHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhcccccc
Confidence 99999999999999988 89999999999999866543211111 112233333333 323334445555566666666
Q ss_pred CCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHH---HhccCChHHHHH----HHHcCCHH--HHHHhcCCCCccchh
Q 037562 398 KPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALS---YLSDGTNDKVQA----VIEAGVYP--RLVELLGHSSSSVLT 468 (670)
Q Consensus 398 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~---~l~~~~~~~~~~----~~~~~~i~--~L~~lL~~~~~~v~~ 468 (670)
..........++.+.+.-++.......|..++.+++ ++..+++..... ..+.|+.+ .+.+++++++.+.+.
T Consensus 171 ~~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l 250 (678)
T KOG1293|consen 171 KDHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERL 250 (678)
T ss_pred chhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHH
Confidence 544444444777788887887778899999999999 777666644433 33446655 456667777777777
Q ss_pred HHHHHHHHhhcCCchhh-------------HHHH--------------------------------------hCCChHHH
Q 037562 469 PALRTIRNIVKGDDFQT-------------QCII--------------------------------------NCGALPYF 497 (670)
Q Consensus 469 ~a~~~L~~l~~~~~~~~-------------~~l~--------------------------------------~~~~~~~L 497 (670)
.++.++-++...+.... ..+. +....+..
T Consensus 251 ~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~ 330 (678)
T KOG1293|consen 251 RSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTT 330 (678)
T ss_pred HHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhH
Confidence 77777777765430000 0000 00001111
Q ss_pred HHhhc----------------------------------------------------cCCchhHHHHHHHHHHHhhcCCH
Q 037562 498 LDMLV----------------------------------------------------HNHEESIKKEVSWIISNITCGNR 525 (670)
Q Consensus 498 ~~~l~----------------------------------------------------~~~~~~v~~~a~~~L~~l~~~~~ 525 (670)
.+++. .. +..++..|+-++.++++.-.
T Consensus 331 ~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~aaa~l~~~s~srsV~ 409 (678)
T KOG1293|consen 331 TELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK-DHDFVAAALLCLKSFSRSVS 409 (678)
T ss_pred HHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc-cHHHHHHHHHHHHHHHHHHH
Confidence 11110 01 33334444444444443222
Q ss_pred HHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHH
Q 037562 526 EQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENI 605 (670)
Q Consensus 526 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l 605 (670)
.....+-..+++..|++++..++..++..+.++|+|+....+ .....|+..|+|+.+..++.+.++.++..++|+|.++
T Consensus 410 aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l 488 (678)
T KOG1293|consen 410 ALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHL 488 (678)
T ss_pred HHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 222223346789999999999999999999999999988644 4567789999999999999999999999999999998
Q ss_pred HHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 037562 606 LKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYWSS 663 (670)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~~~ 663 (670)
+-......+ .+.. .-=+...|..+.++++..|++.+..++.++-.+
T Consensus 489 ~f~~de~~k-----------~~~~-~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 489 MFNCDEEEK-----------FQLL-AKIPANLILDLINDPDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HhcchHHHH-----------HHHH-HHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence 766554332 1111 111245578889999999999999999988755
No 29
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.56 E-value=1.4e-12 Score=147.20 Aligned_cols=277 Identities=16% Similarity=0.165 Sum_probs=219.8
Q ss_pred cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q 037562 280 SGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCR 359 (670)
Q Consensus 280 ~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 359 (670)
...++.|++.|.+++ +.||..|+..|+.+.. .+.++.|+..|.++++.+|..|+.+|..+....+
T Consensus 620 ~~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~--- 684 (897)
T PRK13800 620 APSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP--- 684 (897)
T ss_pred chhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC---
Confidence 346789999999999 9999999999999854 3468899999999999999999999998853222
Q ss_pred HHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 037562 360 DLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGT 439 (670)
Q Consensus 360 ~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~ 439 (670)
..+.+...+ ++.++.++..++.+|..+.... ...++..|.++|+.++..++.+|+.+..
T Consensus 685 -------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-- 743 (897)
T PRK13800 685 -------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD-- 743 (897)
T ss_pred -------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC--
Confidence 134566777 6688999999999998875321 2457788999999999999999987631
Q ss_pred hHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHH
Q 037562 440 NDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISN 519 (670)
Q Consensus 440 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~ 519 (670)
.+.+...+.++++.||..++.+|+.+..... ..++.|..+++++ ++.||..|+.+|+.
T Consensus 744 ------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg~ 801 (897)
T PRK13800 744 ------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALAE 801 (897)
T ss_pred ------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHHh
Confidence 1346678999999999999999998865321 2367888999999 99999999999999
Q ss_pred hhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHH
Q 037562 520 ITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCL 599 (670)
Q Consensus 520 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 599 (670)
+... + ..++.++..+.++++.||..|+.+|+.+... ..++.|..++++++..||..++
T Consensus 802 ~g~~-~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~------------~a~~~L~~~L~D~~~~VR~~A~ 859 (897)
T PRK13800 802 LGCP-P---------DDVAAATAALRASAWQVRQGAARALAGAAAD------------VAVPALVEALTDPHLDVRKAAV 859 (897)
T ss_pred cCCc-c---------hhHHHHHHHhcCCChHHHHHHHHHHHhcccc------------chHHHHHHHhcCCCHHHHHHHH
Confidence 8432 1 1235578888999999999999999987542 2568999999999999999999
Q ss_pred HHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 037562 600 EGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILET 659 (670)
Q Consensus 600 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~ 659 (670)
.+|..+ ...+ ...+.|...+++++++|+..|.+.|+.
T Consensus 860 ~aL~~~-~~~~----------------------~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 860 LALTRW-PGDP----------------------AARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred HHHhcc-CCCH----------------------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 999885 1000 114566777889999999999998863
No 30
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=1.2e-11 Score=132.55 Aligned_cols=424 Identities=17% Similarity=0.205 Sum_probs=281.8
Q ss_pred hhhhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCCCCcHHHHHHc
Q 037562 202 NTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSD-DNSLQLEATTLFINLLSFDRSPPIDEVIQS 280 (670)
Q Consensus 202 ~~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 280 (670)
+.++|+++.=.+|.++..-=+.+.... +. ..-..++..+.++ .+.++..-+.++..++...-.+.+ .
T Consensus 50 ~p~~Rq~aaVl~Rkl~~~~w~~l~~e~-----~~--siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e~W-----P 117 (1075)
T KOG2171|consen 50 DPQVRQLAAVLLRKLLTKHWSRLSAEV-----QQ--SIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPEKW-----P 117 (1075)
T ss_pred ChHHHHHHHHHHHHHHHHHhhcCCHHH-----HH--HHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccch-----H
Confidence 446777776666666666222222111 11 2245677777654 467888888899888876422212 2
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC---ch
Q 037562 281 GVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDS---PR 357 (670)
Q Consensus 281 g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~---~~ 357 (670)
++++.|++..++++ +..|+.|..+|..+...-...-...+ ..+.+.+.+-+.+++..+|..++++++.++... +.
T Consensus 118 ell~~L~q~~~S~~-~~~rE~al~il~s~~~~~~~~~~~~~-~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~ 195 (1075)
T KOG2171|consen 118 ELLQFLFQSTKSPN-PSLRESALLILSSLPETFGNTLQPHL-DDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKS 195 (1075)
T ss_pred HHHHHHHHHhcCCC-cchhHHHHHHHHhhhhhhccccchhH-HHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchH
Confidence 35677777778888 89999999999999873222211111 123455566667777669999999999988544 23
Q ss_pred hHHHHHhcCChHHHHHHhc---ccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccC--ChhHHHHHHHHH
Q 037562 358 CRDLVLSQGALIPLLAELN---ENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSN--DEEVLTDACWAL 432 (670)
Q Consensus 358 ~~~~i~~~~~i~~Ll~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~al~~L 432 (670)
....+.. .+|.++..+. +..+.+....+..+|..+....|.--......++........+. ++.+|..|+.++
T Consensus 196 ~~~~~~~--llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~i 273 (1075)
T KOG2171|consen 196 EVDKFRD--LLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFL 273 (1075)
T ss_pred HHHHHHH--HhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 3333332 4666776663 34555666788888888888765554445556666666666554 577888888777
Q ss_pred HHhccCChHHHHH---------------------------------------------HHH---c---------CCHHHH
Q 037562 433 SYLSDGTNDKVQA---------------------------------------------VIE---A---------GVYPRL 455 (670)
Q Consensus 433 ~~l~~~~~~~~~~---------------------------------------------~~~---~---------~~i~~L 455 (670)
..++...+...+. .++ . -+++.+
T Consensus 274 vs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l 353 (1075)
T KOG2171|consen 274 VSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEAL 353 (1075)
T ss_pred HHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHH
Confidence 7666552211110 000 0 145566
Q ss_pred HHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcC
Q 037562 456 VELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSG 535 (670)
Q Consensus 456 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~ 535 (670)
-.++++.++..|..|+.+|+.++.+..+.....+ ..+++.++..++++ ++.||..|+.+++.++..-...++.-....
T Consensus 354 ~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~iqk~~~e~ 431 (1075)
T KOG2171|consen 354 EAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEIQKKHHER 431 (1075)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHHHHHHHHh
Confidence 6777889999999999999999998877665433 35888899999999 999999999999999886555566556667
Q ss_pred ChHHHHHHhhc-CChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcH-HHHhhccCCChHHHHHHHHHHHHHHHhhhhhh
Q 037562 536 LIGPIVNLLQN-TEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVK-PLCDLLLCADPKIVTVCLEGLENILKVGVAEM 613 (670)
Q Consensus 536 ~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~-~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~ 613 (670)
+++.|+..+++ .+++|+..|+.++.|++..+.++....-.+ +.++ .+..++.++.+.++..+..+|..+....+..
T Consensus 432 l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~- 509 (1075)
T KOG2171|consen 432 LPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK- 509 (1075)
T ss_pred ccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh-
Confidence 88899998885 467999999999999998766555443222 2444 4445668888999999999999988766542
Q ss_pred ccCCCCCCccHHHHHHHHhchHHHHHHh-hcCCCHHHHHHHHHHHH
Q 037562 614 NTGTAVGDFNQYAQLVEEAEGLEKIENL-QSHDDNGISEKAVEILE 658 (670)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~g~~~~l~~L-~~~~~~~v~~~a~~~l~ 658 (670)
+.+|.+.+ ++.|.+. ++..+++.+...-+.++
T Consensus 510 --------F~pY~d~~-----Mp~L~~~L~n~~~~d~r~LrgktmE 542 (1075)
T KOG2171|consen 510 --------FIPYFDRL-----MPLLKNFLQNADDKDLRELRGKTME 542 (1075)
T ss_pred --------hHhHHHHH-----HHHHHHHHhCCCchhhHHHHhhHHH
Confidence 33344443 4666554 44554666655544443
No 31
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.52 E-value=2.1e-12 Score=121.09 Aligned_cols=239 Identities=18% Similarity=0.174 Sum_probs=183.8
Q ss_pred hhhhHHHHHHhhcc-CChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchh
Q 037562 406 VRPALPVLAQLIRS-NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQ 484 (670)
Q Consensus 406 ~~~~i~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 484 (670)
..+-++.++.+|+. .|+.+++.++.++++.+.. +.....+.+.|+++.+..++.++++.++..|++++.|++...+..
T Consensus 10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 10 EAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence 35677899999995 5899999999999998765 445666888999999999999999999999999999998855433
Q ss_pred hHHHHhCCChHHHHHhhccC-CchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhc
Q 037562 485 TQCIINCGALPYFLDMLVHN-HEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNAT 563 (670)
Q Consensus 485 ~~~l~~~~~~~~L~~~l~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 563 (670)
..+ +. .++.+.+.+.+. .+..++..+..+|.|++..+ +.. .++ .+.++.++.++.+++..+|..+..+|.|++
T Consensus 89 -~~I-k~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~~~-~~l-~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 89 -EQI-KM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-DYH-HML-ANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred -HHH-HH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-chh-hhH-HhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 323 22 455555554433 37889999999999997643 222 333 347999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHcCCcHHHHhhccCC-ChHHHHHHHHHHHHHHHhhhhhhccCC-CCCCccHHHHHHHHhc-hHHHHHH
Q 037562 564 KFGTHEQIKHLVREGCVKPLCDLLLCA-DPKIVTVCLEGLENILKVGVAEMNTGT-AVGDFNQYAQLVEEAE-GLEKIEN 640 (670)
Q Consensus 564 ~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~g-~~~~l~~ 640 (670)
. ++...+.++..++...++.+++.. +.++...++..+.++-..-.+...... .-.........|.+.+ ..+.|..
T Consensus 163 ~--np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~ 240 (254)
T PF04826_consen 163 E--NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQA 240 (254)
T ss_pred c--CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHH
Confidence 9 688899999999999999999765 678888999999998654333321110 0012233346666666 5667889
Q ss_pred hhcCCCHHHHHHH
Q 037562 641 LQSHDDNGISEKA 653 (670)
Q Consensus 641 L~~~~~~~v~~~a 653 (670)
|..|++++|+.++
T Consensus 241 l~~h~d~ev~~~v 253 (254)
T PF04826_consen 241 LANHPDPEVKEQV 253 (254)
T ss_pred HHcCCCHHHhhhc
Confidence 9999999999764
No 32
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.49 E-value=4.5e-12 Score=118.88 Aligned_cols=196 Identities=21% Similarity=0.252 Sum_probs=163.0
Q ss_pred HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q 037562 278 IQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPR 357 (670)
Q Consensus 278 ~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 357 (670)
.+.+-+..|+.+|+..++|.+++.|..++++.+. .+.+++.+.+.|+++.+..++.++++.++..|+++|.|++...+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e- 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE- 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh-
Confidence 5566789999999976559999999999999987 88999999999999999999999999999999999999986654
Q ss_pred hHHHHHhcCChHHHHHHhccc-CChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhc
Q 037562 358 CRDLVLSQGALIPLLAELNEN-ANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLS 436 (670)
Q Consensus 358 ~~~~i~~~~~i~~Ll~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~ 436 (670)
.+..+.. .++.+++.+... -+..++..++.+|.|++..+... ......+|.++.++.+++..++..++++|.|++
T Consensus 87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~--~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS 162 (254)
T PF04826_consen 87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYH--HMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS 162 (254)
T ss_pred hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchh--hhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence 3444433 466666655343 47789999999999998764332 223568999999999999999999999999999
Q ss_pred cCChHHHHHHHHcCCHHHHHHhcCCC-CccchhHHHHHHHHhhcC
Q 037562 437 DGTNDKVQAVIEAGVYPRLVELLGHS-SSSVLTPALRTIRNIVKG 480 (670)
Q Consensus 437 ~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~ 480 (670)
.++. ....++..++...++.+++.+ +.++...++..+.|+..+
T Consensus 163 ~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 163 ENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred cCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 8644 566688889999999999885 567889999999999654
No 33
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.43 E-value=1.3e-11 Score=133.77 Aligned_cols=359 Identities=17% Similarity=0.210 Sum_probs=253.4
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562 239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK 318 (670)
Q Consensus 239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 318 (670)
.+..+.+-+.++++.++..|++++.++.. ..+.+. +++.+.+++.+++ +.||..|+.++..+...+++...
T Consensus 80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~-------~~~~~~-l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~~~p~~~~ 150 (526)
T PF01602_consen 80 IINSLQKDLNSPNPYIRGLALRTLSNIRT-------PEMAEP-LIPDVIKLLSDPS-PYVRKKAALALLKIYRKDPDLVE 150 (526)
T ss_dssp HHHHHHHHHCSSSHHHHHHHHHHHHHH-S-------HHHHHH-HHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCHCCHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHhhhhhhcc-------cchhhH-HHHHHHHHhcCCc-hHHHHHHHHHHHHHhccCHHHHH
Confidence 46778888889999999999999999852 223322 5788899999999 89999999999999875555432
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc---ccCChhHHHHHHHHHHhhh
Q 037562 319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELN---ENANLSMLRTATWTLFNFC 395 (670)
Q Consensus 319 ~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~---~~~~~~~~~~a~~~L~~l~ 395 (670)
.. .++.+.+++.++++.++..|+.++..+ ..++.... ..++.++..+. ...++..+..++.++..++
T Consensus 151 ---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-----~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~ 220 (526)
T PF01602_consen 151 ---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-----SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA 220 (526)
T ss_dssp ---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-----THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred ---HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-----hhHHHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence 22 588999999999999999999999999 22221100 23444444443 6778888889999999887
Q ss_pred cCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHH
Q 037562 396 RGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIR 475 (670)
Q Consensus 396 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~ 475 (670)
...+..... ...++.+..++++.++.|...++.++..+..... .-..+++.+..++.++++.++..++..|.
T Consensus 221 ~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~L~ 292 (526)
T PF01602_consen 221 PMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDSLS 292 (526)
T ss_dssp SSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred cCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHHHH
Confidence 654211100 5688888899998899999999999998876433 22257788999999989899999999999
Q ss_pred HhhcCCchhhHHHHhCCChHHHHHhhc-cCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh-cCChhHHH
Q 037562 476 NIVKGDDFQTQCIINCGALPYFLDMLV-HNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ-NTEFDTKK 553 (670)
Q Consensus 476 ~l~~~~~~~~~~l~~~~~~~~L~~~l~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~ 553 (670)
.++...+. .+. .....+..+. ++ +..+|..+..++..++. +.+... +++.|...+. ..+.+++.
T Consensus 293 ~l~~~~~~----~v~--~~~~~~~~l~~~~-d~~Ir~~~l~lL~~l~~--~~n~~~-----Il~eL~~~l~~~~d~~~~~ 358 (526)
T PF01602_consen 293 QLAQSNPP----AVF--NQSLILFFLLYDD-DPSIRKKALDLLYKLAN--ESNVKE-----ILDELLKYLSELSDPDFRR 358 (526)
T ss_dssp HHCCHCHH----HHG--THHHHHHHHHCSS-SHHHHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHHC--HHHHH
T ss_pred Hhhcccch----hhh--hhhhhhheecCCC-ChhHHHHHHHHHhhccc--ccchhh-----HHHHHHHHHHhccchhhhh
Confidence 99875522 222 2333444555 55 89999999999999975 344333 5667788884 55888999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhc
Q 037562 554 EAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAE 633 (670)
Q Consensus 554 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g 633 (670)
.++.+++.++.... ..... .++.+++++...+..+...+...+.+++...+... ...
T Consensus 359 ~~i~~I~~la~~~~-~~~~~-----~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~------------~~~----- 415 (526)
T PF01602_consen 359 ELIKAIGDLAEKFP-PDAEW-----YVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELR------------EKI----- 415 (526)
T ss_dssp HHHHHHHHHHHHHG-SSHHH-----HHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH------------HHH-----
T ss_pred hHHHHHHHHHhccC-chHHH-----HHHHHHHhhhhccccccchHHHHHHHHhhcChhhh------------HHH-----
Confidence 99999999887421 11112 46778888887777777777777777776543221 111
Q ss_pred hHHHHH-HhhcCCCHHHHHHHHHHHHHhcC
Q 037562 634 GLEKIE-NLQSHDDNGISEKAVEILETYWS 662 (670)
Q Consensus 634 ~~~~l~-~L~~~~~~~v~~~a~~~l~~~~~ 662 (670)
+..+. .+..-.++++...+.|++.+|-+
T Consensus 416 -l~~L~~~l~~~~~~~~~~~~~wilGEy~~ 444 (526)
T PF01602_consen 416 -LKKLIELLEDISSPEALAAAIWILGEYGE 444 (526)
T ss_dssp -HHHHHHHHTSSSSHHHHHHHHHHHHHHCH
T ss_pred -HHHHHHHHHHhhHHHHHHHHHhhhcccCC
Confidence 33333 33446777888888888888753
No 34
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=1.2e-11 Score=124.16 Aligned_cols=349 Identities=14% Similarity=0.162 Sum_probs=234.5
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 037562 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVID 322 (670)
Q Consensus 243 l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 322 (670)
.+..+.+.++-++.-.-..+..+++...-... ..++|.|.++|.+++ ...++-|..+|..++.++.+.-+.-..
T Consensus 95 ~l~~lgd~~~lIr~tvGivITTI~s~~~~~~w-----pelLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~ 168 (885)
T KOG2023|consen 95 CLHGLGDASPLIRATVGIVITTIASTGGLQHW-----PELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVL 168 (885)
T ss_pred HHhhccCchHHHHhhhhheeeeeecccccccc-----hhHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcc
Confidence 34444444444443333334444443322222 236899999999999 689999999999999966554443211
Q ss_pred C----CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhc-CChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562 323 H----GAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQ-GALIPLLAELNENANLSMLRTATWTLFNFCRG 397 (670)
Q Consensus 323 ~----~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 397 (670)
. -.+|.++++.+++++.+|..|+.++..+....+. ...... ..++.+..+- .+.+++||++.|.++..|...
T Consensus 169 ~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q--al~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Llev 245 (885)
T KOG2023|consen 169 TRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ--ALYVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLEV 245 (885)
T ss_pred cCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH--HHHHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHh
Confidence 1 3678999999999999999999999988754432 122221 2345555555 888999999999999999998
Q ss_pred CCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCh--HHHHHHHHcCCHHHHHHhcCCC-------------
Q 037562 398 KPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTN--DKVQAVIEAGVYPRLVELLGHS------------- 462 (670)
Q Consensus 398 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~--~~~~~~~~~~~i~~L~~lL~~~------------- 462 (670)
.+.+-.....++++.+++..++.|++|...|+.....+++.+- +.....++ .+++.|+.-+...
T Consensus 246 r~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~-kliPvLl~~M~Ysd~D~~LL~~~eeD 324 (885)
T KOG2023|consen 246 RPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLD-KLIPVLLSGMVYSDDDIILLKNNEED 324 (885)
T ss_pred cHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHH-HHHHHHHccCccccccHHHhcCcccc
Confidence 8777777778999999999999999999999999998887642 11111221 4555555443311
Q ss_pred -------------------------------------------CccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHH
Q 037562 463 -------------------------------------------SSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLD 499 (670)
Q Consensus 463 -------------------------------------------~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~ 499 (670)
++.+|+.++.+|..++.-..+. +.. -++|.|-+
T Consensus 325 ~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~e---lL~-~l~PlLk~ 400 (885)
T KOG2023|consen 325 ESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDE---LLP-ILLPLLKE 400 (885)
T ss_pred ccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHH---HHH-HHHHHHHH
Confidence 1345665555555555422111 111 24566666
Q ss_pred hhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHH-HHHHHHHcC
Q 037562 500 MLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHE-QIKHLVREG 578 (670)
Q Consensus 500 ~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~-~~~~l~~~~ 578 (670)
.|.+. +..+|+.+..+++.++.+.-+....-+ ..++|.|+.+|.+..+-||..+||+|+..+.....+ ..+++..
T Consensus 401 ~L~~~-~W~vrEagvLAlGAIAEGcM~g~~p~L-peLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~p-- 476 (885)
T KOG2023|consen 401 HLSSE-EWKVREAGVLALGAIAEGCMQGFVPHL-PELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKP-- 476 (885)
T ss_pred HcCcc-hhhhhhhhHHHHHHHHHHHhhhcccch-HHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHH--
Confidence 67777 899999999999999886433221111 136889999999999999999999999887642111 1223222
Q ss_pred CcHHHHhhccCCChHHHHHHHHHHHHHHHhh
Q 037562 579 CVKPLCDLLLCADPKIVTVCLEGLENILKVG 609 (670)
Q Consensus 579 ~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~ 609 (670)
++..|.+.+-+.+..|+++|+.++..+-+..
T Consensus 477 vL~~ll~~llD~NK~VQEAAcsAfAtleE~A 507 (885)
T KOG2023|consen 477 VLEGLLRRLLDSNKKVQEAACSAFATLEEEA 507 (885)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhc
Confidence 4555566666788999999999998865543
No 35
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=99.42 E-value=5.7e-11 Score=119.77 Aligned_cols=370 Identities=13% Similarity=0.103 Sum_probs=246.0
Q ss_pred hccHHHHHHHhcCCCh--HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh
Q 037562 237 LEILPAMVDGVWSDDN--SLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTS 314 (670)
Q Consensus 237 ~~~i~~l~~~l~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~ 314 (670)
.|+++.+...+..++. +.+.+.+..+.....++ .+....+.+.+.++.+++++.+++...+++...+++..+...++
T Consensus 50 ~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~e-qd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~ 128 (678)
T KOG1293|consen 50 LGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGE-QDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSK 128 (678)
T ss_pred hcchHHHHhhccccCCchhhhhhHHHHHHhHHhhc-cchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhccc
Confidence 4789999998886554 45545555555555555 77789999999999999999888756899999999999987432
Q ss_pred hh--HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHH
Q 037562 315 EN--TKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLF 392 (670)
Q Consensus 315 ~~--~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~ 392 (670)
.. ........+++.+..++..+.......-+....+++.. +..+....+.|+.+.+--++ ...+..++..|..+++
T Consensus 129 ~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~-~~hq~Il~Na~i~ekI~~l~-~~~s~~~RlaaL~~~s 206 (678)
T KOG1293|consen 129 YQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSST-KDHQLILCNAGILEKINILL-MYLSSKLRLAALLCLS 206 (678)
T ss_pred ccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccc-chhhheeccccchhhHHHHH-HhhhHHHHHHHHHHhh
Confidence 21 12222334555555555434444444444555555544 35566666666555444443 5556778888888888
Q ss_pred ---hhhcCCCCCChhhh-----hhhHH--HHHHhhccCChhHHHHHHHHHHHhccCChHH--------------------
Q 037562 393 ---NFCRGKPQPPFNQV-----RPALP--VLAQLIRSNDEEVLTDACWALSYLSDGTNDK-------------------- 442 (670)
Q Consensus 393 ---~l~~~~~~~~~~~~-----~~~i~--~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~-------------------- 442 (670)
++..+++....... .++.+ .+.+++++++..-+..++.++.++...+.+.
T Consensus 207 r~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~ 286 (678)
T KOG1293|consen 207 RGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQY 286 (678)
T ss_pred ccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHH
Confidence 66666544433322 33334 3445555555555555555555544332000
Q ss_pred -------------------------------HHHHHHcCCHHHHHHhc--------------------------------
Q 037562 443 -------------------------------VQAVIEAGVYPRLVELL-------------------------------- 459 (670)
Q Consensus 443 -------------------------------~~~~~~~~~i~~L~~lL-------------------------------- 459 (670)
.....+....+.+..++
T Consensus 287 ~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~ 366 (678)
T KOG1293|consen 287 NCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLE 366 (678)
T ss_pred hhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcc
Confidence 00000011111111111
Q ss_pred --------------------CCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHH
Q 037562 460 --------------------GHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISN 519 (670)
Q Consensus 460 --------------------~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~ 519 (670)
...+..++.+|+.++.+++..-......+-...+..++++++..+ +..++..+.++++|
T Consensus 367 i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~~~i~~~~lgai~N 445 (678)
T KOG1293|consen 367 ISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-EIMIMGITLGAICN 445 (678)
T ss_pred hhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-chhHHHHHHHHHHH
Confidence 123445667777777777653332222234557889999999888 99999999999999
Q ss_pred hhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHH
Q 037562 520 ITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCL 599 (670)
Q Consensus 520 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 599 (670)
+..........++..|+|+.+...+.+.++.++..+.|+|.++...++......+...=.-..+..+..++++.|++.++
T Consensus 446 lVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~f 525 (678)
T KOG1293|consen 446 LVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCF 525 (678)
T ss_pred HHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHH
Confidence 99977778889999999999999999999999999999999999986666666656555667788888999999999999
Q ss_pred HHHHHHHHhhh
Q 037562 600 EGLENILKVGV 610 (670)
Q Consensus 600 ~~l~~l~~~~~ 610 (670)
..+.|+.....
T Consensus 526 qllRNl~c~~~ 536 (678)
T KOG1293|consen 526 QLLRNLTCNSR 536 (678)
T ss_pred HHHHHhhcCcH
Confidence 99999877643
No 36
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=9.8e-12 Score=124.68 Aligned_cols=321 Identities=16% Similarity=0.186 Sum_probs=215.3
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhc----CChHHHHHHhcccCChhHHHHHHHHHHhhhcCCC
Q 037562 324 GAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQ----GALIPLLAELNENANLSMLRTATWTLFNFCRGKP 399 (670)
Q Consensus 324 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~----~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~ 399 (670)
.++|.|+.+|.+++....+.|..+|..+|.+++..-+.-... -.+|.++++. ++.++.+|..|..++..+.-..+
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~-~h~spkiRs~A~~cvNq~i~~~~ 206 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFF-KHPSPKIRSHAVGCVNQFIIIQT 206 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHH-hCCChhHHHHHHhhhhheeecCc
Confidence 468999999999999999999999999998876533221111 1367778887 77899999999999998887765
Q ss_pred CCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 037562 400 QPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVK 479 (670)
Q Consensus 400 ~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 479 (670)
..-.......+..+..+-.+.+++||..++.++..+.+..++.....+. ++++.++...++.+++|...||.....++.
T Consensus 207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~-~IveyML~~tqd~dE~VALEACEFwla~ae 285 (885)
T KOG2023|consen 207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLD-NIVEYMLQRTQDVDENVALEACEFWLALAE 285 (885)
T ss_pred HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchH-HHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence 5555566788888888888889999999999999998776655444443 788889999999999999999999999987
Q ss_pred CCchhhHHHH--hCCChHHHHHhhccCCchhH-HH---------------------------------------------
Q 037562 480 GDDFQTQCII--NCGALPYFLDMLVHNHEESI-KK--------------------------------------------- 511 (670)
Q Consensus 480 ~~~~~~~~l~--~~~~~~~L~~~l~~~~~~~v-~~--------------------------------------------- 511 (670)
.. .....+. -..++|.|++-+..+++..+ ..
T Consensus 286 qp-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD 364 (885)
T KOG2023|consen 286 QP-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD 364 (885)
T ss_pred Cc-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence 54 2122111 22456666655433210000 00
Q ss_pred -HHHHHHHHhhcCCHHHHHHHHhcCCh----HHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhh
Q 037562 512 -EVSWIISNITCGNREQIQAVIDSGLI----GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDL 586 (670)
Q Consensus 512 -~a~~~L~~l~~~~~~~~~~l~~~~~i----~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~l 586 (670)
..-|-|+..++..-+....+....++ |.|-+.|.+++..+|+.++.|++.++..+......++- ..++.|+++
T Consensus 365 ~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lp--eLip~l~~~ 442 (885)
T KOG2023|consen 365 AFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLP--ELIPFLLSL 442 (885)
T ss_pred ccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchH--HHHHHHHHH
Confidence 00133333322222222222333344 44444555778899999999999999875444444433 268999999
Q ss_pred ccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 037562 587 LLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYWS 662 (670)
Q Consensus 587 l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~~ 662 (670)
++++.+-||.-.+|.|+++...--... ....+...+ ..+-.-.-+.+..|++.|-.+..++-+
T Consensus 443 L~DKkplVRsITCWTLsRys~wv~~~~-------~~~~f~pvL------~~ll~~llD~NK~VQEAAcsAfAtleE 505 (885)
T KOG2023|consen 443 LDDKKPLVRSITCWTLSRYSKWVVQDS-------RDEYFKPVL------EGLLRRLLDSNKKVQEAACSAFATLEE 505 (885)
T ss_pred hccCccceeeeeeeeHhhhhhhHhcCC-------hHhhhHHHH------HHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 999999999999999988754332211 111122222 222222345778899988777766543
No 37
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.41 E-value=2.8e-10 Score=113.79 Aligned_cols=350 Identities=13% Similarity=0.123 Sum_probs=233.2
Q ss_pred ccHHHHHHHhc-CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHc-----CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC
Q 037562 238 EILPAMVDGVW-SDDNSLQLEATTLFINLLSFDRSPPIDEVIQS-----GVVPRFVEFLMRQDYPQLQFKAAWALTNIAS 311 (670)
Q Consensus 238 ~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-----g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 311 (670)
.....+++.+. ..+.++....+..+..+.... +.....+.+. +....++.+|..++ ..++..|+.+++.+..
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~~ 130 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLAC 130 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHHh
Confidence 44677777776 466788888888888887764 3444455543 46778888998888 7999999999999987
Q ss_pred CChhhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccC-ChhHHHHHHH
Q 037562 312 GTSENTKVVIDHGAVPIFVKLLASP-SVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENA-NLSMLRTATW 389 (670)
Q Consensus 312 ~~~~~~~~i~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~-~~~~~~~a~~ 389 (670)
.++.........-.++.+...++++ +...+..|+.+|..+.... ..|..+.+.++++.|+..+.... +.+++..++.
T Consensus 131 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~-~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll 209 (429)
T cd00256 131 FGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVD-EYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIF 209 (429)
T ss_pred cCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCc-hHHHHHHHccCHHHHHHHHhhccccHHHHHHHHH
Confidence 4433221111111334555666653 4777888899999988654 57888888889999999996655 6688999999
Q ss_pred HHHhhhcCCCCCChhhhhhhHHHHHHhhccC-ChhHHHHHHHHHHHhccCC------hHHHHHHHHcCCHHHHHHhcCC-
Q 037562 390 TLFNFCRGKPQPPFNQVRPALPVLAQLIRSN-DEEVLTDACWALSYLSDGT------NDKVQAVIEAGVYPRLVELLGH- 461 (670)
Q Consensus 390 ~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~al~~L~~l~~~~------~~~~~~~~~~~~i~~L~~lL~~- 461 (670)
+++-++...+........+.++.++.+++.. .+.+.+-++.++.|+...+ ......+++.|+.+.+..+...
T Consensus 210 ~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk 289 (429)
T cd00256 210 CIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRK 289 (429)
T ss_pred HHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCC
Confidence 9999998865333344478999999999865 5889999999999998643 1233446666665544444433
Q ss_pred -CCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCC---chhHHHHHHHHHHHhhcCCHHHHHHHHhcC--
Q 037562 462 -SSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNH---EESIKKEVSWIISNITCGNREQIQAVIDSG-- 535 (670)
Q Consensus 462 -~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~-- 535 (670)
.|+++... +..+....... +-+..-++....=+.++. +|.-+.+..| .++...+-+.+
T Consensus 290 ~~DedL~ed-l~~L~e~L~~~------~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW---------~EN~~kf~~~~~~ 353 (429)
T cd00256 290 YDDEDLTDD-LKFLTEELKNS------VQDLSSFDEYKSELRSGRLHWSPVHKSEKFW---------RENADRLNEKNYE 353 (429)
T ss_pred CCcHHHHHH-HHHHHHHHHHH------HHHcCCHHHHHHHHhcCCccCCCCCCCchHH---------HHHHHHHHhcchH
Confidence 34443332 22222221100 001111111111111110 1111111222 12333344333
Q ss_pred ChHHHHHHhh-cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHH
Q 037562 536 LIGPIVNLLQ-NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILK 607 (670)
Q Consensus 536 ~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~ 607 (670)
++..|+++++ +.|+.+..-||.-++.++.. .|..+..+-+.|+-..+++++.++|++|+..|+.++..++-
T Consensus 354 llk~L~~iL~~s~d~~~laVAc~Dige~vr~-~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 425 (429)
T cd00256 354 LLKILIHLLETSVDPIILAVACHDIGEYVRH-YPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV 425 (429)
T ss_pred HHHHHHHHHhcCCCcceeehhhhhHHHHHHH-CccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 4778899986 66889999999999999998 56777777789999999999999999999999999998863
No 38
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.37 E-value=1.5e-11 Score=104.07 Aligned_cols=119 Identities=34% Similarity=0.580 Sum_probs=110.3
Q ss_pred HHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 037562 276 EVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDS 355 (670)
Q Consensus 276 ~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 355 (670)
.+++.|+++.+++++.+++ ++++..+++++++++..+++....+++.|+++.+++++.++++.++..|+++|++++.+.
T Consensus 2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 4678899999999999988 899999999999999977999999999999999999999999999999999999999888
Q ss_pred chhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhc
Q 037562 356 PRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCR 396 (670)
Q Consensus 356 ~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~ 396 (670)
+..+..+.+.|+++.++..+ ++.+..+++.++++|.+++.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence 77788888999999999999 66688999999999999873
No 39
>PTZ00429 beta-adaptin; Provisional
Probab=99.37 E-value=3.4e-09 Score=114.56 Aligned_cols=370 Identities=12% Similarity=0.088 Sum_probs=237.0
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT 317 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 317 (670)
..++.+++.+.+++..++.-..-.+.+.+... ++ ...+ +++.+.+-+.+++ +.+|..|++.++++-. ++..
T Consensus 68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~-pe-lalL----aINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~ 138 (746)
T PTZ00429 68 YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQ-PE-KALL----AVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVL 138 (746)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-hH-HHHH----HHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHH
Confidence 34778888888889999988888888886542 22 1111 4677788888888 9999999999999865 3433
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562 318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG 397 (670)
Q Consensus 318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 397 (670)
+. +++.+.+.+.+.++.||..|+.++.++...+++ .+.+.+.++.+..++ .+.++.|+.+|+.+|..+...
T Consensus 139 e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 139 EY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHh
Confidence 33 356778888999999999999999999866653 344556778888877 788999999999999999876
Q ss_pred CCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHh
Q 037562 398 KPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477 (670)
Q Consensus 398 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 477 (670)
.+. ......+.+..+...+..-++-.+..++.+|.......+... ..++..+...|++.++.|...|++++.++
T Consensus 210 ~~~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l 283 (746)
T PTZ00429 210 GSE-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANL 283 (746)
T ss_pred Cch-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 543 344456667777777777788888888888876543222222 25677888999999999999999999999
Q ss_pred hcCC-chhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHH-------------------------
Q 037562 478 VKGD-DFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAV------------------------- 531 (670)
Q Consensus 478 ~~~~-~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l------------------------- 531 (670)
.... +.....+. ..+...++.++ ++ +++++..+...+.-+....+.....-
T Consensus 284 ~~~~~~~~~~~~~-~rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~L 360 (746)
T PTZ00429 284 ASRCSQELIERCT-VRVNTALLTLS-RR-DAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKL 360 (746)
T ss_pred cCcCCHHHHHHHH-HHHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHH
Confidence 7642 22222111 12334555553 44 67888888777766655433321110
Q ss_pred Hhc----CChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHH
Q 037562 532 IDS----GLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILK 607 (670)
Q Consensus 532 ~~~----~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~ 607 (670)
.+. .++..|.....+.+.+++..++.+++.++... +.... .++..|+++++.... +...++.++..+++
T Consensus 361 ane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~-~~~a~-----~cV~~Ll~ll~~~~~-~v~e~i~vik~Ilr 433 (746)
T PTZ00429 361 VTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKV-DSVAP-----DCANLLLQIVDRRPE-LLPQVVTAAKDIVR 433 (746)
T ss_pred cCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC-hHHHH-----HHHHHHHHHhcCCch-hHHHHHHHHHHHHH
Confidence 000 12233333333445566666666666666532 22222 245666666654332 33345555555554
Q ss_pred hhhhhhccCCCCCCccHHHHHHHHhchHHHHHH-h--hcCCCHHHHHHHHHHHHHhc
Q 037562 608 VGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIEN-L--QSHDDNGISEKAVEILETYW 661 (670)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~-L--~~~~~~~v~~~a~~~l~~~~ 661 (670)
..+. .+ .+..|.. + ..-.+++.+....|+|.+|-
T Consensus 434 kyP~------------~~--------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~ 470 (746)
T PTZ00429 434 KYPE------------LL--------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYC 470 (746)
T ss_pred HCcc------------HH--------HHHHHHHhhcccccccHHHHHHHHHHHHhhH
Confidence 3221 00 1222221 1 23356677777788888874
No 40
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.36 E-value=5.5e-10 Score=121.01 Aligned_cols=357 Identities=18% Similarity=0.193 Sum_probs=245.0
Q ss_pred HHHHHhcCC--ChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 037562 242 AMVDGVWSD--DNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKV 319 (670)
Q Consensus 242 ~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 319 (670)
.+.+.+.+. +...+..++..+..+...+ .+. ..+.+.+++++.+.+ ...+..+-.++..+...+++....
T Consensus 8 el~~~~~~~~~~~~~~~~~l~kli~~~~~G-~~~------~~~~~~vi~l~~s~~-~~~Krl~yl~l~~~~~~~~~~~~l 79 (526)
T PF01602_consen 8 ELAKILNSFKIDISKKKEALKKLIYLMMLG-YDI------SFLFMEVIKLISSKD-LELKRLGYLYLSLYLHEDPELLIL 79 (526)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCSSSS-HHHHHHHHHHHHHHTTTSHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcC-CCC------chHHHHHHHHhCCCC-HHHHHHHHHHHHHHhhcchhHHHH
Confidence 344444444 6667777777666554433 221 147888899999777 899999999999998866663333
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCC
Q 037562 320 VIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKP 399 (670)
Q Consensus 320 i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~ 399 (670)
++..+.+-+.++++.++..|++++++++ .++..+. .++.+.+.+ .++++.+|+.|+.++..+....|
T Consensus 80 -----~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll-~~~~~~VRk~A~~~l~~i~~~~p 146 (526)
T PF01602_consen 80 -----IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLL-SDPSPYVRKKAALALLKIYRKDP 146 (526)
T ss_dssp -----HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHH-HSSSHHHHHHHHHHHHHHHHHCH
T ss_pred -----HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHh-cCCchHHHHHHHHHHHHHhccCH
Confidence 3678888899999999999999999997 3333333 367777777 78889999999999999998754
Q ss_pred CCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 037562 400 QPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVK 479 (670)
Q Consensus 400 ~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 479 (670)
... ... .++.+.+++.+.|+.++..|+.++..+ ..++.....+. ...+..+..++...++-.+..+++++..++.
T Consensus 147 ~~~--~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~-~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~ 221 (526)
T PF01602_consen 147 DLV--EDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLI-PKLIRILCQLLSDPDPWLQIKILRLLRRYAP 221 (526)
T ss_dssp CCH--HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHH-HHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS
T ss_pred HHH--HHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhH-HHHHHHhhhcccccchHHHHHHHHHHHhccc
Confidence 321 112 689999999999999999999999999 32332211122 2455667777778888889999999998887
Q ss_pred CCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHH
Q 037562 480 GDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAI 559 (670)
Q Consensus 480 ~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 559 (670)
..+..... ..+++.+..++++. ++.|..+++.++..+... +. .-..+++.|..++.+++++++..++.+|
T Consensus 222 ~~~~~~~~---~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~-~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L 291 (526)
T PF01602_consen 222 MEPEDADK---NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPS-PE-----LLQKAINPLIKLLSSSDPNVRYIALDSL 291 (526)
T ss_dssp SSHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSS-HH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred CChhhhhH---HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcc-hH-----HHHhhHHHHHHHhhcccchhehhHHHHH
Confidence 65544411 34677888888888 899999999999988553 22 2234678899999988999999999999
Q ss_pred HHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHH
Q 037562 560 SNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIE 639 (670)
Q Consensus 560 ~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~ 639 (670)
..++... +.. +. +....+..+..+++..++..++.++..+...... .. .++.|.
T Consensus 292 ~~l~~~~-~~~----v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~--------------~~------Il~eL~ 345 (526)
T PF01602_consen 292 SQLAQSN-PPA----VF-NQSLILFFLLYDDDPSIRKKALDLLYKLANESNV--------------KE------ILDELL 345 (526)
T ss_dssp HHHCCHC-HHH----HG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHH--------------HH------HHHHHH
T ss_pred HHhhccc-chh----hh-hhhhhhheecCCCChhHHHHHHHHHhhcccccch--------------hh------HHHHHH
Confidence 9998863 222 11 1222233333488899999999999888753321 11 134444
Q ss_pred Hhh-cCCCHHHHHHHHHHHHHh
Q 037562 640 NLQ-SHDDNGISEKAVEILETY 660 (670)
Q Consensus 640 ~L~-~~~~~~v~~~a~~~l~~~ 660 (670)
... ...+++++..+.+.|..+
T Consensus 346 ~~l~~~~d~~~~~~~i~~I~~l 367 (526)
T PF01602_consen 346 KYLSELSDPDFRRELIKAIGDL 367 (526)
T ss_dssp HHHHHC--HHHHHHHHHHHHHH
T ss_pred HHHHhccchhhhhhHHHHHHHH
Confidence 444 444666666666555543
No 41
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=3.3e-10 Score=115.89 Aligned_cols=355 Identities=17% Similarity=0.184 Sum_probs=250.9
Q ss_pred hhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcC--CChHHHHHHHHHHHHHhcCCCCCcHHHHHHcC
Q 037562 204 TIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWS--DDNSLQLEATTLFINLLSFDRSPPIDEVIQSG 281 (670)
Q Consensus 204 ~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g 281 (670)
.+++-.++++..++++-++.+... +....+..++..+++ .+..++..|+.+|.+-....+.....+.-.+-
T Consensus 145 ~~k~~slealGyice~i~pevl~~-------~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~ 217 (859)
T KOG1241|consen 145 MVKESSLEALGYICEDIDPEVLEQ-------QSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNY 217 (859)
T ss_pred HHHHHHHHHHHHHHccCCHHHHHH-------HHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhce
Confidence 488888999999999988873333 334667888888875 44679999999999887664323333444455
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh---
Q 037562 282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC--- 358 (670)
Q Consensus 282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~--- 358 (670)
++...++.-++++ .+++.+|..||..+..-..+.....+....+..-+.-+++++++|.-+++...+++|...-+.
T Consensus 218 iMqvvcEatq~~d-~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e 296 (859)
T KOG1241|consen 218 IMQVVCEATQSPD-EEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIE 296 (859)
T ss_pred eeeeeeecccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788888888 899999999999999877777777777677778888889999999999999999998432110
Q ss_pred -------------HHH--HHhcCChHHHHHHhccc------CChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhh
Q 037562 359 -------------RDL--VLSQGALIPLLAELNEN------ANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLI 417 (670)
Q Consensus 359 -------------~~~--i~~~~~i~~Ll~~l~~~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL 417 (670)
... -.-.+++|.|+++|.+. ++...-..|..||.-++..... .++..++|.+-.-+
T Consensus 297 ~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D---~Iv~~Vl~Fiee~i 373 (859)
T KOG1241|consen 297 YGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD---DIVPHVLPFIEENI 373 (859)
T ss_pred HHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc---cchhhhHHHHHHhc
Confidence 000 00124577888888541 1224455555565555543211 23347778888888
Q ss_pred ccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhH-HHHhCCChHH
Q 037562 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQ-CIINCGALPY 496 (670)
Q Consensus 418 ~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~-~l~~~~~~~~ 496 (670)
+++|-.-++.+..+++.+..+.+...-.-+-.++++.++.++.++.--++..+.|+++.++...++.+. .......++.
T Consensus 374 ~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~ 453 (859)
T KOG1241|consen 374 QNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSA 453 (859)
T ss_pred CCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHH
Confidence 899999999999999999988776655555568999999999988888999999999999987664322 2234456777
Q ss_pred HHHhhccCCchhHHHHHHHHHHHhhcCCHHHH---------HHHHhcCChHHHHHHhhc---CChhHHHHHHHHHHHhcC
Q 037562 497 FLDMLVHNHEESIKKEVSWIISNITCGNREQI---------QAVIDSGLIGPIVNLLQN---TEFDTKKEAAWAISNATK 564 (670)
Q Consensus 497 L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~---------~~l~~~~~i~~L~~ll~~---~~~~v~~~a~~aL~~l~~ 564 (670)
++.-|++. |.+...++|++.+++.+..+.. ..+.+ .++..|+..-+. .+...|..|..||+.+..
T Consensus 454 l~~gL~De--Prva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~-~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk 530 (859)
T KOG1241|consen 454 LLEGLNDE--PRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYE-AIIGSLLKVTDRADGNQSNLRSAAYEALMELIK 530 (859)
T ss_pred HHHHhhhC--chHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHH-HHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence 77777655 8899999999999985211110 00111 134444444332 346899999999999999
Q ss_pred CCCHHHHH
Q 037562 565 FGTHEQIK 572 (670)
Q Consensus 565 ~~~~~~~~ 572 (670)
........
T Consensus 531 ~st~~vy~ 538 (859)
T KOG1241|consen 531 NSTDDVYP 538 (859)
T ss_pred cCcHHHHH
Confidence 85544433
No 42
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.32 E-value=3e-11 Score=102.18 Aligned_cols=118 Identities=31% Similarity=0.519 Sum_probs=110.0
Q ss_pred HHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCH
Q 037562 446 VIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNR 525 (670)
Q Consensus 446 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~ 525 (670)
+.+.|+++.++.++.++++.++..+++++++++...+.....+++.|+++.+++++.++ ++.++..|+|++++++...+
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence 56779999999999999999999999999999998788888888999999999999998 99999999999999999887
Q ss_pred HHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcC
Q 037562 526 EQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATK 564 (670)
Q Consensus 526 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 564 (670)
.....+.+.|+++.++..+.+.+.+++..|+++|.+++.
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence 888888899999999999999999999999999999863
No 43
>PTZ00429 beta-adaptin; Provisional
Probab=99.30 E-value=3e-08 Score=107.28 Aligned_cols=294 Identities=15% Similarity=0.081 Sum_probs=202.9
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHH-HHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLF-INLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN 316 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L-~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~ 316 (670)
|.+..+.+.|.+.+...+..|++.+ ..++.+ .+.. .+++.+++++.+.+ .+++..+-..+.+++...++.
T Consensus 32 ge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G--~DvS------~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pel 102 (746)
T PTZ00429 32 GEGAELQNDLNGTDSYRKKAAVKRIIANMTMG--RDVS------YLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPEK 102 (746)
T ss_pred chHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC--CCch------HHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChHH
Confidence 3467788888888887788888754 444444 2221 25677788888888 899999999999998866554
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhc
Q 037562 317 TKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCR 396 (670)
Q Consensus 317 ~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~ 396 (670)
.-. ++..+.+-+.++++.+|..|+++++++-. +...+. .+.++.+.+ .+.++.||+.|+.++..+..
T Consensus 103 alL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~-----l~~~lkk~L-~D~~pYVRKtAalai~Kly~ 169 (746)
T PTZ00429 103 ALL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY-----TLEPLRRAV-ADPDPYVRKTAAMGLGKLFH 169 (746)
T ss_pred HHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH-----HHHHHHHHh-cCCCHHHHHHHHHHHHHHHh
Confidence 322 36788888999999999999999999842 222222 355666777 78899999999999999987
Q ss_pred CCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHH
Q 037562 397 GKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN 476 (670)
Q Consensus 397 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 476 (670)
..+. .....+.++.+..++.+.|+.|+.+|+.+|..+....+.... ...+.+..++..+..-++-.+...+.+|..
T Consensus 170 ~~pe--lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~--l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~ 245 (746)
T PTZ00429 170 DDMQ--LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE--SSNEWVNRLVYHLPECNEWGQLYILELLAA 245 (746)
T ss_pred hCcc--cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH--HHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Confidence 6553 223356788899999999999999999999999865543322 223556677777766666566666666644
Q ss_pred hhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcC-CHHHHHHHHhcCChHHHHHHhhcCChhHHHHH
Q 037562 477 IVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCG-NREQIQAVIDSGLIGPIVNLLQNTEFDTKKEA 555 (670)
Q Consensus 477 l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 555 (670)
.. +...... ..++..+...+++. ++.|.-+|+.++.++... .++....+.. .+-+.++.+ .+++++++..+
T Consensus 246 y~---P~~~~e~--~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L-~ss~~eiqyva 317 (746)
T PTZ00429 246 QR---PSDKESA--ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTL-SRRDAETQYIV 317 (746)
T ss_pred cC---CCCcHHH--HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHh-hCCCccHHHHH
Confidence 32 2211111 24677788888888 899999999999988653 2332222221 123445554 34567777777
Q ss_pred HHHHHHhcCC
Q 037562 556 AWAISNATKF 565 (670)
Q Consensus 556 ~~aL~~l~~~ 565 (670)
+..+..+...
T Consensus 318 Lr~I~~i~~~ 327 (746)
T PTZ00429 318 CKNIHALLVI 327 (746)
T ss_pred HHHHHHHHHH
Confidence 7666665553
No 44
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.29 E-value=6.7e-12 Score=146.15 Aligned_cols=164 Identities=20% Similarity=0.287 Sum_probs=122.4
Q ss_pred CccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccc
Q 037562 21 GMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLR 100 (670)
Q Consensus 21 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~ 100 (670)
..+|+.|++++|..++.++. ...+++|+.|++.+|..+..+|..+..+++|+.|++++|.+++.+ +...++++|+
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~L---p~~i~l~sL~ 707 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEIL---PTGINLKSLY 707 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCcc---CCcCCCCCCC
Confidence 34889999998888888875 457899999999999999999988888999999999999999887 2333788999
Q ss_pred eeccccccccceeccccc----------c--ccccc------------------------------cccccccccccccc
Q 037562 101 YMEIESCDKITEIVLVDD----------V--VAQDE------------------------------VITFRELKELNLLQ 138 (670)
Q Consensus 101 ~L~i~~c~~l~~~~~~~~----------~--~~~~~------------------------------~~~~~~L~~L~l~~ 138 (670)
.|.+++|..++.++.... . ..+.. ...+|+|+.|.+.+
T Consensus 708 ~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~ 787 (1153)
T PLN03210 708 RLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSD 787 (1153)
T ss_pred EEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCC
Confidence 999999987765532100 0 00000 01135677777777
Q ss_pred cccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCccceeeeeccCC
Q 037562 139 MQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRWDGE 192 (670)
Q Consensus 139 ~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~~~~~ 192 (670)
|+.+..++.. ...+++|+.|++.+|++++.+|.+. .+++|+.|++++++.-
T Consensus 788 n~~l~~lP~s--i~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L 838 (1153)
T PLN03210 788 IPSLVELPSS--IQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRL 838 (1153)
T ss_pred CCCccccChh--hhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcc
Confidence 7777766553 4568889999999999999888876 5788999988877654
No 45
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=99.28 E-value=1.6e-09 Score=108.40 Aligned_cols=345 Identities=15% Similarity=0.163 Sum_probs=229.6
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC-----CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 037562 281 GVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDH-----GAVPIFVKLLASPSVDVRKQTVWALGNVAGDS 355 (670)
Q Consensus 281 g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-----~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 355 (670)
..+..++.++.....+++..++...+..+...++.....+.+. .....++.+|..++..+...|+..|..+....
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 3567788888776658999999999999998777777777764 56788888999999999999999999998554
Q ss_pred chhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccC--ChhHHHHHHHHHH
Q 037562 356 PRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSN--DEEVLTDACWALS 433 (670)
Q Consensus 356 ~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~al~~L~ 433 (670)
+.........-.+..+...+....+...+..++.++..+...++.+......++++.|+.+|+.. +.+++..++-|++
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lW 212 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIW 212 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 32111110000223444555333456777888899999998876665555567899999999753 5689999999999
Q ss_pred HhccCChHHHHHHHHcCCHHHHHHhcCC-CCccchhHHHHHHHHhhcCCc------hhhHHHHhCCChHHHHHhhccCC-
Q 037562 434 YLSDGTNDKVQAVIEAGVYPRLVELLGH-SSSSVLTPALRTIRNIVKGDD------FQTQCIINCGALPYFLDMLVHNH- 505 (670)
Q Consensus 434 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~------~~~~~l~~~~~~~~L~~~l~~~~- 505 (670)
-++...+ ........++++.++.+++. ..+++..-++.++.|+...+. .....++..|+.+ +++.|....
T Consensus 213 lLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~ 290 (429)
T cd00256 213 LLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRKY 290 (429)
T ss_pred HHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCCC
Confidence 9987654 44456667999999999987 466788999999999987431 1233445555555 444444322
Q ss_pred -chhHHHHHHHHHHHhhc------CCHHHHHHHHhcCChHHHHHHh-hcCCh-hHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 037562 506 -EESIKKEVSWIISNITC------GNREQIQAVIDSGLIGPIVNLL-QNTEF-DTKKEAAWAISNATKFGTHEQIKHLVR 576 (670)
Q Consensus 506 -~~~v~~~a~~~L~~l~~------~~~~~~~~l~~~~~i~~L~~ll-~~~~~-~v~~~a~~aL~~l~~~~~~~~~~~l~~ 576 (670)
|+++.......-..+.. .-+++..++.. |-+. .- -+.++ =-++ +...|-+
T Consensus 291 ~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~s-g~L~----WSp~H~se~FW~E----------------N~~kf~~ 349 (429)
T cd00256 291 DDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRS-GRLH----WSPVHKSEKFWRE----------------NADRLNE 349 (429)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhc-CCcc----CCCCCCCchHHHH----------------HHHHHHh
Confidence 55544332222111110 01111111111 1100 00 00011 1122 2223322
Q ss_pred cC--CcHHHHhhc-cCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHH
Q 037562 577 EG--CVKPLCDLL-LCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKA 653 (670)
Q Consensus 577 ~~--~i~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a 653 (670)
.+ ++..|++++ ++.|+.+...|+.=++.+++..+. .+..+++.|+-+.+-+|++|+|++|+..|
T Consensus 350 ~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~-------------gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eA 416 (429)
T cd00256 350 KNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPR-------------GKDVVEQLGGKQRVMRLLNHEDPNVRYEA 416 (429)
T ss_pred cchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCcc-------------HHHHHHHcCcHHHHHHHhcCCCHHHHHHH
Confidence 22 467888888 466788888888889998887654 35678899999999999999999999999
Q ss_pred HHHHHHhc
Q 037562 654 VEILETYW 661 (670)
Q Consensus 654 ~~~l~~~~ 661 (670)
...++++.
T Consensus 417 L~avQklm 424 (429)
T cd00256 417 LLAVQKLM 424 (429)
T ss_pred HHHHHHHH
Confidence 99999875
No 46
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1.6e-10 Score=118.15 Aligned_cols=409 Identities=14% Similarity=0.153 Sum_probs=252.8
Q ss_pred cceeeccchhhhHHHHhhcchhhhhhccccCCCcccc---------chhhhhhccHHHHHHHhcCCChH-HHHHHHHHHH
Q 037562 194 HWIWVHDLNTTIKYLYLKKLGEFLQSQRSRISTPVLS---------LNLQSKLEILPAMVDGVWSDDNS-LQLEATTLFI 263 (670)
Q Consensus 194 ~~~~~~~~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~i~~l~~~l~~~~~~-~~~~a~~~L~ 263 (670)
++|. .+..++|+..-.-...-+....++....+++ -|....++.++.++.....+.+. ++..++.+++
T Consensus 78 qRWl--~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealG 155 (859)
T KOG1241|consen 78 QRWL--QLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALG 155 (859)
T ss_pred HHHH--cCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 4444 4555555544444444444444444333333 22344456677777777665554 8889999999
Q ss_pred HHhcCCCCCcHHHHHHcCCHHHHHHhhcC-CCCHHHHHHHHHHHHHHcCCCh-hhHHHHHhCCChHHHHHhhCCCCHHHH
Q 037562 264 NLLSFDRSPPIDEVIQSGVVPRFVEFLMR-QDYPQLQFKAAWALTNIASGTS-ENTKVVIDHGAVPIFVKLLASPSVDVR 341 (670)
Q Consensus 264 ~l~~~~~~~~~~~~~~~g~l~~L~~ll~~-~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~~~i~~L~~lL~~~~~~v~ 341 (670)
-+..+-..+ .-.--.+.++..++.-... +.+..+|..|..+|.+-..-.. .+....-..-+++..++.-.+++.+++
T Consensus 156 yice~i~pe-vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~ 234 (859)
T KOG1241|consen 156 YICEDIDPE-VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQ 234 (859)
T ss_pred HHHccCCHH-HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHH
Confidence 887664222 2122234466666665543 3337999999999988543111 111111122345677778888999999
Q ss_pred HHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCC-------------C--Chh--
Q 037562 342 KQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQ-------------P--PFN-- 404 (670)
Q Consensus 342 ~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~-------------~--~~~-- 404 (670)
..|..+|..+..-.-+.-..-.....+..-+..+ .++++++.-++....+++|...-. . ...
T Consensus 235 ~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~am-ks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa 313 (859)
T KOG1241|consen 235 VAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAM-KSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFA 313 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHH
Confidence 9999999998743322222222222344455566 577888888898888888754311 1 011
Q ss_pred --hhhhhHHHHHHhhccC-------ChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHH
Q 037562 405 --QVRPALPVLAQLIRSN-------DEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIR 475 (670)
Q Consensus 405 --~~~~~i~~L~~lL~~~-------~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~ 475 (670)
....++|.|+++|... +-.....|-.||.-+++...+. ++. .+++.+-.-++++++.-|..|+.+++
T Consensus 314 ~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv~-~Vl~Fiee~i~~pdwr~reaavmAFG 389 (859)
T KOG1241|consen 314 RQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD---IVP-HVLPFIEENIQNPDWRNREAAVMAFG 389 (859)
T ss_pred HHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc---chh-hhHHHHHHhcCCcchhhhhHHHHHHH
Confidence 1246788888888642 2345666666666655332211 222 45666666788899999999999999
Q ss_pred HhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHH-HHhcCChHHHHHHhhcCChhHHHH
Q 037562 476 NIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQA-VIDSGLIGPIVNLLQNTEFDTKKE 554 (670)
Q Consensus 476 ~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~-l~~~~~i~~L~~ll~~~~~~v~~~ 554 (670)
.+..+.......-+..++++.++.++.++ .-.++..++|+++.++...++.+.. ......++.++.-+ ...+.+..+
T Consensus 390 SIl~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL-~DePrva~N 467 (859)
T KOG1241|consen 390 SILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGL-NDEPRVASN 467 (859)
T ss_pred hhhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh-hhCchHHHH
Confidence 99988776665556678999999999977 8899999999999998865543211 11233445555544 347899999
Q ss_pred HHHHHHHhcCCCCHH--------HHHHHHHcCCcHHHHhhccC---CChHHHHHHHHHHHHHHHhhhhhh
Q 037562 555 AAWAISNATKFGTHE--------QIKHLVREGCVKPLCDLLLC---ADPKIVTVCLEGLENILKVGVAEM 613 (670)
Q Consensus 555 a~~aL~~l~~~~~~~--------~~~~l~~~~~i~~L~~ll~~---~~~~v~~~a~~~l~~l~~~~~~~~ 613 (670)
++|++.+++...... ....+.+ .++..|+..-+. .+..+|..+..+|..++...++..
T Consensus 468 ~CWAf~~Laea~~eA~~s~~qt~~~t~~y~-~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~v 536 (859)
T KOG1241|consen 468 VCWAFISLAEAAYEAAVSNGQTDPATPFYE-AIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDV 536 (859)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCccchhHH-HHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHH
Confidence 999999998532000 0000111 123333333332 445789999999999988766544
No 47
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=4.5e-09 Score=108.85 Aligned_cols=343 Identities=16% Similarity=0.179 Sum_probs=244.7
Q ss_pred ccHHHHHHHhcC-CChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 037562 238 EILPAMVDGVWS-DDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN 316 (670)
Q Consensus 238 ~~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~ 316 (670)
..+|.|++.+++ .+.++...|+++|..+...- +.....+++.++||.|++-|..-..-++.++++.+|..|+. ..
T Consensus 211 slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl-P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR---~H 286 (1051)
T KOG0168|consen 211 SLVPVLVALLSHEHNFDIMLLACRALTYLCEVL-PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISR---RH 286 (1051)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc-cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHh---hc
Confidence 347899999985 56899999999999997664 56677888999999999877655447999999999999987 44
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhh
Q 037562 317 TKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDS-PRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFC 395 (670)
Q Consensus 317 ~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~ 395 (670)
-..++++|++...+.++.--+..+++.|+.+..|+|..- ++--..+.+ ++|.|..++ ...|......++-++..++
T Consensus 287 ~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lL-s~~D~k~ies~~ic~~ri~ 363 (1051)
T KOG0168|consen 287 PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLL-SYQDKKPIESVCICLTRIA 363 (1051)
T ss_pred cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHH-hhccchhHHHHHHHHHHHH
Confidence 567889999999999998888899999999999999532 222234444 688888888 7777788899999999988
Q ss_pred cCCCCCC----hhhhhhhHHHHHHhhccCC----hhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCc---
Q 037562 396 RGKPQPP----FNQVRPALPVLAQLIRSND----EEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSS--- 464 (670)
Q Consensus 396 ~~~~~~~----~~~~~~~i~~L~~lL~~~~----~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~--- 464 (670)
....... .....+.+....+++.-.+ ..+-...++.+..++.+.+.....+.+.++...+..+|...+.
T Consensus 364 d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~n 443 (1051)
T KOG0168|consen 364 DGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSAN 443 (1051)
T ss_pred HhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcc
Confidence 7762221 1222677777777776442 3455566777888887777666767777777777776653110
Q ss_pred -c----c-h------hHHH---------------------------------------------------HHHHHh----
Q 037562 465 -S----V-L------TPAL---------------------------------------------------RTIRNI---- 477 (670)
Q Consensus 465 -~----v-~------~~a~---------------------------------------------------~~L~~l---- 477 (670)
. + + +... +.+..+
T Consensus 444 as~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~ 523 (1051)
T KOG0168|consen 444 ASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDT 523 (1051)
T ss_pred cccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccCc
Confidence 0 0 0 0000 011100
Q ss_pred ------------------hcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc-CCHHHHHHHHhc-CCh
Q 037562 478 ------------------VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC-GNREQIQAVIDS-GLI 537 (670)
Q Consensus 478 ------------------~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~-~~i 537 (670)
..+.++..+.+. ...++.|+++..+.-++.||..+..+|..+.. .+.+.+..++.. .+-
T Consensus 524 ~t~~~~~dkl~~~~r~~~l~nqpel~q~F~-~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vS 602 (1051)
T KOG0168|consen 524 GTSRKQQDKLNGSAREGLLKNQPELLQSFG-KDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVS 602 (1051)
T ss_pred ccchhhhhhcCCchhhhhhhcCHHHHHHHH-HHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHH
Confidence 000011111111 13678888888887799999999999999876 566777777654 455
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhcc
Q 037562 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLL 588 (670)
Q Consensus 538 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~ 588 (670)
..+-.++.++|..+..-|+...--++..-...+...|..+|++..+-++..
T Consensus 603 S~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~ 653 (1051)
T KOG0168|consen 603 SHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV 653 (1051)
T ss_pred HHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence 566678888999988888888888877655667778888888888888775
No 48
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.19 E-value=6.2e-11 Score=138.18 Aligned_cols=158 Identities=20% Similarity=0.273 Sum_probs=101.0
Q ss_pred ccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccc-----------
Q 037562 22 MEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTS----------- 90 (670)
Q Consensus 22 ~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~----------- 90 (670)
.+|+.|.+.+|..+..+|.. ...+++|+.|++++|.++..+|... .+++|+.|.+++|..++.+...
T Consensus 657 ~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~ 734 (1153)
T PLN03210 657 TNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDE 734 (1153)
T ss_pred CcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCC
Confidence 48999999999999888865 4678899999999999998887654 6788888888888766543100
Q ss_pred ------hhhhccc-------------------------------ccceeccccccccceecccccccccccccccccccc
Q 037562 91 ------SIAKTLV-------------------------------RLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKE 133 (670)
Q Consensus 91 ------~~~~~l~-------------------------------~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~ 133 (670)
+....++ +|+.|++++|+.+.+++ .....+++|+.
T Consensus 735 n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP--------~si~~L~~L~~ 806 (1153)
T PLN03210 735 TAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP--------SSIQNLHKLEH 806 (1153)
T ss_pred CccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC--------hhhhCCCCCCE
Confidence 0000122 33333333333333322 12345677777
Q ss_pred ccccccccccccccCCcccCCCCccEEeEecCCCcccccc--------------------CCcCCCCccceeeeeccCC
Q 037562 134 LNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSG--------------------GELSTPNLHKVQLSRWDGE 192 (670)
Q Consensus 134 L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~--------------------~~~~~~~L~~l~i~~~~~~ 192 (670)
|.|.+|++|+.++.+ ..+++|+.|++++|.+++.+|. .+..+++|+.|++++|+.-
T Consensus 807 L~Ls~C~~L~~LP~~---~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L 882 (1153)
T PLN03210 807 LEIENCINLETLPTG---INLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNL 882 (1153)
T ss_pred EECCCCCCcCeeCCC---CCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCc
Confidence 777777777777653 2467777777777776665543 2223566777776665543
No 49
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.15 E-value=2.6e-08 Score=95.88 Aligned_cols=349 Identities=14% Similarity=0.121 Sum_probs=231.7
Q ss_pred ccHHHHHHHhc-CCChHHHHHHHHHHHHHhcCCCCCcHHHHH-------HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 037562 238 EILPAMVDGVW-SDDNSLQLEATTLFINLLSFDRSPPIDEVI-------QSGVVPRFVEFLMRQDYPQLQFKAAWALTNI 309 (670)
Q Consensus 238 ~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-------~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l 309 (670)
..+..++..+. ...++....++..+..+.+.+ .....++ .......++.++...+ .-+...+.++++.+
T Consensus 65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d--~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d-~~iv~~~~~Ils~l 141 (442)
T KOG2759|consen 65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSED--RSRVDLFHDYAHKLKRTEWLSFLNLLNRQD-TFIVEMSFRILSKL 141 (442)
T ss_pred HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhC--chHHHHHHHHHHhhhccchHHHHHHHhcCC-hHHHHHHHHHHHHH
Confidence 45677888886 355677888888888887764 2222222 2234677889999988 68888899999998
Q ss_pred cCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHh-cccCChhHHHHH
Q 037562 310 ASGTSENTKVVIDHGAVPIFVKLLAS-PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAEL-NENANLSMLRTA 387 (670)
Q Consensus 310 ~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l-~~~~~~~~~~~a 387 (670)
+.-.......--..-....+...+.+ .+.+....|+++|-.+...+ +.|..+...+++..++..+ ....+.+++.+.
T Consensus 142 a~~g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~-eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqs 220 (442)
T KOG2759|consen 142 ACFGNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVD-EYRYAFVIADGVSLLIRILASTKCGFQLQYQS 220 (442)
T ss_pred HHhccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCc-chhheeeecCcchhhHHHHhccCcchhHHHHH
Confidence 87332211110000012334444544 66677778888999888664 5688888888888888888 555677899999
Q ss_pred HHHHHhhhcCCCCCChhhhhhhHHHHHHhhccC-ChhHHHHHHHHHHHhccCCh------HHHHHHHHcCCHHHHHHhcC
Q 037562 388 TWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSN-DEEVLTDACWALSYLSDGTN------DKVQAVIEAGVYPRLVELLG 460 (670)
Q Consensus 388 ~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~al~~L~~l~~~~~------~~~~~~~~~~~i~~L~~lL~ 460 (670)
+.+++.|+.+++........+.++.|..++++. .+.|..-++.++.|+....+ .....++..++.+.+-.+-.
T Consensus 221 ifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~ 300 (442)
T KOG2759|consen 221 IFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEE 300 (442)
T ss_pred HHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHh
Confidence 999999998875555555578999999999865 67899999999999997764 33344666566555554444
Q ss_pred C--CCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCC---chhHHHHHHHHHHHhhcCCHHHHHHHHhc-
Q 037562 461 H--SSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNH---EESIKKEVSWIISNITCGNREQIQAVIDS- 534 (670)
Q Consensus 461 ~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~l~~~- 534 (670)
. +|+++....-..-..+-. .+-+...++...+=+.++. +|.-+.+-.| .++...+-+.
T Consensus 301 rkysDEDL~~di~~L~e~L~~-------svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW---------~eNa~rlnenn 364 (442)
T KOG2759|consen 301 RKYSDEDLVDDIEFLTEKLKN-------SVQDLSSFDEYKSELRSGRLEWSPVHKSEKFW---------RENADRLNENN 364 (442)
T ss_pred cCCCcHHHHHHHHHHHHHHHH-------HHHhhccHHHHHHHHHhCCcCCCccccccchH---------HHhHHHHhhcc
Confidence 3 344433322211111111 0001111111111111110 2222222222 2344445443
Q ss_pred -CChHHHHHHhh-cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHH
Q 037562 535 -GLIGPIVNLLQ-NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILK 607 (670)
Q Consensus 535 -~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~ 607 (670)
.++..|+.+|+ +.|+.+..-|+.-++..... .|+....+.+-|+-+.++++++++|++|+..|+.|+..++.
T Consensus 365 yellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~-yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 365 YELLKILIKLLETSNDPIILCVACHDIGEYVRH-YPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV 438 (442)
T ss_pred HHHHHHHHHHHhcCCCCceeehhhhhHHHHHHh-CchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence 36889999999 45688999999999999998 78888888999999999999999999999999999998874
No 50
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.11 E-value=1.6e-08 Score=97.40 Aligned_cols=312 Identities=14% Similarity=0.120 Sum_probs=219.8
Q ss_pred hHHHHhhcchhhhhhccccCCCccccchhhhhhc-cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCH
Q 037562 205 IKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLE-ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVV 283 (670)
Q Consensus 205 i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l 283 (670)
.-+..+-.+.++++..+++.+.-... ..+.-. .-+.++..+..++.-+...+.+.+..+++.. ........-.-..
T Consensus 82 ~v~yvL~li~DmLs~d~sr~~lf~~~--a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g-~~~~~~~e~~~~~ 158 (442)
T KOG2759|consen 82 TVQYVLTLIDDMLSEDRSRVDLFHDY--AHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFG-NCKMELSELDVYK 158 (442)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHH--HHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhc-cccccchHHHHHH
Confidence 33444555667777777776433221 001112 2577888898888888888999999998765 2211110000012
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHH
Q 037562 284 PRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSVDVRKQTVWALGNVAGDSPRCRDL 361 (670)
Q Consensus 284 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~ 361 (670)
..+-..+++..+.+....|++||..+.. -++.|..++.++++..++..+.+ .+-.++.+.+.+++-++...+ ..+.
T Consensus 159 ~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~-~ae~ 236 (442)
T KOG2759|consen 159 GFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPH-AAEK 236 (442)
T ss_pred HHHHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHH-HHHH
Confidence 3444556664436888999999999998 78999999999999999998843 667899999999999986654 4567
Q ss_pred HHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCC------hhhhhhhHHHHHHhhcc---CChhHHHHHHHHH
Q 037562 362 VLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPP------FNQVRPALPVLAQLIRS---NDEEVLTDACWAL 432 (670)
Q Consensus 362 i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~------~~~~~~~i~~L~~lL~~---~~~~v~~~al~~L 432 (670)
+...+.++.|...+..+..+.|.+-++.++.|++...+... ..+..+.++..++.|.. +|+++....-..-
T Consensus 237 ~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~ 316 (442)
T KOG2759|consen 237 LKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLT 316 (442)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 77888999999999888899999999999999998874322 22234455555666653 3555544433222
Q ss_pred HHh-------ccCCh-----------------------HHHHHHHHc--CCHHHHHHhcCCCC-ccchhHHHHHHHHhhc
Q 037562 433 SYL-------SDGTN-----------------------DKVQAVIEA--GVYPRLVELLGHSS-SSVLTPALRTIRNIVK 479 (670)
Q Consensus 433 ~~l-------~~~~~-----------------------~~~~~~~~~--~~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~ 479 (670)
..+ +..+. ++...+.+. .++..|+.+|+.++ +.+..-||.=|+...+
T Consensus 317 e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr 396 (442)
T KOG2759|consen 317 EKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVR 396 (442)
T ss_pred HHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHH
Confidence 222 11100 111112221 37888999998754 7788889999999999
Q ss_pred CCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc
Q 037562 480 GDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC 522 (670)
Q Consensus 480 ~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 522 (670)
..|.....+.+.|+-+.++.+++++ +++||.+|..++..+..
T Consensus 397 ~yP~gk~vv~k~ggKe~vM~Llnh~-d~~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 397 HYPEGKAVVEKYGGKERVMNLLNHE-DPEVRYHALLAVQKLMV 438 (442)
T ss_pred hCchHhHHHHHhchHHHHHHHhcCC-CchHHHHHHHHHHHHHh
Confidence 9999999888999999999999999 99999999999988754
No 51
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=2.6e-07 Score=95.43 Aligned_cols=325 Identities=14% Similarity=0.159 Sum_probs=239.4
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCc---
Q 037562 282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSVDVRKQTVWALGNVAGDSP--- 356 (670)
Q Consensus 282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~--- 356 (670)
.|+.|+.-+.+..-.+-|..|++.|..++. ++|..+.. .+++++++.|+. .++++...++.++.++..++.
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 477888877776557889999999999987 77777664 557999998876 789999999999999986542
Q ss_pred ---h----------hHHH-HHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChh---hhhhhHHHHHHhhcc
Q 037562 357 ---R----------CRDL-VLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFN---QVRPALPVLAQLIRS 419 (670)
Q Consensus 357 ---~----------~~~~-i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~---~~~~~i~~L~~lL~~ 419 (670)
. ..+. +...+.|..++..+ ...|-.||..+...+.++....|..... ....++..++.+|.+
T Consensus 99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D 177 (970)
T KOG0946|consen 99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD 177 (970)
T ss_pred hcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence 1 1122 33346677777887 7778899999999999998877544332 226789999999999
Q ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCC---Cc-cchhHHHHHHHHhhcCCchhhHHHHhCCChH
Q 037562 420 NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHS---SS-SVLTPALRTIRNIVKGDDFQTQCIINCGALP 495 (670)
Q Consensus 420 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~---~~-~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~ 495 (670)
..+.+|..++-.|..++..++...+.+.-.+++..|..++... +. -|...|+..|.|+..++......+.+.+.++
T Consensus 178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~ 257 (970)
T KOG0946|consen 178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP 257 (970)
T ss_pred hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence 9999999999999999988876666666668999999999863 22 4788899999999999988888888999999
Q ss_pred HHHHhhccCC--chh--------H--HHHHHHHHHHhhc-CC-----HHHHHHHHhcCChHHHHHHhhcC--ChhHHHHH
Q 037562 496 YFLDMLVHNH--EES--------I--KKEVSWIISNITC-GN-----REQIQAVIDSGLIGPIVNLLQNT--EFDTKKEA 555 (670)
Q Consensus 496 ~L~~~l~~~~--~~~--------v--~~~a~~~L~~l~~-~~-----~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a 555 (670)
.|.++|.-.. +.+ | ...|..+++.+.. ++ ..+.+.+.+.+++..|..++.++ ..+++..+
T Consensus 258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltes 337 (970)
T KOG0946|consen 258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTES 337 (970)
T ss_pred HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHH
Confidence 9998875321 211 1 1345566666655 21 12234566788999999998866 36899999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHcCC----------cHHHHhhccC-CChHHHHHHHHHHHHHHHhhhhh
Q 037562 556 AWAISNATKFGTHEQIKHLVREGC----------VKPLCDLLLC-ADPKIVTVCLEGLENILKVGVAE 612 (670)
Q Consensus 556 ~~aL~~l~~~~~~~~~~~l~~~~~----------i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~ 612 (670)
..+++++... +......|.+-.+ +-.++.+..+ .....|.+++.++..++......
T Consensus 338 iitvAevVRg-n~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~g 404 (970)
T KOG0946|consen 338 IITVAEVVRG-NARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDG 404 (970)
T ss_pred HHHHHHHHHh-chHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhh
Confidence 9999999886 4444455554221 1123333333 44578889999998887765543
No 52
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=3.2e-08 Score=94.22 Aligned_cols=190 Identities=19% Similarity=0.212 Sum_probs=160.6
Q ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHH
Q 037562 420 NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLD 499 (670)
Q Consensus 420 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~ 499 (670)
.+.+-+..++.-|..++..-+ +...+...|++..++..+.+++..+|..|+++|+..+.+++.....+++.|+++.|+.
T Consensus 95 ~~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~ 173 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK 173 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence 356667777777777775433 5566888899999999999999999999999999999999999999999999999999
Q ss_pred hhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhc--CChhHHHHHHHHHHHhcCCCCHHHHHHHHHc
Q 037562 500 MLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQN--TEFDTKKEAAWAISNATKFGTHEQIKHLVRE 577 (670)
Q Consensus 500 ~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~ 577 (670)
.+.++.+..++..|.++++.+.+..+.....+...++...|.+++++ .+..++..|+..+..+... .......+...
T Consensus 174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~-~~s~~d~~~~~ 252 (342)
T KOG2160|consen 174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE-DKSDEDIASSL 252 (342)
T ss_pred HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh-hhhhhhHHHHh
Confidence 99987677899999999999999988888899998899999999997 5678899999999999886 33344455667
Q ss_pred CCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhh
Q 037562 578 GCVKPLCDLLLCADPKIVTVCLEGLENILKVGVA 611 (670)
Q Consensus 578 ~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~ 611 (670)
+....+..+....+.++...++.++...+.....
T Consensus 253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~ 286 (342)
T KOG2160|consen 253 GFQRVLENLISSLDFEVNEAALTALLSLLSELST 286 (342)
T ss_pred hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhh
Confidence 7777788888888899999998888877665443
No 53
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=2.9e-07 Score=94.18 Aligned_cols=217 Identities=18% Similarity=0.192 Sum_probs=162.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 037562 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKV 319 (670)
Q Consensus 240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 319 (670)
-+.++.+|.+..+-++..|+..+.++...- ++..+ ..+|.|++-|.++| +.|+.+|+.+++.+|..+|++.-
T Consensus 146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL- 217 (877)
T KOG1059|consen 146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYL- 217 (877)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCcccc-
Confidence 467888889999999999999998875432 22211 25899999999999 99999999999999997777643
Q ss_pred HHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHh--hhc
Q 037562 320 VIDHGAVPIFVKLLAS-PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFN--FCR 396 (670)
Q Consensus 320 i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~--l~~ 396 (670)
..-|.+.++|-+ .+.=+....+..+++|+--.|..... .++++.+++....-..+...+..++.. ++.
T Consensus 218 ----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 218 ----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred ----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence 245778887765 33345556778888888777765554 488999999554444555544444332 333
Q ss_pred CCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHH
Q 037562 397 GKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN 476 (670)
Q Consensus 397 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 476 (670)
+. ........-+++.|-.++.++|+.++.-++.+++.++...+...+. .-+.++++|.+.|+.+|..|+..+.-
T Consensus 289 g~-~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~g 362 (877)
T KOG1059|consen 289 GM-SDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLYG 362 (877)
T ss_pred CC-CCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHHH
Confidence 22 2344555778889999999999999999999999999877766553 23678999999999999999999988
Q ss_pred hhc
Q 037562 477 IVK 479 (670)
Q Consensus 477 l~~ 479 (670)
+..
T Consensus 363 mVs 365 (877)
T KOG1059|consen 363 MVS 365 (877)
T ss_pred Hhh
Confidence 875
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=99.04 E-value=3.5e-08 Score=106.62 Aligned_cols=492 Identities=16% Similarity=0.134 Sum_probs=256.7
Q ss_pred cccEEEeccCcCcccccccc--------------cccCCCCcEEEEecCCCCcc-ccCC-Cccccccceeeecccccccc
Q 037562 23 EVKISEAYNCYRLENILIEE--------------SSVMNNLVILCVHCCDHLIN-LVPS-STSFQNLTNLVVSHCKRLKI 86 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~--------------~~~~~~L~~L~i~~c~~l~~-~~~~-~~~~~~L~~L~i~~c~~l~~ 86 (670)
.|++|.++++...+...... ...-.+|++|+|+|-..+.. |+.. ...||+|++|.|.|-.--..
T Consensus 84 ~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~ 163 (699)
T KOG3665|consen 84 DLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND 163 (699)
T ss_pred cccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch
Confidence 57788888776554432211 02246889999988554422 2222 23589999999988643222
Q ss_pred cccchhhhcccccceeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCC
Q 037562 87 VLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCP 166 (670)
Q Consensus 87 l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~ 166 (670)
-| .....+||+|..|+|+++. ++.+. ....+.+|+.|.+.+++=-..... ...+.+.+|+.|+|+.=.
T Consensus 164 dF-~~lc~sFpNL~sLDIS~Tn-I~nl~---------GIS~LknLq~L~mrnLe~e~~~~l-~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 164 DF-SQLCASFPNLRSLDISGTN-ISNLS---------GISRLKNLQVLSMRNLEFESYQDL-IDLFNLKKLRVLDISRDK 231 (699)
T ss_pred hH-HHHhhccCccceeecCCCC-ccCcH---------HHhccccHHHHhccCCCCCchhhH-HHHhcccCCCeeeccccc
Confidence 11 1334689999999999874 33331 223577777777776653332111 124568899999998654
Q ss_pred Ccc------ccccCCcCCCCccceeeeeccCCccceeeccchhhhHHHHhhcchhhhhhc------cccCCCcccc----
Q 037562 167 NMK------IFSGGELSTPNLHKVQLSRWDGEEHWIWVHDLNTTIKYLYLKKLGEFLQSQ------RSRISTPVLS---- 230 (670)
Q Consensus 167 ~l~------~~p~~~~~~~~L~~l~i~~~~~~~~~~~~~~~~~~i~~l~~~~l~~~~~~~------~~~~~~~~~~---- 230 (670)
+.. .+-+....+|.|+.|+.++. ++|..+-+-+++...++.+-. ........-+
T Consensus 232 ~~~~~~ii~qYlec~~~LpeLrfLDcSgT----------di~~~~le~ll~sH~~L~~i~~~~~~~~~~~~~~~i~~ln~ 301 (699)
T KOG3665|consen 232 NNDDTKIIEQYLECGMVLPELRFLDCSGT----------DINEEILEELLNSHPNLQQIAALDCLALSAVSSTEIRVLNT 301 (699)
T ss_pred cccchHHHHHHHHhcccCccccEEecCCc----------chhHHHHHHHHHhCccHhhhhhhhhhccccccccCceeeee
Confidence 432 11222334889999977632 233333333333332222222 1111110000
Q ss_pred chhhhhhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHc
Q 037562 231 LNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIA 310 (670)
Q Consensus 231 ~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~ 310 (670)
.+.+.. +..+.....-..+.....++..+..+.... +.....--...+..++..++... ...+.....++..++
T Consensus 302 at~~s~---i~~L~~~~~l~r~~~v~~cl~~l~~~~~~~--~~~~~~~~~~~l~~i~~sm~~~~-s~~~i~~~~CL~~i~ 375 (699)
T KOG3665|consen 302 ATLDSS---IQALTYYLNLKRPSEVSRCLNELLDLLKSL--DSTREYDISECLKLIINSMNTFS-SSNQIQGSACLIHIV 375 (699)
T ss_pred cchhHH---HHHHHHHHHhcChHHHHHHHHHHHHHHHHh--hhhhhhhHHHHHHHHHHHHHhcC-ChhhhhHHHHHHHHH
Confidence 111111 222222222233444445555555554421 11111112224555555555444 244555566666666
Q ss_pred CCChhhHHHHHhCCChHHHHHhhCC------C-CHHHH------------------------------------------
Q 037562 311 SGTSENTKVVIDHGAVPIFVKLLAS------P-SVDVR------------------------------------------ 341 (670)
Q Consensus 311 ~~~~~~~~~i~~~~~i~~L~~lL~~------~-~~~v~------------------------------------------ 341 (670)
.+...........-++..++..... . ...+.
T Consensus 376 ~~~~~~l~~~~~~~~l~~LLn~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (699)
T KOG3665|consen 376 KHTKQRLSPLLVSLLLKVLLNLVEKLDTLDSNDELTLCNSIILLLSLLVSRRKLLSVLDHHEQDNIQQRLTVCLSISTAC 455 (699)
T ss_pred HhhhhccChHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHhhcchhHH
Confidence 5332111111111112222222111 0 00000
Q ss_pred ---------------------------------HHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHH
Q 037562 342 ---------------------------------KQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTAT 388 (670)
Q Consensus 342 ---------------------------------~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~ 388 (670)
..-..++++++...+..-..+.+.|++..+...+......+++..+.
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il 535 (699)
T KOG3665|consen 456 QVVSITKVNVGELGIVLTLLLRIKLRKIYWCDDVLEFTALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKIL 535 (699)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHhhccchhhHHHHHHHHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHH
Confidence 00011556777777777788889999999999997777888999999
Q ss_pred HHHHhhhcCCCCCChhhhhhhHH--HHHHhhccCCh-hHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCcc
Q 037562 389 WTLFNFCRGKPQPPFNQVRPALP--VLAQLIRSNDE-EVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSS 465 (670)
Q Consensus 389 ~~L~~l~~~~~~~~~~~~~~~i~--~L~~lL~~~~~-~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~ 465 (670)
..+.+++...+..........+. .+..++..-+. +.-..++..++.+....++... ..
T Consensus 536 ~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~ersY~~~siLa~ll~~~~~~~~-------------------~~ 596 (699)
T KOG3665|consen 536 GLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIERSYNAASILALLLSDSEKTTE-------------------CV 596 (699)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhCCCcCcc-------------------cc
Confidence 99999998764443333322222 33334444343 7777777777777655432111 11
Q ss_pred chhHHHHHHHHhhcCCchhhHHHHhCCChHH-HHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHh
Q 037562 466 VLTPALRTIRNIVKGDDFQTQCIINCGALPY-FLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLL 544 (670)
Q Consensus 466 v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~-L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll 544 (670)
.+..+...+......-+.......-...+.. +..++.....+..+..|.|++.+++...+++.+...+.++++.+.+.-
T Consensus 597 ~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (699)
T KOG3665|consen 597 FRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIR 676 (699)
T ss_pred chHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcc
Confidence 2222222222222111111111111222333 555666555778899999999999998888888888888888887764
Q ss_pred hc-CChhHHHHHHHHHHH
Q 037562 545 QN-TEFDTKKEAAWAISN 561 (670)
Q Consensus 545 ~~-~~~~v~~~a~~aL~~ 561 (670)
.. ...+++..+...+.+
T Consensus 677 ~~~~~~~~~~~~~~~i~~ 694 (699)
T KOG3665|consen 677 VLSEVVDVKEEAVLVIES 694 (699)
T ss_pred hhHHHHHHHHHHHHHhhc
Confidence 42 244555555544433
No 55
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.98 E-value=1.1e-07 Score=101.98 Aligned_cols=418 Identities=15% Similarity=0.141 Sum_probs=285.7
Q ss_pred hhhHHHHhhcchhhhhhccccCCCccccch------h--h-hhhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCc
Q 037562 203 TTIKYLYLKKLGEFLQSQRSRISTPVLSLN------L--Q-SKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPP 273 (670)
Q Consensus 203 ~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~------~--~-~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~ 273 (670)
..|+.-.......++++..++++...+... + + ..-+.++.+.++..++...++..|...+..+....+.+.
T Consensus 232 ~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~ 311 (759)
T KOG0211|consen 232 DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD 311 (759)
T ss_pred HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch
Confidence 457777777888888888888877666411 0 1 111446677777777778899999999888876542321
Q ss_pred HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 037562 274 IDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAG 353 (670)
Q Consensus 274 ~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 353 (670)
-....+.+.+++..++.+ ..++...+.....+.. ...........++....++++...+.+..++.-...++.
T Consensus 312 ---d~~~~~~~~l~~~~~d~~-~~v~~~~~~~~~~L~~---~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~ 384 (759)
T KOG0211|consen 312 ---DVVKSLTESLVQAVEDGS-WRVSYMVADKFSELSS---AVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLAC 384 (759)
T ss_pred ---hhhhhhhHHHHHHhcChh-HHHHHHHhhhhhhHHH---HhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhh
Confidence 223346788899988888 6888888877777655 111122233557788888888888888777666666552
Q ss_pred -CCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHH
Q 037562 354 -DSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWAL 432 (670)
Q Consensus 354 -~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L 432 (670)
.+..++..+.....++.+-.+. .+.+..++...+.....+.--.+ ....+....|.....+++.++.|+.+..+.+
T Consensus 385 ~l~~~~~~~i~~~~ilp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~l 461 (759)
T KOG0211|consen 385 YLNASCYPNIPDSSILPEVQVLV-LDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKL 461 (759)
T ss_pred hcCcccccccchhhhhHHHHHHH-hcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHH
Confidence 2222223333444456655555 67777888877777666654433 2333466778888899999999999999877
Q ss_pred HHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHH
Q 037562 433 SYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKE 512 (670)
Q Consensus 433 ~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~ 512 (670)
..+-...+...........++.+..+-.+..++++....+.+..++.... ..+++...-+.+...+.+. ...+++.
T Consensus 462 s~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~ 537 (759)
T KOG0211|consen 462 SLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREA 537 (759)
T ss_pred HHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHH
Confidence 66554433333334455677888888877889999999999998886432 3355555666777777777 7889999
Q ss_pred HHHHHHHhhc--CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCC
Q 037562 513 VSWIISNITC--GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCA 590 (670)
Q Consensus 513 a~~~L~~l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~ 590 (670)
|+..+..++. +....+ ...++.++....+++...|...+.++..++...+.+ +.....++.+.++..++
T Consensus 538 aa~~l~~l~~~~G~~w~~-----~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e----i~~~~Llp~~~~l~~D~ 608 (759)
T KOG0211|consen 538 AARNLPALVETFGSEWAR-----LEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE----ITCEDLLPVFLDLVKDP 608 (759)
T ss_pred HHHHhHHHHHHhCcchhH-----HHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH----HHHHHHhHHHHHhccCC
Confidence 9999888876 322322 235677777766667889998888888877643333 33445789999999999
Q ss_pred ChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 037562 591 DPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILET 659 (670)
Q Consensus 591 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~ 659 (670)
.++||..+++.+..+...-... ..+....+.++.|..+++.+++..|..+.+.
T Consensus 609 vanVR~nvak~L~~i~~~L~~~----------------~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~ 661 (759)
T KOG0211|consen 609 VANVRINVAKHLPKILKLLDES----------------VRDEEVLPLLETLSSDQELDVRYRAILAFGS 661 (759)
T ss_pred chhhhhhHHHHHHHHHhhcchH----------------HHHHHHHHHHHHhccCcccchhHHHHHHHHH
Confidence 9999999999999987653322 1233335667777778888888887766543
No 56
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=3.7e-08 Score=93.75 Aligned_cols=187 Identities=16% Similarity=0.187 Sum_probs=154.7
Q ss_pred CChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHh
Q 037562 379 ANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVEL 458 (670)
Q Consensus 379 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 458 (670)
.+.+-+..|..-|..++..-.+.......|+.+.++..+++.+..+|..|+++++..+++++...+.+++.|+++.|+..
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 34455556666677777665555555567777777789999999999999999999999999999999999999999999
Q ss_pred cCCCCc-cchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccC-CchhHHHHHHHHHHHhhcCCHHHHHHHHhcCC
Q 037562 459 LGHSSS-SVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHN-HEESIKKEVSWIISNITCGNREQIQAVIDSGL 536 (670)
Q Consensus 459 L~~~~~-~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~ 536 (670)
+.++++ .++..|+.+++.+..+++.....+...++...|...++++ .+...+..|+..+..+..........+...++
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 987554 5779999999999999999999899999999999999984 27788999999999998865555555555666
Q ss_pred hHHHHHHhhcCChhHHHHHHHHHHHhcCC
Q 037562 537 IGPIVNLLQNTEFDTKKEAAWAISNATKF 565 (670)
Q Consensus 537 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 565 (670)
...+..+....+.++...+..++..+...
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 66777777788899999999998887663
No 57
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=2.3e-07 Score=96.37 Aligned_cols=373 Identities=18% Similarity=0.179 Sum_probs=258.2
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT 317 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 317 (670)
+.+|.+++.+...|-+.+.-.-..+.+.+... +.. ..++++.++.=..+++ +.+|..|++.++.+.- +...
T Consensus 49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~--P~~----a~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v--~~i~ 119 (734)
T KOG1061|consen 49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGK--PDL----AILAVNTFLKDCEDPN-PLIRALALRTMGCLRV--DKIT 119 (734)
T ss_pred hhhHHHHhhcccCCchHHHHHHHHHHHhhccC--chH----HHhhhhhhhccCCCCC-HHHHHHHhhceeeEee--hHHH
Confidence 45888999998888888888888888887763 221 2246777777777778 8999999988887754 2322
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562 318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG 397 (670)
Q Consensus 318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 397 (670)
.. +..++...+++.++.+|..|+.+..++-..++ +.+.+.|.++.|-.++ .+.++.|..+|+.+|..+...
T Consensus 120 ey-----~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 120 EY-----LCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHES 190 (734)
T ss_pred HH-----HHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHh
Confidence 22 46789999999999999999999999875543 4566788888888888 688899999999999999988
Q ss_pred CCC-CChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHH
Q 037562 398 KPQ-PPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN 476 (670)
Q Consensus 398 ~~~-~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 476 (670)
.+. .........+..++..+..-++--+..++.++.+-...++...+ .++..+...+++.+..+...+..++.+
T Consensus 191 ~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~ 265 (734)
T KOG1061|consen 191 HPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQ 265 (734)
T ss_pred CCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHH
Confidence 754 44444456666677777666777777777777776655443333 356788899999999999999999998
Q ss_pred hhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHH-------------------------HH
Q 037562 477 IVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQ-------------------------AV 531 (670)
Q Consensus 477 l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~-------------------------~l 531 (670)
+......... .+-...-+.++.++.+. . +++..|..-+.-+....+.... .+
T Consensus 266 ~~~~~~~~~~-~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~l 342 (734)
T KOG1061|consen 266 LVKYLKQVNE-LLFKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIEL 342 (734)
T ss_pred HHHHHHHHHH-HHHHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHH
Confidence 8875554223 33335667777777776 4 6665555444444333332111 01
Q ss_pred HhcC----ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHH
Q 037562 532 IDSG----LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILK 607 (670)
Q Consensus 532 ~~~~----~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~ 607 (670)
.... ++..+......-|.+....|++|+++++...... ++.+..|.++++.....+...++..+..+++
T Consensus 343 a~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-------~~cv~~lLell~~~~~yvvqE~~vvi~dilR 415 (734)
T KOG1061|consen 343 ANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-------NDCVSILLELLETKVDYVVQEAIVVIRDILR 415 (734)
T ss_pred hhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-------hhhHHHHHHHHhhcccceeeehhHHHHhhhh
Confidence 1111 2233333333457888999999999998853221 5789999999998877777788888898888
Q ss_pred hhhhhhccCCCCCCccHHHHHHHHhchHHHH-HHhhcCCCHHHHHHHHHHHHHhc
Q 037562 608 VGVAEMNTGTAVGDFNQYAQLVEEAEGLEKI-ENLQSHDDNGISEKAVEILETYW 661 (670)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l-~~L~~~~~~~v~~~a~~~l~~~~ 661 (670)
..++..+ .+ +..+ ..+.+-++|+.+....|++.+|-
T Consensus 416 kyP~~~~-------------~v-----v~~l~~~~~sl~epeak~amiWilg~y~ 452 (734)
T KOG1061|consen 416 KYPNKYE-------------SV-----VAILCENLDSLQEPEAKAALIWILGEYA 452 (734)
T ss_pred cCCCchh-------------hh-----hhhhcccccccCChHHHHHHHHHHhhhh
Confidence 7654321 11 1111 22334467777777788887763
No 58
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=1.8e-06 Score=89.55 Aligned_cols=327 Identities=17% Similarity=0.175 Sum_probs=237.5
Q ss_pred hhhhhccHHHHHHHhcC-CChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHc
Q 037562 233 LQSKLEILPAMVDGVWS-DDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQ-DYPQLQFKAAWALTNIA 310 (670)
Q Consensus 233 ~~~~~~~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~~l~ 310 (670)
.+..-+.|+.|...+-+ .-.+-++.|++.|..++.. . +..+-.-+++.++..|+.+ .++++...++..+.++.
T Consensus 17 ~~s~aETI~kLcDRvessTL~eDRR~A~rgLKa~srk----Y-R~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~ 91 (970)
T KOG0946|consen 17 QQSAAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRK----Y-REEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILT 91 (970)
T ss_pred cccHHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHH----H-HHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 34455778999998874 4478899999999888543 2 3344444678888888654 33899999999999988
Q ss_pred CCCh------hhH----------HH-HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchhHHHHHhc-CChHHH
Q 037562 311 SGTS------ENT----------KV-VIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGD-SPRCRDLVLSQ-GALIPL 371 (670)
Q Consensus 311 ~~~~------~~~----------~~-i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~-~~i~~L 371 (670)
.+++ ..+ +. +...+.|..++..+...+-.||..++..+.++... .++.++.+... -+|..+
T Consensus 92 ~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~l 171 (970)
T KOG0946|consen 92 SHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKL 171 (970)
T ss_pred hcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHH
Confidence 7542 222 22 33568889999999999999999999999998754 44566665543 568889
Q ss_pred HHHhcccCChhHHHHHHHHHHhhhcCCCCCChhh-hhhhHHHHHHhhccC---C-hhHHHHHHHHHHHhccCChHHHHHH
Q 037562 372 LAELNENANLSMLRTATWTLFNFCRGKPQPPFNQ-VRPALPVLAQLIRSN---D-EEVLTDACWALSYLSDGTNDKVQAV 446 (670)
Q Consensus 372 l~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~i~~L~~lL~~~---~-~~v~~~al~~L~~l~~~~~~~~~~~ 446 (670)
+.++ .+..+.+|..+...|..++.+.+.....+ ...++..|..++... | .-|...++..+-|+..++..+.+.+
T Consensus 172 mdlL-~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~F 250 (970)
T KOG0946|consen 172 MDLL-RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFF 250 (970)
T ss_pred HHHH-hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHH
Confidence 9999 66667888899999999999886554443 478999999999753 3 3588899999999998888888889
Q ss_pred HHcCCHHHHHHhcCC---CCc-----c-----chhHHHHHHHHhhcCC-c-----hhhHHHHhCCChHHHHHhhccCC-c
Q 037562 447 IEAGVYPRLVELLGH---SSS-----S-----VLTPALRTIRNIVKGD-D-----FQTQCIINCGALPYFLDMLVHNH-E 506 (670)
Q Consensus 447 ~~~~~i~~L~~lL~~---~~~-----~-----v~~~a~~~L~~l~~~~-~-----~~~~~l~~~~~~~~L~~~l~~~~-~ 506 (670)
.+.+.++.+.++|.. ++. . -...++.++..+..-. . ...+.+...+++..|..++-++. .
T Consensus 251 rE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp 330 (970)
T KOG0946|consen 251 REGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVP 330 (970)
T ss_pred hccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCc
Confidence 999999999988764 232 1 1234555666555321 1 11245567889999999887763 6
Q ss_pred hhHHHHHHHHHHHhhcCCHHHHHHHHhcCC---------hHH-HHHHhh-cCChhHHHHHHHHHHHhcCC
Q 037562 507 ESIKKEVSWIISNITCGNREQIQAVIDSGL---------IGP-IVNLLQ-NTEFDTKKEAAWAISNATKF 565 (670)
Q Consensus 507 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~---------i~~-L~~ll~-~~~~~v~~~a~~aL~~l~~~ 565 (670)
.+++..+.-++++..+++..+...+.+..+ +-. ++.+.. ...+..|..+.+++..+...
T Consensus 331 ~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~d 400 (970)
T KOG0946|consen 331 ADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYD 400 (970)
T ss_pred HhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhc
Confidence 789999999999999988777777765221 112 222222 34568888888888887765
No 59
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=9e-06 Score=82.98 Aligned_cols=316 Identities=15% Similarity=0.112 Sum_probs=210.7
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 037562 282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDL 361 (670)
Q Consensus 282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 361 (670)
++..+.+-++.+. +.+|.....++..+... .+... ...+.+.+.+++...+..-+..+.+.++.+..+.. -..
T Consensus 97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~-~~~~~---~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~ 169 (569)
T KOG1242|consen 97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVL-SKGLS---GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IES 169 (569)
T ss_pred HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHH-hhccC---HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhh
Confidence 5667778888888 89999999888877651 11111 11346777888888888888899999999886654 345
Q ss_pred HHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChH
Q 037562 362 VLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTND 441 (670)
Q Consensus 362 i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~ 441 (670)
+.+.+.+..+...+.+..+..-++.+..+....+..-...........+|.+..-+.+....+|..+..+...+...-+.
T Consensus 170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~ 249 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA 249 (569)
T ss_pred hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence 55677888888888444443334344444444443332223333355666666666677888988888777666533221
Q ss_pred HHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhh
Q 037562 442 KVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNIT 521 (670)
Q Consensus 442 ~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~ 521 (670)
..- + -+++.++.-+....|+.+..++..++.++...+.+.. .....++|.+.+.|.+. .+++|+.+..++.+++
T Consensus 250 ~aV---K-~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~~ 323 (569)
T KOG1242|consen 250 YAV---K-LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDT-KPEVRKAGIETLLKFG 323 (569)
T ss_pred chh---h-HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccC-CHHHHHHHHHHHHHHH
Confidence 111 1 2334444444445889999999999999987776555 45568999999999999 9999999999999987
Q ss_pred c--CCHHHHHHHHh------------------------------cC----ChHHHHHHhhcCChhHHHHHHHHHHHhcCC
Q 037562 522 C--GNREQIQAVID------------------------------SG----LIGPIVNLLQNTEFDTKKEAAWAISNATKF 565 (670)
Q Consensus 522 ~--~~~~~~~~l~~------------------------------~~----~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 565 (670)
. .+++ ++.++. .. ++|.|.+-+...+..+++.++..+.|++.-
T Consensus 324 svidN~d-I~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~L 402 (569)
T KOG1242|consen 324 SVIDNPD-IQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKL 402 (569)
T ss_pred HhhccHH-HHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHh
Confidence 6 2332 221110 11 234444444455677889999999999875
Q ss_pred C-CHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhh
Q 037562 566 G-THEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAE 612 (670)
Q Consensus 566 ~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~ 612 (670)
- ++.....++.. .++.|-..+.+..|++|..+.++|+.+.+.....
T Consensus 403 veDp~~lapfl~~-Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 403 VEDPKDLAPFLPS-LLPGLKENLDDAVPEVRAVAARALGALLERLGEV 449 (569)
T ss_pred hcCHHHHhhhHHH-HhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh
Confidence 3 34333333322 6777777778889999999999998888765443
No 60
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=2e-06 Score=89.50 Aligned_cols=371 Identities=15% Similarity=0.157 Sum_probs=238.3
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT 317 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 317 (670)
+..|.+.+.++..++.++..|+.+...+.... .+.... +++...++|.+.+ ..|...++..+..++..+++..
T Consensus 142 dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~-P~l~e~-----f~~~~~~lL~ek~-hGVL~~~l~l~~e~c~~~~~~l 214 (866)
T KOG1062|consen 142 DLAPEVERLLQHRDPYIRKKAALCAVRFIRKV-PDLVEH-----FVIAFRKLLCEKH-HGVLIAGLHLITELCKISPDAL 214 (866)
T ss_pred HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-chHHHH-----hhHHHHHHHhhcC-CceeeeHHHHHHHHHhcCHHHH
Confidence 34577777888888999999988888876653 222222 5666778888777 6888888888888888777766
Q ss_pred HHHHhCCChHHHHHhhCC---------------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccC---
Q 037562 318 KVVIDHGAVPIFVKLLAS---------------PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENA--- 379 (670)
Q Consensus 318 ~~i~~~~~i~~L~~lL~~---------------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~--- 379 (670)
..+.+ .++.|+..|++ ++|-++...++.|.-+..+++...+.+.+ ++..+...+
T Consensus 215 ~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D------iLaqvatntdss 286 (866)
T KOG1062|consen 215 SYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND------ILAQVATNTDSS 286 (866)
T ss_pred HHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH------HHHHHHhccccc
Confidence 66655 56666665532 46888888999998888887776655433 222221221
Q ss_pred ---ChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHH
Q 037562 380 ---NLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLV 456 (670)
Q Consensus 380 ---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~ 456 (670)
...+...+..++..+-.+.+ ...-++..|-++|.+.|..++.-++..|......++...+... ..++
T Consensus 287 kN~GnAILYE~V~TI~~I~~~~~-----LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr-----~tIl 356 (866)
T KOG1062|consen 287 KNAGNAILYECVRTIMDIRSNSG-----LRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHR-----STIL 356 (866)
T ss_pred ccchhHHHHHHHHHHHhccCCch-----HHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHH-----HHHH
Confidence 12444455555544443321 1234667788899999999999999999998877776555322 5789
Q ss_pred HhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcC-CHHHHHHHHhcC
Q 037562 457 ELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCG-NREQIQAVIDSG 535 (670)
Q Consensus 457 ~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~ 535 (670)
.+|+++|..++..|+..+..+... ..+.. .+..++.+|... +++++...+.-+..++.. .|+.+-
T Consensus 357 eCL~DpD~SIkrralELs~~lvn~--~Nv~~-----mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~k~W------ 422 (866)
T KOG1062|consen 357 ECLKDPDVSIKRRALELSYALVNE--SNVRV-----MVKELLEFLESS-DEDFKADIASKIAELAEKFAPDKRW------ 422 (866)
T ss_pred HHhcCCcHHHHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCcchh------
Confidence 999999999999999999888753 33442 356788899888 899999988888888762 232221
Q ss_pred ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHH----HHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHH---h
Q 037562 536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQI----KHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILK---V 608 (670)
Q Consensus 536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~----~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~---~ 608 (670)
.++.+...+.....-|+..+...+..+...+.++.- ..++.. +.... ++.-..+.+...+.|+++..-+ +
T Consensus 423 ~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a--~~~~~-~~~is~e~l~qVa~W~IGEYGdlll~ 499 (866)
T KOG1062|consen 423 HIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLA--LSEDT-LLDISQEPLLQVASWCIGEYGDLLLD 499 (866)
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHH--Hhhhh-hhhhhhhhHHHHHHHHhhhhhHHhhc
Confidence 345666777766666666666666666555412211 111110 00001 2234455667788888876542 2
Q ss_pred hhhhhccCCCCCCccHHHHHHHHhchHHHHHHhh--cCCCHHHHHHHHHHHHHhc
Q 037562 609 GVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQ--SHDDNGISEKAVEILETYW 661 (670)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~--~~~~~~v~~~a~~~l~~~~ 661 (670)
+... .. .....++.+++.|..++ +..+..++.+|..++.++.
T Consensus 500 ~~~~-~~----------p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLS 543 (866)
T KOG1062|consen 500 GANE-EE----------PIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLS 543 (866)
T ss_pred Cccc-cC----------CCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 2111 11 12334566677776663 3345678888877776653
No 61
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.86 E-value=6e-08 Score=96.25 Aligned_cols=227 Identities=20% Similarity=0.252 Sum_probs=159.0
Q ss_pred hHHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchhHHHHHh------cCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562 326 VPIFVKLLA--SPSVDVRKQTVWALGNVAGDSPRCRDLVLS------QGALIPLLAELNENANLSMLRTATWTLFNFCRG 397 (670)
Q Consensus 326 i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~------~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 397 (670)
...++.+|+ +.++++...++..+..+..+++...+.+.. .....++++++ +.+|..++..|+.+++.+...
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHc
Confidence 344445444 468899999999999999888876666655 23578888876 677999999999999999988
Q ss_pred CCCCChhhhhhhHHHHHHhhcc----CChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhc-----CC--CCccc
Q 037562 398 KPQPPFNQVRPALPVLAQLIRS----NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELL-----GH--SSSSV 466 (670)
Q Consensus 398 ~~~~~~~~~~~~i~~L~~lL~~----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-----~~--~~~~v 466 (670)
.+........+.++.++..+.+ ++.+++..++.++.++... +.....+.+.++++.+..++ .+ .+.++
T Consensus 136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 7666655445666777766664 4567788999999999865 55667788889999999999 22 34468
Q ss_pred hhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHH-HHHHHHhcCChHHHHHHhh
Q 037562 467 LTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNRE-QIQAVIDSGLIGPIVNLLQ 545 (670)
Q Consensus 467 ~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~~~i~~L~~ll~ 545 (670)
+..++.+++.++. ++.....+.+.+.++.+.++++......+-+-+..++.|+....++ ....++..|+++.+-.+..
T Consensus 215 ~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 8899999999998 4566666888889999999999876888999999999999885443 6777777777776666554
Q ss_pred c--CChhHHHHH
Q 037562 546 N--TEFDTKKEA 555 (670)
Q Consensus 546 ~--~~~~v~~~a 555 (670)
. +|+++....
T Consensus 294 rk~~Dedl~edl 305 (312)
T PF03224_consen 294 RKWSDEDLTEDL 305 (312)
T ss_dssp S--SSHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 2 466665543
No 62
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.85 E-value=3.5e-07 Score=97.27 Aligned_cols=318 Identities=17% Similarity=0.209 Sum_probs=228.7
Q ss_pred hhHHHHhhc------chhhhhhccccCCCcccc-------------------chhhhhhccHHHHHHHhc-------CCC
Q 037562 204 TIKYLYLKK------LGEFLQSQRSRISTPVLS-------------------LNLQSKLEILPAMVDGVW-------SDD 251 (670)
Q Consensus 204 ~i~~l~~~~------l~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~i~~l~~~l~-------~~~ 251 (670)
-.|+||.+. +++.+=..|-|..+...| ..++..+..+|.++..-. +.-
T Consensus 370 LFQrLFRQDLLvAsLFRNFLLAeRIMrs~nC~PVS~P~LPpt~~H~MW~aWDla~D~cLsqlp~~ild~~~~~f~~~s~F 449 (1387)
T KOG1517|consen 370 LFQRLFRQDLLVASLFRNFLLAERIMRSYNCTPVSSPELPPTYMHPMWKAWDLAMDICLSQLPQLILDAESTDFRHVSPF 449 (1387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCCCCCCcccchHHHHHHHHHHHHHHHhHHHHhccCccccccCCch
Confidence 367777554 367777888877666665 112333444554433221 122
Q ss_pred hHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH
Q 037562 252 NSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVK 331 (670)
Q Consensus 252 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~ 331 (670)
...|..|.+.-....+..+.++- -+|.+++.|-+. --|..|+..|+.+..-.+-.....+.-|+.|.+++
T Consensus 450 FteQLTAFevWLd~gse~r~PPe-------QLPiVLQVLLSQ---vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLK 519 (1387)
T KOG1517|consen 450 FTEQLTAFEVWLDYGSESRTPPE-------QLPIVLQVLLSQ---VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLK 519 (1387)
T ss_pred HHHHHHHHHHHHHhccccCCChH-------hcchHHHHHHHH---HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHH
Confidence 34566666666666555433332 256666666542 34778889999988877888888888999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccC--ChhHHHHHHHHHHhhhcCCCCCChhhh-hh
Q 037562 332 LLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENA--NLSMLRTATWTLFNFCRGKPQPPFNQV-RP 408 (670)
Q Consensus 332 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~ 408 (670)
+|+++-.+++..-+.+...+...++.++..+++.++-...++.+..+. +++-+..|+++|+.++.+.+..+.... .+
T Consensus 520 LLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~ 599 (1387)
T KOG1517|consen 520 LLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGN 599 (1387)
T ss_pred HhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcccc
Confidence 999999999999999999998888889988888888888888875422 447788999999999998754444333 56
Q ss_pred hHHHHHHhhccC-ChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcC----Cch
Q 037562 409 ALPVLAQLIRSN-DEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKG----DDF 483 (670)
Q Consensus 409 ~i~~L~~lL~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~----~~~ 483 (670)
.+...+..+.++ .+-++..++-||+.|-.+.+...-.-...++.+.|+..|.++-++||..|+.+|+.+..+ .++
T Consensus 600 li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde 679 (1387)
T KOG1517|consen 600 LIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDE 679 (1387)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccch
Confidence 777888888875 688999999999999987776655566678899999999999999999999999999875 232
Q ss_pred hhHHH------------HhCCCh---HHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHH
Q 037562 484 QTQCI------------INCGAL---PYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVI 532 (670)
Q Consensus 484 ~~~~l------------~~~~~~---~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~ 532 (670)
....+ ++..+. -.++..++.+ .+-++.+.+.++..+..+.........
T Consensus 680 ~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va 742 (1387)
T KOG1517|consen 680 QTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVA 742 (1387)
T ss_pred hhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence 22221 122222 2566677888 999999999999999876655544433
No 63
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.85 E-value=7.1e-08 Score=95.77 Aligned_cols=228 Identities=14% Similarity=0.168 Sum_probs=160.3
Q ss_pred hHHHHHHhccc-CChhHHHHHHHHHHhhhcCCCCCChhhhh-------hhHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 037562 368 LIPLLAELNEN-ANLSMLRTATWTLFNFCRGKPQPPFNQVR-------PALPVLAQLIRSNDEEVLTDACWALSYLSDGT 439 (670)
Q Consensus 368 i~~Ll~~l~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-------~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~ 439 (670)
...++.++... .+.++.++++..+..+....+........ .....+++++.++|..++..++..+..+....
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~ 136 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG 136 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence 45566666555 78899999999999999887754433331 24567778899999999999999999998766
Q ss_pred hHHHHHHHHcCCHHHHHHhcCC----CCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhh------ccCCchhH
Q 037562 440 NDKVQAVIEAGVYPRLVELLGH----SSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDML------VHNHEESI 509 (670)
Q Consensus 440 ~~~~~~~~~~~~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l------~~~~~~~v 509 (670)
+....... .+.++.++..+.+ ++.+++..|+.++.++.. .+..+..+.+.++++.+..++ .+..+..+
T Consensus 137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql 214 (312)
T PF03224_consen 137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL 214 (312)
T ss_dssp TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence 54444322 3455666666554 455678899999999986 556677788899999999999 44447788
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh-cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhc-
Q 037562 510 KKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ-NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLL- 587 (670)
Q Consensus 510 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll- 587 (670)
+.+++.++.-++. +++....+.+.++++.|.++++ ...++|.+-+..++.|+...........++..|+++.+..+.
T Consensus 215 ~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 215 QYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 8999999999965 4777888888889999999998 567899999999999999986555788888888777777766
Q ss_pred -cCCChHHHHHH
Q 037562 588 -LCADPKIVTVC 598 (670)
Q Consensus 588 -~~~~~~v~~~a 598 (670)
+..|+++....
T Consensus 294 rk~~Dedl~edl 305 (312)
T PF03224_consen 294 RKWSDEDLTEDL 305 (312)
T ss_dssp S--SSHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 44678876553
No 64
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=2.6e-06 Score=88.69 Aligned_cols=323 Identities=15% Similarity=0.137 Sum_probs=193.9
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 037562 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVID 322 (670)
Q Consensus 243 l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 322 (670)
+.+-|++.+.-++-.|+.+++++++.+ -.+ ++.|.+.+++++.+ +.+|..|+.|...+....|+..+.+
T Consensus 112 lknDL~s~nq~vVglAL~alg~i~s~E---mar-----dlapeVe~Ll~~~~-~~irKKA~Lca~r~irK~P~l~e~f-- 180 (866)
T KOG1062|consen 112 LKNDLNSSNQYVVGLALCALGNICSPE---MAR-----DLAPEVERLLQHRD-PYIRKKAALCAVRFIRKVPDLVEHF-- 180 (866)
T ss_pred HHhhccCCCeeehHHHHHHhhccCCHH---HhH-----HhhHHHHHHHhCCC-HHHHHHHHHHHHHHHHcCchHHHHh--
Confidence 344455677778888888888886542 111 25677778888888 8999999988888887666655443
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc--------------cCChhHHHHHH
Q 037562 323 HGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE--------------NANLSMLRTAT 388 (670)
Q Consensus 323 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~--------------~~~~~~~~~a~ 388 (670)
++..-.+|.+.+..|...++..+..+|..+++.-..+.+ .++.++..|++ -.+|-++..++
T Consensus 181 ---~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iL 255 (866)
T KOG1062|consen 181 ---VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRIL 255 (866)
T ss_pred ---hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHH
Confidence 567777887777778777888888888766654333333 45555555522 13445555666
Q ss_pred HHHHhhhcCCCCCChhhhhhhHHHHHHhhccC---ChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCcc
Q 037562 389 WTLFNFCRGKPQPPFNQVRPALPVLAQLIRSN---DEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSS 465 (670)
Q Consensus 389 ~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~ 465 (670)
..|.-+..+++.. ...+..++..+..--.++ -..+...+..++..+-.+..-+ . -++..|-++|.+.+..
T Consensus 256 rlLriLGq~d~da-Sd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~Lr-v-----lainiLgkFL~n~d~N 328 (866)
T KOG1062|consen 256 RLLRILGQNDADA-SDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLR-V-----LAINILGKFLLNRDNN 328 (866)
T ss_pred HHHHHhcCCCccH-HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHH-H-----HHHHHHHHHhcCCccc
Confidence 6666665554221 111122211111111111 1334444555554443322211 0 1345566666666666
Q ss_pred chhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh
Q 037562 466 VLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ 545 (670)
Q Consensus 466 v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~ 545 (670)
+|..|+..|......++...+. --..+++.|++. |..+|+.|......+... .++.. ++..|++.|.
T Consensus 329 irYvaLn~L~r~V~~d~~avqr-----Hr~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~~-----mv~eLl~fL~ 395 (866)
T KOG1062|consen 329 IRYVALNMLLRVVQQDPTAVQR-----HRSTILECLKDP-DVSIKRRALELSYALVNE--SNVRV-----MVKELLEFLE 395 (866)
T ss_pred eeeeehhhHHhhhcCCcHHHHH-----HHHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHHH
Confidence 7777777777666655544332 234578889999 999999999888888653 33333 3567888999
Q ss_pred cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHH
Q 037562 546 NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILK 607 (670)
Q Consensus 546 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~ 607 (670)
+.+++++...+.-+..++....|+.+=+ ++.+...++..-.-|+..+...+.+++.
T Consensus 396 ~~d~~~k~~~as~I~~laEkfaP~k~W~------idtml~Vl~~aG~~V~~dv~~nll~LIa 451 (866)
T KOG1062|consen 396 SSDEDFKADIASKIAELAEKFAPDKRWH------IDTMLKVLKTAGDFVNDDVVNNLLRLIA 451 (866)
T ss_pred hccHHHHHHHHHHHHHHHHhcCCcchhH------HHHHHHHHHhcccccchhhHHHHHHHHh
Confidence 8899999999999999988765544322 3444555544433334344444444443
No 65
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.84 E-value=7.6e-07 Score=91.35 Aligned_cols=385 Identities=15% Similarity=0.143 Sum_probs=232.1
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCC-HHHHHHHHHHHHHHcCCChhhH
Q 037562 239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDY-PQLQFKAAWALTNIASGTSENT 317 (670)
Q Consensus 239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~-~~v~~~a~~~L~~l~~~~~~~~ 317 (670)
.+..++.-++++.++.+..++....++...-......+-.+.-.+..++..++.++. ..|......++.+-... ..+
T Consensus 717 ~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~--r~k 794 (1172)
T KOG0213|consen 717 IVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGG--RVK 794 (1172)
T ss_pred HHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhh--ccc
Confidence 366777778888888887777777776554323333333333355555555554431 23444444444443221 111
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH--HHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhh
Q 037562 318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCR--DLVLSQGALIPLLAELNENANLSMLRTATWTLFNFC 395 (670)
Q Consensus 318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~--~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~ 395 (670)
..+ ..++..++..|+++++.+|++|+..++.++..-..+. +.+...|. .|...+ ....+++.-..+.++..++
T Consensus 795 pyl--pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl-geeypEvLgsILgAikaI~ 869 (1172)
T KOG0213|consen 795 PYL--PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL-GEEYPEVLGSILGAIKAIV 869 (1172)
T ss_pred cch--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc-CcccHHHHHHHHHHHHHHH
Confidence 111 2346677889999999999999999999873222111 12223332 245555 6677888887777776666
Q ss_pred cCC-CCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHH
Q 037562 396 RGK-PQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTI 474 (670)
Q Consensus 396 ~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L 474 (670)
... -.....-+.+++|.|..+|++....|+++++..++.++...++....--=..+-=-|+.+|.+.+..+|.+|...+
T Consensus 870 nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTf 949 (1172)
T KOG0213|consen 870 NVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTF 949 (1172)
T ss_pred HhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 543 1222333578999999999999999999999999999977665432110011222366677777888999999888
Q ss_pred HHhhcCCc--hhhHHHH----------------------h-CC---ChHHHHHhhccCCchhHHHHHHHHHHHhhcCC-H
Q 037562 475 RNIVKGDD--FQTQCII----------------------N-CG---ALPYFLDMLVHNHEESIKKEVSWIISNITCGN-R 525 (670)
Q Consensus 475 ~~l~~~~~--~~~~~l~----------------------~-~~---~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~-~ 525 (670)
+.++..-. +....++ + .| ++|.|+.=...+ +..|+.....+++.+...- .
T Consensus 950 G~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP-e~nVQnGVLkalsf~Feyige 1028 (1172)
T KOG0213|consen 950 GYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP-EANVQNGVLKALSFMFEYIGE 1028 (1172)
T ss_pred hHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc-hhHHHHhHHHHHHHHHHHHHH
Confidence 88875211 1111111 1 12 344444444445 6778888888887775421 1
Q ss_pred HHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhc-------cCCChHHHHHH
Q 037562 526 EQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLL-------LCADPKIVTVC 598 (670)
Q Consensus 526 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll-------~~~~~~v~~~a 598 (670)
....++. -+.|.|-+.+.+.|.--|..|+.++.+++.+.. -.|..+.++.++ -...|.+..+.
T Consensus 1029 mskdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~--------g~g~eda~iHLLN~iWpNIle~sPhviqa~ 1098 (1172)
T KOG0213|consen 1029 MSKDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP--------GTGCEDALIHLLNLIWPNILETSPHVIQAF 1098 (1172)
T ss_pred HhhhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC--------CcCcHHHHHHHHHHhhhhhcCCChHHHHHH
Confidence 1122222 367888888888999999999999999988531 123344444443 45677777777
Q ss_pred HHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562 599 LEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYW 661 (670)
Q Consensus 599 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~ 661 (670)
..++..+-..-. -.-.+..+.+=+-|+...|++.+=++.+.+|
T Consensus 1099 ~e~~eg~r~~Lg--------------------~~~~~~Y~~QGLFHParkVR~~yw~vyn~my 1141 (1172)
T KOG0213|consen 1099 DEAMEGLRVALG--------------------PQAMLKYCLQGLFHPARKVRKRYWTVYNSMY 1141 (1172)
T ss_pred HHHHHHHHHHhc--------------------hHHHHHHHHHhccCcHHHHHHHHHHHHHhHh
Confidence 777666432211 1111344455566777888877766666654
No 66
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.83 E-value=4.8e-07 Score=90.13 Aligned_cols=356 Identities=13% Similarity=0.097 Sum_probs=217.7
Q ss_pred HHHHHHHhcCCC-hHHHHHHHHHHHHHhcCCCCCcHHHHH-HcC-CHHHH-HHhhcCCCCHHHHHHHHHHHHHHcC----
Q 037562 240 LPAMVDGVWSDD-NSLQLEATTLFINLLSFDRSPPIDEVI-QSG-VVPRF-VEFLMRQDYPQLQFKAAWALTNIAS---- 311 (670)
Q Consensus 240 i~~l~~~l~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~g-~l~~L-~~ll~~~~~~~v~~~a~~~L~~l~~---- 311 (670)
...++.....+. ...+.+++.++..+.... .+ +.++ ..+ ++-.+ ...++.+....+|..|+.+|.+-..
T Consensus 135 m~~mv~nvg~eqp~~~k~~sl~~~gy~ces~--~P-e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~ 211 (858)
T COG5215 135 MEEMVRNVGDEQPVSGKCESLGICGYHCESE--AP-EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQG 211 (858)
T ss_pred HHHHHHhccccCchHhHHHHHHHHHHHhhcc--CH-HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443 478899999999987664 33 2233 222 22233 3344444447899999999987222
Q ss_pred --CChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHH
Q 037562 312 --GTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATW 389 (670)
Q Consensus 312 --~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~ 389 (670)
..+..|. -+++..++.-+.++.+++..|..+|..+..-.-..-+...+. ++-.+.....++++.++...+..
T Consensus 212 nf~~E~erN-----y~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~-aL~alt~~~mks~nd~va~qavE 285 (858)
T COG5215 212 NFCYEEERN-----YFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMEN-ALAALTGRFMKSQNDEVAIQAVE 285 (858)
T ss_pred hhcchhhhc-----hhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCcchHHHHHHHH
Confidence 0122222 234566677788999999999999999874322222222222 23333333347788888888888
Q ss_pred HHHhhhcCCCCCC-----------------hhhhhhhHHHHHHhhccC-------ChhHHHHHHHHHHHhccCChHHHHH
Q 037562 390 TLFNFCRGKPQPP-----------------FNQVRPALPVLAQLIRSN-------DEEVLTDACWALSYLSDGTNDKVQA 445 (670)
Q Consensus 390 ~L~~l~~~~~~~~-----------------~~~~~~~i~~L~~lL~~~-------~~~v~~~al~~L~~l~~~~~~~~~~ 445 (670)
..+.+|....... ......++|.|+++|... |..+...|..||.-.++...+ .
T Consensus 286 fWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd---~ 362 (858)
T COG5215 286 FWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD---K 362 (858)
T ss_pred HHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh---H
Confidence 8877776541111 011255889999999742 345666777777666543222 2
Q ss_pred HHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCH
Q 037562 446 VIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNR 525 (670)
Q Consensus 446 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~ 525 (670)
+++ .++..+-.-++++++.-|+.|..+++.+..+.......-+-...+|.+...+.+. .-.++..++|+++.++.+-+
T Consensus 363 i~~-pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad~va 440 (858)
T COG5215 363 IMR-PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIADHVA 440 (858)
T ss_pred hHH-HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHHHHHH
Confidence 333 2555566667889999999999999999987665544444456888888888877 88899999999999976433
Q ss_pred HHHHHHHhcCChHHHHH-Hhh--cCChhHHHHHHHHHHHhcCCCCHHHH--HHHHHc---CCcHHHHhhc--cCCChHHH
Q 037562 526 EQIQAVIDSGLIGPIVN-LLQ--NTEFDTKKEAAWAISNATKFGTHEQI--KHLVRE---GCVKPLCDLL--LCADPKIV 595 (670)
Q Consensus 526 ~~~~~l~~~~~i~~L~~-ll~--~~~~~v~~~a~~aL~~l~~~~~~~~~--~~l~~~---~~i~~L~~ll--~~~~~~v~ 595 (670)
..+. ..+-++..+. .+. .+.+.+..+++|+..|+..+-.+... ..++-. .++..|+.-- ...+...|
T Consensus 441 ~~i~---p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R 517 (858)
T COG5215 441 MIIS---PCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLR 517 (858)
T ss_pred HhcC---ccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHH
Confidence 3221 1222333332 222 34678889999999999875322110 111111 1222222221 23455788
Q ss_pred HHHHHHHHHHHHhhhhh
Q 037562 596 TVCLEGLENILKVGVAE 612 (670)
Q Consensus 596 ~~a~~~l~~l~~~~~~~ 612 (670)
..+..+|+.++...+..
T Consensus 518 ~s~fsaLgtli~~~~d~ 534 (858)
T COG5215 518 VSLFSALGTLILICPDA 534 (858)
T ss_pred HHHHHHHHHHHhhcchh
Confidence 88999999988766543
No 67
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.79 E-value=1.2e-06 Score=87.47 Aligned_cols=394 Identities=16% Similarity=0.128 Sum_probs=238.1
Q ss_pred hhhhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcC--CChHHHHHHHHHHHHHhcCCCCCcHHHHHH
Q 037562 202 NTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWS--DDNSLQLEATTLFINLLSFDRSPPIDEVIQ 279 (670)
Q Consensus 202 ~~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 279 (670)
+.+.+.-.+..+...+.+..+..-... ....+-.++..-.+ .+..++..|+.+|.+-...-+.....+--.
T Consensus 147 p~~~k~~sl~~~gy~ces~~Pe~li~~-------sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~er 219 (858)
T COG5215 147 PVSGKCESLGICGYHCESEAPEDLIQM-------SNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEER 219 (858)
T ss_pred chHhHHHHHHHHHHHhhccCHHHHHHH-------hhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhh
Confidence 556666667777777776665322222 22334455554443 345788999999987322210000111111
Q ss_pred cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q 037562 280 SGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCR 359 (670)
Q Consensus 280 ~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 359 (670)
+-++...++.-+.++ .+++..|..||..+..-..+..+.+.+.-......+.++++++++..+|+...+.+|...-+..
T Consensus 220 Ny~mqvvceatq~~d-~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~ 298 (858)
T COG5215 220 NYFMQVVCEATQGND-EELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGE 298 (858)
T ss_pred chhheeeehhccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhH
Confidence 224556677777778 8999999999999988677777777776666667778899999999999999988885321111
Q ss_pred HHH----------------HhcCChHHHHHHhcc-cC-----ChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhh
Q 037562 360 DLV----------------LSQGALIPLLAELNE-NA-----NLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLI 417 (670)
Q Consensus 360 ~~i----------------~~~~~i~~Ll~~l~~-~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL 417 (670)
-.. .-.+++|.++++|.+ +. +..+-..|..||.-++....+ .+..+++..+-+-+
T Consensus 299 ~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd---~i~~pVl~FvEqni 375 (858)
T COG5215 299 MEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD---KIMRPVLGFVEQNI 375 (858)
T ss_pred HHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh---HhHHHHHHHHHHhc
Confidence 000 012368889999854 22 224555666666655544321 23344566666777
Q ss_pred ccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHH
Q 037562 418 RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYF 497 (670)
Q Consensus 418 ~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L 497 (670)
++++..-++.+..+++.+..++......-+-...++.+...+.++.--++..++|+++.++.+-+.... ..+-++..
T Consensus 376 ~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~---p~~Hl~~~ 452 (858)
T COG5215 376 RSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIIS---PCGHLVLE 452 (858)
T ss_pred cCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcC---ccccccHH
Confidence 888888999999999999987665555444457889999999888888999999999999875433211 22323222
Q ss_pred HHhhc---cCCchhHHHHHHHHHHHhhcCCHHHHH---HHHh---cCChHHHHHHhh--cCChhHHHHHHHHHHHhcCCC
Q 037562 498 LDMLV---HNHEESIKKEVSWIISNITCGNREQIQ---AVID---SGLIGPIVNLLQ--NTEFDTKKEAAWAISNATKFG 566 (670)
Q Consensus 498 ~~~l~---~~~~~~v~~~a~~~L~~l~~~~~~~~~---~l~~---~~~i~~L~~ll~--~~~~~v~~~a~~aL~~l~~~~ 566 (670)
++... .+ .+.+....+|..-|++.+-++... .++. ..++..|+...+ ..+...|..+..+|+.+...+
T Consensus 453 vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~ 531 (858)
T COG5215 453 VSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILIC 531 (858)
T ss_pred HHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhc
Confidence 22211 12 467778899999999874333221 1111 113333333322 345788888889999888764
Q ss_pred CHHHHHHHHH---------cCCcHHHHhhccCCCh----HHHHHHHHHHHHHHHhhh
Q 037562 567 THEQIKHLVR---------EGCVKPLCDLLLCADP----KIVTVCLEGLENILKVGV 610 (670)
Q Consensus 567 ~~~~~~~l~~---------~~~i~~L~~ll~~~~~----~v~~~a~~~l~~l~~~~~ 610 (670)
.......+.. ...+..+-+.+..+|. +++.+.+..|..+++...
T Consensus 532 ~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~ 588 (858)
T COG5215 532 PDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRR 588 (858)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3332222111 1123334444444333 455566666666665433
No 68
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.78 E-value=7.3e-06 Score=84.41 Aligned_cols=387 Identities=15% Similarity=0.112 Sum_probs=228.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcC-------CCCHHHHHHHHHHHHHHcCC
Q 037562 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMR-------QDYPQLQFKAAWALTNIASG 312 (670)
Q Consensus 240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~-------~~~~~v~~~a~~~L~~l~~~ 312 (670)
+-.++...+++|.+.+.-.+.++.+++... ......+...++|.+...... .+...+...+..+-..+..
T Consensus 638 mlil~rEf~sPDeemkkivLKVv~qcc~t~--Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~- 714 (1172)
T KOG0213|consen 638 MLILIREFGSPDEEMKKIVLKVVKQCCATD--GVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGS- 714 (1172)
T ss_pred HHHHHHhhCCChHHHHHHHHHHHHHHhccc--CCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCc-
Confidence 344555556778888888888888876653 333445555667766654332 2222333333333333322
Q ss_pred ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc--hhHHHHHhcCChHHHHHHhcccC-ChhHHHHHHH
Q 037562 313 TSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSP--RCRDLVLSQGALIPLLAELNENA-NLSMLRTATW 389 (670)
Q Consensus 313 ~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~i~~~~~i~~Ll~~l~~~~-~~~~~~~a~~ 389 (670)
...+..++.-++++++..|..++.+..++...-+ ..-+.. +...+..++..++..+ +..+.-....
T Consensus 715 ----------~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderl-eE~lidgil~Afqeqtt~d~vml~gfg 783 (1172)
T KOG0213|consen 715 ----------DPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERL-EERLIDGILYAFQEQTTEDSVMLLGFG 783 (1172)
T ss_pred ----------hHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHH-HHHHHHHHHHHHHhcccchhhhhhhHH
Confidence 2356677777888888888877777766653221 111111 1123455555553332 2333334444
Q ss_pred HHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHH--HHHHHHcCCHHHHHHhcCCCCccch
Q 037562 390 TLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDK--VQAVIEAGVYPRLVELLGHSSSSVL 467 (670)
Q Consensus 390 ~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~--~~~~~~~~~i~~L~~lL~~~~~~v~ 467 (670)
++.+-... ........++..++..|++..+.++..++..++.++.--... .+.+...| -.|...|....+++.
T Consensus 784 ~V~~~lg~---r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEvL 858 (1172)
T KOG0213|consen 784 TVVNALGG---RVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEVL 858 (1172)
T ss_pred HHHHHHhh---ccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHHH
Confidence 44443322 222233567778889999999999999999999887321111 11122223 356777888888887
Q ss_pred hHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcC
Q 037562 468 TPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNT 547 (670)
Q Consensus 468 ~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~ 547 (670)
-..+.++..+...-.-....---.+++|.|..+|++. ...|+......++.++...++.+..=-=..+--.|+++|++.
T Consensus 859 gsILgAikaI~nvigm~km~pPi~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkah 937 (1172)
T KOG0213|consen 859 GSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAH 937 (1172)
T ss_pred HHHHHHHHHHHHhccccccCCChhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHH
Confidence 7766666666532110000001237899999999999 999999999999999875544211000011334577788888
Q ss_pred ChhHHHHHHHHHHHhcCCCCHHHH-HHHH----------------------H----cCCcHHHHhhccCCChHHHHHHHH
Q 037562 548 EFDTKKEAAWAISNATKFGTHEQI-KHLV----------------------R----EGCVKPLCDLLLCADPKIVTVCLE 600 (670)
Q Consensus 548 ~~~v~~~a~~aL~~l~~~~~~~~~-~~l~----------------------~----~~~i~~L~~ll~~~~~~v~~~a~~ 600 (670)
+.++|++|...++.++....|... ..++ + -.++|.|..-...++..|+.-+++
T Consensus 938 kK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLk 1017 (1172)
T KOG0213|consen 938 KKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLK 1017 (1172)
T ss_pred HHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHH
Confidence 899999999999998875433221 1111 1 113566666667788899999999
Q ss_pred HHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 037562 601 GLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETY 660 (670)
Q Consensus 601 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~ 660 (670)
++..+|++-.+..+. |.-.+ .+.|++-+.+.+.-=++.|..++..+
T Consensus 1018 alsf~Feyigemskd---------Yiyav-----~PlleDAlmDrD~vhRqta~~~I~Hl 1063 (1172)
T KOG0213|consen 1018 ALSFMFEYIGEMSKD---------YIYAV-----TPLLEDALMDRDLVHRQTAMNVIKHL 1063 (1172)
T ss_pred HHHHHHHHHHHHhhh---------HHHHh-----hHHHHHhhccccHHHHHHHHHHHHHH
Confidence 999999886655432 22111 34455555556566566666666544
No 69
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.77 E-value=4.1e-07 Score=88.39 Aligned_cols=273 Identities=16% Similarity=0.143 Sum_probs=192.2
Q ss_pred HHHHHcCCHHHHHHhhcCCCC-HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhh
Q 037562 275 DEVIQSGVVPRFVEFLMRQDY-PQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSVDVRKQTVWALGNVA 352 (670)
Q Consensus 275 ~~~~~~g~l~~L~~ll~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~ 352 (670)
+.+...|++..|++++..++. ..++..|++.|..+.. .++++.++..| +..++.+.+. +.++.+...+..|.++.
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 345556889999999998862 3579999999999875 68888888877 6666666554 66888999999999999
Q ss_pred CCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCC--CCChhhhhhhHHHHHHhhccCChhHHHHHHH
Q 037562 353 GDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKP--QPPFNQVRPALPVLAQLIRSNDEEVLTDACW 430 (670)
Q Consensus 353 ~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~ 430 (670)
.++.+....++..|++..++-.. ...++.+.++++.+|.|+.-+.. ....++...+-.-|..+-.+.|+-.+..|+.
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~ACl 329 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACL 329 (832)
T ss_pred hhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHH
Confidence 99888888888999999988887 66779999999999999987762 2233333455555666666778889999999
Q ss_pred HHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHH
Q 037562 431 ALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIK 510 (670)
Q Consensus 431 ~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~ 510 (670)
+++.++.+.+ .-..+..+|.+..+-.++.+-++.- ++.+..+..+ -.....++.|+.+|++. .-+.+
T Consensus 330 AV~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP~~----------FARD~hd~aQ-G~~~d~LqRLvPlLdS~-R~EAq 396 (832)
T KOG3678|consen 330 AVAVLATNKE-VEREVRKSGTLALVEPLVASLDPGR----------FARDAHDYAQ-GRGPDDLQRLVPLLDSN-RLEAQ 396 (832)
T ss_pred HHhhhhhhhh-hhHHHhhccchhhhhhhhhccCcch----------hhhhhhhhhc-cCChHHHHHhhhhhhcc-hhhhh
Confidence 9999987644 3344667787777777777766521 2221111111 01123577888899877 66666
Q ss_pred HHHHHHHHHhhc-C-CHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcC
Q 037562 511 KEVSWIISNITC-G-NREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATK 564 (670)
Q Consensus 511 ~~a~~~L~~l~~-~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 564 (670)
..+++-++.=+. . .....+.+.+-|.|..|.++..+.|.--..-|..||.-+..
T Consensus 397 ~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 397 CIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred hhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 655555444332 1 11223345577889999998887776666666667666654
No 70
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=5.6e-07 Score=93.62 Aligned_cols=303 Identities=16% Similarity=0.164 Sum_probs=196.0
Q ss_pred hccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 037562 237 LEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN 316 (670)
Q Consensus 237 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~ 316 (670)
..++..+++-..++++.++..|++.+..+-- ..+.+. ...++.+.+++.+ +.+|..|+-+..++-. ..
T Consensus 85 ~~avnt~~kD~~d~np~iR~lAlrtm~~l~v-------~~i~ey-~~~Pl~~~l~d~~-~yvRktaa~~vakl~~---~~ 152 (734)
T KOG1061|consen 85 ILAVNTFLKDCEDPNPLIRALALRTMGCLRV-------DKITEY-LCDPLLKCLKDDD-PYVRKTAAVCVAKLFD---ID 152 (734)
T ss_pred HhhhhhhhccCCCCCHHHHHHHhhceeeEee-------hHHHHH-HHHHHHHhccCCC-hhHHHHHHHHHHHhhc---CC
Confidence 4567777777778888888888777754411 122222 5678889999999 8999999999999866 45
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhc
Q 037562 317 TKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCR 396 (670)
Q Consensus 317 ~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~ 396 (670)
.+...+.|.++.|..++.++++.+..+|+.+|..+....+..-...+....+..++..+ +.-....-+.++-.++.
T Consensus 153 ~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al----~ec~EW~qi~IL~~l~~ 228 (734)
T KOG1061|consen 153 PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEAL----NECTEWGQIFILDCLAE 228 (734)
T ss_pred hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHH----HHhhhhhHHHHHHHHHh
Confidence 56677899999999999999999999999999999865543111111111223333333 22222344455666666
Q ss_pred CCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHH
Q 037562 397 GKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN 476 (670)
Q Consensus 397 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 476 (670)
..|... .-...++..+...+++.++.+...+...+.++......... .+-..+-+.++.++.+.. +++..|++-+.-
T Consensus 229 y~p~d~-~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~-~~~~K~~~pl~tlls~~~-e~qyvaLrNi~l 305 (734)
T KOG1061|consen 229 YVPKDS-REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNE-LLFKKVAPPLVTLLSSES-EIQYVALRNINL 305 (734)
T ss_pred cCCCCc-hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHH-HHHHHhcccceeeecccc-hhhHHHHhhHHH
Confidence 655444 34456777888888888988888888888887755444222 222356677777777766 677767666665
Q ss_pred hhcCCchhhHH-------------------------HH-hCCChHHHHHhh---ccCCchhHHHHHHHHHHHhhcCCHHH
Q 037562 477 IVKGDDFQTQC-------------------------II-NCGALPYFLDML---VHNHEESIKKEVSWIISNITCGNREQ 527 (670)
Q Consensus 477 l~~~~~~~~~~-------------------------l~-~~~~~~~L~~~l---~~~~~~~v~~~a~~~L~~l~~~~~~~ 527 (670)
+....+..... +. ++++-+.+-++. ..- +.+..++|.+++++++..-++.
T Consensus 306 il~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatev-D~~fvrkaIraig~~aik~e~~ 384 (734)
T KOG1061|consen 306 ILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEV-DVDFVRKAVRAIGRLAIKAEQS 384 (734)
T ss_pred HHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhh-CHHHHHHHHHHhhhhhhhhhhh
Confidence 55433321110 00 111112222222 233 7778889999999998743331
Q ss_pred HHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCC
Q 037562 528 IQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKF 565 (670)
Q Consensus 528 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 565 (670)
++++..|+++++.+-..+..+++..+..+...
T Consensus 385 ------~~cv~~lLell~~~~~yvvqE~~vvi~dilRk 416 (734)
T KOG1061|consen 385 ------NDCVSILLELLETKVDYVVQEAIVVIRDILRK 416 (734)
T ss_pred ------hhhHHHHHHHHhhcccceeeehhHHHHhhhhc
Confidence 56778888888866666777777777777664
No 71
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.74 E-value=3.7e-07 Score=98.82 Aligned_cols=554 Identities=17% Similarity=0.135 Sum_probs=264.3
Q ss_pred CCcEEEEecCCCCccccCC---------------Cccccccceeeecccccccccccchhhhcccccceeccccccccce
Q 037562 48 NLVILCVHCCDHLINLVPS---------------STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITE 112 (670)
Q Consensus 48 ~L~~L~i~~c~~l~~~~~~---------------~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~ 112 (670)
.|++|.++++...+..... ..+-.+|++|+|.|-..+..-++......||+|++|.|.+-.-...
T Consensus 84 ~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~ 163 (699)
T KOG3665|consen 84 DLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND 163 (699)
T ss_pred cccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch
Confidence 4888888877655443221 1124689999999854433222222244699999999987432111
Q ss_pred ecccccccccccccccccccccccccc--ccccccccCCcccCCCCccEEeEecCCCcccccc--CCcCCCCccceeeee
Q 037562 113 IVLVDDVVAQDEVITFRELKELNLLQM--QNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSG--GELSTPNLHKVQLSR 188 (670)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~--~~~~~~~L~~l~i~~ 188 (670)
-+ ..--..||+|..|+|+++ .+|.. ...+++|+.|.+++-+= +..+. ....+.+|+.|+||+
T Consensus 164 dF-------~~lc~sFpNL~sLDIS~TnI~nl~G------IS~LknLq~L~mrnLe~-e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 164 DF-------SQLCASFPNLRSLDISGTNISNLSG------ISRLKNLQVLSMRNLEF-ESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred hH-------HHHhhccCccceeecCCCCccCcHH------HhccccHHHHhccCCCC-CchhhHHHHhcccCCCeeeccc
Confidence 00 111246999999999975 34422 34578888888876542 22221 234578899998875
Q ss_pred ccCCccceeeccchhhhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcCCChHHHHHHHHH-HHHHhc
Q 037562 189 WDGEEHWIWVHDLNTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTL-FINLLS 267 (670)
Q Consensus 189 ~~~~~~~~~~~~~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~-L~~l~~ 267 (670)
..... +..-..+.+-.+.. + +..++-+.. +...-..+++.+....+.++.-++.. ...-+.
T Consensus 230 ~~~~~------~~~ii~qYlec~~~---L----peLrfLDcS-----gTdi~~~~le~ll~sH~~L~~i~~~~~~~~~~~ 291 (699)
T KOG3665|consen 230 DKNND------DTKIIEQYLECGMV---L----PELRFLDCS-----GTDINEEILEELLNSHPNLQQIAALDCLALSAV 291 (699)
T ss_pred ccccc------chHHHHHHHHhccc---C----ccccEEecC-----CcchhHHHHHHHHHhCccHhhhhhhhhhccccc
Confidence 44332 22111111111111 1 111222111 11112234444433444444333332 111111
Q ss_pred CCCCCcHHHHHH----cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHH
Q 037562 268 FDRSPPIDEVIQ----SGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQ 343 (670)
Q Consensus 268 ~~~~~~~~~~~~----~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~ 343 (670)
. .... .+.. ...+..+..+..-.. +.....+...+..+.... +..+...-...+..++..++......+..
T Consensus 292 ~--~~~i-~~ln~at~~s~i~~L~~~~~l~r-~~~v~~cl~~l~~~~~~~-~~~~~~~~~~~l~~i~~sm~~~~s~~~i~ 366 (699)
T KOG3665|consen 292 S--STEI-RVLNTATLDSSIQALTYYLNLKR-PSEVSRCLNELLDLLKSL-DSTREYDISECLKLIINSMNTFSSSNQIQ 366 (699)
T ss_pred c--ccCc-eeeeecchhHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHh-hhhhhhhHHHHHHHHHHHHHhcCChhhhh
Confidence 1 1011 1112 223444444444444 445555555555555422 22222222356667777766533355556
Q ss_pred HHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCCh-
Q 037562 344 TVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDE- 422 (670)
Q Consensus 344 a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~- 422 (670)
...++..++.....--......-.+..+++.... .+.+.......+++..... .......-..+...+.
T Consensus 367 ~~~CL~~i~~~~~~~l~~~~~~~~l~~LLn~v~~--~~~~~~~~~~~~~~~i~~~--------~~~~~~~~~~~~~~~~~ 436 (699)
T KOG3665|consen 367 GSACLIHIVKHTKQRLSPLLVSLLLKVLLNLVEK--LDTLDSNDELTLCNSIILL--------LSLLVSRRKLLSVLDHH 436 (699)
T ss_pred HHHHHHHHHHhhhhccChHHHHHHHHHHHHhhhc--ccccccchhHHHHHHHHHH--------HHHHHHHHHHhhccchh
Confidence 6888888875432100001111123333333321 1111111111111111000 0000000001111121
Q ss_pred ---hHHHHHHHHHHHhccCChHHHHH--HHHcCCHHHHHHh--cCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChH
Q 037562 423 ---EVLTDACWALSYLSDGTNDKVQA--VIEAGVYPRLVEL--LGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALP 495 (670)
Q Consensus 423 ---~v~~~al~~L~~l~~~~~~~~~~--~~~~~~i~~L~~l--L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~ 495 (670)
.+...+..++.+........... .-..+.+..+... +....+-.-..-..+++++...++..++.+++.++..
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~t~~~~~~C~~~l~~~g~~ 516 (699)
T KOG3665|consen 437 EQDNIQQRLTVCLSISTACQVVSITKVNVGELGIVLTLLLRIKLRKIYWCDDVLEFTALWNITDENPETCKEFLDNGGMK 516 (699)
T ss_pred hhhhhhHHHHHhhcchhHHHHHHHHHhccchhHHHHHHHHHHHhhccchhhHHHHHHHHHhhhcCCHHHHHHHHhcccHH
Confidence 22222222222221110000010 0111222221111 1122222111112288899999999999999999999
Q ss_pred HHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCC-hHHHHHHhhcCC-hhHHHHHHHHHHHhcCCCCH-----
Q 037562 496 YFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGL-IGPIVNLLQNTE-FDTKKEAAWAISNATKFGTH----- 568 (670)
Q Consensus 496 ~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~-i~~L~~ll~~~~-~~v~~~a~~aL~~l~~~~~~----- 568 (670)
.+...++.-...+++..+...++|++...+..-.......+ ...+-.++..-+ .+.-..|+..|+.+...+++
T Consensus 517 ~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~ersY~~~siLa~ll~~~~~~~~~~ 596 (699)
T KOG3665|consen 517 LLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIERSYNAASILALLLSDSEKTTECV 596 (699)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHhCCCcCcccc
Confidence 99999987657789999999999998732211111111001 112222333333 37777888888888775321
Q ss_pred ---HHHHHHHH--------------cCCcHH-HHhhc-cCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHH
Q 037562 569 ---EQIKHLVR--------------EGCVKP-LCDLL-LCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLV 629 (670)
Q Consensus 569 ---~~~~~l~~--------------~~~i~~-L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 629 (670)
.....+.+ ...+.+ +..++ .+..+..+.+|++++.+++..... +++.+
T Consensus 597 ~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~-------------~~~~~ 663 (699)
T KOG3665|consen 597 FRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKE-------------YCKLV 663 (699)
T ss_pred chHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHHHHcChh-------------hhhhh
Confidence 00111111 112333 44444 345667788999999988865433 46678
Q ss_pred HHhchHHHHHHhh-cCCCHHHHHHHHHHHHHhc
Q 037562 630 EEAEGLEKIENLQ-SHDDNGISEKAVEILETYW 661 (670)
Q Consensus 630 ~~~g~~~~l~~L~-~~~~~~v~~~a~~~l~~~~ 661 (670)
.+.|++..+..+. .....+++..+..+++...
T Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 696 (699)
T KOG3665|consen 664 RESNGFELIENIRVLSEVVDVKEEAVLVIESCE 696 (699)
T ss_pred HhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence 8899999887763 2236667777777776554
No 72
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.5e-05 Score=72.90 Aligned_cols=342 Identities=13% Similarity=0.121 Sum_probs=231.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCc---HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 037562 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPP---IDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN 316 (670)
Q Consensus 240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~ 316 (670)
.|.+-..+..++..++.-|+..+..+..+.+... +..++.+|+++.++..+-.++ .+|..+|...+..++. .+..
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpaa 161 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPAA 161 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHHH
Confidence 5666677788889999999999998887642222 334567899999999999988 7999999999999998 7888
Q ss_pred HHHHHhCCChHHHH--HhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhh
Q 037562 317 TKVVIDHGAVPIFV--KLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNF 394 (670)
Q Consensus 317 ~~~i~~~~~i~~L~--~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l 394 (670)
...+.+.+....+- .+...-+.-.|......+..+.+-++........+|.+..|..-+....|.-++.++......+
T Consensus 162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL 241 (524)
T KOG4413|consen 162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL 241 (524)
T ss_pred HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence 88888877765543 2333456677778888888998888888888888998888888886667878888888888889
Q ss_pred hcCCCCCChhhhhhhHHHHHHhhccC--ChhHHHHHHHHHHHhccCChH---HHHHHHHc--CCHHHHHHhcCCCCccch
Q 037562 395 CRGKPQPPFNQVRPALPVLAQLIRSN--DEEVLTDACWALSYLSDGTND---KVQAVIEA--GVYPRLVELLGHSSSSVL 467 (670)
Q Consensus 395 ~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~al~~L~~l~~~~~~---~~~~~~~~--~~i~~L~~lL~~~~~~v~ 467 (670)
........+....|.++.+..++... ++--.-.++...+.+-..... .-+.+.+. -++.....++...+++.+
T Consensus 242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdai 321 (524)
T KOG4413|consen 242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAI 321 (524)
T ss_pred HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHH
Confidence 88776777777789999988888743 444444344444443321100 00111111 234445566777899999
Q ss_pred hHHHHHHHHhhcCCchhhHHHHhCCC--hHH-HHHhhccCCchhHHHHHHHHHHHhhcC---CHHH---------HHHH-
Q 037562 468 TPALRTIRNIVKGDDFQTQCIINCGA--LPY-FLDMLVHNHEESIKKEVSWIISNITCG---NREQ---------IQAV- 531 (670)
Q Consensus 468 ~~a~~~L~~l~~~~~~~~~~l~~~~~--~~~-L~~~l~~~~~~~v~~~a~~~L~~l~~~---~~~~---------~~~l- 531 (670)
..|+.+++.+..+. +..+.+...|- .+. +......+ ...-+..+..++.+++.. .+++ ...+
T Consensus 322 eaAiDalGilGSnt-eGadlllkTgppaaehllarafdqn-ahakqeaaihaLaaIagelrlkpeqitDgkaeerlrcli 399 (524)
T KOG4413|consen 322 EAAIDALGILGSNT-EGADLLLKTGPPAAEHLLARAFDQN-AHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLI 399 (524)
T ss_pred HHHHHHHHhccCCc-chhHHHhccCChHHHHHHHHHhccc-ccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHH
Confidence 99999999997744 44554444432 222 33333333 334566778888888751 1111 1111
Q ss_pred Hh-------cCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhh
Q 037562 532 ID-------SGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDL 586 (670)
Q Consensus 532 ~~-------~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~l 586 (670)
.+ -.-...+..+++.+.++++..+..++..++.. .=.....+...+.++...+.
T Consensus 400 fdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaq-PWalkeifakeefieiVtDa 460 (524)
T KOG4413|consen 400 FDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQ-PWALKEIFAKEEFIEIVTDA 460 (524)
T ss_pred HHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcC-cHHHHHHhcCccceeeeccc
Confidence 11 12355566677788899999999999999874 22333344455555555443
No 73
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=9.6e-06 Score=84.27 Aligned_cols=329 Identities=17% Similarity=0.140 Sum_probs=202.9
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562 239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK 318 (670)
Q Consensus 239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 318 (670)
.|..+-+.|+++++.++..|++++..+- -.. +..=++-.+-+...+.. +.||..|+.++-.+-.-+++...
T Consensus 109 SIntfQk~L~DpN~LiRasALRvlSsIR----vp~----IaPI~llAIk~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~ 179 (968)
T KOG1060|consen 109 SINTFQKALKDPNQLIRASALRVLSSIR----VPM----IAPIMLLAIKKAVTDPS-PYVRKTAAHAIPKLYSLDPEQKD 179 (968)
T ss_pred eHHHHHhhhcCCcHHHHHHHHHHHHhcc----hhh----HHHHHHHHHHHHhcCCc-HHHHHHHHHhhHHHhcCChhhHH
Confidence 3677888899999999988888886551 111 11112233345556777 89999999999999887777776
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC
Q 037562 319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK 398 (670)
Q Consensus 319 ~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~ 398 (670)
.+ +..+-.+|.+.++.|.-.|+.++-.+|-+. -+.+- +-...+.+++ .+-+..-+..+...|...++..
T Consensus 180 qL-----~e~I~~LLaD~splVvgsAv~AF~evCPer---ldLIH--knyrklC~ll-~dvdeWgQvvlI~mL~RYAR~~ 248 (968)
T KOG1060|consen 180 QL-----EEVIKKLLADRSPLVVGSAVMAFEEVCPER---LDLIH--KNYRKLCRLL-PDVDEWGQVVLINMLTRYARHQ 248 (968)
T ss_pred HH-----HHHHHHHhcCCCCcchhHHHHHHHHhchhH---HHHhh--HHHHHHHhhc-cchhhhhHHHHHHHHHHHHHhc
Confidence 54 456667888999999999999999988332 22221 2355666666 4444444445555555555443
Q ss_pred -CCC------------------------Ch----hhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHc
Q 037562 399 -PQP------------------------PF----NQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEA 449 (670)
Q Consensus 399 -~~~------------------------~~----~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~ 449 (670)
+.. .. .-..-.++..-.+|.+.++.|..+++.+++.++... ...
T Consensus 249 l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~--~~~----- 321 (968)
T KOG1060|consen 249 LPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN--QVT----- 321 (968)
T ss_pred CCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH--HHH-----
Confidence 111 00 001234455567888899999999999999998542 222
Q ss_pred CCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHH----------------H---------Hh-CC---ChHHHHHh
Q 037562 450 GVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQC----------------I---------IN-CG---ALPYFLDM 500 (670)
Q Consensus 450 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~----------------l---------~~-~~---~~~~L~~~ 500 (670)
+++..|+.+|.+.. .++...+..|..++...+..... + ++ .+ +++-+...
T Consensus 322 ~i~kaLvrLLrs~~-~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~Y 400 (968)
T KOG1060|consen 322 KIAKALVRLLRSNR-EVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTY 400 (968)
T ss_pred HHHHHHHHHHhcCC-cchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHH
Confidence 45677888776543 46666666666666433221111 0 11 11 22233344
Q ss_pred hccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCc
Q 037562 501 LVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCV 580 (670)
Q Consensus 501 l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i 580 (670)
+++. +..+...|..+++.++..... +...++.-|+.++.+.+..|..+++..|..+......++.+ ++
T Consensus 401 I~s~-d~~faa~aV~AiGrCA~~~~s-----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~------ii 468 (968)
T KOG1060|consen 401 IKSS-DRSFAAAAVKAIGRCASRIGS-----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLE------IL 468 (968)
T ss_pred HhcC-chhHHHHHHHHHHHHHHhhCc-----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHH------HH
Confidence 4555 556777777788877653322 23346778899999889999999999999998873333322 34
Q ss_pred HHHHhhccCC-ChHHHHHHHHHHHHHHH
Q 037562 581 KPLCDLLLCA-DPKIVTVCLEGLENILK 607 (670)
Q Consensus 581 ~~L~~ll~~~-~~~v~~~a~~~l~~l~~ 607 (670)
..|.+++++- -+.-|..++|.++..+.
T Consensus 469 ~~La~lldti~vp~ARA~IiWLige~~e 496 (968)
T KOG1060|consen 469 FQLARLLDTILVPAARAGIIWLIGEYCE 496 (968)
T ss_pred HHHHHHhhhhhhhhhhceeeeeehhhhh
Confidence 4566666432 23344444555555443
No 74
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=5.7e-07 Score=89.62 Aligned_cols=323 Identities=18% Similarity=0.097 Sum_probs=203.6
Q ss_pred HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q 037562 278 IQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPR 357 (670)
Q Consensus 278 ~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 357 (670)
...+++++++..+.+++ ..+|..|+..+.|++.. .+..-...-..+...+.++..+.+..++. ++..+-.+..+...
T Consensus 81 Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv-~k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 81 YLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKV-AKGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVT 157 (675)
T ss_pred HHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHH-hccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcc
Confidence 44568899999999999 79999999999999872 11111222234566777777777777764 34444444322111
Q ss_pred hHH-HHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhc
Q 037562 358 CRD-LVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLS 436 (670)
Q Consensus 358 ~~~-~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~ 436 (670)
-+. .+--.+.+|.+-..+ ...++..+.....-+..+-..++..-.......++.|..+|.++.++|+..+=.+++++.
T Consensus 158 e~~~tFsL~~~ipLL~eri-y~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL 236 (675)
T KOG0212|consen 158 ESASTFSLPEFIPLLRERI-YVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFL 236 (675)
T ss_pred ccccccCHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 111 111112334333444 456778888777666666555333333334778899999999999999977666665543
Q ss_pred c---CChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCch-hHHHH
Q 037562 437 D---GTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEE-SIKKE 512 (670)
Q Consensus 437 ~---~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~-~v~~~ 512 (670)
. +.+.. +--...++.++..++++++.++..|+.-|..+..-.+... ...-+|++..++..+.+. +. .++..
T Consensus 237 ~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~-e~~~i~~~ 311 (675)
T KOG0212|consen 237 AEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDT-EEMSIKEY 311 (675)
T ss_pred HHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCC-ccccHHHH
Confidence 1 11211 1122577889999999999999999888887776443322 234567778888888777 44 34444
Q ss_pred HHHHHHHhhc--CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCC
Q 037562 513 VSWIISNITC--GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCA 590 (670)
Q Consensus 513 a~~~L~~l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~ 590 (670)
|...-..+.. ..+...+.+--..+++.+...+.++..++|..+..-+..+-... +.+.- .........|..-+.+.
T Consensus 312 a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~-p~ql~-~h~~~if~tLL~tLsd~ 389 (675)
T KOG0212|consen 312 AQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKA-PGQLL-VHNDSIFLTLLKTLSDR 389 (675)
T ss_pred HHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhC-cchhh-hhccHHHHHHHHhhcCc
Confidence 4333222221 11111111111235778888888888999999998888887652 22211 12345788889999999
Q ss_pred ChHHHHHHHHHHHHHHHhhhh
Q 037562 591 DPKIVTVCLEGLENILKVGVA 611 (670)
Q Consensus 591 ~~~v~~~a~~~l~~l~~~~~~ 611 (670)
+.+|...++..+..++.....
T Consensus 390 sd~vvl~~L~lla~i~~s~~~ 410 (675)
T KOG0212|consen 390 SDEVVLLALSLLASICSSSNS 410 (675)
T ss_pred hhHHHHHHHHHHHHHhcCccc
Confidence 999999999999998876543
No 75
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.70 E-value=5.6e-06 Score=87.55 Aligned_cols=381 Identities=15% Similarity=0.157 Sum_probs=221.0
Q ss_pred HHHHHHhc--CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562 241 PAMVDGVW--SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK 318 (670)
Q Consensus 241 ~~l~~~l~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 318 (670)
...++.++ ..|.+++..|+.+...+.... .+... ..-...++.+++-+.+ +-.|..|+++++.++...-....
T Consensus 571 ~~tl~rL~a~d~DqeVkeraIscmgq~i~~f-gD~l~-~eL~~~L~il~eRl~n---EiTRl~AvkAlt~Ia~S~l~i~l 645 (1233)
T KOG1824|consen 571 DCTLQRLKATDSDQEVKERAISCMGQIIANF-GDFLG-NELPRTLPILLERLGN---EITRLTAVKALTLIAMSPLDIDL 645 (1233)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHH-hhhhh-hhhHHHHHHHHHHHhc---hhHHHHHHHHHHHHHhccceeeh
Confidence 34455554 467889999999988876653 11111 1112245666665554 56688999999999984322221
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch-hHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562 319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPR-CRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG 397 (670)
Q Consensus 319 ~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 397 (670)
.-+-..+++.+...++......+..++.++-.+...... ......+ -++..+..++ ..++..+...|..++..+...
T Consensus 646 ~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e-~vL~el~~Li-sesdlhvt~~a~~~L~tl~~~ 723 (1233)
T KOG1824|consen 646 SPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLE-AVLVELPPLI-SESDLHVTQLAVAFLTTLAII 723 (1233)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH-HHHHHhhhhh-hHHHHHHHHHHHHHHHHHHhc
Confidence 222345678888888877777777777777666532110 1111111 1233344444 455667778888888888887
Q ss_pred CCCCChhhhhhhHHHHHHhhccCC--hhHHH--------------------------------------------HHHHH
Q 037562 398 KPQPPFNQVRPALPVLAQLIRSND--EEVLT--------------------------------------------DACWA 431 (670)
Q Consensus 398 ~~~~~~~~~~~~i~~L~~lL~~~~--~~v~~--------------------------------------------~al~~ 431 (670)
.|.........+++.++.+++++- ..... ..+.|
T Consensus 724 ~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~c 803 (1233)
T KOG1824|consen 724 QPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKC 803 (1233)
T ss_pred ccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHH
Confidence 765555555667777776666431 00000 11111
Q ss_pred HHHhccCChHHHHHHHHcCCHHHHHHhcCC--CCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhH
Q 037562 432 LSYLSDGTNDKVQAVIEAGVYPRLVELLGH--SSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESI 509 (670)
Q Consensus 432 L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v 509 (670)
.+.++...++... .....+..-+.+ .+..++.-|+-.+|.+-.+.+... ..++...+++.++++ +.++
T Consensus 804 vA~Lt~~~~~~s~-----s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~----~~e~~~~iieaf~sp-~edv 873 (1233)
T KOG1824|consen 804 VAALTCACPQKSK-----SLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP----QNELKDTIIEAFNSP-SEDV 873 (1233)
T ss_pred HHHHHHhccccch-----hHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc----chhhHHHHHHHcCCC-hHHH
Confidence 1111111110000 122223333332 344577778888888876554322 234566888999999 9999
Q ss_pred HHHHHHHHHHhhcCC-HHHHHHHHh----------------------------cCChHHHHHHhh----cCChhHHHHHH
Q 037562 510 KKEVSWIISNITCGN-REQIQAVID----------------------------SGLIGPIVNLLQ----NTEFDTKKEAA 556 (670)
Q Consensus 510 ~~~a~~~L~~l~~~~-~~~~~~l~~----------------------------~~~i~~L~~ll~----~~~~~v~~~a~ 556 (670)
+..|..+|++++.++ +.+...+.+ ...++.+.++|. .....+|.-.+
T Consensus 874 ksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvA 953 (1233)
T KOG1824|consen 874 KSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVA 953 (1233)
T ss_pred HHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHH
Confidence 999999999998853 333222211 011222333322 23345677777
Q ss_pred HHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHH
Q 037562 557 WAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLE 636 (670)
Q Consensus 557 ~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 636 (670)
.+|+.++.. +|+. .++.|-..+.++.+..|..++.++...+.+...- ...+.+. .+.
T Consensus 954 ECLGkL~l~-epes--------LlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~---------id~~lk~-----~ig 1010 (1233)
T KOG1824|consen 954 ECLGKLVLI-EPES--------LLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQP---------IDPLLKQ-----QIG 1010 (1233)
T ss_pred HHhhhHHhC-ChHH--------HHHHHHHHhcCCCcchhhhhhheeeeeecCCCCc---------cCHHHHH-----HHH
Confidence 777777776 4443 6788888999999999988888877655433221 1111111 134
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562 637 KIENLQSHDDNGISEKAVEILETYW 661 (670)
Q Consensus 637 ~l~~L~~~~~~~v~~~a~~~l~~~~ 661 (670)
..-.+..+++.+|+..|..+++..-
T Consensus 1011 ~fl~~~~dpDl~VrrvaLvv~nSaa 1035 (1233)
T KOG1824|consen 1011 DFLKLLRDPDLEVRRVALVVLNSAA 1035 (1233)
T ss_pred HHHHHHhCCchhHHHHHHHHHHHHH
Confidence 4455677888999999888877653
No 76
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=1.7e-07 Score=92.56 Aligned_cols=310 Identities=14% Similarity=0.087 Sum_probs=200.7
Q ss_pred HHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCC-CCChhhhhhhHHHHHHhhcc
Q 037562 341 RKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKP-QPPFNQVRPALPVLAQLIRS 419 (670)
Q Consensus 341 ~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~i~~L~~lL~~ 419 (670)
..+++.+|..++..-...|.-+.+..+.+.|++.| ++++..+..-+...++|+.-... -.......+++..++.++.+
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s 484 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS 484 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence 34555666677666666777778888899999999 66666666677778888776553 34455558899999999999
Q ss_pred CChhHHHHHHHHHHHhccCChHHHH-HHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCch---hhHHHHhC----
Q 037562 420 NDEEVLTDACWALSYLSDGTNDKVQ-AVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDF---QTQCIINC---- 491 (670)
Q Consensus 420 ~~~~v~~~al~~L~~l~~~~~~~~~-~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~---~~~~l~~~---- 491 (670)
.|..++....|.++.+..+.+...+ ..+..-++..++.+..++...++.+++.++.|+.++... ....+++.
T Consensus 485 KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ 564 (743)
T COG5369 485 KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRR 564 (743)
T ss_pred chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHH
Confidence 9999999999999999877654433 245557789999999999999999999999999884432 12212211
Q ss_pred CChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHH-hcCChHHHHHHhhc--C---------ChhHHHHHHHHH
Q 037562 492 GALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVI-DSGLIGPIVNLLQN--T---------EFDTKKEAAWAI 559 (670)
Q Consensus 492 ~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~i~~L~~ll~~--~---------~~~v~~~a~~aL 559 (670)
-..+.+++.+... +|..-...++.+.++++.+......+. +..++..+..++.. + ..++-..-....
T Consensus 565 ylfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~ 643 (743)
T COG5369 565 YLFKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTI 643 (743)
T ss_pred HHHHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceee
Confidence 2466778888888 777777889999999876555444443 33444444444431 1 112222222333
Q ss_pred HHhcCCCCHHHHHHHHHcCCcHHHHhhc---cCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHH
Q 037562 560 SNATKFGTHEQIKHLVREGCVKPLCDLL---LCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLE 636 (670)
Q Consensus 560 ~~l~~~~~~~~~~~l~~~~~i~~L~~ll---~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 636 (670)
.++....+ .+.+.+.-. |.+-.+- .+++.++-.+..|.+.++....+..+.. .....+++.+.+.|.-+
T Consensus 644 v~l~e~~d-~f~r~~~~~---p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vt----ratveR~~iL~~~G~~e 715 (743)
T COG5369 644 VNLSENSD-KFKRLVLTT---PHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVT----RATVERIQILCANGIRE 715 (743)
T ss_pred eccccccc-ccccceecC---CCccccccccCCCchhhhhccceEEEecccCccCCccc----hhhHHHHHHHHHccHHH
Confidence 33333211 110000000 1111111 2334456667777777754332221111 11234678899999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHh
Q 037562 637 KIENLQSHDDNGISEKAVEILETY 660 (670)
Q Consensus 637 ~l~~L~~~~~~~v~~~a~~~l~~~ 660 (670)
-++.++.++++.|++++-.++..+
T Consensus 716 ~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 716 WLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred HHHHHhccCcHHHHHHHHHHHHhh
Confidence 999999999999999999888754
No 77
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.66 E-value=5.1e-06 Score=84.21 Aligned_cols=243 Identities=16% Similarity=0.040 Sum_probs=172.9
Q ss_pred ccHHHHHHHhc-CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 037562 238 EILPAMVDGVW-SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN 316 (670)
Q Consensus 238 ~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~ 316 (670)
.+++.++..+. .++..+...++..+. ..+ .. ..+..++..+.+.+ +.++..++.+|+.+-.
T Consensus 54 ~a~~~L~~aL~~d~~~ev~~~aa~al~---~~~-~~--------~~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~----- 115 (410)
T TIGR02270 54 AATELLVSALAEADEPGRVACAALALL---AQE-DA--------LDLRSVLAVLQAGP-EGLCAGIQAALGWLGG----- 115 (410)
T ss_pred hHHHHHHHHHhhCCChhHHHHHHHHHh---ccC-Ch--------HHHHHHHHHhcCCC-HHHHHHHHHHHhcCCc-----
Confidence 45777888884 566777766665553 221 11 13788999999888 7899999999987754
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhc
Q 037562 317 TKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCR 396 (670)
Q Consensus 317 ~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~ 396 (670)
....+.|+.++++.++.++..++.+++..-. ...+.+...+ ++.++.++..|+.+|..+..
T Consensus 116 ------~~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~ 176 (410)
T TIGR02270 116 ------RQAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAAL-THEDALVRAAALRALGELPR 176 (410)
T ss_pred ------hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHh-cCCCHHHHHHHHHHHHhhcc
Confidence 3467889999999999999988887776321 1356788888 68899999999999998876
Q ss_pred CCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHH
Q 037562 397 GKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN 476 (670)
Q Consensus 397 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 476 (670)
. ..++.|...+.+.++.|+..++.++..+.. + ..+..+..+...........+..++..
T Consensus 177 ~----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~g~~~~~~l~~~lal 235 (410)
T TIGR02270 177 R----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLEGGPHRQRLLVLLAV 235 (410)
T ss_pred c----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhccCccHHHHHHHHHHh
Confidence 4 356778888999999999999999987753 2 122344443333333343333333333
Q ss_pred hhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHH
Q 037562 477 IVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAA 556 (670)
Q Consensus 477 l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 556 (670)
. +.+ ..++.|..+++++ .++..++++++.+.. ...++.|+..+.+ +.++..|.
T Consensus 236 ~--~~~---------~a~~~L~~ll~d~---~vr~~a~~AlG~lg~-----------p~av~~L~~~l~d--~~~aR~A~ 288 (410)
T TIGR02270 236 A--GGP---------DAQAWLRELLQAA---ATRREALRAVGLVGD-----------VEAAPWCLEAMRE--PPWARLAG 288 (410)
T ss_pred C--Cch---------hHHHHHHHHhcCh---hhHHHHHHHHHHcCC-----------cchHHHHHHHhcC--cHHHHHHH
Confidence 2 111 4677888888876 389999999998733 2367788888764 34999999
Q ss_pred HHHHHhcCC
Q 037562 557 WAISNATKF 565 (670)
Q Consensus 557 ~aL~~l~~~ 565 (670)
.++..++..
T Consensus 289 eA~~~ItG~ 297 (410)
T TIGR02270 289 EAFSLITGM 297 (410)
T ss_pred HHHHHhhCC
Confidence 999999874
No 78
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.65 E-value=1.3e-06 Score=85.09 Aligned_cols=268 Identities=15% Similarity=0.095 Sum_probs=181.7
Q ss_pred ccHHHHHHHhcCCCh--HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh
Q 037562 238 EILPAMVDGVWSDDN--SLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSE 315 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~ 315 (670)
+.+..|+.++++++. +++++|++.|.++... ++.+.+...| +..++.+.+....++.+...+.+|.++..++.+
T Consensus 180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred chHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence 567889999988764 5699999999999764 4556666665 555555555544478999999999999999999
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC-CCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhh
Q 037562 316 NTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAG-DSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNF 394 (670)
Q Consensus 316 ~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~-~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l 394 (670)
..+.++.+|++..++--.+..++.+..+|+-+|+|++- .....+..+++..+-+-|+-+- .+.|.-++.+||.+.+.+
T Consensus 256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA-~skDel~R~~AClAV~vl 334 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA-FSKDELLRLHACLAVAVL 334 (832)
T ss_pred HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh-cchHHHHHHHHHHHHhhh
Confidence 99999999999999998888999999999999999984 3445666777776666565555 555777778999999999
Q ss_pred hcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHH
Q 037562 395 CRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTI 474 (670)
Q Consensus 395 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L 474 (670)
+...........++.+...-.++.+-|+.--.. ...+..+ -....-++.|+.+|++..-+.+.-++.-+
T Consensus 335 at~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR----------D~hd~aQ-G~~~d~LqRLvPlLdS~R~EAq~i~AF~l 403 (832)
T KOG3678|consen 335 ATNKEVEREVRKSGTLALVEPLVASLDPGRFAR----------DAHDYAQ-GRGPDDLQRLVPLLDSNRLEAQCIGAFYL 403 (832)
T ss_pred hhhhhhhHHHhhccchhhhhhhhhccCcchhhh----------hhhhhhc-cCChHHHHHhhhhhhcchhhhhhhHHHHH
Confidence 988755555555666555555665555432211 1111111 11114568889999865544433333322
Q ss_pred HHhhc--CCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc
Q 037562 475 RNIVK--GDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC 522 (670)
Q Consensus 475 ~~l~~--~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 522 (670)
..=+. ......+.+-+-|.++.|-.+..++ +..-...|..+|.-+..
T Consensus 404 ~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 404 CAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVIGE 452 (832)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHhcc
Confidence 22111 1122344455778899999988877 65555555566655543
No 79
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=9.8e-06 Score=83.37 Aligned_cols=355 Identities=15% Similarity=0.144 Sum_probs=216.1
Q ss_pred hHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHH
Q 037562 205 IKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVP 284 (670)
Q Consensus 205 i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~ 284 (670)
+...|-+.+..+...-|....-..+ -.-..+....+.+++++..+...|.+.+..+....-...+..+
T Consensus 8 ~~~~f~ksl~dlikgir~~~~~e~~-----fis~~l~e~r~E~k~~d~~~k~~a~~kl~yl~mlg~d~swa~f------- 75 (877)
T KOG1059|consen 8 IDRFFEKSLKDLIKGIRSHKEDEEK-----FISQCLEEIRQELKSDDLNVKSNAVLKLTYLEMLGVDMSWAAF------- 75 (877)
T ss_pred HHHHHHHhHHHHHHHHHHhcccHHH-----HHHHHHHHHHHHhhchhhhhhHHHHHHHHHHHHHcchHHHHhh-------
Confidence 4445555555555444444333222 1123466677777788888888888777666433201111111
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH
Q 037562 285 RFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSVDVRKQTVWALGNVAGDSPRCRDLVL 363 (670)
Q Consensus 285 ~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 363 (670)
..++.+++.. .+..-+..++......+..-..++ ...+++ -+.+++..-...|+.+|+.+...+ -.|+
T Consensus 76 ~iveVmsssk---~~~krigylaa~qSf~~~tdvlmL----~tn~~rkdl~S~n~ye~giAL~GLS~fvTpd-LARD--- 144 (877)
T KOG1059|consen 76 HIVEVMSSSK---FQQKRIGYLAASQSFHDDTDVLML----TTNLLRKDLNSSNVYEVGLALSGLSCIVTPD-LARD--- 144 (877)
T ss_pred hhhhhhhhhh---hHHHHHhHHHHHHhhcCCccHHHH----HHHHHHHHhccCccchhhheecccccccCch-hhHH---
Confidence 1234443322 222222222222221111111111 111111 233444333345666666654322 1222
Q ss_pred hcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHH
Q 037562 364 SQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKV 443 (670)
Q Consensus 364 ~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~ 443 (670)
.-+-++.+| .++.+-++..|..++..++...| .....++|.|..-|.++|+.|+.+|..+++.++..++...
T Consensus 145 ---La~Dv~tLL-~sskpYvRKkAIl~lykvFLkYP----eAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny 216 (877)
T KOG1059|consen 145 ---LADDVFTLL-NSSKPYVRKKAILLLYKVFLKYP----EALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY 216 (877)
T ss_pred ---HHHHHHHHH-hcCchHHHHHHHHHHHHHHHhhh----HhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence 345677788 78888999999999998886543 3457889999999999999999999999999998877553
Q ss_pred HHHHHcCCHHHHHHhcCCC-CccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHH--Hh
Q 037562 444 QAVIEAGVYPRLVELLGHS-SSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIIS--NI 520 (670)
Q Consensus 444 ~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~--~l 520 (670)
- .+.|.+.++|.+. +.-+....+..+++|+.-.|...+ .+++.|..++.+..-..+..++..++. ++
T Consensus 217 L-----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgK-----KLieplt~li~sT~AmSLlYECvNTVVa~s~ 286 (877)
T KOG1059|consen 217 L-----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGK-----KLIEPITELMESTVAMSLLYECVNTVVAVSM 286 (877)
T ss_pred c-----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhh-----hhhhHHHHHHHhhHHHHHHHHHHHHheeehh
Confidence 3 3557888888663 444777888888988876655443 578899999988733344455444443 33
Q ss_pred hcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHH
Q 037562 521 TCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLE 600 (670)
Q Consensus 521 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 600 (670)
..+.++....+. =++..|-.++.+.|++++.-++.|+..++.. .+..... --+.+++++++.|+.+|..|+.
T Consensus 287 s~g~~d~~asiq--LCvqKLr~fiedsDqNLKYlgLlam~KI~kt-Hp~~Vqa-----~kdlIlrcL~DkD~SIRlrALd 358 (877)
T KOG1059|consen 287 SSGMSDHSASIQ--LCVQKLRIFIEDSDQNLKYLGLLAMSKILKT-HPKAVQA-----HKDLILRCLDDKDESIRLRALD 358 (877)
T ss_pred ccCCCCcHHHHH--HHHHHHhhhhhcCCccHHHHHHHHHHHHhhh-CHHHHHH-----hHHHHHHHhccCCchhHHHHHH
Confidence 333222111111 1355677778899999999999999999875 4443333 3567889999999999999999
Q ss_pred HHHHHHHh
Q 037562 601 GLENILKV 608 (670)
Q Consensus 601 ~l~~l~~~ 608 (670)
.++.++..
T Consensus 359 Ll~gmVsk 366 (877)
T KOG1059|consen 359 LLYGMVSK 366 (877)
T ss_pred HHHHHhhh
Confidence 99888754
No 80
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.64 E-value=1.7e-05 Score=83.98 Aligned_cols=354 Identities=14% Similarity=0.126 Sum_probs=217.3
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHH
Q 037562 242 AMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVI 321 (670)
Q Consensus 242 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 321 (670)
.+++.+.+.|.+.++.|..-|.+-...+ .-..+.--+..++..++++|++.+ .+||..|++|++-++..-++.+ +
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~---l 83 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQ---L 83 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHH---H
Confidence 6888888999999999988887654432 111111223346888999999999 8999999999999986222222 1
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHh----cccCC-hhHHHHHHHHHHhhhc
Q 037562 322 DHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAEL----NENAN-LSMLRTATWTLFNFCR 396 (670)
Q Consensus 322 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l----~~~~~-~~~~~~a~~~L~~l~~ 396 (670)
+ ..++.|+.-+-+..+..|..+.-+|......-+..........+.+.+...+ ....+ ..++-.++-.+.....
T Consensus 84 e-~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls 162 (1233)
T KOG1824|consen 84 E-TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS 162 (1233)
T ss_pred H-HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence 1 2355566654445555555444444333322222222222333344444333 22222 2355566666655444
Q ss_pred CCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCC-CccchhHHHHHHH
Q 037562 397 GKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHS-SSSVLTPALRTIR 475 (670)
Q Consensus 397 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~ 475 (670)
....--..+..+++..++.-+.++...|+..++.+++.++...+.. .+. ++++.+.+-|..+ +......-+.+|+
T Consensus 163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~---ly~-~li~~Ll~~L~~~~q~~~~rt~Iq~l~ 238 (1233)
T KOG1824|consen 163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD---LYV-ELIEHLLKGLSNRTQMSATRTYIQCLA 238 (1233)
T ss_pred hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH---HHH-HHHHHHHhccCCCCchHHHHHHHHHHH
Confidence 3322222244566677777788888999999999999998654322 121 4556666666553 3334445566777
Q ss_pred HhhcCCchhhHHHHhCCChHHHHHhh---ccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhc------
Q 037562 476 NIVKGDDFQTQCIINCGALPYFLDML---VHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQN------ 546 (670)
Q Consensus 476 ~l~~~~~~~~~~l~~~~~~~~L~~~l---~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~------ 546 (670)
.++........ ---...++.+.+.. +.. +.+.|+....++..+....|..+..... .++..+++.+..
T Consensus 239 ~i~r~ag~r~~-~h~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~y 315 (1233)
T KOG1824|consen 239 AICRQAGHRFG-SHLDKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHVP-EIINLCLSYISYDPNYNY 315 (1233)
T ss_pred HHHHHhcchhh-cccchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccch-HHHHHHHHHhccCCCCCC
Confidence 77664332211 11235778888888 556 8899999999999887765554432221 123333332210
Q ss_pred -----------------C-----------ChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHH
Q 037562 547 -----------------T-----------EFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVC 598 (670)
Q Consensus 547 -----------------~-----------~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 598 (670)
+ ++.||++|+.++..+... ..+....+.+. +-+.++.-++.....|+.-+
T Consensus 316 d~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS-R~E~L~~~~q~-l~p~lI~RfkEREEnVk~dv 393 (1233)
T KOG1824|consen 316 DTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS-RLEMLPDFYQT-LGPALISRFKEREENVKADV 393 (1233)
T ss_pred CCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc-cHHHHHHHHHH-hCHHHHHHHHHHhhhHHHHH
Confidence 0 135999999999998875 55666665554 66888898999999999999
Q ss_pred HHHHHHHHHhhh
Q 037562 599 LEGLENILKVGV 610 (670)
Q Consensus 599 ~~~l~~l~~~~~ 610 (670)
+.++..++..-.
T Consensus 394 f~~yi~ll~qt~ 405 (1233)
T KOG1824|consen 394 FHAYIALLKQTR 405 (1233)
T ss_pred HHHHHHHHHcCC
Confidence 999988887543
No 81
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=4.7e-05 Score=81.49 Aligned_cols=366 Identities=14% Similarity=0.167 Sum_probs=234.2
Q ss_pred HHHHHHHHHHHHhcCCCCCcH----HHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHH
Q 037562 254 LQLEATTLFINLLSFDRSPPI----DEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIF 329 (670)
Q Consensus 254 ~~~~a~~~L~~l~~~~~~~~~----~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L 329 (670)
-...++.+|.|+.+.+ .+.. .+..--|.++-+..++.....++++..|+.++..+.. +.++...++..|.+..|
T Consensus 1741 ~v~m~LtAL~Nli~~n-PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSAN-PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTL 1818 (2235)
T ss_pred HHHHHHHHHHHHHhhC-cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHH
Confidence 4567888999998874 2221 1222346778888888765548999999999998887 88899999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC---CCCChhhh
Q 037562 330 VKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK---PQPPFNQV 406 (670)
Q Consensus 330 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~ 406 (670)
+.+|.+ -+..|+.++.+|..++... .......+.|++..+...+..+..++.+.+++..++.+..+. |...+..+
T Consensus 1819 L~lLHS-~PS~R~~vL~vLYAL~S~~-~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~ 1896 (2235)
T KOG1789|consen 1819 LTLLHS-QPSMRARVLDVLYALSSNG-QIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLI 1896 (2235)
T ss_pred HHHHhc-ChHHHHHHHHHHHHHhcCc-HHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehH
Confidence 999874 4678999999999998654 445556678889999998878888899999999999999876 33333333
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHHhccCChH----HHHHHHHcCCHHHHHH-hcCC--C----CccchhHHHH---
Q 037562 407 RPALPVLAQLIRSNDEEVLTDACWALSYLSDGTND----KVQAVIEAGVYPRLVE-LLGH--S----SSSVLTPALR--- 472 (670)
Q Consensus 407 ~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~----~~~~~~~~~~i~~L~~-lL~~--~----~~~v~~~a~~--- 472 (670)
...-..++..++++. +++..++..-.++++- ....-+. +.+..++. +.+. . ++++-+..+.
T Consensus 1897 kFLP~~f~d~~RD~P----EAaVH~fE~T~EnPELiWn~~~r~kvS-~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~E 1971 (2235)
T KOG1789|consen 1897 KFLPEIFADSLRDSP----EAAVHMFESTSENPELIWNEVTRQKVS-GIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSE 1971 (2235)
T ss_pred HhchHHHHHHHhcCH----HHHHHHHhccCCCcccccCHhHHHHHH-HHHHHHHHHHHHHhccCCcccccCchhhcchhh
Confidence 333334455554332 3333444333332210 0000000 11111111 1111 1 1222222211
Q ss_pred ----------HHHHhhcCCc--hhhHHHHhCCChHHHHHhhccCC-chhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHH
Q 037562 473 ----------TIRNIVKGDD--FQTQCIINCGALPYFLDMLVHNH-EESIKKEVSWIISNITCGNREQIQAVIDSGLIGP 539 (670)
Q Consensus 473 ----------~L~~l~~~~~--~~~~~l~~~~~~~~L~~~l~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~ 539 (670)
.+..+..+.. -.....+-.+.++.+.+++..+. ....-..-..++..+.+..|.....+-.-|.+|.
T Consensus 1972 a~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK 2051 (2235)
T KOG1789|consen 1972 ADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPK 2051 (2235)
T ss_pred hccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHH
Confidence 1111111110 00111122345667777776541 2233344445556666667777777778899999
Q ss_pred HHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCC
Q 037562 540 IVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAV 619 (670)
Q Consensus 540 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 619 (670)
++..+...+..+-..|+.+|-.++. +......+.....+..++..++.. +.....|++++.+++......
T Consensus 2052 ~~~Am~~~n~s~P~SaiRVlH~Lse--n~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~e------- 2121 (2235)
T KOG1789|consen 2052 FCTAMCLQNTSAPRSAIRVLHELSE--NQFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGE------- 2121 (2235)
T ss_pred HHHHHHhcCCcCcHHHHHHHHHHhh--ccHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHH-------
Confidence 9999987777777999999999988 567888888888888888888643 445568999999999854433
Q ss_pred CCccHHHHHHHHhchHHHHHHhhc
Q 037562 620 GDFNQYAQLVEEAEGLEKIENLQS 643 (670)
Q Consensus 620 ~~~~~~~~~~~~~g~~~~l~~L~~ 643 (670)
...+.-.+|.++.|-.|++
T Consensus 2122 -----LVAQ~LK~gLvpyLL~LLd 2140 (2235)
T KOG1789|consen 2122 -----LVAQMLKCGLVPYLLQLLD 2140 (2235)
T ss_pred -----HHHHHhccCcHHHHHHHhc
Confidence 2344448999999877753
No 82
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.59 E-value=2.1e-07 Score=93.39 Aligned_cols=264 Identities=15% Similarity=0.121 Sum_probs=168.9
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh--HHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCC
Q 037562 324 GAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC--RDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQP 401 (670)
Q Consensus 324 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~--~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 401 (670)
-++..++.+|+++.+.+|..|+...+.++..-..+ .+.+...|. .|..-+ ....+++.-..+.++..+.......
T Consensus 604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhccc
Confidence 35678888999999999999999988886221111 112222221 233444 5567777776666666655443211
Q ss_pred -ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcC
Q 037562 402 -PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKG 480 (670)
Q Consensus 402 -~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 480 (670)
-..-..+++|.|..+|++....++.+.+..++.++...++....--=..+-=-|+..|.+.+.++|.+|...++.++..
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 1223478999999999999999999999999999987765432111012223467778888899999999999988763
Q ss_pred CchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHH
Q 037562 481 DDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAIS 560 (670)
Q Consensus 481 ~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 560 (670)
-.. ..++..|+.-|+.. +...|.....+++-.+. ...--.++|.|+.=...++..|+.-.+.+++
T Consensus 761 iGP-------qdvL~~LlnnLkvq-eRq~RvctsvaI~iVae-------~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~ 825 (975)
T COG5181 761 IGP-------QDVLDILLNNLKVQ-ERQQRVCTSVAISIVAE-------YCGPFSVLPTLMSDYETPEANVQNGVLKAMC 825 (975)
T ss_pred cCH-------HHHHHHHHhcchHH-HHHhhhhhhhhhhhhHh-------hcCchhhHHHHHhcccCchhHHHHhHHHHHH
Confidence 211 12344455555444 33333222223332222 1112246788887777888999999999999
Q ss_pred HhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHH
Q 037562 561 NATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILK 607 (670)
Q Consensus 561 ~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~ 607 (670)
.+..........++.. ..|.|.+.+.+.|+--+..+...+..+.-
T Consensus 826 fmFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~L 870 (975)
T COG5181 826 FMFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVL 870 (975)
T ss_pred HHHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhc
Confidence 9887543344444433 56778888888888877777777666543
No 83
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.8e-05 Score=73.87 Aligned_cols=348 Identities=15% Similarity=0.147 Sum_probs=225.6
Q ss_pred hhhHHHHhhcchhhhhhccccCCCccccchhhhh--hccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHc
Q 037562 203 TTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSK--LEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQS 280 (670)
Q Consensus 203 ~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 280 (670)
++++-+.+++..-++.+.++..... +... .+.++.++..+..+|.++...|...+..++.. .+....++++
T Consensus 96 asVKiLackqigcilEdcDtnaVse-----illvvNaeilklildcIggeddeVAkAAiesikrialf--paaleaiFeS 168 (524)
T KOG4413|consen 96 ASVKILACKQIGCILEDCDTNAVSE-----ILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF--PAALEAIFES 168 (524)
T ss_pred chhhhhhHhhhhHHHhcCchhhHHH-----HHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--HHHHHHhccc
Confidence 4678888888888888877543221 1111 25689999999999999999999999999776 5666677776
Q ss_pred CCHHHH--HHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCch
Q 037562 281 GVVPRF--VEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSVDVRKQTVWALGNVAGDSPR 357 (670)
Q Consensus 281 g~l~~L--~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~ 357 (670)
.....+ ..+-...+ +-+|......+..+..-+++.....-..|.+..|..-++. .+.-++..++.....++... .
T Consensus 169 ellDdlhlrnlaakcn-diaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaete-H 246 (524)
T KOG4413|consen 169 ELLDDLHLRNLAAKCN-DIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETE-H 246 (524)
T ss_pred ccCChHHHhHHHhhhh-hHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHh-h
Confidence 665544 33333444 5778888889999988899999999999999999888876 77888889999998888543 3
Q ss_pred hHHHHHhcCChHHHHHHhcccC-ChhHHHHHHHHHHhhhcCC------CCCChhhhhhhHHHHHHhhccCChhHHHHHHH
Q 037562 358 CRDLVLSQGALIPLLAELNENA-NLSMLRTATWTLFNFCRGK------PQPPFNQVRPALPVLAQLIRSNDEEVLTDACW 430 (670)
Q Consensus 358 ~~~~i~~~~~i~~Ll~~l~~~~-~~~~~~~a~~~L~~l~~~~------~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~ 430 (670)
.++.+.+.|.+..+.+.+.... ++--.-.++.....+.... +...-....-.+.....++..+|++.+..|+.
T Consensus 247 greflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiD 326 (524)
T KOG4413|consen 247 GREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAID 326 (524)
T ss_pred hhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHH
Confidence 4778888888888888884332 2322223444444443332 11111111234455567778899999999999
Q ss_pred HHHHhccCChHHHHHHHHcCC--HHHHHHhcCCC-CccchhHHHHHHHHhhcCC---chhh----------HHHHh----
Q 037562 431 ALSYLSDGTNDKVQAVIEAGV--YPRLVELLGHS-SSSVLTPALRTIRNIVKGD---DFQT----------QCIIN---- 490 (670)
Q Consensus 431 ~L~~l~~~~~~~~~~~~~~~~--i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~---~~~~----------~~l~~---- 490 (670)
+++.+..+..+ .+.+...|- ...++.-.-+. ...-+..++.+|.+++... ++++ ..+++
T Consensus 327 alGilGSnteG-adlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaq 405 (524)
T KOG4413|consen 327 ALGILGSNTEG-ADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQ 405 (524)
T ss_pred HHHhccCCcch-hHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhh
Confidence 99999866543 344555442 33343333333 3345677888888887532 1110 11111
Q ss_pred ---CCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcC---ChhHHHHHHHHHHH
Q 037562 491 ---CGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNT---EFDTKKEAAWAISN 561 (670)
Q Consensus 491 ---~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~~ 561 (670)
..-...+..+++.+ .++++-.+..++..++...-.....+-+.+++..+.+.-... ..+.+.+++.|+.+
T Consensus 406 stkldPleLFlgilqQp-fpEihcAalktfTAiaaqPWalkeifakeefieiVtDastEhaKaakdAkYeccKAiae 481 (524)
T KOG4413|consen 406 STKLDPLELFLGILQQP-FPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIAE 481 (524)
T ss_pred ccCCChHHHHHHHHcCC-ChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHHH
Confidence 12345566777777 899999999999999765333333444667777666643321 13445555555544
No 84
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=98.56 E-value=1.7e-05 Score=80.42 Aligned_cols=242 Identities=18% Similarity=0.031 Sum_probs=170.8
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 037562 282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDL 361 (670)
Q Consensus 282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 361 (670)
.++.++..+......+++..++.++..... + .++..++..|.+.++.++..++.+|+.+- .+
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~--~~----- 116 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQED--A---------LDLRSVLAVLQAGPEGLCAGIQAALGWLG--GR----- 116 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccCC--h---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCC--ch-----
Confidence 577888888543337887776666643321 1 13789999999999999999999998763 22
Q ss_pred HHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChH
Q 037562 362 VLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTND 441 (670)
Q Consensus 362 i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~ 441 (670)
...+.|+..+ .+.++.++..++.++..... ...+.+..+|++.++.|+..++.+++.+...
T Consensus 117 ----~a~~~L~~~L-~~~~p~vR~aal~al~~r~~-----------~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--- 177 (410)
T TIGR02270 117 ----QAEPWLEPLL-AASEPPGRAIGLAALGAHRH-----------DPGPALEAALTHEDALVRAAALRALGELPRR--- 177 (410)
T ss_pred ----HHHHHHHHHh-cCCChHHHHHHHHHHHhhcc-----------ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc---
Confidence 2467788888 77888898888877766221 2346788889999999999999999988643
Q ss_pred HHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhh
Q 037562 442 KVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNIT 521 (670)
Q Consensus 442 ~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~ 521 (670)
..++.|...+.+.++.||..|+..++.+-. + ..+..+..+.... .......+..++...
T Consensus 178 --------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~---------~A~~~l~~~~~~~-g~~~~~~l~~~lal~- 236 (410)
T TIGR02270 178 --------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--R---------LAWGVCRRFQVLE-GGPHRQRLLVLLAVA- 236 (410)
T ss_pred --------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHhcc-CccHHHHHHHHHHhC-
Confidence 345667788999999999999999977633 2 1234555544444 333443333344333
Q ss_pred cCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHH
Q 037562 522 CGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEG 601 (670)
Q Consensus 522 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~ 601 (670)
+.+ ..++.|..+++++ .++..++.+++.+... . .++.|+..+++. .++..|-.+
T Consensus 237 -~~~---------~a~~~L~~ll~d~--~vr~~a~~AlG~lg~p---~---------av~~L~~~l~d~--~~aR~A~eA 290 (410)
T TIGR02270 237 -GGP---------DAQAWLRELLQAA--ATRREALRAVGLVGDV---E---------AAPWCLEAMREP--PWARLAGEA 290 (410)
T ss_pred -Cch---------hHHHHHHHHhcCh--hhHHHHHHHHHHcCCc---c---------hHHHHHHHhcCc--HHHHHHHHH
Confidence 222 3567778887754 4999999999987663 2 688888888644 389999999
Q ss_pred HHHHHH
Q 037562 602 LENILK 607 (670)
Q Consensus 602 l~~l~~ 607 (670)
+..|.-
T Consensus 291 ~~~ItG 296 (410)
T TIGR02270 291 FSLITG 296 (410)
T ss_pred HHHhhC
Confidence 998864
No 85
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=6.5e-05 Score=78.32 Aligned_cols=251 Identities=16% Similarity=0.166 Sum_probs=152.4
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562 239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK 318 (670)
Q Consensus 239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 318 (670)
-+|..++...+++.+++.-..-.|.+.|... +.... =-+..+-+-|.+++ +.+|..|++++..+-. ....
T Consensus 72 ~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeq--pdLAL----LSIntfQk~L~DpN-~LiRasALRvlSsIRv---p~Ia 141 (968)
T KOG1060|consen 72 LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQ--PDLAL----LSINTFQKALKDPN-QLIRASALRVLSSIRV---PMIA 141 (968)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcC--CCcee----eeHHHHHhhhcCCc-HHHHHHHHHHHHhcch---hhHH
Confidence 3667777777777777777766676666553 11111 13667777888888 8888888888877643 1111
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC
Q 037562 319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK 398 (670)
Q Consensus 319 ~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~ 398 (670)
.+ ++-++-+...++++.||..|+-++-.+-.-+++.+.. +..++..|..+.++-|.-.|+.++-.+|-+.
T Consensus 142 PI----~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~q------L~e~I~~LLaD~splVvgsAv~AF~evCPer 211 (968)
T KOG1060|consen 142 PI----MLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQ------LEEVIKKLLADRSPLVVGSAVMAFEEVCPER 211 (968)
T ss_pred HH----HHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHH------HHHHHHHHhcCCCCcchhHHHHHHHHhchhH
Confidence 11 1223344556788889998888888887666664443 3345555557788888888888888777542
Q ss_pred CCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC---hHH----------------------HHHHHHc---C
Q 037562 399 PQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGT---NDK----------------------VQAVIEA---G 450 (670)
Q Consensus 399 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~---~~~----------------------~~~~~~~---~ 450 (670)
...+.+-...+..+|.+-++--+..++..|...++.. +.. .....+. -
T Consensus 212 ----ldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~l 287 (968)
T KOG1060|consen 212 ----LDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKL 287 (968)
T ss_pred ----HHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHH
Confidence 3334455555666665545444444555554443210 000 0000000 1
Q ss_pred CHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc
Q 037562 451 VYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC 522 (670)
Q Consensus 451 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 522 (670)
+++..-.++++.++.|...++.+...++-.+ .. ..+++.|+.+|.+. .++|......+..++.
T Consensus 288 LL~stkpLl~S~n~sVVmA~aql~y~lAP~~--~~-----~~i~kaLvrLLrs~--~~vqyvvL~nIa~~s~ 350 (968)
T KOG1060|consen 288 LLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN--QV-----TKIAKALVRLLRSN--REVQYVVLQNIATISI 350 (968)
T ss_pred HHHhccHHHhcCCcHHHHHHHhHHHhhCCHH--HH-----HHHHHHHHHHHhcC--CcchhhhHHHHHHHHh
Confidence 3455556778889999999999999988633 11 23577888888665 4566666666665554
No 86
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=0.00018 Score=77.21 Aligned_cols=367 Identities=16% Similarity=0.184 Sum_probs=231.2
Q ss_pred hhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhc-CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCC
Q 037562 204 TIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVW-SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGV 282 (670)
Q Consensus 204 ~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~ 282 (670)
+--.+.+..+++++.......+.-.+. ..-++.++-+...+. ..++.++.-|+.++..+.+. .+....+.+.|.
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe---~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~v 1814 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSE---ILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNV 1814 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccch---hhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhH
Confidence 344567888888888877665444331 234577788888887 57889999999999888765 788889999999
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCC---chh
Q 037562 283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA-SPSVDVRKQTVWALGNVAGDS---PRC 358 (670)
Q Consensus 283 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~---~~~ 358 (670)
+..|+.+|.+. |..|..++.+|..++. +++......+.|++..+..++- +.++..|.+|+..++.+..+. |..
T Consensus 1815 L~~LL~lLHS~--PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV 1891 (2235)
T KOG1789|consen 1815 LTTLLTLLHSQ--PSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRV 1891 (2235)
T ss_pred HHHHHHHHhcC--hHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCce
Confidence 99999998765 4889999999999998 7888888888888888887654 577899999999999998543 222
Q ss_pred HHHHHhcCChHH-HHHHhcccCChhHHHHHHHHHHhhhcCCCC----CChhhhhhhHHHHH-Hhhcc--CChhHH----H
Q 037562 359 RDLVLSQGALIP-LLAELNENANLSMLRTATWTLFNFCRGKPQ----PPFNQVRPALPVLA-QLIRS--NDEEVL----T 426 (670)
Q Consensus 359 ~~~i~~~~~i~~-Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~----~~~~~~~~~i~~L~-~lL~~--~~~~v~----~ 426 (670)
+-.++. ++|. ++..+++++ +.+..++-.-..++.- ......++.+..++ ++.+. .++.+. +
T Consensus 1892 ~ITL~k--FLP~~f~d~~RD~P-----EAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PE 1964 (2235)
T KOG1789|consen 1892 TITLIK--FLPEIFADSLRDSP-----EAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPE 1964 (2235)
T ss_pred eeehHH--hchHHHHHHHhcCH-----HHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCch
Confidence 222211 2332 223332221 2333333332222210 01111233333322 22221 111111 0
Q ss_pred HHH-----------H--HHHHhccCCh---HHHHHHHHcCCHHHHHHhcCCCCcc--chhHHHHHHHHhhcCCchhhHHH
Q 037562 427 DAC-----------W--ALSYLSDGTN---DKVQAVIEAGVYPRLVELLGHSSSS--VLTPALRTIRNIVKGDDFQTQCI 488 (670)
Q Consensus 427 ~al-----------~--~L~~l~~~~~---~~~~~~~~~~~i~~L~~lL~~~~~~--v~~~a~~~L~~l~~~~~~~~~~l 488 (670)
..+ . .++.....+. ..-..++ .+.++.+..++..+++. .-..-..++-.+....+.....+
T Consensus 1965 qsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL-~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqi 2043 (2235)
T KOG1789|consen 1965 QSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFL-TELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQL 2043 (2235)
T ss_pred hhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHH-HHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhC
Confidence 000 0 0011110000 0001112 25667777777765543 22223334445555566667767
Q ss_pred HhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCH
Q 037562 489 INCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTH 568 (670)
Q Consensus 489 ~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 568 (670)
-..|.+|.++..+... +..+-..|...+..++. +.-....+.....+..++..+.. ......-|+.+|..+......
T Consensus 2044 p~LGylPK~~~Am~~~-n~s~P~SaiRVlH~Lse-n~~C~~AMA~l~~i~~~m~~mkK-~~~~~GLA~EalkR~~~r~~~ 2120 (2235)
T KOG1789|consen 2044 PSLGYLPKFCTAMCLQ-NTSAPRSAIRVLHELSE-NQFCCDAMAQLPCIDGIMKSMKK-QPSLMGLAAEALKRLMKRNTG 2120 (2235)
T ss_pred CCccchHHHHHHHHhc-CCcCcHHHHHHHHHHhh-ccHHHHHHhccccchhhHHHHHh-cchHHHHHHHHHHHHHHHhHH
Confidence 7789999999999887 66677888999998865 35556666666677777777653 345556899999999887666
Q ss_pred HHHHHHHHcCCcHHHHhhccC
Q 037562 569 EQIKHLVREGCVKPLCDLLLC 589 (670)
Q Consensus 569 ~~~~~l~~~~~i~~L~~ll~~ 589 (670)
+........|.++.|.++++.
T Consensus 2121 eLVAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2121 ELVAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred HHHHHHhccCcHHHHHHHhcc
Confidence 777777889999999999954
No 87
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=98.51 E-value=1.4e-05 Score=80.76 Aligned_cols=337 Identities=13% Similarity=0.102 Sum_probs=209.3
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh--HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q 037562 282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN--TKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCR 359 (670)
Q Consensus 282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~--~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 359 (670)
++..++..|++.. +.+|.+|+...+.++.--..+ .+.+...| ..|.+.|....+++.-..+.+++.+.....--.
T Consensus 605 ivStiL~~L~~k~-p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKP-PDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhcccc
Confidence 4556677888888 899999999888876511100 11222222 245566777788888777777766652211000
Q ss_pred HHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhh-hhhhHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 037562 360 DLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQ-VRPALPVLAQLIRSNDEEVLTDACWALSYLSDG 438 (670)
Q Consensus 360 ~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~ 438 (670)
..---.|.+|.+.-.| .+....++.+....+..++...|...-.. ...+.=.|+.+|.+-+.+++.+|..+++.++..
T Consensus 682 mqpPi~~ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 682 MQPPISGILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred cCCchhhccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 0001245788888888 67778899999999999998876533222 234445578888999999999999999998854
Q ss_pred ChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHH
Q 037562 439 TNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIIS 518 (670)
Q Consensus 439 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~ 518 (670)
-.. .+++..|+.-|+..+-..|....-+|+-.+..+. -..++|.|+.=...+ +..|+.....+++
T Consensus 761 iGP-------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg-------pfsVlP~lm~dY~TP-e~nVQnGvLkam~ 825 (975)
T COG5181 761 IGP-------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG-------PFSVLPTLMSDYETP-EANVQNGVLKAMC 825 (975)
T ss_pred cCH-------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC-------chhhHHHHHhcccCc-hhHHHHhHHHHHH
Confidence 322 1345556666665555555555555554443221 123566666666666 7788888888888
Q ss_pred HhhcC-CHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHH-HHHHHHcCCcHHHHhhccCCChHHHH
Q 037562 519 NITCG-NREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQ-IKHLVREGCVKPLCDLLLCADPKIVT 596 (670)
Q Consensus 519 ~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~-~~~l~~~~~i~~L~~ll~~~~~~v~~ 596 (670)
.+... ......++. .+.|.|-+.+.+.|+--|..|...+.+++.++.-.. ...++. .+..|..-+-.+.|.+..
T Consensus 826 fmFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--LlNllwpNIle~sPhvi~ 901 (975)
T COG5181 826 FMFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--LLNLLWPNILEPSPHVIQ 901 (975)
T ss_pred HHHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHHhhhhccCCCcHHHH
Confidence 77552 122222332 367788888999999999999999999988642111 111111 122233333567788877
Q ss_pred HHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562 597 VCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYW 661 (670)
Q Consensus 597 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~ 661 (670)
....++..+...-.. ..| ...+++=+-|++..|++.+=.+.+.+|
T Consensus 902 ~~~Eg~e~~~~~lg~---------------g~~-----m~Yv~qGLFHPs~~VRk~ywtvyn~my 946 (975)
T COG5181 902 SFDEGMESFATVLGS---------------GAM-----MKYVQQGLFHPSSTVRKRYWTVYNIMY 946 (975)
T ss_pred HHHHHHHHHHHHhcc---------------HHH-----HHHHHHhccCchHHHHHHHHHHHhhhh
Confidence 777777665432111 011 345666677888888877766665554
No 88
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.50 E-value=2.3e-06 Score=68.89 Aligned_cols=154 Identities=9% Similarity=-0.005 Sum_probs=125.5
Q ss_pred ChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHH
Q 037562 493 ALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIK 572 (670)
Q Consensus 493 ~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 572 (670)
.+..|+.-.....+.+.++....-|+|++- +|.+...+.+.++++.+++.+..++..+++.++.+|+|++. ++...+
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~n~~ 93 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKTNAK 93 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChHHHH
Confidence 456666666666688899999999999954 57788889999999999999999999999999999999998 788899
Q ss_pred HHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHH
Q 037562 573 HLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEK 652 (670)
Q Consensus 573 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~ 652 (670)
.+.+.++++.++..++++...+...++.++..+...+. ..++.+-.--.++.++.+..+.+.+.+..
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~R-------------t~r~ell~p~Vv~~v~r~~~s~s~~~rnL 160 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGER-------------TERDELLSPAVVRTVQRWRESKSHDERNL 160 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCccc-------------chhHHhccHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999999999998888888776543222 23445555666777888877777888888
Q ss_pred HHHHHHHhcC
Q 037562 653 AVEILETYWS 662 (670)
Q Consensus 653 a~~~l~~~~~ 662 (670)
|...++.+..
T Consensus 161 a~~fl~~~~~ 170 (173)
T KOG4646|consen 161 ASAFLDKHVH 170 (173)
T ss_pred HHHHHHhhcc
Confidence 8888887653
No 89
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=3.2e-05 Score=71.86 Aligned_cols=271 Identities=13% Similarity=0.187 Sum_probs=173.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHH--HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVI--QSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT 317 (670)
Q Consensus 240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 317 (670)
+..+++++.+.++.++..|...+..+... ..+.+. +.-.++.+.+++...+ + ...|+.++.|++. +...+
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~----~~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq-~~~l~ 76 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR----GLQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQ-KEELR 76 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc----chhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHh-hHHHH
Confidence 45788899999999999999988877544 112121 2235778888888877 4 7789999999998 77888
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhc-----CChHHHHHHhcccC-Ch-hHHHHHHHH
Q 037562 318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQ-----GALIPLLAELNENA-NL-SMLRTATWT 390 (670)
Q Consensus 318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-----~~i~~Ll~~l~~~~-~~-~~~~~a~~~ 390 (670)
+.++.. .+..++..+.++...+....+..|.|++.+........... .++..++....+.. +. .-..+.+.+
T Consensus 77 ~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v 155 (353)
T KOG2973|consen 77 KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV 155 (353)
T ss_pred HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence 888876 77888888888877888899999999998877665544332 23444444332322 21 234577788
Q ss_pred HHhhhcCCCCCChhhhhhh--HHHHHHhhccCChhHHHH-HHHHHHHhccCChHHHHHHHHc--CCHHHHH---------
Q 037562 391 LFNFCRGKPQPPFNQVRPA--LPVLAQLIRSNDEEVLTD-ACWALSYLSDGTNDKVQAVIEA--GVYPRLV--------- 456 (670)
Q Consensus 391 L~~l~~~~~~~~~~~~~~~--i~~L~~lL~~~~~~v~~~-al~~L~~l~~~~~~~~~~~~~~--~~i~~L~--------- 456 (670)
++|+++....+........ .+.+..+-. .+..+|.. .+.+|.|.+........ +++. .+++.++
T Consensus 156 f~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e~~~lLp~iLlPlagpee~ 233 (353)
T KOG2973|consen 156 FANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEV-LLDESINLLPAILLPLAGPEEL 233 (353)
T ss_pred HHHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHH-HhcchHHHHHHHHhhcCCcccc
Confidence 8888887644433333222 233444433 45555543 66778887744332222 2221 1222222
Q ss_pred ------------HhcC-----CCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHH
Q 037562 457 ------------ELLG-----HSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISN 519 (670)
Q Consensus 457 ------------~lL~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~ 519 (670)
+++. .+++.+|..-+.+|..++.. ...++.+...|+.+.+-.+=+...++++++..-.....
T Consensus 234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~ 312 (353)
T KOG2973|consen 234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQM 312 (353)
T ss_pred CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 2222 24567999999999999873 44566677778777777776666466666655555544
Q ss_pred hhc
Q 037562 520 ITC 522 (670)
Q Consensus 520 l~~ 522 (670)
+..
T Consensus 313 Lv~ 315 (353)
T KOG2973|consen 313 LVR 315 (353)
T ss_pred HHh
Confidence 544
No 90
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=4.5e-06 Score=89.15 Aligned_cols=248 Identities=17% Similarity=0.195 Sum_probs=192.3
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT 317 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 317 (670)
+.+|.+++.|-|.- -+..|+..|...+... ...+.....-|++|.++++|+++. .+++..-+.+.+.|..-++.+.
T Consensus 472 eQLPiVLQVLLSQv--HRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ 547 (1387)
T KOG1517|consen 472 EQLPIVLQVLLSQV--HRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQ 547 (1387)
T ss_pred HhcchHHHHHHHHH--HHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhH
Confidence 45677777664332 3456777777776654 666777788999999999999999 8999999999999888789999
Q ss_pred HHHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhh
Q 037562 318 KVVIDHGAVPIFVKLLAS---PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNF 394 (670)
Q Consensus 318 ~~i~~~~~i~~L~~lL~~---~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l 394 (670)
..+++.++-..+++.|.. -+++-|..|+.+|+.++.+-+..++...+.+.+...+..+.++..+-++.-++-+|..|
T Consensus 548 ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L 627 (1387)
T KOG1517|consen 548 ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL 627 (1387)
T ss_pred HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 999998888999998876 24688899999999999888888888889888888888885545567777899999999
Q ss_pred hcCCCCCChhhh-hhhHHHHHHhhccCChhHHHHHHHHHHHhccC----ChHHHHHH------------HHcCCH---HH
Q 037562 395 CRGKPQPPFNQV-RPALPVLAQLIRSNDEEVLTDACWALSYLSDG----TNDKVQAV------------IEAGVY---PR 454 (670)
Q Consensus 395 ~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~----~~~~~~~~------------~~~~~i---~~ 454 (670)
-.+.+..+..-. .++...|..+|.++-++||.+|+.+|+.+..+ .+++...+ .+.-.. ..
T Consensus 628 W~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ 707 (1387)
T KOG1517|consen 628 WEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS 707 (1387)
T ss_pred hhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence 888755554443 67888999999999999999999999998865 23332222 221112 36
Q ss_pred HHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHH
Q 037562 455 LVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCII 489 (670)
Q Consensus 455 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~ 489 (670)
++..++++.+-++.+...++..++.+.......++
T Consensus 708 ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va 742 (1387)
T KOG1517|consen 708 LLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVA 742 (1387)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence 77778888888999999999998887665555443
No 91
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.48 E-value=4.7e-05 Score=77.06 Aligned_cols=251 Identities=25% Similarity=0.263 Sum_probs=177.9
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT 317 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 317 (670)
..++.+++.+.+++..++..|+..+..+... ..++.+..++.+.+ +.+|..|+.+|+.+-.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l~d~~-~~vr~~a~~aLg~~~~------ 103 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELLSDED-PRVRDAAADALGELGD------ 103 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHhcCCC-HHHHHHHHHHHHccCC------
Confidence 4578899999988999999999998766432 26899999999999 8999999999988864
Q ss_pred HHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccC---------Ch--hHHH
Q 037562 318 KVVIDHGAVPIFVKLLA-SPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENA---------NL--SMLR 385 (670)
Q Consensus 318 ~~i~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~---------~~--~~~~ 385 (670)
...++.++.++. +++..+|..+.++|+.+-... .+.+++..+.+.. .+ .++.
T Consensus 104 -----~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~ 167 (335)
T COG1413 104 -----PEAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVRA 167 (335)
T ss_pred -----hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHHH
Confidence 236889999998 599999999999999984221 3677777774332 01 3455
Q ss_pred HHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCcc
Q 037562 386 TATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSS 465 (670)
Q Consensus 386 ~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~ 465 (670)
.+...+..+-.. ..++.+..++.+.+..++..+..+++.+.... ..+...+...+.+++..
T Consensus 168 ~a~~~l~~~~~~----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~ 228 (335)
T COG1413 168 AAAEALGELGDP----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLE 228 (335)
T ss_pred HHHHHHHHcCCh----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHH
Confidence 666666655543 35677888888888888888888888877543 23446777888888888
Q ss_pred chhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh
Q 037562 466 VLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ 545 (670)
Q Consensus 466 v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~ 545 (670)
++..++..++.+-.. .....+...+.+. +..++..+....... .. ......+...+.
T Consensus 229 vr~~~~~~l~~~~~~-----------~~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~---------~~~~~~l~~~~~ 285 (335)
T COG1413 229 VRKAALLALGEIGDE-----------EAVDALAKALEDE-DVILALLAAAALGAL--DL---------AEAALPLLLLLI 285 (335)
T ss_pred HHHHHHHHhcccCcc-----------hhHHHHHHHHhcc-chHHHHHHHHHhccc--Cc---------hhhHHHHHHHhh
Confidence 888888888766431 2455677777777 666665555555411 00 112334445555
Q ss_pred cCChhHHHHHHHHHHHhcCC
Q 037562 546 NTEFDTKKEAAWAISNATKF 565 (670)
Q Consensus 546 ~~~~~v~~~a~~aL~~l~~~ 565 (670)
+.+..++..+..++......
T Consensus 286 ~~~~~~~~~~~~~l~~~~~~ 305 (335)
T COG1413 286 DEANAVRLEAALALGQIGQE 305 (335)
T ss_pred cchhhHHHHHHHHHHhhccc
Confidence 66777888888877777664
No 92
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=2.1e-05 Score=78.75 Aligned_cols=318 Identities=12% Similarity=0.098 Sum_probs=198.7
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT 317 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 317 (670)
+.++.++....+.|..++..|+..+.|++...+.+ ....-..+...+.++..+++ ..++.. +..+-.+..+-...+
T Consensus 84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~--v~~~Fn~iFdvL~klsaDsd-~~V~~~-aeLLdRLikdIVte~ 159 (675)
T KOG0212|consen 84 KIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGE--VLVYFNEIFDVLCKLSADSD-QNVRGG-AELLDRLIKDIVTES 159 (675)
T ss_pred HhhHHHHHhccCccceeeeHhHHHHHHHHHHhccC--cccchHHHHHHHHHHhcCCc-cccccH-HHHHHHHHHHhcccc
Confidence 34778888888889999999999999997753222 11222335667777777776 455543 344443332111111
Q ss_pred H-HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH-hcCChHHHHHHhcccCChhHHHHHHHHHHhhh
Q 037562 318 K-VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVL-SQGALIPLLAELNENANLSMLRTATWTLFNFC 395 (670)
Q Consensus 318 ~-~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~ 395 (670)
+ .+--.+++|.+-.-+...++..|...+.-|..+-.. |. .+.+- -...++.|++.+ .+.+.+++..+-.++.++.
T Consensus 160 ~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P~-~~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL 236 (675)
T KOG0212|consen 160 ASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-PD-LEMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFL 236 (675)
T ss_pred ccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-Cc-HHHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHH
Confidence 1 222223445555555557888888777767666432 22 22221 113466677777 6777788876666666655
Q ss_pred cCC-CCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCcc-chhHHHHH
Q 037562 396 RGK-PQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSS-VLTPALRT 473 (670)
Q Consensus 396 ~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~-v~~~a~~~ 473 (670)
..- ..+...-....++.++.-++++++.++..|+.-+..+....+... ...-+|++..+++++.+..+. ++..+...
T Consensus 237 ~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~-l~~~s~il~~iLpc~s~~e~~~i~~~a~~~ 315 (675)
T KOG0212|consen 237 AEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDL-LLYLSGILTAILPCLSDTEEMSIKEYAQMV 315 (675)
T ss_pred HHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcch-hhhhhhhhhhcccCCCCCccccHHHHHHHH
Confidence 332 122222346678889999999999999998888877775544332 244558888999999887764 44444333
Q ss_pred H---HHhhcCCchhhHHHHhC-CChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCCh
Q 037562 474 I---RNIVKGDDFQTQCIINC-GALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEF 549 (670)
Q Consensus 474 L---~~l~~~~~~~~~~l~~~-~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 549 (670)
- ..+...... ... ++. .+++.+...+.++ ..+.|..+..-+..+-...+.+.- .....+++.|...+.+.+.
T Consensus 316 n~~l~~l~s~~~~-~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql~-~h~~~if~tLL~tLsd~sd 391 (675)
T KOG0212|consen 316 NGLLLKLVSSERL-KEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQLL-VHNDSIFLTLLKTLSDRSD 391 (675)
T ss_pred HHHHHHHHhhhhh-ccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchhh-hhccHHHHHHHHhhcCchh
Confidence 2 222221111 111 222 3577888888888 888888887666666443333222 2245688999999999999
Q ss_pred hHHHHHHHHHHHhcCCCC
Q 037562 550 DTKKEAAWAISNATKFGT 567 (670)
Q Consensus 550 ~v~~~a~~aL~~l~~~~~ 567 (670)
+|...+...+.+++....
T Consensus 392 ~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 392 EVVLLALSLLASICSSSN 409 (675)
T ss_pred HHHHHHHHHHHHHhcCcc
Confidence 999999999999998643
No 93
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=98.47 E-value=8e-05 Score=75.38 Aligned_cols=249 Identities=22% Similarity=0.268 Sum_probs=177.5
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 037562 281 GVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRD 360 (670)
Q Consensus 281 g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 360 (670)
..++.+.+++.+.+ ..++..|+..++.+.. ...++.+..++.+.++.+|..|+.+|+.+- .+.
T Consensus 43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~~~--- 105 (335)
T COG1413 43 EAADELLKLLEDED-LLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG--DPE--- 105 (335)
T ss_pred hhHHHHHHHHcCCC-HHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC--Chh---
Confidence 36788899999997 8999999999888765 346899999999999999999999999873 222
Q ss_pred HHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCCh------------hHHHHH
Q 037562 361 LVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDE------------EVLTDA 428 (670)
Q Consensus 361 ~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~------------~v~~~a 428 (670)
.++.++..+..+.+..++..+.++|..+-... .+..++..+++... .++..+
T Consensus 106 ------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 106 ------AVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred ------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 58889999966788899999999999888753 35667777766542 355555
Q ss_pred HHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchh
Q 037562 429 CWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEES 508 (670)
Q Consensus 429 l~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~ 508 (670)
+..++.+... ..++.+...+.+.+..+|..|..+++.+.... ..+.+.+...+.+. +..
T Consensus 170 ~~~l~~~~~~-----------~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~ 228 (335)
T COG1413 170 AEALGELGDP-----------EAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE 228 (335)
T ss_pred HHHHHHcCCh-----------hhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence 5555554321 34567778888877788888888888887643 23456677777777 888
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhcc
Q 037562 509 IKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLL 588 (670)
Q Consensus 509 v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~ 588 (670)
+|..++.+++.+-.. ..+..+...+.+.+..++..+..++...-. . .....+...+.
T Consensus 229 vr~~~~~~l~~~~~~-----------~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~---~---------~~~~~l~~~~~ 285 (335)
T COG1413 229 VRKAALLALGEIGDE-----------EAVDALAKALEDEDVILALLAAAALGALDL---A---------EAALPLLLLLI 285 (335)
T ss_pred HHHHHHHHhcccCcc-----------hhHHHHHHHHhccchHHHHHHHHHhcccCc---h---------hhHHHHHHHhh
Confidence 888888888777332 234566777777777777766666652211 1 12444555566
Q ss_pred CCChHHHHHHHHHHHHHH
Q 037562 589 CADPKIVTVCLEGLENIL 606 (670)
Q Consensus 589 ~~~~~v~~~a~~~l~~l~ 606 (670)
+.+..++..+..++..+.
T Consensus 286 ~~~~~~~~~~~~~l~~~~ 303 (335)
T COG1413 286 DEANAVRLEAALALGQIG 303 (335)
T ss_pred cchhhHHHHHHHHHHhhc
Confidence 666677766666665543
No 94
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.47 E-value=4.6e-07 Score=89.94 Aligned_cols=135 Identities=21% Similarity=0.300 Sum_probs=86.0
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM 102 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L 102 (670)
++..|.|++| +|+.+|. ..++|++|.+++|.+|..+|... .++|++|.|++|.+++.+ + ++|+.|
T Consensus 53 ~l~~L~Is~c-~L~sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL---P-----~sLe~L 117 (426)
T PRK15386 53 ASGRLYIKDC-DIESLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL---P-----ESVRSL 117 (426)
T ss_pred CCCEEEeCCC-CCcccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc---c-----cccceE
Confidence 7888888888 6777762 34578888888888887766432 357888888888777654 1 346666
Q ss_pred cccc--ccccceeccccccccccccccccccccccccccccccccccCCcccCC-CCccEEeEecCCCccccccCCcCCC
Q 037562 103 EIES--CDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTF-PSLEILVVNYCPNMKIFSGGELSTP 179 (670)
Q Consensus 103 ~i~~--c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~L~~L~i~~C~~l~~~p~~~~~~~ 179 (670)
.+.+ |..+..+ .++|+.|.+.+......... ...+ ++|+.|.+.+|..+. +|.++ ++
T Consensus 118 ~L~~n~~~~L~~L--------------PssLk~L~I~~~n~~~~~~l---p~~LPsSLk~L~Is~c~~i~-LP~~L--P~ 177 (426)
T PRK15386 118 EIKGSATDSIKNV--------------PNGLTSLSINSYNPENQARI---DNLISPSLKTLSLTGCSNII-LPEKL--PE 177 (426)
T ss_pred EeCCCCCcccccC--------------cchHhheecccccccccccc---ccccCCcccEEEecCCCccc-Ccccc--cc
Confidence 6642 2223222 34678887754332211111 1123 579999999999764 56543 36
Q ss_pred CccceeeeeccCC
Q 037562 180 NLHKVQLSRWDGE 192 (670)
Q Consensus 180 ~L~~l~i~~~~~~ 192 (670)
+|+.|+++.....
T Consensus 178 SLk~L~ls~n~~~ 190 (426)
T PRK15386 178 SLQSITLHIEQKT 190 (426)
T ss_pred cCcEEEecccccc
Confidence 9999988654333
No 95
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=0.00013 Score=67.84 Aligned_cols=270 Identities=14% Similarity=0.158 Sum_probs=176.5
Q ss_pred hHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhh-hhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHH
Q 037562 368 LIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQV-RPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAV 446 (670)
Q Consensus 368 i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~ 446 (670)
...++.++ .+.++.++..|...+..++.. +....... ...++.+.+++...++ ...|+.++.|++.... ....+
T Consensus 5 l~elv~ll-~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~-l~~~l 79 (353)
T KOG2973|consen 5 LVELVELL-HSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEE-LRKKL 79 (353)
T ss_pred HHHHHHHh-ccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHH-HHHHH
Confidence 34567777 788899999999999888877 22222222 4567888889887776 7788999999997643 44556
Q ss_pred HHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHH--h----CCChHHHHHhhccCCchh-HHHHHHHHHHH
Q 037562 447 IEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCII--N----CGALPYFLDMLVHNHEES-IKKEVSWIISN 519 (670)
Q Consensus 447 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~--~----~~~~~~L~~~l~~~~~~~-v~~~a~~~L~~ 519 (670)
++. ++..++..+.++.......++..+.|++...+.....+. . .|.+.......+.+.+.. --...+.+++|
T Consensus 80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n 158 (353)
T KOG2973|consen 80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN 158 (353)
T ss_pred HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence 665 888899999988888999999999999986654433222 2 455555555555442211 12345667777
Q ss_pred hhcCCHHHHHHHHhcCChH--HHHHHhhcCChhHHH-HHHHHHHHhcCCCCHHHHHHHHHcCCcHHH-------------
Q 037562 520 ITCGNREQIQAVIDSGLIG--PIVNLLQNTEFDTKK-EAAWAISNATKFGTHEQIKHLVREGCVKPL------------- 583 (670)
Q Consensus 520 l~~~~~~~~~~l~~~~~i~--~L~~ll~~~~~~v~~-~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L------------- 583 (670)
++.. +..+..+.+...++ .+.. +.+.+..+|+ ..++.|.|++.. ......++. ..+..|
T Consensus 159 ls~~-~~gR~l~~~~k~~p~~kll~-ft~~~s~vRr~GvagtlkN~cFd--~~~h~~lL~-e~~~lLp~iLlPlagpee~ 233 (353)
T KOG2973|consen 159 LSQF-EAGRKLLLEPKRFPDQKLLP-FTSEDSQVRRGGVAGTLKNCCFD--AKLHEVLLD-ESINLLPAILLPLAGPEEL 233 (353)
T ss_pred Hhhh-hhhhhHhcchhhhhHhhhhc-ccccchhhhccchHHHHHhhhcc--chhHHHHhc-chHHHHHHHHhhcCCcccc
Confidence 7553 44455555544322 2222 2334555554 567777776653 222222222 111111
Q ss_pred -----------Hhhc-----cCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHh-hcCCC
Q 037562 584 -----------CDLL-----LCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENL-QSHDD 646 (670)
Q Consensus 584 -----------~~ll-----~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L-~~~~~ 646 (670)
.+++ ..++++++...+.+|..++.- ...++.++.-|+...+..+ ...++
T Consensus 234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT--------------~~GRe~lR~kgvYpilRElhk~e~d 299 (353)
T KOG2973|consen 234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT--------------RAGREVLRSKGVYPILRELHKWEED 299 (353)
T ss_pred CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh--------------hHhHHHHHhcCchHHHHHHhcCCCc
Confidence 1333 356789999999998877642 2357889999999999888 55688
Q ss_pred HHHHHHHHHHHHHhcC
Q 037562 647 NGISEKAVEILETYWS 662 (670)
Q Consensus 647 ~~v~~~a~~~l~~~~~ 662 (670)
++++..+.++.+....
T Consensus 300 ed~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 300 EDIREACEQVVQMLVR 315 (353)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999888876654
No 96
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.41 E-value=9.8e-05 Score=74.14 Aligned_cols=308 Identities=16% Similarity=0.103 Sum_probs=195.0
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCCh-hHHHHHHHHHHhhhcCCCCCCh
Q 037562 325 AVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANL-SMLRTATWTLFNFCRGKPQPPF 403 (670)
Q Consensus 325 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~-~~~~~a~~~L~~l~~~~~~~~~ 403 (670)
..+.+..++-+++.+++..+.+++..+..+... -..+.+.+.-.-++.-+..+.+. .=+.+|...+..+..... ...
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~-~~~ 103 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKK-GPK 103 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcC-Ccc
Confidence 444555444455599999999999998876554 45566666544455556444333 346688888888887632 223
Q ss_pred hhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCch
Q 037562 404 NQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDF 483 (670)
Q Consensus 404 ~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 483 (670)
....+++..++.+..+.++..+..++.+++.++-.+++ .+...|++..+...+.++..++....+.++..+.. .+.
T Consensus 104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd-~p~ 179 (371)
T PF14664_consen 104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD-SPR 179 (371)
T ss_pred cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC-Ccc
Confidence 34578889999999999999999999999999977664 47788999999999988766677778888888876 344
Q ss_pred hhHHHHhCCChHHHHHhhccC------Cch--hHHHHHHHHHHHhhcCCHHHHHHHHhc-CChHHHHHHhhcCChhHHHH
Q 037562 484 QTQCIINCGALPYFLDMLVHN------HEE--SIKKEVSWIISNITCGNREQIQAVIDS-GLIGPIVNLLQNTEFDTKKE 554 (670)
Q Consensus 484 ~~~~l~~~~~~~~L~~~l~~~------~~~--~v~~~a~~~L~~l~~~~~~~~~~l~~~-~~i~~L~~ll~~~~~~v~~~ 554 (670)
.++.+...--++.++..+.+. .+. +.-..+..++..+...-+-......+. ..+..|++.+..+++++|..
T Consensus 180 tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~ 259 (371)
T PF14664_consen 180 TRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKA 259 (371)
T ss_pred hhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHH
Confidence 444444333455555554333 122 234455556665544322221111222 46888999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHH------cCCcHHHHhhc---c----------CCChHHHHHHHHHHHHHHHhhhhhhcc
Q 037562 555 AAWAISNATKFGTHEQIKHLVR------EGCVKPLCDLL---L----------CADPKIVTVCLEGLENILKVGVAEMNT 615 (670)
Q Consensus 555 a~~aL~~l~~~~~~~~~~~l~~------~~~i~~L~~ll---~----------~~~~~v~~~a~~~l~~l~~~~~~~~~~ 615 (670)
....+..+..-..+.-...+.. -|-+..-.++. . ....++...-...
T Consensus 260 Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aL-------------- 325 (371)
T PF14664_consen 260 ILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLAL-------------- 325 (371)
T ss_pred HHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHH--------------
Confidence 9999999887543321111111 11110000000 0 0011111111111
Q ss_pred CCCCCCccHHHHHHHHhchHHHHHHhhcCC-CHHHHHHHHHHHHHhc
Q 037562 616 GTAVGDFNQYAQLVEEAEGLEKIENLQSHD-DNGISEKAVEILETYW 661 (670)
Q Consensus 616 ~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~-~~~v~~~a~~~l~~~~ 661 (670)
....+.++|.++.|.++..+. ++.+..+|.-+|.+++
T Consensus 326 ---------ll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 326 ---------LLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred ---------HHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 234577999999998886655 8899999999888775
No 97
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=6.8e-06 Score=83.69 Aligned_cols=219 Identities=12% Similarity=0.120 Sum_probs=149.6
Q ss_pred HHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC-----hHHH-H
Q 037562 371 LLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGT-----NDKV-Q 444 (670)
Q Consensus 371 Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~-----~~~~-~ 444 (670)
++.+. .+.|..|+.+|+..+..|.... .....+....++++.+++..||..|+..+...+... .+.. .
T Consensus 203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~ 276 (823)
T KOG2259|consen 203 LIYLE-HDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE 276 (823)
T ss_pred HHHHh-cCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 55555 7888899999999998888753 222446677889999999999999977666554322 1111 1
Q ss_pred HHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHh--hc
Q 037562 445 AVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNI--TC 522 (670)
Q Consensus 445 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l--~~ 522 (670)
.+.+ .++..+...+.+.+..||..|+.+++.+-.-..+...+..+..++..+-..=.. .+......++- ++
T Consensus 277 kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~a------hkrpk~l~s~GewSs 349 (823)
T KOG2259|consen 277 KLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTA------HKRPKALYSSGEWSS 349 (823)
T ss_pred hhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhc------ccchHHHHhcCCccc
Confidence 2333 678889999999999999999999998876555544444333222211111000 00011111111 11
Q ss_pred -----------CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCC
Q 037562 523 -----------GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCAD 591 (670)
Q Consensus 523 -----------~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 591 (670)
..++....++..|.-..++.-++++=.+||+.|+..++.++.. +|.+... .++.|++++.++.
T Consensus 350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s-sP~FA~~-----aldfLvDMfNDE~ 423 (823)
T KOG2259|consen 350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS-SPGFAVR-----ALDFLVDMFNDEI 423 (823)
T ss_pred CccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC-CCCcHHH-----HHHHHHHHhccHH
Confidence 1122334567778888888888888889999999999999986 5555544 7899999999999
Q ss_pred hHHHHHHHHHHHHHHHh
Q 037562 592 PKIVTVCLEGLENILKV 608 (670)
Q Consensus 592 ~~v~~~a~~~l~~l~~~ 608 (670)
.+||..|+.+|..|...
T Consensus 424 ~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 424 EVVRLKAIFALTMISVH 440 (823)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988765
No 98
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=0.0001 Score=75.57 Aligned_cols=346 Identities=15% Similarity=0.105 Sum_probs=209.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHH
Q 037562 283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362 (670)
Q Consensus 283 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 362 (670)
.|.+-+.|++..+..++....-.-+.++.+-....... ..++..+..-+..+++.+++....+|..+.........
T Consensus 57 ~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~--~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~-- 132 (569)
T KOG1242|consen 57 KPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRP--ISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG-- 132 (569)
T ss_pred HHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcch--hHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH--
Confidence 34444555544335666666655555555322222222 23577888888999999999988888777532211100
Q ss_pred HhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHH-HHHHH----HHhcc
Q 037562 363 LSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTD-ACWAL----SYLSD 437 (670)
Q Consensus 363 ~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~-al~~L----~~l~~ 437 (670)
..+.+-+.+++ ...+..-+..+.+.++.+..+. ........+.+..+...+.+........ ++.+. .++..
T Consensus 133 --~~~l~~l~~ll-~~~~~~~~~~aa~~~ag~v~g~-~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~ 208 (569)
T KOG1242|consen 133 --EYVLELLLELL-TSTKIAERAGAAYGLAGLVNGL-GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGP 208 (569)
T ss_pred --HHHHHHHHHHh-ccccHHHHhhhhHHHHHHHcCc-HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCC
Confidence 01244555666 5777788889999999998875 2223334677788888887665443332 22222 22221
Q ss_pred CChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCch-hhHHHHhCCChHHHHHhhccCCchhHHHHHHHH
Q 037562 438 GTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDF-QTQCIINCGALPYFLDMLVHNHEESIKKEVSWI 516 (670)
Q Consensus 438 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~ 516 (670)
..+.. + ..+++.+.....+....+|..|..+...+....+. ..+ -+++.++.-+... ....+..++..
T Consensus 209 ~~EPy---i--v~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK-----~llpsll~~l~~~-kWrtK~aslel 277 (569)
T KOG1242|consen 209 PFEPY---I--VPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK-----LLLPSLLGSLLEA-KWRTKMASLEL 277 (569)
T ss_pred CCCch---H--HhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh-----HhhhhhHHHHHHH-hhhhHHHHHHH
Confidence 11111 1 13556666666677788999888887776654332 222 2345555555555 56778889999
Q ss_pred HHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHH--------------------
Q 037562 517 ISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVR-------------------- 576 (670)
Q Consensus 517 L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~-------------------- 576 (670)
++.++...+.+..... ..++|.+.+.+.+..+++|+.+..++.++...-+...+..++.
T Consensus 278 lg~m~~~ap~qLs~~l-p~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L 356 (569)
T KOG1242|consen 278 LGAMADCAPKQLSLCL-PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSL 356 (569)
T ss_pred HHHHHHhchHHHHHHH-hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhh
Confidence 9988777677665554 4699999999999999999999999999887543222222111
Q ss_pred --cC------------CcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhh
Q 037562 577 --EG------------CVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQ 642 (670)
Q Consensus 577 --~~------------~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~ 642 (670)
.. .++.|.+-+...+..+.+.+..++.+++..-+.... ..+|...+ ++.+..-.
T Consensus 357 ~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~-------lapfl~~L-----lp~lk~~~ 424 (569)
T KOG1242|consen 357 GATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKD-------LAPFLPSL-----LPGLKENL 424 (569)
T ss_pred cceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHH-------HhhhHHHH-----hhHHHHHh
Confidence 00 123333334455556667777777777665432221 11222222 56666666
Q ss_pred cCCCHHHHHHHHHHHHHh
Q 037562 643 SHDDNGISEKAVEILETY 660 (670)
Q Consensus 643 ~~~~~~v~~~a~~~l~~~ 660 (670)
....|++|..+.+++...
T Consensus 425 ~d~~PEvR~vaarAL~~l 442 (569)
T KOG1242|consen 425 DDAVPEVRAVAARALGAL 442 (569)
T ss_pred cCCChhHHHHHHHHHHHH
Confidence 666899999999888443
No 99
>PF05536 Neurochondrin: Neurochondrin
Probab=98.37 E-value=0.00062 Score=72.31 Aligned_cols=381 Identities=15% Similarity=0.109 Sum_probs=228.0
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCc--HHHHHHcCCHHHHHHhhcCCC------CHHHHHHHHHHHHHH
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPP--IDEVIQSGVVPRFVEFLMRQD------YPQLQFKAAWALTNI 309 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~g~l~~L~~ll~~~~------~~~v~~~a~~~L~~l 309 (670)
..+.+-+++|++.+.+-++.++-.+.++....+... .+.+.+.=+.+.+-++|.+.. ....+.-|+.+|+.+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 447788888998887888999999999877642212 234667666788888887721 156788899999999
Q ss_pred cCCChhhHHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHH
Q 037562 310 ASGTSENTKVVIDHGAVPIFVKLLASPSV-DVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTAT 388 (670)
Q Consensus 310 ~~~~~~~~~~i~~~~~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~ 388 (670)
+. +++....---.+-||.|++.+...+. .+...|..+|..++ ..+..++.+.+.|+++.|...+.+ .+.....|.
T Consensus 85 ~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al 160 (543)
T PF05536_consen 85 CR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--QSFQMEIAL 160 (543)
T ss_pred cC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHHH
Confidence 98 55554222222469999999988666 99999999999999 556678899999999999999955 456677888
Q ss_pred HHHHhhhcCCCCC----ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHH-HHHHHHc----CCHHHHHHhc
Q 037562 389 WTLFNFCRGKPQP----PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDK-VQAVIEA----GVYPRLVELL 459 (670)
Q Consensus 389 ~~L~~l~~~~~~~----~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~-~~~~~~~----~~i~~L~~lL 459 (670)
.++.+++...... .......+++.+...+.......+..++..|..+....+.. ....... .+...+..++
T Consensus 161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 8888887654321 22222456666777776666677777888888877655311 1111111 3344455556
Q ss_pred CCC-CccchhHHHHHHHHhhcCCchhhHHHH-hC-----CChHHHHHh---------------hccCCchhHH--HHHHH
Q 037562 460 GHS-SSSVLTPALRTIRNIVKGDDFQTQCII-NC-----GALPYFLDM---------------LVHNHEESIK--KEVSW 515 (670)
Q Consensus 460 ~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~-----~~~~~L~~~---------------l~~~~~~~v~--~~a~~ 515 (670)
++. .+.-|..|+...+.+..... .+-++ +. .++-.++++ .+.+...... -.+++
T Consensus 241 ~sr~~~~~R~~al~Laa~Ll~~~G--~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf 318 (543)
T PF05536_consen 241 QSRLTPSQRDPALNLAASLLDLLG--PEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCF 318 (543)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhC--hHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHH
Confidence 553 44566777777666654211 11111 11 112222211 1111011111 11111
Q ss_pred -H----HHHhhc--------CCHHHHHHHHh--cCChHHHHHHhhc------CChhHHHHHHHHHHHhcCCCCHHHHHHH
Q 037562 516 -I----ISNITC--------GNREQIQAVID--SGLIGPIVNLLQN------TEFDTKKEAAWAISNATKFGTHEQIKHL 574 (670)
Q Consensus 516 -~----L~~l~~--------~~~~~~~~l~~--~~~i~~L~~ll~~------~~~~v~~~a~~aL~~l~~~~~~~~~~~l 574 (670)
+ +..++. -.++....+.. .+.+...+..|++ .++.....++.+|+.+....+...++.+
T Consensus 319 ~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v 398 (543)
T PF05536_consen 319 SILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEV 398 (543)
T ss_pred HHHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 1 112222 12333333332 2345555666652 1233677789999888876444444444
Q ss_pred HHcCCcHHHHhhccCCCh----------HHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHH
Q 037562 575 VREGCVKPLCDLLLCADP----------KIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIEN 640 (670)
Q Consensus 575 ~~~~~i~~L~~ll~~~~~----------~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~ 640 (670)
.+.++.++++...... +.+...+=++..+... ...++.+...||.+.+.+
T Consensus 399 --~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e--------------~~gr~~l~~~~g~~~l~~ 458 (543)
T PF05536_consen 399 --YGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAE--------------EEGRKILLSNGGWKLLCD 458 (543)
T ss_pred --HHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhcc--------------HHHHHHHHhCCcHHHHHH
Confidence 3588888888854333 3444555555554432 224666777888777644
No 100
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.35 E-value=7.1e-07 Score=104.30 Aligned_cols=38 Identities=24% Similarity=0.109 Sum_probs=22.7
Q ss_pred CCCCccEEeEecCCCccccccCCcCCCCccceeeeecc
Q 037562 153 TFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRWD 190 (670)
Q Consensus 153 ~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~~~ 190 (670)
.+++|+.|++.+|.-...+|.....+++|+.|++++..
T Consensus 306 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 343 (968)
T PLN00113 306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343 (968)
T ss_pred CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCC
Confidence 45666666666665444555555556677777665443
No 101
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.31 E-value=9.9e-07 Score=103.08 Aligned_cols=40 Identities=18% Similarity=0.085 Sum_probs=30.7
Q ss_pred ccCCCCccEEeEecCCCccccccCCcCCCCccceeeeecc
Q 037562 151 AFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRWD 190 (670)
Q Consensus 151 ~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~~~ 190 (670)
...+|+|+.|++.+|.--..+|......++|+.|+++...
T Consensus 328 ~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCe
Confidence 3457889999999887655678777778899999886543
No 102
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.25 E-value=0.00021 Score=77.23 Aligned_cols=382 Identities=12% Similarity=0.074 Sum_probs=255.6
Q ss_pred HHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC
Q 037562 244 VDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDH 323 (670)
Q Consensus 244 ~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 323 (670)
-+.-++..+.++..++.-+.+++... .......++++.+.++..++. ..||+.|...+.++........ =...
T Consensus 243 ~~lc~d~~~~Vr~~~a~~l~~~a~~~----~~~~~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~--d~~~ 315 (759)
T KOG0211|consen 243 QSLCQDDTPMVRRAVASNLGNIAKVL----ESEIVKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD--DVVK 315 (759)
T ss_pred HhhccccchhhHHHHHhhhHHHHHHH----HHHHHHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch--hhhh
Confidence 33345677888999999998887653 226667889999999998888 7999999999888876221111 1223
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCC--CC
Q 037562 324 GAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKP--QP 401 (670)
Q Consensus 324 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~--~~ 401 (670)
.+.+.+++...+++..++.........+...-.. ......-+++...++ .+...+.+..++.-...++...+ ..
T Consensus 316 ~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~---~~~~~~~~~~~~~l~-~~~~~e~r~a~a~~~~~l~~~l~~~~~ 391 (759)
T KOG0211|consen 316 SLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP---SATRTQLVPPVSNLL-KDEEWEVRYAIAKKVQKLACYLNASCY 391 (759)
T ss_pred hhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc---ccCcccchhhHHHHh-cchhhhhhHHhhcchHHHhhhcCcccc
Confidence 4678889999999999988877777666532111 111112356666666 55555666666555555554432 22
Q ss_pred ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCC
Q 037562 402 PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGD 481 (670)
Q Consensus 402 ~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 481 (670)
.....+.++|.+..+..+.+..++.+.+.....+..-.+. ...+ ....+.+...+++..+.|+.+..+.+..+-..+
T Consensus 392 ~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k--~~ti-~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~ 468 (759)
T KOG0211|consen 392 PNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK--ERTI-SELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVN 468 (759)
T ss_pred cccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc--CcCc-cccChhhhhhcchhhHHHHHhhHHHHHHHHhcc
Confidence 3333456688888888888999998888877777543220 0011 145677778888888899999988887776555
Q ss_pred chhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHH
Q 037562 482 DFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISN 561 (670)
Q Consensus 482 ~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~ 561 (670)
+...........++.+..+-... ...++.+..+.+-.++.... ..+.....-+.+...+.+....+++.|+..+..
T Consensus 469 ~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~ 544 (759)
T KOG0211|consen 469 DVIGISTVSNSLLPAIVELAEDL-LWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPA 544 (759)
T ss_pred Ccccchhhhhhhhhhhhhhccch-hHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHH
Confidence 54444455566788888887777 78888888888888765321 222332334444455666678999999999988
Q ss_pred hcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHh
Q 037562 562 ATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENL 641 (670)
Q Consensus 562 l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L 641 (670)
++.....+ . .....++.+.....+++.-.|...+.++..+........ .....++.+..+
T Consensus 545 l~~~~G~~---w-~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei----------------~~~~Llp~~~~l 604 (759)
T KOG0211|consen 545 LVETFGSE---W-ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI----------------TCEDLLPVFLDL 604 (759)
T ss_pred HHHHhCcc---h-hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH----------------HHHHHhHHHHHh
Confidence 87642211 1 112356677777666678888888888887766544322 233347888899
Q ss_pred hcCCCHHHHHHHHHHHHHhcCC
Q 037562 642 QSHDDNGISEKAVEILETYWSS 663 (670)
Q Consensus 642 ~~~~~~~v~~~a~~~l~~~~~~ 663 (670)
..+..++|+-.+.+.+..+-+.
T Consensus 605 ~~D~vanVR~nvak~L~~i~~~ 626 (759)
T KOG0211|consen 605 VKDPVANVRINVAKHLPKILKL 626 (759)
T ss_pred ccCCchhhhhhHHHHHHHHHhh
Confidence 9999999999999998887554
No 103
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=6.9e-06 Score=81.57 Aligned_cols=263 Identities=13% Similarity=0.166 Sum_probs=183.4
Q ss_pred HHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccC
Q 037562 300 FKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENA 379 (670)
Q Consensus 300 ~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~ 379 (670)
.+++.+|..++..-..-|..+.+..+.+.|+++|++|+.-+...+...++|..-.-...+..+++.|++..+++.+ .+.
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v-~sK 485 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLV-MSK 485 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHh-hcc
Confidence 3455566667665566677788889999999999998888888899999999877777899999999999999999 566
Q ss_pred ChhHHHHHHHHHHhhhcCCCCC-Chhh-hhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHH---HHHHHHc---C-
Q 037562 380 NLSMLRTATWTLFNFCRGKPQP-PFNQ-VRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDK---VQAVIEA---G- 450 (670)
Q Consensus 380 ~~~~~~~a~~~L~~l~~~~~~~-~~~~-~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~---~~~~~~~---~- 450 (670)
|..++.+..|.+..+..+.... .+.. ..-++..++.+..+++-.++..++..+.|+..+...+ ....++. .
T Consensus 486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y 565 (743)
T COG5369 486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY 565 (743)
T ss_pred hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence 7799999999999999887433 2222 3567888999999999999999999999998643221 1111111 1
Q ss_pred CHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHh-CCChHHHHHhh----cc----------------------
Q 037562 451 VYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIIN-CGALPYFLDML----VH---------------------- 503 (670)
Q Consensus 451 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~~~~L~~~l----~~---------------------- 503 (670)
++..++..+...++-.....+.+|.+++..++.....+.. ...+..+..+| ..
T Consensus 566 lfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~ 645 (743)
T COG5369 566 LFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVN 645 (743)
T ss_pred HHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeec
Confidence 4566777777777766666788888877655543332221 11111111111 00
Q ss_pred --------------------------CCchhHHHHHHHHHHHhhc---CC------HHHHHHHHhcCChHHHHHHhhcCC
Q 037562 504 --------------------------NHEESIKKEVSWIISNITC---GN------REQIQAVIDSGLIGPIVNLLQNTE 548 (670)
Q Consensus 504 --------------------------~~~~~v~~~a~~~L~~l~~---~~------~~~~~~l~~~~~i~~L~~ll~~~~ 548 (670)
.++.+.-.+..|.+.|+.. +. .+.++.+.+.|+-+.+..+-.+++
T Consensus 646 l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~S 725 (743)
T COG5369 646 LSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDS 725 (743)
T ss_pred ccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCc
Confidence 1134456667788888754 11 244556667666666666666777
Q ss_pred hhHHHHHHHHHHHhc
Q 037562 549 FDTKKEAAWAISNAT 563 (670)
Q Consensus 549 ~~v~~~a~~aL~~l~ 563 (670)
..|++.+-.||.++-
T Consensus 726 l~vrek~~taL~~l~ 740 (743)
T COG5369 726 LIVREKIGTALENLR 740 (743)
T ss_pred HHHHHHHHHHHHhhh
Confidence 899999999998863
No 104
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.00053 Score=71.45 Aligned_cols=359 Identities=15% Similarity=0.149 Sum_probs=220.8
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHH
Q 037562 241 PAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVV 320 (670)
Q Consensus 241 ~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 320 (670)
..+-+-|+++++-++-..++.|+++ .. .++++ ..+|.+...|.+.. +.||.+|..++..+-.. .-..+
T Consensus 102 na~RkDLQHPNEyiRG~TLRFLckL-kE------~ELle-pl~p~IracleHrh-sYVRrNAilaifsIyk~---~~~L~ 169 (948)
T KOG1058|consen 102 NAYRKDLQHPNEYIRGSTLRFLCKL-KE------PELLE-PLMPSIRACLEHRH-SYVRRNAILAIFSIYKN---FEHLI 169 (948)
T ss_pred HHHhhhccCchHhhcchhhhhhhhc-Cc------HHHhh-hhHHHHHHHHhCcc-hhhhhhhheeehhHHhh---hhhhc
Confidence 4456667889999999999999877 21 22222 37888889999999 89999999999888652 11111
Q ss_pred HhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc--ccCChhHHHHHHHHHHhhhcC
Q 037562 321 IDHGAVPIFVKLL-ASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELN--ENANLSMLRTATWTLFNFCRG 397 (670)
Q Consensus 321 ~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~--~~~~~~~~~~a~~~L~~l~~~ 397 (670)
.++-+.+-.+| ...++..+++|...|...- ++. ++..+..... .+-+..++......+...|..
T Consensus 170 --pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D---~Er--------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~ 236 (948)
T KOG1058|consen 170 --PDAPELIESFLLTEQDPSCKRNAFLMLFTTD---PER--------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLA 236 (948)
T ss_pred --CChHHHHHHHHHhccCchhHHHHHHHHHhcC---HHH--------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhc
Confidence 12333334444 4578888888887776542 221 2233333332 223445555666666666654
Q ss_pred CCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC-CCccchhHHHHHHHH
Q 037562 398 KPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH-SSSSVLTPALRTIRN 476 (670)
Q Consensus 398 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~ 476 (670)
.|.. ....+..+..+|.+.++.++..|+.++.+++..+. .... ....++.++.. ++..++.-.+.-|..
T Consensus 237 ~p~~----~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~-alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~ 306 (948)
T KOG1058|consen 237 NPAE----KARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPT-ALKA-----AASTYIDLLVKESDNNVKLIVLDRLSE 306 (948)
T ss_pred CHHH----hhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHH-HHHH-----HHHHHHHHHHhccCcchhhhhHHHHHH
Confidence 3322 24567788889999999999999999999885533 2221 22344444433 344455444555555
Q ss_pred hhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc-CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHH
Q 037562 477 IVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC-GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEA 555 (670)
Q Consensus 477 l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 555 (670)
+...+.... .|.+--++.+|.++ +-++|+.+....-.++. .+-+.+-.+.+..+...--. =...+...|..-
T Consensus 307 l~~~~~~il-----~~l~mDvLrvLss~-dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlL 379 (948)
T KOG1058|consen 307 LKALHEKIL-----QGLIMDVLRVLSSP-DLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLL 379 (948)
T ss_pred HhhhhHHHH-----HHHHHHHHHHcCcc-cccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHH
Confidence 543222211 24555577788888 99999999988888866 33333333332111111000 001234568888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchH
Q 037562 556 AWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGL 635 (670)
Q Consensus 556 ~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 635 (670)
..++..++.. -|+.... +++.|++.+.+.++.....++..+...++..++. +..+ +
T Consensus 380 iktih~cav~-Fp~~aat-----vV~~ll~fisD~N~~aas~vl~FvrE~iek~p~L-------------r~~i-----i 435 (948)
T KOG1058|consen 380 IKTIHACAVK-FPEVAAT-----VVSLLLDFISDSNEAAASDVLMFVREAIEKFPNL-------------RASI-----I 435 (948)
T ss_pred HHHHHHHhhc-ChHHHHH-----HHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchH-------------HHHH-----H
Confidence 8888888876 4554444 7899999999999887777777777776554432 2222 2
Q ss_pred HH-HHHhhcCCCHHHHHHHHHHHHHhcCCcc
Q 037562 636 EK-IENLQSHDDNGISEKAVEILETYWSSRV 665 (670)
Q Consensus 636 ~~-l~~L~~~~~~~v~~~a~~~l~~~~~~~~ 665 (670)
+. ++.+-.-.+..+..-|.|++.+|...+.
T Consensus 436 ~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 436 EKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred HHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 33 3444455677888899999999986654
No 105
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=7e-05 Score=76.59 Aligned_cols=254 Identities=13% Similarity=0.087 Sum_probs=170.7
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC------C
Q 037562 326 VPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK------P 399 (670)
Q Consensus 326 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~------~ 399 (670)
...++.+..+.+..|+.+|+.+|..+..+.. ..+. ......+++ .+.+..++..|...++-..... .
T Consensus 200 ~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~k-L~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 200 ARGLIYLEHDQDFRVRTHAVEGLLALSEGFK-LSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred HHHHHHHhcCCCcchHHHHHHHHHhhccccc-ccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 3447788888999999999999988875332 2222 244556677 7777889887765554444332 1
Q ss_pred CCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHh--
Q 037562 400 QPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI-- 477 (670)
Q Consensus 400 ~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l-- 477 (670)
.........++..+-..+.+-+-.||..|..+|+.+..-+++..+..++..++..+-..-. -.+..-...++-
T Consensus 273 ~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~-----ahkrpk~l~s~Gew 347 (823)
T KOG2259|consen 273 SEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRT-----AHKRPKALYSSGEW 347 (823)
T ss_pred hhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhh-----cccchHHHHhcCCc
Confidence 2233344677888888898888999999999999988777777666666444442211100 000000111111
Q ss_pred hc-----------CCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhc
Q 037562 478 VK-----------GDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQN 546 (670)
Q Consensus 478 ~~-----------~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~ 546 (670)
+. ..+.....++..|+-..++.-+.++ -.+||+.|+..++.++...|.... ..+..|++++.+
T Consensus 348 SsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfND 421 (823)
T KOG2259|consen 348 SSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFND 421 (823)
T ss_pred ccCccccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhcc
Confidence 10 1223344577889999999999988 889999999999999987666432 356789999999
Q ss_pred CChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHH
Q 037562 547 TEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLEN 604 (670)
Q Consensus 547 ~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~ 604 (670)
+...||..|..+|..++.+.. ++...++.+.+.+.+.++++|......|.+
T Consensus 422 E~~~VRL~ai~aL~~Is~~l~-------i~eeql~~il~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 422 EIEVVRLKAIFALTMISVHLA-------IREEQLRQILESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHHHHHHHHHHHHHHHhe-------ecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999999999999999987521 233356677777777788877766555543
No 106
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.14 E-value=0.00029 Score=70.84 Aligned_cols=318 Identities=13% Similarity=0.099 Sum_probs=195.4
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhH
Q 037562 282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSVDVRKQTVWALGNVAGDSPRCR 359 (670)
Q Consensus 282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~ 359 (670)
..+.+..++-+++ .+++..+.+++..+.. +++..+.+.+.++--.++.-|.. .+..-|++|+..+..+.......+
T Consensus 26 ~~~~i~~~lL~~~-~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~ 103 (371)
T PF14664_consen 26 FGERIQCMLLSDS-KEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK 103 (371)
T ss_pred HHHHHHHHHCCCc-HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc
Confidence 3444554555666 7999999999999988 77888888887766666666654 456678899999888874422111
Q ss_pred HHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 037562 360 DLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGT 439 (670)
Q Consensus 360 ~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~ 439 (670)
-+..|++..++... .+.+...+..+..+|..++-.+ +......|++..+...+.++..++...++.++..+.+.+
T Consensus 104 --~~~~~vvralvaia-e~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p 178 (371)
T PF14664_consen 104 --EIPRGVVRALVAIA-EHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSP 178 (371)
T ss_pred --cCCHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCc
Confidence 12445678888888 6677789999999999999874 344555889999999988776678888999999988765
Q ss_pred hHHHHHHHHcCCHHHHHHhcCCC-------Cc--cchhHHHHHHHHhhcCCchhhHHHHhC-CChHHHHHhhccCCchhH
Q 037562 440 NDKVQAVIEAGVYPRLVELLGHS-------SS--SVLTPALRTIRNIVKGDDFQTQCIINC-GALPYFLDMLVHNHEESI 509 (670)
Q Consensus 440 ~~~~~~~~~~~~i~~L~~lL~~~-------~~--~v~~~a~~~L~~l~~~~~~~~~~l~~~-~~~~~L~~~l~~~~~~~v 509 (670)
..+ +.+...--++.++.-..+. +. +....+..++..+-..-+.......+. .++..|+..|..+ .+++
T Consensus 179 ~tR-~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p-~~~i 256 (371)
T PF14664_consen 179 RTR-KYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLP-NPEI 256 (371)
T ss_pred chh-hhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCC-CHHH
Confidence 533 2222212233333333222 11 233445566666655444332222222 5788899999998 8889
Q ss_pred HHHHHHHHHHhhc-CCHHHHHHH------HhcCChHHHHHHh---hcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCC
Q 037562 510 KKEVSWIISNITC-GNREQIQAV------IDSGLIGPIVNLL---QNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGC 579 (670)
Q Consensus 510 ~~~a~~~L~~l~~-~~~~~~~~l------~~~~~i~~L~~ll---~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~ 579 (670)
|+.....+..+.. ..+...... ...+-+..--++- ..+.......+ .-=.++..+.-.--...|++.|.
T Consensus 257 r~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~-~~~~~l~~~y~aLll~ili~~gL 335 (371)
T PF14664_consen 257 RKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRS-SKRPNLVNHYLALLLAILIEAGL 335 (371)
T ss_pred HHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccc-cccccHHHHHHHHHHHHHHHcCh
Confidence 9999988888866 222111111 1111110000000 00000000000 00001111101112345678999
Q ss_pred cHHHHhhccCC-ChHHHHHHHHHHHHHHHhh
Q 037562 580 VKPLCDLLLCA-DPKIVTVCLEGLENILKVG 609 (670)
Q Consensus 580 i~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~ 609 (670)
++.|+++..+. ++.+..+|.-.|+.++...
T Consensus 336 ~~~L~~li~~~~d~~l~~KAtlLL~elL~la 366 (371)
T PF14664_consen 336 LEALVELIESSEDSSLSRKATLLLGELLHLA 366 (371)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 99999999876 8889999999999888654
No 107
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.14 E-value=5e-05 Score=61.35 Aligned_cols=130 Identities=20% Similarity=0.170 Sum_probs=109.4
Q ss_pred ccHHHHHHHhc-CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 037562 238 EILPAMVDGVW-SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN 316 (670)
Q Consensus 238 ~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~ 316 (670)
+-+..|+...+ ..+.+.+.+....|.|.+.+ +.+...+.+.+++..++..+..++ ..+.+.++..|+|++. ++.+
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD--P~Nys~Lrql~vLdlFvdsl~e~n-e~LvefgIgglCNlC~-d~~n 91 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYD--PINYSHLRQLDVLDLFVDSLEEQN-ELLVEFGIGGLCNLCL-DKTN 91 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccC--cchHHHHHHhhHHHHHHHHhhccc-HHHHHHhHHHHHhhcc-ChHH
Confidence 33566666655 56778888888899999876 677888999999999999999999 8999999999999998 8999
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHh
Q 037562 317 TKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAEL 375 (670)
Q Consensus 317 ~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l 375 (670)
.+.|.++++++.++..+.++.......|+.++..++...-..++.+.. +++++.+
T Consensus 92 ~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~----p~Vv~~v 146 (173)
T KOG4646|consen 92 AKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS----PAVVRTV 146 (173)
T ss_pred HHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc----HHHHHHH
Confidence 999999999999999999999999999999999999766666666643 4555554
No 108
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.14 E-value=0.00018 Score=67.13 Aligned_cols=239 Identities=17% Similarity=0.134 Sum_probs=149.5
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC--CCccchhHHHHHHHHhhcCCchhhHHH
Q 037562 411 PVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH--SSSSVLTPALRTIRNIVKGDDFQTQCI 488 (670)
Q Consensus 411 ~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l 488 (670)
..|-++++.-++-.+.-|+.++.++....+.+.....+...-..++..+++ +..+++...+.+++.++... ..++.+
T Consensus 152 eyLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~-~~aqdi 230 (432)
T COG5231 152 EYLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSK-ECAQDI 230 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCH-HHHHHH
Confidence 334455555566678889999999987655444444555566678888877 45678999999999998743 323211
Q ss_pred H-hCCChHHHHHhhccCCchhHHHHHHHHHHHhhcC-CHHHHHHHHhcC-ChHHHHHHhh--cCChhHHHHHHHHHHHhc
Q 037562 489 I-NCGALPYFLDMLVHNHEESIKKEVSWIISNITCG-NREQIQAVIDSG-LIGPIVNLLQ--NTEFDTKKEAAWAISNAT 563 (670)
Q Consensus 489 ~-~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~-~i~~L~~ll~--~~~~~v~~~a~~aL~~l~ 563 (670)
- -...+.-++++.+......|-+-++.++.|++.. ....+..+.-.| +.+..--+.+ -.|++++...-..=..+.
T Consensus 231 ~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~ 310 (432)
T COG5231 231 DKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLV 310 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 1 1245666777776654667888899999999873 334444444334 4444443433 234554443322222221
Q ss_pred CCC--------------------C---------HHHHHHHHHc--CCcHHHHhhccCCChH-HHHHHHHHHHHHHHhhhh
Q 037562 564 KFG--------------------T---------HEQIKHLVRE--GCVKPLCDLLLCADPK-IVTVCLEGLENILKVGVA 611 (670)
Q Consensus 564 ~~~--------------------~---------~~~~~~l~~~--~~i~~L~~ll~~~~~~-v~~~a~~~l~~l~~~~~~ 611 (670)
... + ..+...+.+. .++..|..+++..++. ....|+.-+..+++..++
T Consensus 311 ~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE 390 (432)
T COG5231 311 QNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE 390 (432)
T ss_pred hhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch
Confidence 110 0 1123333332 2466777777766665 344555666666655443
Q ss_pred hhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 037562 612 EMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYWSS 663 (670)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~~~ 663 (670)
....+...|+-+.|-+|.+|++++|+..|.++++.+.++
T Consensus 391 -------------~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~ 429 (432)
T COG5231 391 -------------INAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS 429 (432)
T ss_pred -------------HHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence 466788999999999999999999999999999887654
No 109
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.0063 Score=63.30 Aligned_cols=347 Identities=16% Similarity=0.154 Sum_probs=204.2
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHH
Q 037562 284 PRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSVDVRKQTVWALGNVAGDSPRCRDL 361 (670)
Q Consensus 284 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~ 361 (670)
..+.+=|.+.+ +.....|+.+++|+.. .+.+..+.. -|+ ++|.+ ..+-++..|+-+|..+....|..
T Consensus 114 n~iknDL~srn-~~fv~LAL~~I~niG~--re~~ea~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~spDl--- 182 (938)
T KOG1077|consen 114 NSIKNDLSSRN-PTFVCLALHCIANIGS--REMAEAFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSPDL--- 182 (938)
T ss_pred HHHHhhhhcCC-cHHHHHHHHHHHhhcc--HhHHHHhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCccc---
Confidence 33444455666 6888889999999965 455555432 233 55555 44678888888998888776653
Q ss_pred HHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhc-------------cCChhHHHHH
Q 037562 362 VLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIR-------------SNDEEVLTDA 428 (670)
Q Consensus 362 i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~-------------~~~~~v~~~a 428 (670)
+--.+....++.+| ++.+..+...+...+..++...+..-......++..|..... -+.|-++..+
T Consensus 183 ~~~~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl 261 (938)
T KOG1077|consen 183 VNPGEWAQRIVHLL-DDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKL 261 (938)
T ss_pred cChhhHHHHHHHHh-CccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHH
Confidence 22223477888888 666677777788888888877654433333444444433332 1346778888
Q ss_pred HHHHHHhccCChHHHH-HHHHcCCHHHHHHhcCCC--Cccc-----hhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHh
Q 037562 429 CWALSYLSDGTNDKVQ-AVIEAGVYPRLVELLGHS--SSSV-----LTPALRTIRNIVKGDDFQTQCIINCGALPYFLDM 500 (670)
Q Consensus 429 l~~L~~l~~~~~~~~~-~~~~~~~i~~L~~lL~~~--~~~v-----~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~ 500 (670)
+++|.+.-...+.-.. .+. .+++.++...+.. ..++ +...+.-.-+++.+-+..-..+. ..+..|-++
T Consensus 262 ~rlLq~~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~f 337 (938)
T KOG1077|consen 262 LRLLQIYPTPEDPSTRARLN--EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQF 337 (938)
T ss_pred HHHHHhCCCCCCchHHHHHH--HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHH
Confidence 8888887533332222 122 2444455444421 1112 22222223334433332222222 357788899
Q ss_pred hccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh-cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCC
Q 037562 501 LVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ-NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGC 579 (670)
Q Consensus 501 l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~ 579 (670)
+.+. ...+|.-|...++.++.... ....+..+ .+.++..|+ ..|..+|+.|+..|..++.. ++.+. +
T Consensus 338 ls~r-E~NiRYLaLEsm~~L~ss~~-s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~---~Nak~-----I 405 (938)
T KOG1077|consen 338 LSHR-ETNIRYLALESMCKLASSEF-SIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV---SNAKQ-----I 405 (938)
T ss_pred hhcc-cccchhhhHHHHHHHHhccc-hHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch---hhHHH-----H
Confidence 9888 88999999999999877422 22222222 677788888 77899999999999999976 34444 5
Q ss_pred cHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhch------HHHHHHhhcCCCHHHHHHH
Q 037562 580 VKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEG------LEKIENLQSHDDNGISEKA 653 (670)
Q Consensus 580 i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~------~~~l~~L~~~~~~~v~~~a 653 (670)
+.-|.+++.+.++.+++...--+..+.+....+.. =......+.++-+|- +-++.++ -..+++++.+|
T Consensus 406 V~elLqYL~tAd~sireeivlKvAILaEKyAtDy~-----WyVdviLqLiriagd~vsdeVW~RvvQi-VvNnedlq~ya 479 (938)
T KOG1077|consen 406 VAELLQYLETADYSIREEIVLKVAILAEKYATDYS-----WYVDVILQLIRIAGDYVSDEVWYRVVQI-VVNNEDLQGYA 479 (938)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcc-----hhHHHHHHHHHHhcccccHHHHHHhhee-EecchhhhHHH
Confidence 67788888888887776543333323222111110 011223344444432 2222222 34567888888
Q ss_pred HHHHHHhcCCc
Q 037562 654 VEILETYWSSR 664 (670)
Q Consensus 654 ~~~l~~~~~~~ 664 (670)
.+-+-.|.+..
T Consensus 480 ak~~fe~Lq~~ 490 (938)
T KOG1077|consen 480 AKRLFEYLQKP 490 (938)
T ss_pred HHHHHHHHhhh
Confidence 87777776544
No 110
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.08 E-value=0.0033 Score=65.29 Aligned_cols=348 Identities=14% Similarity=0.116 Sum_probs=199.5
Q ss_pred HHHHHHHhcCCCh---HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 037562 240 LPAMVDGVWSDDN---SLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN 316 (670)
Q Consensus 240 i~~l~~~l~~~~~---~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~ 316 (670)
+|.+++.|.+++. ......+.+|..++.. .+..+.+.. .++..+-...+.....+....++.++..+.......
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~--~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~ 77 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTS--PQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQED 77 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCC--hhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccc
Confidence 3677788875544 5667788888888654 332333222 445555555544333677777888888876533222
Q ss_pred -----HHHHHhCCChHHHHHhhCC-----C--CHHHHHHHHHHHHHhhCCCchh-HHHHHhcCChHHHHHHhc-------
Q 037562 317 -----TKVVIDHGAVPIFVKLLAS-----P--SVDVRKQTVWALGNVAGDSPRC-RDLVLSQGALIPLLAELN------- 376 (670)
Q Consensus 317 -----~~~i~~~~~i~~L~~lL~~-----~--~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~~~i~~Ll~~l~------- 376 (670)
.....+..+++.+.++.-. . ++.+...+...+..+...-+.. ++.+ +..+..+..
T Consensus 78 ~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~-----~~~~~~lf~~~~~~~~ 152 (415)
T PF12460_consen 78 KQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEI-----LDELYSLFLSPKSFSP 152 (415)
T ss_pred cccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHH-----HHHHHHHHccccccCC
Confidence 2233344467777775532 1 2455566666666665443332 2222 333333332
Q ss_pred ---ccC-ChhHHHHHHHHH-HhhhcCCCCCChhhhhhhHHHHHHhhcc-CChhHHHHHHHHHHHhccCC--hHHHHHHHH
Q 037562 377 ---ENA-NLSMLRTATWTL-FNFCRGKPQPPFNQVRPALPVLAQLIRS-NDEEVLTDACWALSYLSDGT--NDKVQAVIE 448 (670)
Q Consensus 377 ---~~~-~~~~~~~a~~~L-~~l~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~al~~L~~l~~~~--~~~~~~~~~ 448 (670)
... ...........+ +-++.-++..........+..++.+..+ .++..+..++.+++.++..- ++...
T Consensus 153 ~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~---- 228 (415)
T PF12460_consen 153 FQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD---- 228 (415)
T ss_pred CCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH----
Confidence 000 001111121122 2233322333222334577777776554 46888889999998888652 22222
Q ss_pred cCCHHHHHHhc-CCCCccchhHHHHHHHHhhc-----CCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc
Q 037562 449 AGVYPRLVELL-GHSSSSVLTPALRTIRNIVK-----GDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC 522 (670)
Q Consensus 449 ~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~-----~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 522 (670)
+++..+...+ ...+...+..++.++.-++. +++... ..+..|++++.+ +++...|+.++.-+..
T Consensus 229 -~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~------~~~~~L~~lL~~---~~~g~~aA~~f~il~~ 298 (415)
T PF12460_consen 229 -EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT------ELLDKLLELLSS---PELGQQAAKAFGILLS 298 (415)
T ss_pred -HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH------HHHHHHHHHhCC---hhhHHHHHHHHhhHhc
Confidence 2333444444 33445556666655544432 222221 246667787765 4778888888888876
Q ss_pred CCHH--------HHHHHHhcC----ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCC
Q 037562 523 GNRE--------QIQAVIDSG----LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCA 590 (670)
Q Consensus 523 ~~~~--------~~~~l~~~~----~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~ 590 (670)
..++ .++.+.+.. ++|.|++-.+..+.+.+.....||.++..+-....... --...+|.|++.++.+
T Consensus 299 d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~-~l~~LlPLLlqsL~~~ 377 (415)
T PF12460_consen 299 DSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLP-ELPTLLPLLLQSLSLP 377 (415)
T ss_pred CcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHHHHHhCCC
Confidence 4222 233444433 47777777777777799999999999998744332222 1234889999999999
Q ss_pred ChHHHHHHHHHHHHHHHhhh
Q 037562 591 DPKIVTVCLEGLENILKVGV 610 (670)
Q Consensus 591 ~~~v~~~a~~~l~~l~~~~~ 610 (670)
|++++..++.++..++...+
T Consensus 378 ~~~v~~s~L~tL~~~l~~~~ 397 (415)
T PF12460_consen 378 DADVLLSSLETLKMILEEAP 397 (415)
T ss_pred CHHHHHHHHHHHHHHHHcCH
Confidence 99999999999999887653
No 111
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.07 E-value=0.00052 Score=64.19 Aligned_cols=230 Identities=15% Similarity=0.169 Sum_probs=156.5
Q ss_pred hhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh-CCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHh-
Q 037562 289 FLMRQDYPQLQFKAAWALTNIASGTSENTKVVID-HGAVPIFVKLLAS--PSVDVRKQTVWALGNVAGDSPRCRDLVLS- 364 (670)
Q Consensus 289 ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~- 364 (670)
+++.-+ +-.+..|++++.++.. .++.|..+-. ...-..++..+++ ....++.+.+.+++.++.. +.+.+.+-.
T Consensus 157 l~Q~i~-~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~-~~~aqdi~K~ 233 (432)
T COG5231 157 LSQLID-FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFS-KECAQDIDKM 233 (432)
T ss_pred HHHHHH-HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcC-HHHHHHHHHH
Confidence 333334 5678899999999988 7777776553 3344677777776 5678999999999998854 344432222
Q ss_pred cCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChh--hhhhhHHHHHHhhcc---CChhHHHHHHHHHHHhccCC
Q 037562 365 QGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFN--QVRPALPVLAQLIRS---NDEEVLTDACWALSYLSDGT 439 (670)
Q Consensus 365 ~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~i~~L~~lL~~---~~~~v~~~al~~L~~l~~~~ 439 (670)
...+.-++++......+.+.+-++.++.|++...|..... ...+-+...++.|.. .|++++...-..=..+..+.
T Consensus 234 ~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~ 313 (432)
T COG5231 234 DDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNT 313 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhh
Confidence 1346677777777777889999999999999865433222 123333444455442 35555544333322222211
Q ss_pred h------------------------------HHHHHHHHc--CCHHHHHHhcCCCCcc-chhHHHHHHHHhhcCCchhhH
Q 037562 440 N------------------------------DKVQAVIEA--GVYPRLVELLGHSSSS-VLTPALRTIRNIVKGDDFQTQ 486 (670)
Q Consensus 440 ~------------------------------~~~~~~~~~--~~i~~L~~lL~~~~~~-v~~~a~~~L~~l~~~~~~~~~ 486 (670)
. .+...+.+. .++..+..++++.++. ...-||.-|+.+....|+...
T Consensus 314 k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~ 393 (432)
T COG5231 314 KKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINA 393 (432)
T ss_pred hhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHH
Confidence 1 111112221 3678888899987776 566788999999998999899
Q ss_pred HHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc
Q 037562 487 CIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC 522 (670)
Q Consensus 487 ~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 522 (670)
.+.+.|+-+.++.+++++ +++|+-+|..++..+..
T Consensus 394 vl~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 394 VLSKYGVKEIIMNLINHD-DDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHHh
Confidence 888999999999999999 99999999999887643
No 112
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=0.0093 Score=65.31 Aligned_cols=342 Identities=14% Similarity=0.127 Sum_probs=194.5
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT 317 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 317 (670)
..+..++..+++.|..++-.|++.+..++.....+-.++ ++...++++.-.+.+..-..|+-+|+.+|...----
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~-----vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQ-----VIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHH-----HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 346777888888999999999999999988742222222 455566655544335666789999999997331111
Q ss_pred HHHHhCCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhCCCchh--HHHHHhcCChHHHHHHhcccCChhHHHHH
Q 037562 318 KVVIDHGAVPIFVKLLAS--------PSVDVRKQTVWALGNVAGDSPRC--RDLVLSQGALIPLLAELNENANLSMLRTA 387 (670)
Q Consensus 318 ~~i~~~~~i~~L~~lL~~--------~~~~v~~~a~~~L~~l~~~~~~~--~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a 387 (670)
..+. .++|.++.-+.- ....||..|+.+.+.++...... +. +.+ .....|+..-.-+.+...|+.|
T Consensus 416 s~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~-~L~s~LL~~AlFDrevncRRAA 491 (1133)
T KOG1943|consen 416 SLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQ-SLASALLIVALFDREVNCRRAA 491 (1133)
T ss_pred HHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHH-HHHHHHHHHHhcCchhhHhHHH
Confidence 1111 245555554432 34679999999999988543221 11 111 1122222222256677899999
Q ss_pred HHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCC---hhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCc
Q 037562 388 TWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSND---EEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSS 464 (670)
Q Consensus 388 ~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~---~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~ 464 (670)
..++.......++. ..+++ ++...| -..+.++-..+..-....+...+.+++ ..+..-+.+-+.
T Consensus 492 sAAlqE~VGR~~n~-----p~Gi~----Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~----~L~t~Kv~HWd~ 558 (1133)
T KOG1943|consen 492 SAALQENVGRQGNF-----PHGIS----LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN----HLLTKKVCHWDV 558 (1133)
T ss_pred HHHHHHHhccCCCC-----CCchh----hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH----HHHhcccccccH
Confidence 99988877664322 11222 122222 223333333333322233333443333 222333666788
Q ss_pred cchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHH---HHHHHHh---cC---
Q 037562 465 SVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNRE---QIQAVID---SG--- 535 (670)
Q Consensus 465 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~---~~~~l~~---~~--- 535 (670)
.+|+.++++|.+++...++ ......++.+++...+. +...+..+..+.+.++.+... ....+.+ ++
T Consensus 559 ~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~-~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ 633 (1133)
T KOG1943|consen 559 KIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSK-DASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLS 633 (1133)
T ss_pred HHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCC-ChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhh
Confidence 8999999999999875543 33456788888888888 888888777777776542111 1111111 12
Q ss_pred ChHHHHHH-hhcC-ChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHh
Q 037562 536 LIGPIVNL-LQNT-EFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKV 608 (670)
Q Consensus 536 ~i~~L~~l-l~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~ 608 (670)
+++.+.+. +..+ ..-.+...+.++..+... .......+.-.+.-..+.+.+..++ .++..+.+++..++.-
T Consensus 634 ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s-~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~ 706 (1133)
T KOG1943|consen 634 IIPPICDRYFYRGQGTLMRQATLKFIEQLSLS-KDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVST 706 (1133)
T ss_pred hccHHHHHHhccchHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHH
Confidence 23333322 2222 245566677777777765 3332233333334444555555555 7888888888887653
No 113
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.07 E-value=0.00035 Score=70.40 Aligned_cols=281 Identities=11% Similarity=0.080 Sum_probs=168.8
Q ss_pred cCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChH
Q 037562 248 WSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVP 327 (670)
Q Consensus 248 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~ 327 (670)
.+....++.++++.++.++..+ ...+.++. .+..|-.+|+++. ...|..|.++|..++...|+... -+=+
T Consensus 274 s~k~emV~lE~Ar~v~~~~~~n---v~~~~~~~-~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~kv~-----vcN~ 343 (898)
T COG5240 274 SDKFEMVFLEAARAVCALSEEN---VGSQFVDQ-TVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQKVS-----VCNK 343 (898)
T ss_pred cCcchhhhHHHHHHHHHHHHhc---cCHHHHHH-HHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCceee-----ecCh
Confidence 3455788999999998886553 11122222 4666777888888 79999999999999985554321 1224
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhh
Q 037562 328 IFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVR 407 (670)
Q Consensus 328 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 407 (670)
.+-.++.+.+..+...|+..|..- +..+.-+.+ +..+...+ .+-+...+.-+..++..||...|.....
T Consensus 344 evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrL-----v~~I~sfv-hD~SD~FKiI~ida~rsLsl~Fp~k~~s--- 412 (898)
T COG5240 344 EVESLISDENRTISTYAITTLLKT--GTEETIDRL-----VNLIPSFV-HDMSDGFKIIAIDALRSLSLLFPSKKLS--- 412 (898)
T ss_pred hHHHHhhcccccchHHHHHHHHHc--CchhhHHHH-----HHHHHHHH-HhhccCceEEeHHHHHHHHhhCcHHHHH---
Confidence 555677777777777766666553 223322332 22223333 2233344455555666666555443332
Q ss_pred hhHHHHHHhh-ccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhH
Q 037562 408 PALPVLAQLI-RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQ 486 (670)
Q Consensus 408 ~~i~~L~~lL-~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 486 (670)
.+..|...| +.+..+...++..++..+..+.++..+ .++..|..++.+. +.-.-++++|+-+....|....
T Consensus 413 -~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDc--ey~~I~vrIL~iLG~EgP~a~~ 484 (898)
T COG5240 413 -YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDC--EYHQITVRILGILGREGPRAKT 484 (898)
T ss_pred -HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhc--chhHHHHHHHHHhcccCCCCCC
Confidence 233333333 345677888888888887766654433 3345566666543 2344455666666554332211
Q ss_pred HHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcC
Q 037562 487 CIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATK 564 (670)
Q Consensus 487 ~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 564 (670)
-...+..+..-+--. +.-+|..|..+|..++..-.+ ......+...|-+++.+.|.+||..|..++.++-.
T Consensus 485 ---P~~yvrhIyNR~iLE-N~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 485 ---PGKYVRHIYNRLILE-NNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred ---cchHHHHHHHHHHHh-hhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 012344555555445 678999999999998763222 11233455678889999999999999999999864
No 114
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=98.06 E-value=0.00013 Score=79.79 Aligned_cols=294 Identities=17% Similarity=0.128 Sum_probs=185.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC---CCchhH
Q 037562 283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAG---DSPRCR 359 (670)
Q Consensus 283 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~---~~~~~~ 359 (670)
++.+...+..-...+.+..|+..|..++.-.. +...-..++|.++.++.++..+||..|+.+|..+.. +-+..-
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~---de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~d 500 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYID---DEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSD 500 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcc---hHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCccc
Confidence 55555555554436788999999999887221 111223578999999999999999999999888762 222222
Q ss_pred HHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHH-----HHHHhhccCChhHHHHHHHHHHH
Q 037562 360 DLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALP-----VLAQLIRSNDEEVLTDACWALSY 434 (670)
Q Consensus 360 ~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~-----~L~~lL~~~~~~v~~~al~~L~~ 434 (670)
..++..-.+|.|-.++.++....++..-+.+|+.|+... .+.+. ....++.+.+.+ ...
T Consensus 501 aniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA--------~rFle~~q~~~~~g~~n~~nse-------t~~- 564 (1431)
T KOG1240|consen 501 ANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTA--------YRFLELTQELRQAGMLNDPNSE-------TAP- 564 (1431)
T ss_pred chhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHH--------HHHHHHHHHHHhcccccCcccc-------ccc-
Confidence 233333356666666644455566666677777776531 11111 111123333322 000
Q ss_pred hccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHH
Q 037562 435 LSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVS 514 (670)
Q Consensus 435 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~ 514 (670)
-...+...+.+.+ ++-+....++.++++-|+..-+..|.-||...... =-+.-+++.|+.+|++. |..+|..-.
T Consensus 565 -~~~~~~~~~~L~~-~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~---ksND~iLshLiTfLNDk-Dw~LR~aFf 638 (1431)
T KOG1240|consen 565 -EQNYNTELQALHH-TVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKE---KSNDVILSHLITFLNDK-DWRLRGAFF 638 (1431)
T ss_pred -ccccchHHHHHHH-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhc---ccccchHHHHHHHhcCc-cHHHHHHHH
Confidence 0111222233333 44466777788777778888888888887522111 11234688999999999 999987766
Q ss_pred HHHHHhhc--CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCCh
Q 037562 515 WIISNITC--GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADP 592 (670)
Q Consensus 515 ~~L~~l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~ 592 (670)
..+.-++. +... ++..++|.|.+-+.++.+-|...|++++..|+..+ ..++..-.+.++...-+|-+++.
T Consensus 639 dsI~gvsi~VG~rs-----~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~---ll~K~~v~~i~~~v~PlL~hPN~ 710 (1431)
T KOG1240|consen 639 DSIVGVSIFVGWRS-----VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLG---LLRKPAVKDILQDVLPLLCHPNL 710 (1431)
T ss_pred hhccceEEEEeeee-----HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhc---ccchHHHHHHHHhhhhheeCchH
Confidence 66665543 2111 34457888889999999999999999999998864 22222223356666677889999
Q ss_pred HHHHHHHHHHHHHHHhh
Q 037562 593 KIVTVCLEGLENILKVG 609 (670)
Q Consensus 593 ~v~~~a~~~l~~l~~~~ 609 (670)
-||..++..+..+.+.-
T Consensus 711 WIR~~~~~iI~~~~~~l 727 (1431)
T KOG1240|consen 711 WIRRAVLGIIAAIARQL 727 (1431)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999988776543
No 115
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.04 E-value=9.4e-06 Score=52.72 Aligned_cols=40 Identities=40% Similarity=0.864 Sum_probs=38.0
Q ss_pred ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 037562 313 TSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVA 352 (670)
Q Consensus 313 ~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 352 (670)
++++++.+++.|+++.|+++|+++++++++.|+|+|+|++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999997
No 116
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.0058 Score=69.10 Aligned_cols=288 Identities=16% Similarity=0.176 Sum_probs=168.4
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh--H
Q 037562 282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC--R 359 (670)
Q Consensus 282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~--~ 359 (670)
.+|.|.++=-+++ ..||.....+...+..+.....+...+ .+++-|+.-+.+....+|+.++-+|..+..+.+.- .
T Consensus 999 LIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~ 1076 (1702)
T KOG0915|consen 999 LIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVK 1076 (1702)
T ss_pred hhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHH
Confidence 5777777766777 899998888888888855555555554 57788888888899999999999999999776532 2
Q ss_pred HHHHhcCChHHHHHHhcccCChhHHH---HHHHHHHhhhcCC-----CCCChhhhhhhHHHHHH-hhccCChhHHHHHHH
Q 037562 360 DLVLSQGALIPLLAELNENANLSMLR---TATWTLFNFCRGK-----PQPPFNQVRPALPVLAQ-LIRSNDEEVLTDACW 430 (670)
Q Consensus 360 ~~i~~~~~i~~Ll~~l~~~~~~~~~~---~a~~~L~~l~~~~-----~~~~~~~~~~~i~~L~~-lL~~~~~~v~~~al~ 430 (670)
+.+.+ ....+++.+ ++-.+.+|. .++.+++.++-.. +.........++|.+.. -+-+.-+++|..++.
T Consensus 1077 e~lpe--lw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~ 1153 (1702)
T KOG0915|consen 1077 EKLPE--LWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIG 1153 (1702)
T ss_pred HHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHH
Confidence 22221 234444444 444556666 4455566665332 12223333445555441 122566899999999
Q ss_pred HHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccch-hHHHHH----------HHH-hhcCCchh--hHHHH-------
Q 037562 431 ALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVL-TPALRT----------IRN-IVKGDDFQ--TQCII------- 489 (670)
Q Consensus 431 ~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~-~~a~~~----------L~~-l~~~~~~~--~~~l~------- 489 (670)
++..++...+........ ..++.++.....-++.+. .-++++ +.. .+.+.+-. +...+
T Consensus 1154 tl~dl~Kssg~~lkP~~~-~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~v 1232 (1702)
T KOG0915|consen 1154 TLMDLAKSSGKELKPHFP-KLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISV 1232 (1702)
T ss_pred HHHHHHHhchhhhcchhh-HHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHH
Confidence 999999877664443322 566666666665444332 122222 111 11111100 01011
Q ss_pred hCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHH
Q 037562 490 NCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHE 569 (670)
Q Consensus 490 ~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~ 569 (670)
-...+|.+.+++..+..-..|..++..+.-++.......... ....+..++..+++.++.+++.-+.|.+.++...+++
T Consensus 1233 Leelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~-sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~d 1311 (1702)
T KOG0915|consen 1233 LEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPY-SGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPD 1311 (1702)
T ss_pred HHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcc-hhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChH
Confidence 112455555555544333444445555554433111000000 1124556666667888999999999999999988887
Q ss_pred HHHHHHH
Q 037562 570 QIKHLVR 576 (670)
Q Consensus 570 ~~~~l~~ 576 (670)
+.+.+++
T Consensus 1312 q~qKLie 1318 (1702)
T KOG0915|consen 1312 QMQKLIE 1318 (1702)
T ss_pred HHHHHHH
Confidence 8777554
No 117
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.94 E-value=1.3e-05 Score=79.87 Aligned_cols=130 Identities=15% Similarity=0.226 Sum_probs=84.1
Q ss_pred cCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceeccccccccccc
Q 037562 45 VMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDE 124 (670)
Q Consensus 45 ~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 124 (670)
.++++..|++++| .|+++|. ..++|++|.|.+|.+|+.+. ..+ .++|++|.|.+|.++..++
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP--~~L--P~nLe~L~Ls~Cs~L~sLP---------- 111 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLP--GSI--PEGLEKLTVCHCPEISGLP---------- 111 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCC--chh--hhhhhheEccCcccccccc----------
Confidence 4688999999999 7888872 22479999999999998762 222 3689999999998876553
Q ss_pred cccccccccccccc--cccccccccCCcccCCCCccEEeEecCCCcc--ccccCCcCCCCccceeeeeccCCccceeecc
Q 037562 125 VITFRELKELNLLQ--MQNLISFCSGNCAFTFPSLEILVVNYCPNMK--IFSGGELSTPNLHKVQLSRWDGEEHWIWVHD 200 (670)
Q Consensus 125 ~~~~~~L~~L~l~~--~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~--~~p~~~~~~~~L~~l~i~~~~~~~~~~~~~~ 200 (670)
+.|+.|.+.+ |..+..++ ++|+.|.+.++.... .+|. .-+++|+.|.++++.... .-.+
T Consensus 112 ----~sLe~L~L~~n~~~~L~~LP--------ssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~---LP~~ 174 (426)
T PRK15386 112 ----ESVRSLEIKGSATDSIKNVP--------NGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNII---LPEK 174 (426)
T ss_pred ----cccceEEeCCCCCcccccCc--------chHhheecccccccccccccc--ccCCcccEEEecCCCccc---Cccc
Confidence 3466666642 34444433 358888886533221 2221 224799999997655331 1134
Q ss_pred chhhhHHHH
Q 037562 201 LNTTIKYLY 209 (670)
Q Consensus 201 ~~~~i~~l~ 209 (670)
++.+++.+.
T Consensus 175 LP~SLk~L~ 183 (426)
T PRK15386 175 LPESLQSIT 183 (426)
T ss_pred ccccCcEEE
Confidence 555554444
No 118
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=97.93 E-value=0.0042 Score=62.99 Aligned_cols=347 Identities=12% Similarity=0.102 Sum_probs=185.8
Q ss_pred CChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC---CHHHHHHHHHHHHHHcCCChhhHHHHHhCCCh
Q 037562 250 DDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQD---YPQLQFKAAWALTNIASGTSENTKVVIDHGAV 326 (670)
Q Consensus 250 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i 326 (670)
.++-.|.+|+..|.++-..+ .+ +...+++.+.... +.......+++...+...+++.+..+ .
T Consensus 202 ~~~isqYHalGlLyq~kr~d------km----a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~-----r 266 (898)
T COG5240 202 GNPISQYHALGLLYQSKRTD------KM----AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQL-----R 266 (898)
T ss_pred CChHHHHHHHHHHHHHhccc------HH----HHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHH-----H
Confidence 34556777777777663321 11 1233444443322 11222223344444444444443332 3
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhh
Q 037562 327 PIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQV 406 (670)
Q Consensus 327 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 406 (670)
|.|-.-+++.-+-+.-.+++++..++..+-. ...++. .+..|-.+| ..+....+-.|..+|..++...|....
T Consensus 267 pfL~~wls~k~emV~lE~Ar~v~~~~~~nv~--~~~~~~-~vs~L~~fL-~s~rv~~rFsA~Riln~lam~~P~kv~--- 339 (898)
T COG5240 267 PFLNSWLSDKFEMVFLEAARAVCALSEENVG--SQFVDQ-TVSSLRTFL-KSTRVVLRFSAMRILNQLAMKYPQKVS--- 339 (898)
T ss_pred HHHHHHhcCcchhhhHHHHHHHHHHHHhccC--HHHHHH-HHHHHHHHH-hcchHHHHHHHHHHHHHHHhhCCceee---
Confidence 4555556666677777788888887744311 111111 244444444 666667778999999999987654422
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhH
Q 037562 407 RPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQ 486 (670)
Q Consensus 407 ~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 486 (670)
-+-+.+-.++.+.+..+..+|+..|..-. .++.+. .++..+..++.+-+...+.-++.++..++-..+....
T Consensus 340 -vcN~evEsLIsd~Nr~IstyAITtLLKTG--t~e~id-----rLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~ 411 (898)
T COG5240 340 -VCNKEVESLISDENRTISTYAITTLLKTG--TEETID-----RLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKL 411 (898)
T ss_pred -ecChhHHHHhhcccccchHHHHHHHHHcC--chhhHH-----HHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHH
Confidence 23344566777778888888877775543 333333 2344555555554555555555555555554443333
Q ss_pred HHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCC
Q 037562 487 CIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFG 566 (670)
Q Consensus 487 ~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 566 (670)
..+..|...|......+.+..+..++..+....|+.... ++..|...++ |.+.-+.++..|+-+...|
T Consensus 412 -----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIE--Dcey~~I~vrIL~iLG~Eg 479 (898)
T COG5240 412 -----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIE--DCEYHQITVRILGILGREG 479 (898)
T ss_pred -----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHh--hcchhHHHHHHHHHhcccC
Confidence 234555555544437778888888888877766554332 3445666655 3344444555555555443
Q ss_pred CH--HHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcC
Q 037562 567 TH--EQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSH 644 (670)
Q Consensus 567 ~~--~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~ 644 (670)
.. .-.+ .+..+..-+--++.-+|.+|..||..+.-..+. . +........+....++
T Consensus 480 P~a~~P~~------yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d-~---------------~~~~sv~~~lkRclnD 537 (898)
T COG5240 480 PRAKTPGK------YVRHIYNRLILENNIVRSAAVQALSKFALNISD-V---------------VSPQSVENALKRCLND 537 (898)
T ss_pred CCCCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc-c---------------ccHHHHHHHHHHHhhc
Confidence 11 0001 122223322334666777777777664322111 1 1111224556677788
Q ss_pred CCHHHHHHHHHHHHHh
Q 037562 645 DDNGISEKAVEILETY 660 (670)
Q Consensus 645 ~~~~v~~~a~~~l~~~ 660 (670)
.+++|+++|.-.++.+
T Consensus 538 ~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 538 QDDEVRDRASFLLRNM 553 (898)
T ss_pred ccHHHHHHHHHHHHhh
Confidence 8888888887777655
No 119
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=1.4e-06 Score=80.39 Aligned_cols=140 Identities=18% Similarity=0.127 Sum_probs=88.4
Q ss_pred CCccccEEEeccCcCcccccc-cccccCCCCcEEEEecCCCCccccCC-C-ccccccceeeeccccccccc-ccchhhhc
Q 037562 20 NGMEVKISEAYNCYRLENILI-EESSVMNNLVILCVHCCDHLINLVPS-S-TSFQNLTNLVVSHCKRLKIV-LTSSIAKT 95 (670)
Q Consensus 20 ~~~~L~~L~i~~c~~l~~~~~-~~~~~~~~L~~L~i~~c~~l~~~~~~-~-~~~~~L~~L~i~~c~~l~~l-~~~~~~~~ 95 (670)
+..+|+.|+|+.|+++++-.. .....+..|..|++++|.-....... + +-=++|+.|+|+||.+--.. ........
T Consensus 232 kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~r 311 (419)
T KOG2120|consen 232 KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRR 311 (419)
T ss_pred ccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHh
Confidence 344888888888888876432 12356788888888888744332110 0 11257888999988642211 01123457
Q ss_pred ccccceeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCC
Q 037562 96 LVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPN 167 (670)
Q Consensus 96 l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~ 167 (670)
+|+|.+|++++|..++.-+. .....|+.|++|+++.|..+----. .+....|+|.+|++.+|-.
T Consensus 312 cp~l~~LDLSD~v~l~~~~~-------~~~~kf~~L~~lSlsRCY~i~p~~~-~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCF-------QEFFKFNYLQHLSLSRCYDIIPETL-LELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred CCceeeeccccccccCchHH-------HHHHhcchheeeehhhhcCCChHHe-eeeccCcceEEEEeccccC
Confidence 88999999999887764211 1234688899999988876521000 1245678899999888754
No 120
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.93 E-value=0.0077 Score=64.91 Aligned_cols=219 Identities=19% Similarity=0.149 Sum_probs=136.9
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT 317 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 317 (670)
..+|.+++.+.+.|.+++.-.-..+...+... + +.++- .++.+.+=+++++ +.+|-.|++.++.+-. ++..
T Consensus 55 sLf~dViK~~~trd~ElKrL~ylYl~~yak~~--P--~~~lL--avNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~ 125 (757)
T COG5096 55 SLFPDVIKNVATRDVELKRLLYLYLERYAKLK--P--ELALL--AVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELL 125 (757)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccC--H--HHHHH--HHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHH
Confidence 34677777777778888888888888887663 2 11111 3677788888899 9999999999998854 2222
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562 318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG 397 (670)
Q Consensus 318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 397 (670)
. .+++++.+++.++++.||..|+-++.++-.-++ +.+.+.|.+..+..++ .+.++.+.++|..+|..+...
T Consensus 126 ~-----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 126 G-----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred H-----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence 2 357899999999999999999999999985554 3455666666666666 889999999999999988876
Q ss_pred CCCCChhhhhhhHHHHHHhhccCC-hhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHH
Q 037562 398 KPQPPFNQVRPALPVLAQLIRSND-EEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN 476 (670)
Q Consensus 398 ~~~~~~~~~~~~i~~L~~lL~~~~-~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 476 (670)
....-.......++.+.-...... +.++...+..+..-....+.... ++...+...+++.++.+...|+..+..
T Consensus 197 ~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~s~~-----~~~~~~~~~~~~~n~~vl~~av~~i~~ 271 (757)
T COG5096 197 LAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPDSAE-----DFEERLSPPLQHNNAEVLLIAVKVILR 271 (757)
T ss_pred hhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCCcHH-----HHHHhccchhhhCcHHHHHHHHHHHHH
Confidence 211111111111121111111111 33333344444443332222222 223444455566677777777666665
Q ss_pred hhc
Q 037562 477 IVK 479 (670)
Q Consensus 477 l~~ 479 (670)
+..
T Consensus 272 l~~ 274 (757)
T COG5096 272 LLV 274 (757)
T ss_pred Hhh
Confidence 554
No 121
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=0.0025 Score=71.86 Aligned_cols=342 Identities=13% Similarity=0.129 Sum_probs=190.1
Q ss_pred HHHHHhcCCChHHH-HHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC-CChhhHHH
Q 037562 242 AMVDGVWSDDNSLQ-LEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIAS-GTSENTKV 319 (670)
Q Consensus 242 ~l~~~l~~~~~~~~-~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~ 319 (670)
.+...+.+.++..+ ....|.|.-+-.-. ...........+...+.++|.+.+ +-+|..|.+-++-+-. ++...++.
T Consensus 822 ~l~~~~~s~nph~R~A~~VWLLs~vq~l~-~~~~v~l~~~eI~~aF~~~Lsd~d-Ef~QDvAsrGlglVYelgd~~~k~~ 899 (1702)
T KOG0915|consen 822 LLDTLLTSPNPHERQAGCVWLLSLVQYLG-QQPEVVLMLKEIQEAFSHLLSDND-EFSQDVASRGLGLVYELGDSSLKKS 899 (1702)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhc-cCchhhhccHHHHHHHHHHhcccH-HHHHHHHhcCceEEEecCCchhHHH
Confidence 34445567887765 44556554432221 112122223345578888998888 7888888887765433 33444444
Q ss_pred HHhCCChHHHHHhhCC-----CCHHH-------------HHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCCh
Q 037562 320 VIDHGAVPIFVKLLAS-----PSVDV-------------RKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANL 381 (670)
Q Consensus 320 i~~~~~i~~L~~lL~~-----~~~~v-------------~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~ 381 (670)
+++ +.+..|..-=+. ++.++ .-.+-.=|+|++.+-. +-..+-.++++-+.+...
T Consensus 900 LV~-sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~-------qPdLVYKFM~LAnh~A~w 971 (1702)
T KOG0915|consen 900 LVD-SLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLG-------QPDLVYKFMQLANHNATW 971 (1702)
T ss_pred HHH-HHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcC-------ChHHHHHHHHHhhhhchh
Confidence 432 223333220000 11111 1122233445543211 111233445555444455
Q ss_pred hHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC
Q 037562 382 SMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH 461 (670)
Q Consensus 382 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~ 461 (670)
.-+.-|++-+..++..............+|.|.+.=-+++..|+.....+-..+...+.......+. .+++-|+.-+.+
T Consensus 972 nSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~ 1050 (1702)
T KOG0915|consen 972 NSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTS 1050 (1702)
T ss_pred hcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccc
Confidence 5666677777777766533334444667788887777888888876666555566554444443333 677888888999
Q ss_pred CCccchhHHHHHHHHhhcCCchh--hHHHHhCCChHHHHHhhccCCchhHHHHH---HHHHHHhhcC-----CHHHHHHH
Q 037562 462 SSSSVLTPALRTIRNIVKGDDFQ--TQCIINCGALPYFLDMLVHNHEESIKKEV---SWIISNITCG-----NREQIQAV 531 (670)
Q Consensus 462 ~~~~v~~~a~~~L~~l~~~~~~~--~~~l~~~~~~~~L~~~l~~~~~~~v~~~a---~~~L~~l~~~-----~~~~~~~l 531 (670)
..+++|+.+|.++..+..+.+.. .+.+- .+...+...+++- ...||+.| +.+++.++.. +....+..
T Consensus 1051 kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~ 1127 (1702)
T KOG0915|consen 1051 KEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEAAFRVMDDI-KESVREAADKAARALSKLCVRICDVTNGAKGKEA 1127 (1702)
T ss_pred hhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHH
Confidence 99999999999999999876532 12111 2344444555555 55677664 4455555431 11111222
Q ss_pred HhcCChHHHHH--HhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHH-HHHHHH
Q 037562 532 IDSGLIGPIVN--LLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIV-TVCLEG 601 (670)
Q Consensus 532 ~~~~~i~~L~~--ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~-~~a~~~ 601 (670)
+. .++|.|++ ++ +.-.++|..++.++..++..........+- ..++.|.+....-++.|. ..++++
T Consensus 1128 l~-~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~~--~LIp~ll~~~s~lE~~vLnYls~r~ 1196 (1702)
T KOG0915|consen 1128 LD-IILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHFP--KLIPLLLNAYSELEPQVLNYLSLRL 1196 (1702)
T ss_pred HH-HHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchhh--HHHHHHHHHccccchHHHHHHHHhh
Confidence 21 24555554 22 556899999999999999874433322222 267777777776655543 333444
No 122
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.93 E-value=0.0005 Score=67.87 Aligned_cols=398 Identities=15% Similarity=0.116 Sum_probs=201.7
Q ss_pred HHHHhc-CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC---hhhHH
Q 037562 243 MVDGVW-SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGT---SENTK 318 (670)
Q Consensus 243 l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~---~~~~~ 318 (670)
++..+. ...+.+..+.+.+|.++.+....+..+.-.-..++..+-.++++.| +.|+-.+...++.+.... |+...
T Consensus 111 l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d-~~v~vs~l~~~~~~v~t~~~~pei~~ 189 (728)
T KOG4535|consen 111 LLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKD-VNVRVSSLTLLGAIVSTHAPLPEVQL 189 (728)
T ss_pred HHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCC-CChhhHHHHHHHHHHhcCCCCHHHHH
Confidence 333343 3456788899999999988753333333333445666677888888 899999888888876632 22221
Q ss_pred HHHhC--------------------CChHHHHHhhCC----------------------------------------CCH
Q 037562 319 VVIDH--------------------GAVPIFVKLLAS----------------------------------------PSV 338 (670)
Q Consensus 319 ~i~~~--------------------~~i~~L~~lL~~----------------------------------------~~~ 338 (670)
.+-.. -.-+.+.+.-.+ ...
T Consensus 190 ~~~~~~s~~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps 269 (728)
T KOG4535|consen 190 LLQQPCSSSNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIRLCISIVVLPKEDSCSGSDAGSAAGSTYEPS 269 (728)
T ss_pred HhcCCCccccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceeeeeeeeeecCCccccchhhHHhhhcCccCCc
Confidence 11000 000011110000 001
Q ss_pred HHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC-----CCCCChhh-hhhhHHH
Q 037562 339 DVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG-----KPQPPFNQ-VRPALPV 412 (670)
Q Consensus 339 ~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~~-~~~~i~~ 412 (670)
.+|-.|..+|.-++.+-.-.+..+.+ +...+..-..+.++.++..++.++..+... .|...... ..+.+-.
T Consensus 270 ~~rle~~qvl~~~a~~~~~~~~~~~~---l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~ 346 (728)
T KOG4535|consen 270 PMRLEALQVLTLLARYFSMTQAYLME---LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWT 346 (728)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHH
Confidence 23333334443333222211221111 111111112456677777777776655432 12221111 1111111
Q ss_pred HH-------HhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhh
Q 037562 413 LA-------QLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQT 485 (670)
Q Consensus 413 L~-------~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 485 (670)
+. ..-++.-+..+..++.++.++..........-.....+..+..+-++.+.-++..|.++++.+.-+..-..
T Consensus 347 ~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~ 426 (728)
T KOG4535|consen 347 MMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQ 426 (728)
T ss_pred HHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhh
Confidence 11 01112234566677777777763321111000000111112222222333477788888887776655555
Q ss_pred HHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc----CCHH---HHHHHHhcCChHHHHHHhh---cCChhHHHHH
Q 037562 486 QCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC----GNRE---QIQAVIDSGLIGPIVNLLQ---NTEFDTKKEA 555 (670)
Q Consensus 486 ~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~----~~~~---~~~~l~~~~~i~~L~~ll~---~~~~~v~~~a 555 (670)
...+-.+....+...+.+. .-.+|..++|+++|++. +.|. ....+. .-.+..+++... ..+.+|+.+|
T Consensus 427 d~~fv~~aa~~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s-g~ll~~~~~~A~~~~Ad~dkV~~na 504 (728)
T KOG4535|consen 427 DVIFVADAANAILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS-GLLLLKMLRSAIEASADKDKVKSNA 504 (728)
T ss_pred hHHHHHHHHHHHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhHH
Confidence 5455555666777777776 77899999999999976 2221 222221 123444444433 2357999999
Q ss_pred HHHHHHhcCCCCH--HHHHHHHHcCCcHHHHhhc-cCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHh
Q 037562 556 AWAISNATKFGTH--EQIKHLVREGCVKPLCDLL-LCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEA 632 (670)
Q Consensus 556 ~~aL~~l~~~~~~--~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (670)
..+|+|+.+.-.+ +........+.+..+.... -...-.|+=+++.+++|++++..--- ..+.. ..
T Consensus 505 vraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~l-------q~~~w-----A~ 572 (728)
T KOG4535|consen 505 VRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPL-------QTAPW-----AS 572 (728)
T ss_pred HHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccc-------cCCCc-----hH
Confidence 9999998764211 0111112223333333322 34566899999999999997654310 00111 12
Q ss_pred chHHHHHHh-hcCCCHHHHHHHHHHHH
Q 037562 633 EGLEKIENL-QSHDDNGISEKAVEILE 658 (670)
Q Consensus 633 g~~~~l~~L-~~~~~~~v~~~a~~~l~ 658 (670)
..+..|..| ..+.|..|+..|..++.
T Consensus 573 ~~F~~L~~Lv~~~~NFKVRi~AA~aL~ 599 (728)
T KOG4535|consen 573 QAFNALTSLVTSCKNFKVRIRAAAALS 599 (728)
T ss_pred HHHHHHHHHHHHhccceEeehhhhhhc
Confidence 235666555 67788888888877664
No 123
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.86 E-value=4.1e-05 Score=60.13 Aligned_cols=87 Identities=26% Similarity=0.421 Sum_probs=69.8
Q ss_pred HHHHHHhh-cCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 037562 283 VPRFVEFL-MRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDL 361 (670)
Q Consensus 283 l~~L~~ll-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 361 (670)
++.|++.+ ++++ +.+|..|+++|+.+.. + .+++.|+.+++++++.+|..|+++|+.+.
T Consensus 1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 57889988 6666 8999999999996532 2 35899999999999999999999999883
Q ss_pred HHhcCChHHHHHHhcccCChhHHHHHHHHHH
Q 037562 362 VLSQGALIPLLAELNENANLSMLRTATWTLF 392 (670)
Q Consensus 362 i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~ 392 (670)
....++.|.+.+.++.+..++..|+.+|+
T Consensus 60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 11268899999967677777888888774
No 124
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.0012 Score=68.99 Aligned_cols=320 Identities=12% Similarity=0.141 Sum_probs=200.2
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562 239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRF-VEFLMRQDYPQLQFKAAWALTNIASGTSENT 317 (670)
Q Consensus 239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L-~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 317 (670)
-+|.+.+.+.+.+.-++.+|..++..+-... ..++.. .|.| -.+|..+.++..+.+|...|... +++.
T Consensus 135 l~p~IracleHrhsYVRrNAilaifsIyk~~-----~~L~pD--apeLi~~fL~~e~DpsCkRNAFi~L~~~---D~Er- 203 (948)
T KOG1058|consen 135 LMPSIRACLEHRHSYVRRNAILAIFSIYKNF-----EHLIPD--APELIESFLLTEQDPSCKRNAFLMLFTT---DPER- 203 (948)
T ss_pred hHHHHHHHHhCcchhhhhhhheeehhHHhhh-----hhhcCC--hHHHHHHHHHhccCchhHHHHHHHHHhc---CHHH-
Confidence 3688888899999999999999888774431 112211 2233 33444443378888887776655 3332
Q ss_pred HHHHhCCChHHHHHh---hCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhh
Q 037562 318 KVVIDHGAVPIFVKL---LASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNF 394 (670)
Q Consensus 318 ~~i~~~~~i~~L~~l---L~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l 394 (670)
++..+... +.+-++.++...+..+...|...|.-+.. .+..+..+| .++++.++..|+.+|.++
T Consensus 204 -------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~-----~i~~i~~lL-~stssaV~fEaa~tlv~l 270 (948)
T KOG1058|consen 204 -------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKAR-----YIRCIYNLL-SSTSSAVIFEAAGTLVTL 270 (948)
T ss_pred -------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhH-----HHHHHHHHH-hcCCchhhhhhcceEEEc
Confidence 23333333 33345777777888888888766654443 477888888 666889999999999999
Q ss_pred hcCCCCCChhhhhhhHHHHHHhhcc-CChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHH
Q 037562 395 CRGKPQPPFNQVRPALPVLAQLIRS-NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRT 473 (670)
Q Consensus 395 ~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~ 473 (670)
+..+ .....+...++.++.. +|..+..-.+.-|..+...... +++ |++--++++|.+++-+++..++.+
T Consensus 271 S~~p-----~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~~~~~----il~-~l~mDvLrvLss~dldvr~Ktldi 340 (948)
T KOG1058|consen 271 SNDP-----TALKAAASTYIDLLVKESDNNVKLIVLDRLSELKALHEK----ILQ-GLIMDVLRVLSSPDLDVRSKTLDI 340 (948)
T ss_pred cCCH-----HHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhhhhHH----HHH-HHHHHHHHHcCcccccHHHHHHHH
Confidence 8763 2223344445555432 3444444444445444433222 333 667778899999999999999998
Q ss_pred HHHhhcCCchhhHHHHhCCChHHHHHhhc------cCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcC
Q 037562 474 IRNIVKGDDFQTQCIINCGALPYFLDMLV------HNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNT 547 (670)
Q Consensus 474 L~~l~~~~~~~~~~l~~~~~~~~L~~~l~------~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~ 547 (670)
...++.... ... ++..|-.-+. +.++...|..-..++..++...++ +.+.+++.|++.+.+.
T Consensus 341 ~ldLvssrN--ved-----iv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~-----~aatvV~~ll~fisD~ 408 (948)
T KOG1058|consen 341 ALDLVSSRN--VED-----IVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE-----VAATVVSLLLDFISDS 408 (948)
T ss_pred HHhhhhhcc--HHH-----HHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH-----HHHHHHHHHHHHhccC
Confidence 888875321 111 1111111111 122456688888888888877777 3455788999999888
Q ss_pred ChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhcc-CCChHHHHHHHHHHHHHHHhhh
Q 037562 548 EFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLL-CADPKIVTVCLEGLENILKVGV 610 (670)
Q Consensus 548 ~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~ 610 (670)
++......+..+...... -|..+.. +++.|++-+. -...++...++|+++..+....
T Consensus 409 N~~aas~vl~FvrE~iek-~p~Lr~~-----ii~~l~~~~~~irS~ki~rgalwi~GeYce~~~ 466 (948)
T KOG1058|consen 409 NEAAASDVLMFVREAIEK-FPNLRAS-----IIEKLLETFPQIRSSKICRGALWILGEYCEGLS 466 (948)
T ss_pred CHHHHHHHHHHHHHHHHh-CchHHHH-----HHHHHHHhhhhhcccccchhHHHHHHHHHhhhH
Confidence 877766666666666554 2332222 4555555553 3566778888999888776544
No 125
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.009 Score=62.19 Aligned_cols=297 Identities=10% Similarity=0.107 Sum_probs=187.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHcCCChhhHH
Q 037562 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQD-YPQLQFKAAWALTNIASGTSENTK 318 (670)
Q Consensus 240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 318 (670)
+..+.+-+.+.|+..+.-|+.++.++.+.+ ....+ . +.+-++|-+++ .+-++..|+-+|..+-..+|+..
T Consensus 113 in~iknDL~srn~~fv~LAL~~I~niG~re---~~ea~-~----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~- 183 (938)
T KOG1077|consen 113 INSIKNDLSSRNPTFVCLALHCIANIGSRE---MAEAF-A----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLV- 183 (938)
T ss_pred HHHHHhhhhcCCcHHHHHHHHHHHhhccHh---HHHHh-h----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcccc-
Confidence 456666677888889999999999985542 22222 1 22235554443 35788899999999887555432
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc----------------cCChh
Q 037562 319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE----------------NANLS 382 (670)
Q Consensus 319 ~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~----------------~~~~~ 382 (670)
-..+..+.++.+|.+.+-.+...+...+.-++...|+.... .++.-+..+.. -+.|.
T Consensus 184 --~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~-----~~~~avs~L~riv~~~~t~~qdYTyy~vP~PW 256 (938)
T KOG1077|consen 184 --NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKT-----CLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPW 256 (938)
T ss_pred --ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhh-----hHHHHHHHHHHHHhhcccchhhceeecCCChH
Confidence 23467889999999998888888888888888776653222 23322222210 13456
Q ss_pred HHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccC----C---hhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHH
Q 037562 383 MLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSN----D---EEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRL 455 (670)
Q Consensus 383 ~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~----~---~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L 455 (670)
++..++..|.++-.............++..++...+.. + ...+..++.-..+++.+-+..-+.+. ..+..|
T Consensus 257 L~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~L 334 (938)
T KOG1077|consen 257 LQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQL 334 (938)
T ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHH
Confidence 77778888887733222222333344445444444421 1 12223333333333322222222222 466788
Q ss_pred HHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcC
Q 037562 456 VELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSG 535 (670)
Q Consensus 456 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~ 535 (670)
-.++.+....+|.-|+..+..++..... ...+... .+.++..|+...|..+|+.|+..|-.+|..+ +.+.
T Consensus 335 g~fls~rE~NiRYLaLEsm~~L~ss~~s-~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~--Nak~----- 404 (938)
T KOG1077|consen 335 GQFLSHRETNIRYLALESMCKLASSEFS-IDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS--NAKQ----- 404 (938)
T ss_pred HHHhhcccccchhhhHHHHHHHHhccch-HHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh--hHHH-----
Confidence 8999999999999999999999885432 3323332 7788899985559999999999999998632 2222
Q ss_pred ChHHHHHHhhcCChhHHHHHHHHHHHhcC
Q 037562 536 LIGPIVNLLQNTEFDTKKEAAWAISNATK 564 (670)
Q Consensus 536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 564 (670)
++..|++.+.+.++.+|+..+-=++-++.
T Consensus 405 IV~elLqYL~tAd~sireeivlKvAILaE 433 (938)
T KOG1077|consen 405 IVAELLQYLETADYSIREEIVLKVAILAE 433 (938)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 45667888888888888877666666655
No 126
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.85 E-value=3e-05 Score=50.36 Aligned_cols=41 Identities=37% Similarity=0.669 Sum_probs=37.9
Q ss_pred CHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcC
Q 037562 524 NREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATK 564 (670)
Q Consensus 524 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 564 (670)
++++++.+++.|++|.|++++.+++++++++|+|+|+|++.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 46788899999999999999999999999999999999863
No 127
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.85 E-value=0.00028 Score=66.99 Aligned_cols=189 Identities=14% Similarity=0.096 Sum_probs=118.2
Q ss_pred cCCChHHHHHHHHHHHHHhcCC-CCCcHHHHHH--cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 037562 248 WSDDNSLQLEATTLFINLLSFD-RSPPIDEVIQ--SGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHG 324 (670)
Q Consensus 248 ~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~--~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~ 324 (670)
.+.+.+.+..|+..|..+..+. .......+.+ ..++..+...+.+.. ..+...|+.++..++......-+... ..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~R-s~v~~~A~~~l~~l~~~l~~~~~~~~-~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLR-SKVSKTACQLLSDLARQLGSHFEPYA-DI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHH-HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHhHhHHHHH-HH
Confidence 4678899999999999998764 1222233322 145567777777766 68999999999999874433333333 24
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCC-CCh
Q 037562 325 AVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQ-PPF 403 (670)
Q Consensus 325 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~ 403 (670)
++|.|+..+.++...+++.|..+|..++...+.... .+...+.....+.++.++..++..+..+....+. ...
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~------~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK------ILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H------HHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH------HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence 688999999999999999999999999976541111 1133444444888899999999998888776541 111
Q ss_pred ----hhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHH
Q 037562 404 ----NQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQ 444 (670)
Q Consensus 404 ----~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~ 444 (670)
.....+++.+.+++.+.+++||..|-.++..+....++...
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~ 213 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE 213 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence 12256888899999999999999999999988655444433
No 128
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.85 E-value=0.0036 Score=65.13 Aligned_cols=254 Identities=15% Similarity=0.153 Sum_probs=164.9
Q ss_pred CcHHHHHHcCCHHHHHHhh---------cCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCC-----C
Q 037562 272 PPIDEVIQSGVVPRFVEFL---------MRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP-----S 337 (670)
Q Consensus 272 ~~~~~~~~~g~l~~L~~ll---------~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~-----~ 337 (670)
.....+....++..|.++- .....+.+...|.+||+|+...++..|+.+.+.|..+.++..|+.. +
T Consensus 13 ~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~ 92 (446)
T PF10165_consen 13 TGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQP 92 (446)
T ss_pred ccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCC
Confidence 3444455444555555544 2222379999999999999999999999999999999999999875 7
Q ss_pred HHHHHHHHHHHHHhhCCCchhHHHHHhc-CChHHHHHHhccc----------------CChhHHHHHHHHHHhhhcCCCC
Q 037562 338 VDVRKQTVWALGNVAGDSPRCRDLVLSQ-GALIPLLAELNEN----------------ANLSMLRTATWTLFNFCRGKPQ 400 (670)
Q Consensus 338 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~-~~i~~Ll~~l~~~----------------~~~~~~~~a~~~L~~l~~~~~~ 400 (670)
.++.....+.|.-++...+..+..+.+. +++..+...+... .+......++..+.|+....+.
T Consensus 93 ~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~ 172 (446)
T PF10165_consen 93 SDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPK 172 (446)
T ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCc
Confidence 8888889999988888777777666554 6677666665211 1334556788889999877654
Q ss_pred CChhhh----hhhHHHHHHhh---cc--CChhHHHHHHHHHHHhccCChHHH-----------HHHHHcCCHHHHHHhcC
Q 037562 401 PPFNQV----RPALPVLAQLI---RS--NDEEVLTDACWALSYLSDGTNDKV-----------QAVIEAGVYPRLVELLG 460 (670)
Q Consensus 401 ~~~~~~----~~~i~~L~~lL---~~--~~~~v~~~al~~L~~l~~~~~~~~-----------~~~~~~~~i~~L~~lL~ 460 (670)
...... ..++..+..++ .. +.......++.+|.|+--...... ........+..++.+|.
T Consensus 173 ~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld 252 (446)
T PF10165_consen 173 SVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLD 252 (446)
T ss_pred ccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHH
Confidence 433222 33444444442 11 135677888888888742211110 00111234555565554
Q ss_pred C----CC----ccchhHHHHHHHHhhcCCchhhHHHHh----------------CCChHHHHHhhccCCchhHHHHHHHH
Q 037562 461 H----SS----SSVLTPALRTIRNIVKGDDFQTQCIIN----------------CGALPYFLDMLVHNHEESIKKEVSWI 516 (670)
Q Consensus 461 ~----~~----~~v~~~a~~~L~~l~~~~~~~~~~l~~----------------~~~~~~L~~~l~~~~~~~v~~~a~~~ 516 (670)
. .. .+.....+.+|.+++......++.+.. ..+-..|+.++.+. .+.++..++..
T Consensus 253 ~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~-~~~~k~~vael 331 (446)
T PF10165_consen 253 KRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP-DPQLKDAVAEL 331 (446)
T ss_pred HHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC-CchHHHHHHHH
Confidence 3 11 245566777888888765444443321 23456788999888 69999999999
Q ss_pred HHHhhcCCHH
Q 037562 517 ISNITCGNRE 526 (670)
Q Consensus 517 L~~l~~~~~~ 526 (670)
+-.+|..+..
T Consensus 332 lf~Lc~~d~~ 341 (446)
T PF10165_consen 332 LFVLCKEDAS 341 (446)
T ss_pred HHHHHhhhHH
Confidence 9888765433
No 129
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.023 Score=61.89 Aligned_cols=357 Identities=17% Similarity=0.149 Sum_probs=200.2
Q ss_pred CCHHHHHHhhc------CC-CCHHHHHHHHHHHHHHcC---CChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 037562 281 GVVPRFVEFLM------RQ-DYPQLQFKAAWALTNIAS---GTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGN 350 (670)
Q Consensus 281 g~l~~L~~ll~------~~-~~~~v~~~a~~~L~~l~~---~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 350 (670)
++++.+++.+. .+ +++.-+.-|.+.+++++. .....+ -.++.-+++.+...++++..-+|..|+|+++.
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~-~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~ 488 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYK-SQMEYFLVNHVFPEFQSPYGYLRARACWVLSQ 488 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchH-HHHHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence 35566666665 22 236777788888888874 111111 12222334555666788889999999999999
Q ss_pred hhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCC---ChhhhhhhHHHHHHhhccCChhHHHH
Q 037562 351 VAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQP---PFNQVRPALPVLAQLIRSNDEEVLTD 427 (670)
Q Consensus 351 l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~i~~L~~lL~~~~~~v~~~ 427 (670)
++..+-.....+. .++....+.+.++.+-.|+..|+.+|..+..+.+.. ....+.+.++.++++.+.-+.+....
T Consensus 489 ~~~~df~d~~~l~--~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~ 566 (1010)
T KOG1991|consen 489 FSSIDFKDPNNLS--EALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTN 566 (1010)
T ss_pred HHhccCCChHHHH--HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHH
Confidence 9943322122222 256777788866788899999999999999887433 23334666677777776555444444
Q ss_pred HHHHH-HHhccCChHHHHHHHHcCCHHHHHHhcCC---CCccc---hhHHHHHHHHhhc------CCchhhHHHHhCCCh
Q 037562 428 ACWAL-SYLSDGTNDKVQAVIEAGVYPRLVELLGH---SSSSV---LTPALRTIRNIVK------GDDFQTQCIINCGAL 494 (670)
Q Consensus 428 al~~L-~~l~~~~~~~~~~~~~~~~i~~L~~lL~~---~~~~v---~~~a~~~L~~l~~------~~~~~~~~l~~~~~~ 494 (670)
++..+ +..+..-......+.. .+.....+++++ .++.. ...|.++|..+.. ..++..+ -.+...+
T Consensus 567 vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~~l 644 (1010)
T KOG1991|consen 567 VMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPIVL 644 (1010)
T ss_pred HHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHH
Confidence 44333 2222211111111222 455566677764 22222 2334444433321 1111111 2244566
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHH
Q 037562 495 PYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHL 574 (670)
Q Consensus 495 ~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l 574 (670)
+.+-.++++. -.++-+++...+..++...++....+. ++++.+.+.+.....+.-....-+|.|+...|.+.....-
T Consensus 645 ~vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~ 721 (1010)
T KOG1991|consen 645 PVIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNP 721 (1010)
T ss_pred HHHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccc
Confidence 6777777777 777778888888777664433222222 3677788888887888889999999999887654322110
Q ss_pred -HHcCCcHHHHhhccC--CChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhc-CCCHHHH
Q 037562 575 -VREGCVKPLCDLLLC--ADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQS-HDDNGIS 650 (670)
Q Consensus 575 -~~~~~i~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~-~~~~~v~ 650 (670)
...-.......++.+ ....-.+.|++.+..++-..... ..++...+. -.++..+.. .++...+
T Consensus 722 ~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg~---------~dq~iplf~----~~a~~~l~~~~e~s~~~ 788 (1010)
T KOG1991|consen 722 DYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKGL---------LDQYIPLFL----ELALSRLTREVETSELR 788 (1010)
T ss_pred hHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcCc---------HhhHhHHHH----HHHHHHHhccccchHHH
Confidence 001123333344443 22334456778887776554331 122344442 122344433 4556667
Q ss_pred HHHHHHHH
Q 037562 651 EKAVEILE 658 (670)
Q Consensus 651 ~~a~~~l~ 658 (670)
..+.+++-
T Consensus 789 ~~~leVvi 796 (1010)
T KOG1991|consen 789 VMLLEVVI 796 (1010)
T ss_pred HHHHHHHH
Confidence 66665543
No 130
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.82 E-value=0.0008 Score=73.85 Aligned_cols=292 Identities=14% Similarity=0.151 Sum_probs=183.2
Q ss_pred hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC----CC
Q 037562 326 VPIFVKLLAS-PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK----PQ 400 (670)
Q Consensus 326 i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~----~~ 400 (670)
++.+...+++ .....+..|+..|..++..... +..++ .++|.++.++ .+...+||..|+.+|..+...- +.
T Consensus 424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d--e~~LD-RVlPY~v~l~-~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDD--EVKLD-RVLPYFVHLL-MDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch--HHHHh-hhHHHHHHHh-cCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 3444444544 4556777888888888743321 11111 2578888888 7788899999998888765432 44
Q ss_pred CChhhhhhhHHHHHHhhcc-CChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 037562 401 PPFNQVRPALPVLAQLIRS-NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVK 479 (670)
Q Consensus 401 ~~~~~~~~~i~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 479 (670)
.......-++|.|..++.+ ....+|..-+.+|+.++.... .+++.+.-.....++.+++.+.... .
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~----rFle~~q~~~~~g~~n~~nset~~~---------~ 566 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY----RFLELTQELRQAGMLNDPNSETAPE---------Q 566 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH----HHHHHHHHHHhcccccCcccccccc---------c
Confidence 4555567788999999988 456778888888888874322 1222222223333445544331000 0
Q ss_pred CCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc--CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHH
Q 037562 480 GDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC--GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAW 557 (670)
Q Consensus 480 ~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 557 (670)
......+.+. .++-+....++.++ ++.||+.-...+..+|. +... -+.=+++.|+..|.+.|+.+|..-..
T Consensus 567 ~~~~~~~~L~-~~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFGk~k-----sND~iLshLiTfLNDkDw~LR~aFfd 639 (1431)
T KOG1240|consen 567 NYNTELQALH-HTVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFGKEK-----SNDVILSHLITFLNDKDWRLRGAFFD 639 (1431)
T ss_pred ccchHHHHHH-HHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhhhcc-----cccchHHHHHHHhcCccHHHHHHHHh
Confidence 0111122222 23455666777777 78899888888887775 1111 11226889999999999999887666
Q ss_pred HHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHH
Q 037562 558 AISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEK 637 (670)
Q Consensus 558 aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 637 (670)
.|.-++..-.... +++..+|.|.+-+.++.+.|...|+.++..+++.+--.+. .+.++ ++.
T Consensus 640 sI~gvsi~VG~rs----~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~---------~v~~i------~~~ 700 (1431)
T KOG1240|consen 640 SIVGVSIFVGWRS----VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKP---------AVKDI------LQD 700 (1431)
T ss_pred hccceEEEEeeee----HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchH---------HHHHH------HHh
Confidence 6664443211110 2344788889999999999999999999999987654321 12222 355
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHh
Q 037562 638 IENLQSHDDNGISEKAVEILETY 660 (670)
Q Consensus 638 l~~L~~~~~~~v~~~a~~~l~~~ 660 (670)
+.-|+-|+|.=|+..+..+|...
T Consensus 701 v~PlL~hPN~WIR~~~~~iI~~~ 723 (1431)
T KOG1240|consen 701 VLPLLCHPNLWIRRAVLGIIAAI 723 (1431)
T ss_pred hhhheeCchHHHHHHHHHHHHHH
Confidence 56678899999998887776554
No 131
>PF05536 Neurochondrin: Neurochondrin
Probab=97.78 E-value=0.0016 Score=69.34 Aligned_cols=236 Identities=14% Similarity=0.126 Sum_probs=165.0
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh---hHHHHHhCCChHHHHHhhCC-------CCHHHHHHHHHHHHHh
Q 037562 282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSE---NTKVVIDHGAVPIFVKLLAS-------PSVDVRKQTVWALGNV 351 (670)
Q Consensus 282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~---~~~~i~~~~~i~~L~~lL~~-------~~~~v~~~a~~~L~~l 351 (670)
.+..-+.+|+..+ ++-|..++-.+.++...++. .++.+.++=+.+.+-++|++ +....+.-|+.+|..+
T Consensus 6 ~l~~c~~lL~~~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 6 SLEKCLSLLKSAD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHhccCC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3566788898888 68899999999999986553 33457777777888889987 4467888999999999
Q ss_pred hCCCchhH--HHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHH
Q 037562 352 AGDSPRCR--DLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDAC 429 (670)
Q Consensus 352 ~~~~~~~~--~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al 429 (670)
|.. |+.. ..+. +-+|.+++.+....+..+...+..+|..++..+.........|.++.|...+.+ .+...+.++
T Consensus 85 ~~~-~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al 160 (543)
T PF05536_consen 85 CRD-PELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIAL 160 (543)
T ss_pred cCC-hhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence 974 3332 2222 259999999966666689999999999999776666666678999999999887 556677888
Q ss_pred HHHHHhccCChHHHHH---HHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchh-hHHH----HhCCChHHHHHhh
Q 037562 430 WALSYLSDGTNDKVQA---VIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQ-TQCI----INCGALPYFLDML 501 (670)
Q Consensus 430 ~~L~~l~~~~~~~~~~---~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-~~~l----~~~~~~~~L~~~l 501 (670)
.++.++........-. -.-..+++.+...........+..++..|+.+-...+.. .... .-..+...+..++
T Consensus 161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL 240 (543)
T PF05536_consen 161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL 240 (543)
T ss_pred HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence 8888876443311100 000134566666666667778888999999997755321 1111 1223455667777
Q ss_pred ccCCchhHHHHHHHHHHHhhc
Q 037562 502 VHNHEESIKKEVSWIISNITC 522 (670)
Q Consensus 502 ~~~~~~~v~~~a~~~L~~l~~ 522 (670)
++...+.-|..|....+.+..
T Consensus 241 ~sr~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 241 QSRLTPSQRDPALNLAASLLD 261 (543)
T ss_pred hcCCCHHHHHHHHHHHHHHHH
Confidence 777577777777777666654
No 132
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.78 E-value=3.7e-05 Score=84.44 Aligned_cols=147 Identities=16% Similarity=0.139 Sum_probs=85.9
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM 102 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L 102 (670)
+|+.|.+.++ +++.++.. ..++|+.|++++|. +..+|... +++|+.|+++ |.+++.+. ..+ .++|+.|
T Consensus 221 nL~~L~Ls~N-~LtsLP~~---l~~~L~~L~Ls~N~-L~~LP~~l--~s~L~~L~Ls-~N~L~~LP--~~l--~~sL~~L 288 (754)
T PRK15370 221 NIKTLYANSN-QLTSIPAT---LPDTIQEMELSINR-ITELPERL--PSALQSLDLF-HNKISCLP--ENL--PEELRYL 288 (754)
T ss_pred CCCEEECCCC-ccccCChh---hhccccEEECcCCc-cCcCChhH--hCCCCEEECc-CCccCccc--ccc--CCCCcEE
Confidence 7888888876 47766642 23577888887764 55555432 3467777776 34566541 111 2467777
Q ss_pred ccccccccceecccc-----------ccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCcccc
Q 037562 103 EIESCDKITEIVLVD-----------DVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIF 171 (670)
Q Consensus 103 ~i~~c~~l~~~~~~~-----------~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~ 171 (670)
++++| +++.++..- ..........+++|+.|.+.++. ++.++.. ..++|+.|++.+| ++..+
T Consensus 289 ~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~-Lt~LP~~----l~~sL~~L~Ls~N-~L~~L 361 (754)
T PRK15370 289 SVYDN-SIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENA-LTSLPAS----LPPELQVLDVSKN-QITVL 361 (754)
T ss_pred ECCCC-ccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCc-cccCChh----hcCcccEEECCCC-CCCcC
Confidence 77766 344433100 00000011234677777777763 5555432 1368888888887 46777
Q ss_pred ccCCcCCCCccceeeeecc
Q 037562 172 SGGELSTPNLHKVQLSRWD 190 (670)
Q Consensus 172 p~~~~~~~~L~~l~i~~~~ 190 (670)
|..+ .++|+.|+++++.
T Consensus 362 P~~l--p~~L~~LdLs~N~ 378 (754)
T PRK15370 362 PETL--PPTITTLDVSRNA 378 (754)
T ss_pred Chhh--cCCcCEEECCCCc
Confidence 7644 3688888887643
No 133
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.77 E-value=0.00024 Score=67.43 Aligned_cols=185 Identities=17% Similarity=0.199 Sum_probs=116.3
Q ss_pred cCCCCccchhHHHHHHHHhhcCC--chhhHHHHh--CCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhc
Q 037562 459 LGHSSSSVLTPALRTIRNIVKGD--DFQTQCIIN--CGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDS 534 (670)
Q Consensus 459 L~~~~~~v~~~a~~~L~~l~~~~--~~~~~~l~~--~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~ 534 (670)
-.+.+++.|..|+.-|..++.++ ......+.+ ..++..+...+.+. ...+...|+.++..++...........+
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~- 93 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYAD- 93 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHH-
Confidence 35678999999999999998766 222222221 14567777888877 8889999999999998743333433333
Q ss_pred CChHHHHHHhhcCChhHHHHHHHHHHHhcCCCC-HHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhh
Q 037562 535 GLIGPIVNLLQNTEFDTKKEAAWAISNATKFGT-HEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEM 613 (670)
Q Consensus 535 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~ 613 (670)
.++|.|+..+.++..-++..|..+|..++.... ... . .++.+....++.++.+|..++..+..++.......
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~--~-----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~ 166 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK--I-----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDS 166 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H--H-----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH--H-----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchH
Confidence 478899999988889999999999999998754 111 1 15667778899999999999999999887655111
Q ss_pred ccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562 614 NTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYW 661 (670)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~ 661 (670)
.. ... ... -....+.+.....+.+++||+.|..++..|+
T Consensus 167 ~~------l~~-~~~--~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 167 SV------LQK-SAF--LKQLVKALVKLLSDADPEVREAARECLWALY 205 (228)
T ss_dssp GG------G---HHH--HHHHHHHHHHHHTSS-HHHHHHHHHHHHHHH
T ss_pred hh------hcc-cch--HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 10 000 000 1223677888899999999999988887774
No 134
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=97.75 E-value=0.00015 Score=71.36 Aligned_cols=297 Identities=14% Similarity=0.109 Sum_probs=162.5
Q ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC-----CCchhHHHHHhcCChH-
Q 037562 296 PQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAG-----DSPRCRDLVLSQGALI- 369 (670)
Q Consensus 296 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~-----~~~~~~~~i~~~~~i~- 369 (670)
..+|..|..+|..++.+-.-.+..+++ ....+..-+.+..+.++..+..++..+.. ..|+..+.-...+.+-
T Consensus 269 s~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~ 346 (728)
T KOG4535|consen 269 SPMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWT 346 (728)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHH
Confidence 367777888888777633333333322 33444455667888999988888877652 2222211111112111
Q ss_pred -----HHHHHhcccCChhHHHHHHHHHHhhhcCC----CCCChhhhhhhHHHHH-HhhccCChhHHHHHHHHHHHhccCC
Q 037562 370 -----PLLAELNENANLSMLRTATWTLFNFCRGK----PQPPFNQVRPALPVLA-QLIRSNDEEVLTDACWALSYLSDGT 439 (670)
Q Consensus 370 -----~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~i~~L~-~lL~~~~~~v~~~al~~L~~l~~~~ 439 (670)
+.-....+...+..+..+|-++.++.... ++.+. ...+... ..=++.+.-++..|+++++.+.-+.
T Consensus 347 ~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~----T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp 422 (728)
T KOG4535|consen 347 MMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQ----TLCITFLLGCNDSKNRLVKAAASRALGVYVLHP 422 (728)
T ss_pred HHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcch----hhhHHHHhcccchHHHHHHHHHHhhceeEEecc
Confidence 11122233444567778888888887554 22111 1111111 1112334557888888888887666
Q ss_pred hHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcC----Cch---hhHHHHhCCChHHHHHhhc--cCCchhHH
Q 037562 440 NDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKG----DDF---QTQCIINCGALPYFLDMLV--HNHEESIK 510 (670)
Q Consensus 440 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~----~~~---~~~~l~~~~~~~~L~~~l~--~~~~~~v~ 510 (670)
.-......-......+...+.+..-..|..++|+++|++.. .+. ....+.- -.+..++..-. +..+..|+
T Consensus 423 ~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~ 501 (728)
T KOG4535|consen 423 CLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVK 501 (728)
T ss_pred chhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhh
Confidence 55544444446667777778887788999999999999742 121 2221211 11222222221 22267899
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHh-------cCChHHHHHH-hhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHH
Q 037562 511 KEVSWIISNITCGNREQIQAVID-------SGLIGPIVNL-LQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKP 582 (670)
Q Consensus 511 ~~a~~~L~~l~~~~~~~~~~l~~-------~~~i~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~ 582 (670)
..|..+|+|+..- .+.+.+ .+-+..+... .-.....|+-+||++++|+..+..-.....=....+++.
T Consensus 502 ~navraLgnllQv----lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~ 577 (728)
T KOG4535|consen 502 SNAVRALGNLLQF----LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNA 577 (728)
T ss_pred hHHHHHHhhHHHH----HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHH
Confidence 9999999998641 111111 1122222222 124567999999999999998632111000011224666
Q ss_pred HHhhcc-CCChHHHHHHHHHHH
Q 037562 583 LCDLLL-CADPKIVTVCLEGLE 603 (670)
Q Consensus 583 L~~ll~-~~~~~v~~~a~~~l~ 603 (670)
|..++. ..+-+||.+|..+|.
T Consensus 578 L~~Lv~~~~NFKVRi~AA~aL~ 599 (728)
T KOG4535|consen 578 LTSLVTSCKNFKVRIRAAAALS 599 (728)
T ss_pred HHHHHHHhccceEeehhhhhhc
Confidence 777663 456667766666553
No 135
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.02 Score=62.80 Aligned_cols=260 Identities=11% Similarity=0.094 Sum_probs=158.5
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhH
Q 037562 281 GVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSVDVRKQTVWALGNVAGDSPRCR 359 (670)
Q Consensus 281 g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~ 359 (670)
+++..|.+.+++.+ ..|+-.|++.++.++...|.. +. ..++...+.++.. +++..-..++-+|+.++...--.-
T Consensus 341 ~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~~---La-d~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp 415 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPPE---LA-DQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP 415 (1133)
T ss_pred HHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcHH---HH-HHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence 47888888999999 799999999999999866622 22 2356667775544 345666688999999985432211
Q ss_pred HHHHhcCChHHHHHHhcc-------cCChhHHHHHHHHHHhhhcCCCCC-ChhhhhhhHHH-HHHhhccCChhHHHHHHH
Q 037562 360 DLVLSQGALIPLLAELNE-------NANLSMLRTATWTLFNFCRGKPQP-PFNQVRPALPV-LAQLIRSNDEEVLTDACW 430 (670)
Q Consensus 360 ~~i~~~~~i~~Ll~~l~~-------~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~-L~~lL~~~~~~v~~~al~ 430 (670)
..+.+ +++.+++.+.. .....+|..||++++.+++..... .........+. +...+-+.+-.+|..|..
T Consensus 416 s~l~d--VvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsA 493 (1133)
T KOG1943|consen 416 SLLED--VVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASA 493 (1133)
T ss_pred HHHHH--HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHH
Confidence 22222 45556655522 234578999999999999876222 22222333332 223444667788888888
Q ss_pred HHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHh-hccCCchhH
Q 037562 431 ALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDM-LVHNHEESI 509 (670)
Q Consensus 431 ~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~-l~~~~~~~v 509 (670)
++.......... . .+++ ++...+.-....+.++...+..-....+.....++ ..++.. +.+- +..+
T Consensus 494 AlqE~VGR~~n~-p-----~Gi~-Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f-----~~L~t~Kv~HW-d~~i 560 (1133)
T KOG1943|consen 494 ALQENVGRQGNF-P-----HGIS-LISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVF-----NHLLTKKVCHW-DVKI 560 (1133)
T ss_pred HHHHHhccCCCC-C-----Cchh-hhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHH-----HHHHhcccccc-cHHH
Confidence 887665331111 0 1111 22222222233455555555544444444444332 233333 5566 8999
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcC
Q 037562 510 KKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATK 564 (670)
Q Consensus 510 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 564 (670)
|+.|+++|.+++...++ ......++.+++...+.+...+.-+..+.+.++.
T Consensus 561 relaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 561 RELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred HHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 99999999998765444 2445688999998888888887777666666654
No 136
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.75 E-value=5.2e-05 Score=59.49 Aligned_cols=86 Identities=30% Similarity=0.417 Sum_probs=69.8
Q ss_pred HHHHHHHh-cCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562 240 LPAMVDGV-WSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK 318 (670)
Q Consensus 240 i~~l~~~l-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 318 (670)
|+.|++.+ +++++.++..|+++|.++-.. ..++.|++++++++ +.+|..|+++|+.+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~------------~~~~~L~~~l~d~~-~~vr~~a~~aL~~i~~------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDP------------EAIPALIELLKDED-PMVRRAAARALGRIGD------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHH------------HHHHHHHHHHTSSS-HHHHHHHHHHHHCCHH-------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCH------------hHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-------
Confidence 57889988 788999999999999844111 25899999998888 8999999999998842
Q ss_pred HHHhCCChHHHHHhhCC-CCHHHHHHHHHHHH
Q 037562 319 VVIDHGAVPIFVKLLAS-PSVDVRKQTVWALG 349 (670)
Q Consensus 319 ~i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~ 349 (670)
...++.|.+++.+ ++..++..|+.+|+
T Consensus 61 ----~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 ----PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ----HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 2378999998877 45667999998875
No 137
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.71 E-value=0.014 Score=57.54 Aligned_cols=222 Identities=14% Similarity=0.134 Sum_probs=164.0
Q ss_pred hccHHHHHHHhcCCChHHHHHHHHHHHHHhcCC----CCCc----HHHHHHcCCHHHHHHhhcCCC-----CHHHHHHHH
Q 037562 237 LEILPAMVDGVWSDDNSLQLEATTLFINLLSFD----RSPP----IDEVIQSGVVPRFVEFLMRQD-----YPQLQFKAA 303 (670)
Q Consensus 237 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~----~~~~----~~~~~~~g~l~~L~~ll~~~~-----~~~v~~~a~ 303 (670)
+.+++.++++|.+++.++....+..+..+...+ +.+. ++.+++.++++.|++-+..=+ ..+-...+.
T Consensus 124 ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L 203 (536)
T KOG2734|consen 124 LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL 203 (536)
T ss_pred hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence 467899999999999999999999998885432 1221 566778899999988776432 134556678
Q ss_pred HHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc----c
Q 037562 304 WALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELN----E 377 (670)
Q Consensus 304 ~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~----~ 377 (670)
..+-|+..-.+.....+++.|.+..|+.-+.. +-...+..|..++.-+..++.+.+......+++..+++.+. +
T Consensus 204 ~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~ 283 (536)
T KOG2734|consen 204 AVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRH 283 (536)
T ss_pred HHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhcc
Confidence 88899998889999999999999998885543 45566778889999888888878888888888999988773 1
Q ss_pred c----CChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCh--HHHHHHHHcCC
Q 037562 378 N----ANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTN--DKVQAVIEAGV 451 (670)
Q Consensus 378 ~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~--~~~~~~~~~~~ 451 (670)
+ ...++..+...+|+.+.....+........+++...-+++. ....+..++.+|-....+++ .+...+++..+
T Consensus 284 dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lG 362 (536)
T KOG2734|consen 284 DPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILG 362 (536)
T ss_pred CCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHh
Confidence 1 13356677778888777776666555556677766656654 45667788888888876666 56666777776
Q ss_pred HHHHHHhc
Q 037562 452 YPRLVELL 459 (670)
Q Consensus 452 i~~L~~lL 459 (670)
+..+....
T Consensus 363 LrtiF~~F 370 (536)
T KOG2734|consen 363 LRTIFPLF 370 (536)
T ss_pred HHHHHHHH
Confidence 66666553
No 138
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.69 E-value=1.7e-05 Score=88.50 Aligned_cols=126 Identities=20% Similarity=0.291 Sum_probs=100.0
Q ss_pred ccCCCCcEEEEecCCCCccccCC-----Cc-cccccceeeecccccccccccchhhhcccccceeccccccccceecccc
Q 037562 44 SVMNNLVILCVHCCDHLINLVPS-----ST-SFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVD 117 (670)
Q Consensus 44 ~~~~~L~~L~i~~c~~l~~~~~~-----~~-~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~ 117 (670)
..+.+|+.|.|.+|...+..... .. +|++|..+.+.+|..++.+ .|....|+|+.|++.+|+.+++++...
T Consensus 714 ~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l---~~~~f~~~L~~l~l~~~~~~e~~i~~~ 790 (889)
T KOG4658|consen 714 GSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDL---TWLLFAPHLTSLSLVSCRLLEDIIPKL 790 (889)
T ss_pred ccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccccc---chhhccCcccEEEEecccccccCCCHH
Confidence 56889999999999876432211 12 3889999999999999987 677788999999999999999887644
Q ss_pred cccccc--ccccccccccc-cccccccccccccCCcccCCCCccEEeEecCCCccccccC
Q 037562 118 DVVAQD--EVITFRELKEL-NLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGG 174 (670)
Q Consensus 118 ~~~~~~--~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~ 174 (670)
...... ....|+++..+ .+.+.+.+++++.. +..+|+|+.+.+..||++.++|..
T Consensus 791 k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~--~l~~~~l~~~~ve~~p~l~~~P~~ 848 (889)
T KOG4658|consen 791 KALLELKELILPFNKLEGLRMLCSLGGLPQLYWL--PLSFLKLEELIVEECPKLGKLPLL 848 (889)
T ss_pred HHhhhcccEEecccccccceeeecCCCCceeEec--ccCccchhheehhcCcccccCccc
Confidence 332211 24678899999 69999999998874 566788999999999999999864
No 139
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.015 Score=57.41 Aligned_cols=238 Identities=13% Similarity=0.130 Sum_probs=165.1
Q ss_pred HHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC---------hhhHHHHHhCCChHHHH
Q 037562 260 TLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGT---------SENTKVVIDHGAVPIFV 330 (670)
Q Consensus 260 ~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~---------~~~~~~i~~~~~i~~L~ 330 (670)
+.+.-++.. ++-...+++.++++.++.+|.+.+ .+|..+.+..+..++..+ ..-.+.+++.++++.|+
T Consensus 106 Q~mhvlAt~--PdLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv 182 (536)
T KOG2734|consen 106 QEMHVLATM--PDLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV 182 (536)
T ss_pred HHHHhhhcC--hHHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence 344444443 555667889999999999999999 799999999999988633 23456778889999999
Q ss_pred HhhCCCCHHH------HHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccc-CChhHHHHHHHHHHhhhcCCCC-CC
Q 037562 331 KLLASPSVDV------RKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEN-ANLSMLRTATWTLFNFCRGKPQ-PP 402 (670)
Q Consensus 331 ~lL~~~~~~v------~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~-~~~~~~~~a~~~L~~l~~~~~~-~~ 402 (670)
+-+..-++.+ ...++..+-|+....+.....+.+.|.+.-|+..+... .-..-..+|..+++-+..++.. ..
T Consensus 183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~ 262 (536)
T KOG2734|consen 183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRK 262 (536)
T ss_pred HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhh
Confidence 9876533333 34677888899888888888888888888888765333 3335566788888887776642 22
Q ss_pred hhhhhhhHHHHHHhhc----cC-----ChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHH
Q 037562 403 FNQVRPALPVLAQLIR----SN-----DEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRT 473 (670)
Q Consensus 403 ~~~~~~~i~~L~~lL~----~~-----~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~ 473 (670)
....-.++..+++-+. ++ ..+..++...+|+.+..... ....++...+++...-+++. ....+..|+.+
T Consensus 263 ~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~-nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Salkv 340 (536)
T KOG2734|consen 263 LLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPA-NRERFLKGEGLQLMNLMLRE-KKVSRGSALKV 340 (536)
T ss_pred hhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChh-hhhhhhccccHHHHHHHHHH-HHHhhhhHHHH
Confidence 2222345555544432 21 24677788888888776654 44556776777777766666 44567788999
Q ss_pred HHHhhcCCc--hhhHHHHhCCChHHHHHhhc
Q 037562 474 IRNIVKGDD--FQTQCIINCGALPYFLDMLV 502 (670)
Q Consensus 474 L~~l~~~~~--~~~~~l~~~~~~~~L~~~l~ 502 (670)
|-....+.+ ..+..+++..++..+.....
T Consensus 341 Ld~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 341 LDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred HHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 988888776 56677777777777666654
No 140
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.67 E-value=0.0029 Score=58.02 Aligned_cols=224 Identities=18% Similarity=0.258 Sum_probs=148.3
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-CHHHHHHHHHHHHHHcCCChhhHH
Q 037562 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQD-YPQLQFKAAWALTNIASGTSENTK 318 (670)
Q Consensus 240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~-~~~v~~~a~~~L~~l~~~~~~~~~ 318 (670)
+..+.+...++....+..++.+|.++-. ...++.++..+.+.+ .+-||..|+.+|+.+..
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~~~------------~~Av~~l~~vl~desq~pmvRhEAaealga~~~------- 98 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQMQD------------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD------- 98 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhhcc------------chhhHHHHHHhcccccchHHHHHHHHHHHhhcc-------
Confidence 4444444444433444455556655522 236888888876543 37899999999999874
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC---------------chhHHHHHhcCChHHHHHHhcccCChhH
Q 037562 319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDS---------------PRCRDLVLSQGALIPLLAELNENANLSM 383 (670)
Q Consensus 319 ~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~---------------~~~~~~i~~~~~i~~Ll~~l~~~~~~~~ 383 (670)
...++.+-++.+++-..+++.+..++..+-..+ |... ...+-+..+-..+.+.+.+..
T Consensus 99 ----~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p---~~~ssv~~lr~~lld~t~~l~ 171 (289)
T KOG0567|consen 99 ----PESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPP---ANLSSVHELRAELLDETKPLF 171 (289)
T ss_pred ----hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCc---cccccHHHHHHHHHhcchhHH
Confidence 245677777777788888888777777764211 1111 011224444444544444444
Q ss_pred HH-HHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC-
Q 037562 384 LR-TATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH- 461 (670)
Q Consensus 384 ~~-~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~- 461 (670)
.+ .|.+.|.|+-. ...+..+..-+..++.-.+..+..+++.+-.. -.++.+.+.|.+
T Consensus 172 ~Ry~amF~LRn~g~----------EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~-----------~ai~~L~k~L~d~ 230 (289)
T KOG0567|consen 172 ERYRAMFYLRNIGT----------EEAINALIDGLADDSALFRHEVAFVFGQLQSP-----------AAIPSLIKVLLDE 230 (289)
T ss_pred HHHhhhhHhhccCc----------HHHHHHHHHhcccchHHHHHHHHHHHhhccch-----------hhhHHHHHHHHhh
Confidence 33 66677777654 34667788888888888999999999987532 345667777765
Q ss_pred -CCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc
Q 037562 462 -SSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC 522 (670)
Q Consensus 462 -~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 522 (670)
.++-||..|+.+|+.++. + ..++.|.+.+.+. .+-|++.+..++..+-.
T Consensus 231 ~E~pMVRhEaAeALGaIa~--e---------~~~~vL~e~~~D~-~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 231 TEHPMVRHEAAEALGAIAD--E---------DCVEVLKEYLGDE-ERVVRESCEVALDMLEY 280 (289)
T ss_pred hcchHHHHHHHHHHHhhcC--H---------HHHHHHHHHcCCc-HHHHHHHHHHHHHHHHH
Confidence 466799999999998875 2 2456777888888 88888888888876643
No 141
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.0015 Score=68.19 Aligned_cols=262 Identities=15% Similarity=0.167 Sum_probs=152.5
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 037562 282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDL 361 (670)
Q Consensus 282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 361 (670)
....|.+.|++.+++.++.-++--|+-.+.++.. ..+.+.+-..|...+.-.-+.|..+++-+.-+... .+
T Consensus 414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~-------~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~-~e- 484 (929)
T KOG2062|consen 414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSAN-------EEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTAN-QE- 484 (929)
T ss_pred HHHHHHHHHHhccchhhhhhhhhhccchhccccc-------HHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCc-HH-
Confidence 4556666666665566676666666655543321 11234555556555555555555555555433221 11
Q ss_pred HHhcCChHHHHHHhcccCChhHHHHHHH--HHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHH--hcc
Q 037562 362 VLSQGALIPLLAELNENANLSMLRTATW--TLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSY--LSD 437 (670)
Q Consensus 362 i~~~~~i~~Ll~~l~~~~~~~~~~~a~~--~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~--l~~ 437 (670)
++.-++..-.......+++-..- +|....+. ..+=+.+-+++.+.|+-+|...+.+++- ...
T Consensus 485 -----aiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrq---------e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GT 550 (929)
T KOG2062|consen 485 -----AIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQ---------EDADPLIKELLRDKDPILRYGGMYTLALAYVGT 550 (929)
T ss_pred -----HHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhh---------hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhcc
Confidence 23444444444444555553222 23333332 2344667778888888888776655532 222
Q ss_pred CChHHHHHHHHcCCHHHHHHh-cCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHH
Q 037562 438 GTNDKVQAVIEAGVYPRLVEL-LGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWI 516 (670)
Q Consensus 438 ~~~~~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~ 516 (670)
.+ .+++..++.. +++.+.+||..|..+|+-++..+++ ..+..+++|....++.||..|+.+
T Consensus 551 gn---------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~---------~~~s~V~lLses~N~HVRyGaA~A 612 (929)
T KOG2062|consen 551 GN---------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE---------QLPSTVSLLSESYNPHVRYGAAMA 612 (929)
T ss_pred Cc---------hhhHHHhhcccccccchHHHHHHHHHheeeEecChh---------hchHHHHHHhhhcChhhhhhHHHH
Confidence 21 2566777777 6778899999999999998886665 355667888777699999999999
Q ss_pred HHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChH
Q 037562 517 ISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPK 593 (670)
Q Consensus 517 L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 593 (670)
|+-.|++.... ..+..|-.+..+...-||+.|+.+++-+....++..... -.+..+.+.+.+.+++.+
T Consensus 613 LGIaCAGtG~~-------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pk--v~~frk~l~kvI~dKhEd 680 (929)
T KOG2062|consen 613 LGIACAGTGLK-------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPK--VNGFRKQLEKVINDKHED 680 (929)
T ss_pred HhhhhcCCCcH-------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCch--HHHHHHHHHHHhhhhhhH
Confidence 99998853321 123333444456667789999988887765433221111 122344455555554444
No 142
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.01 Score=54.54 Aligned_cols=224 Identities=14% Similarity=0.178 Sum_probs=135.3
Q ss_pred hHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccC--ChhHHHHHHHHHHHhccCChHHHHH
Q 037562 368 LIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSN--DEEVLTDACWALSYLSDGTNDKVQA 445 (670)
Q Consensus 368 i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~al~~L~~l~~~~~~~~~~ 445 (670)
+..+.+.. .+.+...+..++++|...... ..+|.++..+... .+-||..|..+|+.+...
T Consensus 38 i~~i~ka~-~d~s~llkhe~ay~LgQ~~~~----------~Av~~l~~vl~desq~pmvRhEAaealga~~~~------- 99 (289)
T KOG0567|consen 38 IKAITKAF-IDDSALLKHELAYVLGQMQDE----------DAVPVLVEVLLDESQEPMVRHEAAEALGAIGDP------- 99 (289)
T ss_pred HHHHHHhc-ccchhhhccchhhhhhhhccc----------hhhHHHHHHhcccccchHHHHHHHHHHHhhcch-------
Confidence 33444444 223444555667777766653 4677888777654 467788888888887621
Q ss_pred HHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhh----HHH--------HhCCChHHHHHhhccCCchh-HHHH
Q 037562 446 VIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQT----QCI--------INCGALPYFLDMLVHNHEES-IKKE 512 (670)
Q Consensus 446 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~----~~l--------~~~~~~~~L~~~l~~~~~~~-v~~~ 512 (670)
...+.+-+..+++-..|+..+..++..+-....... ... ...+-+..+-..+.+...+. -|..
T Consensus 100 ----~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~ 175 (289)
T KOG0567|consen 100 ----ESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYR 175 (289)
T ss_pred ----hhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHh
Confidence 334555566666667777777777766643221110 000 01122333444443332222 3445
Q ss_pred HHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhc--cCC
Q 037562 513 VSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLL--LCA 590 (670)
Q Consensus 513 a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll--~~~ 590 (670)
|.+.|.|+.. ++ .+..+++-+..++.-.|.+++++++.+-... .|+.|.+.| ..+
T Consensus 176 amF~LRn~g~--Ee---------aI~al~~~l~~~SalfrhEvAfVfGQl~s~~------------ai~~L~k~L~d~~E 232 (289)
T KOG0567|consen 176 AMFYLRNIGT--EE---------AINALIDGLADDSALFRHEVAFVFGQLQSPA------------AIPSLIKVLLDETE 232 (289)
T ss_pred hhhHhhccCc--HH---------HHHHHHHhcccchHHHHHHHHHHHhhccchh------------hhHHHHHHHHhhhc
Confidence 6666666621 22 3455566666667788889999998886632 566676666 346
Q ss_pred ChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 037562 591 DPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETY 660 (670)
Q Consensus 591 ~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~ 660 (670)
++.||+-|..||+.+... ..++.|.++.+++.+-|++-+..+++-+
T Consensus 233 ~pMVRhEaAeALGaIa~e------------------------~~~~vL~e~~~D~~~vv~esc~valdm~ 278 (289)
T KOG0567|consen 233 HPMVRHEAAEALGAIADE------------------------DCVEVLKEYLGDEERVVRESCEVALDML 278 (289)
T ss_pred chHHHHHHHHHHHhhcCH------------------------HHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 788899999998875521 1256678888888888888888777755
No 143
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.60 E-value=0.00037 Score=54.84 Aligned_cols=95 Identities=18% Similarity=0.256 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhcc
Q 037562 509 IKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLL 588 (670)
Q Consensus 509 v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~ 588 (670)
.|..+..+|+.++.+-+.......+ .+++.++..+.+++.+||..|+.+|.+++.....+...++- .+++.|.++..
T Consensus 2 ~R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~--~IF~~L~kl~~ 78 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFN--EIFDALCKLSA 78 (97)
T ss_pred chhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHc
Confidence 3667788888887654444444443 48899999999999999999999999999864444444333 48899999999
Q ss_pred CCChHHHHHHHHHHHHHHH
Q 037562 589 CADPKIVTVCLEGLENILK 607 (670)
Q Consensus 589 ~~~~~v~~~a~~~l~~l~~ 607 (670)
+.++.|+..| ..|.++++
T Consensus 79 D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 79 DPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred CCchhHHHHH-HHHHHHhc
Confidence 9999988665 77777664
No 144
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.60 E-value=0.014 Score=60.89 Aligned_cols=260 Identities=15% Similarity=0.109 Sum_probs=166.1
Q ss_pred hcchhhhhhccccCCCccccchhhhhhccHHHHHHHh----------cCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHc
Q 037562 211 KKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGV----------WSDDNSLQLEATTLFINLLSFDRSPPIDEVIQS 280 (670)
Q Consensus 211 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l----------~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 280 (670)
++++.+.+++......... +.+..|++.- ...+..+..+|+++|+|+.-.. ...++.+.+.
T Consensus 3 ~~LRiLsRd~~~~~~l~~~--------~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~ 73 (446)
T PF10165_consen 3 ETLRILSRDPTGLDPLFTE--------EGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLS-PSARQIFVDL 73 (446)
T ss_pred HHHHHHccCcccchhhccH--------HHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHc
Confidence 4555566666555444432 2345555544 2567899999999999998764 5556777889
Q ss_pred CCHHHHHHhhcCC-----CCHHHHHHHHHHHHHHcCCChhhHHHHHhC-CChHHHHHhhCC-----------------CC
Q 037562 281 GVVPRFVEFLMRQ-----DYPQLQFKAAWALTNIASGTSENTKVVIDH-GAVPIFVKLLAS-----------------PS 337 (670)
Q Consensus 281 g~l~~L~~ll~~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-~~i~~L~~lL~~-----------------~~ 337 (670)
|..+.+++.++.. + .++.....+.|.-++...+..+..+++. +++..+...+.. .+
T Consensus 74 ~~~~~l~~~Lk~~~~~~~~-~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~ 152 (446)
T PF10165_consen 74 GLAEKLCERLKNYSDSSQP-SDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMD 152 (446)
T ss_pred CcHHHHHHHHHcccccCCC-hhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcch
Confidence 9999999999876 4 7999999999999998788888777655 677777665521 13
Q ss_pred HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccc--------CChhHHHHHHHHHHhhhcCCCC--------C
Q 037562 338 VDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEN--------ANLSMLRTATWTLFNFCRGKPQ--------P 401 (670)
Q Consensus 338 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~--------~~~~~~~~a~~~L~~l~~~~~~--------~ 401 (670)
......++.++.|+..+.+.... -.....++.++..+... .......++..+|.|+--.... .
T Consensus 153 ~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~ 231 (446)
T PF10165_consen 153 EEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQ 231 (446)
T ss_pred HHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCc
Confidence 44566788899999865544322 01223455555554322 1235666888888877321100 0
Q ss_pred ----ChhhhhhhHHHHHHhhcc----C----ChhHHHHHHHHHHHhccCChHHHHHHHH----------------cCCHH
Q 037562 402 ----PFNQVRPALPVLAQLIRS----N----DEEVLTDACWALSYLSDGTNDKVQAVIE----------------AGVYP 453 (670)
Q Consensus 402 ----~~~~~~~~i~~L~~lL~~----~----~~~v~~~al~~L~~l~~~~~~~~~~~~~----------------~~~i~ 453 (670)
........+..++.+|.. . -.+.....+.+|.+++.......+.+.. ..+-.
T Consensus 232 ~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~ 311 (446)
T PF10165_consen 232 SSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRS 311 (446)
T ss_pred ccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHH
Confidence 001113455555555541 1 1357777888888888775544433322 13556
Q ss_pred HHHHhcCCCCccchhHHHHHHHHhhcCC
Q 037562 454 RLVELLGHSSSSVLTPALRTIRNIVKGD 481 (670)
Q Consensus 454 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 481 (670)
.|++++.+..+.++..+...+..+|..+
T Consensus 312 rLlrLmt~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 312 RLLRLMTSPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHHhhh
Confidence 7888888877888888888888887643
No 145
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.57 E-value=0.00012 Score=51.21 Aligned_cols=55 Identities=24% Similarity=0.552 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHh
Q 037562 507 ESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNA 562 (670)
Q Consensus 507 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 562 (670)
+.+|..|+++|++++...+....... ..+++.|+.++.++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46899999999999877777666644 46899999999999999999999999875
No 146
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.039 Score=61.37 Aligned_cols=238 Identities=13% Similarity=0.025 Sum_probs=144.2
Q ss_pred HHHHHhcccCChhHHHHHHHHHHhhhcCCCCC--ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHH
Q 037562 370 PLLAELNENANLSMLRTATWTLFNFCRGKPQP--PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVI 447 (670)
Q Consensus 370 ~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~ 447 (670)
.+.....++.+..+|..+...|..++...+.. .......+...+.+-+++.+...+...+.++..+....+.....++
T Consensus 657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 657 TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 34444545667899999999999999884222 2222355666777777788888999999999988866552222233
Q ss_pred HcCCHHHHHHhcCCCCccchhHHHHHHHHhhc--CC-c---hhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhh
Q 037562 448 EAGVYPRLVELLGHSSSSVLTPALRTIRNIVK--GD-D---FQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNIT 521 (670)
Q Consensus 448 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~--~~-~---~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~ 521 (670)
..-+.+.++.+ +..+...|..|..+|-.++. .. + +.....+ ..++..+...+..+ ...+......++..+.
T Consensus 737 ~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~l-nefl~~Isagl~gd-~~~~~as~Ivai~~il 813 (1176)
T KOG1248|consen 737 PKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAIL-NEFLSIISAGLVGD-STRVVASDIVAITHIL 813 (1176)
T ss_pred HHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHH-HHHHHHHHhhhccc-HHHHHHHHHHHHHHHH
Confidence 32333444444 77777888888888888773 10 0 0001111 11233333333333 3333322244455444
Q ss_pred cCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHH
Q 037562 522 CGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEG 601 (670)
Q Consensus 522 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~ 601 (670)
.........-.-.+++..+.-.+.+++.++++.|+.++..++............ ..+++.+..+.++....++.++-..
T Consensus 814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~-~~LL~sll~ls~d~k~~~r~Kvr~L 892 (1176)
T KOG1248|consen 814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL-EELLPSLLALSHDHKIKVRKKVRLL 892 (1176)
T ss_pred HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH-HHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 321111111111234555556677889999999999999999875444433322 2378888888888889999999888
Q ss_pred HHHHHHhhhh
Q 037562 602 LENILKVGVA 611 (670)
Q Consensus 602 l~~l~~~~~~ 611 (670)
+..+++....
T Consensus 893 lekLirkfg~ 902 (1176)
T KOG1248|consen 893 LEKLIRKFGA 902 (1176)
T ss_pred HHHHHHHhCH
Confidence 8888775443
No 147
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.56 E-value=0.016 Score=62.27 Aligned_cols=309 Identities=11% Similarity=0.071 Sum_probs=181.8
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHH
Q 037562 249 SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPI 328 (670)
Q Consensus 249 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~ 328 (670)
++-|.....|.+++...++.. .....+.+. ++...+..+.-+..+-++..|++++...+. ......+ ..+++..
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~--~~~~~~~~~-fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~-~p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSST--VINPQLLQH-FLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSL-QPMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhh--ccchhHHHH-HHHHHHHhhccCCCCchhHHHHHHHHhccC--ceecccc-chHHHHH
Confidence 455666668888888775541 111222222 344445555544447888899999888874 2222222 2367788
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHh-cccCChhHHHHHHHHHHhhhcCCCCCChhhhh
Q 037562 329 FVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAEL-NENANLSMLRTATWTLFNFCRGKPQPPFNQVR 407 (670)
Q Consensus 329 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 407 (670)
+.++....+.++....+.+|+..+..+|+.... .+..+.|-.+.+. ..+.|+.+...+--++-.++... ...-....
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~~~g~m~e 612 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-ANYGPMQE 612 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-HhhcchHH
Confidence 888888888999999999999999988875443 3444566555554 34567766666666666666532 12222346
Q ss_pred hhHHHHHHhhccCC----hhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhc-CCCCccchhHHHHHHHHhhcCCc
Q 037562 408 PALPVLAQLIRSND----EEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELL-GHSSSSVLTPALRTIRNIVKGDD 482 (670)
Q Consensus 408 ~~i~~L~~lL~~~~----~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~ 482 (670)
..+|.++..++.++ .....-++..|..+.++.+.-....+-.-+++.+.++. .+++..+...+-.||..+.....
T Consensus 613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~ 692 (1005)
T KOG2274|consen 613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTL 692 (1005)
T ss_pred HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence 78999999998776 66677777777766654332222223334667777765 55667788889999988887654
Q ss_pred hhhHHHHhCCChH--HHHHhhccCCchhHHHHHHHHHHHhhc----CCHHHHHHHHhcCChHHHH-HHhhcCChhHHHHH
Q 037562 483 FQTQCIINCGALP--YFLDMLVHNHEESIKKEVSWIISNITC----GNREQIQAVIDSGLIGPIV-NLLQNTEFDTKKEA 555 (670)
Q Consensus 483 ~~~~~l~~~~~~~--~L~~~l~~~~~~~v~~~a~~~L~~l~~----~~~~~~~~l~~~~~i~~L~-~ll~~~~~~v~~~a 555 (670)
++...--..++.. .+++.+..--+++.-..++..++.+.. +-.......+. .++..++ ++-..+...+...-
T Consensus 693 eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d-~IL~Avisrmq~ae~lsviQsL 771 (1005)
T KOG2274|consen 693 EQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLD-QILRAVISRLQQAETLSVIQSL 771 (1005)
T ss_pred HHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHH-HHHHHHHHHHHHhhhHHHHHHH
Confidence 4433222333333 333332211133344444545555433 21211111111 1222333 33335667888888
Q ss_pred HHHHHHhcCCC
Q 037562 556 AWAISNATKFG 566 (670)
Q Consensus 556 ~~aL~~l~~~~ 566 (670)
+.+++++....
T Consensus 772 i~VfahL~~t~ 782 (1005)
T KOG2274|consen 772 IMVFAHLVHTD 782 (1005)
T ss_pred HHHHHHHhhCC
Confidence 88888888763
No 148
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.54 E-value=0.00013 Score=80.29 Aligned_cols=140 Identities=13% Similarity=0.134 Sum_probs=88.3
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM 102 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L 102 (670)
+|+.|.+.++ +++.+|.. .+++|+.|++++| +++.+|.. .+++|+.|++++|. ++.+ +..+ .++|+.|
T Consensus 200 ~L~~L~Ls~N-~LtsLP~~---l~~nL~~L~Ls~N-~LtsLP~~--l~~~L~~L~Ls~N~-L~~L--P~~l--~s~L~~L 267 (754)
T PRK15370 200 QITTLILDNN-ELKSLPEN---LQGNIKTLYANSN-QLTSIPAT--LPDTIQEMELSINR-ITEL--PERL--PSALQSL 267 (754)
T ss_pred CCcEEEecCC-CCCcCChh---hccCCCEEECCCC-ccccCChh--hhccccEEECcCCc-cCcC--ChhH--hCCCCEE
Confidence 7999999876 68888753 3469999999987 47777654 34689999999984 5554 1222 3589999
Q ss_pred ccccccccceeccccccccccccccccccccccccccccccccccCC-----------------cccCCCCccEEeEecC
Q 037562 103 EIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGN-----------------CAFTFPSLEILVVNYC 165 (670)
Q Consensus 103 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-----------------~~~~~~~L~~L~i~~C 165 (670)
++++ .+++.++.. .+++|+.|.++++ +|+.++... .....++|+.|.+.+|
T Consensus 268 ~Ls~-N~L~~LP~~----------l~~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N 335 (754)
T PRK15370 268 DLFH-NKISCLPEN----------LPEELRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGEN 335 (754)
T ss_pred ECcC-CccCccccc----------cCCCCcEEECCCC-ccccCcccchhhHHHHHhcCCccccCCccccccceeccccCC
Confidence 9974 466655421 1235556655554 333332110 0012356777777776
Q ss_pred CCccccccCCcCCCCccceeeeec
Q 037562 166 PNMKIFSGGELSTPNLHKVQLSRW 189 (670)
Q Consensus 166 ~~l~~~p~~~~~~~~L~~l~i~~~ 189 (670)
++..+|..+ .++|+.|++++.
T Consensus 336 -~Lt~LP~~l--~~sL~~L~Ls~N 356 (754)
T PRK15370 336 -ALTSLPASL--PPELQVLDVSKN 356 (754)
T ss_pred -ccccCChhh--cCcccEEECCCC
Confidence 366677544 367787777654
No 149
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.0041 Score=65.53 Aligned_cols=285 Identities=16% Similarity=0.134 Sum_probs=156.7
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 037562 282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDL 361 (670)
Q Consensus 282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 361 (670)
..+.+-..+.+.. .-+...|++++..+....+.... ..+..+-.++.++...+|..|.++|..++...|..
T Consensus 246 ~~~fl~s~l~~K~-emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~--- 316 (865)
T KOG1078|consen 246 LFPFLESCLRHKS-EMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQA--- 316 (865)
T ss_pred HHHHHHHHHhchh-HHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcc---
Confidence 3445555666666 78999999999998764433221 26777888888999999999999999999766542
Q ss_pred HHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChH
Q 037562 362 VLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTND 441 (670)
Q Consensus 362 i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~ 441 (670)
+..+ -.-+-.++ .+.+.. -|..++..+..............-++..+.=+.++..-+...++.+++..- +.
T Consensus 317 v~~c--N~elE~lI-td~Nrs---Iat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~f---p~ 387 (865)
T KOG1078|consen 317 VTVC--NLDLESLI-TDSNRS---IATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKF---PR 387 (865)
T ss_pred cccc--chhHHhhh-cccccc---hhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhc---cH
Confidence 1111 11122222 222222 233333333332211112222222222222222233334444444444432 21
Q ss_pred HHHHHHHcCCHHHHHHhcCC-CCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHh
Q 037562 442 KVQAVIEAGVYPRLVELLGH-SSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNI 520 (670)
Q Consensus 442 ~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l 520 (670)
. ..+.+..|..+|.. +.-+.+.....++..+...+++... .++..|...+.+. +...-+...+.-+
T Consensus 388 k-----~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc---e~~~i~~rILhlL 454 (865)
T KOG1078|consen 388 K-----HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC---EFTQIAVRILHLL 454 (865)
T ss_pred H-----HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc---cchHHHHHHHHHH
Confidence 1 12445556666655 3446777778888777776655433 3566677777655 4455566666666
Q ss_pred hcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHH
Q 037562 521 TCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLE 600 (670)
Q Consensus 521 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 600 (670)
....|... .....+.......--++..+|..|..++.++... ++.. ...+...|.+.+.+.|.++|..|.-
T Consensus 455 G~EgP~a~---~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~-~~~l-----~~sI~vllkRc~~D~DdevRdrAtf 525 (865)
T KOG1078|consen 455 GKEGPKAP---NPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQ-DVVL-----LPSILVLLKRCLNDSDDEVRDRATF 525 (865)
T ss_pred hccCCCCC---CcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcC-CCCc-----cccHHHHHHHHhcCchHHHHHHHHH
Confidence 54222100 1112333344444445778888888888888732 2221 1224556777778888888888877
Q ss_pred HHHHHH
Q 037562 601 GLENIL 606 (670)
Q Consensus 601 ~l~~l~ 606 (670)
++..+-
T Consensus 526 ~l~~l~ 531 (865)
T KOG1078|consen 526 YLKNLE 531 (865)
T ss_pred HHHHhh
Confidence 777655
No 150
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.0094 Score=62.96 Aligned_cols=284 Identities=11% Similarity=0.135 Sum_probs=172.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHH
Q 037562 241 PAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVV 320 (670)
Q Consensus 241 ~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 320 (670)
+.+=..+.+....+..+|++++..+.... .+.+.. .+..+--+++++. +-+|..|.++|..+|...|....
T Consensus 248 ~fl~s~l~~K~emV~~EaArai~~l~~~~----~r~l~p--avs~Lq~flssp~-~~lRfaAvRtLnkvAm~~P~~v~-- 318 (865)
T KOG1078|consen 248 PFLESCLRHKSEMVIYEAARAIVSLPNTN----SRELAP--AVSVLQLFLSSPK-VALRFAAVRTLNKVAMKHPQAVT-- 318 (865)
T ss_pred HHHHHHHhchhHHHHHHHHHHHhhccccC----Hhhcch--HHHHHHHHhcCcH-HHHHHHHHHHHHHHHHhCCcccc--
Confidence 33444556778889999999998875432 122211 5667777888888 89999999999999985544221
Q ss_pred HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCC
Q 037562 321 IDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQ 400 (670)
Q Consensus 321 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 400 (670)
..=.-+-.++.+.+..+...|+.+|..- +.....+.+ +..+...+ .+-+.+.+..+..++..+|...|.
T Consensus 319 ---~cN~elE~lItd~NrsIat~AITtLLKT--G~e~sv~rL-----m~qI~~fv-~disDeFKivvvdai~sLc~~fp~ 387 (865)
T KOG1078|consen 319 ---VCNLDLESLITDSNRSIATLAITTLLKT--GTESSVDRL-----MKQISSFV-SDISDEFKIVVVDAIRSLCLKFPR 387 (865)
T ss_pred ---ccchhHHhhhcccccchhHHHHHHHHHh--cchhHHHHH-----HHHHHHHH-HhccccceEEeHHHHHHHHhhccH
Confidence 1223455566677777766666665543 333333332 22222333 222223333334444444443322
Q ss_pred CChhhhhhhHHHHHHhhcc-CChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 037562 401 PPFNQVRPALPVLAQLIRS-NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVK 479 (670)
Q Consensus 401 ~~~~~~~~~i~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 479 (670)
. ..+.++.|..+|.. +.-+...+...++..+....++... .++..|..++.+. +...-+.+++.-+..
T Consensus 388 k----~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDc--e~~~i~~rILhlLG~ 456 (865)
T KOG1078|consen 388 K----HTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDC--EFTQIAVRILHLLGK 456 (865)
T ss_pred H----HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhc--cchHHHHHHHHHHhc
Confidence 1 24455666666664 3466777777888777765444333 3345555555443 345556666666655
Q ss_pred CCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHH
Q 037562 480 GDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAI 559 (670)
Q Consensus 480 ~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL 559 (670)
..+.. ......+..+.....-. +..+|..|..++.++..+++. ....+...|.+++.+.|.++|..|..++
T Consensus 457 EgP~a---~~Pskyir~iyNRviLE-n~ivRaaAv~alaKfg~~~~~-----l~~sI~vllkRc~~D~DdevRdrAtf~l 527 (865)
T KOG1078|consen 457 EGPKA---PNPSKYIRFIYNRVILE-NAIVRAAAVSALAKFGAQDVV-----LLPSILVLLKRCLNDSDDEVRDRATFYL 527 (865)
T ss_pred cCCCC---CCcchhhHHHhhhhhhh-hhhhHHHHHHHHHHHhcCCCC-----ccccHHHHHHHHhcCchHHHHHHHHHHH
Confidence 43321 11234555666665556 778999999999999865443 2334566778888899999999999999
Q ss_pred HHhcC
Q 037562 560 SNATK 564 (670)
Q Consensus 560 ~~l~~ 564 (670)
.++..
T Consensus 528 ~~l~~ 532 (865)
T KOG1078|consen 528 KNLEE 532 (865)
T ss_pred HHhhh
Confidence 98874
No 151
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.50 E-value=0.16 Score=55.07 Aligned_cols=168 Identities=16% Similarity=0.174 Sum_probs=126.2
Q ss_pred hcCCChHHHHHHHHH-HHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCC
Q 037562 247 VWSDDNSLQLEATTL-FINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGA 325 (670)
Q Consensus 247 l~~~~~~~~~~a~~~-L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~ 325 (670)
+.+.+...+..|++. +.+|..++ + . ....+.+++.+.+.+ .+++...-..+.+++...|+..-. +
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~--d-m-----ssLf~dViK~~~trd-~ElKrL~ylYl~~yak~~P~~~lL-----a 93 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGE--D-M-----SSLFPDVIKNVATRD-VELKRLLYLYLERYAKLKPELALL-----A 93 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCC--C-h-----HHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhccCHHHHHH-----H
Confidence 556667778888775 55666653 2 1 124677788888777 899999999999999877743322 4
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhh
Q 037562 326 VPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQ 405 (670)
Q Consensus 326 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 405 (670)
++.+.+=++++++.+|..|+++++.+= .++.-. .+++++.+++ .++++.||+.|+.++.++-+.++ ....
T Consensus 94 vNti~kDl~d~N~~iR~~AlR~ls~l~--~~el~~-----~~~~~ik~~l-~d~~ayVRk~Aalav~kly~ld~--~l~~ 163 (757)
T COG5096 94 VNTIQKDLQDPNEEIRGFALRTLSLLR--VKELLG-----NIIDPIKKLL-TDPHAYVRKTAALAVAKLYRLDK--DLYH 163 (757)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHhcC--hHHHHH-----HHHHHHHHHc-cCCcHHHHHHHHHHHHHHHhcCH--hhhh
Confidence 678889999999999999999999872 222211 2477888888 88899999999999999987642 2233
Q ss_pred hhhhHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 037562 406 VRPALPVLAQLIRSNDEEVLTDACWALSYLSDG 438 (670)
Q Consensus 406 ~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~ 438 (670)
..|.+..+..++.+.|+.+..+|+.++..+-..
T Consensus 164 ~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 164 ELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred cccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 356777788888899999999999999988643
No 152
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.41 E-value=0.00031 Score=49.12 Aligned_cols=55 Identities=35% Similarity=0.623 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 037562 296 PQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNV 351 (670)
Q Consensus 296 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 351 (670)
+.+|..|+++|++++...++...... ..+++.|+.+|.++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 47899999999999876666665544 47899999999999999999999999986
No 153
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.39 E-value=0.22 Score=57.09 Aligned_cols=143 Identities=12% Similarity=0.074 Sum_probs=96.6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 037562 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKV 319 (670)
Q Consensus 240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 319 (670)
+..++..+..+...++..|+++|..++..+..-.....++.| +..-+.+.. ..||++|+..++......++....
T Consensus 818 Lk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~----Vh~R~~Dss-asVREAaldLvGrfvl~~~e~~~q 892 (1692)
T KOG1020|consen 818 LKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEA----VHGRLNDSS-ASVREAALDLVGRFVLSIPELIFQ 892 (1692)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHH----HHHhhccch-hHHHHHHHHHHhhhhhccHHHHHH
Confidence 566677777778899999999999998764221122222332 233344555 799999999999887766666555
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc--cCChhHHHHHHHHHHhhhcC
Q 037562 320 VIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE--NANLSMLRTATWTLFNFCRG 397 (670)
Q Consensus 320 i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~--~~~~~~~~~a~~~L~~l~~~ 397 (670)
+. ..+..-+.+....||..++..+..+|...|.+-.. .....+++.. +....++.-+..++.++-..
T Consensus 893 yY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i------~~~cakmlrRv~DEEg~I~kLv~etf~klWF~ 961 (1692)
T KOG1020|consen 893 YY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKI------VDMCAKMLRRVNDEEGNIKKLVRETFLKLWFT 961 (1692)
T ss_pred HH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhH------HHHHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence 44 35666667788999999999999999887765332 2333344433 23334777888888877655
Q ss_pred C
Q 037562 398 K 398 (670)
Q Consensus 398 ~ 398 (670)
+
T Consensus 962 p 962 (1692)
T KOG1020|consen 962 P 962 (1692)
T ss_pred C
Confidence 5
No 154
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.38 E-value=7.4e-06 Score=79.44 Aligned_cols=90 Identities=17% Similarity=0.267 Sum_probs=66.1
Q ss_pred cccEEEeccCcCccccccc-ccccCCCCcEEEEecCCCCccccC--CCccccccceeeecccccccccccchhhhccccc
Q 037562 23 EVKISEAYNCYRLENILIE-ESSVMNNLVILCVHCCDHLINLVP--SSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRL 99 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~-~~~~~~~L~~L~i~~c~~l~~~~~--~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L 99 (670)
.|+.|.+++|....+-+.. ....+|++++|.+.+|.+++.... -...+++|++|.+..|..+++.........+|+|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 7899999999876654321 236789999999999987754321 1234688999999999988876433345678999
Q ss_pred ceeccccccccce
Q 037562 100 RYMEIESCDKITE 112 (670)
Q Consensus 100 ~~L~i~~c~~l~~ 112 (670)
++|.++.|+.+..
T Consensus 219 ~~lNlSwc~qi~~ 231 (483)
T KOG4341|consen 219 KYLNLSWCPQISG 231 (483)
T ss_pred HHhhhccCchhhc
Confidence 9999999987754
No 155
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.38 E-value=0.001 Score=52.29 Aligned_cols=68 Identities=13% Similarity=0.304 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhc
Q 037562 298 LQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLL--ASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQ 365 (670)
Q Consensus 298 v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL--~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 365 (670)
.+...++++++++..++...+.+.+.|+++.++... ...+|-+++.|++++.|++.++++.++.+.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 356788999999999999999999999999999964 45889999999999999999999988877653
No 156
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.34 E-value=8.4e-05 Score=83.14 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=57.4
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM 102 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L 102 (670)
.|+.|++++|.++..+|.. .+.+-+|+.|++++.. +..+|.+.+.|..|.+|++.....+... +.....+++|++|
T Consensus 572 ~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L 647 (889)
T KOG4658|consen 572 LLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESI--PGILLELQSLRVL 647 (889)
T ss_pred ceEEEECCCCCccCcCChH-HhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccc--cchhhhcccccEE
Confidence 8888999988888888875 4678888888887764 6677877777778888888777666554 2333346666666
Q ss_pred ccc
Q 037562 103 EIE 105 (670)
Q Consensus 103 ~i~ 105 (670)
.+.
T Consensus 648 ~l~ 650 (889)
T KOG4658|consen 648 RLP 650 (889)
T ss_pred Eee
Confidence 554
No 157
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.094 Score=57.34 Aligned_cols=341 Identities=13% Similarity=0.126 Sum_probs=184.9
Q ss_pred hHHHHHHHHHHHHHhcCC-CCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHH
Q 037562 252 NSLQLEATTLFINLLSFD-RSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFV 330 (670)
Q Consensus 252 ~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~ 330 (670)
+--..-|++.++.+++.- .....+...+.=+++.+...++++- -..|..|||+++.++..+-.... .-..++....
T Consensus 432 ~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~~~~~df~d~~--~l~~ale~t~ 508 (1010)
T KOG1991|consen 432 PRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQFSSIDFKDPN--NLSEALELTH 508 (1010)
T ss_pred hhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHHHHhccCCChH--HHHHHHHHHH
Confidence 344456666666655321 1333344445546667777788888 69999999999999952322222 2223456666
Q ss_pred HhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhc--CChHHHHHHhcccCChhHHHHHHHH-HHhhhcCCCCCChhhh
Q 037562 331 KLLA-SPSVDVRKQTVWALGNVAGDSPRCRDLVLSQ--GALIPLLAELNENANLSMLRTATWT-LFNFCRGKPQPPFNQV 406 (670)
Q Consensus 331 ~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~--~~i~~Ll~~l~~~~~~~~~~~a~~~-L~~l~~~~~~~~~~~~ 406 (670)
+.|. +.+-.|+-.|+-+|..+..+.+.....+... +.+..++.+. +..+.+.....+.. +..++..-..-.....
T Consensus 509 ~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~-ne~End~Lt~vme~iV~~fseElsPfA~eL~ 587 (1010)
T KOG1991|consen 509 NCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLS-NEVENDDLTNVMEKIVCKFSEELSPFAVELC 587 (1010)
T ss_pred HHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHHhhchhHHHHH
Confidence 6666 7888899999999999887766543433321 1344455555 33333333333332 3334433222233334
Q ss_pred hhhHHHHHHhhcc---C---ChhHHHHHHHHHHHhc------cCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHH
Q 037562 407 RPALPVLAQLIRS---N---DEEVLTDACWALSYLS------DGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTI 474 (670)
Q Consensus 407 ~~~i~~L~~lL~~---~---~~~v~~~al~~L~~l~------~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L 474 (670)
........++++. . +.+-...|.++|..+. ...+...+ -++.-+++.+-..+++.-.++-+.++..+
T Consensus 588 q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~~l~vi~~iL~~~i~dfyeE~~ei~ 666 (1010)
T KOG1991|consen 588 QNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPIVLPVIGFILKNDITDFYEELLEIV 666 (1010)
T ss_pred HHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5566666677763 1 2233344444444433 11121111 22234556666667776667888888888
Q ss_pred HHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc-CCHHHHHHHHhcC-----ChHHHHHHhhcC-
Q 037562 475 RNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC-GNREQIQAVIDSG-----LIGPIVNLLQNT- 547 (670)
Q Consensus 475 ~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~-----~i~~L~~ll~~~- 547 (670)
..++...++....+. ++++.+.+.+... ....-....-++.|+.. +.+. +.+.+ ++.....++.++
T Consensus 667 ~~~t~~~~~Isp~mW--~ll~li~e~~~~~-~~dyf~d~~~~l~N~vt~g~~~----~~s~~~y~~il~~i~~~~l~~e~ 739 (1010)
T KOG1991|consen 667 SSLTFLSKEISPIMW--GLLELILEVFQDD-GIDYFTDMMPALHNYVTYGTPS----LLSNPDYLQILLEIIKKVLTSEN 739 (1010)
T ss_pred hhhhhhhcccCHHHH--HHHHHHHHHHhhh-hHHHHHHHHHHHhhheeeCchh----hhccchHHHHHHHHHHHHHcCCC
Confidence 887765544433333 4677788888877 67777788888888765 3222 12111 222333344442
Q ss_pred -ChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhc----c--CCChHHHHHHHHHHHHHHHhhh
Q 037562 548 -EFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLL----L--CADPKIVTVCLEGLENILKVGV 610 (670)
Q Consensus 548 -~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll----~--~~~~~v~~~a~~~l~~l~~~~~ 610 (670)
...=...|+..+..+...+.. .... .++.++++. . .++...+.-++..+.+-+.+.+
T Consensus 740 ~~D~d~~~a~kLle~iiL~~kg-~~dq-----~iplf~~~a~~~l~~~~e~s~~~~~~leVvinalyynP 803 (1010)
T KOG1991|consen 740 GEDSDCESACKLLEVIILNCKG-LLDQ-----YIPLFLELALSRLTREVETSELRVMLLEVVINALYYNP 803 (1010)
T ss_pred CchHHHHHHHHHHHHHHHHhcC-cHhh-----HhHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCc
Confidence 233344566666666543211 1111 344444332 2 3455666666666666555443
No 158
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=97.25 E-value=0.00077 Score=73.98 Aligned_cols=50 Identities=16% Similarity=0.046 Sum_probs=25.8
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeeccc
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHC 81 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c 81 (670)
+|+.|.+.+. +++.+|. .+++|++|+++++ +++.+|. .+++|+.|.+.++
T Consensus 223 ~L~~L~L~~N-~Lt~LP~----lp~~Lk~LdLs~N-~LtsLP~---lp~sL~~L~Ls~N 272 (788)
T PRK15387 223 HITTLVIPDN-NLTSLPA----LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSN 272 (788)
T ss_pred CCCEEEccCC-cCCCCCC----CCCCCcEEEecCC-ccCcccC---cccccceeeccCC
Confidence 4555555542 4554442 2456666666554 4555543 1345556655554
No 159
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.22 E-value=3e-05 Score=65.72 Aligned_cols=140 Identities=16% Similarity=0.172 Sum_probs=90.6
Q ss_pred cCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccce
Q 037562 33 YRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITE 112 (670)
Q Consensus 33 ~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~ 112 (670)
.+++.++.. ...+.+|+.|++++- .++.+|.+..++|+|++|.+. ..+|..+ +..++++|.|+.|++.+-. +.+
T Consensus 43 NKl~~vppn-ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvg-mnrl~~l--prgfgs~p~levldltynn-l~e 116 (264)
T KOG0617|consen 43 NKLTVVPPN-IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVG-MNRLNIL--PRGFGSFPALEVLDLTYNN-LNE 116 (264)
T ss_pred CceeecCCc-HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecc-hhhhhcC--ccccCCCchhhhhhccccc-ccc
Confidence 345555544 356778888888664 577888888888999888875 4455544 3557788999998886532 211
Q ss_pred eccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCccceeeee
Q 037562 113 IVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSR 188 (670)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~ 188 (670)
- .-+.....+..|+.|++.+ ..++.++. ....+++|+.|.+++- .|-++|..+..++.|++|+|.+
T Consensus 117 ~------~lpgnff~m~tlralyl~d-ndfe~lp~--dvg~lt~lqil~lrdn-dll~lpkeig~lt~lrelhiqg 182 (264)
T KOG0617|consen 117 N------SLPGNFFYMTTLRALYLGD-NDFEILPP--DVGKLTNLQILSLRDN-DLLSLPKEIGDLTRLRELHIQG 182 (264)
T ss_pred c------cCCcchhHHHHHHHHHhcC-CCcccCCh--hhhhhcceeEEeeccC-chhhCcHHHHHHHHHHHHhccc
Confidence 1 0011122345566666654 23444444 3556788888888874 4567898888888899888743
No 160
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.21 E-value=0.00094 Score=43.28 Aligned_cols=39 Identities=38% Similarity=0.722 Sum_probs=35.9
Q ss_pred hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 037562 314 SENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVA 352 (670)
Q Consensus 314 ~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 352 (670)
++.+..+++.|+++.|++++.+++++++..|+++|.|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 347788899999999999999999999999999999996
No 161
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.21 E-value=0.13 Score=53.51 Aligned_cols=301 Identities=14% Similarity=0.095 Sum_probs=168.4
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCc----HHHHHHcCCHHHHHHhhcCC----C--CHHHHHHHHHHHHHHcCCChhhH-HH
Q 037562 251 DNSLQLEATTLFINLLSFDRSPP----IDEVIQSGVVPRFVEFLMRQ----D--YPQLQFKAAWALTNIASGTSENT-KV 319 (670)
Q Consensus 251 ~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~~g~l~~L~~ll~~~----~--~~~v~~~a~~~L~~l~~~~~~~~-~~ 319 (670)
+.+.....+..+..+........ .....+..+++.+.++.... . ++.+-..+..++..+...-+... +.
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~ 135 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQE 135 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666677777777755432222 22333444777777765322 1 14566666677666665333333 33
Q ss_pred HHhCCChHHHHH-----hhC-CC------CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHH
Q 037562 320 VIDHGAVPIFVK-----LLA-SP------SVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTA 387 (670)
Q Consensus 320 i~~~~~i~~L~~-----lL~-~~------~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a 387 (670)
+++ .+...+.. -+. .. ......-...+++.+- ++..-. .....+..++.......++..+..+
T Consensus 136 ~~~-~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~---~~~~~~-~~~~ll~~l~~~~~~~~~~~~~~~~ 210 (415)
T PF12460_consen 136 ILD-ELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLR---KDVSLP-DLEELLQSLLNLALSSEDEFSRLAA 210 (415)
T ss_pred HHH-HHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCC---cccCcc-CHHHHHHHHHHHHHcCCChHHHHHH
Confidence 321 22222220 000 01 1111112223333332 221100 0111466777777677777888888
Q ss_pred HHHHHhhhcCCCCCChhhhhhhHHHHHHhh-ccCChhHHHH----HHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCC
Q 037562 388 TWTLFNFCRGKPQPPFNQVRPALPVLAQLI-RSNDEEVLTD----ACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHS 462 (670)
Q Consensus 388 ~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~----al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~ 462 (670)
+.+++.+...-+... .....+..+...+ ...+...+.. ..|+...+......... .++..++.++.+
T Consensus 211 ~~~la~LvNK~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~- 282 (415)
T PF12460_consen 211 LQLLASLVNKWPDDD--DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSS- 282 (415)
T ss_pred HHHHHHHHcCCCChh--hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCC-
Confidence 888888886632222 3344555555444 2233333333 34444444322222222 345667788877
Q ss_pred CccchhHHHHHHHHhhcCCch--------hhHHHHhCC----ChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHH
Q 037562 463 SSSVLTPALRTIRNIVKGDDF--------QTQCIINCG----ALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQA 530 (670)
Q Consensus 463 ~~~v~~~a~~~L~~l~~~~~~--------~~~~l~~~~----~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 530 (670)
+++...|+..++-+....+. .++.+.+.. .+|.+++..+.. +.+.+..-..+++++..+-|...-.
T Consensus 283 -~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-~~~~k~~yL~ALs~ll~~vP~~vl~ 360 (415)
T PF12460_consen 283 -PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-DDEIKSNYLTALSHLLKNVPKSVLL 360 (415)
T ss_pred -hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-ChhhHHHHHHHHHHHHhhCCHHHHH
Confidence 56788888988888875222 223333333 466666667766 6668888889999998876654432
Q ss_pred HHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCC
Q 037562 531 VIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFG 566 (670)
Q Consensus 531 l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 566 (670)
---..++|.+++.+..++.+++..+..+|..+....
T Consensus 361 ~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 361 PELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 222458999999999999999999999999998863
No 162
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.21 E-value=0.00042 Score=49.71 Aligned_cols=57 Identities=25% Similarity=0.363 Sum_probs=25.0
Q ss_pred CCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhcccccceeccccc
Q 037562 48 NLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESC 107 (670)
Q Consensus 48 ~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 107 (670)
+|++|++++| ++..+++. +..+++|++|+|+++ +++.+ ++..+..+++|++|+++++
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i-~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSI-PPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEE-ETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCcc-CHHHHcCCCCCCEEeCcCC
Confidence 4445555544 34444432 233455555555522 33333 1223344555555555444
No 163
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.20 E-value=0.012 Score=62.63 Aligned_cols=240 Identities=13% Similarity=0.049 Sum_probs=157.5
Q ss_pred chhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHh-hhcCCCCCChhhhhhhHHHHHHhhccCC-hhHHHHHHHHHH
Q 037562 356 PRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFN-FCRGKPQPPFNQVRPALPVLAQLIRSND-EEVLTDACWALS 433 (670)
Q Consensus 356 ~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~~~i~~L~~lL~~~~-~~v~~~al~~L~ 433 (670)
..-+...++.|+...|+++. ....+..+..+..+|.. +... .......++.+...++... ..-...++.++.
T Consensus 494 K~~~~~~Ik~~~~~aLlrl~-~~q~e~akl~~~~aL~~~i~f~-----~~~~~~v~~~~~s~~~~d~~~~en~E~L~alt 567 (748)
T KOG4151|consen 494 KYERAKKIKPGGYEALLRLG-QQQFEEAKLKWYHALAGKIDFP-----GERSYEVVKPLDSALHNDEKGLENFEALEALT 567 (748)
T ss_pred HHhcCccccccHHHHHHHHH-HHhchHHHHHHHHHHhhhcCCC-----CCchhhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence 34455667888999999998 44445666677777772 1111 1112334444444444332 222345788899
Q ss_pred HhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHh-CCChHHHHHhhccCCchhHHHH
Q 037562 434 YLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIIN-CGALPYFLDMLVHNHEESIKKE 512 (670)
Q Consensus 434 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~~~~L~~~l~~~~~~~v~~~ 512 (670)
|++..++...+.+.....++.+-.++..+++-.+..++..+.||..+..-....+++ ....+.....+... +.....+
T Consensus 568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA 646 (748)
T KOG4151|consen 568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELA 646 (748)
T ss_pred cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhh
Confidence 999877766777888777788888888889999999999999999877666666666 34555555566555 7777777
Q ss_pred HHHHHHHhhcCCHHHHH-HHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCC
Q 037562 513 VSWIISNITCGNREQIQ-AVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCAD 591 (670)
Q Consensus 513 a~~~L~~l~~~~~~~~~-~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 591 (670)
++.++..++........ ..--......++.++.+++++++......+.++... ..+....+.....++.+...-....
T Consensus 647 ~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~-~~ei~~~~~~~~~~~~l~~~~~~~~ 725 (748)
T KOG4151|consen 647 GAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEA-LFEIAEKIFETEVMELLSGLQKLNR 725 (748)
T ss_pred ccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHH-HHHHHHHhccchHHHHHHHHHHhhh
Confidence 77777767664444443 222345678888999999999999999999995543 5566666666555555555544433
Q ss_pred hHHHHHHHHHHH
Q 037562 592 PKIVTVCLEGLE 603 (670)
Q Consensus 592 ~~v~~~a~~~l~ 603 (670)
...+..+..+|.
T Consensus 726 a~~~~~~~~~l~ 737 (748)
T KOG4151|consen 726 APKREDAAPCLS 737 (748)
T ss_pred hhhhhhhhhHHH
Confidence 334444444443
No 164
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.19 E-value=0.13 Score=50.94 Aligned_cols=200 Identities=11% Similarity=0.085 Sum_probs=142.5
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHH-----HHHHHHc--CCHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 037562 407 RPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDK-----VQAVIEA--GVYPRLVELLGHSSSSVLTPALRTIRNIVK 479 (670)
Q Consensus 407 ~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~-----~~~~~~~--~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 479 (670)
.+.+..|+..|..-+-+.+..+..++.++.....+. ...+... .++..++..- +++++...+-..|..++.
T Consensus 75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k 152 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIK 152 (335)
T ss_dssp HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTT
T ss_pred hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHh
Confidence 567888888888889999999999999988553222 2222221 2333444333 355677777777777776
Q ss_pred CCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcC---ChHHHHHHhhcCChhHHHHHH
Q 037562 480 GDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSG---LIGPIVNLLQNTEFDTKKEAA 556 (670)
Q Consensus 480 ~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~---~i~~L~~ll~~~~~~v~~~a~ 556 (670)
. +...+.+.....+..+.+.++.+ +.++...|..++..+....+.....++..+ ++.....++.+++.-+++.++
T Consensus 153 ~-e~l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl 230 (335)
T PF08569_consen 153 H-ESLAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL 230 (335)
T ss_dssp S-HHHHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred h-HHHHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence 4 45566777888888899999999 999999999999998776677666666544 467777888899999999999
Q ss_pred HHHHHhcCCCCH--HHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhh
Q 037562 557 WAISNATKFGTH--EQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGV 610 (670)
Q Consensus 557 ~aL~~l~~~~~~--~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~ 610 (670)
..|+.+...-.. -..+++.+..-+..++.++++++..++..|..++.-++..+.
T Consensus 231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~ 286 (335)
T PF08569_consen 231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPN 286 (335)
T ss_dssp HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCC
Confidence 999999873211 123444455568889999999999999999999987776543
No 165
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.16 E-value=0.044 Score=57.46 Aligned_cols=129 Identities=15% Similarity=0.137 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCC
Q 037562 383 MLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHS 462 (670)
Q Consensus 383 ~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~ 462 (670)
+.+.++.++..+-..++ ....+.+.+-.+++...+++..||..++..++.+.......-..+++ ++...+..-+.+.
T Consensus 62 Il~fla~fv~sl~q~d~--e~DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn-~l~e~l~~Rl~Dr 138 (892)
T KOG2025|consen 62 ILSFLARFVESLPQLDK--EEDLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFN-KLNEKLLIRLKDR 138 (892)
T ss_pred HHHHHHHHHHhhhccCc--hhhHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHH-HHHHHHHHHHhcc
Confidence 33444444444443322 22355777778888888899999999999999998743333333333 7778888888899
Q ss_pred CccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHH
Q 037562 463 SSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISN 519 (670)
Q Consensus 463 ~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~ 519 (670)
.+.||.+|+.+|+.+-....+. +..+...+..+++++++++||+.|...+.+
T Consensus 139 ep~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnDpS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 139 EPNVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQNDPSDEVRRAALSNISV 190 (892)
T ss_pred CchHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence 9999999999999986422111 124677888999988899999987655543
No 166
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=97.15 E-value=0.12 Score=55.97 Aligned_cols=229 Identities=15% Similarity=0.140 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHH
Q 037562 296 PQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLL-ASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAE 374 (670)
Q Consensus 296 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~ 374 (670)
|..-..|.+++...+.........+- -++...+..+ .+..+.++..|+++++..++... +... ..+++..++++
T Consensus 464 P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~v-l~~~--~p~ild~L~ql 538 (1005)
T KOG2274|consen 464 PFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCKVKV-LLSL--QPMILDGLLQL 538 (1005)
T ss_pred HHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccCcee-cccc--chHHHHHHHHH
Confidence 67777888888877763322222211 1233334433 34667788888888888873221 1111 12345566666
Q ss_pred hcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhc--cCChhHHHHHHHHHHHhccCChHHHHHHHHcCCH
Q 037562 375 LNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIR--SNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVY 452 (670)
Q Consensus 375 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i 452 (670)
. ...+.++......+|+..+..+|.......+.+.|.+..++. ++|+.+...+-.++-.++.... ... -.....+
T Consensus 539 a-s~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~-~~g-~m~e~~i 615 (1005)
T KOG2274|consen 539 A-SKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAA-NYG-PMQERLI 615 (1005)
T ss_pred c-ccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH-hhc-chHHHHH
Confidence 6 556678888899999999999877777777778888776654 5678887777777777765321 122 2233688
Q ss_pred HHHHHhcCCCC----ccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHH
Q 037562 453 PRLVELLGHSS----SSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQI 528 (670)
Q Consensus 453 ~~L~~lL~~~~----~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~ 528 (670)
|.++..|+.+. ......|+.+|..+.++.+......+-.-++|++.+..-+..+.+....+..+++.+...+.++.
T Consensus 616 Pslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~ 695 (1005)
T KOG2274|consen 616 PSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISVTLEQL 695 (1005)
T ss_pred HHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHH
Confidence 99999998876 45667788888888877665444444445788888887665588899999999999987655554
Q ss_pred HHHH
Q 037562 529 QAVI 532 (670)
Q Consensus 529 ~~l~ 532 (670)
..--
T Consensus 696 ~t~~ 699 (1005)
T KOG2274|consen 696 LTWH 699 (1005)
T ss_pred Hhhc
Confidence 4333
No 167
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.22 Score=50.32 Aligned_cols=257 Identities=11% Similarity=0.050 Sum_probs=142.9
Q ss_pred ccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhcc-CChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHH
Q 037562 377 ENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRS-NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRL 455 (670)
Q Consensus 377 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L 455 (670)
.+++..++..|+..|.|.+...|..........+..++.-|-+ .+.+|+-.++.+|..+........-.-+--.+.-.+
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrl 347 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRL 347 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHH
Confidence 4456678889999999999987666666666677777666654 468899999988887764322111101111344456
Q ss_pred HHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHh---CCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHH
Q 037562 456 VELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIIN---CGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVI 532 (670)
Q Consensus 456 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~---~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~ 532 (670)
..+..+.+++.|..|...++.++.......+.++. .+....++-.+++. ++.+- .||......+..+ -.++.+
T Consensus 348 R~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~-~p~va-~ACr~~~~~c~p~-l~rke~- 423 (533)
T KOG2032|consen 348 RTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDP-NPYVA-RACRSELRTCYPN-LVRKEL- 423 (533)
T ss_pred HHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCC-ChHHH-HHHHHHHHhcCch-hHHHHH-
Confidence 67778899999999999999887644333332221 12334445555666 55544 4566665554421 111111
Q ss_pred hcCChHHHHHHhhcCCh-hHHH-HHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhh
Q 037562 533 DSGLIGPIVNLLQNTEF-DTKK-EAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGV 610 (670)
Q Consensus 533 ~~~~i~~L~~ll~~~~~-~v~~-~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~ 610 (670)
.++++... +.+. ..+. ..-| ...+... .++...++..+ ..-++++.-+.++..+...-.+....-.
T Consensus 424 -~~~~q~~l----d~~~~~~q~Fyn~~-c~~L~~i-~~d~l~~~~t~-----~~~~f~sswe~vr~aavl~t~~~vd~l~ 491 (533)
T KOG2032|consen 424 -YHLFQESL----DTDMARFQAFYNQW-CIQLNHI-HPDILMLLLTE-----DQHIFSSSWEQVREAAVLKTTRSVDSLV 491 (533)
T ss_pred -HHHHhhhh----HHhHHHHHHHHHHH-HHHHhhh-CHHHHHHHHHh-----chhheecchHHHHHHHHHHHHHHHHHhH
Confidence 11222222 1111 1111 1111 1112221 33433332222 2224455555666666555555443322
Q ss_pred hhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562 611 AEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYW 661 (670)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~ 661 (670)
. .++...........+..|...+-+++++.|.++++...
T Consensus 492 ~------------~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~ 530 (533)
T KOG2032|consen 492 R------------AACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS 530 (533)
T ss_pred H------------HHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence 2 12344445555777889999999999999999988653
No 168
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.13 E-value=0.47 Score=53.22 Aligned_cols=134 Identities=10% Similarity=0.150 Sum_probs=99.3
Q ss_pred hHHHHHhhccC---CchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh-cCChhHHHHHHHHHHHhcCCCCHH
Q 037562 494 LPYFLDMLVHN---HEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ-NTEFDTKKEAAWAISNATKFGTHE 569 (670)
Q Consensus 494 ~~~L~~~l~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~ 569 (670)
.|.++...++. .+|+++..|.-+++.+..-+..... .-+|.|+.++. ++++.+|.+++-+++.++... |.
T Consensus 921 ~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~f-pn 994 (1251)
T KOG0414|consen 921 APIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRF-PN 994 (1251)
T ss_pred HHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhc-cc
Confidence 44455555322 1788999999999998764444221 24688899888 889999999999999998852 22
Q ss_pred HHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHH
Q 037562 570 QIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGI 649 (670)
Q Consensus 570 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v 649 (670)
.... .-+.|.+-+.++++.||+.|+-.+..++- ..++.--|-+.....+..++++++
T Consensus 995 lie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLIL------------------ndmiKVKGql~eMA~cl~D~~~~I 1051 (1251)
T KOG0414|consen 995 LIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLIL------------------NDMIKVKGQLSEMALCLEDPNAEI 1051 (1251)
T ss_pred ccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHH------------------hhhhHhcccHHHHHHHhcCCcHHH
Confidence 2222 45678888899999999999999999884 345556666777777888899999
Q ss_pred HHHHHHH
Q 037562 650 SEKAVEI 656 (670)
Q Consensus 650 ~~~a~~~ 656 (670)
+..|...
T Consensus 1052 sdlAk~F 1058 (1251)
T KOG0414|consen 1052 SDLAKSF 1058 (1251)
T ss_pred HHHHHHH
Confidence 9888843
No 169
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=0.064 Score=59.76 Aligned_cols=241 Identities=12% Similarity=0.122 Sum_probs=150.8
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC---CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hhHHHH
Q 037562 287 VEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDH---GAVPIFVKLLASPSVDVRKQTVWALGNVAGDSP-RCRDLV 362 (670)
Q Consensus 287 ~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~---~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i 362 (670)
.....+.+...+|..+.++|..++.. +.. ..+... .+...+.+-+++.+...+...+.+|..+....+ +..+.+
T Consensus 659 ~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~-~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i 736 (1176)
T KOG1248|consen 659 DPEFENSSSTKVQKKAYRLLEELSSS-PSG-EGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI 736 (1176)
T ss_pred hHHhhccccHHHHHHHHHHHHHHhcC-Cch-hhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 34444443379999999999999984 222 222211 233445555556667777788888888775444 333333
Q ss_pred HhcCChHHHHHHhcccCChhHHHHHHHHHHhhhc--CC----CCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhc
Q 037562 363 LSQGALIPLLAELNENANLSMLRTATWTLFNFCR--GK----PQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLS 436 (670)
Q Consensus 363 ~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~--~~----~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~ 436 (670)
.. .++.++-.+ +..+...++++..+|..++. .. ..+....+...++.+...+-.+...+....+-++..+.
T Consensus 737 ~k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il 813 (1176)
T KOG1248|consen 737 PK--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL 813 (1176)
T ss_pred HH--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence 22 344444444 66777888899888888872 11 12224455666776666655554444444355555555
Q ss_pred cCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHH
Q 037562 437 DGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWI 516 (670)
Q Consensus 437 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~ 516 (670)
.........-.-.++++.+..+|.+++.+++..|+..+..++...++..-.-....+++.+..++++. ...+|..+-..
T Consensus 814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~L 892 (1176)
T KOG1248|consen 814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLL 892 (1176)
T ss_pred HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence 33222222222236778888889999999999999999999987765443333344788888888777 78888888888
Q ss_pred HHHhhc-CCHHHHHHHHh
Q 037562 517 ISNITC-GNREQIQAVID 533 (670)
Q Consensus 517 L~~l~~-~~~~~~~~l~~ 533 (670)
+-.++. ...+..+.+..
T Consensus 893 lekLirkfg~~eLe~~~p 910 (1176)
T KOG1248|consen 893 LEKLIRKFGAEELESFLP 910 (1176)
T ss_pred HHHHHHHhCHHHHHhhCH
Confidence 888776 23444444443
No 170
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=97.10 E-value=0.043 Score=57.47 Aligned_cols=294 Identities=13% Similarity=0.124 Sum_probs=147.4
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh
Q 037562 285 RFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLS 364 (670)
Q Consensus 285 ~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 364 (670)
.++...+ .+ ...+..|+..+.......|+..+.. +..++++..+++..||..|+..|..+|.++++....+
T Consensus 27 ~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-- 97 (556)
T PF05918_consen 27 EILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-- 97 (556)
T ss_dssp HHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH--
T ss_pred HHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH--
Confidence 4455444 35 6899999999999999888877654 6789999999999999999999999999887765554
Q ss_pred cCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhc---cCChhHHHHHHHHHHHhc-cCCh
Q 037562 365 QGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIR---SNDEEVLTDACWALSYLS-DGTN 440 (670)
Q Consensus 365 ~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~---~~~~~v~~~al~~L~~l~-~~~~ 440 (670)
...|.++| ...++.-...+-.+|..+...++ .+.+..+...+. ++++.+|+.++..|..-. .-..
T Consensus 98 ---aDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~ 166 (556)
T PF05918_consen 98 ---ADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKP 166 (556)
T ss_dssp ---HHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-T
T ss_pred ---HHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcH
Confidence 56788888 56666556666666666665432 334444444443 578889999988775432 1111
Q ss_pred HHHH--HHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcC----CchhhHHHHhCCChHHHHHhh------ccCCchh
Q 037562 441 DKVQ--AVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKG----DDFQTQCIINCGALPYFLDML------VHNHEES 508 (670)
Q Consensus 441 ~~~~--~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~----~~~~~~~l~~~~~~~~L~~~l------~~~~~~~ 508 (670)
+... .-.+.-++..+.+.|.+-...--.....+|..+-.. .....+. +++.+.+.. ... +++
T Consensus 167 ~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qe-----Lv~ii~eQa~Ld~~f~~s-D~e 240 (556)
T PF05918_consen 167 ELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQE-----LVDIIEEQADLDQPFDPS-DPE 240 (556)
T ss_dssp TTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHH-----HHHHHHHHHTTTS---SS-SHH
T ss_pred HHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHH-----HHHHHHHHhccCCCCCCc-CHH
Confidence 1111 112223445566667653222222333444444431 1222222 233333322 112 344
Q ss_pred HHHHHHHHHHH----hhc--CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHH
Q 037562 509 IKKEVSWIISN----ITC--GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKP 582 (670)
Q Consensus 509 v~~~a~~~L~~----l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~ 582 (670)
.......++.. +.. .+.....++.+ .++|.+-++ ..+.+...+.+++.++..........+++ -++..
T Consensus 241 ~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L~-~i~~~ 314 (556)
T PF05918_consen 241 SIDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLLP-SIFQL 314 (556)
T ss_dssp HHHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT----THHHHHH-HHHHH
T ss_pred HHHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHHH-HHHHH
Confidence 33333333332 122 23444444444 477766555 45777788888888887654332333221 12233
Q ss_pred HHhhc--cCCChH----HHHHHHHHHHHHHHhhh
Q 037562 583 LCDLL--LCADPK----IVTVCLEGLENILKVGV 610 (670)
Q Consensus 583 L~~ll--~~~~~~----v~~~a~~~l~~l~~~~~ 610 (670)
|..++ ....++ .++..+.++..+....+
T Consensus 315 L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p 348 (556)
T PF05918_consen 315 LKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSP 348 (556)
T ss_dssp HHTTS----------HHHHHHHHHHHHHHHTT-T
T ss_pred HHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCc
Confidence 33333 122333 44555555565554433
No 171
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.10 E-value=0.0035 Score=49.27 Aligned_cols=68 Identities=18% Similarity=0.233 Sum_probs=58.2
Q ss_pred chhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCC-chhHHHHHHHHHHHhhcCCHHHHHHHHh
Q 037562 466 VLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNH-EESIKKEVSWIISNITCGNREQIQAVID 533 (670)
Q Consensus 466 v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~ 533 (670)
++...+++|+|++..++.....+.+.|+++.+++...-+. +|-+++.|.+++.|++.+++++...+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4677889999999999999999999999999999865432 8999999999999999998887765543
No 172
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.00055 Score=67.24 Aligned_cols=142 Identities=21% Similarity=0.258 Sum_probs=84.2
Q ss_pred ccCCCCcEEEEecCCCCccccCC--Cccccccceeeeccccc-ccccccchhhhcccccceeccccccccceeccccccc
Q 037562 44 SVMNNLVILCVHCCDHLINLVPS--STSFQNLTNLVVSHCKR-LKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVV 120 (670)
Q Consensus 44 ~~~~~L~~L~i~~c~~l~~~~~~--~~~~~~L~~L~i~~c~~-l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 120 (670)
..+|+|+.|+++.-. |.....+ ...++.|+.|.+++|.- -+++ ...+..+|+|+.|++.+-..+- .
T Consensus 169 eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~~lK~L~l~~CGls~k~V--~~~~~~fPsl~~L~L~~N~~~~---~----- 237 (505)
T KOG3207|consen 169 EQLPSLENLNLSSNR-LSNFISSNTTLLLSHLKQLVLNSCGLSWKDV--QWILLTFPSLEVLYLEANEIIL---I----- 237 (505)
T ss_pred Hhcccchhccccccc-ccCCccccchhhhhhhheEEeccCCCCHHHH--HHHHHhCCcHHHhhhhcccccc---e-----
Confidence 457777777776532 2111111 23577888888888831 2222 1235578888888886653211 0
Q ss_pred cccccccccccccccccccccccccccCCcccCCCCccEEeEecCCC--ccccccC-----CcCCCCccceeeeeccCCc
Q 037562 121 AQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPN--MKIFSGG-----ELSTPNLHKVQLSRWDGEE 193 (670)
Q Consensus 121 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~--l~~~p~~-----~~~~~~L~~l~i~~~~~~~ 193 (670)
...+...+..|++|+|++-+.+ ++..+.....||.|..|.+..|.- +. +|.. ...+|+|+.|.+++.+ ..
T Consensus 238 ~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~-~~d~~s~~kt~~f~kL~~L~i~~N~-I~ 314 (505)
T KOG3207|consen 238 KATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIA-EPDVESLDKTHTFPKLEYLNISENN-IR 314 (505)
T ss_pred ecchhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhc-CCCccchhhhcccccceeeecccCc-cc
Confidence 1122345778999999885544 444444567899999999987742 33 3433 2347999999885433 33
Q ss_pred cceeec
Q 037562 194 HWIWVH 199 (670)
Q Consensus 194 ~~~~~~ 199 (670)
+|=...
T Consensus 315 ~w~sl~ 320 (505)
T KOG3207|consen 315 DWRSLN 320 (505)
T ss_pred cccccc
Confidence 354333
No 173
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.05 E-value=0.00085 Score=48.11 Aligned_cols=58 Identities=22% Similarity=0.242 Sum_probs=49.1
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCC-Cccccccceeeecccc
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCK 82 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~ 82 (670)
+|++|.+.+| +++.++......+++|++|+++++ .+..+++. +..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 6899999998 899998776788999999999955 57777764 4679999999999884
No 174
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=97.04 E-value=0.03 Score=50.43 Aligned_cols=93 Identities=20% Similarity=0.214 Sum_probs=74.9
Q ss_pred ChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHh
Q 037562 421 DEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDM 500 (670)
Q Consensus 421 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~ 500 (670)
++.+|.+++.+++-++...+.... ..++.+...|.++++.||..|+.++..|...+.-..+ ..++..++..
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~ 71 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKL 71 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHH
Confidence 578999999999999876654443 5678999999999999999999999999875432222 2344777888
Q ss_pred hccCCchhHHHHHHHHHHHhhcC
Q 037562 501 LVHNHEESIKKEVSWIISNITCG 523 (670)
Q Consensus 501 l~~~~~~~v~~~a~~~L~~l~~~ 523 (670)
+.++ +++++..|..++..+...
T Consensus 72 l~D~-~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDE-NPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCC-CHHHHHHHHHHHHHHHHh
Confidence 8888 999999999999999764
No 175
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=97.03 E-value=0.081 Score=52.38 Aligned_cols=205 Identities=11% Similarity=0.073 Sum_probs=143.6
Q ss_pred HHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchh-----hHHHHhCCChHHHHHhhccCCchhHHHHHHHHHH
Q 037562 444 QAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQ-----TQCIINCGALPYFLDMLVHNHEESIKKEVSWIIS 518 (670)
Q Consensus 444 ~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-----~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~ 518 (670)
+.++..+.+..++..|..-+.+.|..++.+.+++....... ...+.. ..-+.+..++..-.++++.-.+...+.
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~-~~peil~~L~~gy~~~dial~~g~mlR 148 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLER-HRPEILDILLRGYENPDIALNCGDMLR 148 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGSTTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHh-CCHHHHHHHHHHhcCccccchHHHHHH
Confidence 44667799999999999999999999999999998765332 223332 223333333332225566666667777
Q ss_pred HhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHc---CCcHHHHhhccCCChHHH
Q 037562 519 NITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVRE---GCVKPLCDLLLCADPKIV 595 (670)
Q Consensus 519 ~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~---~~i~~L~~ll~~~~~~v~ 595 (670)
.++.. +...+.++....+..+.+..+.++.++...|..++..+... .+.....++.. ..+.....++.+++.-++
T Consensus 149 ec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~-hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtk 226 (335)
T PF08569_consen 149 ECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR-HKKLVAEFLSNNYDRFFQKYNKLLESSNYVTK 226 (335)
T ss_dssp HHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHH
T ss_pred HHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHccCCCeEee
Confidence 76554 66777888888899999999999999999999999998776 44554444443 346678889999999999
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562 596 TVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYW 661 (670)
Q Consensus 596 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~ 661 (670)
..+++.|+.++.+..+.. .....+....-+..+-.|+.+++..++..|-.+..-+.
T Consensus 227 rqslkLL~ellldr~n~~----------vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFV 282 (335)
T PF08569_consen 227 RQSLKLLGELLLDRSNFN----------VMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFV 282 (335)
T ss_dssp HHHHHHHHHHHHSGGGHH----------HHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHchhHHH----------HHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHH
Confidence 999999999997655432 23445555556677788889999999999887766543
No 176
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=97.02 E-value=0.023 Score=48.67 Aligned_cols=132 Identities=13% Similarity=0.118 Sum_probs=102.3
Q ss_pred HHHHHHcCCHHHHHHhcCCCCc------cchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCC-chhHHHHHHH
Q 037562 443 VQAVIEAGVYPRLVELLGHSSS------SVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNH-EESIKKEVSW 515 (670)
Q Consensus 443 ~~~~~~~~~i~~L~~lL~~~~~------~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~-~~~v~~~a~~ 515 (670)
...++..+++..|+.++.++.. ++...++.++..+..+.. .........++..++..++... +..+...|..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSWDTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-CchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 3457778999999999988663 566667888888877542 2333556667888888887664 6889999999
Q ss_pred HHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHH
Q 037562 516 IISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLV 575 (670)
Q Consensus 516 ~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~ 575 (670)
.|-++...++.....+.+.=-++.|+..++..+.+++.+|...+..+...+++..++.+.
T Consensus 83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~ 142 (160)
T PF11841_consen 83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIA 142 (160)
T ss_pred HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 999998877765655555556999999999999999999999999998887666655433
No 177
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=4.6e-05 Score=70.66 Aligned_cols=136 Identities=20% Similarity=0.197 Sum_probs=77.6
Q ss_pred CCCcEEEEecCCCCccccCC--Cccccccceeeecccccccccccchhhhcccccceeccccccccceeccccccccccc
Q 037562 47 NNLVILCVHCCDHLINLVPS--STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDE 124 (670)
Q Consensus 47 ~~L~~L~i~~c~~l~~~~~~--~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 124 (670)
.+|+.|+++.|+++..-.-. ..++..|..|+|++|.--......-...--++|+.|+++||..--.. . -...-
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~---s--h~~tL 308 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQK---S--HLSTL 308 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhh---h--HHHHH
Confidence 45666666666655432211 12355566666666633222210011122355666666666422100 0 00001
Q ss_pred cccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccC---CcCCCCccceeeeecc
Q 037562 125 VITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGG---ELSTPNLHKVQLSRWD 190 (670)
Q Consensus 125 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~---~~~~~~L~~l~i~~~~ 190 (670)
....|+|..|++++|-.|+.=+.. ..+.|+.|++|.++.|-.+. |.. ..+.|+|.+|++.++-
T Consensus 309 ~~rcp~l~~LDLSD~v~l~~~~~~-~~~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 309 VRRCPNLVHLDLSDSVMLKNDCFQ-EFFKFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred HHhCCceeeeccccccccCchHHH-HHHhcchheeeehhhhcCCC--hHHeeeeccCcceEEEEecccc
Confidence 124789999999999988873332 45789999999999998754 432 3457999999886543
No 178
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.99 E-value=9.9e-05 Score=75.45 Aligned_cols=163 Identities=19% Similarity=0.209 Sum_probs=88.1
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCC-CCccccCCCccccccceeeecccccccccccchhhhcccccce
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCD-HLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY 101 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~-~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~ 101 (670)
+|++|.+++-|= ...-......+++|+.|.+++-. -+..+|.+...+.||..++++ |.+|..+ |..+-.+++|+.
T Consensus 174 ~LqtL~Ls~NPL-~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS-~N~Lp~v--Pecly~l~~Lrr 249 (1255)
T KOG0444|consen 174 MLQTLKLSNNPL-NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLS-ENNLPIV--PECLYKLRNLRR 249 (1255)
T ss_pred hhhhhhcCCChh-hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccc-ccCCCcc--hHHHhhhhhhhe
Confidence 667776665541 11001011234455555555432 334566666667777777765 5555554 244556777777
Q ss_pred eccccccccceeccc-cc--------------ccccccccccccccccccccc-ccccccccC-----------------
Q 037562 102 MEIESCDKITEIVLV-DD--------------VVAQDEVITFRELKELNLLQM-QNLISFCSG----------------- 148 (670)
Q Consensus 102 L~i~~c~~l~~~~~~-~~--------------~~~~~~~~~~~~L~~L~l~~~-~~l~~~~~~----------------- 148 (670)
|++++-. ++++-.. +. ..-+.....+|+|+.|...+- -..+.++.|
T Consensus 250 LNLS~N~-iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L 328 (1255)
T KOG0444|consen 250 LNLSGNK-ITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL 328 (1255)
T ss_pred eccCcCc-eeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence 7776532 2222100 00 001122334566666554421 122222222
Q ss_pred ----CcccCCCCccEEeEecCCCccccccCCcCCCCccceeeeeccC
Q 037562 149 ----NCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRWDG 191 (670)
Q Consensus 149 ----~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~~~~ 191 (670)
.....|+.|++|.+. |..|.++|+.+..+|.|+.|++.+.++
T Consensus 329 ElVPEglcRC~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 329 ELVPEGLCRCVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred ccCchhhhhhHHHHHhccc-ccceeechhhhhhcCCcceeeccCCcC
Confidence 013457888888875 788889999998899999999976553
No 179
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.98 E-value=0.15 Score=50.22 Aligned_cols=195 Identities=13% Similarity=0.099 Sum_probs=123.8
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHH--HcCCHHHHHHhcCCCCccchhHHHHHHHHhhcC--CchhhHH
Q 037562 412 VLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVI--EAGVYPRLVELLGHSSSSVLTPALRTIRNIVKG--DDFQTQC 487 (670)
Q Consensus 412 ~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~--~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~~ 487 (670)
..+..+.......|..++..+.++...... ...+. ...++..+.+.++.+..+-+..|+.+++-++-. .......
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~e 125 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEE 125 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHH
Confidence 344445556688999999988887744321 11111 124677788888887766677788888777654 2233444
Q ss_pred HHhCCChHHHHHhhccCC-chhHHHHHHHHHHHhhc---CCHHHHHHHHhcCChHHHHH--Hhh-c---------CChhH
Q 037562 488 IINCGALPYFLDMLVHNH-EESIKKEVSWIISNITC---GNREQIQAVIDSGLIGPIVN--LLQ-N---------TEFDT 551 (670)
Q Consensus 488 l~~~~~~~~L~~~l~~~~-~~~v~~~a~~~L~~l~~---~~~~~~~~l~~~~~i~~L~~--ll~-~---------~~~~v 551 (670)
+++ ...+.|...+.++. ...+|..++.+|+-++. ..++.....++ .+..+.. ..+ + +++.+
T Consensus 126 i~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l 202 (309)
T PF05004_consen 126 IFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAAL 202 (309)
T ss_pred HHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHH
Confidence 554 47788888888763 34566666666666543 33443332222 2221111 112 1 13468
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhh
Q 037562 552 KKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVA 611 (670)
Q Consensus 552 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~ 611 (670)
...|+.+.+-+....+........+ ..++.|..+|++.+.+||.+|-.+|.-+++....
T Consensus 203 ~~aAL~aW~lLlt~~~~~~~~~~~~-~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 203 VAAALSAWALLLTTLPDSKLEDLLE-EALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 8888888888877655544444333 3689999999999999999999999988877654
No 180
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.92 E-value=0.07 Score=52.59 Aligned_cols=191 Identities=20% Similarity=0.200 Sum_probs=121.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHH--HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC--Chh
Q 037562 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVI--QSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASG--TSE 315 (670)
Q Consensus 240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~--~~~ 315 (670)
+...+..+.......+..|+..+.++.... ...+.+. ...++..+.+.++.+. .+-+..|+++++-++-. ...
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~--~~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg~g~ 121 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSR--YLPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLGAGE 121 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcCCCc
Confidence 566777777667889999999999987652 2223222 2346778888888887 57777788888777653 223
Q ss_pred hHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhC---CCchhHHHHHhcCChHHHHHH--hcc---------cC
Q 037562 316 NTKVVIDHGAVPIFVKLLASP--SVDVRKQTVWALGNVAG---DSPRCRDLVLSQGALIPLLAE--LNE---------NA 379 (670)
Q Consensus 316 ~~~~i~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~---~~~~~~~~i~~~~~i~~Ll~~--l~~---------~~ 379 (670)
....+++ ...|.|.+.+.+. ...+|..|+.+|+-++. .++......++ .+..+... ... .+
T Consensus 122 ~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~ 198 (309)
T PF05004_consen 122 DSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAED 198 (309)
T ss_pred cHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCC
Confidence 4445554 4678888888764 45677777777777652 22221111111 22222111 111 12
Q ss_pred ChhHHHHHHHHHHhhhcCCCCC-ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhc
Q 037562 380 NLSMLRTATWTLFNFCRGKPQP-PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLS 436 (670)
Q Consensus 380 ~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~ 436 (670)
++.+...|+.+.+-|...-+.. ........+|.+..+|+++|.+||..|-.+|+-+.
T Consensus 199 ~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 199 DAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLY 256 (309)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3467777777777666554332 22334778999999999999999999998887764
No 181
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.92 E-value=0.002 Score=70.82 Aligned_cols=141 Identities=16% Similarity=0.067 Sum_probs=80.4
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM 102 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L 102 (670)
.-..|+++++ +|+.+|.. ..++|+.|.+.++ +++.+|.. +++|++|+++++ +|+.+. . ..++|++|
T Consensus 202 ~~~~LdLs~~-~LtsLP~~---l~~~L~~L~L~~N-~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP---~--lp~sL~~L 267 (788)
T PRK15387 202 GNAVLNVGES-GLTTLPDC---LPAHITTLVIPDN-NLTSLPAL---PPELRTLEVSGN-QLTSLP---V--LPPGLLEL 267 (788)
T ss_pred CCcEEEcCCC-CCCcCCcc---hhcCCCEEEccCC-cCCCCCCC---CCCCcEEEecCC-ccCccc---C--ccccccee
Confidence 4556777777 78877753 2358999999874 57777643 589999999886 777762 1 24688888
Q ss_pred ccccccccceecccc---------ccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCcccccc
Q 037562 103 EIESCDKITEIVLVD---------DVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSG 173 (670)
Q Consensus 103 ~i~~c~~l~~~~~~~---------~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~ 173 (670)
++.++. ++.++... ......-...+|+|+.|.+++. +++.++. ..++|+.|.+.+| ++..+|.
T Consensus 268 ~Ls~N~-L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N-~L~~Lp~-----lp~~L~~L~Ls~N-~L~~LP~ 339 (788)
T PRK15387 268 SIFSNP-LTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDN-QLASLPA-----LPSELCKLWAYNN-QLTSLPT 339 (788)
T ss_pred eccCCc-hhhhhhchhhcCEEECcCCccccccccccccceeECCCC-ccccCCC-----CcccccccccccC-ccccccc
Confidence 887763 43332100 0000000012355666666554 4444322 1234566666554 3445553
Q ss_pred CCcCCCCccceeeee
Q 037562 174 GELSTPNLHKVQLSR 188 (670)
Q Consensus 174 ~~~~~~~L~~l~i~~ 188 (670)
..++|+.|++++
T Consensus 340 ---lp~~Lq~LdLS~ 351 (788)
T PRK15387 340 ---LPSGLQELSVSD 351 (788)
T ss_pred ---cccccceEecCC
Confidence 124667776654
No 182
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.91 E-value=0.029 Score=50.58 Aligned_cols=91 Identities=18% Similarity=0.159 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCC-hHHHHHH
Q 037562 296 PQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGA-LIPLLAE 374 (670)
Q Consensus 296 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~-i~~Ll~~ 374 (670)
+.+|..++.+++.++...+...+ ..++.+...|+++++.+|..|+.+|..|...+.. .-.|. +..++..
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-----k~k~~l~~~~l~~ 71 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI-----KVKGQLFSRILKL 71 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-----eehhhhhHHHHHH
Confidence 78999999999999885554433 3478899999999999999999999999854321 11122 3677777
Q ss_pred hcccCChhHHHHHHHHHHhhhcC
Q 037562 375 LNENANLSMLRTATWTLFNFCRG 397 (670)
Q Consensus 375 l~~~~~~~~~~~a~~~L~~l~~~ 397 (670)
+ .+++++++..|..++..+...
T Consensus 72 l-~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 L-VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred H-cCCCHHHHHHHHHHHHHHHHh
Confidence 7 888999999999999999987
No 183
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.90 E-value=0.033 Score=47.78 Aligned_cols=126 Identities=16% Similarity=0.107 Sum_probs=97.8
Q ss_pred HHHHHhcCChHHHHHHhcccCC-----hhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccC--ChhHHHHHHHH
Q 037562 359 RDLVLSQGALIPLLAELNENAN-----LSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSN--DEEVLTDACWA 431 (670)
Q Consensus 359 ~~~i~~~~~i~~Ll~~l~~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~al~~ 431 (670)
...++..+++..|++.+.+... .++...++.++..|.++.-..=.......+..++...... |..+...++..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI 83 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI 83 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence 4567788899999999966553 4777888999999888752221223356777777777644 68999999999
Q ss_pred HHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchh
Q 037562 432 LSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQ 484 (670)
Q Consensus 432 L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 484 (670)
|-+++.+++...+.+.+.=-++.++..|+.++.+++..|+..+..+-...++.
T Consensus 84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 99999988877777777677899999999999999999999888886655443
No 184
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.88 E-value=0.0027 Score=41.07 Aligned_cols=39 Identities=46% Similarity=0.683 Sum_probs=35.2
Q ss_pred HHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcC
Q 037562 526 EQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATK 564 (670)
Q Consensus 526 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 564 (670)
+....+.+.|+++.|++++.+++.+++..|+++|.|++.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 466778899999999999999999999999999999863
No 185
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.88 E-value=0.0093 Score=64.16 Aligned_cols=190 Identities=15% Similarity=0.114 Sum_probs=131.1
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh-------------HHHHHhcCChHHHHHHhcccCChhHHHHHHHHH
Q 037562 325 AVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC-------------RDLVLSQGALIPLLAELNENANLSMLRTATWTL 391 (670)
Q Consensus 325 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-------------~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L 391 (670)
+-..++.+|++ +++-..++.++.-+..+.+.. |+.++ ...+|.+++... ..+...+.+-..+|
T Consensus 816 ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~-t~~~~~K~~yl~~L 891 (1030)
T KOG1967|consen 816 IAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFE-TAPGSQKHNYLEAL 891 (1030)
T ss_pred HHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhc-cCCccchhHHHHHH
Confidence 34566777765 344555666666666555432 22222 245788888874 55566777888888
Q ss_pred HhhhcCCCCCChh-hhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCC---ccch
Q 037562 392 FNFCRGKPQPPFN-QVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSS---SSVL 467 (670)
Q Consensus 392 ~~l~~~~~~~~~~-~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~---~~v~ 467 (670)
++...+-|..... .....+|.|++.|.-+|..++..++.++.-+....+......++ -+++.+..+=.+.+ ..+|
T Consensus 892 shVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR 970 (1030)
T KOG1967|consen 892 SHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVR 970 (1030)
T ss_pred HHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHH
Confidence 8888765543222 23678899999999999999999999998877554443332332 46677776666654 4589
Q ss_pred hHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHh
Q 037562 468 TPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNI 520 (670)
Q Consensus 468 ~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l 520 (670)
..|+.++..+....|...-......++..|...|.+. ..-||++|+.+=.+.
T Consensus 971 ~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 971 EDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQNW 1022 (1030)
T ss_pred HHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhhh
Confidence 9999999999986665544455667889999999988 888999998765543
No 186
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.85 E-value=0.0047 Score=48.67 Aligned_cols=91 Identities=15% Similarity=0.159 Sum_probs=66.7
Q ss_pred HHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCC
Q 037562 384 LRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSS 463 (670)
Q Consensus 384 ~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~ 463 (670)
++.++.+|+..+..-+.........+++.++..+.++|..||.+|+.+|.+++....+..-... ..++..+.+++.+.+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f-~~IF~~L~kl~~D~d 81 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF-NEIFDALCKLSADPD 81 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCc
Confidence 4456666776665554444555588999999999999999999999999999865443332222 368888999999999
Q ss_pred ccchhHHHHHHHH
Q 037562 464 SSVLTPALRTIRN 476 (670)
Q Consensus 464 ~~v~~~a~~~L~~ 476 (670)
++|+..| ..|-+
T Consensus 82 ~~Vr~~a-~~Ld~ 93 (97)
T PF12755_consen 82 ENVRSAA-ELLDR 93 (97)
T ss_pred hhHHHHH-HHHHH
Confidence 9888776 34433
No 187
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.77 E-value=0.029 Score=60.10 Aligned_cols=227 Identities=11% Similarity=0.096 Sum_probs=145.4
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHH
Q 037562 283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362 (670)
Q Consensus 283 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 362 (670)
....+..+.++. +.++-++++-+..+.. ..+....+...+++...+..+++.++-+.-+|+..+..+|...|+
T Consensus 729 ~qeai~sl~d~q-vpik~~gL~~l~~l~e-~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e----- 801 (982)
T KOG4653|consen 729 LQEAISSLHDDQ-VPIKGYGLQMLRHLIE-KRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE----- 801 (982)
T ss_pred HHHHHHHhcCCc-ccchHHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch-----
Confidence 334455566666 7899999999999998 446667777789999999999999999999999999888855433
Q ss_pred HhcCChHHHHHHhccc---CChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 037562 363 LSQGALIPLLAELNEN---ANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGT 439 (670)
Q Consensus 363 ~~~~~i~~Ll~~l~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~ 439 (670)
..++-+...-.+. ..++.+-.+..++.++...-..-.......++...++..+++|...|..++..+++++...
T Consensus 802 ---~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~ 878 (982)
T KOG4653|consen 802 ---DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLL 878 (982)
T ss_pred ---hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHH
Confidence 3466666632121 1124444555677776665433333334566677778888888889999999999998543
Q ss_pred hHHHHHHHHcCCHHHHHHhcCC-CCccchhHHHHHHHHhhcCCchhhHHHH---hCCChHHHHHhhccCCchhHHHHHHH
Q 037562 440 NDKVQAVIEAGVYPRLVELLGH-SSSSVLTPALRTIRNIVKGDDFQTQCII---NCGALPYFLDMLVHNHEESIKKEVSW 515 (670)
Q Consensus 440 ~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~---~~~~~~~L~~~l~~~~~~~v~~~a~~ 515 (670)
.......+. .++..++.+.+. ++..+|..|+..+..+-.+.....-.+. .......+.+......+..++..|+.
T Consensus 879 a~~vsd~~~-ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql 957 (982)
T KOG4653|consen 879 AFQVSDFFH-EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQL 957 (982)
T ss_pred hhhhhHHHH-HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 322222211 344555555544 5567899999999988776543322221 11233344444444435556666655
Q ss_pred HHHHh
Q 037562 516 IISNI 520 (670)
Q Consensus 516 ~L~~l 520 (670)
++-.+
T Consensus 958 ~leei 962 (982)
T KOG4653|consen 958 CLEEI 962 (982)
T ss_pred HHHHH
Confidence 55443
No 188
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.77 E-value=0.016 Score=61.71 Aligned_cols=241 Identities=13% Similarity=0.053 Sum_probs=159.6
Q ss_pred ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH-HhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHH
Q 037562 313 TSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALG-NVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTL 391 (670)
Q Consensus 313 ~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~-~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L 391 (670)
...-+...+..|+...|+.+...+.+.-+.....+|. .+...... ....++++.+.+.++..---...++.++
T Consensus 493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~en~E~L~al 566 (748)
T KOG4151|consen 493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGLENFEALEAL 566 (748)
T ss_pred hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence 4455556678899999999988877777777777777 33221111 1124666666663333222233788899
Q ss_pred HhhhcCCCCCChhhh-hhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHH-cCCHHHHHHhcCCCCccchhH
Q 037562 392 FNFCRGKPQPPFNQV-RPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIE-AGVYPRLVELLGHSSSSVLTP 469 (670)
Q Consensus 392 ~~l~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~ 469 (670)
.||+..+........ .-.++.+-.++..+++..+..++.++.||.-++.-....+.+ ....+.....+...+.....+
T Consensus 567 tnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA 646 (748)
T KOG4151|consen 567 TNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELA 646 (748)
T ss_pred hcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhh
Confidence 999887744433333 455566677777889999999999999999776655555555 244555555566666667777
Q ss_pred HHHHHHHhhcCCchhhH-HHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCC
Q 037562 470 ALRTIRNIVKGDDFQTQ-CIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTE 548 (670)
Q Consensus 470 a~~~L~~l~~~~~~~~~-~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 548 (670)
++.++..++......+. ..-...+...+..++.+. +.+++......+.|+.....+....+.....++.+...-.-.-
T Consensus 647 ~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~ 725 (748)
T KOG4151|consen 647 GAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNR 725 (748)
T ss_pred ccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 77777766655544444 333456788899999999 9999999999999976666676767777667776666544333
Q ss_pred hhHHHHHHHHHH
Q 037562 549 FDTKKEAAWAIS 560 (670)
Q Consensus 549 ~~v~~~a~~aL~ 560 (670)
...++.+..+|.
T Consensus 726 a~~~~~~~~~l~ 737 (748)
T KOG4151|consen 726 APKREDAAPCLS 737 (748)
T ss_pred hhhhhhhhhHHH
Confidence 344444444443
No 189
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.73 E-value=0.00024 Score=71.49 Aligned_cols=161 Identities=14% Similarity=0.038 Sum_probs=85.3
Q ss_pred CccccEEEeccCcCccccccc---ccccCCCCcEEEEecCCCCc----cccCCCccc-cccceeeeccccccccccc---
Q 037562 21 GMEVKISEAYNCYRLENILIE---ESSVMNNLVILCVHCCDHLI----NLVPSSTSF-QNLTNLVVSHCKRLKIVLT--- 89 (670)
Q Consensus 21 ~~~L~~L~i~~c~~l~~~~~~---~~~~~~~L~~L~i~~c~~l~----~~~~~~~~~-~~L~~L~i~~c~~l~~l~~--- 89 (670)
..+|+.|.+++|+--...+.. .... ++|++|++++|.--. .+......+ ++|+.|++++|. +..-..
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~ 157 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEAL 157 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHH
Confidence 348999999888643222211 1122 559999998886221 111122345 788999999885 221000
Q ss_pred chhhhcccccceeccccccccceecccccccccccccccccccccccccccccccccc---CCcccCCCCccEEeEecCC
Q 037562 90 SSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCS---GNCAFTFPSLEILVVNYCP 166 (670)
Q Consensus 90 ~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~~~~L~~L~i~~C~ 166 (670)
...+..+++|++|++.+|. +..- ...........+++|+.|.+++|. +..... ......+|+|+.|++++|+
T Consensus 158 ~~~~~~~~~L~~L~l~~n~-l~~~---~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 158 AKALRANRDLKELNLANNG-IGDA---GIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHhCCCcCEEECcCCC-CchH---HHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 1234456788888888874 2110 000000112234688888888774 221110 0113356788888888875
Q ss_pred Ccc-----ccccCCc-CCCCccceeeeec
Q 037562 167 NMK-----IFSGGEL-STPNLHKVQLSRW 189 (670)
Q Consensus 167 ~l~-----~~p~~~~-~~~~L~~l~i~~~ 189 (670)
+. .+..... ..++|++|+++++
T Consensus 233 -l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 233 -LTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred -CchHHHHHHHHHHhccCCCceEEEccCC
Confidence 22 1111110 2367888877654
No 190
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.69 E-value=0.00098 Score=59.08 Aligned_cols=103 Identities=15% Similarity=0.185 Sum_probs=35.5
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhh-hcccccce
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIA-KTLVRLRY 101 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~-~~l~~L~~ 101 (670)
.+++|++.++. ++.+-.. ...+.+|+.|+++++. +..+. ....+++|+.|.+++= +++++. ..+ ..+|+|++
T Consensus 20 ~~~~L~L~~n~-I~~Ie~L-~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~N-~I~~i~--~~l~~~lp~L~~ 92 (175)
T PF14580_consen 20 KLRELNLRGNQ-ISTIENL-GATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSNN-RISSIS--EGLDKNLPNLQE 92 (175)
T ss_dssp -----------------S---TT-TT--EEE-TTS---S--T-T----TT--EEE--SS----S-C--HHHHHH-TT--E
T ss_pred ccccccccccc-cccccch-hhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCCC-CCCccc--cchHHhCCcCCE
Confidence 67888888763 4433221 1257899999998875 55543 4556889999998754 555552 223 46899999
Q ss_pred eccccc--cccceecccccccccccccccccccccccccccc
Q 037562 102 MEIESC--DKITEIVLVDDVVAQDEVITFRELKELNLLQMQN 141 (670)
Q Consensus 102 L~i~~c--~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 141 (670)
|++.+- .++.++ .....+|+|+.|++.+-|=
T Consensus 93 L~L~~N~I~~l~~l---------~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 93 LYLSNNKISDLNEL---------EPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp EE-TTS---SCCCC---------GGGGG-TT--EEE-TT-GG
T ss_pred EECcCCcCCChHHh---------HHHHcCCCcceeeccCCcc
Confidence 998753 222222 2335699999999998774
No 191
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.64 E-value=0.053 Score=50.46 Aligned_cols=222 Identities=11% Similarity=0.113 Sum_probs=136.1
Q ss_pred ChhHHHHHHHHHHHhccCChHHHHHHHHc-CCHHHHHH-------hcCCCCcc-----chhHHHHHHHHhhcCCchhhHH
Q 037562 421 DEEVLTDACWALSYLSDGTNDKVQAVIEA-GVYPRLVE-------LLGHSSSS-----VLTPALRTIRNIVKGDDFQTQC 487 (670)
Q Consensus 421 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~-~~i~~L~~-------lL~~~~~~-----v~~~a~~~L~~l~~~~~~~~~~ 487 (670)
+++.|+.|+.-|+.--+..++....+..+ |.+..+++ .+..+.-. -..+|+..+-.+|. .++....
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence 56778888888877766656655555554 55555433 23332211 12334455555566 5566777
Q ss_pred HHhCCChHHHHHhhccCC----chhHHHHHHHHHHHhhc-CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHh
Q 037562 488 IINCGALPYFLDMLVHNH----EESIKKEVSWIISNITC-GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNA 562 (670)
Q Consensus 488 l~~~~~~~~L~~~l~~~~----~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 562 (670)
++++.+.-.|..+|+... -+.+|-.+.++++.+.. .+++.+..+.+.+++|..++.++.++.-.|..|...+..+
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 889998888888886542 24578889999999987 5678888899999999999999999999999999999998
Q ss_pred cCCCCHHHHHHHHH--------cCCcHHHHh-hccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhc
Q 037562 563 TKFGTHEQIKHLVR--------EGCVKPLCD-LLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAE 633 (670)
Q Consensus 563 ~~~~~~~~~~~l~~--------~~~i~~L~~-ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g 633 (670)
... +....++.+ ..++..++. +.+.+++.+.+.++++..++.++.. .+..+.. .
T Consensus 167 L~d--d~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr--------------ar~aL~~-~ 229 (262)
T PF04078_consen 167 LLD--DVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR--------------AREALRQ-C 229 (262)
T ss_dssp HHS--HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT--------------HHHHHHH-H
T ss_pred Hcc--hhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH--------------HHHHHHH-h
Confidence 873 344443322 113333333 4467788888899888888775433 2333422 1
Q ss_pred hHHHHHHh----hcCCCHHHHHHHHHHHHHh
Q 037562 634 GLEKIENL----QSHDDNGISEKAVEILETY 660 (670)
Q Consensus 634 ~~~~l~~L----~~~~~~~v~~~a~~~l~~~ 660 (670)
..+.|.+- .-.+|+.++..-.+++.+.
T Consensus 230 LP~~Lrd~~f~~~l~~D~~~k~~l~qLl~nl 260 (262)
T PF04078_consen 230 LPDQLRDGTFSNILKDDPSTKRWLQQLLSNL 260 (262)
T ss_dssp S-GGGTSSTTTTGGCS-HHHHHHHHHHHHHT
T ss_pred CcHHHhcHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 12222111 1234777787777776643
No 192
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=0.15 Score=51.53 Aligned_cols=270 Identities=11% Similarity=0.071 Sum_probs=141.8
Q ss_pred CCChHHHHHh----hCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC
Q 037562 323 HGAVPIFVKL----LASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK 398 (670)
Q Consensus 323 ~~~i~~L~~l----L~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~ 398 (670)
.|.+..++.. ..+++..++..|+++|+|.++..|.-.... ..-.+..++.-|.++.+.+|+-.+..+|..+....
T Consensus 253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th-~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTH-KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHh-HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 3445444443 345888999999999999998855322211 12246677777777778899999999988877654
Q ss_pred CCCChhh-hhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHc---CCHHHHHHhcCCCCccchhHHHHHH
Q 037562 399 PQPPFNQ-VRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEA---GVYPRLVELLGHSSSSVLTPALRTI 474 (670)
Q Consensus 399 ~~~~~~~-~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~i~~L~~lL~~~~~~v~~~a~~~L 474 (670)
.+..... .-++.-.+..++.+.+++++.++...++.++.......+..... +....++-.++++++. ...||+..
T Consensus 332 ~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~-va~ACr~~ 410 (533)
T KOG2032|consen 332 SNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPY-VARACRSE 410 (533)
T ss_pred hhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChH-HHHHHHHH
Confidence 3332221 23444567778889999999999988888774322222221111 2223444445556654 34566666
Q ss_pred HHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHH-HHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHH
Q 037562 475 RNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKE-VSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKK 553 (670)
Q Consensus 475 ~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~-a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 553 (670)
...+..+-. .+... ++++. .+ +......+.. .-| ...+....++....+.. ...-++.+.-+.++.
T Consensus 411 ~~~c~p~l~-rke~~--~~~q~---~l-d~~~~~~q~Fyn~~-c~~L~~i~~d~l~~~~t-----~~~~~f~sswe~vr~ 477 (533)
T KOG2032|consen 411 LRTCYPNLV-RKELY--HLFQE---SL-DTDMARFQAFYNQW-CIQLNHIHPDILMLLLT-----EDQHIFSSSWEQVRE 477 (533)
T ss_pred HHhcCchhH-HHHHH--HHHhh---hh-HHhHHHHHHHHHHH-HHHHhhhCHHHHHHHHH-----hchhheecchHHHHH
Confidence 555442211 11110 11111 11 1101111110 111 11121122332222211 111222232234555
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHH
Q 037562 554 EAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILK 607 (670)
Q Consensus 554 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~ 607 (670)
.|...-.+...+-.+....+.--......+..+..++-++++..+.+|+..+..
T Consensus 478 aavl~t~~~vd~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~ 531 (533)
T KOG2032|consen 478 AAVLKTTRSVDSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV 531 (533)
T ss_pred HHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence 554444444443233333333233356667777889999999999999987653
No 193
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.61 E-value=0.11 Score=51.43 Aligned_cols=172 Identities=12% Similarity=0.064 Sum_probs=115.0
Q ss_pred hhhHHHHH-HhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCc-hh
Q 037562 407 RPALPVLA-QLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDD-FQ 484 (670)
Q Consensus 407 ~~~i~~L~-~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~ 484 (670)
.+.++.++ +.+++.++.+|..++.|++-.+--+..... ..++.+...++.++..++..|+.++..+..... ..
T Consensus 25 ~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~ 99 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI 99 (298)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence 35565544 888999999999999999998865553333 345667777777788899999999998875322 11
Q ss_pred hHH-------HHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh----cCChhHHH
Q 037562 485 TQC-------IINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ----NTEFDTKK 553 (670)
Q Consensus 485 ~~~-------l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~----~~~~~v~~ 553 (670)
... .....+...+.+.+.+. +++++..|+..++.+...+.-.- ...++..|+-..- .++.++++
T Consensus 100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ 174 (298)
T PF12719_consen 100 FDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQ 174 (298)
T ss_pred ccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHH
Confidence 111 11235677888999999 99999999999999865321111 0223444444333 23467787
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCC
Q 037562 554 EAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCA 590 (670)
Q Consensus 554 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~ 590 (670)
.-...+-..+.. ++.+ +..+....++.+..+.+..
T Consensus 175 ~L~~Ffp~y~~s-~~~~-Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 175 CLSVFFPVYASS-SPEN-QERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHHcC-CHHH-HHHHHHHHHHHHHHHHhCc
Confidence 777777777775 4444 4445556777777776543
No 194
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.59 E-value=0.0007 Score=66.18 Aligned_cols=165 Identities=18% Similarity=0.242 Sum_probs=101.2
Q ss_pred cccEEEeccCcCcccccc-cccccCCCCcEEEEecCCCCccccC--CCccccccceeeecccccccccccchhhhccccc
Q 037562 23 EVKISEAYNCYRLENILI-EESSVMNNLVILCVHCCDHLINLVP--SSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRL 99 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~-~~~~~~~~L~~L~i~~c~~l~~~~~--~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L 99 (670)
.+..+++..|..+++... .-...+..|+.|..++|.++...+- -....++|+.|.+++|..+.+........+.+.|
T Consensus 269 ~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~L 348 (483)
T KOG4341|consen 269 EILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHL 348 (483)
T ss_pred HhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhh
Confidence 345555558877765541 1113467788888888887644321 1234578888888988887766444445678888
Q ss_pred ceeccccccccceeccccccccccccccccccccccccccccccccccC---CcccCCCCccEEeEecCCCccc-cccCC
Q 037562 100 RYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSG---NCAFTFPSLEILVVNYCPNMKI-FSGGE 175 (670)
Q Consensus 100 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~~~~~L~~L~i~~C~~l~~-~p~~~ 175 (670)
+.+.+.+|.....- . -..-....|.|+.|+++.|...+.-... .....+..|+.+.+.+||.+.. .-+..
T Consensus 349 e~l~~e~~~~~~d~-----t-L~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l 422 (483)
T KOG4341|consen 349 ERLDLEECGLITDG-----T-LASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL 422 (483)
T ss_pred hhhcccccceehhh-----h-HhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHH
Confidence 88888888654321 0 0011135788888888888777665211 0123456788888888887641 11122
Q ss_pred cCCCCccceeeeeccCCc
Q 037562 176 LSTPNLHKVQLSRWDGEE 193 (670)
Q Consensus 176 ~~~~~L~~l~i~~~~~~~ 193 (670)
...++|+.+++.++.+..
T Consensus 423 ~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 423 SICRNLERIELIDCQDVT 440 (483)
T ss_pred hhCcccceeeeechhhhh
Confidence 346788887776665553
No 195
>PRK14707 hypothetical protein; Provisional
Probab=96.59 E-value=2.6 Score=50.74 Aligned_cols=351 Identities=16% Similarity=0.126 Sum_probs=210.9
Q ss_pred HHHHHHhhc-CCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-C-CHHHHHHHHHHHHHhhCCCchhH
Q 037562 283 VPRFVEFLM-RQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-P-SVDVRKQTVWALGNVAGDSPRCR 359 (670)
Q Consensus 283 l~~L~~ll~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~-~-~~~v~~~a~~~L~~l~~~~~~~~ 359 (670)
+..++..++ -+++.+.+..+......++. ++..++.+ +..+|..+++.++. + ++..+ +++..|.....+....+
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~-~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~-~aa~~la~~l~~~~~l~ 241 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAALVAS-DDRLRSAM-DAQGVATVLNALCKWPDTPDCG-NAVSALAERLADESRLR 241 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhcC-Chhhhccc-chHHHHHHHHHHhcCCCChhHH-HHHHHHHHHHcCcHHHH
Confidence 444555443 34446777777777777776 44555544 45566677776665 4 44554 45555544443444444
Q ss_pred HHHHhcCChHHHHHHhcccCChhHHHHHHHHHHh-hhcCCCCCChhhh-hhhHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 037562 360 DLVLSQGALIPLLAELNENANLSMLRTATWTLFN-FCRGKPQPPFNQV-RPALPVLAQLIRSNDEEVLTDACWALSYLSD 437 (670)
Q Consensus 360 ~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~ 437 (670)
..+ +...+-..++.+.+-++..+-..++.++.. +..+ +....... ..+-..+-.+-+-++..+...+...+..=..
T Consensus 242 ~~~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~-~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~ 319 (2710)
T PRK14707 242 NEL-KPQELGNALNALSKWADTPVCAAAASALAERLVDD-PGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLA 319 (2710)
T ss_pred HhC-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhh-HHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHh
Confidence 444 333466777777677777666666666554 4433 22222222 2333334444456677777777666655443
Q ss_pred CChHHHHHHHHcCCHHHHHHhcCC-CCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHH
Q 037562 438 GTNDKVQAVIEAGVYPRLVELLGH-SSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWI 516 (670)
Q Consensus 438 ~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~ 516 (670)
.+.+..+ -++...+...+.-|+. ++..+...|+..|..-...++...+ -++..++...++.+..-++..+...|+..
T Consensus 320 ~d~~l~~-~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~-~l~~q~~a~~lNalsKWp~~~~c~~aa~~ 397 (2710)
T PRK14707 320 DDPELCK-ALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRK-DLEPQGVSSVLNALSKWPDTPVCAAAASA 397 (2710)
T ss_pred ccHhhhh-ccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhc-ccchhHHHHHHhhhhcCCCchHHHHHHHH
Confidence 3444443 2333444555555555 5656666666666555444544444 34455666666666655477777777777
Q ss_pred HHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHH
Q 037562 517 ISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVT 596 (670)
Q Consensus 517 L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 596 (670)
|..-..++++..+.+-..|+-..|-.+-+=++..+...++.+|.--..+ +.+..+.|-..++...|-.+-+.+|..+..
T Consensus 398 LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~-d~~l~~~~~p~~va~~LnalSKWPd~p~c~ 476 (2710)
T PRK14707 398 LAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAH-DTELCKALDPINVTQALDALSKWPDTPICG 476 (2710)
T ss_pred HHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhc-cHHHHhhcChHHHHHHHHHhhcCCCChhHH
Confidence 7776667777777776666666666666667888888888888777665 667777666666677777777899998887
Q ss_pred HHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHH
Q 037562 597 VCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAV 654 (670)
Q Consensus 597 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~ 654 (670)
.+.+.|-.-+..... .++.|.-.+....|..|..-++......|+
T Consensus 477 ~aa~~La~~l~~~~~-------------l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~ 521 (2710)
T PRK14707 477 QTASALAARLAHERR-------------LRKALKPQEVVIALHSLSKWPDTPICAEAA 521 (2710)
T ss_pred HHHHHHHHHhcccHH-------------HHhhcCHHHHHHHHHHhhcCCCcHHHHHHH
Confidence 777777554443222 344555556666777777776655554444
No 196
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.21 Score=52.88 Aligned_cols=235 Identities=14% Similarity=0.126 Sum_probs=143.5
Q ss_pred ccHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 037562 238 EILPAMVDGVWSD-DNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN 316 (670)
Q Consensus 238 ~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~ 316 (670)
+....|.+.|+.. ++.++.-++-.|.-..-+. .. .. +...+-+.+..++ .-.-++|..+++-+..++..
T Consensus 413 ~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGS--a~-~e-----iYe~lKevLy~D~-AvsGEAAgi~MGl~mlGt~~- 482 (929)
T KOG2062|consen 413 GITDYLLQQLKTAENEVVRHGACLGLGLAGMGS--AN-EE-----IYEKLKEVLYNDS-AVSGEAAGIAMGLLMLGTAN- 482 (929)
T ss_pred cHHHHHHHHHHhccchhhhhhhhhhccchhccc--cc-HH-----HHHHHHHHHhccc-hhhhhHHHHhhhhHhhCcCc-
Confidence 4577788888754 4555555555554333331 11 11 3455666666666 45566666677766553321
Q ss_pred HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHh--
Q 037562 317 TKVVIDHGAVPIFVKLLAS-PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFN-- 393 (670)
Q Consensus 317 ~~~i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~-- 393 (670)
. .++.-+...-.. +.+.+.+...-.++-...+..+ ...++++-+..+.|+-+|...+.++.-
T Consensus 483 ~------eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe---------~Ad~lI~el~~dkdpilR~~Gm~t~alAy 547 (929)
T KOG2062|consen 483 Q------EAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQE---------DADPLIKELLRDKDPILRYGGMYTLALAY 547 (929)
T ss_pred H------HHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhh---------hhHHHHHHHhcCCchhhhhhhHHHHHHHH
Confidence 1 234445554443 5555655444444433322221 355666666677888888876665543
Q ss_pred hhcCCCCCChhhhhhhHHHHHHh-hccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcC-CCCccchhHHH
Q 037562 394 FCRGKPQPPFNQVRPALPVLAQL-IRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLG-HSSSSVLTPAL 471 (670)
Q Consensus 394 l~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~ 471 (670)
..... .+++..|+.. ..+.+.+|+.+|..+|+.++..+++. .+..+.+|. +-++-||..|+
T Consensus 548 ~GTgn--------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLses~N~HVRyGaA 610 (929)
T KOG2062|consen 548 VGTGN--------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLSESYNPHVRYGAA 610 (929)
T ss_pred hccCc--------hhhHHHhhcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHhhhcChhhhhhHH
Confidence 22221 3455556655 55678999999999999998776643 345555664 46888999999
Q ss_pred HHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc
Q 037562 472 RTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC 522 (670)
Q Consensus 472 ~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 522 (670)
.+|+-.|.+..... .+..|-.+..+. ..-||+.|+-+++.+..
T Consensus 611 ~ALGIaCAGtG~~e-------Ai~lLepl~~D~-~~fVRQgAlIa~amIm~ 653 (929)
T KOG2062|consen 611 MALGIACAGTGLKE-------AINLLEPLTSDP-VDFVRQGALIALAMIMI 653 (929)
T ss_pred HHHhhhhcCCCcHH-------HHHHHhhhhcCh-HHHHHHHHHHHHHHHHH
Confidence 99998887664322 233444555555 78899999999988765
No 197
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.051 Score=58.28 Aligned_cols=225 Identities=11% Similarity=0.159 Sum_probs=138.5
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhh
Q 037562 327 PIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQV 406 (670)
Q Consensus 327 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 406 (670)
+.-+..+.++.+.++..++..|..+.... .....+...+++...+..+ .+.|+-+.-+|...+..+|.-.|
T Consensus 730 qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~L-kdedsyvyLnaI~gv~~Lcevy~------- 800 (982)
T KOG4653|consen 730 QEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTL-KDEDSYVYLNAIRGVVSLCEVYP------- 800 (982)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHh-cccCceeeHHHHHHHHHHHHhcc-------
Confidence 33444556677888999999999998644 2344566677888888888 77777787788888888887533
Q ss_pred hhhHHHHHHh-hccCC---hhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCc
Q 037562 407 RPALPVLAQL-IRSND---EEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDD 482 (670)
Q Consensus 407 ~~~i~~L~~l-L~~~~---~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 482 (670)
..++|.+... ....+ ++-+..+-.++.+++..-.+......+ -++..++..+++++...|..++..+++++....
T Consensus 801 e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a 879 (982)
T KOG4653|consen 801 EDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLA 879 (982)
T ss_pred hhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHh
Confidence 4456666553 22221 233444446666666444444343333 566777788888888889999999999987544
Q ss_pred hhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHh---cCChHHHHHHhh-cCChhHHHHHHHH
Q 037562 483 FQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVID---SGLIGPIVNLLQ-NTEFDTKKEAAWA 558 (670)
Q Consensus 483 ~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~---~~~i~~L~~ll~-~~~~~v~~~a~~a 558 (670)
......+ ...+..++.+.+.+...-+|+.|+..+..+..+.....-.+.. .+....+..... +.+..++..|+.+
T Consensus 880 ~~vsd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~ 958 (982)
T KOG4653|consen 880 FQVSDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLC 958 (982)
T ss_pred hhhhHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 3222222 1244555666655548889999999999987754332222221 122223333333 3345566666665
Q ss_pred HHHh
Q 037562 559 ISNA 562 (670)
Q Consensus 559 L~~l 562 (670)
+-.+
T Consensus 959 leei 962 (982)
T KOG4653|consen 959 LEEI 962 (982)
T ss_pred HHHH
Confidence 5544
No 198
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.56 E-value=2.3 Score=49.40 Aligned_cols=141 Identities=13% Similarity=0.111 Sum_probs=96.9
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 037562 281 GVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRD 360 (670)
Q Consensus 281 g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 360 (670)
+.+..++..+..+. ..+|..|.+||..+...++.... ...+-..+..-+.+.+..||+.|+..+|......++.-.
T Consensus 816 ~yLk~Il~~l~e~~-ialRtkAlKclS~ive~Dp~vL~---~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 816 PYLKLILSVLGENA-IALRTKALKCLSMIVEADPSVLS---RPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHHhcCch-HHHHHHHHHHHHHHHhcChHhhc---CHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHH
Confidence 35777788888777 89999999999999986654321 122334455556678899999999999988766555333
Q ss_pred HHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhc---cCChhHHHHHHHHHHHhc
Q 037562 361 LVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIR---SNDEEVLTDACWALSYLS 436 (670)
Q Consensus 361 ~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~---~~~~~v~~~al~~L~~l~ 436 (670)
.. ...+...+ .++...||+.+..++..+|...|.-. .....+++++. ++...|+..+..++.++.
T Consensus 892 qy-----Y~~i~erI-lDtgvsVRKRvIKIlrdic~e~pdf~-----~i~~~cakmlrRv~DEEg~I~kLv~etf~klW 959 (1692)
T KOG1020|consen 892 QY-----YDQIIERI-LDTGVSVRKRVIKILRDICEETPDFS-----KIVDMCAKMLRRVNDEEGNIKKLVRETFLKLW 959 (1692)
T ss_pred HH-----HHHHHhhc-CCCchhHHHHHHHHHHHHHHhCCChh-----hHHHHHHHHHHHhccchhHHHHHHHHHHHHHh
Confidence 32 34556666 67778999999999999998865432 22334444444 223347777777776665
No 199
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.046 Score=55.69 Aligned_cols=250 Identities=14% Similarity=0.170 Sum_probs=139.8
Q ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHh
Q 037562 296 PQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAEL 375 (670)
Q Consensus 296 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l 375 (670)
+.++.-++--++-+..++ .++ .+.+.+-.++...+.-.-+.|...++-+.-+... .+ ++..+...-
T Consensus 425 ~~l~yG~~LGiGL~~MgS-an~------eiye~lKe~l~nD~a~~geAa~~gMGl~mLgt~s-~e------ai~dm~tya 490 (926)
T COG5116 425 PELAYGVCLGIGLINMGS-ANR------EIYEKLKELLKNDRALLGEAAVYGMGLLMLGTWS-VE------AIEDMRTYA 490 (926)
T ss_pred HHHHHHHHhhhcchhccc-ccH------HHHHHHHHHHhcchhhhhhhhhhccceeeecCCC-HH------HHHHHHHHh
Confidence 355555555555444422 111 1345666666666655556665555544322211 01 123333333
Q ss_pred cccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHH
Q 037562 376 NENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRL 455 (670)
Q Consensus 376 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L 455 (670)
.......+.+...--++-+.... ...+-..+-+++.+.|+-.|.....+++---.... +.|++..+
T Consensus 491 ~ETqhe~i~Rglgig~aLi~ygr-------qe~add~I~ell~d~ds~lRy~G~fs~alAy~GTg-------n~~vv~~l 556 (926)
T COG5116 491 GETQHERIKRGLGIGFALILYGR-------QEMADDYINELLYDKDSILRYNGVFSLALAYVGTG-------NLGVVSTL 556 (926)
T ss_pred cchhhhhHHhhhhhhhhHhhhhh-------HHHHHHHHHHHhcCchHHhhhccHHHHHHHHhcCC-------cchhHhhh
Confidence 23333344442221122111111 01222356677777787777776655543211111 12567777
Q ss_pred HHh-cCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhc
Q 037562 456 VEL-LGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDS 534 (670)
Q Consensus 456 ~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~ 534 (670)
+.. +++.+.+||..|.-+|+-+|..+. +.+...+++|..+.++.||...+.+|+-.|++...+.
T Consensus 557 Lh~avsD~nDDVrRAAViAlGfvc~~D~---------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~------ 621 (926)
T COG5116 557 LHYAVSDGNDDVRRAAVIALGFVCCDDR---------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV------ 621 (926)
T ss_pred heeecccCchHHHHHHHHheeeeEecCc---------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH------
Confidence 777 677888999999999998887543 3555667777777699999999999999888644322
Q ss_pred CChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCC
Q 037562 535 GLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCAD 591 (670)
Q Consensus 535 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 591 (670)
.+..|-.++.+...-||+.|+.+++-+...++++..... .++++.+.+.+.+++
T Consensus 622 -a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI~~Kh 675 (926)
T COG5116 622 -ATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNV--KRIIKKFNRVIVDKH 675 (926)
T ss_pred -HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhH--HHHHHHHHHHHhhhh
Confidence 344555566677888999999999888765444322221 124455555554433
No 200
>PRK14707 hypothetical protein; Provisional
Probab=96.49 E-value=2.9 Score=50.37 Aligned_cols=399 Identities=15% Similarity=0.071 Sum_probs=218.4
Q ss_pred HHHHHHHhc--CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcC-CCCHHHHHHHHHHHHHHcCCChhh
Q 037562 240 LPAMVDGVW--SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMR-QDYPQLQFKAAWALTNIASGTSEN 316 (670)
Q Consensus 240 i~~l~~~l~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~-~~~~~v~~~a~~~L~~l~~~~~~~ 316 (670)
+..+++... .++.+-+..+......++.. ......+ ..-.|..++..++. +++++.+..+...-..++. ....
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~~--d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~-~~~l 240 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAALVASD--DRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLAD-ESRL 240 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhcCC--hhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-cHHH
Confidence 556666654 34455554444443434332 2222222 33344455554433 5545666655555555555 4444
Q ss_pred HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhh
Q 037562 317 TKVVIDHGAVPIFVKLLAS-PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFC 395 (670)
Q Consensus 317 ~~~i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~ 395 (670)
+..+ +...+-..++.|.. ++...-..++..+..=..+.+..++.+-.. .+...++-+.+-.+..+-+.|+..|..=.
T Consensus 241 ~~~~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q-~vanalNalSKwpd~~vc~~Aa~~la~rl 318 (2710)
T PRK14707 241 RNEL-KPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPI-NVTQALNALSKWADLPVCAEAAIALAERL 318 (2710)
T ss_pred HHhC-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHH-HHHHHHhhhhcCCCchHHHHHHHHHHHHH
Confidence 4443 44445555665554 666566666665554333555555544332 35556677767778788776666665533
Q ss_pred cCCCCCChhhh-hhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC-CCccchhHHHHH
Q 037562 396 RGKPQPPFNQV-RPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH-SSSSVLTPALRT 473 (670)
Q Consensus 396 ~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~ 473 (670)
.+++.-..... .++-..|-.+-+-+|..+...+..+|..=...+++..+.+- ...+..++.-++. ++..+...|+..
T Consensus 319 ~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~~ 397 (2710)
T PRK14707 319 ADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAASA 397 (2710)
T ss_pred hccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHHH
Confidence 33333222222 23333333444456766776666666654444444444333 3455666666655 566666666666
Q ss_pred HHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHH
Q 037562 474 IRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKK 553 (670)
Q Consensus 474 L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 553 (670)
|..=..++++..+ -++...+...++.|..-++..+...++..|..-..++.+..+.+--.++...|-.+-+=+|..+..
T Consensus 398 LA~~l~~d~~l~~-~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~ 476 (2710)
T PRK14707 398 LAEHVVDDLELRK-GLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICG 476 (2710)
T ss_pred HHHHhccChhhhh-hcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHH
Confidence 6655555555444 445556666666666554777888888888777677676665555445444444444556777777
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHH-HHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHh
Q 037562 554 EAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVT-VCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEA 632 (670)
Q Consensus 554 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~-~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (670)
.|+..|..-..+ +++..+.|-..++...|-.+-+.++..... .+.++...+.... .....|..-
T Consensus 477 ~aa~~La~~l~~-~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~~--------------~l~~~~~~~ 541 (2710)
T PRK14707 477 QTASALAARLAH-ERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDEL--------------QLRKAFDAH 541 (2710)
T ss_pred HHHHHHHHHhcc-cHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccch--------------hhhhhhhhH
Confidence 777777655444 556666666666777777777888765433 3334444433211 123344444
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562 633 EGLEKIENLQSHDDNGISEKAVEILETYW 661 (670)
Q Consensus 633 g~~~~l~~L~~~~~~~v~~~a~~~l~~~~ 661 (670)
+....+..+..+.+.+.-..+..-|...+
T Consensus 542 ~~~~~lnalSKwp~s~~C~~A~~~iA~~l 570 (2710)
T PRK14707 542 QVVNTLKALSKWPDKQLCAVAASGLAERL 570 (2710)
T ss_pred HHHHHHHhhhcCCchhHHHHHHHHHHHHh
Confidence 44555666666666665666555555443
No 201
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.39 E-value=0.00055 Score=73.46 Aligned_cols=90 Identities=19% Similarity=0.244 Sum_probs=55.2
Q ss_pred CccccEEEeccC-cCccccc---ccccccCCCCcEEEEecCCCCccccC--CCccccccceeeecccccccccccchhhh
Q 037562 21 GMEVKISEAYNC-YRLENIL---IEESSVMNNLVILCVHCCDHLINLVP--SSTSFQNLTNLVVSHCKRLKIVLTSSIAK 94 (670)
Q Consensus 21 ~~~L~~L~i~~c-~~l~~~~---~~~~~~~~~L~~L~i~~c~~l~~~~~--~~~~~~~L~~L~i~~c~~l~~l~~~~~~~ 94 (670)
..+|+.|.+.+| ......+ ......+++|++|++.+|..+....- -...+++|+.|.+.+|..+++........
T Consensus 213 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~ 292 (482)
T KOG1947|consen 213 CPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAE 292 (482)
T ss_pred CchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHH
Confidence 348888888873 3322222 11124567888888888876433211 11226788888888887766543334456
Q ss_pred cccccceecccccccc
Q 037562 95 TLVRLRYMEIESCDKI 110 (670)
Q Consensus 95 ~l~~L~~L~i~~c~~l 110 (670)
.+|+|++|++++|..+
T Consensus 293 ~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 293 RCPSLRELDLSGCHGL 308 (482)
T ss_pred hcCcccEEeeecCccc
Confidence 7788888888888776
No 202
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.36 E-value=0.1 Score=58.11 Aligned_cols=145 Identities=13% Similarity=0.134 Sum_probs=115.9
Q ss_pred hhhhHHHHHHhhc----cCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcC-CCCccchhHHHHHHHHhhcC
Q 037562 406 VRPALPVLAQLIR----SNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLG-HSSSSVLTPALRTIRNIVKG 480 (670)
Q Consensus 406 ~~~~i~~L~~lL~----~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~ 480 (670)
.....|.++...+ .+||+++.+|.-+++.+..-+..... .-++.++..+. ++++.+|.++.-+++.++..
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~ 991 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR 991 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhh
Confidence 3556677777774 45799999999999998765443333 45688888887 78999999999999999886
Q ss_pred CchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHH
Q 037562 481 DDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAIS 560 (670)
Q Consensus 481 ~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 560 (670)
.+...+ -.-+.|...|.+. ++.||+.|..++.++...+ .+.-.|.++.+..++.+++.+++..|-..+.
T Consensus 992 fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~ 1060 (1251)
T KOG0414|consen 992 FPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFK 1060 (1251)
T ss_pred cccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 665444 3556788889999 9999999999999997642 2234688999999999999999999998888
Q ss_pred HhcCCC
Q 037562 561 NATKFG 566 (670)
Q Consensus 561 ~l~~~~ 566 (670)
.++..+
T Consensus 1061 Els~k~ 1066 (1251)
T KOG0414|consen 1061 ELSSKG 1066 (1251)
T ss_pred Hhhhcc
Confidence 888875
No 203
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.36 E-value=0.00038 Score=70.09 Aligned_cols=82 Identities=13% Similarity=0.056 Sum_probs=39.2
Q ss_pred cccEEEeccCcCcc-----cccccccccCCCCcEEEEecCCCC------ccccCCCccccccceeeecccccccccccch
Q 037562 23 EVKISEAYNCYRLE-----NILIEESSVMNNLVILCVHCCDHL------INLVPSSTSFQNLTNLVVSHCKRLKIVLTSS 91 (670)
Q Consensus 23 ~L~~L~i~~c~~l~-----~~~~~~~~~~~~L~~L~i~~c~~l------~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~ 91 (670)
+|+.|.+.+|. ++ .++.. ....++|++|.++++.-- ..++.....+++|++|++++|.--... ..
T Consensus 24 ~L~~l~l~~~~-l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~ 99 (319)
T cd00116 24 CLQVLRLEGNT-LGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG--CG 99 (319)
T ss_pred hccEEeecCCC-CcHHHHHHHHHH-HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH--HH
Confidence 67777777764 21 11111 234556777766655311 111112223556777777766432211 11
Q ss_pred hhhcc---cccceecccccc
Q 037562 92 IAKTL---VRLRYMEIESCD 108 (670)
Q Consensus 92 ~~~~l---~~L~~L~i~~c~ 108 (670)
.+..+ ++|++|++++|.
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHHHhccCcccEEEeeCCc
Confidence 22222 337777776664
No 204
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.36 E-value=0.5 Score=43.27 Aligned_cols=139 Identities=9% Similarity=0.122 Sum_probs=99.2
Q ss_pred hHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhcc----CCchhHHHHHHHHHHHhhc-CCHHHHHHHHhcCChHHHHH
Q 037562 468 TPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVH----NHEESIKKEVSWIISNITC-GNREQIQAVIDSGLIGPIVN 542 (670)
Q Consensus 468 ~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~----~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ 542 (670)
.+|+..+-.++. .++....+.++.+--.+..+|.. .+.+-.|-.+.++++.+.. ++.+.+..+...+++|.+++
T Consensus 97 cnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLr 175 (293)
T KOG3036|consen 97 CNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLR 175 (293)
T ss_pred HHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHH
Confidence 345555555555 55666667777766666666643 3255689999999999988 46667778889999999999
Q ss_pred HhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHc--------CCc-HHHHhhccCCChHHHHHHHHHHHHHHHhh
Q 037562 543 LLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVRE--------GCV-KPLCDLLLCADPKIVTVCLEGLENILKVG 609 (670)
Q Consensus 543 ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~--------~~i-~~L~~ll~~~~~~v~~~a~~~l~~l~~~~ 609 (670)
.++.+++..+..|...+..+... +....++.+. -.+ ..+..+.+.+++.+.+.++++..++.++.
T Consensus 176 ime~GSelSKtvA~fIlqKIlld--D~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 176 IMESGSELSKTVATFILQKILLD--DVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHhcccHHHHHHHHHHHHHHhhc--cccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 99999999999999999999874 2333333321 112 23444557888999999999988876543
No 205
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.32 E-value=0.018 Score=46.68 Aligned_cols=70 Identities=19% Similarity=0.308 Sum_probs=57.9
Q ss_pred CcHHHHhhc-cCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHH
Q 037562 579 CVKPLCDLL-LCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657 (670)
Q Consensus 579 ~i~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l 657 (670)
++..|++++ ++.|+.+...|+.-|+.+++..+.. +..+.+.|+-+.+-.|++|+|++|+..|...+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g-------------r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~av 110 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG-------------RNIIEKLGAKERVMELMNHEDPEVRYEALLAV 110 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG-------------HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhH-------------HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHH
Confidence 477888888 5567888888899999999886653 56789999999999999999999999999999
Q ss_pred HHhc
Q 037562 658 ETYW 661 (670)
Q Consensus 658 ~~~~ 661 (670)
+++.
T Consensus 111 Qklm 114 (119)
T PF11698_consen 111 QKLM 114 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8874
No 206
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.30 E-value=0.016 Score=62.45 Aligned_cols=185 Identities=20% Similarity=0.195 Sum_probs=130.5
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh-------------hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 037562 284 PRFVEFLMRQDYPQLQFKAAWALTNIASGTS-------------ENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGN 350 (670)
Q Consensus 284 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~-------------~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 350 (670)
..++.+|++ +++-..|+.++.-+..+++ -+++.+. ..++|.+++.........+..-+.+|.+
T Consensus 818 ~klld~Ls~---~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~t~~~~~K~~yl~~Lsh 893 (1030)
T KOG1967|consen 818 EKLLDLLSG---PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFETAPGSQKHNYLEALSH 893 (1030)
T ss_pred HHHHHhcCC---ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhccCCccchhHHHHHHHH
Confidence 345555554 2334445555555544332 2333333 3678999998888788888889999999
Q ss_pred hhCCCchhHHHHHh-c-CChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCC---hhHH
Q 037562 351 VAGDSPRCRDLVLS-Q-GALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSND---EEVL 425 (670)
Q Consensus 351 l~~~~~~~~~~i~~-~-~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~---~~v~ 425 (670)
+..+-|. +.+.. . ..+|.|++.+ .-.|..++-.+..++.-+....+.-.......++|.+..+-.+.| ..||
T Consensus 894 Vl~~vP~--~vllp~~~~LlPLLLq~L-s~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR 970 (1030)
T KOG1967|consen 894 VLTNVPK--QVLLPQFPMLLPLLLQAL-SMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVR 970 (1030)
T ss_pred HHhcCCH--HhhccchhhHHHHHHHhc-CCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHH
Confidence 8876654 22222 1 2345555666 678889989999999888877766667777889999888877665 6799
Q ss_pred HHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHH
Q 037562 426 TDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIR 475 (670)
Q Consensus 426 ~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~ 475 (670)
..|+.++..+.+.-+...-......++..+.+.|+++.--+|.+|.++=.
T Consensus 971 ~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen 971 EDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred HHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence 99999999999844433333455588999999999998889999987643
No 207
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=96.27 E-value=0.18 Score=53.01 Aligned_cols=132 Identities=18% Similarity=0.215 Sum_probs=89.0
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhh
Q 037562 327 PIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQV 406 (670)
Q Consensus 327 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 406 (670)
..++...+ .+...+.-|+..+.....+-|..++. ++..++.++ .+.|..+|..|...|..+|.+.+ ..+
T Consensus 26 ~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLc-EDed~~iR~~aik~lp~~ck~~~----~~v 94 (556)
T PF05918_consen 26 KEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLC-EDEDVQIRKQAIKGLPQLCKDNP----EHV 94 (556)
T ss_dssp HHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHH-T-SSHHHHHHHHHHGGGG--T------T-H
T ss_pred HHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhHHHHHHhHH----HHH
Confidence 34555555 57889999999999999999987766 578899999 78889999999999999998753 345
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcC---CCCccchhHHHHHHHHh
Q 037562 407 RPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLG---HSSSSVLTPALRTIRNI 477 (670)
Q Consensus 407 ~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~---~~~~~v~~~a~~~L~~l 477 (670)
..+...|+++|+++++.....+=.+|..+...++. +.+..+...+. ++++.+|+.++..|..=
T Consensus 95 ~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~k 160 (556)
T PF05918_consen 95 SKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLREK 160 (556)
T ss_dssp HHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHHHH
Confidence 67888999999999877777777777666543332 22333444433 46677899988877433
No 208
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=96.24 E-value=0.0015 Score=66.65 Aligned_cols=63 Identities=14% Similarity=0.066 Sum_probs=30.6
Q ss_pred ccccccCCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhcccccceeccc
Q 037562 40 IEESSVMNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIE 105 (670)
Q Consensus 40 ~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~ 105 (670)
.+|.-.++.|+.|++++-. +..+..+ ....++|+.|+++.- .++.+ ++..+..|..|++|.++
T Consensus 286 ~g~lfgLt~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N-~i~~l-~~~sf~~L~~Le~LnLs 349 (873)
T KOG4194|consen 286 EGWLFGLTSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSN-RITRL-DEGSFRVLSQLEELNLS 349 (873)
T ss_pred cccccccchhhhhccchhh-hheeecchhhhcccceeEecccc-ccccC-ChhHHHHHHHhhhhccc
Confidence 3334456666777665532 3333222 234467777777643 33333 22333445555555554
No 209
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=96.21 E-value=0.0032 Score=55.89 Aligned_cols=131 Identities=18% Similarity=0.163 Sum_probs=46.7
Q ss_pred cCCCCcEEEEecCCCCccccCCCc-cccccceeeecccccccccccchhhhcccccceeccccccccceecccccccccc
Q 037562 45 VMNNLVILCVHCCDHLINLVPSST-SFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQD 123 (670)
Q Consensus 45 ~~~~L~~L~i~~c~~l~~~~~~~~-~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 123 (670)
....+++|++.++. +..+. ..+ .+.+|+.|+++++ .++.+ ..+..+++|++|++++=. ++++.. .
T Consensus 17 n~~~~~~L~L~~n~-I~~Ie-~L~~~l~~L~~L~Ls~N-~I~~l---~~l~~L~~L~~L~L~~N~-I~~i~~-------~ 82 (175)
T PF14580_consen 17 NPVKLRELNLRGNQ-ISTIE-NLGATLDKLEVLDLSNN-QITKL---EGLPGLPRLKTLDLSNNR-ISSISE-------G 82 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS---S-----TT----TT--EEE--SS----S-CH-------H
T ss_pred cccccccccccccc-ccccc-chhhhhcCCCEEECCCC-CCccc---cCccChhhhhhcccCCCC-CCcccc-------c
Confidence 34568889998874 43433 233 5789999999988 45555 456678999999886532 333210 0
Q ss_pred ccccccccccccccc--cccccccccCCcccCCCCccEEeEecCCCcccccc----CCcCCCCccceeeeeccCCc
Q 037562 124 EVITFRELKELNLLQ--MQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSG----GELSTPNLHKVQLSRWDGEE 193 (670)
Q Consensus 124 ~~~~~~~L~~L~l~~--~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~----~~~~~~~L~~l~i~~~~~~~ 193 (670)
-...||+|++|.+.+ ..++..+. ....+|+|+.|++.+.|--+ -+. -+..+|+|+.|+-..+....
T Consensus 83 l~~~lp~L~~L~L~~N~I~~l~~l~---~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~~V~~~E 154 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNNKISDLNELE---PLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQDVTEEE 154 (175)
T ss_dssp HHHH-TT--EEE-TTS---SCCCCG---GGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTEETTS-B
T ss_pred hHHhCCcCCEEECcCCcCCChHHhH---HHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCEEccHHH
Confidence 012489999999874 23443332 24568999999999887422 121 12347999999776666443
No 210
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=96.21 E-value=0.24 Score=45.26 Aligned_cols=138 Identities=13% Similarity=0.050 Sum_probs=103.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhc-----CChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhh
Q 037562 512 EVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQN-----TEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDL 586 (670)
Q Consensus 512 ~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~l 586 (670)
.|...+..++ ..++.+..++++.+--.+..++.. +.+..|..+.++++.+...++++...++...++++..++.
T Consensus 98 naL~LlQcvA-SHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLri 176 (293)
T KOG3036|consen 98 NALALLQCVA-SHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRI 176 (293)
T ss_pred HHHHHHHHHh-cCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHH
Confidence 3444444444 457778888998887777777763 3467899999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHH-----HHHhhcCCCHHHHHHHHHHHHHh
Q 037562 587 LLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEK-----IENLQSHDDNGISEKAVEILETY 660 (670)
Q Consensus 587 l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-----l~~L~~~~~~~v~~~a~~~l~~~ 660 (670)
++.++...+..|..++..|+-++.-..+ .++..++...+.. +.++.+.+++.+-+.+++...++
T Consensus 177 me~GSelSKtvA~fIlqKIlldD~GL~Y----------iCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrL 245 (293)
T KOG3036|consen 177 MESGSELSKTVATFILQKILLDDVGLYY----------ICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRL 245 (293)
T ss_pred HhcccHHHHHHHHHHHHHHhhccccHHH----------HHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999877654443 3555555544443 34556667777666655555444
No 211
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=96.19 E-value=0.057 Score=53.35 Aligned_cols=108 Identities=15% Similarity=0.156 Sum_probs=82.8
Q ss_pred HHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc-CCHHHHHHH
Q 037562 453 PRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC-GNREQIQAV 531 (670)
Q Consensus 453 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l 531 (670)
..+.+.+++.+..+|..|+.++|-++--+..... ..++.+...++.+ +..++..|+.++..+.. +........
T Consensus 30 ~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~~~~~ 103 (298)
T PF12719_consen 30 SLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDIFDSE 103 (298)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchhccch
Confidence 3455888999999999999999999876654333 3467788888777 99999999999999876 222222222
Q ss_pred H-------hcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCC
Q 037562 532 I-------DSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFG 566 (670)
Q Consensus 532 ~-------~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 566 (670)
. ...++..+.+.+.+.+++++..|+..++.+...+
T Consensus 104 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 104 SDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred hccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 2 2456778888888889999999999999998765
No 212
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.17 E-value=0.00063 Score=73.00 Aligned_cols=118 Identities=22% Similarity=0.257 Sum_probs=57.6
Q ss_pred ccccceeeecccccccccccchhhhcccccceeccccc-cccceeccccccccccccccccccccccccccccccccccC
Q 037562 70 FQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESC-DKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSG 148 (670)
Q Consensus 70 ~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c-~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 148 (670)
+++|+.|.+.+|..+......+.....++|+.|++.+| ....... ..........++|+.|.+..|..++.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSP----LLLLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccch----hHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence 56666777777766665221244556666777776664 2111110 000011223456666666666654443332
Q ss_pred CcccCCCCccEEeEecCCCcc--ccccCCcCCCCccceeeeeccC
Q 037562 149 NCAFTFPSLEILVVNYCPNMK--IFSGGELSTPNLHKVQLSRWDG 191 (670)
Q Consensus 149 ~~~~~~~~L~~L~i~~C~~l~--~~p~~~~~~~~L~~l~i~~~~~ 191 (670)
.....+|+|+.|.+.+|+.++ .+-.....+|+|++|+++.+..
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 122235666666666666543 1111122356666666654443
No 213
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.13 E-value=0.43 Score=50.62 Aligned_cols=192 Identities=11% Similarity=0.168 Sum_probs=134.8
Q ss_pred hhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchh
Q 037562 405 QVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQ 484 (670)
Q Consensus 405 ~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 484 (670)
...+++|.+++++...|..+|...+.-+-..... ..+..++..+++.+..-+.+.++.+|+.++.++..++..-...
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~ 403 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR 403 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence 4578999999999999999997777766665544 3344677789999999999999999999999999887532111
Q ss_pred hHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCC-hHHHHHHhhcCChhHHHHHHHHHHHhc
Q 037562 485 TQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGL-IGPIVNLLQNTEFDTKKEAAWAISNAT 563 (670)
Q Consensus 485 ~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~-i~~L~~ll~~~~~~v~~~a~~aL~~l~ 563 (670)
......+..+...-.+. +..+|....-+++.++...... ...++ ...+.+.++++-...|..+.+++..-.
T Consensus 404 ---~Ln~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~~~----~R~~vL~~aftralkdpf~paR~a~v~~l~at~ 475 (690)
T KOG1243|consen 404 ---NLNGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLAAS----VRKRVLASAFTRALKDPFVPARKAGVLALAATQ 475 (690)
T ss_pred ---hhcHHHHHHHHhhCccc-cCcccccceeeecccccccchh----hhccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence 22223344444444434 7788888888888886542221 12232 345555666676788888888887766
Q ss_pred CCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhh
Q 037562 564 KFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVA 611 (670)
Q Consensus 564 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~ 611 (670)
..-+... +...+++.++-+.-+++..++..+..++...+...++
T Consensus 476 ~~~~~~~----va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~ 519 (690)
T KOG1243|consen 476 EYFDQSE----VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEK 519 (690)
T ss_pred cccchhh----hhhhccccccccccCcccchhhHHHHHHHHHHhhhhh
Confidence 5322111 3445888888899999999999999998887765444
No 214
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=96.10 E-value=2.4 Score=44.88 Aligned_cols=285 Identities=14% Similarity=0.106 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHh
Q 037562 253 SLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKL 332 (670)
Q Consensus 253 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~l 332 (670)
..+..|+..++.....-+-..+..+ ....-.++......++|..+...+..+..+....-. ... ..+...
T Consensus 5 ~~R~~a~~~l~~~i~~~~~~~i~~i-----W~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~-~~R----~~fF~~ 74 (464)
T PF11864_consen 5 SERIKAAEELCESIQKYPLSSIEEI-----WYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSG-LMR----AEFFRD 74 (464)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHH-----HHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH-HHH----HHHHHH
Confidence 4456666666666554322222221 112234555554468899998888888874433111 111 112222
Q ss_pred hC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccC--------------------------ChhHHH
Q 037562 333 LA-SPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENA--------------------------NLSMLR 385 (670)
Q Consensus 333 L~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~--------------------------~~~~~~ 385 (670)
+. ...++.-..-+.+|..|+.+.... ..++.+..+.+...+...- +.....
T Consensus 75 I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (464)
T PF11864_consen 75 ISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLS 152 (464)
T ss_pred HhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHH
Confidence 22 233333344555666666554433 1235555666665552110 122233
Q ss_pred HHHHHHHhhhcCCC-CCChhhhhhhHHHHHHhhc-cCChhHHHHHHHHHHHhccC---ChHHHHHHHHcCCHHHHHHhcC
Q 037562 386 TATWTLFNFCRGKP-QPPFNQVRPALPVLAQLIR-SNDEEVLTDACWALSYLSDG---TNDKVQAVIEAGVYPRLVELLG 460 (670)
Q Consensus 386 ~a~~~L~~l~~~~~-~~~~~~~~~~i~~L~~lL~-~~~~~v~~~al~~L~~l~~~---~~~~~~~~~~~~~i~~L~~lL~ 460 (670)
.....+.|+...+. ......+.+.+..+..+-. +.++.....++..+-.+... +++... .++..|....
T Consensus 153 ~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-----~~i~vLCsi~- 226 (464)
T PF11864_consen 153 DLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-----PCIEVLCSIV- 226 (464)
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-----HHHHHHhhHh-
Confidence 44445555555442 2233444555555555533 23333444445444443321 111111 1222333332
Q ss_pred CCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhc--cC---CchhHHHHHHHHHHHhhcCCHHHHH-HHHhc
Q 037562 461 HSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLV--HN---HEESIKKEVSWIISNITCGNREQIQ-AVIDS 534 (670)
Q Consensus 461 ~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~--~~---~~~~v~~~a~~~L~~l~~~~~~~~~-~l~~~ 534 (670)
+..+....+-.++.||+...-.. ..+..|..+|. +. .+..+.+.|+..+..+..+..+... .+--.
T Consensus 227 -~~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~ 298 (464)
T PF11864_consen 227 -NSVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFS 298 (464)
T ss_pred -cccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceeccc
Confidence 23367788888999998643221 13566777773 21 1556677899999998775422211 11112
Q ss_pred --CChHHHHHHhhcCChhHHHHHHHHHHHhc
Q 037562 535 --GLIGPIVNLLQNTEFDTKKEAAWAISNAT 563 (670)
Q Consensus 535 --~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 563 (670)
-+++.+...++.++..+-.++...+.++.
T Consensus 299 ~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 299 PSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred HHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 26888888888888777777777777777
No 215
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.08 E-value=0.13 Score=47.96 Aligned_cols=194 Identities=12% Similarity=0.057 Sum_probs=121.1
Q ss_pred CccchhHHHHHHHHhhcCCchhhHHHHhC-CChHHHHHhh-------ccCC-chhHHH---HHHHHHHHhhcCCHHHHHH
Q 037562 463 SSSVLTPALRTIRNIVKGDDFQTQCIINC-GALPYFLDML-------VHNH-EESIKK---EVSWIISNITCGNREQIQA 530 (670)
Q Consensus 463 ~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-~~~~~L~~~l-------~~~~-~~~v~~---~a~~~L~~l~~~~~~~~~~ 530 (670)
+++.|+.|+.-|+.--...++....+... |.+..|++=+ ..+. +...-. .|...+..+++ .++.+..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence 34456666666665544444444444433 4444443332 1110 121122 23333444444 5888889
Q ss_pred HHhcCChHHHHHHhhcCC-----hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHH
Q 037562 531 VIDSGLIGPIVNLLQNTE-----FDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENI 605 (670)
Q Consensus 531 l~~~~~i~~L~~ll~~~~-----~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l 605 (670)
++++++.-.|..++...+ +.+|-.+.++++.+...++++...++.+.++++...+.++.++.-.+..|..++.++
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKI 166 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKI 166 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 999999888888887432 578999999999999998999999999999999999999999998999999999999
Q ss_pred HHhhhhhhccCCCCCCccHHHHHHHHhchHHH-HHHhhcCCCHHHHHHHHHHHHHhcCC
Q 037562 606 LKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEK-IENLQSHDDNGISEKAVEILETYWSS 663 (670)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-l~~L~~~~~~~v~~~a~~~l~~~~~~ 663 (670)
+.++......+.. ..+| ..-...+.. +..+....++.+-+.......++.+.
T Consensus 167 L~dd~GL~yiC~t---~eRf---~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn 219 (262)
T PF04078_consen 167 LLDDVGLNYICQT---AERF---FAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN 219 (262)
T ss_dssp HHSHHHHHHHTSS---HHHH---HHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS
T ss_pred HcchhHHHHHhcC---HHHH---HHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccC
Confidence 9887776665542 2222 222222333 45667777888777666665555443
No 216
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=96.03 E-value=0.32 Score=48.89 Aligned_cols=176 Identities=12% Similarity=0.144 Sum_probs=113.4
Q ss_pred CHHHHHHHHHHHHH-hhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHH
Q 037562 337 SVDVRKQTVWALGN-VAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQ 415 (670)
Q Consensus 337 ~~~v~~~a~~~L~~-l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~ 415 (670)
..+-+..|+.-|.. ++.++...=+..+. ..+..+++.+.++.+...+..|+.+|..++...+..-+....-++..++.
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~-~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Le 378 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFA-EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLE 378 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHH-HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHH
Confidence 34455566654443 34333221111111 13566778886668888899999999999998766655555666666666
Q ss_pred hhccCChhHHHHHHH-HHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCCh
Q 037562 416 LIRSNDEEVLTDACW-ALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGAL 494 (670)
Q Consensus 416 lL~~~~~~v~~~al~-~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~ 494 (670)
.-.+.++++...|.. |+..++.+.+.. -+..+..++.+.|......++..+..+...-+...-..+-..+.
T Consensus 379 aa~ds~~~v~~~Aeed~~~~las~~P~~--------~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~dia 450 (516)
T KOG2956|consen 379 AAKDSQDEVMRVAEEDCLTTLASHLPLQ--------CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIA 450 (516)
T ss_pred HHhCCchhHHHHHHHHHHHHHHhhCchh--------HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhh
Confidence 666666665555554 444455554432 23445566666777777777778888876443222222335789
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHHhhc
Q 037562 495 PYFLDMLVHNHEESIKKEVSWIISNITC 522 (670)
Q Consensus 495 ~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 522 (670)
|.+++...+. +..||+.|+++|..+..
T Consensus 451 P~~iqay~S~-SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 451 PCVIQAYDST-SSTVRKTAVFCLVAMVN 477 (516)
T ss_pred hHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence 9999999999 99999999999988854
No 217
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.01 E-value=0.0078 Score=48.70 Aligned_cols=71 Identities=15% Similarity=0.250 Sum_probs=60.2
Q ss_pred ChHHHHHHhh-cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHH
Q 037562 536 LIGPIVNLLQ-NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILK 607 (670)
Q Consensus 536 ~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~ 607 (670)
++..|+++|. +.|+.+...||.-|+.++.. .|..+..+-+.|+-..+++++.++|++|+..|+.++..++.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~-~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRH-YPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH--GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHH-ChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 5788899994 56888999999999999997 56777777788999999999999999999999999999874
No 218
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.00 E-value=0.66 Score=47.18 Aligned_cols=192 Identities=11% Similarity=0.108 Sum_probs=116.4
Q ss_pred HHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHh-cCChHHHHHHhccc
Q 037562 301 KAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDS-PRCRDLVLS-QGALIPLLAELNEN 378 (670)
Q Consensus 301 ~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~-~~~i~~Ll~~l~~~ 378 (670)
.|++.|-.+....+.....+.+.+++..+++.++.+-....+. .-...-.... ++.+..... .. + ..
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-i--------~~ 71 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NKNEEAGSGIPPEYKESSVDGYS-I--------SY 71 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--ccccCCCCCCCCCcccccccccc-c--------CH
Confidence 4677777777767777888899999999999886422111110 0000000110 010000000 00 0 00
Q ss_pred CChhHHHHHHHHHHhhhc-CCCC--C-Chhhh-hhhHHHHHHhhccC---ChhHHHHHHHHHHHhccCChHHHHHHHHcC
Q 037562 379 ANLSMLRTATWTLFNFCR-GKPQ--P-PFNQV-RPALPVLAQLIRSN---DEEVLTDACWALSYLSDGTNDKVQAVIEAG 450 (670)
Q Consensus 379 ~~~~~~~~a~~~L~~l~~-~~~~--~-~~~~~-~~~i~~L~~lL~~~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~~ 450 (670)
....+.+..+.++..+.. .... . +-... ......|...+++. .+.+...|+.++..+..+.+.....+.+.|
T Consensus 72 ~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~G 151 (379)
T PF06025_consen 72 QRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAG 151 (379)
T ss_pred HHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcC
Confidence 011233344444444444 2211 1 11222 34556666777655 478999999999999999998889999999
Q ss_pred CHHHHHHhcC-CC---CccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccC
Q 037562 451 VYPRLVELLG-HS---SSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHN 504 (670)
Q Consensus 451 ~i~~L~~lL~-~~---~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~ 504 (670)
+++.++..+. .+ +.++....-.+++.+|- +....+.+.+.+.++.+++++.+.
T Consensus 152 l~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~ 208 (379)
T PF06025_consen 152 LIDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSP 208 (379)
T ss_pred ChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCH
Confidence 9999999988 42 34455555677777777 445567788889999999998765
No 219
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.87 E-value=2.8 Score=46.72 Aligned_cols=206 Identities=17% Similarity=0.212 Sum_probs=122.7
Q ss_pred hCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc---ccCC----hhHHHHHHH
Q 037562 322 DHGAVPIFVKLLAS-----PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELN---ENAN----LSMLRTATW 389 (670)
Q Consensus 322 ~~~~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~---~~~~----~~~~~~a~~ 389 (670)
+.|++..++.++.+ .........+..|...+. -+.+|+.+++.|+++.|+..+. .... ..+....+.
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~ 193 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE 193 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence 46889999998875 234555566666666554 4678999999999999998874 2222 345454444
Q ss_pred HHHhhhcCCCCCChh-------------hhhhhHHHHHHhhcc----CChhHHHHHHHHHHHhccCChHHHHHHHHcCCH
Q 037562 390 TLFNFCRGKPQPPFN-------------QVRPALPVLAQLIRS----NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVY 452 (670)
Q Consensus 390 ~L~~l~~~~~~~~~~-------------~~~~~i~~L~~lL~~----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i 452 (670)
++-.+.......... ....-+..++..+.+ .++.+....+++|.+++.+.++..+.+++
T Consensus 194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~---- 269 (802)
T PF13764_consen 194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE---- 269 (802)
T ss_pred HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH----
Confidence 444443322111000 012335556666654 36889999999999999998888776665
Q ss_pred HHHHHhcCC---C--CccchhHHHHHHHHhhcCCc------hhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhh
Q 037562 453 PRLVELLGH---S--SSSVLTPALRTIRNIVKGDD------FQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNIT 521 (670)
Q Consensus 453 ~~L~~lL~~---~--~~~v~~~a~~~L~~l~~~~~------~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~ 521 (670)
.+-+.++- + ...--...+.+++.++.+-+ .....+++.|++...++.+... -|.. .
T Consensus 270 -~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~-~P~~-----------~ 336 (802)
T PF13764_consen 270 -HFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH-FPSL-----------K 336 (802)
T ss_pred -HHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh-Cccc-----------c
Confidence 22333221 1 11111233556666654322 2355667888888888887665 3333 1
Q ss_pred cCCHHHHHHHHhcCChHHHHHHhh
Q 037562 522 CGNREQIQAVIDSGLIGPIVNLLQ 545 (670)
Q Consensus 522 ~~~~~~~~~l~~~~~i~~L~~ll~ 545 (670)
....+....+++...+|..+++|.
T Consensus 337 ~~~s~eWk~~l~~psLp~iL~lL~ 360 (802)
T PF13764_consen 337 NTDSPEWKEFLSRPSLPYILRLLR 360 (802)
T ss_pred cCCCHHHHHHhcCCcHHHHHHHHH
Confidence 113444556666677777777765
No 220
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=95.77 E-value=1.4 Score=42.19 Aligned_cols=203 Identities=10% Similarity=0.068 Sum_probs=142.5
Q ss_pred HHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhh------hhhHHHHHHhhccCChhHHHHHHHHHH
Q 037562 360 DLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQV------RPALPVLAQLIRSNDEEVLTDACWALS 433 (670)
Q Consensus 360 ~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~------~~~i~~L~~lL~~~~~~v~~~al~~L~ 433 (670)
..+.+.|.+..++..+ ...+-+.+..++.+..++-+.......... ...+..++.--.. .+++...+-..+.
T Consensus 73 qef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr 150 (342)
T KOG1566|consen 73 QEFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR 150 (342)
T ss_pred HHHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence 3466778888999988 777778889999999998877633322222 2344444444111 2455544444455
Q ss_pred HhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCC----hHHHHHhhccCCchhH
Q 037562 434 YLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGA----LPYFLDMLVHNHEESI 509 (670)
Q Consensus 434 ~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~----~~~L~~~l~~~~~~~v 509 (670)
....+ +.....+..+.-+......++.++-++...|..+...+.......+..++..+. .+..-.++.++ +.-.
T Consensus 151 Ecirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyvt 228 (342)
T KOG1566|consen 151 ECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYVT 228 (342)
T ss_pred HHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-ceeh
Confidence 54433 445666777788888889999999899999999998887766655555654433 34466677777 9999
Q ss_pred HHHHHHHHHHhhcC--C-HHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCC
Q 037562 510 KKEVSWIISNITCG--N-REQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFG 566 (670)
Q Consensus 510 ~~~a~~~L~~l~~~--~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 566 (670)
+..+...++.+..+ + ....+++.+..-+..++.+|+++...+|.+|-....-+..+.
T Consensus 229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp 288 (342)
T KOG1566|consen 229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP 288 (342)
T ss_pred HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence 99999999998763 2 233444445567889999999999999999999888877653
No 221
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.75 E-value=0.0026 Score=56.13 Aligned_cols=65 Identities=15% Similarity=0.170 Sum_probs=28.4
Q ss_pred cCCCCcEEEEecCCCCcccc--CCCccccccceeeecccccccccccchhhhcccccceecccccccc
Q 037562 45 VMNNLVILCVHCCDHLINLV--PSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKI 110 (670)
Q Consensus 45 ~~~~L~~L~i~~c~~l~~~~--~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l 110 (670)
.++.++.|.+.+|..+..+- .-.+.+|+|+.|+|++|+.+++- ...++..+++|+.|.|++.+.+
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhh
Confidence 34455555555555443321 11123445555555555555442 1123344445555544444433
No 222
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.0045 Score=61.11 Aligned_cols=153 Identities=17% Similarity=0.181 Sum_probs=89.9
Q ss_pred ccccEEEeccCcCccccccc-ccccCCCCcEEEEecCCCC-ccccCCCccccccceeeecccccc-cccccchhhhcccc
Q 037562 22 MEVKISEAYNCYRLENILIE-ESSVMNNLVILCVHCCDHL-INLVPSSTSFQNLTNLVVSHCKRL-KIVLTSSIAKTLVR 98 (670)
Q Consensus 22 ~~L~~L~i~~c~~l~~~~~~-~~~~~~~L~~L~i~~c~~l-~~~~~~~~~~~~L~~L~i~~c~~l-~~l~~~~~~~~l~~ 98 (670)
.+|+.|.++.-. |.....+ ....++.|+.|.+++|.-- +.+......||+|+.|.+.+-..+ ... .....+..
T Consensus 172 p~Le~LNls~Nr-l~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~---~~~~i~~~ 247 (505)
T KOG3207|consen 172 PSLENLNLSSNR-LSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKA---TSTKILQT 247 (505)
T ss_pred ccchhccccccc-ccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceec---chhhhhhH
Confidence 388888877532 2211111 1135789999999999722 233344456899999999876422 222 12335678
Q ss_pred cceeccccccccceecccccccccccccccccccccccccc--ccccccccC--CcccCCCCccEEeEecCCCcccccc-
Q 037562 99 LRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQM--QNLISFCSG--NCAFTFPSLEILVVNYCPNMKIFSG- 173 (670)
Q Consensus 99 L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~~~--~~~~~~~~L~~L~i~~C~~l~~~p~- 173 (670)
|++|++++-..+..- .......||.|+-|.+..+ +.+.....+ ..-..||+|+.|.|..=+ +..++.
T Consensus 248 L~~LdLs~N~li~~~-------~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl 319 (505)
T KOG3207|consen 248 LQELDLSNNNLIDFD-------QGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSL 319 (505)
T ss_pred HhhccccCCcccccc-------cccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc-ccccccc
Confidence 899999876644211 0112346888888888764 444433221 113578999999987643 333332
Q ss_pred -CCcCCCCccceee
Q 037562 174 -GELSTPNLHKVQL 186 (670)
Q Consensus 174 -~~~~~~~L~~l~i 186 (670)
....+++|++|.+
T Consensus 320 ~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 320 NHLRTLENLKHLRI 333 (505)
T ss_pred chhhccchhhhhhc
Confidence 2234677787753
No 223
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=95.66 E-value=0.0011 Score=56.45 Aligned_cols=128 Identities=20% Similarity=0.258 Sum_probs=81.1
Q ss_pred CCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceecccccccccccc
Q 037562 46 MNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEV 125 (670)
Q Consensus 46 ~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~ 125 (670)
+.+...|.++.- ++..+|+.+..+.+|+.|.+++- .++.+ +....++|.|+.|.+. +..+..++. ..
T Consensus 32 ~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nn-qie~l--p~~issl~klr~lnvg-mnrl~~lpr--------gf 98 (264)
T KOG0617|consen 32 MSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNN-QIEEL--PTSISSLPKLRILNVG-MNRLNILPR--------GF 98 (264)
T ss_pred hhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccc-hhhhc--Chhhhhchhhhheecc-hhhhhcCcc--------cc
Confidence 345555666543 56777887777888888887764 45555 3456678888888774 333433321 22
Q ss_pred ccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCccceeeee
Q 037562 126 ITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSR 188 (670)
Q Consensus 126 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~ 188 (670)
..||.|+.|++.. .+|..-...+..+-+..|+.|++.+- ..+.+|..+..+++|+.|.+++
T Consensus 99 gs~p~levldlty-nnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrd 159 (264)
T KOG0617|consen 99 GSFPALEVLDLTY-NNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRD 159 (264)
T ss_pred CCCchhhhhhccc-cccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeecc
Confidence 4588888888764 23333333334556677777887763 4677888877778888776644
No 224
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=95.64 E-value=0.66 Score=46.75 Aligned_cols=173 Identities=12% Similarity=0.121 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHhhhcCCCCCChh-hhhhhHHHHHHhhcc-CChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhc
Q 037562 382 SMLRTATWTLFNFCRGKPQPPFN-QVRPALPVLAQLIRS-NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELL 459 (670)
Q Consensus 382 ~~~~~a~~~L~~l~~~~~~~~~~-~~~~~i~~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL 459 (670)
+-+..|..-|..+.......... ....++..++..|.+ .++..+..|++.|..++.+.+.....-.+ -++..++..-
T Consensus 302 ~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE-~ai~K~Leaa 380 (516)
T KOG2956|consen 302 SERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTE-IAICKVLEAA 380 (516)
T ss_pred hHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHH-HHHHHHHHHH
Confidence 44445555444444333233222 124566677788877 67889999999999999876654332222 2334444444
Q ss_pred CCCCccchhHHHH-HHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcC-CHHHHHHHHhcCCh
Q 037562 460 GHSSSSVLTPALR-TIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCG-NREQIQAVIDSGLI 537 (670)
Q Consensus 460 ~~~~~~v~~~a~~-~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i 537 (670)
.+.++.+...|.. ++.-++.+.+... +..+..++... |......+...+..++.. ..+....++ .++.
T Consensus 381 ~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e~l~~EeL~~ll-~dia 450 (516)
T KOG2956|consen 381 KDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTA-DEPRAVAVIKMLTKLFERLSAEELLNLL-PDIA 450 (516)
T ss_pred hCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcC-cchHHHHHHHHHHHHHhhcCHHHHHHhh-hhhh
Confidence 4555555544444 4455555444332 22333444445 555555566666666653 223222222 4689
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHhcCC
Q 037562 538 GPIVNLLQNTEFDTKKEAAWAISNATKF 565 (670)
Q Consensus 538 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 565 (670)
|.+++..++.+..||+.|+++|..+...
T Consensus 451 P~~iqay~S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 451 PCVIQAYDSTSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred hHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence 9999999999999999999999888653
No 225
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=1.8 Score=46.27 Aligned_cols=298 Identities=17% Similarity=0.124 Sum_probs=162.8
Q ss_pred HHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC-------CCHHHHHHHHHHHHHHcC--CChhhHHHHHhCCCh
Q 037562 256 LEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQ-------DYPQLQFKAAWALTNIAS--GTSENTKVVIDHGAV 326 (670)
Q Consensus 256 ~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~-------~~~~v~~~a~~~L~~l~~--~~~~~~~~i~~~~~i 326 (670)
..|+..+..+.+.... ---.|+++.++..+... +++.-.+-|.+.++++.. ..+....-+++.-++
T Consensus 388 laal~fl~~~~sKrke-----~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv 462 (970)
T COG5656 388 LAALFFLIISKSKRKE-----ETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIV 462 (970)
T ss_pred HHHHHHHHHHhcccch-----hhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence 4455555555444211 11246788888888321 235556677777777665 333334444444556
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCC--hh
Q 037562 327 PIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPP--FN 404 (670)
Q Consensus 327 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~--~~ 404 (670)
+.++..++++..-++..|+..+..+..+-+ +...-..+.+...+.+ ++.+-.++..|+-++..+..+..... ..
T Consensus 463 ~hv~P~f~s~ygfL~Srace~is~~eeDfk---d~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~q~h~k~sa 538 (970)
T COG5656 463 NHVIPAFRSNYGFLKSRACEFISTIEEDFK---DNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNEQSHEKFSA 538 (970)
T ss_pred HHhhHhhcCcccchHHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhchhhhHHHHh
Confidence 677777888889999999999999954332 2222333566677777 44777888899999998887762221 11
Q ss_pred hhhhhHHHHHHhhccCChhHHHHHHHHHH-Hhcc----CChHHHHHHHHcCCHHHHHHhcCCCC------ccchhHHHHH
Q 037562 405 QVRPALPVLAQLIRSNDEEVLTDACWALS-YLSD----GTNDKVQAVIEAGVYPRLVELLGHSS------SSVLTPALRT 473 (670)
Q Consensus 405 ~~~~~i~~L~~lL~~~~~~v~~~al~~L~-~l~~----~~~~~~~~~~~~~~i~~L~~lL~~~~------~~v~~~a~~~ 473 (670)
.+.+.++.|+.+-+.-+.++...++..+. ..+. ..++....+.+ .++.....++.+++ .+-+..|.++
T Consensus 539 hVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~-qFlkiaq~l~ens~d~~s~vDDKqmaasGi 617 (970)
T COG5656 539 HVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVR-QFLKIAQSLLENSSDTSSVVDDKQMAASGI 617 (970)
T ss_pred hhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHH-HHHHHHHHHHcCCccccccccHHHHHHHHH
Confidence 22344444544444444444444444332 1221 11122221221 23334444444431 1223445555
Q ss_pred HHHhhc-----CC-chhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcC
Q 037562 474 IRNIVK-----GD-DFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNT 547 (670)
Q Consensus 474 L~~l~~-----~~-~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~ 547 (670)
|..+.. .+ +...+ -.+....|.+--.+++. -.++-.+|+..+-+.+....+.- -+.-|+.+.+.+++.+.
T Consensus 618 L~T~~smiLSlen~p~vLk-~le~slypvi~Filkn~-i~dfy~Ea~dildg~tf~skeI~--pimwgi~Ell~~~l~~~ 693 (970)
T COG5656 618 LRTIESMILSLENRPLVLK-YLEVSLYPVISFILKNE-ISDFYQEALDILDGYTFMSKEIE--PIMWGIFELLLNLLIDE 693 (970)
T ss_pred HHHHHHHHHhcccchHHHH-HHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHHhh--hhhhHHHHHHHhccccc
Confidence 544432 11 11111 22345566666667777 67777788888777654322211 11224555555666555
Q ss_pred Ch-hHHHHHHHHHHHhcCCCC
Q 037562 548 EF-DTKKEAAWAISNATKFGT 567 (670)
Q Consensus 548 ~~-~v~~~a~~aL~~l~~~~~ 567 (670)
.. .....+.-++.|+...|.
T Consensus 694 ~t~~y~ee~~~al~nfityG~ 714 (970)
T COG5656 694 ITAVYSEEVADALDNFITYGK 714 (970)
T ss_pred chhhhHHHHHHHHHHHHHhCc
Confidence 53 677889999999987653
No 226
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.55 E-value=0.29 Score=46.03 Aligned_cols=103 Identities=24% Similarity=0.255 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhc-cCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHH
Q 037562 551 TKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLL-LCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLV 629 (670)
Q Consensus 551 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 629 (670)
....|...|.-++.- .|.....+-+...++.|++++ ....+.++.+++.++..++-+.... ...|
T Consensus 107 li~~aL~vLQGl~LL-Hp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N-------------~r~F 172 (257)
T PF08045_consen 107 LIALALRVLQGLCLL-HPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPEN-------------QRDF 172 (257)
T ss_pred HHHHHHHHHHHHHHc-CchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHH-------------HHHH
Confidence 455667777777766 567777888999999999999 4567889999999999888765542 4589
Q ss_pred HHhchHHHHHHhhc--CCCHHHHHHHHHHHHHhcCCcccc
Q 037562 630 EEAEGLEKIENLQS--HDDNGISEKAVEILETYWSSRVIG 667 (670)
Q Consensus 630 ~~~g~~~~l~~L~~--~~~~~v~~~a~~~l~~~~~~~~~~ 667 (670)
++.+|+..+..+.. +.+.+++-+....+--|+.++...
T Consensus 173 E~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~~ 212 (257)
T PF08045_consen 173 EELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETPS 212 (257)
T ss_pred HHhCCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCCC
Confidence 99999999988854 457789999999999888766554
No 227
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.44 E-value=0.091 Score=46.03 Aligned_cols=144 Identities=16% Similarity=0.172 Sum_probs=97.8
Q ss_pred HHHHhhc--cCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHH
Q 037562 412 VLAQLIR--SNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCII 489 (670)
Q Consensus 412 ~L~~lL~--~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~ 489 (670)
.++..+. ...++++..+.-++..+.+. ...-....+-..+...+..++.+-...++.++..+-...++....++
T Consensus 7 ~lL~~L~~~~~~~~~r~~a~v~l~k~l~~----~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~ 82 (157)
T PF11701_consen 7 TLLTSLDMLRQPEEVRSHALVILSKLLDA----AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELF 82 (157)
T ss_dssp HHHHHHHCTTTSCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHC
T ss_pred HHHHHhcccCCCHhHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHH
Confidence 3444443 35678898888888887422 22222223335566666666666788888899988888777766666
Q ss_pred -hCCChHHHHHhhc--cCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh-cCChh-HHHHHHHHHHHh
Q 037562 490 -NCGALPYFLDMLV--HNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ-NTEFD-TKKEAAWAISNA 562 (670)
Q Consensus 490 -~~~~~~~L~~~l~--~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~-v~~~a~~aL~~l 562 (670)
..|+.+.+..++. .. +..++..++.++..-|. .+.....+...+++.|.+.++ +++.. +|..|+-+|+.+
T Consensus 83 ~~eg~~~~l~~~~~~~~~-~~~~~~~~lell~aAc~--d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 83 LSEGFLESLLPLASRKSK-DRKVQKAALELLSAACI--DKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp CTTTHHHHHHHHHH-CTS--HHHHHHHHHHHHHHTT--SHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 6788899999988 55 78888888888877755 333444455568899999986 45555 888888887753
No 228
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.37 E-value=0.75 Score=48.76 Aligned_cols=107 Identities=15% Similarity=0.126 Sum_probs=78.9
Q ss_pred HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 037562 279 QSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC 358 (670)
Q Consensus 279 ~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 358 (670)
-.|.+..+++...+.+ ..||..++..|..+.. ....++.-+-.+....+..-+.+..+.||.+|+.+|+.+=.+..+-
T Consensus 83 V~~~f~hlLRg~Eskd-k~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 83 VAGTFYHLLRGTESKD-KKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred HHHHHHHHHhcccCcc-hhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence 3456777777778888 7999999999999987 3333333333466777777788888999999999999996432211
Q ss_pred HHHHHhcCChHHHHHHhcccCChhHHHHHHHHHH
Q 037562 359 RDLVLSQGALIPLLAELNENANLSMLRTATWTLF 392 (670)
Q Consensus 359 ~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~ 392 (670)
+..++..+..+++++++++|++.|+..+.
T Consensus 161 -----e~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 161 -----ECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred -----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 23357788889989999999998765544
No 229
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.34 E-value=0.1 Score=45.73 Aligned_cols=143 Identities=15% Similarity=0.141 Sum_probs=98.3
Q ss_pred HHHHHhcC--CCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHH
Q 037562 453 PRLVELLG--HSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQA 530 (670)
Q Consensus 453 ~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 530 (670)
..++..+. ...+++|..|.-++..+-. . .+.-....+-+.+-..+... +.+-...+..++..+-.+.++....
T Consensus 6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l~---~-~~~~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 6 DTLLTSLDMLRQPEEVRSHALVILSKLLD---A-AREEFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CHHHHHHHCTTTSCCHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHhcccCCCHhHHHHHHHHHHHHHH---H-hHHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHH
Confidence 34444444 3566799999999988842 1 22222223444555556555 6667778888999988888887777
Q ss_pred HH-hcCChHHHHHHhh--cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhcc-CCChH-HHHHHHHHHH
Q 037562 531 VI-DSGLIGPIVNLLQ--NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLL-CADPK-IVTVCLEGLE 603 (670)
Q Consensus 531 l~-~~~~i~~L~~ll~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~-v~~~a~~~l~ 603 (670)
+. ..|+++.++.+.. .++..++..++.+|..-+. +... ...+...+++.|.++++ ++++. ++..|+-+|.
T Consensus 81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~--d~~~-r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI--DKSC-RTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT--SHHH-HHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc--cHHH-HHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 76 6788999999998 7788999999999988776 4444 44455568999999995 45555 6777666554
No 230
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.33 E-value=0.15 Score=37.47 Aligned_cols=66 Identities=20% Similarity=0.287 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh-cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcC
Q 037562 510 KKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ-NTEFDTKKEAAWAISNATKFGTHEQIKHLVREG 578 (670)
Q Consensus 510 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~ 578 (670)
.+.|.|++++++. ++.-...+.+.++++.++++.+ ++...+|-.|.++|+-++. +.+..+.+.+.|
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence 5789999999976 4556666777899999999988 5567999999999999998 667777766654
No 231
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.17 E-value=4.7 Score=47.27 Aligned_cols=93 Identities=9% Similarity=0.076 Sum_probs=62.0
Q ss_pred chhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh
Q 037562 466 VLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ 545 (670)
Q Consensus 466 v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~ 545 (670)
++...-..|..+-...+.. -.+++|.|-.-|.+. +..+|..|...++.+......... =-........+.-+.
T Consensus 238 ~~~~~he~i~~L~~~~p~l-----l~~vip~l~~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~ 310 (1266)
T KOG1525|consen 238 LKIKYHELILELWRIAPQL-----LLAVIPQLEFELLSE-QEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFN 310 (1266)
T ss_pred hhhHHHHHHHHHHHhhHHH-----HHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhc
Confidence 3444444454444433222 137899999999999 999999999999999764332221 001224555566666
Q ss_pred cCChhHHHHHHHHHHHhcCC
Q 037562 546 NTEFDTKKEAAWAISNATKF 565 (670)
Q Consensus 546 ~~~~~v~~~a~~aL~~l~~~ 565 (670)
+.+.+||..++....++...
T Consensus 311 D~~~~vR~~~v~~~~~~l~~ 330 (1266)
T KOG1525|consen 311 DISVEVRMECVESIKQCLLN 330 (1266)
T ss_pred cCChhhhhhHHHHhHHHHhc
Confidence 78899999999998888775
No 232
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.10 E-value=0.39 Score=45.19 Aligned_cols=100 Identities=11% Similarity=0.079 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh-cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhc
Q 037562 509 IKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ-NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLL 587 (670)
Q Consensus 509 v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll 587 (670)
....|...|.-++--.+..+..+.+...+..+++++. ...+.++..++.+|..+... ++.+.+.|-+.+|+..++.++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld-~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLD-SPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHc-ChHHHHHHHHhCCHHHHHHHH
Confidence 3445667777777766777888889999999999995 56789999999999998887 778888999999999999999
Q ss_pred cCC--ChHHHHHHHHHHHHHHHhh
Q 037562 588 LCA--DPKIVTVCLEGLENILKVG 609 (670)
Q Consensus 588 ~~~--~~~v~~~a~~~l~~l~~~~ 609 (670)
++. +.+++.++++.|.-++...
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHccc
Confidence 765 5679989998887766543
No 233
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=95.06 E-value=0.5 Score=50.16 Aligned_cols=190 Identities=9% Similarity=0.084 Sum_probs=133.2
Q ss_pred HHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHH
Q 037562 447 IEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNRE 526 (670)
Q Consensus 447 ~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~ 526 (670)
+..++++.+++++...+..+|..-+.-+-+... ...+..++..+++.+..-+.+. ++.+|+.....+..++..-..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~---~Lt~~~~~d~I~phv~~G~~DT-n~~Lre~Tlksm~~La~kL~~ 402 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYID---HLTKQILNDQIFPHVALGFLDT-NATLREQTLKSMAVLAPKLSK 402 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhh---hcCHHhhcchhHHHHHhhcccC-CHHHHHHHHHHHHHHHhhhch
Confidence 445899999999999998888877666665554 3455577888999999999999 999999999999988763111
Q ss_pred HHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHH
Q 037562 527 QIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENIL 606 (670)
Q Consensus 527 ~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~ 606 (670)
. -++...+..+-+.-.+++..+|.+...+++.++....+.. .+.-.+.+..+.++++-..-|.++..++..-.
T Consensus 403 ~---~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~----R~~vL~~aftralkdpf~paR~a~v~~l~at~ 475 (690)
T KOG1243|consen 403 R---NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV----RKRVLASAFTRALKDPFVPARKAGVLALAATQ 475 (690)
T ss_pred h---hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh----hccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence 1 1233344445544446678899999999999987643332 22234555666777777778888877776544
Q ss_pred HhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 037562 607 KVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYWSS 663 (670)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~~~ 663 (670)
...... ..+.. .++.+.-+.-+++..++..|.+.++.|++.
T Consensus 476 ~~~~~~-----------~va~k-----Ilp~l~pl~vd~e~~vr~~a~~~i~~fl~k 516 (690)
T KOG1243|consen 476 EYFDQS-----------EVANK-----ILPSLVPLTVDPEKTVRDTAEKAIRQFLEK 516 (690)
T ss_pred cccchh-----------hhhhh-----ccccccccccCcccchhhHHHHHHHHHHhh
Confidence 332221 12222 367777778888899999999999988753
No 234
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.05 E-value=3.5 Score=42.60 Aligned_cols=158 Identities=13% Similarity=0.094 Sum_probs=114.9
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC---CHHHHHHHHHHHHHHcCCChhh
Q 037562 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQD---YPQLQFKAAWALTNIASGTSEN 316 (670)
Q Consensus 240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~---~~~v~~~a~~~L~~l~~~~~~~ 316 (670)
...+.+.+.+++...+..|...+..+..+ .....+++...++..|.+++.+.+ ..++...+++++..+..+.. .
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d--~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-v 161 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLD--PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-V 161 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhcccc--HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-e
Confidence 46778888889988898899999888554 667888999999999999998765 24677777777777766432 1
Q ss_pred HHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhh
Q 037562 317 TKVVIDHGAVPIFVKLLA--SPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNF 394 (670)
Q Consensus 317 ~~~i~~~~~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l 394 (670)
.-..+...++.....+.. ..+..+-..|+..|-++...++..+..+.+.--+..++..+ +..+..++..|...+..+
T Consensus 162 sW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~nal 240 (713)
T KOG2999|consen 162 SWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNAL 240 (713)
T ss_pred eeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHHH
Confidence 111222233444444432 25567778899999999888887888888888899999999 666777877777777777
Q ss_pred hcCCCCC
Q 037562 395 CRGKPQP 401 (670)
Q Consensus 395 ~~~~~~~ 401 (670)
....+..
T Consensus 241 ~~~a~~~ 247 (713)
T KOG2999|consen 241 FRKAPDD 247 (713)
T ss_pred HhhCChH
Confidence 7665443
No 235
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.21 Score=51.23 Aligned_cols=154 Identities=21% Similarity=0.298 Sum_probs=104.7
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCCchhHHHHH
Q 037562 285 RFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKL-LASPSVDVRKQTVWALGNVAGDSPRCRDLVL 363 (670)
Q Consensus 285 ~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 363 (670)
.+-+++.+.+ +-+|...+..++.--.+.. +.|++..++.. .++.+.++|+.|+.+|+-+|.+++.
T Consensus 520 ~I~ell~d~d-s~lRy~G~fs~alAy~GTg-------n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~------ 585 (926)
T COG5116 520 YINELLYDKD-SILRYNGVFSLALAYVGTG-------NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD------ 585 (926)
T ss_pred HHHHHhcCch-HHhhhccHHHHHHHHhcCC-------cchhHhhhheeecccCchHHHHHHHHheeeeEecCcc------
Confidence 3445666666 6777766665544322221 24677888887 6779999999999999999977654
Q ss_pred hcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHH
Q 037562 364 SQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKV 443 (670)
Q Consensus 364 ~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~ 443 (670)
.++..+++|.++.+..++...+.+|.-.|.+... ..++..|-.+..+.+.-||..|+-+++-+.....+..
T Consensus 586 ---~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~L 656 (926)
T COG5116 586 ---LLVGTVELLSESHNFHVRAGVAVALGIACAGTGD------KVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPEL 656 (926)
T ss_pred ---hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCccc
Confidence 4777888888888999999888999888877522 3455667777888888899999988887763322221
Q ss_pred HHHHHcCCHHHHHHhcCCC
Q 037562 444 QAVIEAGVYPRLVELLGHS 462 (670)
Q Consensus 444 ~~~~~~~~i~~L~~lL~~~ 462 (670)
..-+. ++...+.+++.+.
T Consensus 657 np~v~-~I~k~f~~vI~~K 674 (926)
T COG5116 657 NPNVK-RIIKKFNRVIVDK 674 (926)
T ss_pred ChhHH-HHHHHHHHHHhhh
Confidence 11111 4455555555543
No 236
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.02 E-value=4.1 Score=45.46 Aligned_cols=241 Identities=17% Similarity=0.213 Sum_probs=143.9
Q ss_pred hhhHHHHHHhhcc-----CChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcC----CCC----ccchhHHHHH
Q 037562 407 RPALPVLAQLIRS-----NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLG----HSS----SSVLTPALRT 473 (670)
Q Consensus 407 ~~~i~~L~~lL~~-----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~----~~~----~~v~~~a~~~ 473 (670)
.|++..++.++.+ .+......++..|...+.. ..+.+.+++.|+++.|+..+. .+. ..+.+..+.+
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 4566667766653 2345666677777777655 456677888999998888874 333 5677777777
Q ss_pred HHHhhcCCchh-hH---HHHhC--------CChHHHHHhhccCC---chhHHHHHHHHHHHhhcCCHHHHHHHHhcCChH
Q 037562 474 IRNIVKGDDFQ-TQ---CIINC--------GALPYFLDMLVHNH---EESIKKEVSWIISNITCGNREQIQAVIDSGLIG 538 (670)
Q Consensus 474 L~~l~~~~~~~-~~---~l~~~--------~~~~~L~~~l~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~ 538 (670)
+..+....... .. ..... ..+..+++.+.+.. ++.+....+.+|.+++.++++..+.+++. +.
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~ 272 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FK 272 (802)
T ss_pred HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HH
Confidence 76665432211 10 00111 12666777766542 67889999999999999999888877762 22
Q ss_pred HHHHHhh--cCChhHHHHHHHHHHHhcCCC-----CHHHHHHHHHcCCcHHHHhhccCCCh--------HH--------H
Q 037562 539 PIVNLLQ--NTEFDTKKEAAWAISNATKFG-----THEQIKHLVREGCVKPLCDLLLCADP--------KI--------V 595 (670)
Q Consensus 539 ~L~~ll~--~~~~~v~~~a~~aL~~l~~~~-----~~~~~~~l~~~~~i~~L~~ll~~~~~--------~v--------~ 595 (670)
..+++=+ .....--...+..++.++..- .......+++.|++...++++...-| +- .
T Consensus 273 p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psL 352 (802)
T PF13764_consen 273 PYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSL 352 (802)
T ss_pred HhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcH
Confidence 2223211 111111122244555554421 24566778899999988888843322 21 2
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhc-CCCHHHHHHHHHHHHHhcCCc
Q 037562 596 TVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQS-HDDNGISEKAVEILETYWSSR 664 (670)
Q Consensus 596 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~-~~~~~v~~~a~~~l~~~~~~~ 664 (670)
..++..|.-+...... .+.+...+++..+-.|.. +.+..|-..|..+|+.+-..+
T Consensus 353 p~iL~lL~GLa~gh~~--------------tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~ 408 (802)
T PF13764_consen 353 PYILRLLRGLARGHEP--------------TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE 408 (802)
T ss_pred HHHHHHHHHHHhcCHH--------------HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence 3345555554443222 233445677877777744 446778999999998776544
No 237
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=94.94 E-value=0.046 Score=56.36 Aligned_cols=163 Identities=20% Similarity=0.208 Sum_probs=95.8
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM 102 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L 102 (670)
.-++|++++- +|.++.....-.+++|+++++..- .|..+|...+...+|++|.+.+- .+.++ ....+..+|.|++|
T Consensus 79 ~t~~LdlsnN-kl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N-~I~sv-~se~L~~l~alrsl 154 (873)
T KOG4194|consen 79 QTQTLDLSNN-KLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHN-LISSV-TSEELSALPALRSL 154 (873)
T ss_pred ceeeeecccc-ccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeecc-ccccc-cHHHHHhHhhhhhh
Confidence 4455777653 455554443457899999988664 57777776666777999988753 22232 22456678999999
Q ss_pred ccccccccceecccccccccccccccc---ccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcC-C
Q 037562 103 EIESCDKITEIVLVDDVVAQDEVITFR---ELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELS-T 178 (670)
Q Consensus 103 ~i~~c~~l~~~~~~~~~~~~~~~~~~~---~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~-~ 178 (670)
+++.- .+.++.. ..|| ++++|.+.+ ..++.+..+ .+..+.+|-.|.+.. ..+.++|..... +
T Consensus 155 DLSrN-~is~i~~----------~sfp~~~ni~~L~La~-N~It~l~~~-~F~~lnsL~tlkLsr-NrittLp~r~Fk~L 220 (873)
T KOG4194|consen 155 DLSRN-LISEIPK----------PSFPAKVNIKKLNLAS-NRITTLETG-HFDSLNSLLTLKLSR-NRITTLPQRSFKRL 220 (873)
T ss_pred hhhhc-hhhcccC----------CCCCCCCCceEEeecc-ccccccccc-cccccchheeeeccc-CcccccCHHHhhhc
Confidence 88653 2333321 2344 377776654 334444333 334455666666664 345666665443 7
Q ss_pred CCccceeeeecc-CCccceeeccchh
Q 037562 179 PNLHKVQLSRWD-GEEHWIWVHDLNT 203 (670)
Q Consensus 179 ~~L~~l~i~~~~-~~~~~~~~~~~~~ 203 (670)
|+|+.|++.+.. ..-+|...+.++.
T Consensus 221 ~~L~~LdLnrN~irive~ltFqgL~S 246 (873)
T KOG4194|consen 221 PKLESLDLNRNRIRIVEGLTFQGLPS 246 (873)
T ss_pred chhhhhhccccceeeehhhhhcCchh
Confidence 777777764322 2234666666665
No 238
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=94.93 E-value=0.0031 Score=64.95 Aligned_cols=147 Identities=16% Similarity=0.173 Sum_probs=77.3
Q ss_pred cccEEEeccC--cCcccccccccccCCCCcEEEEecCCCCccccCCC-ccccccceeeecccccccccccchhhhccccc
Q 037562 23 EVKISEAYNC--YRLENILIEESSVMNNLVILCVHCCDHLINLVPSS-TSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRL 99 (670)
Q Consensus 23 ~L~~L~i~~c--~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~-~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L 99 (670)
+|+.|.+-+. .+|+++|.. .....++-.|++++- +++++|.+. .++..|-.|++++- +|+.+ ||...+|..|
T Consensus 101 ~l~dLt~lDLShNqL~EvP~~-LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~N-rLe~L--PPQ~RRL~~L 175 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQLREVPTN-LEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNN-RLEML--PPQIRRLSML 175 (1255)
T ss_pred ccccceeeecchhhhhhcchh-hhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccc-hhhhc--CHHHHHHhhh
Confidence 5555554443 357777754 245566777777654 466666542 23444555555543 56655 3556677777
Q ss_pred ceeccccccccceeccccccccccccccccccccccccccccc----cccccCCcccCCCCccEEeEecCCCccccccCC
Q 037562 100 RYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNL----ISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGE 175 (670)
Q Consensus 100 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l----~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~ 175 (670)
++|.+++-|-.- ..+..+|+++.|..-.+.+- -.++.. ...+.+|..++++ |.+|..+|+..
T Consensus 176 qtL~Ls~NPL~h-----------fQLrQLPsmtsL~vLhms~TqRTl~N~Pts--ld~l~NL~dvDlS-~N~Lp~vPecl 241 (1255)
T KOG0444|consen 176 QTLKLSNNPLNH-----------FQLRQLPSMTSLSVLHMSNTQRTLDNIPTS--LDDLHNLRDVDLS-ENNLPIVPECL 241 (1255)
T ss_pred hhhhcCCChhhH-----------HHHhcCccchhhhhhhcccccchhhcCCCc--hhhhhhhhhcccc-ccCCCcchHHH
Confidence 777777655110 01122333333333322222 122221 2234455555554 56677777766
Q ss_pred cCCCCccceeeee
Q 037562 176 LSTPNLHKVQLSR 188 (670)
Q Consensus 176 ~~~~~L~~l~i~~ 188 (670)
..+++|+.|.+++
T Consensus 242 y~l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 242 YKLRNLRRLNLSG 254 (1255)
T ss_pred hhhhhhheeccCc
Confidence 6677777776654
No 239
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.93 E-value=0.0032 Score=55.57 Aligned_cols=63 Identities=24% Similarity=0.290 Sum_probs=29.8
Q ss_pred ccccccccccccccccccccCCcccCCCCccEEeEecCCCcccccc-CCcCCCCccceeeeecc
Q 037562 128 FRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSG-GELSTPNLHKVQLSRWD 190 (670)
Q Consensus 128 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~-~~~~~~~L~~l~i~~~~ 190 (670)
+++++.|.+.+|..+..||.+-...-.|+|+.|+|++||.++..-- +...+++|+.|.+.+.+
T Consensus 124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 4455555555555555555432223445555555555555442211 11234555555554333
No 240
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=94.92 E-value=0.61 Score=51.75 Aligned_cols=189 Identities=12% Similarity=0.061 Sum_probs=133.4
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChh
Q 037562 325 AVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFN 404 (670)
Q Consensus 325 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 404 (670)
+-+.+..-+.+++..-|..|+..+........ ........|.+..++.....+.+..+...++.+|..++..-......
T Consensus 254 i~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~ 332 (815)
T KOG1820|consen 254 ITKNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK 332 (815)
T ss_pred cChHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH
Confidence 44555566667778888888888877765443 11111122345556666667788888889999999999876555555
Q ss_pred hhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCc-h
Q 037562 405 QVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDD-F 483 (670)
Q Consensus 405 ~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~ 483 (670)
......|.++.-+......++..+..++-.++.... -...++.+...+.+.++.++..+...+.......+ .
T Consensus 333 ~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~ 405 (815)
T KOG1820|consen 333 YAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK 405 (815)
T ss_pred HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence 667888999999988888888887777766554211 12466888899999999999998887777765443 2
Q ss_pred hhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc
Q 037562 484 QTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC 522 (670)
Q Consensus 484 ~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 522 (670)
....-.-.+.++.++....+. +.+||..|..+++.+..
T Consensus 406 ~~~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 406 TVEKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK 443 (815)
T ss_pred CcchhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence 111122235788888888888 99999999999888765
No 241
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.86 E-value=0.039 Score=32.93 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=25.0
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcC
Q 037562 283 VPRFVEFLMRQDYPQLQFKAAWALTNIAS 311 (670)
Q Consensus 283 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 311 (670)
+|.+++++++++ ++||..|+.+|+.++.
T Consensus 2 lp~l~~~l~D~~-~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPS-PEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCC-HHHHHHHHHHHHHHHh
Confidence 688999999999 8999999999999875
No 242
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.79 E-value=0.049 Score=32.51 Aligned_cols=29 Identities=31% Similarity=0.439 Sum_probs=25.5
Q ss_pred hHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 037562 409 ALPVLAQLIRSNDEEVLTDACWALSYLSD 437 (670)
Q Consensus 409 ~i~~L~~lL~~~~~~v~~~al~~L~~l~~ 437 (670)
++|.+.+++++++++||..|+.+++.++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999874
No 243
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=94.72 E-value=8.8 Score=42.68 Aligned_cols=131 Identities=11% Similarity=0.129 Sum_probs=88.8
Q ss_pred hhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh-cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHh
Q 037562 507 ESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ-NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCD 585 (670)
Q Consensus 507 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ 585 (670)
+.++..+..+++++|....... ...+|.|++-|+ +....+|.+.+.|.+.++.+. ..+.+ ..+|.+..
T Consensus 945 ~~vra~~vvTlakmcLah~~La-----Kr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y-----Tam~d-~YiP~I~~ 1013 (1529)
T KOG0413|consen 945 DKVRAVGVVTLAKMCLAHDRLA-----KRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY-----TAMTD-RYIPMIAA 1013 (1529)
T ss_pred hHHHHHHHHHHHHHHhhhhHHH-----HHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH-----HHHHH-HhhHHHHH
Confidence 4567788889999988655533 346788998888 556788888888888888741 11222 37999999
Q ss_pred hccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCcc
Q 037562 586 LLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYWSSRV 665 (670)
Q Consensus 586 ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~~~~~ 665 (670)
.|.++++-||.+++-.|.++++.+-.-=+ -..| +.-+.. .-+.+++++..|.-.+...+..++
T Consensus 1014 ~L~Dp~~iVRrqt~ilL~rLLq~~~vKw~-----------G~Lf-----~Rf~l~-l~D~~edIr~~a~f~~~~vL~~~~ 1076 (1529)
T KOG0413|consen 1014 SLCDPSVIVRRQTIILLARLLQFGIVKWN-----------GELF-----IRFMLA-LLDANEDIRNDAKFYISEVLQSEE 1076 (1529)
T ss_pred HhcCchHHHHHHHHHHHHHHHhhhhhhcc-----------hhhH-----HHHHHH-HcccCHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999875421100 0011 222222 234567777777766666555443
No 244
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=94.67 E-value=0.36 Score=42.35 Aligned_cols=146 Identities=8% Similarity=0.035 Sum_probs=87.6
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 037562 282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDL 361 (670)
Q Consensus 282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 361 (670)
.++.|+.+++.+....+|..|+++++.+..-+|-..+.+.... +.-. -...+.......... .+.... .+.
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~~~--~~~~~~~~~~~~l~~-~~~~~~----~ee 81 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DSKS--SENSNDESTDISLPM-MGISPS----SEE 81 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Cccc--cccccccchhhHHhh-ccCCCc----hHH
Confidence 5677888998876589999999999999986665544332211 1000 011111222211111 111111 122
Q ss_pred HHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhc
Q 037562 362 VLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLS 436 (670)
Q Consensus 362 i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~ 436 (670)
..-..++..|++.+++..-..-...+..++.++..............++|.++..+++.++..++....-|+.+.
T Consensus 82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv 156 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV 156 (160)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 233336788888885544444455677777777755445556666889999999999777788877776666654
No 245
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=94.57 E-value=3.6 Score=38.87 Aligned_cols=202 Identities=19% Similarity=0.169 Sum_probs=117.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHH
Q 037562 283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362 (670)
Q Consensus 283 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 362 (670)
++.++.-+....+++.+...+.+|..++.++..... -+++.+..+...+....+..+.+.+..+-..++..-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 445555344444489999999999999985422222 235677777777777777777788877765544321
Q ss_pred HhcCChHHHHHHh---------cccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhh-ccCChhHHHHHHHHH
Q 037562 363 LSQGALIPLLAEL---------NENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLI-RSNDEEVLTDACWAL 432 (670)
Q Consensus 363 ~~~~~i~~Ll~~l---------~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~al~~L 432 (670)
+.+..++... ..+...+.....+.++..+|...|. .....++.+..++ ++.++.++..++.++
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 2344444431 0112224444556778888887766 4456778888888 788899999999999
Q ss_pred HHhccCChHHHHHHHHcCCHHHHHHhcCCC-CccchhHHHHHHHHhhcCCchh-hHHHHhCCChHHHHHhhccC
Q 037562 433 SYLSDGTNDKVQAVIEAGVYPRLVELLGHS-SSSVLTPALRTIRNIVKGDDFQ-TQCIINCGALPYFLDMLVHN 504 (670)
Q Consensus 433 ~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~-~~~l~~~~~~~~L~~~l~~~ 504 (670)
..++...--. +. .....+.+-++.+ .+.+....+..+..+....-+. ........++..+.++..+.
T Consensus 147 ~~Lc~~~vvd---~~--s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~ 215 (234)
T PF12530_consen 147 APLCEAEVVD---FY--SAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS 215 (234)
T ss_pred HHHHHHhhcc---HH--HHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence 9998432211 11 2334455555333 2334443333333333322111 11223445666666766666
No 246
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.56 E-value=1.7 Score=45.17 Aligned_cols=110 Identities=17% Similarity=0.163 Sum_probs=80.8
Q ss_pred hhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCc
Q 037562 403 FNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDD 482 (670)
Q Consensus 403 ~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 482 (670)
...+.+.+-.++..+.+.|..||..++..++.++..-.+... .+..|++..+..-+-+..+.||..|+.+|+.+-....
T Consensus 86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe-~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ 164 (885)
T COG5218 86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDE-VLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL 164 (885)
T ss_pred hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHH-HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence 455677888888888899999999999999998865443333 3444788888888888888999999999998864332
Q ss_pred hhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHH
Q 037562 483 FQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIIS 518 (670)
Q Consensus 483 ~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~ 518 (670)
.... .....+...++++++.+||+.|...+.
T Consensus 165 neen-----~~~n~l~~~vqnDPS~EVRr~allni~ 195 (885)
T COG5218 165 NEEN-----RIVNLLKDIVQNDPSDEVRRLALLNIS 195 (885)
T ss_pred ChHH-----HHHHHHHHHHhcCcHHHHHHHHHHHee
Confidence 2111 234467788888778999988765443
No 247
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.42 E-value=0.034 Score=36.43 Aligned_cols=15 Identities=13% Similarity=0.228 Sum_probs=6.9
Q ss_pred hhcccccceeccccc
Q 037562 93 AKTLVRLRYMEIESC 107 (670)
Q Consensus 93 ~~~l~~L~~L~i~~c 107 (670)
+.+|++|+.|+++++
T Consensus 20 l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 20 LSNLPNLETLNLSNN 34 (44)
T ss_dssp GTTCTTSSEEEETSS
T ss_pred HhCCCCCCEEEecCC
Confidence 344444444444444
No 248
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=94.30 E-value=2.6 Score=42.86 Aligned_cols=191 Identities=17% Similarity=0.256 Sum_probs=117.8
Q ss_pred HHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHH---hh--hcCCCCCCh-hhhhhhHHHHHHh
Q 037562 343 QTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLF---NF--CRGKPQPPF-NQVRPALPVLAQL 416 (670)
Q Consensus 343 ~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~---~l--~~~~~~~~~-~~~~~~i~~L~~l 416 (670)
.|+..|-.+....+..-..+.+.+++..++..+... + ..++. +- ....+.... .... ..-
T Consensus 3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~E----v----~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 68 (379)
T PF06025_consen 3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYE----V----DFALEENKNEEAGSGIPPEYKESSVD------GYS 68 (379)
T ss_pred HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHH----H----HHHHhcccccCCCCCCCCCccccccc------ccc
Confidence 466677777766666667778889999999998322 1 11111 11 111110000 0000 000
Q ss_pred hccCChhHHHHHHHHHHHhcc---CChHHHHHHHH-cCCHHHHHHhcCCCC---ccchhHHHHHHHHhhcCCchhhHHHH
Q 037562 417 IRSNDEEVLTDACWALSYLSD---GTNDKVQAVIE-AGVYPRLVELLGHSS---SSVLTPALRTIRNIVKGDDFQTQCII 489 (670)
Q Consensus 417 L~~~~~~v~~~al~~L~~l~~---~~~~~~~~~~~-~~~i~~L~~lL~~~~---~~v~~~a~~~L~~l~~~~~~~~~~l~ 489 (670)
+...........++.+..+.. ......+.+.+ ..+...|...+++.. +.+-..|+.++..+..+.|.....+.
T Consensus 69 i~~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~ 148 (379)
T PF06025_consen 69 ISYQRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQ 148 (379)
T ss_pred cCHHHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 000011223333344444333 33344455666 556677777777753 46888899999999999998888888
Q ss_pred hCCChHHHHHhhc-cC--CchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCC
Q 037562 490 NCGALPYFLDMLV-HN--HEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTE 548 (670)
Q Consensus 490 ~~~~~~~L~~~l~-~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 548 (670)
+.|+.+.+++.+. .. ++.++....-.+++.+|-. ....+.+.+.+.++.+++++.+++
T Consensus 149 e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN-~~Gl~~~~~~~~l~~~f~if~s~~ 209 (379)
T PF06025_consen 149 EAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN-NRGLEKVKSSNPLDKLFEIFTSPD 209 (379)
T ss_pred HcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC-HHHHHHHHhcChHHHHHHHhCCHH
Confidence 9999999999998 32 2556666666777777664 666788888999999999988654
No 249
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=94.19 E-value=0.0086 Score=64.90 Aligned_cols=110 Identities=25% Similarity=0.373 Sum_probs=62.3
Q ss_pred cCCCccccccceeeecccccccccccchhhhcccccceeccccccccceecccccccccccccccccccccccccccccc
Q 037562 64 VPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLI 143 (670)
Q Consensus 64 ~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 143 (670)
++-..+|.+||.|++++- .|.. ||...+.+|+.||+|.++|- +|+.++. ..-.+++|++|..++ ..|.
T Consensus 376 ~p~l~~~~hLKVLhLsyN-rL~~-fpas~~~kle~LeeL~LSGN-kL~~Lp~--------tva~~~~L~tL~ahs-N~l~ 443 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYN-RLNS-FPASKLRKLEELEELNLSGN-KLTTLPD--------TVANLGRLHTLRAHS-NQLL 443 (1081)
T ss_pred hhhhccccceeeeeeccc-cccc-CCHHHHhchHHhHHHhcccc-hhhhhhH--------HHHhhhhhHHHhhcC-Ccee
Confidence 344566888888888754 4444 34456778888888888764 3555432 122355555554432 2233
Q ss_pred ccccCCcccCCCCccEEeEecCCCcc--ccccCCcCCCCccceeeeecc
Q 037562 144 SFCSGNCAFTFPSLEILVVNYCPNMK--IFSGGELSTPNLHKVQLSRWD 190 (670)
Q Consensus 144 ~~~~~~~~~~~~~L~~L~i~~C~~l~--~~p~~~~~~~~L~~l~i~~~~ 190 (670)
.+| +...+|.|+.++++ |.+|. .+|... +.|+|++|++++..
T Consensus 444 ~fP---e~~~l~qL~~lDlS-~N~L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 444 SFP---ELAQLPQLKVLDLS-CNNLSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred ech---hhhhcCcceEEecc-cchhhhhhhhhhC-CCcccceeeccCCc
Confidence 333 24456667777765 56665 233322 23677777765544
No 250
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=93.97 E-value=6.2 Score=37.96 Aligned_cols=205 Identities=12% Similarity=0.107 Sum_probs=136.7
Q ss_pred HHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchh----hHHHHhCCChHHHHHhhccCCc-hhHHHHHHHHH
Q 037562 443 VQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQ----TQCIINCGALPYFLDMLVHNHE-ESIKKEVSWII 517 (670)
Q Consensus 443 ~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~----~~~l~~~~~~~~L~~~l~~~~~-~~v~~~a~~~L 517 (670)
.+.+.++|.+..++..+...+.+-+..++.+..++-...... ...+. + -.+.+..++....+ +++.-.+...+
T Consensus 72 tqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~-t-~~e~~~~lv~~~~~~~~iaL~cg~ml 149 (342)
T KOG1566|consen 72 TQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLE-T-NPEILDNLVKGYENTPEIALTCGNML 149 (342)
T ss_pred HHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHH-h-CHHHHHHHHhhhccchHHHHHHHHHH
Confidence 355788899999999999999999999999999987543221 22222 1 12233333333312 44444444444
Q ss_pred HHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCC----cHHHHhhccCCChH
Q 037562 518 SNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGC----VKPLCDLLLCADPK 593 (670)
Q Consensus 518 ~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~----i~~L~~ll~~~~~~ 593 (670)
....+ .+...+.+....-+......++.+..++...|..+...+.... ......+...+. .+.-..++.+++.-
T Consensus 150 rEcir-he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~H-k~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyv 227 (342)
T KOG1566|consen 150 RECIR-HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRH-KSVVAEFLIRNYDNFFAEVYEKLLRSENYV 227 (342)
T ss_pred HHHHh-hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHh-HHHHHHHHHhChhhhHHHHHHHHhccccee
Confidence 44433 3556667777778888888888889999999999998887763 333333343333 34466688999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562 594 IVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYW 661 (670)
Q Consensus 594 v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~ 661 (670)
++..++++++.++....+.. .-.+.+..-..+..+..|+.+++..++-.|-.+-..+.
T Consensus 228 tkrqs~kllg~llldr~N~~----------~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfv 285 (342)
T KOG1566|consen 228 TKRQSLKLLGELLLDRSNSA----------VMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFV 285 (342)
T ss_pred hHHHHHHhHHHHHhCCCcHH----------HHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHh
Confidence 99999999999887654432 23444554556677778888888888888776655443
No 251
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=93.93 E-value=0.77 Score=50.99 Aligned_cols=193 Identities=15% Similarity=0.107 Sum_probs=129.1
Q ss_pred hhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHh-cCCCCccchhHHHHHHHHhhcCCchhhH
Q 037562 408 PALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVEL-LGHSSSSVLTPALRTIRNIVKGDDFQTQ 486 (670)
Q Consensus 408 ~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~ 486 (670)
..-+.+..-+.+.+..-+..++..+............ -...+.+..++.. +.+.+..+...|+.+|..++........
T Consensus 253 ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~-~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~ 331 (815)
T KOG1820|consen 253 KITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIV-KGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR 331 (815)
T ss_pred hcChHHHHhhhccchHHHHHHHHHHHHHHhccccccc-cCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH
Confidence 3334455555577777888888877776644331111 1111333333333 3456777889999999999876544333
Q ss_pred HHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCC
Q 037562 487 CIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFG 566 (670)
Q Consensus 487 ~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 566 (670)
-...+.++.+++.+... ...++..+..++-.++...+- ..+++.+...+.++++.++..+...+.......
T Consensus 332 -~~~~~v~p~lld~lkek-k~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~ 402 (815)
T KOG1820|consen 332 -KYAKNVFPSLLDRLKEK-KSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKL 402 (815)
T ss_pred -HHHHhhcchHHHHhhhc-cHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhc
Confidence 22346888999999888 888888877777776553221 235677888899999999999888888877653
Q ss_pred CHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhh
Q 037562 567 THEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGV 610 (670)
Q Consensus 567 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~ 610 (670)
++.....-.-.+.++.++....+.+.+||.++..++..+++...
T Consensus 403 ~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 403 GPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred CCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 32222222234578888888899999999999999998886543
No 252
>PLN03150 hypothetical protein; Provisional
Probab=93.91 E-value=0.09 Score=57.77 Aligned_cols=57 Identities=7% Similarity=0.036 Sum_probs=24.0
Q ss_pred CcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccc
Q 037562 49 LVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESC 107 (670)
Q Consensus 49 L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 107 (670)
+..|++.++.--..+|..+..+++|+.|+++++. +.... +..+..+++|+.|+++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~-l~g~i-P~~~~~l~~L~~LdLs~N 476 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNS-IRGNI-PPSLGSITSLEVLDLSYN 476 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCc-ccCcC-ChHHhCCCCCCEEECCCC
Confidence 3444444432212233334445555555555542 22111 123445555555555544
No 253
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=93.78 E-value=0.069 Score=34.96 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=28.8
Q ss_pred CCCcEEEEecCCCCccccCCCccccccceeeeccccccccc
Q 037562 47 NNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIV 87 (670)
Q Consensus 47 ~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l 87 (670)
++|++|+++++ ++..+++.+..+++|+.|+++++ .++++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 47888998887 47777776788899999999988 45544
No 254
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.71 E-value=5.6 Score=46.67 Aligned_cols=148 Identities=15% Similarity=0.092 Sum_probs=93.8
Q ss_pred CCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHH
Q 037562 450 GVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQ 529 (670)
Q Consensus 450 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 529 (670)
++++.|..-|.+++..+|..|...+|.+......... =-.......++.-+.+. +.+||.+++....++...++....
T Consensus 259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence 7889999999999999999999999999875433221 00123455566666777 899999999999888776565332
Q ss_pred HHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHh
Q 037562 530 AVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKV 608 (670)
Q Consensus 530 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~ 608 (670)
... ....+-.. +.|++++....-++..+.. ......+... .+..+.+-+.+....||..|+..+..+++.
T Consensus 337 ~~~---~~~~l~~~--~~D~~~rir~~v~i~~~~v---~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 337 AST---ILLALRER--DLDEDVRVRTQVVIVACDV---MKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHH---HHHHHHhh--cCChhhhheeeEEEEEeeh---hHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 221 12222222 3344444333322222221 1122222233 566666777889999999999999988874
No 255
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=93.66 E-value=7 Score=37.54 Aligned_cols=223 Identities=13% Similarity=0.086 Sum_probs=132.9
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc-cCChhHHHHHHHHHHhhhcCCCCCChhhh
Q 037562 328 IFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE-NANLSMLRTATWTLFNFCRGKPQPPFNQV 406 (670)
Q Consensus 328 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 406 (670)
.|-..|.++++.+|..|+..|+.+...-+.. ......+..++....+ -.|......++.++..+..... ......
T Consensus 3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~---~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~-~~~~~~ 78 (262)
T PF14500_consen 3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD---FLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKN-FSPESA 78 (262)
T ss_pred chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcC-CChhhH
Confidence 4556778899999999999999987554421 1222235555555422 2345555555666666664432 112222
Q ss_pred hhhHHHHHHhhc--cCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC-CCccchhHHHHHHHHhhcCCch
Q 037562 407 RPALPVLAQLIR--SNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH-SSSSVLTPALRTIRNIVKGDDF 483 (670)
Q Consensus 407 ~~~i~~L~~lL~--~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~ 483 (670)
..++..+.+-.+ +--...|..+...+..+..+.....+.+ ..+++..++..+.. .||+-...+...+..+....+.
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~-~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~ 157 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSM-GDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI 157 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhc-hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence 333333333222 2246778888888888876644333222 23677778887776 5777777777777777654431
Q ss_pred hhHHHHhCCChHHHHHhhcc--------CC-ch--hHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHH
Q 037562 484 QTQCIINCGALPYFLDMLVH--------NH-EE--SIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTK 552 (670)
Q Consensus 484 ~~~~l~~~~~~~~L~~~l~~--------~~-~~--~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 552 (670)
....+-+.+.+.. ++ ++ -.++.-..+|.+....++.. ..-.+|.|++-|.++...++
T Consensus 158 -------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~K 225 (262)
T PF14500_consen 158 -------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSVK 225 (262)
T ss_pred -------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHHH
Confidence 2233334443321 11 22 23444555666655554542 23468899999999999999
Q ss_pred HHHHHHHHHhcCCCC
Q 037562 553 KEAAWAISNATKFGT 567 (670)
Q Consensus 553 ~~a~~aL~~l~~~~~ 567 (670)
..++.+|..++..-.
T Consensus 226 ~D~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 226 LDSLQTLKACIENYG 240 (262)
T ss_pred HHHHHHHHHHHHHCC
Confidence 999999999877533
No 256
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.51 E-value=0.78 Score=48.44 Aligned_cols=167 Identities=13% Similarity=0.153 Sum_probs=114.6
Q ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcC-CCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHH
Q 037562 420 NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLG-HSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFL 498 (670)
Q Consensus 420 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~ 498 (670)
+|++++..|.-+|..+.--+..... .-+|.++..+. +++|.+|.+|.-.++.++......+. ..-..|.
T Consensus 908 sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~d-----e~t~yLy 977 (1128)
T COG5098 908 SDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTAD-----EHTHYLY 977 (1128)
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehhhhhH-----HHHHHHH
Confidence 5788998888888876543333222 34678888887 79999999999999988764433333 2345677
Q ss_pred HhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcC
Q 037562 499 DMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREG 578 (670)
Q Consensus 499 ~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~ 578 (670)
.-|.+. +..||+.+..++.++..... +.-.|-++.+..++.++|.++...|-..+..++...+ .. -+|
T Consensus 978 rrL~De-~~~V~rtclmti~fLilagq-----~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~KdN-t~-----yn~ 1045 (1128)
T COG5098 978 RRLGDE-DADVRRTCLMTIHFLILAGQ-----LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKDN-TM-----YNG 1045 (1128)
T ss_pred HHhcch-hhHHHHHHHHHHHHHHHccc-----eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhccc-ch-----hhh
Confidence 788888 99999999999999866432 1235778999999999999999999999999998632 21 233
Q ss_pred CcHHHHhhcc---CCChHHHHHHHHHHHHHHHhh
Q 037562 579 CVKPLCDLLL---CADPKIVTVCLEGLENILKVG 609 (670)
Q Consensus 579 ~i~~L~~ll~---~~~~~v~~~a~~~l~~l~~~~ 609 (670)
.++....+-. .++.+ -+.+++.|..++...
T Consensus 1046 fidifs~ls~~ae~g~e~-fk~II~FLt~fI~ke 1078 (1128)
T COG5098 1046 FIDIFSTLSSDAENGQEP-FKLIIGFLTDFISKE 1078 (1128)
T ss_pred hHHHHHHcCchhhcCCCc-HHHHHHHHHHHHHHH
Confidence 3433333331 12222 345566666665543
No 257
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=93.49 E-value=0.41 Score=35.19 Aligned_cols=67 Identities=18% Similarity=0.103 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCC
Q 037562 255 QLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHG 324 (670)
Q Consensus 255 ~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~ 324 (670)
...|+|++.++++. +.....+.+.++++.++++..+.+...+|-.|..+|+-++. +.+..+.+.+.|
T Consensus 4 lKaaLWaighIgss--~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSS--PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcC--hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence 46799999999775 45556666789999999999876657999999999999998 777776665544
No 258
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=93.31 E-value=7.4 Score=36.76 Aligned_cols=139 Identities=22% Similarity=0.139 Sum_probs=88.9
Q ss_pred HHHHH-hhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHH
Q 037562 411 PVLAQ-LIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCII 489 (670)
Q Consensus 411 ~~L~~-lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~ 489 (670)
+.+.. +-+..+++.+...+.+|..++.+...... -+++.+..+...+....+..+.+.+..+...++...
T Consensus 3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---- 73 (234)
T PF12530_consen 3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---- 73 (234)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence 33443 45567899999999999999977521112 244566677777766666677777777766544322
Q ss_pred hCCChHHHHHh---------hccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHh-hcCChhHHHHHHHHH
Q 037562 490 NCGALPYFLDM---------LVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLL-QNTEFDTKKEAAWAI 559 (670)
Q Consensus 490 ~~~~~~~L~~~---------l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~a~~aL 559 (670)
+.+..++.. .......+.....+..+..+|...++.. ..+++.+..++ ++.++.++..++.++
T Consensus 74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale~l 146 (234)
T PF12530_consen 74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALEAL 146 (234)
T ss_pred --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 222322222 1111134455555678888887666622 23577788888 778888999999999
Q ss_pred HHhcCC
Q 037562 560 SNATKF 565 (670)
Q Consensus 560 ~~l~~~ 565 (670)
..++..
T Consensus 147 ~~Lc~~ 152 (234)
T PF12530_consen 147 APLCEA 152 (234)
T ss_pred HHHHHH
Confidence 999854
No 259
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.30 E-value=0.056 Score=27.05 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=9.3
Q ss_pred CCccEEeEecCCCccccc
Q 037562 155 PSLEILVVNYCPNMKIFS 172 (670)
Q Consensus 155 ~~L~~L~i~~C~~l~~~p 172 (670)
|+|+.|++++|. |+.+|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 467777777776 66665
No 260
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.29 E-value=0.055 Score=50.91 Aligned_cols=151 Identities=21% Similarity=0.251 Sum_probs=91.8
Q ss_pred ccCCCCcEEEEecCCCCccccCCC-ccccccceeeecccccccccccchhhhcccccceeccccccccceeccccccccc
Q 037562 44 SVMNNLVILCVHCCDHLINLVPSS-TSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQ 122 (670)
Q Consensus 44 ~~~~~L~~L~i~~c~~l~~~~~~~-~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 122 (670)
..+|.|+.|++ +|..|.+..... ....+|+.|.+.|-. |..-...+.+..+|.+++|++++- +++.+-..++.
T Consensus 94 e~lP~l~~LNl-s~N~L~s~I~~lp~p~~nl~~lVLNgT~-L~w~~~~s~l~~lP~vtelHmS~N-~~rq~n~Dd~c--- 167 (418)
T KOG2982|consen 94 EQLPALTTLNL-SCNSLSSDIKSLPLPLKNLRVLVLNGTG-LSWTQSTSSLDDLPKVTELHMSDN-SLRQLNLDDNC--- 167 (418)
T ss_pred hcCccceEeec-cCCcCCCccccCcccccceEEEEEcCCC-CChhhhhhhhhcchhhhhhhhccc-hhhhhcccccc---
Confidence 46899999998 566665544333 245689999887752 211111234556788888877643 22222211111
Q ss_pred cccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccc--cCCcCCCCccceeeeeccCCccceeecc
Q 037562 123 DEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFS--GGELSTPNLHKVQLSRWDGEEHWIWVHD 200 (670)
Q Consensus 123 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p--~~~~~~~~L~~l~i~~~~~~~~~~~~~~ 200 (670)
....-|.+++|+...|+...-.........||++..+.+..|| +++.. .+...+|++-.|.++..+-+. |-..+.
T Consensus 168 -~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~~ids-wasvD~ 244 (418)
T KOG2982|consen 168 -IEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGANNIDS-WASVDA 244 (418)
T ss_pred -ccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc-ccchhhcccCCCCCcchhhhhccccccc-HHHHHH
Confidence 1123567888888888766543333334568999999999998 34332 344457788888776555443 666677
Q ss_pred chh
Q 037562 201 LNT 203 (670)
Q Consensus 201 ~~~ 203 (670)
+|.
T Consensus 245 Ln~ 247 (418)
T KOG2982|consen 245 LNG 247 (418)
T ss_pred HcC
Confidence 776
No 261
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=93.16 E-value=27 Score=43.16 Aligned_cols=264 Identities=12% Similarity=0.028 Sum_probs=140.8
Q ss_pred CCChHHHHHHHHHHHHHhcCC--CCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCCh
Q 037562 249 SDDNSLQLEATTLFINLLSFD--RSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAV 326 (670)
Q Consensus 249 ~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i 326 (670)
+.+..+...|+..|++++... ..+....-.+..++.++..++.+....++++.++.++.++..... .. +..| =
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---~n-IkSG-W 1222 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---NN-VKSG-W 1222 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---hh-hhcC-c
Confidence 456789999999998886642 111112233556788888878766558999999999999876222 22 2333 3
Q ss_pred HHHHHhh----CCCCHHHHHHHHHHHHHhhCCCch-h----HHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhh--
Q 037562 327 PIFVKLL----ASPSVDVRKQTVWALGNVAGDSPR-C----RDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFC-- 395 (670)
Q Consensus 327 ~~L~~lL----~~~~~~v~~~a~~~L~~l~~~~~~-~----~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~-- 395 (670)
+.+..++ .+.++.+...|..++..++.+.-. . ...+.+ .+..+..+..+..+.++--.|+..|++++
T Consensus 1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~D--lV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076 1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTD--CVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHH--HHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence 4444444 356788888888888877643111 0 111211 34444444433333444344554455331
Q ss_pred --cCC-----C------------------C------CChh---hhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCh-
Q 037562 396 --RGK-----P------------------Q------PPFN---QVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTN- 440 (670)
Q Consensus 396 --~~~-----~------------------~------~~~~---~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~- 440 (670)
... . . .... ..-.++..+..+..+++.+||..|+.+|-.+.....
T Consensus 1301 La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076 1301 LAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred HHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence 110 0 0 0000 112233344455567789999999999877663322
Q ss_pred ----HHHHHHHHcCCHHHHHHhcCCC----------------C---cc----chhHHHHHHHHhh---cCCchhhHHHHh
Q 037562 441 ----DKVQAVIEAGVYPRLVELLGHS----------------S---SS----VLTPALRTIRNIV---KGDDFQTQCIIN 490 (670)
Q Consensus 441 ----~~~~~~~~~~~i~~L~~lL~~~----------------~---~~----v~~~a~~~L~~l~---~~~~~~~~~l~~ 490 (670)
+.-..++. +++-.+...++.. + .+ +...+..+|..++ ...-+.... +-
T Consensus 1381 ~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~-~L 1458 (1780)
T PLN03076 1381 LFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNP-LL 1458 (1780)
T ss_pred cCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 22222333 3444444443310 0 00 2233333444443 222122221 22
Q ss_pred CCChHHHHHhhccCCchhHHHHHHHHHHHhhc
Q 037562 491 CGALPYFLDMLVHNHEESIKKEVSWIISNITC 522 (670)
Q Consensus 491 ~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 522 (670)
.+++..|...+..+ +..+.+.+..++.++..
T Consensus 1459 ~~~l~ll~~ci~q~-n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076 1459 KKVLMLLVSFIKRP-HQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred HHHHHHHHHHHcCc-hHHHHHHHHHHHHHHHH
Confidence 35666666677777 88888888888888875
No 262
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=93.13 E-value=1.8 Score=38.67 Aligned_cols=141 Identities=17% Similarity=0.146 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHcCC-Chh----hHHHHH------hC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhc
Q 037562 298 LQFKAAWALTNIASG-TSE----NTKVVI------DH-GAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQ 365 (670)
Q Consensus 298 v~~~a~~~L~~l~~~-~~~----~~~~i~------~~-~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 365 (670)
+|..|+.+|..++.. ++. +...++ .. .-.+.+.-++.++++.+|..|+.++..+-.+...+-....+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 566777777777763 111 011111 11 223344456788999999999999999876543211111100
Q ss_pred -------------------CChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCCh--hhhhhhHHHHHHhhccCChhH
Q 037562 366 -------------------GALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPF--NQVRPALPVLAQLIRSNDEEV 424 (670)
Q Consensus 366 -------------------~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~i~~L~~lL~~~~~~v 424 (670)
..-..|+..+....+..+....+.++..+....|..+. .....++..+..++.+.|.++
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 12334555666667788888999999999998866543 334667777778888999999
Q ss_pred HHHHHHHHHHhccC
Q 037562 425 LTDACWALSYLSDG 438 (670)
Q Consensus 425 ~~~al~~L~~l~~~ 438 (670)
+..++.+++.+...
T Consensus 162 ~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 162 RVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999887644
No 263
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.98 E-value=2.8 Score=44.56 Aligned_cols=189 Identities=12% Similarity=0.045 Sum_probs=114.6
Q ss_pred hHHHHHHhhccCChhHHHHHHHHHHHhccCC-h----HHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCch
Q 037562 409 ALPVLAQLIRSNDEEVLTDACWALSYLSDGT-N----DKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDF 483 (670)
Q Consensus 409 ~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~-~----~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 483 (670)
.-|.+.+.|+-.+..||.+|+..+.++-.-. + +....+++ +-...+..+|.++-+.||..|..-+..+....-.
T Consensus 175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe 253 (1005)
T KOG1949|consen 175 YKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKFWE 253 (1005)
T ss_pred HhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 3466778888899999999999998876221 1 12223444 3457889999999999999998877776542211
Q ss_pred hhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhc
Q 037562 484 QTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNAT 563 (670)
Q Consensus 484 ~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 563 (670)
.+...+-..++..+..-+..+...+||-.....+..+... |... .+.+ .++|.+-..+.+....||..+...|..+-
T Consensus 254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n-p~sh-~~le-~~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN-PLSH-PLLE-QLLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC-ccch-hHHH-HHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 1111111123333333344343668888888888888653 2211 1222 24566666777888899999998888774
Q ss_pred CCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHH
Q 037562 564 KFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENI 605 (670)
Q Consensus 564 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l 605 (670)
.. ....+..---.+.++.-|..++..+....+..+-+.
T Consensus 331 ~v----ra~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s 368 (1005)
T KOG1949|consen 331 AV----RAAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNS 368 (1005)
T ss_pred hh----hhhhhhccccHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 42 222223322345556666666666665555555443
No 264
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=92.90 E-value=7 Score=39.74 Aligned_cols=274 Identities=16% Similarity=0.128 Sum_probs=135.9
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHH-HHHHHHhhCCCchhHH
Q 037562 283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSVDVRKQT-VWALGNVAGDSPRCRD 360 (670)
Q Consensus 283 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~v~~~a-~~~L~~l~~~~~~~~~ 360 (670)
+..++.-+.+.....+|..++--|+.-+. ++.++..+...|..+.+.+.+.+ ++..+...+ +.++.-++.+.. ...
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence 44555555544436889888888888887 89999999999999999999955 444244444 444444444433 233
Q ss_pred HHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhc---------cCChhHHHHHHHH
Q 037562 361 LVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIR---------SNDEEVLTDACWA 431 (670)
Q Consensus 361 ~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~---------~~~~~v~~~al~~ 431 (670)
.+.+.+....+++++.-....++..... ... ...........+..+...+. .....-+..++.+
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~-~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~ 173 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSR-KKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA 173 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchh------hhh-hhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence 3334444555566663000000000000 000 00000000111111112220 0112223333333
Q ss_pred HHHhc--------------cCChHHHHHHHHcCCHHHHHHhcC----CC-------Cc-----cchhHHHHHHHHhhcCC
Q 037562 432 LSYLS--------------DGTNDKVQAVIEAGVYPRLVELLG----HS-------SS-----SVLTPALRTIRNIVKGD 481 (670)
Q Consensus 432 L~~l~--------------~~~~~~~~~~~~~~~i~~L~~lL~----~~-------~~-----~v~~~a~~~L~~l~~~~ 481 (670)
+-.++ ...+...+.+.+.|++..++..+. .. ++ .....++++|-+.+..+
T Consensus 174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~ 253 (361)
T PF07814_consen 174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS 253 (361)
T ss_pred HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 33331 111112233555577888887765 11 11 13455778888887766
Q ss_pred chhhHHHHhC--CChHHHHHh-hccC--CchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHh-------h----
Q 037562 482 DFQTQCIINC--GALPYFLDM-LVHN--HEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLL-------Q---- 545 (670)
Q Consensus 482 ~~~~~~l~~~--~~~~~L~~~-l~~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll-------~---- 545 (670)
......+... +.+..+... +... ....+...++..+.|++-.++.....+...++...+..+. .
T Consensus 254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~ 333 (361)
T PF07814_consen 254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNY 333 (361)
T ss_pred ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccccc
Confidence 6555544432 233222222 2222 0334456788888888877766655555443322211111 1
Q ss_pred ---cCChhHHHHHHHHHHHhcCC
Q 037562 546 ---NTEFDTKKEAAWAISNATKF 565 (670)
Q Consensus 546 ---~~~~~v~~~a~~aL~~l~~~ 565 (670)
....+...-+.+++.|++..
T Consensus 334 ~~~~~~~D~~IL~Lg~LINL~E~ 356 (361)
T PF07814_consen 334 VPEESSFDILILALGLLINLVEH 356 (361)
T ss_pred ccccccchHHHHHHHhHHHheee
Confidence 12346777888888888875
No 265
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=92.88 E-value=3.9 Score=42.26 Aligned_cols=167 Identities=10% Similarity=0.085 Sum_probs=116.0
Q ss_pred hhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCc----cchhHHHHHHHHhhcCCch
Q 037562 408 PALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSS----SVLTPALRTIRNIVKGDDF 483 (670)
Q Consensus 408 ~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~----~v~~~a~~~L~~l~~~~~~ 483 (670)
.....+...+.+++...+..++..+..++.. ......++...++..+..++.+++. .+...++.++..+..+.-
T Consensus 83 ~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv- 160 (713)
T KOG2999|consen 83 HYAKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV- 160 (713)
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-
Confidence 3455677888888888888888888888754 5566778888999999999988654 355556666655544322
Q ss_pred hhHHHHhCCChHHHHHhhccCC-chhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHh
Q 037562 484 QTQCIINCGALPYFLDMLVHNH-EESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNA 562 (670)
Q Consensus 484 ~~~~l~~~~~~~~L~~~l~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 562 (670)
..-..+...++.....+.+-.. +..+-..|...+-++..+++...+.+.+.--+..|+..++..+..++..|...+..+
T Consensus 161 vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal 240 (713)
T KOG2999|consen 161 VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNAL 240 (713)
T ss_pred eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 1111122233333444432211 556777888888888888777777777877899999999999999999988888888
Q ss_pred cCCCCHHHHHHHHH
Q 037562 563 TKFGTHEQIKHLVR 576 (670)
Q Consensus 563 ~~~~~~~~~~~l~~ 576 (670)
...+.++.++.+.+
T Consensus 241 ~~~a~~~~R~~~~~ 254 (713)
T KOG2999|consen 241 FRKAPDDKRFEMAK 254 (713)
T ss_pred HhhCChHHHHHHHH
Confidence 88766665555443
No 266
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.87 E-value=17 Score=39.71 Aligned_cols=342 Identities=13% Similarity=0.111 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh--CCChHHHH
Q 037562 253 SLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVID--HGAVPIFV 330 (670)
Q Consensus 253 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~--~~~i~~L~ 330 (670)
-+++..++.+..-.+.... .+.. .-.-..++.++++.++.-|+..+++++.-+..+-.-..+.+.. ......+.
T Consensus 502 iiRRRVa~ilg~Wvsvq~~---~e~k-~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lf 577 (978)
T KOG1993|consen 502 IIRRRVAWILGQWVSVQQK---LELK-PLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLF 577 (978)
T ss_pred HHHHHHHHHHhhhhheech---HhHH-HHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHH
Confidence 3556666666665443111 1111 1134456778877744678888888888887743333333321 12233334
Q ss_pred HhhCC-CCHHHHHHHHHHHHHhhCCCchh-HHHHHhcCChHHHHHHh-cccCChhH-HHHHHHHHHhhhcCCCCCChhhh
Q 037562 331 KLLAS-PSVDVRKQTVWALGNVAGDSPRC-RDLVLSQGALIPLLAEL-NENANLSM-LRTATWTLFNFCRGKPQPPFNQV 406 (670)
Q Consensus 331 ~lL~~-~~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~~~i~~Ll~~l-~~~~~~~~-~~~a~~~L~~l~~~~~~~~~~~~ 406 (670)
.+++. +.-+.+...+..|+.+.....+. +.... .+-.++..+ .......+ +...+.+|.|+...-........
T Consensus 578 kll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~---~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~ 654 (978)
T KOG1993|consen 578 KLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYAS---TIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFY 654 (978)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHH---HHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccch
Confidence 44443 45566667777777766332211 11110 111222222 22333444 44667788888876544444444
Q ss_pred hhhHHHHHHhhccCCh---hHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhc-CCc
Q 037562 407 RPALPVLAQLIRSNDE---EVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVK-GDD 482 (670)
Q Consensus 407 ~~~i~~L~~lL~~~~~---~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~-~~~ 482 (670)
.-.+|.+....+-+.+ -..+.+...-.....+.+.....+. +.++.+...+....+..+ .++.++..-.- .+.
T Consensus 655 ~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~l~~~iE~ste~L~-t~l~Ii~sYilLd~~ 731 (978)
T KOG1993|consen 655 PFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLFPHLLYIIEQSTENLP-TVLMIISSYILLDNT 731 (978)
T ss_pred HHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHHHHHHHHHHhhhhhHH-HHHHHHHHHHhhccH
Confidence 4455555444432222 2333333333222223222222222 466777777765444332 23333332221 121
Q ss_pred hhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh--cCChhHHHHHHHHHH
Q 037562 483 FQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ--NTEFDTKKEAAWAIS 560 (670)
Q Consensus 483 ~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~--~~~~~v~~~a~~aL~ 560 (670)
.... -...|+++.+..++.+- ..+-....+.++..+...++ ........++++.+...+- .+.+.+...-...++
T Consensus 732 ~fl~-~y~~~i~k~~~~~l~dv-r~egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vva 808 (978)
T KOG1993|consen 732 VFLN-DYAFGIFKKLNDLLDDV-RNEGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVA 808 (978)
T ss_pred HHHH-HHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHH
Confidence 1111 12336777777777665 44555555666666555444 4555566778888776553 345677777788888
Q ss_pred HhcCCCCHHHHHHHHHc-CCcHHHHh--------hc-cCCChHHHHHHHHHHHHHHHh
Q 037562 561 NATKFGTHEQIKHLVRE-GCVKPLCD--------LL-LCADPKIVTVCLEGLENILKV 608 (670)
Q Consensus 561 ~l~~~~~~~~~~~l~~~-~~i~~L~~--------ll-~~~~~~v~~~a~~~l~~l~~~ 608 (670)
.++.. +++....+.+. .-.+.++. +. +-.+++-|+.-+-|+..++..
T Consensus 809 Ri~l~-n~~~~msvlqt~~~~d~~~~~li~~WI~~~~~I~~~k~rKl~~LalsSll~t 865 (978)
T KOG1993|consen 809 RISLR-NPSLFMSVLQTKNTYDILIAMLIGNWILLFDHINHPKDRKLNTLALSSLLRT 865 (978)
T ss_pred HHHhc-ChHHHHHHHHhhhhHHHHHHHHHHHHHHHcccCCCHHHhhHHHHHHHHHhcc
Confidence 87776 44544444432 22223331 11 223555555555555555543
No 267
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=92.85 E-value=6.2 Score=40.11 Aligned_cols=241 Identities=18% Similarity=0.218 Sum_probs=122.8
Q ss_pred hHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHh-hhcCCCCCCh
Q 037562 326 VPIFVKLLA-SPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFN-FCRGKPQPPF 403 (670)
Q Consensus 326 i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~-l~~~~~~~~~ 403 (670)
+..+++-+. +....+|..++--|+.-+. ++.++..+...|....+++.+.+..+..+...++.++.. ++.+......
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l 101 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL 101 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence 445555555 3556788888888887775 467899999999999999999666555455545444444 4444433333
Q ss_pred hhhhhhHHHHHHhhccC-ChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcC---------CCCccchhHHHHH
Q 037562 404 NQVRPALPVLAQLIRSN-DEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLG---------HSSSSVLTPALRT 473 (670)
Q Consensus 404 ~~~~~~i~~L~~lL~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~---------~~~~~v~~~a~~~ 473 (670)
.........+.+++... ...+....- .. .........+ +.+..+...+. .....-+..|+.+
T Consensus 102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~-~~~~lsk~~~-~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~ 173 (361)
T PF07814_consen 102 LLDRDSLRLLLKLLKVDKSLDVPSDSD------SS-RKKNLSKVQQ-KSRSLCKELLSSGSSWKSPKPPELSPQTLALLA 173 (361)
T ss_pred hhchhHHHHHHHHhccccccccccchh------hh-hhhhhhHHHH-HHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence 33345555556666611 000000000 00 0000000100 11122222221 1223455666666
Q ss_pred HHHhhc--------------CCchhhHHHHhCCChHHHHHhhcc----C------Cc-----hhHHHHHHHHHHHhhcCC
Q 037562 474 IRNIVK--------------GDDFQTQCIINCGALPYFLDMLVH----N------HE-----ESIKKEVSWIISNITCGN 524 (670)
Q Consensus 474 L~~l~~--------------~~~~~~~~l~~~~~~~~L~~~l~~----~------~~-----~~v~~~a~~~L~~l~~~~ 524 (670)
+-.++. ..+...+.+.+.|++..++..+.. . .+ ...-..+..+|-+.+..+
T Consensus 174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~ 253 (361)
T PF07814_consen 174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS 253 (361)
T ss_pred HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence 666631 011123445566788888888752 1 01 112233556666665555
Q ss_pred HHHHHHHHhc--CChHHHHHH-hh---cCChhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 037562 525 REQIQAVIDS--GLIGPIVNL-LQ---NTEFDTKKEAAWAISNATKFGTHEQIKHLVR 576 (670)
Q Consensus 525 ~~~~~~l~~~--~~i~~L~~l-l~---~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~ 576 (670)
.++..++... +.++.+... +. .....+...++..+.|++.+ ++.....+..
T Consensus 254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~-n~~~c~~~~s 310 (361)
T PF07814_consen 254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNN-NPSACEEFAS 310 (361)
T ss_pred ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCC-CccchHhhhh
Confidence 5555555432 233333322 22 23345567888999999886 4444444443
No 268
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=92.83 E-value=17 Score=39.49 Aligned_cols=281 Identities=14% Similarity=0.086 Sum_probs=157.5
Q ss_pred CCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhC--CCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHH
Q 037562 323 HGAVPIFVKLLAS--------PSVDVRKQTVWALGNVAG--DSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLF 392 (670)
Q Consensus 323 ~~~i~~L~~lL~~--------~~~~v~~~a~~~L~~l~~--~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~ 392 (670)
.|+++.+...+.. .+..-.+.|++.++++.. ..+....-+.+.-.++.++-.+ ++..--++..||..++
T Consensus 407 qgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f-~s~ygfL~Srace~is 485 (970)
T COG5656 407 QGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAF-RSNYGFLKSRACEFIS 485 (970)
T ss_pred hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhh-cCcccchHHHHHHHHH
Confidence 4788999888832 234455677777777764 2222222233333344555555 5555677889999999
Q ss_pred hhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcC---CCCccchhH
Q 037562 393 NFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLG---HSSSSVLTP 469 (670)
Q Consensus 393 ~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~---~~~~~v~~~ 469 (670)
.+..+- ........+.+.....+++++-.|+..|+-++..+..+. +....+...+.+.+.++|. .-+.++...
T Consensus 486 ~~eeDf--kd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~--q~h~k~sahVp~tmekLLsLSn~feiD~LS~ 561 (970)
T COG5656 486 TIEEDF--KDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE--QSHEKFSAHVPETMEKLLSLSNTFEIDPLSM 561 (970)
T ss_pred HHHHhc--ccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch--hhhHHHHhhhhHHHHHHHHhcccccchHHHH
Confidence 995543 333344567777788888888899999999998887654 2333344444444444443 323333333
Q ss_pred HHH-HHHHhhcCCchhhHHHHhC---CChHHHHHhhccCC-----chhHHHHHHHHHHHhhc------CCHHHHHHHHhc
Q 037562 470 ALR-TIRNIVKGDDFQTQCIINC---GALPYFLDMLVHNH-----EESIKKEVSWIISNITC------GNREQIQAVIDS 534 (670)
Q Consensus 470 a~~-~L~~l~~~~~~~~~~l~~~---~~~~~L~~~l~~~~-----~~~v~~~a~~~L~~l~~------~~~~~~~~l~~~ 534 (670)
+.. .+..++..-......++.. .++..-..++.+++ ..+-+..|.+.|..+.. ..+...+.+ +.
T Consensus 562 vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~l-e~ 640 (970)
T COG5656 562 VMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYL-EV 640 (970)
T ss_pred HHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHH-HH
Confidence 332 2233332211222222211 12222233333221 12345566666666543 234433333 33
Q ss_pred CChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCCh-HHHHHHHHHHHHHHHhhhhh
Q 037562 535 GLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADP-KIVTVCLEGLENILKVGVAE 612 (670)
Q Consensus 535 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~-~v~~~a~~~l~~l~~~~~~~ 612 (670)
...|..--++++.-.++-.+|+..+-...-. ..+.... -=|+.+.+.+++.+... .-...+..++.+++.++.+.
T Consensus 641 slypvi~Filkn~i~dfy~Ea~dildg~tf~-skeI~pi--mwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~e 716 (970)
T COG5656 641 SLYPVISFILKNEISDFYQEALDILDGYTFM-SKEIEPI--MWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTE 716 (970)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhhhHH-HHHhhhh--hhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccc
Confidence 4566666667777788888888888776553 2222221 22467777778877764 66677888999998887543
No 269
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=92.78 E-value=2.2 Score=44.18 Aligned_cols=242 Identities=12% Similarity=0.135 Sum_probs=138.2
Q ss_pred HHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCC
Q 037562 276 EVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSVDVRKQTVWALGNVAGD 354 (670)
Q Consensus 276 ~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~ 354 (670)
..+....+..|+.+++++| ++-|.....++.++-......|..+.. .+...+.+++.. ....-...++..++.+..+
T Consensus 128 ~~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~~~gI~elLeil~sii~g 205 (409)
T PF01603_consen 128 KYIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETERHNGIAELLEILGSIING 205 (409)
T ss_dssp TTS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS--STHHHHHHHHHHHHTT
T ss_pred HHcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcccccCHHHHHHHHHHHHhc
Confidence 3455567888999999999 999999999999987645555555543 445666666653 4445556778888888754
Q ss_pred Cc-hhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHH
Q 037562 355 SP-RCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALS 433 (670)
Q Consensus 355 ~~-~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~ 433 (670)
-+ ..++.... -....++-+.....-.........++..+...++.- ...++..+++.=-..++.-....+.-+.
T Consensus 206 f~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l----~~~~i~~llk~WP~t~s~Kev~FL~el~ 280 (409)
T PF01603_consen 206 FAVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSL----AEPVIKGLLKHWPKTNSQKEVLFLNELE 280 (409)
T ss_dssp --SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGG----HHHHHHHHHHHS-SS-HHHHHHHHHHHH
T ss_pred cCCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh----HHHHHHHHHHhCCCCCchhHHHHHHHHH
Confidence 22 22221111 011222333322222334456666666666554321 2333444444444556655555666666
Q ss_pred HhccCCh-HHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhC---CChHHHHHhhccC---C-
Q 037562 434 YLSDGTN-DKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINC---GALPYFLDMLVHN---H- 505 (670)
Q Consensus 434 ~l~~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~---~~~~~L~~~l~~~---~- 505 (670)
.+...-+ .....+. ..++..+..++++.+..|.+.|+..+. ++.... ++.. .+++.+...+... +
T Consensus 281 ~il~~~~~~~f~~i~-~~lf~~la~ci~S~h~qVAErAl~~w~-----n~~~~~-li~~~~~~i~p~i~~~L~~~~~~HW 353 (409)
T PF01603_consen 281 EILEVLPPEEFQKIM-VPLFKRLAKCISSPHFQVAERALYFWN-----NEYFLS-LISQNSRVILPIIFPALYRNSKNHW 353 (409)
T ss_dssp HHHTT--HHHHHHHH-HHHHHHHHHHHTSSSHHHHHHHHGGGG-----SHHHHH-HHHCTHHHHHHHHHHHHSSTTSS-S
T ss_pred HHHHhcCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHC-----CHHHHH-HHHhChHHHHHHHHHHHHHHHHHHh
Confidence 6665433 3333233 367788889999999999888886653 222222 2222 2566666666431 1
Q ss_pred chhHHHHHHHHHHHhhcCCHHHHHHH
Q 037562 506 EESIKKEVSWIISNITCGNREQIQAV 531 (670)
Q Consensus 506 ~~~v~~~a~~~L~~l~~~~~~~~~~l 531 (670)
+..++..|..++..+...+++....+
T Consensus 354 n~~Vr~~a~~vl~~l~~~d~~lf~~~ 379 (409)
T PF01603_consen 354 NQTVRNLAQNVLKILMEMDPKLFDKC 379 (409)
T ss_dssp STTHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 77899999999999987777654443
No 270
>PLN03150 hypothetical protein; Provisional
Probab=92.78 E-value=0.15 Score=56.07 Aligned_cols=104 Identities=13% Similarity=0.021 Sum_probs=62.7
Q ss_pred cceeeecccccccccccchhhhcccccceeccccccccceeccccccccccccccccccccccccccccccccccCCccc
Q 037562 73 LTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAF 152 (670)
Q Consensus 73 L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 152 (670)
+..|++.++. +...+ +..+..+++|+.|+++++.--..++ .....+++|+.|.++++.--..++. ...
T Consensus 420 v~~L~L~~n~-L~g~i-p~~i~~L~~L~~L~Ls~N~l~g~iP--------~~~~~l~~L~~LdLs~N~lsg~iP~--~l~ 487 (623)
T PLN03150 420 IDGLGLDNQG-LRGFI-PNDISKLRHLQSINLSGNSIRGNIP--------PSLGSITSLEVLDLSYNSFNGSIPE--SLG 487 (623)
T ss_pred EEEEECCCCC-ccccC-CHHHhCCCCCCEEECCCCcccCcCC--------hHHhCCCCCCEEECCCCCCCCCCch--HHh
Confidence 6777777763 33322 3456778899999988875222222 1234578888888887643333333 245
Q ss_pred CCCCccEEeEecCCCccccccCCcC-CCCccceeeee
Q 037562 153 TFPSLEILVVNYCPNMKIFSGGELS-TPNLHKVQLSR 188 (670)
Q Consensus 153 ~~~~L~~L~i~~C~~l~~~p~~~~~-~~~L~~l~i~~ 188 (670)
.+++|+.|++.++.--..+|..... ..++..+.+.+
T Consensus 488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~ 524 (623)
T PLN03150 488 QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTD 524 (623)
T ss_pred cCCCCCEEECcCCcccccCChHHhhccccCceEEecC
Confidence 6788999999887644466765432 23444555543
No 271
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=92.43 E-value=11 Score=38.52 Aligned_cols=189 Identities=14% Similarity=0.126 Sum_probs=118.3
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHcCCC---hhhHHHHHhCCChHHHHHhhCC-------CCHHHHHHHHHHHHHhhCC
Q 037562 285 RFVEFLMRQDYPQLQFKAAWALTNIASGT---SENTKVVIDHGAVPIFVKLLAS-------PSVDVRKQTVWALGNVAGD 354 (670)
Q Consensus 285 ~L~~ll~~~~~~~v~~~a~~~L~~l~~~~---~~~~~~i~~~~~i~~L~~lL~~-------~~~~v~~~a~~~L~~l~~~ 354 (670)
.+..+....+ ++-|.+|....+.+...+ ..+++.+.++=+.+.+-+++.+ ++.-.+..++..|..+|.+
T Consensus 15 ~~~~L~~~k~-D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~ 93 (698)
T KOG2611|consen 15 DCLKLLKGKR-DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV 93 (698)
T ss_pred hHHHHhcccC-hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence 3556666666 688888888888888743 4566778888788888888865 3445667788888888865
Q ss_pred Cchh-HHHHHhcCChHHHHHHhcccCChh------HHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHH-
Q 037562 355 SPRC-RDLVLSQGALIPLLAELNENANLS------MLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLT- 426 (670)
Q Consensus 355 ~~~~-~~~i~~~~~i~~Ll~~l~~~~~~~------~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~- 426 (670)
..-. .+.+++ .||.++..+.+..|++ +...+..+|..++...+........|+++.+.++-.-++...-.
T Consensus 94 pElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~a 171 (698)
T KOG2611|consen 94 PELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMA 171 (698)
T ss_pred hhhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHH
Confidence 3211 122333 5899999997666665 77788999999998877777777799999998876644322211
Q ss_pred HHHHHHHHhc---cCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhh
Q 037562 427 DACWALSYLS---DGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIV 478 (670)
Q Consensus 427 ~al~~L~~l~---~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 478 (670)
-++.++.-.. ..-++....+.. ++..+..-+...+...+-..|..|..+.
T Consensus 172 lal~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl 224 (698)
T KOG2611|consen 172 LALKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVL 224 (698)
T ss_pred HHHHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 1222221111 111111111221 2344444444455567778888887554
No 272
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=92.28 E-value=4.1 Score=45.22 Aligned_cols=150 Identities=14% Similarity=0.102 Sum_probs=82.9
Q ss_pred ChhHHHHHHHHHHhhhcCC-C---------CCChhhhhhhHHHHHHhhc----cCChhHHHHHHHHHHHhccCChHHHHH
Q 037562 380 NLSMLRTATWTLFNFCRGK-P---------QPPFNQVRPALPVLAQLIR----SNDEEVLTDACWALSYLSDGTNDKVQA 445 (670)
Q Consensus 380 ~~~~~~~a~~~L~~l~~~~-~---------~~~~~~~~~~i~~L~~lL~----~~~~~v~~~al~~L~~l~~~~~~~~~~ 445 (670)
++.++..|+.+++.+.... . ..........++.+...+. ..+..-+..++.+|+|+...
T Consensus 448 ~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~------- 520 (618)
T PF01347_consen 448 SPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP------- 520 (618)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-------
T ss_pred ChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-------
Confidence 4456666666665554322 1 1122222444555554444 56778888999999998632
Q ss_pred HHHcCCHHHHHHhcCCC---CccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCC-chhHHHHHHHHHHHhh
Q 037562 446 VIEAGVYPRLVELLGHS---SSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNH-EESIKKEVSWIISNIT 521 (670)
Q Consensus 446 ~~~~~~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~-~~~v~~~a~~~L~~l~ 521 (670)
..++.+..++... ...+|..|++++..++...+.. +.+.++.++.+.. +.++|..|..+|...
T Consensus 521 ----~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~n~~e~~EvRiaA~~~lm~~- 587 (618)
T PF01347_consen 521 ----ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFMNTTEDPEVRIAAYLILMRC- 587 (618)
T ss_dssp ----GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH-TTS-HHHHHHHHHHHHHT-
T ss_pred ----hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhcCCCCChhHHHHHHHHHHhc-
Confidence 3567778888776 4568999999999887655433 3345666665432 778998887776554
Q ss_pred cCCHHHHHHHHhcCChHHHHHHhh-cCChhHHHHHHHH
Q 037562 522 CGNREQIQAVIDSGLIGPIVNLLQ-NTEFDTKKEAAWA 558 (670)
Q Consensus 522 ~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~a 558 (670)
..+.. .+..+...+. .++.+|...+...
T Consensus 588 ~P~~~---------~l~~i~~~l~~E~~~QV~sfv~S~ 616 (618)
T PF01347_consen 588 NPSPS---------VLQRIAQSLWNEPSNQVASFVYSH 616 (618)
T ss_dssp ---HH---------HHHHHHHHHTT-S-HHHHHHHHHH
T ss_pred CCCHH---------HHHHHHHHHhhCchHHHHHHHHHh
Confidence 22222 3344555555 3445555544433
No 273
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=92.22 E-value=14 Score=37.11 Aligned_cols=159 Identities=16% Similarity=0.152 Sum_probs=110.5
Q ss_pred HHHHHHhcCCCCccchhHHHHHHHHhhc-CCchhhHHHHhC-CC-hHHHHHhhccC---C-c--------hhHHHHHHHH
Q 037562 452 YPRLVELLGHSSSSVLTPALRTIRNIVK-GDDFQTQCIINC-GA-LPYFLDMLVHN---H-E--------ESIKKEVSWI 516 (670)
Q Consensus 452 i~~L~~lL~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~-~~-~~~L~~~l~~~---~-~--------~~v~~~a~~~ 516 (670)
+..+.+.|.+....+...+++.+..++. .....+..+... ++ .+.+..++... . + +.+|......
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 6788889999888888899999999998 554556656533 22 23444444221 0 1 2788887766
Q ss_pred HHHhhc-CCHHHHHHHH-hcCChHHHHHHhhcCChhHHHHHHHHHHH-hcCCC--CHHHHHHHHHcCCcHHHHhhccCCC
Q 037562 517 ISNITC-GNREQIQAVI-DSGLIGPIVNLLQNTEFDTKKEAAWAISN-ATKFG--THEQIKHLVREGCVKPLCDLLLCAD 591 (670)
Q Consensus 517 L~~l~~-~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~~-l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~ 591 (670)
+..+.. +++..+..++ +.+.+..+..-+..+++++......++.. +.... .......+.....+..|..+....+
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~ 217 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG 217 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence 666555 5666666666 45668888888888888999999999985 33321 2334444556668889999888777
Q ss_pred h----HHHHHHHHHHHHHHHhhh
Q 037562 592 P----KIVTVCLEGLENILKVGV 610 (670)
Q Consensus 592 ~----~v~~~a~~~l~~l~~~~~ 610 (670)
+ .++..+-..|..++....
T Consensus 218 ~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 218 EDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred CcccchHHHHHHHHHHHHhcCCC
Confidence 7 888888888888775443
No 274
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.12 E-value=5.1 Score=42.78 Aligned_cols=192 Identities=15% Similarity=0.039 Sum_probs=121.5
Q ss_pred HHHHHhcCCCCccchhHHHHHHHHhhcCC-chh----hHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHH
Q 037562 453 PRLVELLGHSSSSVLTPALRTIRNIVKGD-DFQ----TQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQ 527 (670)
Q Consensus 453 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~----~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~ 527 (670)
+.+.+-|+-.+..||.+|+..+-++---. ++. ...+++ +-...+.++|.++ -+.||..|...++.+....-+.
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~-~p~VRS~a~~gv~k~~s~fWe~ 254 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDP-YPMVRSTAILGVCKITSKFWEM 254 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHHHH
Confidence 56667778889999999999988875322 221 222332 4577899999999 9999999999988876521111
Q ss_pred HHHHHhcCChHHHHHHhh-cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHH
Q 037562 528 IQAVIDSGLIGPIVNLLQ-NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENIL 606 (670)
Q Consensus 528 ~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~ 606 (670)
+..-+-..++..+.+-+. +...+||......|..+..+ |..... .+. +++.+-..+.+....||.++...+..+=
T Consensus 255 iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n--p~sh~~-le~-~Lpal~~~l~D~se~VRvA~vd~ll~ik 330 (1005)
T KOG1949|consen 255 IPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN--PLSHPL-LEQ-LLPALRYSLHDNSEKVRVAFVDMLLKIK 330 (1005)
T ss_pred cCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC--ccchhH-HHH-HHHhcchhhhccchhHHHHHHHHHHHHH
Confidence 110011112333333333 44568999999998888874 222222 221 5667777888899999999888877643
Q ss_pred HhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCcc
Q 037562 607 KVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYWSSRV 665 (670)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~~~~~ 665 (670)
.. . +.+...-+-.-..|..|..++-+.-+..+.-++..|||...
T Consensus 331 ~v-r--------------a~~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k 374 (1005)
T KOG1949|consen 331 AV-R--------------AAKFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVNK 374 (1005)
T ss_pred hh-h--------------hhhhhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCCC
Confidence 21 1 12222222223446777777777778888888888887654
No 275
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=92.04 E-value=7.6 Score=37.29 Aligned_cols=214 Identities=14% Similarity=0.114 Sum_probs=121.8
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHH
Q 037562 286 FVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS--PSVDVRKQTVWALGNVAGDSPRCRDLVL 363 (670)
Q Consensus 286 L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 363 (670)
|=..|.+++ +.+|..|...|+.+...-+... ....-+..|+++..+ .|......++.++..+.....-...
T Consensus 4 Lg~~Ltsed-~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~--- 76 (262)
T PF14500_consen 4 LGEYLTSED-PIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPE--- 76 (262)
T ss_pred hhhhhCCCC-HHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChh---
Confidence 345677888 8999999999998876433221 222234555554433 4555555557777666632221111
Q ss_pred hcCChHHHHHHhccc-----CChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccC-ChhHHHHHHHHHHHhcc
Q 037562 364 SQGALIPLLAELNEN-----ANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSN-DEEVLTDACWALSYLSD 437 (670)
Q Consensus 364 ~~~~i~~Ll~~l~~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~al~~L~~l~~ 437 (670)
....+++.+.+. .....|..+...+..+...............+..+++.+..+ ||.-...+...+..+..
T Consensus 77 ---~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~ 153 (262)
T PF14500_consen 77 ---SAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQ 153 (262)
T ss_pred ---hHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 133333333222 223556677777777776542222222356677777777754 78877777777776654
Q ss_pred CChHHHHHHHHcCCHHHHHHhcC---------CC-Cc--cchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCC
Q 037562 438 GTNDKVQAVIEAGVYPRLVELLG---------HS-SS--SVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNH 505 (670)
Q Consensus 438 ~~~~~~~~~~~~~~i~~L~~lL~---------~~-~~--~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~ 505 (670)
.-+. ....+-+...+. .+ ++ -.+..-...|.+.....+... .-.+|.|++-|.++
T Consensus 154 ~~~~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa-----~~~~p~LleKL~s~- 220 (262)
T PF14500_consen 154 EFDI-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA-----PFAFPLLLEKLDST- 220 (262)
T ss_pred hccc-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH-----HHHHHHHHHHHcCC-
Confidence 4331 122223333322 11 22 234444455555544444333 24789999999999
Q ss_pred chhHHHHHHHHHHHhhc
Q 037562 506 EESIKKEVSWIISNITC 522 (670)
Q Consensus 506 ~~~v~~~a~~~L~~l~~ 522 (670)
.+.++..+..++...+.
T Consensus 221 ~~~~K~D~L~tL~~c~~ 237 (262)
T PF14500_consen 221 SPSVKLDSLQTLKACIE 237 (262)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 88999999999998876
No 276
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=91.91 E-value=1.6 Score=46.76 Aligned_cols=234 Identities=15% Similarity=0.131 Sum_probs=138.4
Q ss_pred hhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCH
Q 037562 204 TIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVV 283 (670)
Q Consensus 204 ~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l 283 (670)
..+.-|.+.|.++.-+-..++.+. ..+|.+++.+.... .+-..+-.+..++... + ......-++
T Consensus 288 ~qKs~Flk~Ls~~ip~fp~rv~~~----------kiLP~L~~el~n~~--~vp~~LP~v~~i~~~~--s--~~~~~~~~~ 351 (700)
T KOG2137|consen 288 SQKSSFLKGLSKLIPTFPARVLFQ----------KILPTLVAELVNTK--MVPIVLPLVLLIAEGL--S--QNEFGPKML 351 (700)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHH----------hhhhHHHHHhcccc--ccccccchhhhhhhcc--c--hhhhhhhhh
Confidence 355666777766666666665555 23677877774322 1211222222222221 1 122233467
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH
Q 037562 284 PRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVL 363 (670)
Q Consensus 284 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 363 (670)
|.|...++.++..++..-.+.-+.-|.. +....-+...+++.|..-+++.+..+++.++..+..++..-+. .++
T Consensus 352 p~l~pi~~~~~~~~~~l~i~e~mdlL~~---Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~v 425 (700)
T KOG2137|consen 352 PALKPIYSASDPKQALLFILENMDLLKE---KTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFV 425 (700)
T ss_pred HHHHHHhccCCcccchhhHHhhHHHHHh---hCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHH
Confidence 7777777754422333222222211221 2222233446788888899999999999999999999854331 223
Q ss_pred hcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHH
Q 037562 364 SQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKV 443 (670)
Q Consensus 364 ~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~ 443 (670)
..-++|.+-.+.....+..++.+++-|+..+... .........+..+.+..+..++.+....+.+..++.......
T Consensus 426 k~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~---lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g- 501 (700)
T KOG2137|consen 426 KQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR---LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG- 501 (700)
T ss_pred HHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-
Confidence 3345777777766778889999999999998832 122222344455566666788999888888888877443322
Q ss_pred HHHHHcCCHHHHHHhcCCCC
Q 037562 444 QAVIEAGVYPRLVELLGHSS 463 (670)
Q Consensus 444 ~~~~~~~~i~~L~~lL~~~~ 463 (670)
..+....+++.++.+...+.
T Consensus 502 ~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 502 VEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred eeeehhhhhhhhhhhhhccc
Confidence 23444577888887776654
No 277
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=91.89 E-value=0.88 Score=41.36 Aligned_cols=111 Identities=14% Similarity=0.157 Sum_probs=76.1
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC--------CCHHHHHHHHHHHHHHc
Q 037562 239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQ--------DYPQLQFKAAWALTNIA 310 (670)
Q Consensus 239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~--------~~~~v~~~a~~~L~~l~ 310 (670)
....+++.+++..... ..+..|..........-++.+++.|++..|+.+|..- ...+....+++|+..+.
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 3456777776554432 3444444444433233467888889999998877531 22578899999999998
Q ss_pred CCChhhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 037562 311 SGTSENTKVVID-HGAVPIFVKLLASPSVDVRKQTVWALGNVA 352 (670)
Q Consensus 311 ~~~~~~~~~i~~-~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 352 (670)
. +......++. .+++..++..|.+++..++..++..|..+|
T Consensus 145 n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 N-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp S-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred c-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 8 5565666664 689999999999999999999999999886
No 278
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=91.76 E-value=15 Score=38.61 Aligned_cols=107 Identities=20% Similarity=0.289 Sum_probs=77.6
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT 317 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 317 (670)
+.+.-++..+.+.+-.++..+++.|+.+... -..++..+-+|.+..+.+-+-+.. +.||..|+.+|+.+-.......
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~--v~eIDe~l~N~L~ekl~~R~~DRE-~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDV--VREIDEVLANGLLEKLSERLFDRE-KAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHhccCChH
Confidence 4466777777889999999999999888544 556677788888888888777777 7999999999999875322221
Q ss_pred HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC
Q 037562 318 KVVIDHGAVPIFVKLLAS-PSVDVRKQTVWALGNVAGDS 355 (670)
Q Consensus 318 ~~i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~ 355 (670)
.. ....|...++. |+.++|..| |.|+..++
T Consensus 168 n~-----~~n~l~~~vqnDPS~EVRr~a---llni~vdn 198 (885)
T COG5218 168 NR-----IVNLLKDIVQNDPSDEVRRLA---LLNISVDN 198 (885)
T ss_pred HH-----HHHHHHHHHhcCcHHHHHHHH---HHHeeeCC
Confidence 11 23456666654 888999874 55665443
No 279
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=91.71 E-value=0.88 Score=41.13 Aligned_cols=127 Identities=15% Similarity=0.104 Sum_probs=79.1
Q ss_pred hCCCCHHHHHHHHHHHHHhhCCCchhHHHHH---------------hcCChHHHHHHhcc-----cCChhHHHHHHHHHH
Q 037562 333 LASPSVDVRKQTVWALGNVAGDSPRCRDLVL---------------SQGALIPLLAELNE-----NANLSMLRTATWTLF 392 (670)
Q Consensus 333 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~---------------~~~~i~~Ll~~l~~-----~~~~~~~~~a~~~L~ 392 (670)
+.+++......++..|+|++......+..+- +...+..|+..+.+ .....-..+.+.+++
T Consensus 4 i~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~ 83 (192)
T PF04063_consen 4 ITDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA 83 (192)
T ss_pred ecCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence 3345556777888899999876554432221 11235666666644 123455678999999
Q ss_pred hhhcCCCCCChhhh--hhh--HHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHc---CCHHHHHHhcC
Q 037562 393 NFCRGKPQPPFNQV--RPA--LPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEA---GVYPRLVELLG 460 (670)
Q Consensus 393 ~l~~~~~~~~~~~~--~~~--i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~i~~L~~lL~ 460 (670)
|++.....+..... .+. +..|+.++++.+.--|.-++.++.|++-..+.. ..++.. ++++.++.-|.
T Consensus 84 NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 84 NLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HhcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhcc
Confidence 99988644443333 233 788888888887777788999999999664433 333332 34444444443
No 280
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=91.64 E-value=3.6 Score=36.75 Aligned_cols=145 Identities=15% Similarity=0.183 Sum_probs=89.8
Q ss_pred cchhHHHHHHHHhhcCCchh-----hHHHHh------CCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHh
Q 037562 465 SVLTPALRTIRNIVKGDDFQ-----TQCIIN------CGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVID 533 (670)
Q Consensus 465 ~v~~~a~~~L~~l~~~~~~~-----~~~l~~------~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~ 533 (670)
++|..|+.+|..++...+.. -..++- .+.-+.|+..+-.++++.+|..|+.++..+..+...+....-+
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 36778888888887752211 111221 2233445555444449999999999999998876554443332
Q ss_pred cC-------------------ChHHHHHHhhc-CChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChH
Q 037562 534 SG-------------------LIGPIVNLLQN-TEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPK 593 (670)
Q Consensus 534 ~~-------------------~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 593 (670)
.+ +-..|+..+.. .+..+....+.++..+......+..+.=.-...+..+..++.+.|++
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 11 22344445553 46778889999999998874333222111112455566677889999
Q ss_pred HHHHHHHHHHHHHHhh
Q 037562 594 IVTVCLEGLENILKVG 609 (670)
Q Consensus 594 v~~~a~~~l~~l~~~~ 609 (670)
++..++.+++.++...
T Consensus 161 v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 9999999999887543
No 281
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=91.61 E-value=5.6 Score=44.16 Aligned_cols=199 Identities=17% Similarity=0.118 Sum_probs=110.0
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhC----
Q 037562 282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS----PSVDVRKQTVWALGNVAG---- 353 (670)
Q Consensus 282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~---- 353 (670)
.+..+.+++.+..- . ...|+..+..+.......... .+..+..+++. .++.++..|+-+++.+..
T Consensus 396 av~~i~~~I~~~~~-~-~~ea~~~l~~l~~~~~~Pt~e-----~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~ 468 (618)
T PF01347_consen 396 AVKFIKDLIKSKKL-T-DDEAAQLLASLPFHVRRPTEE-----LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV 468 (618)
T ss_dssp HHHHHHHHHHTT-S---HHHHHHHHHHHHHT-----HH-----HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCC-C-HHHHHHHHHHHHhhcCCCCHH-----HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence 35566777776541 2 222444454444322122222 34566666664 567788888888887762
Q ss_pred CC-----chhHHHHHhcCChHHHHHHhc---ccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccC---Ch
Q 037562 354 DS-----PRCRDLVLSQGALIPLLAELN---ENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSN---DE 422 (670)
Q Consensus 354 ~~-----~~~~~~i~~~~~i~~Ll~~l~---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~---~~ 422 (670)
.. ............++.+...+. ...+.+-+..++.+|.|+.. ...++.+...+... +.
T Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~ 538 (618)
T PF01347_consen 469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPH 538 (618)
T ss_dssp T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-H
T ss_pred cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccch
Confidence 21 000011112234666666664 34455777789999999975 34778888888766 68
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCC--CccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHh
Q 037562 423 EVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHS--SSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDM 500 (670)
Q Consensus 423 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~ 500 (670)
.+|..|++++..++...+.... +.+.++..+. +.++|..|+.+|... +|.. ..+..+...
T Consensus 539 ~~R~~Ai~Alr~~~~~~~~~v~--------~~l~~I~~n~~e~~EvRiaA~~~lm~~---~P~~-------~~l~~i~~~ 600 (618)
T PF01347_consen 539 FIRVAAIQALRRLAKHCPEKVR--------EILLPIFMNTTEDPEVRIAAYLILMRC---NPSP-------SVLQRIAQS 600 (618)
T ss_dssp HHHHHHHHTTTTGGGT-HHHHH--------HHHHHHHH-TTS-HHHHHHHHHHHHHT------H-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHH--------HHHHHHhcCCCCChhHHHHHHHHHHhc---CCCH-------HHHHHHHHH
Confidence 8999999999998776664433 5666776653 456888887666432 2221 235566777
Q ss_pred hccCCchhHHHHHHH
Q 037562 501 LVHNHEESIKKEVSW 515 (670)
Q Consensus 501 l~~~~~~~v~~~a~~ 515 (670)
+..+++..|......
T Consensus 601 l~~E~~~QV~sfv~S 615 (618)
T PF01347_consen 601 LWNEPSNQVASFVYS 615 (618)
T ss_dssp HTT-S-HHHHHHHHH
T ss_pred HhhCchHHHHHHHHH
Confidence 776656666655443
No 282
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=91.59 E-value=13 Score=37.69 Aligned_cols=215 Identities=11% Similarity=0.129 Sum_probs=111.4
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCC-----ccchhHHHHHHHHhhcCCc--------hhhHHHH
Q 037562 423 EVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSS-----SSVLTPALRTIRNIVKGDD--------FQTQCII 489 (670)
Q Consensus 423 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~-----~~v~~~a~~~L~~l~~~~~--------~~~~~l~ 489 (670)
.++..++..+...+...++....++. .++..+..+|.+-. ..+...|+..|..++.... .....++
T Consensus 111 kvK~~i~~~~~ly~~kY~e~f~~~l~-~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~~~~~~lf~~~~~L~~Ii 189 (370)
T PF08506_consen 111 KVKAWICENLNLYAEKYEEEFEPFLP-TFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAESPHHKNLFENKPHLQQII 189 (370)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTSHHHHTTT-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcchhHHHHhCCHHHHHHHH
Confidence 45566666666655444444443333 45566666665422 2345556666666554211 1112222
Q ss_pred hC------------------CChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh---cCC
Q 037562 490 NC------------------GALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ---NTE 548 (670)
Q Consensus 490 ~~------------------~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~---~~~ 548 (670)
+. +-.+.+-.-+...+...-|..|+..+..++...+.....++. +.+..++.-.. +.+
T Consensus 190 e~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~~ 268 (370)
T PF08506_consen 190 EKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSNN 268 (370)
T ss_dssp HHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT-
T ss_pred HHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCccc
Confidence 21 112222222332213456778888888887643333322221 12222222111 346
Q ss_pred hhHHHHHHHHHHHhcCCCCH-----------HHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCC
Q 037562 549 FDTKKEAAWAISNATKFGTH-----------EQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGT 617 (670)
Q Consensus 549 ~~v~~~a~~aL~~l~~~~~~-----------~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~ 617 (670)
+.-+..|+..++.++..+.. -....+....+++.|. --.+..|-++..|++.+..+-..-+
T Consensus 269 w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~------- 340 (370)
T PF08506_consen 269 WRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP------- 340 (370)
T ss_dssp HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS--------
T ss_pred HHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC-------
Confidence 78889999999999887521 0345566666777776 2234566788888877765322111
Q ss_pred CCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHH
Q 037562 618 AVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEIL 657 (670)
Q Consensus 618 ~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l 657 (670)
.+.+ .+.++.+...+.+++.-|+.+|+..|
T Consensus 341 --------~~~l--~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 341 --------KEQL--LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp --------HHHH--HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred --------HHHH--HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 1122 23578888888999999999988654
No 283
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=91.45 E-value=3 Score=34.32 Aligned_cols=101 Identities=14% Similarity=0.169 Sum_probs=65.8
Q ss_pred CChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHH
Q 037562 547 TEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYA 626 (670)
Q Consensus 547 ~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 626 (670)
.+...-.....-|++++.. ++..... +.+.|.+=|++.++.|+.+++.+|..++..+...- ..
T Consensus 13 d~~p~pgy~~~Eia~~t~~-s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f-----------~~ 75 (122)
T cd03572 13 DDEPTPGYLYEEIAKLTRK-SVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDF-----------KR 75 (122)
T ss_pred CCCCCchHHHHHHHHHHHc-CHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHH-----------HH
Confidence 3333333444455555554 3333333 56778888888999999999999999998765321 22
Q ss_pred HHHHHhchHHHHHHhhc--------CCCHHHHHHHHHHHHHhcCCc
Q 037562 627 QLVEEAEGLEKIENLQS--------HDDNGISEKAVEILETYWSSR 664 (670)
Q Consensus 627 ~~~~~~g~~~~l~~L~~--------~~~~~v~~~a~~~l~~~~~~~ 664 (670)
..-.....|..+.++.. ..+..|+..|..++.-+|+++
T Consensus 76 ~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~~ 121 (122)
T cd03572 76 ELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFSYS 121 (122)
T ss_pred HHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhccC
Confidence 33334444555665544 235579999999999999876
No 284
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=91.31 E-value=2.1 Score=38.66 Aligned_cols=114 Identities=14% Similarity=0.130 Sum_probs=75.9
Q ss_pred cCCCCccchhHHHHHHHHhhcCCchhhHHHHh----------------CCChHHHHHhhccCC-----chhHHHHHHHHH
Q 037562 459 LGHSSSSVLTPALRTIRNIVKGDDFQTQCIIN----------------CGALPYFLDMLVHNH-----EESIKKEVSWII 517 (670)
Q Consensus 459 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~----------------~~~~~~L~~~l~~~~-----~~~v~~~a~~~L 517 (670)
+.+++......++..|+|++..... +..+++ ...+..|+..+..+. ...--...+.++
T Consensus 4 i~~~~~~~adl~~MLLsNlT~~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl 82 (192)
T PF04063_consen 4 ITDPKSPLADLACMLLSNLTRSDSG-CEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVL 82 (192)
T ss_pred ecCCCcchHHHHHHHHHHhccchHH-HHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHH
Confidence 3455566777888899999874433 332332 124566777665511 334456788899
Q ss_pred HHhhcCCHHHHHHHHhc--CC--hHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 037562 518 SNITCGNREQIQAVIDS--GL--IGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVR 576 (670)
Q Consensus 518 ~~l~~~~~~~~~~l~~~--~~--i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~ 576 (670)
.|++.. ++.++.+++. +. +..|+..+++.+..-|.-++.+|.|++.. .+....+..
T Consensus 83 ~NlS~~-~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd--~~~H~~LL~ 142 (192)
T PF04063_consen 83 ANLSQL-PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD--TDSHEWLLS 142 (192)
T ss_pred HHhcCC-HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc--HhHHHHhcC
Confidence 999664 7777777753 33 77888888888778888999999999984 344455443
No 285
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.27 E-value=4.4 Score=44.37 Aligned_cols=318 Identities=16% Similarity=0.109 Sum_probs=156.5
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHH------Hh
Q 037562 249 SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVV------ID 322 (670)
Q Consensus 249 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i------~~ 322 (670)
-+|.-+...++..++.++.+ ......+++.|++..|+..=.- +..-.-...||..+.. .....+.+ +-
T Consensus 364 ~~d~~l~~~~~k~~~~l~~h--~kfa~~fv~~~gi~kll~vpr~---s~~~~g~s~cly~~~~-~q~~mervc~~p~~v~ 437 (1516)
T KOG1832|consen 364 LDDSPLLPDVMKLICALAAH--RKFAAMFVERRGILKLLAVPRV---SETFYGLSSCLYTIGS-LQGIMERVCALPLVVI 437 (1516)
T ss_pred cccccccHHHHHHHHHHHHh--hHHHHHHHHhhhhHHHhcCCCc---hhhhhhHHHHHHHHhh-hhhHHHHHhhccHHHH
Confidence 35566778889999998887 5777888888888777664322 2333344445555554 11111111 11
Q ss_pred CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc-------cC-----------ChhHH
Q 037562 323 HGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE-------NA-----------NLSML 384 (670)
Q Consensus 323 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~-------~~-----------~~~~~ 384 (670)
..++..-+.++.-....-+.++...+..-... -..-+.+-....+..|+.++.. +. +.+.-
T Consensus 438 ~~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~f-rail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~ 516 (1516)
T KOG1832|consen 438 HQVVKLAIELLDCSQDQARKNSALFFAAAFVF-RAILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSKQMA 516 (1516)
T ss_pred HHHHHHHHHHHhcchhhccchHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhhhhh
Confidence 23344445555543322222222211111000 0011222233445555555521 11 11233
Q ss_pred HHHHHHHHhhhcCC-----CC-CChhhhhhhHHHHHHhhccCC------hhHHHHHHHHHHHhccCCh-------HHHHH
Q 037562 385 RTATWTLFNFCRGK-----PQ-PPFNQVRPALPVLAQLIRSND------EEVLTDACWALSYLSDGTN-------DKVQA 445 (670)
Q Consensus 385 ~~a~~~L~~l~~~~-----~~-~~~~~~~~~i~~L~~lL~~~~------~~v~~~al~~L~~l~~~~~-------~~~~~ 445 (670)
...|.+|....... .+ .......+..+..++-+...+ .+..+.+++-+..+....+ ...+.
T Consensus 517 ~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aen 596 (1516)
T KOG1832|consen 517 FHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAEN 596 (1516)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHH
Confidence 35555555433322 00 011111222222222222111 1222333333333322222 23445
Q ss_pred HHHcCCHHHHHHhcCC-CCc-------cchhHHHHHHHHhhcCCchhhHHHHhC--------CChHHHHHhhcc---CCc
Q 037562 446 VIEAGVYPRLVELLGH-SSS-------SVLTPALRTIRNIVKGDDFQTQCIINC--------GALPYFLDMLVH---NHE 506 (670)
Q Consensus 446 ~~~~~~i~~L~~lL~~-~~~-------~v~~~a~~~L~~l~~~~~~~~~~l~~~--------~~~~~L~~~l~~---~~~ 506 (670)
+.+.+.+..++.+.+. .++ +....|+.+|.-+.. -+.....++.+ .++..+++.-.. ..+
T Consensus 597 flkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~-iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~D 675 (1516)
T KOG1832|consen 597 FLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTS-IPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVD 675 (1516)
T ss_pred HHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEe-cchHHHHHHHHHhhcccccCceEEEeecccccccccC
Confidence 6777888888887764 233 234556666655544 23333334321 244444444322 127
Q ss_pred hhHHHHHHHHHHHhhcCCHHH-----------------------------------HHHHHhcCChHHHHHHhhcCC---
Q 037562 507 ESIKKEVSWIISNITCGNREQ-----------------------------------IQAVIDSGLIGPIVNLLQNTE--- 548 (670)
Q Consensus 507 ~~v~~~a~~~L~~l~~~~~~~-----------------------------------~~~l~~~~~i~~L~~ll~~~~--- 548 (670)
++++..|..++.|+....|+. ...+...++|..|+.+++...
T Consensus 676 pei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t 755 (1516)
T KOG1832|consen 676 PEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPT 755 (1516)
T ss_pred HHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCC
Confidence 899999999999986533211 112234678999999998544
Q ss_pred --hhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 037562 549 --FDTKKEAAWAISNATKFGTHEQIKHLVR 576 (670)
Q Consensus 549 --~~v~~~a~~aL~~l~~~~~~~~~~~l~~ 576 (670)
..+|..|+.+|.-++.. +..++.+..
T Consensus 756 ~aD~IRalAc~~L~GLaR~--~tVrQIltK 783 (1516)
T KOG1832|consen 756 TADCIRALACRVLLGLARD--DTVRQILTK 783 (1516)
T ss_pred cHHHHHHHHHHHHhccccC--cHHHHHHHh
Confidence 46899999999999994 455555444
No 286
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.26 E-value=0.78 Score=43.72 Aligned_cols=139 Identities=11% Similarity=0.140 Sum_probs=95.3
Q ss_pred HHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHH
Q 037562 452 YPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAV 531 (670)
Q Consensus 452 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l 531 (670)
+...+..|.+.+|.....++..|..++...++.....+. .++-.+++-+++. ...|-+.|+.+++.+.......+..
T Consensus 90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~- 166 (334)
T KOG2933|consen 90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQ- 166 (334)
T ss_pred HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 345667788889999999999999998766543332222 3555666667777 8889999999999997643333322
Q ss_pred HhcCChHHHHHH-hh---cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHH
Q 037562 532 IDSGLIGPIVNL-LQ---NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENI 605 (670)
Q Consensus 532 ~~~~~i~~L~~l-l~---~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l 605 (670)
-+..++.. +. ..+.-++..|-.||..+..+..|.. +++.|+..+.+.++.++..+..++.+.
T Consensus 167 ----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~--------~L~~L~~~~~~~n~r~r~~a~~~~~~~ 232 (334)
T KOG2933|consen 167 ----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK--------LLRKLIPILQHSNPRVRAKAALCFSRC 232 (334)
T ss_pred ----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH--------HHHHHHHHHhhhchhhhhhhhcccccc
Confidence 22333333 33 2345689999999999988755543 567777788888888888776665544
No 287
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.17 E-value=19 Score=39.55 Aligned_cols=134 Identities=17% Similarity=0.162 Sum_probs=80.8
Q ss_pred hHHHHHHhccc---CChhHHHHHHHHHHhhhcCC----CCCChhhhhhhHHHHHHhhc----cCChhHHHHHHHHHHHhc
Q 037562 368 LIPLLAELNEN---ANLSMLRTATWTLFNFCRGK----PQPPFNQVRPALPVLAQLIR----SNDEEVLTDACWALSYLS 436 (670)
Q Consensus 368 i~~Ll~~l~~~---~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~i~~L~~lL~----~~~~~v~~~al~~L~~l~ 436 (670)
+..+..++... ..+.++..|..+++.+.... +..........++.+...+. ..+.+.+...+.+|+|+.
T Consensus 395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g 474 (574)
T smart00638 395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG 474 (574)
T ss_pred HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence 55566666322 24456666676666665422 21112233556666665554 456667788899999987
Q ss_pred cCChHHHHHHHHcCCHHHHHHhcC-C--CCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccC-CchhHHHH
Q 037562 437 DGTNDKVQAVIEAGVYPRLVELLG-H--SSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHN-HEESIKKE 512 (670)
Q Consensus 437 ~~~~~~~~~~~~~~~i~~L~~lL~-~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~-~~~~v~~~ 512 (670)
.. ..+..+..++. + .+..+|..|+++|..++...+... -+.++.++.+. .++++|..
T Consensus 475 ~~-----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v--------~~~l~~i~~n~~e~~EvRia 535 (574)
T smart00638 475 HP-----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKV--------QEVLLPIYLNRAEPPEVRMA 535 (574)
T ss_pred Ch-----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHH--------HHHHHHHHcCCCCChHHHHH
Confidence 43 22344555554 2 234589999999999886554432 34455666543 37889988
Q ss_pred HHHHHHHh
Q 037562 513 VSWIISNI 520 (670)
Q Consensus 513 a~~~L~~l 520 (670)
|+.++...
T Consensus 536 A~~~lm~t 543 (574)
T smart00638 536 AVLVLMET 543 (574)
T ss_pred HHHHHHhc
Confidence 88777655
No 288
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.15 E-value=0.011 Score=57.82 Aligned_cols=36 Identities=19% Similarity=0.148 Sum_probs=27.9
Q ss_pred CCCCccEEeEecCCCccccccCCcCCCCccceeeeec
Q 037562 153 TFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRW 189 (670)
Q Consensus 153 ~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~~ 189 (670)
.+++|..|++++ .+++.+|.+..-+.+|.+|+++..
T Consensus 250 ~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN 285 (565)
T KOG0472|consen 250 HLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNN 285 (565)
T ss_pred ccccceeeeccc-cccccCchHHHHhhhhhhhcccCC
Confidence 567888888886 578888888887888888877643
No 289
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=91.09 E-value=18 Score=44.61 Aligned_cols=269 Identities=6% Similarity=0.054 Sum_probs=146.1
Q ss_pred CCCHHHHHHHHHHHHHhhCCC---chhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHH
Q 037562 335 SPSVDVRKQTVWALGNVAGDS---PRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALP 411 (670)
Q Consensus 335 ~~~~~v~~~a~~~L~~l~~~~---~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~ 411 (670)
+++..++..|+..|..++..- ++....-.+...+.++...+.+..+.+++..++.++.++..........-...++.
T Consensus 1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~ 1227 (1780)
T PLN03076 1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFM 1227 (1780)
T ss_pred CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHH
Confidence 345677778888787777321 11111122334578888888778888999999999998876542221112233444
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHH--c----CCHHHHHHhcCCC-CccchhHHHHHHHHhhcCCc--
Q 037562 412 VLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIE--A----GVYPRLVELLGHS-SSSVLTPALRTIRNIVKGDD-- 482 (670)
Q Consensus 412 ~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~--~----~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~-- 482 (670)
.+.....+.++.+...+..++..+....- ..+.. . ..+..+..+.... +.++-..|+..|++++..-.
T Consensus 1228 VLs~aa~d~~e~iV~lAFetl~~I~~d~f---~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~ 1304 (1780)
T PLN03076 1228 VFTTAAYDDHKNIVLLAFEIIEKIIREYF---PYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEG 1304 (1780)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHHHHhhh---hhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhc
Confidence 44444556677888888888776653211 11110 1 2344444444333 45677777777776632100
Q ss_pred -------------------------hhhHHHH-----hCCChHHHHH---hhccCCchhHHHHHHHHHHHhhcC-----C
Q 037562 483 -------------------------FQTQCII-----NCGALPYFLD---MLVHNHEESIKKEVSWIISNITCG-----N 524 (670)
Q Consensus 483 -------------------------~~~~~l~-----~~~~~~~L~~---~l~~~~~~~v~~~a~~~L~~l~~~-----~ 524 (670)
.....+. ....++.|.. +..+. +.+||..|..+|-.+... +
T Consensus 1305 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~-RlEVR~~ALqtLF~iL~~yG~~Fs 1383 (1780)
T PLN03076 1305 DLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDP-RPEIRKSALQVLFDTLRNHGHLFS 1383 (1780)
T ss_pred cccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhhccCC
Confidence 0000000 0123333333 34555 999999999999887651 3
Q ss_pred HHHHHHHHhcCChHHHHHHhhcC----------------C-------hhHHHHHHHHHHHhcCCCCHHHHHHH--HHcCC
Q 037562 525 REQIQAVIDSGLIGPIVNLLQNT----------------E-------FDTKKEAAWAISNATKFGTHEQIKHL--VREGC 579 (670)
Q Consensus 525 ~~~~~~l~~~~~i~~L~~ll~~~----------------~-------~~v~~~a~~aL~~l~~~~~~~~~~~l--~~~~~ 579 (670)
++....+.. +++.++++.++.. + ..+...+..||..++..- ..+...+ +=.+.
T Consensus 1384 ~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLf-t~fFd~L~~~L~~~ 1461 (1780)
T PLN03076 1384 LPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLF-VKFYPTVNPLLKKV 1461 (1780)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 444444444 4555555554311 0 012333344444443320 1111111 11235
Q ss_pred cHHHHhhccCCChHHHHHHHHHHHHHHHhh
Q 037562 580 VKPLCDLLLCADPKIVTVCLEGLENILKVG 609 (670)
Q Consensus 580 i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~ 609 (670)
+..|..+...++..+...+..+|.+++...
T Consensus 1462 l~ll~~ci~q~n~~la~ig~~~l~~li~~n 1491 (1780)
T PLN03076 1462 LMLLVSFIKRPHQSLAGIGIAAFVRLMSNA 1491 (1780)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence 556666667788888888899998887643
No 290
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=91.02 E-value=20 Score=36.67 Aligned_cols=189 Identities=12% Similarity=0.067 Sum_probs=110.2
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHhcCCCC--CcHHHHHHcCCHHHHHHhhcCCC----CH--HHHHHHHHHHHHHcCCC
Q 037562 242 AMVDGVWSDDNSLQLEATTLFINLLSFDRS--PPIDEVIQSGVVPRFVEFLMRQD----YP--QLQFKAAWALTNIASGT 313 (670)
Q Consensus 242 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~g~l~~L~~ll~~~~----~~--~v~~~a~~~L~~l~~~~ 313 (670)
......+..+.+.++.|+....++..+.+- ...+.+.+.-+.+.+-+++.+.+ -+ -.+..++.+|+.++. .
T Consensus 15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~-~ 93 (698)
T KOG2611|consen 15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR-V 93 (698)
T ss_pred hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC-C
Confidence 455566667778899999999988776422 22445777777888888886532 12 244556677777776 4
Q ss_pred hhhH--HHHHhCCChHHHHHhhCC-CCH------HHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChh-H
Q 037562 314 SENT--KVVIDHGAVPIFVKLLAS-PSV------DVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLS-M 383 (670)
Q Consensus 314 ~~~~--~~i~~~~~i~~L~~lL~~-~~~------~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~-~ 383 (670)
++.. ..++ +.||.+...+.. .++ .+.+.+-.+|..++...+ ....++..|+++.+.+.- ...+-. -
T Consensus 94 pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~-G~~~Lia~G~~~~~~Q~y-~~~~~~~d 169 (698)
T KOG2611|consen 94 PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEA-GLMTLIASGGLRVIAQMY-ELPDGSHD 169 (698)
T ss_pred hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCc-hhHHHHhcCchHHHHHHH-hCCCCchh
Confidence 4432 2233 468889888864 232 377888999999998755 456677889999888654 222211 1
Q ss_pred HHHHHHHHHhhhcCC--CCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHh
Q 037562 384 LRTATWTLFNFCRGK--PQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYL 435 (670)
Q Consensus 384 ~~~a~~~L~~l~~~~--~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l 435 (670)
..-++.++.-....- -.......-..+..+..=+...+...+...+..|..+
T Consensus 170 ~alal~Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~v 223 (698)
T KOG2611|consen 170 MALALKVLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAV 223 (698)
T ss_pred HHHHHHHHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 222222222222111 1111111222344444444445566677777777643
No 291
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=91.00 E-value=8.1 Score=42.39 Aligned_cols=161 Identities=18% Similarity=0.182 Sum_probs=95.6
Q ss_pred ChHHHHHhhCC----CCHHHHHHHHHHHHHhhC----CCchhHHHHHhcCChHHHHHHhcc---cCChhHHHHHHHHHHh
Q 037562 325 AVPIFVKLLAS----PSVDVRKQTVWALGNVAG----DSPRCRDLVLSQGALIPLLAELNE---NANLSMLRTATWTLFN 393 (670)
Q Consensus 325 ~i~~L~~lL~~----~~~~v~~~a~~~L~~l~~----~~~~~~~~i~~~~~i~~Ll~~l~~---~~~~~~~~~a~~~L~~ 393 (670)
.+..+..++.+ +++.++..|+-+++++.. ..+.+...+ ....++.+...+.. ..+.+-+..++.+|+|
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFV-LEELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhh-HHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 45667777765 456788888888887762 222111111 11245555555532 3344555677888888
Q ss_pred hhcCCCCCChhhhhhhHHHHHHhhc-c--CChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC--CCccchh
Q 037562 394 FCRGKPQPPFNQVRPALPVLAQLIR-S--NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH--SSSSVLT 468 (670)
Q Consensus 394 l~~~~~~~~~~~~~~~i~~L~~lL~-~--~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~ 468 (670)
+... ..++.+...+. . .+..+|..|+++|..++...+...+ +.++++..+ .+.++|.
T Consensus 473 ~g~~----------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~--------~~l~~i~~n~~e~~EvRi 534 (574)
T smart00638 473 AGHP----------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ--------EVLLPIYLNRAEPPEVRM 534 (574)
T ss_pred cCCh----------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH--------HHHHHHHcCCCCChHHHH
Confidence 7764 34556666665 2 2467999999999998865554433 556666655 4556888
Q ss_pred HHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHH
Q 037562 469 PALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVS 514 (670)
Q Consensus 469 ~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~ 514 (670)
.|+.++... +|.. ..+..+...+..+++..|+....
T Consensus 535 aA~~~lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~ 570 (574)
T smart00638 535 AAVLVLMET---KPSV-------ALLQRIAELLNKEPNLQVASFVY 570 (574)
T ss_pred HHHHHHHhc---CCCH-------HHHHHHHHHHhhcCcHHHHHHhH
Confidence 887666433 2221 23556667777665666655443
No 292
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=91.00 E-value=0.029 Score=60.98 Aligned_cols=84 Identities=18% Similarity=0.267 Sum_probs=37.9
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM 102 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L 102 (670)
+||.|.+.+- .|..+|......++.|++|.++|- +|+.+|..+..++.|+.|...+- .+..+ |.+..+|.|+.+
T Consensus 384 hLKVLhLsyN-rL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahsN-~l~~f---Pe~~~l~qL~~l 457 (1081)
T KOG0618|consen 384 HLKVLHLSYN-RLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHSN-QLLSF---PELAQLPQLKVL 457 (1081)
T ss_pred ceeeeeeccc-ccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcCC-ceeec---hhhhhcCcceEE
Confidence 5555555432 344444333344455555555543 34455544444444444443211 12222 344455666666
Q ss_pred cccccccccee
Q 037562 103 EIESCDKITEI 113 (670)
Q Consensus 103 ~i~~c~~l~~~ 113 (670)
++ +|.++.++
T Consensus 458 Dl-S~N~L~~~ 467 (1081)
T KOG0618|consen 458 DL-SCNNLSEV 467 (1081)
T ss_pred ec-ccchhhhh
Confidence 65 44555443
No 293
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=90.89 E-value=21 Score=36.56 Aligned_cols=266 Identities=13% Similarity=0.051 Sum_probs=132.7
Q ss_pred CHHHHHHHHHHHHHhhCCCchhHHHHHhcC---ChHHHHHHhcc-cCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHH
Q 037562 337 SVDVRKQTVWALGNVAGDSPRCRDLVLSQG---ALIPLLAELNE-NANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPV 412 (670)
Q Consensus 337 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~---~i~~Ll~~l~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~ 412 (670)
+..+..+|+.+|+.+..+.. ....+-+.- .+...+..+.+ +.+..+...++|+|+.=.-............++..
T Consensus 59 ~~~L~~qALkll~~~l~~~~-i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~ 137 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPE-IVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA 137 (372)
T ss_pred chHHHHHHHHHHHHHHccHH-HHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence 67888899999999875432 222111111 24444555523 33445666677766642222111111122223333
Q ss_pred HHHhhc-cCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCc---hhh---
Q 037562 413 LAQLIR-SNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDD---FQT--- 485 (670)
Q Consensus 413 L~~lL~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~---~~~--- 485 (670)
+..+-+ -+...+....+.++.++....+.....-.+ ..++.++..+-+....++..|..+...+...-+ ...
T Consensus 138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~-~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~ 216 (372)
T PF12231_consen 138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHAD-IWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSV 216 (372)
T ss_pred HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHH
Confidence 333332 356778888999999998766554332222 467778877777777788877666555542111 111
Q ss_pred HHHHhC----C-----ChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHH--HHHHHHhcCChHHHHHHhhcCChhHHHH
Q 037562 486 QCIINC----G-----ALPYFLDMLVHNHEESIKKEVSWIISNITCGNRE--QIQAVIDSGLIGPIVNLLQNTEFDTKKE 554 (670)
Q Consensus 486 ~~l~~~----~-----~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~--~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 554 (670)
...++. + +.+.+..++.+. +....---.|...-...+.+. ....+ +..+...-..+.++|+.+|..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~L~~mi~~~-~~~~~a~~iW~~~i~LL~~~~~~~w~~~--n~wL~v~e~cFn~~d~~~k~~ 293 (372)
T PF12231_consen 217 LEDLQRSLENGKLIQLYCERLKEMIKSK-DEYKLAMQIWSVVILLLGSSRLDSWEHL--NEWLKVPEKCFNSSDPQVKIQ 293 (372)
T ss_pred HHHhccccccccHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHhCCchhhccHhH--hHHHHHHHHHhcCCCHHHHHH
Confidence 112222 2 233366666663 222222223333222222221 11111 123444445666889999999
Q ss_pred HHHHHHHhcCCC--CHHHHHHHHHcCCcHHHHhhcc-CCCh----HHHHHHHHHHHHHHHh
Q 037562 555 AAWAISNATKFG--THEQIKHLVREGCVKPLCDLLL-CADP----KIVTVCLEGLENILKV 608 (670)
Q Consensus 555 a~~aL~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~-~~~~----~v~~~a~~~l~~l~~~ 608 (670)
|..+-..+.... +.......+.. ...++..-++ .... +++..++..+.+++.+
T Consensus 294 A~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~ 353 (372)
T PF12231_consen 294 AFKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYY 353 (372)
T ss_pred HHHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHHH
Confidence 999988876521 11111121211 1222333332 2233 6677777777777644
No 294
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.83 E-value=19 Score=42.07 Aligned_cols=99 Identities=18% Similarity=0.142 Sum_probs=64.4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc---ccC---ChhHHHHHHHHHHhhhcCC-CCCChhhh
Q 037562 334 ASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELN---ENA---NLSMLRTATWTLFNFCRGK-PQPPFNQV 406 (670)
Q Consensus 334 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~---~~~---~~~~~~~a~~~L~~l~~~~-~~~~~~~~ 406 (670)
..+..+++...+.++.++.....+ .++. | -+.+++.+. +.. ...+.+.+..+|.-++.+. +.-....+
T Consensus 852 s~~~~evr~~sl~~l~silet~ge---~ll~-~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci 926 (1610)
T KOG1848|consen 852 SSRGVEVRISSLEALVSILETVGE---HLLH-G-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCI 926 (1610)
T ss_pred cCccceeeHHHHHHHHHHHhccch---hhcc-c-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHH
Confidence 346677788888888888744322 1211 2 344444442 222 3467778888888888776 55566667
Q ss_pred hhhHHHHHHhhcc-CChhHHHHHHHHHHHhcc
Q 037562 407 RPALPVLAQLIRS-NDEEVLTDACWALSYLSD 437 (670)
Q Consensus 407 ~~~i~~L~~lL~~-~~~~v~~~al~~L~~l~~ 437 (670)
.++++.+...-+. .|..+--.|+..++++++
T Consensus 927 ~~lidtl~~fs~QktdlNISltAi~lfWtvsD 958 (1610)
T KOG1848|consen 927 LDLIDTLLVFSRQKTDLNISLTAIGLFWTVSD 958 (1610)
T ss_pred HHHHHHHHHHHhhhccccccHHHHHHHHHHHH
Confidence 8888888777653 477888888888888764
No 295
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=90.77 E-value=8.6 Score=34.85 Aligned_cols=146 Identities=16% Similarity=0.157 Sum_probs=91.2
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 037562 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKV 319 (670)
Q Consensus 240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 319 (670)
++.+++...+++..++..|+..+..+...+=..+. ..+|.++.+..+++ +.++..|...+..+....+.....
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~------~cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~~ 82 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPK------QCVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVES 82 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH------HHHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHHH
Confidence 57788878899999999999999887665311222 15899999999988 899999999999998755444433
Q ss_pred HHhCCChHHHHHhh---CCC-CHHH---HHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccC-------ChhHHH
Q 037562 320 VIDHGAVPIFVKLL---ASP-SVDV---RKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENA-------NLSMLR 385 (670)
Q Consensus 320 i~~~~~i~~L~~lL---~~~-~~~v---~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~-------~~~~~~ 385 (670)
-...| +..-.++- ... .... .......+..+...+...|..+ +..+++.+..+. .+.-..
T Consensus 83 ~~~~g-i~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~ 156 (187)
T PF12830_consen 83 RYSEG-IRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLD 156 (187)
T ss_pred HHHHH-HHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHH
Confidence 33223 33222222 111 1111 4455666777776555555554 666777764332 233344
Q ss_pred HHHHHHHhhhcCC
Q 037562 386 TATWTLFNFCRGK 398 (670)
Q Consensus 386 ~a~~~L~~l~~~~ 398 (670)
...++..|++.-+
T Consensus 157 ~~~Fla~nLA~l~ 169 (187)
T PF12830_consen 157 FLLFLAENLATLP 169 (187)
T ss_pred HHHHHHHHHhcCC
Confidence 5566666666543
No 296
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=90.75 E-value=7.5 Score=40.26 Aligned_cols=232 Identities=15% Similarity=0.100 Sum_probs=133.9
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562 239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK 318 (670)
Q Consensus 239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 318 (670)
-+..|+..+.++|+..|......+.++-.. ....+..+...+-..+.+++............+.+++.+..+....-+
T Consensus 134 fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k--~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk 211 (409)
T PF01603_consen 134 FIKKLLELFDSPDPRERDYLKTILHRIYGK--FPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLK 211 (409)
T ss_dssp HHHHHHHTTTSSTHHHHHHHHHHHHHHHHH---TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCc
Confidence 378899999999999999999999988665 334455555557778888887655466777888899988875321111
Q ss_pred HHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562 319 VVIDHGAVPIFVKLLASPS-VDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG 397 (670)
Q Consensus 319 ~i~~~~~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 397 (670)
.-...-....++.+.+.+. ......-..++..+...++.....+ +..+++.- ..++..-...-+.-+..+...
T Consensus 212 ~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk~W-P~t~s~Kev~FL~el~~il~~ 285 (409)
T PF01603_consen 212 EEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLKHW-PKTNSQKEVLFLNELEEILEV 285 (409)
T ss_dssp HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHHS--SS-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhC-CCCCchhHHHHHHHHHHHHHh
Confidence 1111111244555555543 2334455566666665555543332 34444444 333333333344445555544
Q ss_pred CCCCC-hhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHc---CCHHHHHHhcCC-----CCccchh
Q 037562 398 KPQPP-FNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEA---GVYPRLVELLGH-----SSSSVLT 468 (670)
Q Consensus 398 ~~~~~-~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~i~~L~~lL~~-----~~~~v~~ 468 (670)
-+... ......+...+...+.+.+..|.+.|+..+.| +.... ++.. .+++.+..-+.. -+..++.
T Consensus 286 ~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~~-li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~ 359 (409)
T PF01603_consen 286 LPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNN-----EYFLS-LISQNSRVILPIIFPALYRNSKNHWNQTVRN 359 (409)
T ss_dssp --HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHHH-HHHCTHHHHHHHHHHHHSSTTSS-SSTTHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHHH-HHHhChHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 32222 22335677778888889999999888866533 21122 2221 255666666543 3567999
Q ss_pred HHHHHHHHhhcCCchh
Q 037562 469 PALRTIRNIVKGDDFQ 484 (670)
Q Consensus 469 ~a~~~L~~l~~~~~~~ 484 (670)
.|..++..+...++..
T Consensus 360 ~a~~vl~~l~~~d~~l 375 (409)
T PF01603_consen 360 LAQNVLKILMEMDPKL 375 (409)
T ss_dssp HHHHHHHHHHTTSHHH
T ss_pred HHHHHHHHHHHhCHHH
Confidence 9999998888766543
No 297
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.74 E-value=0.024 Score=52.65 Aligned_cols=77 Identities=25% Similarity=0.412 Sum_probs=42.4
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeec-cc-ccccccccchhhhcccccc
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVS-HC-KRLKIVLTSSIAKTLVRLR 100 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~-~c-~~l~~l~~~~~~~~l~~L~ 100 (670)
+.+.|+.++|. |.++.. ...++.|+.|.++= .++.++.+ +..+.+|+.|++. +| +.+..+ ..+.++|+|+
T Consensus 20 ~vkKLNcwg~~-L~DIsi--c~kMp~lEVLsLSv-NkIssL~p-l~rCtrLkElYLRkN~I~sldEL---~YLknlpsLr 91 (388)
T KOG2123|consen 20 NVKKLNCWGCG-LDDISI--CEKMPLLEVLSLSV-NKISSLAP-LQRCTRLKELYLRKNCIESLDEL---EYLKNLPSLR 91 (388)
T ss_pred HhhhhcccCCC-ccHHHH--HHhcccceeEEeec-cccccchh-HHHHHHHHHHHHHhcccccHHHH---HHHhcCchhh
Confidence 56777888873 555443 24678888877743 22333322 2234566666553 22 222222 3456777777
Q ss_pred eeccccc
Q 037562 101 YMEIESC 107 (670)
Q Consensus 101 ~L~i~~c 107 (670)
.|+|..-
T Consensus 92 ~LWL~EN 98 (388)
T KOG2123|consen 92 TLWLDEN 98 (388)
T ss_pred hHhhccC
Confidence 7777653
No 298
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=90.70 E-value=4.8 Score=43.25 Aligned_cols=113 Identities=14% Similarity=0.151 Sum_probs=83.2
Q ss_pred HhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh-cCChhHHHHHHHHHHHhcCCCC
Q 037562 489 INCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ-NTEFDTKKEAAWAISNATKFGT 567 (670)
Q Consensus 489 ~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~ 567 (670)
+...+++.|..-+++. +..+++.+...+..++..-+ ...++.-++|.+..+.. ..+..++.+++.+++.++...+
T Consensus 386 ~~~~IlplL~~S~~~~-~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD 461 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDS-DVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD 461 (700)
T ss_pred HHHHHHHHHHHHhcCc-chhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH
Confidence 3456888899999998 99999999999999865322 23456668888887744 6778999999999999985322
Q ss_pred HHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhh
Q 037562 568 HEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGV 610 (670)
Q Consensus 568 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~ 610 (670)
.. .++ +.+.++.+..+..++.+....+.+..+++-...
T Consensus 462 ~~---~v~--d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~ 499 (700)
T KOG2137|consen 462 KA---AVL--DELLPILKCIKTRDPAIVMGFLRIYEALALIIY 499 (700)
T ss_pred HH---HhH--HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcc
Confidence 11 111 246667777788999999998888888765433
No 299
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=90.68 E-value=2.2 Score=36.22 Aligned_cols=74 Identities=12% Similarity=-0.008 Sum_probs=62.5
Q ss_pred ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccC------CChHHHHHHHHHHHHHHHhh
Q 037562 536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLC------ADPKIVTVCLEGLENILKVG 609 (670)
Q Consensus 536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~a~~~l~~l~~~~ 609 (670)
++..+..-+.++++.++..|+..|-.+..++.+.+...+...+.+..|++++.. .++.|+..++..+...-...
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 455667778899999999999999999999888888888888899999999953 56789999999998876543
No 300
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.61 E-value=1.7 Score=41.50 Aligned_cols=146 Identities=16% Similarity=0.161 Sum_probs=101.5
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhH
Q 037562 407 RPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQ 486 (670)
Q Consensus 407 ~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 486 (670)
...+...+..|.+.|......++..+..++....+.....+. .++-.+++-+++....|-..|+.+++.+.......+.
T Consensus 87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677788889999999999999998776655554444 4666777778888888999999999999765444333
Q ss_pred HHHhCCChHHHHHhh-ccC--CchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhc
Q 037562 487 CIINCGALPYFLDML-VHN--HEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNAT 563 (670)
Q Consensus 487 ~l~~~~~~~~L~~~l-~~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 563 (670)
. -++.++..| ... ++.-+++.|-.+|..+..+-.. ..+++.|+..+++.++.++..++.++.+..
T Consensus 166 ~-----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp-------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v 233 (334)
T KOG2933|consen 166 Q-----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP-------QKLLRKLIPILQHSNPRVRAKAALCFSRCV 233 (334)
T ss_pred H-----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh-------HHHHHHHHHHHhhhchhhhhhhhccccccc
Confidence 2 222333332 221 1556888899999888664222 135677888888889999998888777765
Q ss_pred CC
Q 037562 564 KF 565 (670)
Q Consensus 564 ~~ 565 (670)
..
T Consensus 234 ~r 235 (334)
T KOG2933|consen 234 IR 235 (334)
T ss_pred ee
Confidence 53
No 301
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=90.56 E-value=2.3 Score=38.42 Aligned_cols=115 Identities=14% Similarity=0.041 Sum_probs=84.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhc-----CChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhh
Q 037562 512 EVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQN-----TEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDL 586 (670)
Q Consensus 512 ~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~-----~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~l 586 (670)
.|...+.-++ ..|+....++++.+--.+...+.. .-+.+|..+.++++.+..++++...+.+....++|...++
T Consensus 119 naL~lLQcla-ShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI 197 (315)
T COG5209 119 NALNLLQCLA-SHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI 197 (315)
T ss_pred HHHHHHHHHh-cCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence 3444444444 447777777887764455555542 2357899999999999999999999999999999999999
Q ss_pred ccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHH
Q 037562 587 LLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEK 637 (670)
Q Consensus 587 l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 637 (670)
++..+.--+..++.++..++-++.-.. -.++.+++.-++..
T Consensus 198 me~gSElSktvaifI~qkil~dDvGLq----------YiCqT~eRFyAv~~ 238 (315)
T COG5209 198 MELGSELSKTVAIFIFQKILGDDVGLQ----------YICQTFERFYAVNL 238 (315)
T ss_pred HHhhhHHHHHHHHHHHHHHhccchhHH----------HHHHHHHHHHHHHH
Confidence 999988888888888888876554333 35666666666554
No 302
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=90.27 E-value=19 Score=36.62 Aligned_cols=148 Identities=14% Similarity=0.097 Sum_probs=90.5
Q ss_pred HHHHcCCHHHHHHhcCCCC-ccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhc----cC-CchhHHHHHHHHHH
Q 037562 445 AVIEAGVYPRLVELLGHSS-SSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLV----HN-HEESIKKEVSWIIS 518 (670)
Q Consensus 445 ~~~~~~~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~----~~-~~~~v~~~a~~~L~ 518 (670)
.+.+.+-.+.+-+-+...+ .+-|..|+..+..++.........++ ...+..+++ ++ .+..-+..|...++
T Consensus 205 ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~----~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ 280 (370)
T PF08506_consen 205 ELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL----MQYIQQLLQQYASNPSNNWRSKDGALYLIG 280 (370)
T ss_dssp HHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH-TTT-HHHHHHHHHHHH
T ss_pred HHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHhhCCcccHHHHHHHHHHHH
Confidence 3555566666666665433 45678888999999864433322222 123333333 22 26678888999999
Q ss_pred HhhcCCHH------------HHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhh
Q 037562 519 NITCGNRE------------QIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDL 586 (670)
Q Consensus 519 ~l~~~~~~------------~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~l 586 (670)
.++..... ....+....++|.|. --.+..+-++..|+..+..+-..-+++.... +++.++..
T Consensus 281 ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~~l~~-----~~~~l~~~ 354 (370)
T PF08506_consen 281 ALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKEQLLQ-----IFPLLVNH 354 (370)
T ss_dssp HHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HHHHHH-----HHHHHHHH
T ss_pred HHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHH
Confidence 99873211 345556666777776 2224567789999999999887655544333 78999999
Q ss_pred ccCCChHHHHHHHHHH
Q 037562 587 LLCADPKIVTVCLEGL 602 (670)
Q Consensus 587 l~~~~~~v~~~a~~~l 602 (670)
+.+++.-|..-|..++
T Consensus 355 L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 355 LQSSSYVVHTYAAIAI 370 (370)
T ss_dssp TTSS-HHHHHHHHHHH
T ss_pred hCCCCcchhhhhhhhC
Confidence 9999888877766553
No 303
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=90.18 E-value=1.4 Score=37.84 Aligned_cols=74 Identities=9% Similarity=0.041 Sum_probs=64.4
Q ss_pred ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccC-CChHHHHHHHHHHHHHHHhh
Q 037562 536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLC-ADPKIVTVCLEGLENILKVG 609 (670)
Q Consensus 536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~ 609 (670)
++..+..-+.++++.++..|+..|..++.++.......+...+.+..|..++.. .++.|+..++..+..+....
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f 112 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF 112 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence 455667777889999999999999999999998888899999999999999977 78899999999998876543
No 304
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.89 E-value=39 Score=41.08 Aligned_cols=232 Identities=15% Similarity=0.068 Sum_probs=120.5
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHH
Q 037562 282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSVDVRKQTVWALGNVAGDSPRCRD 360 (670)
Q Consensus 282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~ 360 (670)
.+..++..+...+ +..+-.+..+++.++..-++ ..++ ++..+.+++-+.+ .++..|..-.-+++.+-.+....-.
T Consensus 877 ~~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~--~~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s 952 (2067)
T KOG1822|consen 877 ALTLIVNSLINPN-PKLRCAAAEALARLAQVVGS--APFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGS 952 (2067)
T ss_pred HHHHHhhhhccCC-hHHHHHHHHHHHHHHHhccc--cchH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCC
Confidence 3444556666677 78888899999988872111 1111 2334556665655 4555555444455544322111100
Q ss_pred HHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCC---hhHHH-----------
Q 037562 361 LVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSND---EEVLT----------- 426 (670)
Q Consensus 361 ~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~---~~v~~----------- 426 (670)
.-.....+..++.+..++.++.|++.++.++..+...............+..+..++-+.. .++..
T Consensus 953 ~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~ 1032 (2067)
T KOG1822|consen 953 GQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDD 1032 (2067)
T ss_pred chhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchh
Confidence 0001123666777777777889999999999998877643334444555555555554321 12221
Q ss_pred --HHHHHHHHhccCChH-HHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhcc
Q 037562 427 --DACWALSYLSDGTND-KVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVH 503 (670)
Q Consensus 427 --~al~~L~~l~~~~~~-~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~ 503 (670)
..+.+++.=...+.. ..-..+....+....-++.++++-++..|+.++-++.-..+..... .-++..+..++.+
T Consensus 1033 ~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~---~~lV~~L~~~l~s 1109 (2067)
T KOG1822|consen 1033 EDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNL---DSLVLQLCSLLSS 1109 (2067)
T ss_pred HHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccH---HHHHHHHHHHhcc
Confidence 122222222211111 0111222233344444566678889999999998887544432221 1245556666655
Q ss_pred CCchhHHHHHHHHHHHhh
Q 037562 504 NHEESIKKEVSWIISNIT 521 (670)
Q Consensus 504 ~~~~~v~~~a~~~L~~l~ 521 (670)
. ..-.|..+..++..+.
T Consensus 1110 ~-~~i~r~~~~~clrql~ 1126 (2067)
T KOG1822|consen 1110 S-YLILRRASFSCLRQLV 1126 (2067)
T ss_pred h-hhhhhhhHHhhhhHHh
Confidence 5 3334444444444443
No 305
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=89.54 E-value=3.2 Score=35.56 Aligned_cols=74 Identities=11% Similarity=0.033 Sum_probs=63.2
Q ss_pred ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhcc-CCChHHHHHHHHHHHHHHHhh
Q 037562 536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLL-CADPKIVTVCLEGLENILKVG 609 (670)
Q Consensus 536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~ 609 (670)
++..+..-+.++++.++..|+..|..+..++.......+...+.++.|..++. ..++.|+..++..+.......
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 45667777888999999999999999999988888888888999999999986 567789999999998887543
No 306
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=89.52 E-value=1.6 Score=33.96 Aligned_cols=84 Identities=11% Similarity=0.128 Sum_probs=62.8
Q ss_pred HHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHH
Q 037562 452 YPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAV 531 (670)
Q Consensus 452 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l 531 (670)
+...+..+.++.+.+|..++..|..+..... ....-..+++..+...++++ ++-|--.|..++..++...++
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~----- 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPD----- 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChH-----
Confidence 3556677888899999999999999998665 12122346788888999999 999999999999999875554
Q ss_pred HhcCChHHHHHHhhc
Q 037562 532 IDSGLIGPIVNLLQN 546 (670)
Q Consensus 532 ~~~~~i~~L~~ll~~ 546 (670)
.+++.|++...+
T Consensus 77 ---~vl~~L~~~y~~ 88 (92)
T PF10363_consen 77 ---EVLPILLDEYAD 88 (92)
T ss_pred ---HHHHHHHHHHhC
Confidence 245555555443
No 307
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.19 E-value=39 Score=37.15 Aligned_cols=317 Identities=15% Similarity=0.108 Sum_probs=166.3
Q ss_pred HHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC--ChhhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhh
Q 037562 276 EVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASG--TSENTKVVIDHGAVPIFVKLLASP-SVDVRKQTVWALGNVA 352 (670)
Q Consensus 276 ~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~--~~~~~~~i~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~ 352 (670)
.-.....+|.+- ...++..-+|...++.++.-... ..+.+.. +-..+++++++. |..++-.++.++.-..
T Consensus 483 ~Wl~~~llpEl~--~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l-----~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~v 555 (978)
T KOG1993|consen 483 KWLQEALLPELA--NDHGNSRIIRRRVAWILGQWVSVQQKLELKPL-----LYCAFLNLLQDQNDLVVRLTTARTLKLVV 555 (978)
T ss_pred HHHHHhhCHHhh--hcccchhHHHHHHHHHHhhhhheechHhHHHH-----HHHHHHHhcCccccceeehHHHHHHHHhh
Confidence 333444555554 23334356889999999997761 1222222 245788899886 7778888889988877
Q ss_pred CCCchhHHHHHh--cCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhc--cCChhHHHHH
Q 037562 353 GDSPRCRDLVLS--QGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIR--SNDEEVLTDA 428 (670)
Q Consensus 353 ~~~~~~~~~i~~--~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~v~~~a 428 (670)
.+-.-..+.+.. .+....+.+++..-...+.+...+..++.+...-..........+++.+-.+=+ .+.+-++.+.
T Consensus 556 DD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~al 635 (978)
T KOG1993|consen 556 DDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCAL 635 (978)
T ss_pred hhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHH
Confidence 443222222221 223445566665555667777888888877755321111111222222222222 2345677778
Q ss_pred HHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC-CCcc---chhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccC
Q 037562 429 CWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH-SSSS---VLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHN 504 (670)
Q Consensus 429 l~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~---v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~ 504 (670)
+.++.++...-......+. .++-.++.+-.+ .+++ ..+.+...-.....+.+.....+. +.+|.+...+...
T Consensus 636 L~~L~~lV~alg~qS~~~~--~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~l~~~iE~s 711 (978)
T KOG1993|consen 636 LATLRNLVNALGAQSFEFY--PFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLFPHLLYIIEQS 711 (978)
T ss_pred HHHHHHHHHHhccCCccch--HHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHHHHHHHHHHhh
Confidence 8888888743221111111 111222222222 2332 233333333333333333333333 3677777777655
Q ss_pred CchhHHHHHHHHHHHhhc-CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHH
Q 037562 505 HEESIKKEVSWIISNITC-GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPL 583 (670)
Q Consensus 505 ~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L 583 (670)
....+ .+..++..-.. .+.. .-.-...|+...+.+++.+-..+-....+..+..+... .+....+...++++.+
T Consensus 712 -te~L~-t~l~Ii~sYilLd~~~-fl~~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t--~~il~~~~~~~~L~~l 786 (978)
T KOG1993|consen 712 -TENLP-TVLMIISSYILLDNTV-FLNDYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKT--NPILGSLLFSPLLSRL 786 (978)
T ss_pred -hhhHH-HHHHHHHHHHhhccHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh--hHHHHhhhcchhhHHH
Confidence 33333 33334333222 2222 11222346788888888766666667777777777763 3455555667777777
Q ss_pred Hhhc--cCCChHHHHHHHHHHHHHHHh
Q 037562 584 CDLL--LCADPKIVTVCLEGLENILKV 608 (670)
Q Consensus 584 ~~ll--~~~~~~v~~~a~~~l~~l~~~ 608 (670)
..-. +.+.|.+...-+..+.++.-.
T Consensus 787 f~~I~~~~~yP~~~~~yl~vvaRi~l~ 813 (978)
T KOG1993|consen 787 FLSIAENDKYPYVMGEYLLVVARISLR 813 (978)
T ss_pred HHHHHhCCCCchhHHHHHHHHHHHHhc
Confidence 6644 556676766666666665443
No 308
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=88.69 E-value=2 Score=33.43 Aligned_cols=84 Identities=15% Similarity=0.194 Sum_probs=63.0
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562 239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK 318 (670)
Q Consensus 239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 318 (670)
.+...++.+.++.+-+|..|+..|+++.... + ....-..+++..+...+++++ +-|-..|+.+|..++...++
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~-~--~~~~~~~~il~l~l~~L~d~D-syVYL~aI~~L~~La~~~p~--- 76 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESK-S--EPVIDIPKILDLFLSQLKDED-SYVYLNAIKGLAALADRHPD--- 76 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcC-C--cchhhHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHHHHChH---
Confidence 3567778888888999999999999998874 2 122223457788889999999 89999999999999985443
Q ss_pred HHHhCCChHHHHHhhC
Q 037562 319 VVIDHGAVPIFVKLLA 334 (670)
Q Consensus 319 ~i~~~~~i~~L~~lL~ 334 (670)
.+++.|++...
T Consensus 77 -----~vl~~L~~~y~ 87 (92)
T PF10363_consen 77 -----EVLPILLDEYA 87 (92)
T ss_pred -----HHHHHHHHHHh
Confidence 24556665443
No 309
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.61 E-value=14 Score=42.98 Aligned_cols=253 Identities=11% Similarity=0.103 Sum_probs=109.7
Q ss_pred ChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccC---ChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHH
Q 037562 380 NLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSN---DEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLV 456 (670)
Q Consensus 380 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~---~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~ 456 (670)
..+++.....++.++..............+++.+-.+...+ ...+...+..++.-++...-.....-.=.++++.+.
T Consensus 855 ~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~lidtl~ 934 (1610)
T KOG1848|consen 855 GVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILDLIDTLL 934 (1610)
T ss_pred cceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHHHHHHHH
Confidence 34566666666666665532211111122333333333222 344555555555555432110000000113445555
Q ss_pred HhcC-CCCccchhHHHHHHHHhhcCCchhh----HHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHH
Q 037562 457 ELLG-HSSSSVLTPALRTIRNIVKGDDFQT----QCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAV 531 (670)
Q Consensus 457 ~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~----~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l 531 (670)
.+-+ ..|..+--.|+..++.++..-.... +..-..+.++.+.. ... ...+..++.|.+-
T Consensus 935 ~fs~QktdlNISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~s--s~~-~~~~l~e~lwi~l------------- 998 (1610)
T KOG1848|consen 935 VFSRQKTDLNISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYS--SMK-SKEILPEVLWIML------------- 998 (1610)
T ss_pred HHHhhhccccccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcc--ccc-chhhhhhHHHHHH-------------
Confidence 4443 3556677777777776653111100 00111223333333 112 3344455555432
Q ss_pred HhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhcc----------------CCChHHH
Q 037562 532 IDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLL----------------CADPKIV 595 (670)
Q Consensus 532 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~----------------~~~~~v~ 595 (670)
+..|.++..++.++||..|+.++..+............++.-....++.+|+ ....+..
T Consensus 999 -----l~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~ 1073 (1610)
T KOG1848|consen 999 -----LVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETS 1073 (1610)
T ss_pred -----HHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhh
Confidence 2223333344445566666666555543211111111111112222333332 2223444
Q ss_pred HHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562 596 TVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYW 661 (670)
Q Consensus 596 ~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~ 661 (670)
...+.++..+|...-+.-. ..+.+.+..++ .++-+..+..+.++++.-.|++.+++..
T Consensus 1074 ~ltisgIaklf~e~fk~ll------nln~f~~vwe~--ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1074 CLTISGIAKLFSENFKLLL------NLNGFLDVWEE--LLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred hhhHHHHHHHHHHHHHHHH------hcccHHHHHHH--HHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence 5667777777654322211 12222222211 1445566678889999988888887763
No 310
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.61 E-value=0.026 Score=55.31 Aligned_cols=136 Identities=15% Similarity=0.164 Sum_probs=77.2
Q ss_pred cCCCCcEEEEecCCCCccccCCCccccccceeeeccccc-ccccccchhhhcccccceecc-----------ccccccce
Q 037562 45 VMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKR-LKIVLTSSIAKTLVRLRYMEI-----------ESCDKITE 112 (670)
Q Consensus 45 ~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~-l~~l~~~~~~~~l~~L~~L~i-----------~~c~~l~~ 112 (670)
.+.+|..|.+.+- +++.+++....+..|++|+. |++ |+.+ |+.++.+.+|+-|++ .+|..+++
T Consensus 158 ~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~--~~N~L~tl--P~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~E 232 (565)
T KOG0472|consen 158 NLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDC--NSNLLETL--PPELGGLESLELLYLRRNKIRFLPEFPGCSLLKE 232 (565)
T ss_pred HHHHHHHhhcccc-chhhCCHHHHHHHHHHhccc--chhhhhcC--ChhhcchhhhHHHHhhhcccccCCCCCccHHHHH
Confidence 3444555555443 35555555555666666553 233 3333 244455555555544 34444444
Q ss_pred eccccccc---cccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCccceeeeec
Q 037562 113 IVLVDDVV---AQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRW 189 (670)
Q Consensus 113 ~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~~ 189 (670)
+...+... .......+++|..|++.+ .+|++.+.+ ..-+.+|++|++++- .+.++|....++ .|+.|-+.+.
T Consensus 233 lh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde--~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 233 LHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDE--ICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred HHhcccHHHhhHHHHhcccccceeeeccc-cccccCchH--HHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCC
Confidence 43211110 112233678888888876 578888774 445678999999874 577888877766 7777766544
Q ss_pred c
Q 037562 190 D 190 (670)
Q Consensus 190 ~ 190 (670)
+
T Consensus 308 P 308 (565)
T KOG0472|consen 308 P 308 (565)
T ss_pred c
Confidence 3
No 311
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=88.21 E-value=38 Score=35.87 Aligned_cols=252 Identities=14% Similarity=0.107 Sum_probs=128.0
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHH
Q 037562 251 DNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFV 330 (670)
Q Consensus 251 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~ 330 (670)
..+.+..+...+..+...... ... ... ..+...+.....++.-..-+.+|..++.+..+. . ..+.++.+.+.
T Consensus 42 p~e~R~~~~~ll~~~i~~~~~-~~~-~~R----~~fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi-~-~~~~~i~~~L~ 113 (464)
T PF11864_consen 42 PSEARRAALELLIACIKRQDS-SSG-LMR----AEFFRDISDPSNDDDFDLRLEALIALTDNGRDI-D-FFEYEIGPFLL 113 (464)
T ss_pred CHHHHHHHHHHHHHHHHcccc-ccH-HHH----HHHHHHHhcCCCchhHHHHHHHHHHHHcCCcCc-h-hcccchHHHHH
Confidence 356888888888888776421 111 111 122333333322333334445555555533333 2 24566777777
Q ss_pred HhhCCC---------------------------CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhH
Q 037562 331 KLLASP---------------------------SVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSM 383 (670)
Q Consensus 331 ~lL~~~---------------------------~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~ 383 (670)
..+..- +.......+..+.|+...+...-+.-.-.+.+..++.+.....+++.
T Consensus 114 ~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~d 193 (464)
T PF11864_consen 114 SWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDD 193 (464)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHH
Confidence 655310 12223344455555554332211111111234444445444444444
Q ss_pred HHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCC-
Q 037562 384 LRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHS- 462 (670)
Q Consensus 384 ~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~- 462 (670)
.+.+..++-.+..... ........++..|-..... .+....+-.++.||+...-.. ..+..|..+|.++
T Consensus 194 i~~~L~vldaii~y~~-iP~~sl~~~i~vLCsi~~~--~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~ 263 (464)
T PF11864_consen 194 IEACLSVLDAIITYGD-IPSESLSPCIEVLCSIVNS--VSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPD 263 (464)
T ss_pred HHHHHHHHHHHHHcCc-CChHHHHHHHHHHhhHhcc--cccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccC
Confidence 5555555555554431 1122223334444433222 256666777888887543321 3456677777332
Q ss_pred -----CccchhHHHHHHHHhhcCCchhhH-HHHhC--CChHHHHHhhccCCchhHHHHHHHHHHHhh
Q 037562 463 -----SSSVLTPALRTIRNIVKGDDFQTQ-CIINC--GALPYFLDMLVHNHEESIKKEVSWIISNIT 521 (670)
Q Consensus 463 -----~~~v~~~a~~~L~~l~~~~~~~~~-~l~~~--~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~ 521 (670)
+..+...|+..+..+..+...... .+--. -+++.+...++.. ++.+-.+....+.++.
T Consensus 264 ~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 264 PQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLL 329 (464)
T ss_pred ccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHH
Confidence 334567899999988876632211 11112 2678888888877 7777777777777776
No 312
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=88.08 E-value=41 Score=36.05 Aligned_cols=149 Identities=13% Similarity=-0.013 Sum_probs=90.0
Q ss_pred chhHHHHHHHHH---HHhhcC-CHHHH---HHHHhcCChHHHHH----HhhcCChhHHHHHHHHHHHhcCCCCHHHHHHH
Q 037562 506 EESIKKEVSWII---SNITCG-NREQI---QAVIDSGLIGPIVN----LLQNTEFDTKKEAAWAISNATKFGTHEQIKHL 574 (670)
Q Consensus 506 ~~~v~~~a~~~L---~~l~~~-~~~~~---~~l~~~~~i~~L~~----ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l 574 (670)
+..++..+...+ .....+ .+... ...+..++.+.+-. -....+...|..+..+|+.++... +... .
T Consensus 334 ~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~-p~l~--~ 410 (501)
T PF13001_consen 334 NSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRA-PSLF--S 410 (501)
T ss_pred ccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccC-cccc--c
Confidence 445666665555 444332 23222 23334555555510 112346789999999999999973 3221 1
Q ss_pred HHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHH
Q 037562 575 VREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAV 654 (670)
Q Consensus 575 ~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~ 654 (670)
-+.+.+..|.+-++++.++++..+-+||..+.......... ....... .....+.....+....++..|.
T Consensus 411 ~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~------~~~~~~~----~~~~l~~~~~~~~~~~~R~~av 480 (501)
T PF13001_consen 411 KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDD------EDEQKRL----LLELLLLSYIQSEVRSCRYAAV 480 (501)
T ss_pred ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccc------hhHHHHH----HHHHHHHhhccchhHHHHHHHH
Confidence 23456888888889999999999999999987654432210 0000000 0111223334566677899999
Q ss_pred HHHHHhcCCcccc
Q 037562 655 EILETYWSSRVIG 667 (670)
Q Consensus 655 ~~l~~~~~~~~~~ 667 (670)
+-.+..|+.++++
T Consensus 481 k~an~~fpf~d~~ 493 (501)
T PF13001_consen 481 KYANACFPFSDVP 493 (501)
T ss_pred HHHHHhCCccchH
Confidence 9999999998864
No 313
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=88.06 E-value=43 Score=36.22 Aligned_cols=112 Identities=13% Similarity=0.096 Sum_probs=78.6
Q ss_pred hHHHHHhhccCCchhHHHHHHHHHHHhhcC---CHHHHHHHHh--cCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCH
Q 037562 494 LPYFLDMLVHNHEESIKKEVSWIISNITCG---NREQIQAVID--SGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTH 568 (670)
Q Consensus 494 ~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~---~~~~~~~l~~--~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~ 568 (670)
...+..+|++. +...|-....+.+|+..+ +++.....-+ +..+..+.+-+.+..+.+|..|...+..+....+.
T Consensus 301 ~~~~~~LLdse-s~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk 379 (1128)
T COG5098 301 YEHFDELLDSE-SFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSK 379 (1128)
T ss_pred HHHHHHHhccc-chhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccc
Confidence 56788899998 888998888899998762 2322211111 23456666667788899999999999998875321
Q ss_pred HHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhh
Q 037562 569 EQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVG 609 (670)
Q Consensus 569 ~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~ 609 (670)
... ..+.++....+.+.+...-||++|++.+..++...
T Consensus 380 ~~~---~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~~H 417 (1128)
T COG5098 380 TVG---RRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRH 417 (1128)
T ss_pred ccc---hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Confidence 111 11235667778888889999999999999887543
No 314
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=87.97 E-value=0.38 Score=49.94 Aligned_cols=153 Identities=18% Similarity=0.159 Sum_probs=74.2
Q ss_pred cccEEEeccCcCcccccccccccCC-CCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhh-cccccc
Q 037562 23 EVKISEAYNCYRLENILIEESSVMN-NLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAK-TLVRLR 100 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~-~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~-~l~~L~ 100 (670)
.+..|.+.+- .+.+++.. ...+. +|+.|++++- ++..++.....+++|+.|.+++++ +..+ +... .+++|+
T Consensus 117 ~l~~L~l~~n-~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~-l~~l---~~~~~~~~~L~ 189 (394)
T COG4886 117 NLTSLDLDNN-NITDIPPL-IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND-LSDL---PKLLSNLSNLN 189 (394)
T ss_pred ceeEEecCCc-ccccCccc-cccchhhccccccccc-chhhhhhhhhccccccccccCCch-hhhh---hhhhhhhhhhh
Confidence 3555554322 34444432 13342 7777777654 355554455677788888888774 2333 2322 667777
Q ss_pred eeccccccccceeccc-------------cc--cccccccccccccccccccccccccccccCCcccCCCCccEEeEecC
Q 037562 101 YMEIESCDKITEIVLV-------------DD--VVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYC 165 (670)
Q Consensus 101 ~L~i~~c~~l~~~~~~-------------~~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C 165 (670)
.|++++.. +..++.. .. .........++++..|. +.+.+..........+++|+.|++.++
T Consensus 190 ~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~---l~~n~~~~~~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 190 NLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLE---LSNNKLEDLPESIGNLSNLETLDLSNN 265 (394)
T ss_pred heeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccc---cCCceeeeccchhccccccceeccccc
Confidence 77776543 2222210 00 00000111223333333 222222110112345667888887765
Q ss_pred CCccccccCCcCCCCccceeeee
Q 037562 166 PNMKIFSGGELSTPNLHKVQLSR 188 (670)
Q Consensus 166 ~~l~~~p~~~~~~~~L~~l~i~~ 188 (670)
.+..++. .....+|+.|++++
T Consensus 266 -~i~~i~~-~~~~~~l~~L~~s~ 286 (394)
T COG4886 266 -QISSISS-LGSLTNLRELDLSG 286 (394)
T ss_pred -ccccccc-ccccCccCEEeccC
Confidence 3455554 55567777776644
No 315
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=87.81 E-value=31 Score=37.04 Aligned_cols=288 Identities=13% Similarity=0.138 Sum_probs=145.0
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562 239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK 318 (670)
Q Consensus 239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 318 (670)
++..+=+.+.++++.++.-|+-.+.-..++..++. .-++..|...+++++ ..++..|+.-|+-.-.++ .++
T Consensus 416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne~------dpalALLsdyv~~~~-s~~ri~aIlGLglayaGs--q~e 486 (878)
T KOG2005|consen 416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFNEC------DPALALLSDYLQSSS-SIHRIGAILGLGLAYAGS--QRE 486 (878)
T ss_pred hHHHHHHHhhcCCchhhhccceeeeeecccccccc------CHHHHHHHHhccCCC-ceeehHHhhhhHHhhcCC--chH
Confidence 35555566666777777666665554433321111 113445566677777 688888877777654422 233
Q ss_pred HHHhCCChHHHHHhhCCCC--HHHHHHHHHHHHHhhCCCc--hhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhh
Q 037562 319 VVIDHGAVPIFVKLLASPS--VDVRKQTVWALGNVAGDSP--RCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNF 394 (670)
Q Consensus 319 ~i~~~~~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~--~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l 394 (670)
.+. ..|..++.+.+ .++..-|.-+|+.+..+.. +.... .+..++..-.........+.....|+-+
T Consensus 487 ~V~-----~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~dvts~-----ilqtlmekse~El~d~~~RFL~LGL~ll 556 (878)
T KOG2005|consen 487 EVL-----ELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNEDVTSS-----ILQTLMEKSETELEDQWFRFLALGLALL 556 (878)
T ss_pred HHH-----HHHhHHhcCCCCchhHHHHHHhhcceeEEecCChHHHHH-----HHHHHHHhhhhhhhchHHHHHHHHHHHH
Confidence 322 24555665533 4566667777777664332 21111 1223332221111223333333333333
Q ss_pred hcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCc---cchhHHH
Q 037562 395 CRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSS---SVLTPAL 471 (670)
Q Consensus 395 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~---~v~~~a~ 471 (670)
..... ..+...+..++.-...++..+-..+...+.....+.-.+-+ ..+..+-...+. ..+..|+
T Consensus 557 flgkq--------e~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~----q~ll~~cgE~~~~~e~~~~~av 624 (878)
T KOG2005|consen 557 FLGKQ--------ESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQS----QLLLSFCGEHDADLESEQELAV 624 (878)
T ss_pred Hhccc--------chHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEech----hhhhhhcCCCccchhhhccchh
Confidence 33321 12222333333223333333333333333221111110100 112222222111 1222444
Q ss_pred HHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhH
Q 037562 472 RTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDT 551 (670)
Q Consensus 472 ~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 551 (670)
--++-++.+.+-..+. .+..+-.++..+ ++.+|+..-.+++-++..+|+ .++++.|-+...+.|.++
T Consensus 625 LgiAliAMgeeig~eM-----~lR~f~h~l~yg-e~~iRravPLal~llsvSNPq-------~~vlDtLsk~shd~D~ev 691 (878)
T KOG2005|consen 625 LGIALIAMGEEIGSEM-----VLRHFGHLLHYG-EPHIRRAVPLALGLLSVSNPQ-------VNVLDTLSKFSHDGDLEV 691 (878)
T ss_pred hhhhhhhhhhhhhhHH-----HHHHHHHHHHcC-CHHHHHHHHHHHhhhccCCCc-------chHHHHHHHhccCcchHH
Confidence 4455555544433332 345666778888 899999988888888777775 246778888888889999
Q ss_pred HHHHHHHHHHhcCCCCHHH
Q 037562 552 KKEAAWAISNATKFGTHEQ 570 (670)
Q Consensus 552 ~~~a~~aL~~l~~~~~~~~ 570 (670)
..+|+.+++-+....++..
T Consensus 692 a~naIfamGLiGAGTnNAR 710 (878)
T KOG2005|consen 692 AMNAIFAMGLIGAGTNNAR 710 (878)
T ss_pred HHHHHHHhccccCCcchHH
Confidence 9999999988776544433
No 316
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.69 E-value=37 Score=38.46 Aligned_cols=395 Identities=14% Similarity=0.121 Sum_probs=195.0
Q ss_pred hcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC--CChhhHHHHHhCC
Q 037562 247 VWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIAS--GTSENTKVVIDHG 324 (670)
Q Consensus 247 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~--~~~~~~~~i~~~~ 324 (670)
+++++.+.+...+..+.++-... .++....-+.--+|.++--+..-. ..+|...+.++..... .....++
T Consensus 476 LkaenkdlqaeVlnrmfkIftsh-peNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVtvvncvPeqE------ 547 (2799)
T KOG1788|consen 476 LKAENKDLQAEVLNRMFKIFTSH-PENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVTVVNCVPEQE------ 547 (2799)
T ss_pred HHhcCcchhhHHHHHHHHHhccC-hHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHhhhccCcHHH------
Confidence 45778888888888888775432 333333334556777777666554 4566555554433221 0111111
Q ss_pred ChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccC---ChhHHHHHHHHHHhhhcCCCC
Q 037562 325 AVPIFVKLLASP-SVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENA---NLSMLRTATWTLFNFCRGKPQ 400 (670)
Q Consensus 325 ~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~---~~~~~~~a~~~L~~l~~~~~~ 400 (670)
+-.|+-+|+.+ +..++...+.....+...+...++.+.+-|.++.|...++++. .++. ... .......++.
T Consensus 548 -LlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdq-ysg---vsehydrnps 622 (2799)
T KOG1788|consen 548 -LLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQ-YSG---VSEHYDRNPS 622 (2799)
T ss_pred -HHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcch-hhh---HHHHhhcCCC
Confidence 22455666653 3455666666667777777778888888898888877774421 0100 000 1111111111
Q ss_pred C-Chhhh---hhhHHHHHHhhccCC--hhHH------HHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchh
Q 037562 401 P-PFNQV---RPALPVLAQLIRSND--EEVL------TDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLT 468 (670)
Q Consensus 401 ~-~~~~~---~~~i~~L~~lL~~~~--~~v~------~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~ 468 (670)
. .+... ...+-.--++.++++ ..+. .-.-.+|..+..++.++...+.+..++..++.++- +++-|.
T Consensus 623 s~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpfli--ndehRS 700 (2799)
T KOG1788|consen 623 SPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFLI--NDEHRS 700 (2799)
T ss_pred CchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEeee--chHHHH
Confidence 1 00000 011101111222211 1111 11134555666666777777888888888888884 445677
Q ss_pred HHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCC-------c----hhHHHHHHHHHHHhhcCCHHHHHHHHhcCCh
Q 037562 469 PALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNH-------E----ESIKKEVSWIISNITCGNREQIQAVIDSGLI 537 (670)
Q Consensus 469 ~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~-------~----~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i 537 (670)
..++++..+....+.+.. ..-+-.+++.|+++. + ........+++..+..-+......+.+++++
T Consensus 701 slLrivscLitvdpkqvh----hqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGF 776 (2799)
T KOG1788|consen 701 SLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGF 776 (2799)
T ss_pred HHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccH
Confidence 888888888766554322 112334555555521 1 1233444556666655444555566777877
Q ss_pred HHHHHHhhc----------CChhHHHHHHHHHH---HhcCCCCHH-------------HHHHHHHcC---------CcHH
Q 037562 538 GPIVNLLQN----------TEFDTKKEAAWAIS---NATKFGTHE-------------QIKHLVREG---------CVKP 582 (670)
Q Consensus 538 ~~L~~ll~~----------~~~~v~~~a~~aL~---~l~~~~~~~-------------~~~~l~~~~---------~i~~ 582 (670)
..|...+.. +|.-+-..-...|. .++...++. ....+.+.| .+..
T Consensus 777 slLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viql 856 (2799)
T KOG1788|consen 777 SLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQL 856 (2799)
T ss_pred HHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHH
Confidence 777766541 11111111111111 111111111 222223333 1111
Q ss_pred HHhh-ccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 037562 583 LCDL-LLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETY 660 (670)
Q Consensus 583 L~~l-l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~ 660 (670)
+.++ ++.--+.....-..|...+++.+.+........+++++..+.+-.+|+...|-+-.-...+.++-.-..+++..
T Consensus 857 llElalevlvppfLtSEsaAcaeVfelednifavntPsGqfnpdk~~iynagavRvlirslLlnypK~qlefl~lleSl 935 (2799)
T KOG1788|consen 857 LLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESL 935 (2799)
T ss_pred HHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHH
Confidence 1111 11111111122233445555554433222222477888888888999999876655555566666666666554
No 317
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=87.54 E-value=4.7 Score=34.12 Aligned_cols=75 Identities=12% Similarity=-0.055 Sum_probs=62.7
Q ss_pred ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccC---CChHHHHHHHHHHHHHHHhhh
Q 037562 536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLC---ADPKIVTVCLEGLENILKVGV 610 (670)
Q Consensus 536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~---~~~~v~~~a~~~l~~l~~~~~ 610 (670)
++..|..-+.++++.++..|+..|-.+..++.+.+...+.....+..|+.++.. .++.|+..++..+........
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 456677778889999999999999999999888888888887788889998864 578899999999988876544
No 318
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=87.52 E-value=0.37 Score=25.94 Aligned_cols=18 Identities=22% Similarity=0.241 Sum_probs=13.4
Q ss_pred CccEEeEecCCCccccccC
Q 037562 156 SLEILVVNYCPNMKIFSGG 174 (670)
Q Consensus 156 ~L~~L~i~~C~~l~~~p~~ 174 (670)
+|+.|++++| +++.+|.+
T Consensus 1 ~L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp TESEEEETSS-EESEEGTT
T ss_pred CccEEECCCC-cCEeCChh
Confidence 4778888888 77777765
No 319
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=87.04 E-value=3.1 Score=37.62 Aligned_cols=137 Identities=7% Similarity=0.101 Sum_probs=89.3
Q ss_pred HHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccC----CchhHHHHHHHHHHHhhc-CCHHHHHHHHhcCChHHHHHH
Q 037562 469 PALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHN----HEESIKKEVSWIISNITC-GNREQIQAVIDSGLIGPIVNL 543 (670)
Q Consensus 469 ~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~----~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~l 543 (670)
.|+..+..++. .++....+.++.+--.+..++... .-.-+|..+.++++.+.. +++..+..+....++|.+.++
T Consensus 119 naL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI 197 (315)
T COG5209 119 NALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI 197 (315)
T ss_pred HHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence 35555555554 455555566665544444454322 134578889999999987 566777778889999999999
Q ss_pred hhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHH--------cCCcHHH-HhhccCCChHHHHHHHHHHHHHHHh
Q 037562 544 LQNTEFDTKKEAAWAISNATKFGTHEQIKHLVR--------EGCVKPL-CDLLLCADPKIVTVCLEGLENILKV 608 (670)
Q Consensus 544 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~--------~~~i~~L-~~ll~~~~~~v~~~a~~~l~~l~~~ 608 (670)
++.+++--+..|+..+..+... +...+++.+ +..+..+ .++.+.....+.+.++++..++...
T Consensus 198 me~gSElSktvaifI~qkil~d--DvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~ 269 (315)
T COG5209 198 MELGSELSKTVAIFIFQKILGD--DVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK 269 (315)
T ss_pred HHhhhHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence 9999888888888888888774 344444333 1122222 2234566677777787777666544
No 320
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=86.90 E-value=9.3 Score=33.55 Aligned_cols=146 Identities=10% Similarity=0.061 Sum_probs=83.5
Q ss_pred hhhhHHHHHHhhccC-ChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhc-CCCCccchhHHHHHHHHhhcCCch
Q 037562 406 VRPALPVLAQLIRSN-DEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELL-GHSSSSVLTPALRTIRNIVKGDDF 483 (670)
Q Consensus 406 ~~~~i~~L~~lL~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~ 483 (670)
....++.+..+++.+ +..+|..++++++.+..-++...+.+.... + ..- ...+......... ......
T Consensus 8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~---~~~~~~~~~~~~~~~l~-~~~~~~---- 77 (160)
T PF11865_consen 8 YPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--D---SKSSENSNDESTDISLP-MMGISP---- 77 (160)
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--C---ccccccccccchhhHHh-hccCCC----
Confidence 356778888888866 689999999999999877765544222110 0 000 0111111111111 111111
Q ss_pred hhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcC-CHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHh
Q 037562 484 QTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCG-NREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNA 562 (670)
Q Consensus 484 ~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 562 (670)
..+...-.-++..|+.+|++..-..-...++.++.++... ......++- .++|.+++.+++.+...++....-|+.+
T Consensus 78 ~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~--~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 78 SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP--QVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH--HHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 1222333346778888888774444555677777776642 222233332 3889999999877667777777666665
Q ss_pred c
Q 037562 563 T 563 (670)
Q Consensus 563 ~ 563 (670)
.
T Consensus 156 v 156 (160)
T PF11865_consen 156 V 156 (160)
T ss_pred H
Confidence 4
No 321
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=86.68 E-value=0.34 Score=45.03 Aligned_cols=110 Identities=17% Similarity=0.195 Sum_probs=52.3
Q ss_pred CCCCcEEEEecCCCCccccCCCccccccceeeecccc-cccccccchhhhcccccceecccccc--ccceeccccccccc
Q 037562 46 MNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCK-RLKIVLTSSIAKTLVRLRYMEIESCD--KITEIVLVDDVVAQ 122 (670)
Q Consensus 46 ~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~-~l~~l~~~~~~~~l~~L~~L~i~~c~--~l~~~~~~~~~~~~ 122 (670)
+..|+.|.+.+|. |.++ .+...+|+|+.|.++.-. .... .....+..+|+|++|.+++-. -++.+
T Consensus 42 ~~~le~ls~~n~g-ltt~-~~~P~Lp~LkkL~lsdn~~~~~~-~l~vl~e~~P~l~~l~ls~Nki~~lstl--------- 109 (260)
T KOG2739|consen 42 FVELELLSVINVG-LTTL-TNFPKLPKLKKLELSDNYRRVSG-GLEVLAEKAPNLKVLNLSGNKIKDLSTL--------- 109 (260)
T ss_pred ccchhhhhhhccc-eeec-ccCCCcchhhhhcccCCcccccc-cceehhhhCCceeEEeecCCcccccccc---------
Confidence 4555555555553 2111 122345677777765331 1110 011233455777777665432 11111
Q ss_pred ccccccccccccccccccccccccc--CCcccCCCCccEEeEecCCCc
Q 037562 123 DEVITFRELKELNLLQMQNLISFCS--GNCAFTFPSLEILVVNYCPNM 168 (670)
Q Consensus 123 ~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~~~~~L~~L~i~~C~~l 168 (670)
.....+++|..|.+.+|+-.. +-. ......+|+|..|+-.++..=
T Consensus 110 ~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 110 RPLKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred chhhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCCc
Confidence 122346667777777776554 100 011234677777776666553
No 322
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.24 E-value=0.13 Score=48.12 Aligned_cols=54 Identities=17% Similarity=0.254 Sum_probs=29.7
Q ss_pred CCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccc
Q 037562 46 MNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIE 105 (670)
Q Consensus 46 ~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~ 105 (670)
+.+.++|+.+||. |..+.- ...+|.|+.|.++ -.+++.+ ..+..+.+|++|++.
T Consensus 18 l~~vkKLNcwg~~-L~DIsi-c~kMp~lEVLsLS-vNkIssL---~pl~rCtrLkElYLR 71 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISI-CEKMPLLEVLSLS-VNKISSL---APLQRCTRLKELYLR 71 (388)
T ss_pred HHHhhhhcccCCC-ccHHHH-HHhcccceeEEee-ccccccc---hhHHHHHHHHHHHHH
Confidence 4566677777774 433321 1235666766665 2344444 445566666666664
No 323
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=86.17 E-value=39 Score=33.87 Aligned_cols=159 Identities=16% Similarity=0.184 Sum_probs=112.7
Q ss_pred hHHHHHhhccCCchhHHHHHHHHHHHhhc-CCHHHHHHHHhc-CC-hHHHHHHhhc-----CC--------hhHHHHHHH
Q 037562 494 LPYFLDMLVHNHEESIKKEVSWIISNITC-GNREQIQAVIDS-GL-IGPIVNLLQN-----TE--------FDTKKEAAW 557 (670)
Q Consensus 494 ~~~L~~~l~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~-~~-i~~L~~ll~~-----~~--------~~v~~~a~~ 557 (670)
++.+...|.+. ...+...+...+..++. ........+... ++ .+.+-.++.. ++ +.+|...+.
T Consensus 58 ~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~ 136 (330)
T PF11707_consen 58 LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR 136 (330)
T ss_pred HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence 77888889888 77888899999999988 665666666542 22 3344444431 11 289999999
Q ss_pred HHHHhcCCCCHHHHHHHHH-cCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHH
Q 037562 558 AISNATKFGTHEQIKHLVR-EGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLE 636 (670)
Q Consensus 558 aL~~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 636 (670)
.+..+...+++.....+++ .+.+..+.+-+..++++++..++..+..-+-.+....+ ......| ....+.
T Consensus 137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r--------~~K~~~f-n~~~L~ 207 (330)
T PF11707_consen 137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSR--------STKCKLF-NEWTLS 207 (330)
T ss_pred HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCCh--------hhhhhhc-CHHHHH
Confidence 9999998888887777765 56688888888888889999999999864443332221 1123333 445678
Q ss_pred HHHHhhcCCCH----HHHHHHHHHHHHhcC
Q 037562 637 KIENLQSHDDN----GISEKAVEILETYWS 662 (670)
Q Consensus 637 ~l~~L~~~~~~----~v~~~a~~~l~~~~~ 662 (670)
.|..|-...++ .+.+.+.+.+..+..
T Consensus 208 ~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT 237 (330)
T PF11707_consen 208 QLASLYSRDGEDEKSSVADLVHEFLLALCT 237 (330)
T ss_pred HHHHHhcccCCcccchHHHHHHHHHHHHhc
Confidence 88888777777 889999988887653
No 324
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=86.04 E-value=6.4 Score=33.31 Aligned_cols=74 Identities=12% Similarity=0.011 Sum_probs=60.9
Q ss_pred ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCC--hHHHHHHHHHHHHHHHhh
Q 037562 536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCAD--PKIVTVCLEGLENILKVG 609 (670)
Q Consensus 536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~--~~v~~~a~~~l~~l~~~~ 609 (670)
++..+..-+.++++.++..|+..|..+..++...+...+...+.+..|..++.... +.|+..++..+.......
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 45566777788999999999999999999988888888888889999999986643 338999988888876543
No 325
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=85.70 E-value=24 Score=31.96 Aligned_cols=71 Identities=18% Similarity=0.249 Sum_probs=55.6
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 037562 282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC 358 (670)
Q Consensus 282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 358 (670)
.++.++++..+++ ..++..|+..+..+....--+= ...+|.++.+..++++.++..|...+..+....+..
T Consensus 9 yl~~Il~~~~~~~-~~vr~~Al~~l~~il~qGLvnP-----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~ 79 (187)
T PF12830_consen 9 YLKNILELCLSSD-DSVRLAALQVLELILRQGLVNP-----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESL 79 (187)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHHHhcCCCCh-----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHH
Confidence 4667788888888 8999999999998876321110 136899999999999999999999999998655543
No 326
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=85.33 E-value=2.9 Score=46.18 Aligned_cols=127 Identities=15% Similarity=0.215 Sum_probs=90.6
Q ss_pred chhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh
Q 037562 466 VLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ 545 (670)
Q Consensus 466 v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~ 545 (670)
++..+.-++++++-..+...+ ..+|.+++-|.......+|...+.+++.+|..... +-...+|.+-..|.
T Consensus 947 vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTa-----m~d~YiP~I~~~L~ 1016 (1529)
T KOG0413|consen 947 VRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTA-----MTDRYIPMIAASLC 1016 (1529)
T ss_pred HHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHH-----HHHHhhHHHHHHhc
Confidence 677788889999875554333 46888999888775777888888888888764322 22357899999999
Q ss_pred cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCC--cHHHHhhccCCChHHHHHHHHHHHHHHHhh
Q 037562 546 NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGC--VKPLCDLLLCADPKIVTVCLEGLENILKVG 609 (670)
Q Consensus 546 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~--i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~ 609 (670)
++++-||+++...|.++.+.+- +.-.|. +..+..++ +.+++++.-+--.+..++...
T Consensus 1017 Dp~~iVRrqt~ilL~rLLq~~~------vKw~G~Lf~Rf~l~l~-D~~edIr~~a~f~~~~vL~~~ 1075 (1529)
T KOG0413|consen 1017 DPSVIVRRQTIILLARLLQFGI------VKWNGELFIRFMLALL-DANEDIRNDAKFYISEVLQSE 1075 (1529)
T ss_pred CchHHHHHHHHHHHHHHHhhhh------hhcchhhHHHHHHHHc-ccCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999988531 111221 33333343 577888888877787777653
No 327
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=85.02 E-value=2.3 Score=39.14 Aligned_cols=84 Identities=14% Similarity=0.192 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHHHHhcCCCCCcHHHHHHcC-------CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHH-HhC
Q 037562 252 NSLQLEATTLFINLLSFDRSPPIDEVIQSG-------VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVV-IDH 323 (670)
Q Consensus 252 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g-------~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i-~~~ 323 (670)
-+-|..|+.+|+++.-. ..+++.++.++ ++..|++++....++-.|+.|+-.|.+++.++......+ .+.
T Consensus 138 lSPqrlaLEaLcKLsV~--e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~ 215 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVI--ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQK 215 (257)
T ss_pred CCHHHHHHHHHHHhhee--ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhh
Confidence 36789999999999765 34555555544 455667777666558999999999999999776666444 467
Q ss_pred CChHHHHHhhCCCC
Q 037562 324 GAVPIFVKLLASPS 337 (670)
Q Consensus 324 ~~i~~L~~lL~~~~ 337 (670)
+.|..|+.++.+.+
T Consensus 216 ~~i~~Li~FiE~a~ 229 (257)
T PF12031_consen 216 PCISHLIAFIEDAE 229 (257)
T ss_pred chHHHHHHHHHHHH
Confidence 89999999997643
No 328
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=84.88 E-value=2.4 Score=38.49 Aligned_cols=72 Identities=11% Similarity=0.088 Sum_probs=55.4
Q ss_pred hhhHHHHHHhhc---------cCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHh
Q 037562 407 RPALPVLAQLIR---------SNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477 (670)
Q Consensus 407 ~~~i~~L~~lL~---------~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 477 (670)
.+++..|+..|. ..+......++.|+..+.....+....+...+++..++..|.+++..++..|+.+|+.+
T Consensus 106 ~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 106 LGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAAL 185 (187)
T ss_dssp HHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 455666665554 24567889999999999987766666555679999999999999999999999999887
Q ss_pred h
Q 037562 478 V 478 (670)
Q Consensus 478 ~ 478 (670)
|
T Consensus 186 c 186 (187)
T PF06371_consen 186 C 186 (187)
T ss_dssp H
T ss_pred H
Confidence 6
No 329
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=84.64 E-value=3.4 Score=35.40 Aligned_cols=74 Identities=15% Similarity=0.093 Sum_probs=61.3
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIAS 311 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 311 (670)
+++..+.+.+++.++.++..|+..|-.+..........++.+.+++..|+.++.....+.|+..++..+...+.
T Consensus 41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999998888765455567777888999999999754447999999998888775
No 330
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=84.40 E-value=3.5 Score=35.35 Aligned_cols=74 Identities=18% Similarity=0.127 Sum_probs=62.3
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIAS 311 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 311 (670)
+++..+.+.+++.++.++..|+..|-.++.........++....++..|+.++.....+.|+..+...+...+.
T Consensus 37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 55788889999999999999999999988876555667788888999999999884338999999999988875
No 331
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=84.20 E-value=14 Score=35.74 Aligned_cols=144 Identities=19% Similarity=0.191 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHcCCChhhHHHHHhCC--ChHHHHHhhC----CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcC--Ch
Q 037562 297 QLQFKAAWALTNIASGTSENTKVVIDHG--AVPIFVKLLA----SPSVDVRKQTVWALGNVAGDSPRCRDLVLSQG--AL 368 (670)
Q Consensus 297 ~v~~~a~~~L~~l~~~~~~~~~~i~~~~--~i~~L~~lL~----~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~--~i 368 (670)
+-+.-++..+.-++. ++.....+...+ +...+..++. ...+..+-.++++++|+..+.+ .+..+.... .+
T Consensus 78 ~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~~~~~~~~~~~~i 155 (268)
T PF08324_consen 78 ESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-GRQLLLSHFDSSI 155 (268)
T ss_dssp CC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-CHHHHHCTHHTCH
T ss_pred ccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-cHHHHHhcccchH
Confidence 345556666655555 555555554332 2334444332 2567888899999999987655 455554432 23
Q ss_pred HHHHHHhcccC---ChhHHHHHHHHHHhhhcCC--CCCChhhhhhhHHHHHHhhc--cCChhHHHHHHHHHHHhccCChH
Q 037562 369 IPLLAELNENA---NLSMLRTATWTLFNFCRGK--PQPPFNQVRPALPVLAQLIR--SNDEEVLTDACWALSYLSDGTND 441 (670)
Q Consensus 369 ~~Ll~~l~~~~---~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~i~~L~~lL~--~~~~~v~~~al~~L~~l~~~~~~ 441 (670)
...+..+.... +..++..++..+.|++-.. ...........+..+...+. ..|+++...++.+++++....+.
T Consensus 156 ~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~ 235 (268)
T PF08324_consen 156 LELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDS 235 (268)
T ss_dssp HHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChh
Confidence 33333332332 5678888888899987543 11122223345666666433 25899999999999999966554
Q ss_pred H
Q 037562 442 K 442 (670)
Q Consensus 442 ~ 442 (670)
.
T Consensus 236 ~ 236 (268)
T PF08324_consen 236 A 236 (268)
T ss_dssp H
T ss_pred H
Confidence 3
No 332
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=83.96 E-value=0.64 Score=26.25 Aligned_cols=16 Identities=31% Similarity=0.567 Sum_probs=12.6
Q ss_pred CCCccEEeEecCCCcc
Q 037562 154 FPSLEILVVNYCPNMK 169 (670)
Q Consensus 154 ~~~L~~L~i~~C~~l~ 169 (670)
+|+|+.|++.+|+++.
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4778888888888765
No 333
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.65 E-value=59 Score=36.01 Aligned_cols=185 Identities=13% Similarity=0.113 Sum_probs=88.2
Q ss_pred ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHc-C-------CHHHHHHhcCCCCccchhHHHHH
Q 037562 402 PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEA-G-------VYPRLVELLGHSSSSVLTPALRT 473 (670)
Q Consensus 402 ~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~-~-------~i~~L~~lL~~~~~~v~~~a~~~ 473 (670)
........+|.++..|+.+..-+-.+|+.++-.+..-.+.....+... . .+..+...++.+...--.....+
T Consensus 492 ~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKa 571 (960)
T KOG1992|consen 492 GKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKA 571 (960)
T ss_pred ChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHH
Confidence 344456788999999999999999999999987763333211111111 1 11222233333332222223333
Q ss_pred HHHhhcCCchhhHHHH---hCCChHHHHHhhccCCchhHHH---HHHHHHHHhhc-CCHHHHHHHHhcCChHHHHHHhhc
Q 037562 474 IRNIVKGDDFQTQCII---NCGALPYFLDMLVHNHEESIKK---EVSWIISNITC-GNREQIQAVIDSGLIGPIVNLLQN 546 (670)
Q Consensus 474 L~~l~~~~~~~~~~l~---~~~~~~~L~~~l~~~~~~~v~~---~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~ 546 (670)
+..+..-.++.+.... -.+..+.+.+.-+++.+|..-. ++..++.+.+. .++.....+ +...+|.+..++..
T Consensus 572 ImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs~~-e~aL~p~fq~Il~e 650 (960)
T KOG1992|consen 572 IMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVSSL-EEALFPVFQTILSE 650 (960)
T ss_pred HHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHHHH-HHHHHHHHHHHHHH
Confidence 3333222222221111 0122233333444443444333 33333333333 344433333 34567777777765
Q ss_pred CChhHHHHHHHHHHHhcCCC---CHHHHHH---------HH-HcCCcHHHHhhc
Q 037562 547 TEFDTKKEAAWAISNATKFG---THEQIKH---------LV-REGCVKPLCDLL 587 (670)
Q Consensus 547 ~~~~v~~~a~~aL~~l~~~~---~~~~~~~---------l~-~~~~i~~L~~ll 587 (670)
+-.+.--.+...++.+.... .++.... ++ ..|-++++++++
T Consensus 651 DI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl 704 (960)
T KOG1992|consen 651 DIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPPLLSPNLWKRSGNIPALVRLL 704 (960)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHhcCHHHHhhcCCcHHHHHHH
Confidence 55555555555555554332 2222222 22 267788888877
No 334
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=83.63 E-value=6.1 Score=34.95 Aligned_cols=112 Identities=24% Similarity=0.159 Sum_probs=73.5
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcC--ChHHHHHHhcccCChhHHHHHHHHHHhhhcCC---C
Q 037562 325 AVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQG--ALIPLLAELNENANLSMLRTATWTLFNFCRGK---P 399 (670)
Q Consensus 325 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~--~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~---~ 399 (670)
.+..+..++++.++.-|-.++..+.-.+..++ .+.+.+.+ .+..++..+.+..+..+.+.++.++..+.... +
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 45678888999888888888888888876542 23333332 37788888877777788889998888877544 3
Q ss_pred CCChhhh----hhhHHHHHHhhccCChhHHHHHHHHHHHhccCCh
Q 037562 400 QPPFNQV----RPALPVLAQLIRSNDEEVLTDACWALSYLSDGTN 440 (670)
Q Consensus 400 ~~~~~~~----~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~ 440 (670)
.-..... .++++.++++++. ......++.++..+....+
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP 146 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence 2222222 3445555555543 5666677777777665444
No 335
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=81.85 E-value=0.54 Score=44.51 Aligned_cols=124 Identities=16% Similarity=0.134 Sum_probs=70.1
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM 102 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L 102 (670)
.|.+++++.- .++.+.. .....|.++.|.++.-. +..+. +...+++|.+|++++- .|..+ ..|-..|-+.+.|
T Consensus 285 ~LtelDLS~N-~I~~iDE-SvKL~Pkir~L~lS~N~-i~~v~-nLa~L~~L~~LDLS~N-~Ls~~--~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 285 ELTELDLSGN-LITQIDE-SVKLAPKLRRLILSQNR-IRTVQ-NLAELPQLQLLDLSGN-LLAEC--VGWHLKLGNIKTL 357 (490)
T ss_pred hhhhcccccc-chhhhhh-hhhhccceeEEeccccc-eeeeh-hhhhcccceEeecccc-hhHhh--hhhHhhhcCEeee
Confidence 5666666532 2333333 34678899999987754 32332 3567889999999865 33333 1455567788888
Q ss_pred ccccccccceeccccccccccccccccccccccccc--cccccccccCCcccCCCCccEEeEecCC
Q 037562 103 EIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQ--MQNLISFCSGNCAFTFPSLEILVVNYCP 166 (670)
Q Consensus 103 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~--~~~l~~~~~~~~~~~~~~L~~L~i~~C~ 166 (670)
.+.+-. ++.+- ....+=+|..|++.+ -.+|... ...+.+|+|+.+.+.+-|
T Consensus 358 ~La~N~-iE~LS---------GL~KLYSLvnLDl~~N~Ie~ldeV---~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 358 KLAQNK-IETLS---------GLRKLYSLVNLDLSSNQIEELDEV---NHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ehhhhh-Hhhhh---------hhHhhhhheeccccccchhhHHHh---cccccccHHHHHhhcCCC
Confidence 775421 22211 112234455555543 1223222 225568899988888766
No 336
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=81.62 E-value=46 Score=31.57 Aligned_cols=96 Identities=19% Similarity=0.298 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCC-------HHHHHHHHHHHHHHcCCChhhHHHHHhCCC
Q 037562 253 SLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDY-------PQLQFKAAWALTNIASGTSENTKVVIDHGA 325 (670)
Q Consensus 253 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~-------~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~ 325 (670)
...+.|+..|..+- +...++.++++++.++. .-+-+...+++..++ .|-
T Consensus 57 ~~~~~a~~LLaq~r------------e~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~------------~G~ 112 (249)
T PF06685_consen 57 NLHFYALYLLAQFR------------EERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG------------DGD 112 (249)
T ss_pred HHHHHHHHHHHHHh------------hhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh------------CCC
Confidence 34566666666552 22378999999987662 012233333444443 466
Q ss_pred hHHHHHhhCCC--CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHH
Q 037562 326 VPIFVKLLASP--SVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAE 374 (670)
Q Consensus 326 i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~ 374 (670)
++.+.+++.++ +.-+|..|+.+|..++...+..|+.+.+ .+..++..
T Consensus 113 ~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~--~f~~ll~~ 161 (249)
T PF06685_consen 113 IEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQ--YFRELLNY 161 (249)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHH--HHHHHHHH
Confidence 88888888875 4678899999999999888888888765 35555554
No 337
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=81.47 E-value=5.3 Score=33.79 Aligned_cols=74 Identities=12% Similarity=0.026 Sum_probs=59.7
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHH-HHHHHHHHHHHHcC
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQ-LQFKAAWALTNIAS 311 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~-v~~~a~~~L~~l~~ 311 (670)
+++..+.+.+++.++.++..|+..|-.+..........++...+++..|..++....... |+..++..+...+.
T Consensus 37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence 557888899999999999999999998887754555667778889999999988765334 88888888877765
No 338
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=81.36 E-value=9.1 Score=32.75 Aligned_cols=74 Identities=11% Similarity=0.017 Sum_probs=59.1
Q ss_pred ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCC-ChH---HHHHHHHHHHHHHHhh
Q 037562 536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCA-DPK---IVTVCLEGLENILKVG 609 (670)
Q Consensus 536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~---v~~~a~~~l~~l~~~~ 609 (670)
++..|..-+.++++.++..|+..|..+..++.+.+...+.....+..|..++.+. ... |+..++..+...-...
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f 120 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF 120 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence 4556777788899999999999999999988778888877777888899988543 333 8899988888776554
No 339
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=81.09 E-value=51 Score=31.27 Aligned_cols=115 Identities=16% Similarity=0.185 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHH--------HHHHHHHHHHHhhCCCchhHHHHHhcCChH
Q 037562 298 LQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVD--------VRKQTVWALGNVAGDSPRCRDLVLSQGALI 369 (670)
Q Consensus 298 v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~--------v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~ 369 (670)
....|+..|+.+-. ..+++.++++++.++.. +-+....++..++ .|-+.
T Consensus 58 ~~~~a~~LLaq~re-----------~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~------------~G~~~ 114 (249)
T PF06685_consen 58 LHFYALYLLAQFRE-----------ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVG------------DGDIE 114 (249)
T ss_pred HHHHHHHHHHHHhh-----------hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHh------------CCCHH
Confidence 44555556555533 46789999999865542 1222223333333 24466
Q ss_pred HHHHHhcccC-ChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHh
Q 037562 370 PLLAELNENA-NLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYL 435 (670)
Q Consensus 370 ~Ll~~l~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l 435 (670)
.+..++.+.. +.-++..|+.+|..+....+..+...+.-.-..+-..+..++..+....+..+..+
T Consensus 115 ~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL 181 (249)
T PF06685_consen 115 PLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLVADICDL 181 (249)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhc
Confidence 6777774333 45677799999999999887666655554444444445545444444444444433
No 340
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=81.04 E-value=6 Score=33.66 Aligned_cols=73 Identities=11% Similarity=0.025 Sum_probs=60.1
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcC------CCCHHHHHHHHHHHHHHcC
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMR------QDYPQLQFKAAWALTNIAS 311 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~------~~~~~v~~~a~~~L~~l~~ 311 (670)
+++..+.+.+++.++.++..|+..|-.+..........++...+++..+++++.. .+ +.|+..++..+...+.
T Consensus 38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~-~~Vk~kil~li~~W~~ 116 (139)
T cd03567 38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTS-EKVKTKIIELLYSWTL 116 (139)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCC-HHHHHHHHHHHHHHHH
Confidence 4577888999999999999999999888876655666778888899999999963 34 7899999888887765
No 341
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=80.95 E-value=32 Score=30.38 Aligned_cols=113 Identities=16% Similarity=0.185 Sum_probs=69.1
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhC--CChHHHHHhhCC-CCHHHHHHHHHHHHHhh---CCC
Q 037562 282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDH--GAVPIFVKLLAS-PSVDVRKQTVWALGNVA---GDS 355 (670)
Q Consensus 282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~--~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~---~~~ 355 (670)
.+..+.+++++.+ ++-|-.++..+...+..++ .+.+.+. ..+..++..|+. ..+.+.+.++.++..+. .+.
T Consensus 26 l~~ri~~LL~s~~-~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~ 102 (165)
T PF08167_consen 26 LVTRINSLLQSKS-AYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK 102 (165)
T ss_pred HHHHHHHHhCCCC-hhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4566788888888 7888888888888876331 2333222 356777778876 45677888888888876 444
Q ss_pred chhHHHHHhcC---ChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCC
Q 037562 356 PRCRDLVLSQG---ALIPLLAELNENANLSMLRTATWTLFNFCRGKPQ 400 (670)
Q Consensus 356 ~~~~~~i~~~~---~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 400 (670)
++....+.... .+..+++++.+ ......++.+|..+....|.
T Consensus 103 p~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 103 PTLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLPHHPT 147 (165)
T ss_pred CchHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHCCc
Confidence 55433332221 23344444421 45556677777776665443
No 342
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=80.91 E-value=6 Score=36.60 Aligned_cols=85 Identities=13% Similarity=0.229 Sum_probs=61.7
Q ss_pred cchhHHHHHHHHhhcCCchhhHHHHhC-------CChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHH-HhcCC
Q 037562 465 SVLTPALRTIRNIVKGDDFQTQCIINC-------GALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAV-IDSGL 536 (670)
Q Consensus 465 ~v~~~a~~~L~~l~~~~~~~~~~l~~~-------~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l-~~~~~ 536 (670)
+-+.-|+.+++.++... .....+... .++..|..++....++..|+.|...|.+++.++......+ .+.+.
T Consensus 139 SPqrlaLEaLcKLsV~e-~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIE-NNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CHHHHHHHHHHHhheec-cCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 45788999999998633 223333322 3566677777777688999999999999999877665444 47888
Q ss_pred hHHHHHHhhcCChh
Q 037562 537 IGPIVNLLQNTEFD 550 (670)
Q Consensus 537 i~~L~~ll~~~~~~ 550 (670)
+..|+.++++.+..
T Consensus 218 i~~Li~FiE~a~~~ 231 (257)
T PF12031_consen 218 ISHLIAFIEDAEQN 231 (257)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999865443
No 343
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=80.42 E-value=35 Score=37.94 Aligned_cols=157 Identities=17% Similarity=0.211 Sum_probs=105.4
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562 239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK 318 (670)
Q Consensus 239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 318 (670)
.|..++..+.+.+..+..++-..+......+ .+. -++..|+...-+... ..|+.+|..+-. |..+
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~-~~~-------~l~~~l~~y~~~t~s----~~~~~il~~~~~--P~~K- 69 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSD-REP-------WLVNGLVDYYLSTNS----QRALEILVGVQE--PHDK- 69 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhcc-chH-------HHHHHHHHHHhhcCc----HHHHHHHHhcCC--ccHH-
Confidence 4778999999999888888888777665443 221 135666665444331 234445554432 3211
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC
Q 037562 319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK 398 (670)
Q Consensus 319 ~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~ 398 (670)
.++..|-..+.. +.-|-.++..|+.+....|..-..+.+...+..|++.|..+.+..+...|+.+|.-|.-.-
T Consensus 70 -----~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i 142 (668)
T PF04388_consen 70 -----HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI 142 (668)
T ss_pred -----HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc
Confidence 234455556654 4677789999999998877777888888999999999988899999999998888887665
Q ss_pred CCCChhhhhhhHHHHHHhh
Q 037562 399 PQPPFNQVRPALPVLAQLI 417 (670)
Q Consensus 399 ~~~~~~~~~~~i~~L~~lL 417 (670)
+.........++.....++
T Consensus 143 p~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 143 PSSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred cchhhHHHHHHHHHHHHHH
Confidence 5444444444555555555
No 344
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=80.31 E-value=1e+02 Score=34.28 Aligned_cols=400 Identities=12% Similarity=0.163 Sum_probs=193.8
Q ss_pred HHHHHHhcCC--ChHHHHHHHHHHHHHhcCC---CCCcHHHHHHcC---CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC
Q 037562 241 PAMVDGVWSD--DNSLQLEATTLFINLLSFD---RSPPIDEVIQSG---VVPRFVEFLMRQDYPQLQFKAAWALTNIASG 312 (670)
Q Consensus 241 ~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~g---~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 312 (670)
-.+++.+.++ |++++..|+-.+.|....+ ..+....+.+.. +-..++.++-+.. ..+|.+-..+++.++..
T Consensus 40 l~lL~Lv~~~~~d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s~-~~iQ~qlseal~~Ig~~ 118 (960)
T KOG1992|consen 40 LLLLNLVANGQQDPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSSP-FNIQKQLSEALSLIGKR 118 (960)
T ss_pred HHHHHHHhccCcChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHhcc
Confidence 4566666533 6788999999999887631 111111222211 2233456665655 68999999999999864
Q ss_pred C-hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC-CCchhH------HHHHhcC-ChHHHHHHhcc------
Q 037562 313 T-SENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAG-DSPRCR------DLVLSQG-ALIPLLAELNE------ 377 (670)
Q Consensus 313 ~-~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~-~~~~~~------~~i~~~~-~i~~Ll~~l~~------ 377 (670)
+ |+... ..++-|+.-+++.|-.+....+.+-..+.. ..++.| +.....+ .-.++..++..
T Consensus 119 DFP~kWp-----tLl~dL~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~ 193 (960)
T KOG1992|consen 119 DFPDKWP-----TLLPDLVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQ 193 (960)
T ss_pred ccchhhH-----HHHHHHHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHh
Confidence 4 33332 236677777776665444444333333331 111111 1111101 12233333311
Q ss_pred --cCChhHH-------HHHHHHHHhhhcCC-CCCChhhhhhhHHHHHHhhccCC-------------hhHHHHHHHHHHH
Q 037562 378 --NANLSML-------RTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLIRSND-------------EEVLTDACWALSY 434 (670)
Q Consensus 378 --~~~~~~~-------~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~~-------------~~v~~~al~~L~~ 434 (670)
..+.... .-.+.....|...+ |.--...+...++...+++..++ ..++..++..+.-
T Consensus 194 ~~~~~~~~l~~lf~vlll~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~L 273 (960)
T KOG1992|consen 194 RHANDAAALNILFGVLLLICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNL 273 (960)
T ss_pred hcccchhHHHHHHHHHHHHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHH
Confidence 1122211 12222333333332 11111223556666666665221 2456666776666
Q ss_pred hccCChHHHHHHHHcCCHHHHHHhcCCCCcc-----chhHHHHHHHHhhcCCchh--------h----------------
Q 037562 435 LSDGTNDKVQAVIEAGVYPRLVELLGHSSSS-----VLTPALRTIRNIVKGDDFQ--------T---------------- 485 (670)
Q Consensus 435 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~-----v~~~a~~~L~~l~~~~~~~--------~---------------- 485 (670)
.+...++..+.++. .++.....++.+..+. ....|+..|.+.+...... .
T Consensus 274 Y~~kYeEef~~fl~-~fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~ 352 (960)
T KOG1992|consen 274 YATKYEEEFQPFLP-DFVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILRE 352 (960)
T ss_pred HHHhhHHHHHhhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccch
Confidence 66655555554444 4555555666553322 4555667777766422111 1
Q ss_pred --HHHHhCCChHHHHHhhccCCchh-HHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh---cCChhHHHHHHHHH
Q 037562 486 --QCIINCGALPYFLDMLVHNHEES-IKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ---NTEFDTKKEAAWAI 559 (670)
Q Consensus 486 --~~l~~~~~~~~L~~~l~~~~~~~-v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~---~~~~~v~~~a~~aL 559 (670)
.++++.+-++.+-.-+... |.+ -|+.|+..++.++...+.....++.. .+..+++-.. +.+..-+..|.+.+
T Consensus 353 eDeElFED~pleYiRRDlEGs-DvdTRRR~a~dlvrgL~~~fe~~vt~v~~~-~v~~~l~~y~~nPS~nWk~kd~aiyL~ 430 (960)
T KOG1992|consen 353 EDEELFEDNPLEYIRRDLEGS-DVDTRRRAAIDLVRGLCKNFEGQVTGVFSS-EVQRLLDQYSKNPSGNWKKKDRAIYLV 430 (960)
T ss_pred hhHHHhccCHHHHHHHhcccC-CcchhHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHhccCCCccccccchhhhhh
Confidence 1122333444454555544 443 35667777888876544433333321 2333333222 34566677777777
Q ss_pred HHhcCCCCHHH-----------HHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHH
Q 037562 560 SNATKFGTHEQ-----------IKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQL 628 (670)
Q Consensus 560 ~~l~~~~~~~~-----------~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 628 (670)
..++..+.... ...+....+.+.|.+-=-.+.|-++..+++-+.. ++..- . .+
T Consensus 431 talaik~~t~~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~-FR~ql------------~--~~- 494 (960)
T KOG1992|consen 431 TALAIKGQTAKHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYT-FRNQL------------G--KE- 494 (960)
T ss_pred HHHHhhcchhhcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeee-ecccC------------C--hH-
Confidence 77776532111 0011111122221111112334444444433322 21110 0 11
Q ss_pred HHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCccc
Q 037562 629 VEEAEGLEKIENLQSHDDNGISEKAVEILETYWSSRVI 666 (670)
Q Consensus 629 ~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~~~~~~ 666 (670)
.-...++.+......++.-|+.+|+..+++++--++-
T Consensus 495 -~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~ 531 (960)
T KOG1992|consen 495 -HLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVREN 531 (960)
T ss_pred -HHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccC
Confidence 1223367777778888899999999999998755443
No 345
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=80.27 E-value=9 Score=32.43 Aligned_cols=74 Identities=19% Similarity=0.094 Sum_probs=59.3
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC--CCHHHHHHHHHHHHHHcC
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQ--DYPQLQFKAAWALTNIAS 311 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~--~~~~v~~~a~~~L~~l~~ 311 (670)
+++..|.+.++++++.++..|+..|-.+...........+....++..++.++... ..+.|+..++..+...+.
T Consensus 37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999888775344555666668888899999763 237999999999988776
No 346
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=80.01 E-value=4.7 Score=33.67 Aligned_cols=75 Identities=13% Similarity=0.151 Sum_probs=30.6
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCC-ccccccceeeecccccccccccchhhhcccccce
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSS-TSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY 101 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~-~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~ 101 (670)
+|+.+.+.+ .++.+.......+++|+.+.+.+ ++..++... ...++|+.+.+.+ .+..+. ......+++|+.
T Consensus 13 ~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~-~~~F~~~~~l~~ 85 (129)
T PF13306_consen 13 NLESITFPN--TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIG-DNAFSNCTNLKN 85 (129)
T ss_dssp T--EEEETS--T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE--TTTTTT-TTECE
T ss_pred CCCEEEECC--CeeEeChhhcccccccccccccc--cccccceeeeecccccccccccc--cccccc-cccccccccccc
Confidence 666666653 45555544334556677776654 344444321 2334566666643 333321 122334555665
Q ss_pred ecc
Q 037562 102 MEI 104 (670)
Q Consensus 102 L~i 104 (670)
+.+
T Consensus 86 i~~ 88 (129)
T PF13306_consen 86 IDI 88 (129)
T ss_dssp EEE
T ss_pred ccc
Confidence 555
No 347
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=79.94 E-value=1.1e+02 Score=34.60 Aligned_cols=114 Identities=14% Similarity=0.153 Sum_probs=71.6
Q ss_pred ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhcc
Q 037562 536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNT 615 (670)
Q Consensus 536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 615 (670)
+...+...+.+++.........++.++.........+ ...-.+.-..-.+..-..+......++.++....+
T Consensus 442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~~----- 513 (727)
T PF12726_consen 442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFDP----- 513 (727)
T ss_pred HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCH-----
Confidence 3455566666777788888888888877642111000 11111111111222222444555666666555433
Q ss_pred CCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCc
Q 037562 616 GTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYWSSR 664 (670)
Q Consensus 616 ~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~~~~ 664 (670)
......+.+.+....+..+.-|+++++++.|..++...|+.+
T Consensus 514 -------~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~ 555 (727)
T PF12726_consen 514 -------SHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVD 555 (727)
T ss_pred -------HHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCC
Confidence 235778888899999999999999999999999999999744
No 348
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=79.72 E-value=25 Score=37.61 Aligned_cols=173 Identities=15% Similarity=0.032 Sum_probs=102.5
Q ss_pred cCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhc--c---------CChhHHHHHHHHHHHhccCChHHHHHH
Q 037562 378 NANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIR--S---------NDEEVLTDACWALSYLSDGTNDKVQAV 446 (670)
Q Consensus 378 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~--~---------~~~~v~~~al~~L~~l~~~~~~~~~~~ 446 (670)
+++.++...|-..|..+... .....++..|..+.. . .++.++..++..|..=.. ..-
T Consensus 248 d~~~~V~~~ae~~LKr~~~~------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~------Aa~ 315 (501)
T PF13001_consen 248 DSNSSVSDRAEDLLKRLSVS------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVI------AAT 315 (501)
T ss_pred CCcchHHHHHHHHHhhcCCC------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHH------HHh
Confidence 34456666666666666554 112455666666655 2 356777777666654211 001
Q ss_pred HHcCCHHHHHHhcCCC--CccchhHHHHHH---HHhhcCCchh-h---HHHHhCCChHHHHH----hhccCCchhHHHHH
Q 037562 447 IEAGVYPRLVELLGHS--SSSVLTPALRTI---RNIVKGDDFQ-T---QCIINCGALPYFLD----MLVHNHEESIKKEV 513 (670)
Q Consensus 447 ~~~~~i~~L~~lL~~~--~~~v~~~a~~~L---~~l~~~~~~~-~---~~l~~~~~~~~L~~----~l~~~~~~~v~~~a 513 (670)
.....+..+...+.+. +.+++..++..+ .....+.... . ...+..++.+.+-. --... +...|..+
T Consensus 316 ~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~-~~~lR~~a 394 (501)
T PF13001_consen 316 SFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSE-DIELRSLA 394 (501)
T ss_pred CCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcc-cHHHHHHH
Confidence 1123444455555555 567777777777 5555443322 2 22234444444410 01123 77899999
Q ss_pred HHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCC
Q 037562 514 SWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKF 565 (670)
Q Consensus 514 ~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 565 (670)
..+++.++...+.... -+-+++..|.+.+..++++++...-.||..++..
T Consensus 395 Ye~lG~L~~~~p~l~~--~d~~li~~LF~sL~~~~~evr~sIqeALssl~~a 444 (501)
T PF13001_consen 395 YETLGLLAKRAPSLFS--KDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPA 444 (501)
T ss_pred HHHHHHHHccCccccc--ccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHH
Confidence 9999999987665321 1345688888888888899999999999988764
No 349
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=79.52 E-value=85 Score=32.85 Aligned_cols=260 Identities=11% Similarity=0.103 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhC----CCchhHHHHHhcCChHH
Q 037562 296 PQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSVDVRKQTVWALGNVAG----DSPRCRDLVLSQGALIP 370 (670)
Q Consensus 296 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~----~~~~~~~~i~~~~~i~~ 370 (670)
+.+.....+++..+...-......++. ..+..+....++ .++..-.....+++.+.. .+++... -++...+|+
T Consensus 44 eylMk~iMRvl~~~~e~~~p~~~~il~-~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~-~~E~~L~P~ 121 (435)
T PF03378_consen 44 EYLMKCIMRVLSVLQEDILPIAVEILQ-HLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVS-QFEEALFPP 121 (435)
T ss_dssp HHHHHHHHHHHHHSTTTTGGGHHHHHH-HHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH----HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHH-HHHHHHHHH
Confidence 556666666665554433333333332 233344444455 456666655555555542 2222111 223345777
Q ss_pred HHHHhcccCChhHHHHHHHHHHhhhcCCC-CCChhhhhhhHHHHHHh-hccCChhHHHHHHHHHHHhccCChHHHHHHHH
Q 037562 371 LLAELNENANLSMLRTATWTLFNFCRGKP-QPPFNQVRPALPVLAQL-IRSNDEEVLTDACWALSYLSDGTNDKVQAVIE 448 (670)
Q Consensus 371 Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~i~~L~~l-L~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~ 448 (670)
+...| ..+-.+..-++..+++.+.+..+ ..........+|.++.- +-.....+ -...+.|.......+.. +..
T Consensus 122 f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~---i~~ 196 (435)
T PF03378_consen 122 FQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSF---IVA 196 (435)
T ss_dssp HHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG------
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchh---hcc
Confidence 77777 44445666677777777776654 22222333344433321 11111111 12222333222211111 111
Q ss_pred c----CCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchh-hHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc-
Q 037562 449 A----GVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQ-TQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC- 522 (670)
Q Consensus 449 ~----~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~- 522 (670)
. +++..+.+++.+... -..+...|..+...-+.. ....+ ..++..+..-|++...+...+.-+..++.++.
T Consensus 197 ~~~l~~iLgvFQkLi~sk~~--D~~gF~LL~~iv~~~p~~~l~~yl-~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~ 273 (435)
T PF03378_consen 197 NNQLEPILGVFQKLIASKAN--DHYGFDLLESIVENLPPEALEPYL-KQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIK 273 (435)
T ss_dssp -S-CHHHHHHHHHHHT-TTC--HHHHHHHHHHHHHHS-HHHHGGGH-HHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHCCCCc--chHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHH
Confidence 1 334445566666442 345667777776544431 12111 13455566666655455665555555555543
Q ss_pred CCHHHHHHHH---hcCChHHHHHHh-----hc-CChhHHHHHHHHHHHhcCC
Q 037562 523 GNREQIQAVI---DSGLIGPIVNLL-----QN-TEFDTKKEAAWAISNATKF 565 (670)
Q Consensus 523 ~~~~~~~~l~---~~~~i~~L~~ll-----~~-~~~~v~~~a~~aL~~l~~~ 565 (670)
.+++..-..+ +.|+...++.-+ +. ....-|+.++-++.++...
T Consensus 274 ~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~e 325 (435)
T PF03378_consen 274 YGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCE 325 (435)
T ss_dssp H-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhc
Confidence 3344333333 245554444421 11 2334466677777776543
No 350
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=79.36 E-value=30 Score=28.63 Aligned_cols=72 Identities=14% Similarity=0.150 Sum_probs=51.9
Q ss_pred ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHc-CCcHHHHhhccCC--------ChHHHHHHHHHHHHHH
Q 037562 536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVRE-GCVKPLCDLLLCA--------DPKIVTVCLEGLENIL 606 (670)
Q Consensus 536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~-~~i~~L~~ll~~~--------~~~v~~~a~~~l~~l~ 606 (670)
++..|.+-|++.++.|+..|+..|..++..|++.+...+.+. ..|..+.+.-... ...||..|-+++..++
T Consensus 39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 456778888888899999999999999999988887776653 2344444433222 2358888888887776
Q ss_pred H
Q 037562 607 K 607 (670)
Q Consensus 607 ~ 607 (670)
.
T Consensus 119 ~ 119 (122)
T cd03572 119 S 119 (122)
T ss_pred c
Confidence 4
No 351
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=78.74 E-value=24 Score=34.44 Aligned_cols=70 Identities=14% Similarity=0.288 Sum_probs=48.7
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-HHHHhCCChHHHHHh----hC--------CCCHHHHHHHHHHH
Q 037562 282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT-KVVIDHGAVPIFVKL----LA--------SPSVDVRKQTVWAL 348 (670)
Q Consensus 282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~i~~~~~i~~L~~l----L~--------~~~~~v~~~a~~~L 348 (670)
++|.++.++++.+ +.++..++.+|..+....+... ..+.+.|..+.+-+. +. .++..+...|.-++
T Consensus 120 iiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L 198 (282)
T PF10521_consen 120 IIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL 198 (282)
T ss_pred HHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence 6899999999998 8999999999999987433332 235566665554443 32 24455666777777
Q ss_pred HHhh
Q 037562 349 GNVA 352 (670)
Q Consensus 349 ~~l~ 352 (670)
..++
T Consensus 199 ~~L~ 202 (282)
T PF10521_consen 199 LSLL 202 (282)
T ss_pred HHHH
Confidence 7764
No 352
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=78.54 E-value=1.6 Score=45.30 Aligned_cols=60 Identities=20% Similarity=0.314 Sum_probs=42.9
Q ss_pred cCCCCcEEEEecCCCCccccCCCcccc-ccceeeecccccccccccchhhhcccccceecccccc
Q 037562 45 VMNNLVILCVHCCDHLINLVPSSTSFQ-NLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCD 108 (670)
Q Consensus 45 ~~~~L~~L~i~~c~~l~~~~~~~~~~~-~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 108 (670)
.++.+..|.+.+ ..+..+++....+. +|+.|++++= .++.+. .....+++|+.|.+.+++
T Consensus 114 ~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~--~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 114 ELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDN-KIESLP--SPLRNLPNLKNLDLSFND 174 (394)
T ss_pred cccceeEEecCC-cccccCccccccchhhccccccccc-chhhhh--hhhhccccccccccCCch
Confidence 345677777744 34667777666674 9999999865 444441 466889999999999886
No 353
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=77.99 E-value=1e+02 Score=40.38 Aligned_cols=304 Identities=11% Similarity=0.015 Sum_probs=142.9
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC------C--hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC
Q 037562 282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASG------T--SENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAG 353 (670)
Q Consensus 282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~------~--~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 353 (670)
.++.++..+..++ +.+...+..++..+-.. + ...+-.+. .+.++.+.++..++...-+...+..|..+..
T Consensus 985 ~ldal~~~l~~~~-~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~-~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen 985 FLDALVESLSHEN-SEMRPAGVRALKVIFSTSTLILGSPERAFKLPMF-EYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred HHHHHHHHHhccc-hhhhhhHHHHHHHHHHHHHHhhcCcchhhccchH-HHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence 5777788888777 67777777766665430 0 11111111 1334444444444444444444445555544
Q ss_pred CCchhHHHHHh--cCChHHHHHHhcccCCh------hHHH-HHHHHHHhhhcCC--CCCChhhhhhhHHHHHHhhccCCh
Q 037562 354 DSPRCRDLVLS--QGALIPLLAELNENANL------SMLR-TATWTLFNFCRGK--PQPPFNQVRPALPVLAQLIRSNDE 422 (670)
Q Consensus 354 ~~~~~~~~i~~--~~~i~~Ll~~l~~~~~~------~~~~-~a~~~L~~l~~~~--~~~~~~~~~~~i~~L~~lL~~~~~ 422 (670)
+.+ ...+.+ ...+.++...+.+.... +... .....+....... +........+.+..++.-+.++++
T Consensus 1063 ~~~--~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~ 1140 (3550)
T KOG0889|consen 1063 SMP--SLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNS 1140 (3550)
T ss_pred hch--HHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCch
Confidence 443 122211 23345555555332211 1111 1122222222211 222333446777888888889999
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHc--CC--HHHHHHhcCCCCccchhHHHHHHHHhhcCCchhh---HHHHh-----
Q 037562 423 EVLTDACWALSYLSDGTNDKVQAVIEA--GV--YPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQT---QCIIN----- 490 (670)
Q Consensus 423 ~v~~~al~~L~~l~~~~~~~~~~~~~~--~~--i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~---~~l~~----- 490 (670)
.|+..+..+|.+++.....-...+++. .+ ++....-+....-.++...+.++..++...+... ..+..
T Consensus 1141 ~VR~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~l~p~~f~~~~~l~~l~~~~ 1220 (3550)
T KOG0889|consen 1141 DVREFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLSLGPCLFDFTEELYRLKRFL 1220 (3550)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHHcCCcccCchHHHHHHHHHH
Confidence 999999999999986542222222221 11 1111111222222334444444444433222111 10100
Q ss_pred --------CCChHHHHHhhccCC---chhHHHHHHHHHHHhhcCCHHHHHH--HHhcCChHHHHHHhhcCChhHHHHHHH
Q 037562 491 --------CGALPYFLDMLVHNH---EESIKKEVSWIISNITCGNREQIQA--VIDSGLIGPIVNLLQNTEFDTKKEAAW 557 (670)
Q Consensus 491 --------~~~~~~L~~~l~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~--l~~~~~i~~L~~ll~~~~~~v~~~a~~ 557 (670)
...+. +........ ....|..+..+++......+..... -...+++..+...+....+++...+..
T Consensus 1221 ~~La~~~~~~~~~-i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~ 1299 (3550)
T KOG0889|consen 1221 IALADAEEDELAT-IQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALE 1299 (3550)
T ss_pred HHhhhhhhhhhhh-hhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 00000 111111110 1123445555555544322211111 123457788888888888999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCC
Q 037562 558 AISNATKFGTHEQIKHLVREGCVKPLCDLLLCAD 591 (670)
Q Consensus 558 aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~ 591 (670)
++.+.... ++..-+..++.+.-+.|..+-++.+
T Consensus 1300 ~l~~v~~~-~~~~~ke~lq~~lrplL~~l~d~~~ 1332 (3550)
T KOG0889|consen 1300 GLRKVLAQ-DVKLPKELLQSHLRPLLMNLSDHNN 1332 (3550)
T ss_pred HHHhhhhc-cccccHHHHHhhHHHHHHhhhHhhh
Confidence 98887764 3444455566655555555555444
No 354
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=77.41 E-value=1 Score=41.97 Aligned_cols=111 Identities=20% Similarity=0.140 Sum_probs=64.5
Q ss_pred ccccccceeeecccccccccccchhhhcccccceeccccccccceecccccccccccccccccccccccccc--cccccc
Q 037562 68 TSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQM--QNLISF 145 (670)
Q Consensus 68 ~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~ 145 (670)
..|.+|+.|.+.+|.- +.+ ..+..||+|++|.+++= ...-.. .........|+|++|.+++- .-+.++
T Consensus 40 d~~~~le~ls~~n~gl-tt~---~~~P~Lp~LkkL~lsdn-~~~~~~-----~l~vl~e~~P~l~~l~ls~Nki~~lstl 109 (260)
T KOG2739|consen 40 DEFVELELLSVINVGL-TTL---TNFPKLPKLKKLELSDN-YRRVSG-----GLEVLAEKAPNLKVLNLSGNKIKDLSTL 109 (260)
T ss_pred ccccchhhhhhhccce-eec---ccCCCcchhhhhcccCC-cccccc-----cceehhhhCCceeEEeecCCcccccccc
Confidence 3567888888888843 333 45567899999988643 111000 00111234588998887752 223333
Q ss_pred ccCCcccCCCCccEEeEecCCCcccccc----CCcCCCCccceeeeeccCC
Q 037562 146 CSGNCAFTFPSLEILVVNYCPNMKIFSG----GELSTPNLHKVQLSRWDGE 192 (670)
Q Consensus 146 ~~~~~~~~~~~L~~L~i~~C~~l~~~p~----~~~~~~~L~~l~i~~~~~~ 192 (670)
.. ...+++|..|...+|+-.. +-. ....+|+|+.|+-.++.+.
T Consensus 110 ~p---l~~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 110 RP---LKELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred ch---hhhhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCCc
Confidence 22 3456778889999998655 211 1224788888876555544
No 355
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=76.15 E-value=18 Score=36.52 Aligned_cols=214 Identities=17% Similarity=0.122 Sum_probs=108.7
Q ss_pred HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC--Cc
Q 037562 279 QSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGD--SP 356 (670)
Q Consensus 279 ~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~ 356 (670)
...++..+..++..+.++.....++.++..-...- ..-+...+++.+.+-+++..+.+|..-+..++..... +.
T Consensus 20 s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~ 95 (339)
T PF12074_consen 20 SSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNS 95 (339)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCc
Confidence 33456677777777655677777777776644311 0111224566777778887777999888888887751 11
Q ss_pred hhHHHHHhcCChHHHHHHhccc---CChhHH---HHHHHHHHhhhcCCCCCChhhhhhhH--------HHH---HHhhcc
Q 037562 357 RCRDLVLSQGALIPLLAELNEN---ANLSML---RTATWTLFNFCRGKPQPPFNQVRPAL--------PVL---AQLIRS 419 (670)
Q Consensus 357 ~~~~~i~~~~~i~~Ll~~l~~~---~~~~~~---~~a~~~L~~l~~~~~~~~~~~~~~~i--------~~L---~~lL~~ 419 (670)
..... -...++.+++.+... +-+..+ -.++.++..+.... ........... |.+ -++...
T Consensus 96 ~~~~~--~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~-~~~~~~~~~~~~~l~~~~kps~ll~~kvysk 172 (339)
T PF12074_consen 96 DSLKF--AEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWK-LDKIDSKNISFWSLALDPKPSFLLSEKVYSK 172 (339)
T ss_pred hHHHH--HHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhcccc-chhhhhhhhhhhhhccCCCcchhcCHHHHhc
Confidence 11111 122566777766321 111111 11222222211111 00000000000 000 022222
Q ss_pred -CChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCC--CccchhHHHHHHHHhhcCCchhhHHHHhCCChHH
Q 037562 420 -NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHS--SSSVLTPALRTIRNIVKGDDFQTQCIINCGALPY 496 (670)
Q Consensus 420 -~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~ 496 (670)
.+++-....++++..+..........-....+-+.++.++-+. .+++|..|+.++..+...++.. +...++..
T Consensus 173 l~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~ 248 (339)
T PF12074_consen 173 LASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISG 248 (339)
T ss_pred cCCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHH
Confidence 4455555666666666544332211111223557788888777 7889999999999998766653 22234455
Q ss_pred HHHhhcc
Q 037562 497 FLDMLVH 503 (670)
Q Consensus 497 L~~~l~~ 503 (670)
+.+.+..
T Consensus 249 l~~~l~~ 255 (339)
T PF12074_consen 249 LWKWLSS 255 (339)
T ss_pred HHHHHHh
Confidence 5555543
No 356
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=75.63 E-value=1.3e+02 Score=33.11 Aligned_cols=104 Identities=12% Similarity=0.107 Sum_probs=72.5
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHH
Q 037562 283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLV 362 (670)
Q Consensus 283 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i 362 (670)
|..|..+-.++- ++++.+|+..+..+....|+.-.. ++..++.-|.+++..+...|...|.+|....|..+..+
T Consensus 306 ievLe~lS~D~L-~~vk~raL~ti~~lL~~kPEqE~~-----LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv 379 (988)
T KOG2038|consen 306 IEVLEELSKDPL-EEVKKRALKTIYDLLTNKPEQENN-----LLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVV 379 (988)
T ss_pred HHHHHHHccccH-HHHHHHHHHHHHHHHhCCcHHHHH-----HHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeeh
Confidence 444444444455 799999999999988866765443 46688999999999999999999999998888766554
Q ss_pred HhcCChHHHHHHhc-ccCChhHHHHHHHHHHhhhcC
Q 037562 363 LSQGALIPLLAELN-ENANLSMLRTATWTLFNFCRG 397 (670)
Q Consensus 363 ~~~~~i~~Ll~~l~-~~~~~~~~~~a~~~L~~l~~~ 397 (670)
+..+-+++. .+.+.....+|+.+|..+.-.
T Consensus 380 -----i~EIer~~FRpn~~~ra~Yyav~fLnQ~~Ls 410 (988)
T KOG2038|consen 380 -----IDEIERLAFRPNVSERAHYYAVIFLNQMKLS 410 (988)
T ss_pred -----HHHHHHHHcccCccccceeehhhhhhhhHhc
Confidence 344444442 333444555677777665544
No 357
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=75.39 E-value=36 Score=43.12 Aligned_cols=265 Identities=13% Similarity=0.176 Sum_probs=140.4
Q ss_pred hcCCChHHHHHHHHHHHHHhcCCCC--CcHHHHH--HcCCHHHHHHhh-cCCCCHHHHHHHHHHHHHHcCCChhhHHHHH
Q 037562 247 VWSDDNSLQLEATTLFINLLSFDRS--PPIDEVI--QSGVVPRFVEFL-MRQDYPQLQFKAAWALTNIASGTSENTKVVI 321 (670)
Q Consensus 247 l~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~--~~g~l~~L~~ll-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 321 (670)
+..++++++..+...+..+...... +...... ....+..+..+- .+++ +.++......+. ...-....
T Consensus 490 ~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~-~~i~~~v~~~l~------~~~~~~la 562 (2341)
T KOG0891|consen 490 LEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTD-PDIRIRVLSSLN------ERFDAQLA 562 (2341)
T ss_pred HhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCC-cchhhhHHhhhc------cchhhhhc
Confidence 3457788888887766665443201 0000001 112233333322 2344 566665544443 22222344
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc---ccCChhHHHHHHHHHHhhhcCC
Q 037562 322 DHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELN---ENANLSMLRTATWTLFNFCRGK 398 (670)
Q Consensus 322 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~---~~~~~~~~~~a~~~L~~l~~~~ 398 (670)
..+.+..+...+.++.-.++..+...+++++..+|...-..+. ...+..+. .+.-..+....+.-+..+....
T Consensus 563 Q~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr----~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~ 638 (2341)
T KOG0891|consen 563 QPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLR----KTLLELLTELEFSGMARTKEESAKLLCELIISS 638 (2341)
T ss_pred CchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHH----HHHHHHhchhhhcchHHhHHHHHHHhhHHHHHH
Confidence 4555666777777788889999999999999876632111111 11111111 1111111111111111111111
Q ss_pred CCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC-CCccchhHHHHHHHHh
Q 037562 399 PQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH-SSSSVLTPALRTIRNI 477 (670)
Q Consensus 399 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l 477 (670)
+.-....+...+..++..+.+.+..+...++.+++.|+...........+ ..++.+.+.+.+ .+..-+..+.++++++
T Consensus 639 ~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l 717 (2341)
T KOG0891|consen 639 PVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQL 717 (2341)
T ss_pred HHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhh
Confidence 11111122344566677777888888888999999988655433433444 556666666655 4555678899999999
Q ss_pred hcCCchhhHHHH-hCCChHHHHHhhccCCchhHHHHHHHHHHHhhcC
Q 037562 478 VKGDDFQTQCII-NCGALPYFLDMLVHNHEESIKKEVSWIISNITCG 523 (670)
Q Consensus 478 ~~~~~~~~~~l~-~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 523 (670)
............ -..++..+...+.......++.++...++++...
T Consensus 718 ~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~ 764 (2341)
T KOG0891|consen 718 ESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL 764 (2341)
T ss_pred hcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence 875433222111 2245666667776665677888888888877553
No 358
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=75.30 E-value=4 Score=36.68 Aligned_cols=88 Identities=18% Similarity=0.195 Sum_probs=37.2
Q ss_pred cccccceeeecccccccccccchhhhcccccceeccccccccceecccccccccccccccccccccccccccccccc-cc
Q 037562 69 SFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISF-CS 147 (670)
Q Consensus 69 ~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~ 147 (670)
.+++|..|.+.+- +++.+- +.....+|+|+.|.+.+-. +.++-. -...-.+|+|++|++.+-|--..- +-
T Consensus 62 ~l~rL~tLll~nN-rIt~I~-p~L~~~~p~l~~L~LtnNs-i~~l~d------l~pLa~~p~L~~Ltll~Npv~~k~~YR 132 (233)
T KOG1644|consen 62 HLPRLHTLLLNNN-RITRID-PDLDTFLPNLKTLILTNNS-IQELGD------LDPLASCPKLEYLTLLGNPVEHKKNYR 132 (233)
T ss_pred CccccceEEecCC-cceeec-cchhhhccccceEEecCcc-hhhhhh------cchhccCCccceeeecCCchhcccCce
Confidence 3455555555432 333331 1223345666666665421 111100 012234667777766654321100 00
Q ss_pred CCcccCCCCccEEeEecC
Q 037562 148 GNCAFTFPSLEILVVNYC 165 (670)
Q Consensus 148 ~~~~~~~~~L~~L~i~~C 165 (670)
.-....+|+|+.|++..-
T Consensus 133 ~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 133 LYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eEEEEecCcceEeehhhh
Confidence 001234566666666543
No 359
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.83 E-value=2.4 Score=40.44 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=21.5
Q ss_pred ccccEEEeccCcCcccccccccccCCCCcEEEEecC
Q 037562 22 MEVKISEAYNCYRLENILIEESSVMNNLVILCVHCC 57 (670)
Q Consensus 22 ~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c 57 (670)
+.|+.|+|+ |..|.......+-...+|+.|-+.+-
T Consensus 97 P~l~~LNls-~N~L~s~I~~lp~p~~nl~~lVLNgT 131 (418)
T KOG2982|consen 97 PALTTLNLS-CNSLSSDIKSLPLPLKNLRVLVLNGT 131 (418)
T ss_pred ccceEeecc-CCcCCCccccCcccccceEEEEEcCC
Confidence 388888875 65565433322234568888887664
No 360
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=74.62 E-value=28 Score=34.61 Aligned_cols=73 Identities=11% Similarity=0.046 Sum_probs=62.9
Q ss_pred CChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhcc-CCChHHHHHHHHHHHHHHH
Q 037562 535 GLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLL-CADPKIVTVCLEGLENILK 607 (670)
Q Consensus 535 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~~l~~l~~ 607 (670)
.++..+.+-+.+.++.|...|+..+..+..++....+..+...+....|..++. ...+.|+.+....+..+.+
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 457778888999999999999999999999888888888888999999999998 6788888887777777665
No 361
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.36 E-value=1.5e+02 Score=33.16 Aligned_cols=252 Identities=13% Similarity=0.076 Sum_probs=146.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 037562 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKV 319 (670)
Q Consensus 240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 319 (670)
...+=+.++++....+.++...+.++-... +. ..++. ..+=.|......++ ..+|...+++...-.. ....
T Consensus 26 ~~~ldkGlr~~~t~eqpeavvr~~RLFek~--Pf-pifiN-s~llrLaDaF~~Gn-~llRf~V~rv~~q~g~----hln~ 96 (970)
T KOG1988|consen 26 LMELDKGLRSGKTSEQPEAVVRFPRLFEKY--PF-PIFIN-SQLLRLADAFPVGN-NLLRFAVLRVDQQSGK----HLNK 96 (970)
T ss_pred HHHHhhcccccccccchHHHHHHHHHHhhC--Cc-hhhhh-HHHHHHHHHhccCc-HHHHHHHHHHHhhccc----cchh
Confidence 444555666666666666766666664432 11 22222 23445556666677 5888888888774322 2222
Q ss_pred HH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC
Q 037562 320 VI-DHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK 398 (670)
Q Consensus 320 i~-~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~ 398 (670)
+. ....+..+.....+.|+.-|..++..++.++.--| +.+..+.++..-.++.++--.+.|+.+..+++...
T Consensus 97 v~n~aE~lrri~~V~hsnDp~aRAllL~ilg~~s~lip-------Efn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa~s 169 (970)
T KOG1988|consen 97 VLNGAEFLRRIFYVDHSNDPVARALLLRILGQLSALIP-------EFNQVHHLIRISLDSHHELEVEAAEFAAACFAAQS 169 (970)
T ss_pred hhhhhhhhheeEEeecCCCHHHHHHHHHHHHHhhhhcc-------cccchhHHHHHHhcCccchhhHHHHHHHhhhhhhh
Confidence 22 22344444455667899999999999999875444 33456666665545555444567777777777653
Q ss_pred CCCChhhhhhhHHHHHHhhccCC--hhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC-CCccchhHHHHHHH
Q 037562 399 PQPPFNQVRPALPVLAQLIRSND--EEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH-SSSSVLTPALRTIR 475 (670)
Q Consensus 399 ~~~~~~~~~~~i~~L~~lL~~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~ 475 (670)
. ....++...+-.++...+ ...+...+.+++.+..... ....+....+.++.. +..+....-+.++.
T Consensus 170 k----~FA~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at------~A~ra~~l~m~lv~~tps~d~~v~fL~stT 239 (970)
T KOG1988|consen 170 K----DFACSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHAT------GASRAFGLCMSLVSGTPSIDRVVAFLYSTT 239 (970)
T ss_pred h----hhHHHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhh------hhHHHHHHHHHHhcCCCcccceeeehhhhH
Confidence 1 111233444555555443 4556667777777764321 222445566666654 34444455666777
Q ss_pred HhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc
Q 037562 476 NIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC 522 (670)
Q Consensus 476 ~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 522 (670)
+++...- ..-.+-+..+.+.++.+....++..+.|-+.+++.
T Consensus 240 ~Lasrs~-----~ai~eq~d~l~q~~ked~~kivr~~vl~kl~~La~ 281 (970)
T KOG1988|consen 240 NLASRSL-----VAISEQSDVLLQFLKEDERKIVRLKVLRKLDFLAK 281 (970)
T ss_pred HHHHHHH-----HHhHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence 7765221 12235677888888866466777778888777754
No 362
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=73.31 E-value=33 Score=27.07 Aligned_cols=93 Identities=12% Similarity=0.136 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHH-HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH
Q 037562 253 SLQLEATTLFINLLSFDRSPPIDEVI-QSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVK 331 (670)
Q Consensus 253 ~~~~~a~~~L~~l~~~~~~~~~~~~~-~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~ 331 (670)
+++..|+..+..=..+. --....+. ..+.+..|++.+..+. ...+..+...+..++. .+.....+.+.|+.+.|-+
T Consensus 2 EIR~RAL~~I~~Kl~~~-Li~~~dl~~~~~Ll~~LleWFnf~~-~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~k 78 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHG-LISEEDLVKERLLLKQLLEWFNFPP-VPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSK 78 (98)
T ss_pred hHHHHHHHHHHHHHHhc-cccHHHHccHHHHHHHHHHHhCCCC-CccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHH
Confidence 45555655543222221 12222233 4567888888888888 5688899999999988 7888888899999988777
Q ss_pred hhCCCCHHHHHHHHHHH
Q 037562 332 LLASPSVDVRKQTVWAL 348 (670)
Q Consensus 332 lL~~~~~~v~~~a~~~L 348 (670)
+=..-++..+...-..+
T Consensus 79 lr~~~~~~~~~~id~il 95 (98)
T PF14726_consen 79 LRPNVEPNLQAEIDEIL 95 (98)
T ss_pred HHhcCCHHHHHHHHHHH
Confidence 66666666665544443
No 363
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=73.04 E-value=1.2e+02 Score=31.17 Aligned_cols=260 Identities=13% Similarity=0.080 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHhCC---ChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHH
Q 037562 296 PQLQFKAAWALTNIASGTSENTKVVIDHG---AVPIFVKLLAS--PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIP 370 (670)
Q Consensus 296 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~---~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~ 370 (670)
.++..+|+++++.+.. +++....+-+.. ++...+..+.+ .+..+...++++|..=-.. ..+.....+..
T Consensus 60 ~~L~~qALkll~~~l~-~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~-----~~~~~~~~~~~ 133 (372)
T PF12231_consen 60 SRLVIQALKLLGFFLY-HPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFS-----PKIMTSDRVER 133 (372)
T ss_pred hHHHHHHHHHHHHHHc-cHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC-----CcccchhhHHH
Confidence 6888999999999887 554444433221 23444555543 4556777777776652211 11223333444
Q ss_pred HHHHhc---c-cCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccC--C-hHHH
Q 037562 371 LLAELN---E-NANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDG--T-NDKV 443 (670)
Q Consensus 371 Ll~~l~---~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~--~-~~~~ 443 (670)
++..+. + -.+..+....+.++.++....|..-......-+|.++..+-+....++..|..++..+... . ....
T Consensus 134 l~~~l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s 213 (372)
T PF12231_consen 134 LLAALHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELS 213 (372)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHH
Confidence 444432 2 4556777888889999888765443333344667777766677777777766655544311 1 1111
Q ss_pred HH---HHHc----C-----CHHHHHHhcCCCCccch-hHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHH
Q 037562 444 QA---VIEA----G-----VYPRLVELLGHSSSSVL-TPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIK 510 (670)
Q Consensus 444 ~~---~~~~----~-----~i~~L~~lL~~~~~~v~-~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~ 510 (670)
.. ..+. + +.+.+..++.+.+.... ...-.++.-+.. ......--.-...+...-..++++ ++.+|
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~L~~mi~~~~~~~~a~~iW~~~i~LL~-~~~~~~w~~~n~wL~v~e~cFn~~-d~~~k 291 (372)
T PF12231_consen 214 KSVLEDLQRSLENGKLIQLYCERLKEMIKSKDEYKLAMQIWSVVILLLG-SSRLDSWEHLNEWLKVPEKCFNSS-DPQVK 291 (372)
T ss_pred HHHHHHhccccccccHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHhC-CchhhccHhHhHHHHHHHHHhcCC-CHHHH
Confidence 11 1111 2 33345556666333222 222222333332 221000001112344445566777 88999
Q ss_pred HHHHHHHHHhhc---CCHHHHHHHHhcCChHHHHHHhhc-CCh----hHHHHHHHHHHHhcC
Q 037562 511 KEVSWIISNITC---GNREQIQAVIDSGLIGPIVNLLQN-TEF----DTKKEAAWAISNATK 564 (670)
Q Consensus 511 ~~a~~~L~~l~~---~~~~~~~~l~~~~~i~~L~~ll~~-~~~----~v~~~a~~aL~~l~~ 564 (670)
..|..+=..+.. .++......++- +..++...++. ... +++..+...++++..
T Consensus 292 ~~A~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly 352 (372)
T PF12231_consen 292 IQAFKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLY 352 (372)
T ss_pred HHHHHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHH
Confidence 888766555543 222211122211 12233333432 223 667777777777654
No 364
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=72.76 E-value=24 Score=27.84 Aligned_cols=69 Identities=17% Similarity=0.141 Sum_probs=54.8
Q ss_pred hcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHH
Q 037562 533 DSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLE 603 (670)
Q Consensus 533 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~ 603 (670)
...++..|++.+..++...+..+...+..++. .+.....+.+-|+.+.|.++-..-++..+..+-..+.
T Consensus 28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~--~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~ 96 (98)
T PF14726_consen 28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLK--SPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILD 96 (98)
T ss_pred HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHh--CcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 44577888888888888899999999999988 5667788888999999888887777777666555443
No 365
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=72.07 E-value=31 Score=33.72 Aligned_cols=74 Identities=20% Similarity=0.238 Sum_probs=55.8
Q ss_pred ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhc----c--------CCChHHHHHHHHHHH
Q 037562 536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLL----L--------CADPKIVTVCLEGLE 603 (670)
Q Consensus 536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll----~--------~~~~~v~~~a~~~l~ 603 (670)
++|.++.++++.++++|..++.+|..+...........+.+.|..+.+.+.+ . .+...+...+..++.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 6899999999999999999999999999864443333466777766555544 2 455668888888888
Q ss_pred HHHHhh
Q 037562 604 NILKVG 609 (670)
Q Consensus 604 ~l~~~~ 609 (670)
.++...
T Consensus 200 ~L~~~~ 205 (282)
T PF10521_consen 200 SLLKTQ 205 (282)
T ss_pred HHHHhh
Confidence 887653
No 366
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=72.05 E-value=28 Score=29.75 Aligned_cols=72 Identities=11% Similarity=0.075 Sum_probs=57.6
Q ss_pred hHHHHHHhh-cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHH-HHhhccC---CChHHHHHHHHHHHHHHHh
Q 037562 537 IGPIVNLLQ-NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKP-LCDLLLC---ADPKIVTVCLEGLENILKV 608 (670)
Q Consensus 537 i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~-L~~ll~~---~~~~v~~~a~~~l~~l~~~ 608 (670)
+..+..-+. +.++.++..|+..|-.+..++.......+...+.+.. |++++.. .+..|+..++..+..+...
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~ 116 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADA 116 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHH
Confidence 444555555 4588999999999999999988888888898899987 9999863 3458999999998887654
No 367
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=71.20 E-value=11 Score=30.09 Aligned_cols=80 Identities=20% Similarity=0.211 Sum_probs=51.1
Q ss_pred hhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCH
Q 037562 204 TIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVV 283 (670)
Q Consensus 204 ~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l 283 (670)
.++++++.--+.+....+.|..+...| .+++. | .--.-.+++.+..++.. ++....+++.|++
T Consensus 27 ~lkklvl~fek~i~kN~e~R~K~~ddP----------~KFmd---S--E~dLd~~Ik~l~~La~~--P~LYp~lv~l~~v 89 (108)
T PF08216_consen 27 WLKKLVLSFEKRINKNQEMRIKYPDDP----------EKFMD---S--EVDLDEEIKKLSVLATA--PELYPELVELGAV 89 (108)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhCCCCH----------HHHHH---h--HHHHHHHHHHHHHccCC--hhHHHHHHHcCCH
Confidence 466666655556666666666666664 22222 1 11223445566666554 5667889999999
Q ss_pred HHHHHhhcCCCCHHHHHH
Q 037562 284 PRFVEFLMRQDYPQLQFK 301 (670)
Q Consensus 284 ~~L~~ll~~~~~~~v~~~ 301 (670)
+.|+.+|.+++ .+|...
T Consensus 90 ~sL~~LL~HeN-~DIai~ 106 (108)
T PF08216_consen 90 PSLLGLLSHEN-TDIAID 106 (108)
T ss_pred HHHHHHHCCCC-cceehc
Confidence 99999999988 566543
No 368
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=71.18 E-value=1.2e+02 Score=30.56 Aligned_cols=235 Identities=13% Similarity=0.160 Sum_probs=118.0
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhh
Q 037562 328 IFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVR 407 (670)
Q Consensus 328 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 407 (670)
.+++..+ ....-++-|...+.+...+-|...+. ++.+-+.+. .+.|..++++|..-|-.+|.++ ...
T Consensus 29 ~il~~~k-~~~k~k~lasq~ip~~fk~fp~la~~-----a~da~~d~~-ed~d~~ir~qaik~lp~fc~~d------~~~ 95 (460)
T KOG2213|consen 29 GILKAVK-GTSKEKRLASQFIPRFFKHFPSLADE-----AIDAQLDLC-EDDDVGIRRQAIKGLPLFCKGD------ALS 95 (460)
T ss_pred HHHHHhh-cchHHHHHHHHHHHHHHhhCchhhhH-----HHHhhhccc-cccchhhHHHHHhccchhccCc------hhh
Confidence 3444443 33445567778888888777765443 455666666 7778899999999998888873 123
Q ss_pred hhHHHHHHhhc------------cCChhHHHHHHHHHHH-hccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHH
Q 037562 408 PALPVLAQLIR------------SNDEEVLTDACWALSY-LSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTI 474 (670)
Q Consensus 408 ~~i~~L~~lL~------------~~~~~v~~~al~~L~~-l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L 474 (670)
.+.+.++++|. ..|..+++.++.-|+. +..-.++....-++..++..+...|.+-..+--......|
T Consensus 96 rv~d~l~qLLnk~sl~~Lf~~~~~~D~~irek~l~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L 175 (460)
T KOG2213|consen 96 RVNDVLVQLLNKASLTGLFGQIEVGDEQIREKVLKFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDIL 175 (460)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33444444443 2366677666665543 2222233333334444555555556554433333444555
Q ss_pred HHhhcCC----chhhHHHHhCCChHHHHHh--hccCCchhHHHHHH----HHHHHhhcCC--HHHHHHHHhcCChHHHHH
Q 037562 475 RNIVKGD----DFQTQCIINCGALPYFLDM--LVHNHEESIKKEVS----WIISNITCGN--REQIQAVIDSGLIGPIVN 542 (670)
Q Consensus 475 ~~l~~~~----~~~~~~l~~~~~~~~L~~~--l~~~~~~~v~~~a~----~~L~~l~~~~--~~~~~~l~~~~~i~~L~~ 542 (670)
+++.... ....+.+++. .+-+.++ +.-. |+++...-. .++--++.+. .....+ +...++|.
T Consensus 176 ~~lk~~~~k~~~a~lqeLa~~--~e~~a~ldaf~~s-D~d~VdRfisCl~~AvPfFargapSskf~~y-~n~~~ip~--- 248 (460)
T KOG2213|consen 176 ASLKSLQTKAGEARLQELAEE--QEGLADLDAFNVS-DADYVDRFISCLLMAVPFFARGAPSSKFVEY-LNKHIIPH--- 248 (460)
T ss_pred HhhhcccCCCCHHHHHHHHHH--HhhhhccCcccCC-ChHHHHHHHHHHHHhhhhhhcCCchhHHHHH-HHhhhccc---
Confidence 5554322 1111112110 1111111 2222 333333222 2233333332 222222 23345554
Q ss_pred HhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhc
Q 037562 543 LLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLL 587 (670)
Q Consensus 543 ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll 587 (670)
-..-...+.+...+.+|+.|+.....+.... .++.++++|
T Consensus 249 ~fdkl~e~rkL~lLK~lAEMss~ttaq~a~q-----~Lpsi~elL 288 (460)
T KOG2213|consen 249 HFDKLTEERKLDLLKALAEMSSYTTAQAARQ-----MLPSIVELL 288 (460)
T ss_pred ccccchHHHHHHHHHHHHHhCccchHHHHHH-----HHHHHHHHH
Confidence 1111235788889999999988754444444 355555555
No 369
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=71.12 E-value=1e+02 Score=29.68 Aligned_cols=215 Identities=17% Similarity=0.096 Sum_probs=117.4
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHhcCCCC---CcHHHHHH------c-CCHH----HHHHhhcCCCCHHHHHHHHHHHH
Q 037562 242 AMVDGVWSDDNSLQLEATTLFINLLSFDRS---PPIDEVIQ------S-GVVP----RFVEFLMRQDYPQLQFKAAWALT 307 (670)
Q Consensus 242 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~------~-g~l~----~L~~ll~~~~~~~v~~~a~~~L~ 307 (670)
.-+..|.+.++..-..|+..+.++...-+- +..+.+.+ . |..+ .+++-+.++ ...+.+...+.
T Consensus 11 ~~vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss---~t~e~tl~lL~ 87 (262)
T PF14225_consen 11 TAVACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSS---STYELTLRLLS 87 (262)
T ss_pred HHHHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCC---CcHHHHHHHHH
Confidence 345556666666666677766666544211 11111111 1 2333 333434443 34566667777
Q ss_pred HHcCC-------ChhhHHHHHhCCChHHHHHhhCCCC----HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc
Q 037562 308 NIASG-------TSENTKVVIDHGAVPIFVKLLASPS----VDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELN 376 (670)
Q Consensus 308 ~l~~~-------~~~~~~~i~~~~~i~~L~~lL~~~~----~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~ 376 (670)
.++.. +.+.|-.+.-.+.+|.++.-+.+++ ......++..|+.+|.... ...+..++....
T Consensus 88 ~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya 159 (262)
T PF14225_consen 88 RLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYA 159 (262)
T ss_pred HHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHH
Confidence 76652 1222333333346677777777766 2344466778888873321 112333443332
Q ss_pred ccC---ChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHH
Q 037562 377 ENA---NLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYP 453 (670)
Q Consensus 377 ~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~ 453 (670)
+.. ..+..+.++..+..-.. |. .....+..++.++..+-+.++..++.+|..+....+-... ...+++.
T Consensus 160 ~~~fr~~~dfl~~v~~~l~~~f~--P~----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlis 231 (262)
T PF14225_consen 160 KGRFRDKDDFLSQVVSYLREAFF--PD----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLIS 231 (262)
T ss_pred hcCCCCHHHHHHHHHHHHHHHhC--ch----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHH
Confidence 222 23444445544443221 11 1245667788899888899999999999998866443322 4446888
Q ss_pred HHHHhcCCCCccchhHHHHHHHHhh
Q 037562 454 RLVELLGHSSSSVLTPALRTIRNIV 478 (670)
Q Consensus 454 ~L~~lL~~~~~~v~~~a~~~L~~l~ 478 (670)
.+.++++++- -.+|+.++-+..
T Consensus 232 pllrlL~t~~---~~eAL~VLd~~v 253 (262)
T PF14225_consen 232 PLLRLLQTDL---WMEALEVLDEIV 253 (262)
T ss_pred HHHHHhCCcc---HHHHHHHHHHHH
Confidence 8888887764 455666665443
No 370
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=70.25 E-value=1.9e+02 Score=32.58 Aligned_cols=165 Identities=12% Similarity=0.098 Sum_probs=93.8
Q ss_pred hHHHHhCCChHHHHHhhccCC-------chhHHHHHHHHHHHhhcCCHHHHHHHHh--------cCChHHHHHHhh----
Q 037562 485 TQCIINCGALPYFLDMLVHNH-------EESIKKEVSWIISNITCGNREQIQAVID--------SGLIGPIVNLLQ---- 545 (670)
Q Consensus 485 ~~~l~~~~~~~~L~~~l~~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~l~~--------~~~i~~L~~ll~---- 545 (670)
...+.+.+++..++++..-.. ..+....|..+|.-+..- |+....+.. ..++..+++...
T Consensus 594 aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~ 672 (1516)
T KOG1832|consen 594 AENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANGSNS 672 (1516)
T ss_pred HHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeeccccccc
Confidence 444667778888888875432 234445566655555432 333333332 113444444333
Q ss_pred cCChhHHHHHHHHHHHhcCCC---------------------------C---HHHH----HHHHHcCCcHHHHhhccCCC
Q 037562 546 NTEFDTKKEAAWAISNATKFG---------------------------T---HEQI----KHLVREGCVKPLCDLLLCAD 591 (670)
Q Consensus 546 ~~~~~v~~~a~~aL~~l~~~~---------------------------~---~~~~----~~l~~~~~i~~L~~ll~~~~ 591 (670)
..|++++..|+.+|.|+.... + .... ..+..+++|..|+.++.-..
T Consensus 673 i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~ 752 (1516)
T KOG1832|consen 673 IVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKN 752 (1516)
T ss_pred ccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccC
Confidence 237899999999999986632 0 0111 22334789999999997665
Q ss_pred h-----HHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHH--HHHhh--------cCCCHHHHHHHHHH
Q 037562 592 P-----KIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEK--IENLQ--------SHDDNGISEKAVEI 656 (670)
Q Consensus 592 ~-----~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--l~~L~--------~~~~~~v~~~a~~~ 656 (670)
| .+|..|+++|.-+.+..+. ++++...-.+.. ++.|+ .+.+...-++|..+
T Consensus 753 P~t~aD~IRalAc~~L~GLaR~~tV--------------rQIltKLpLvt~~~~q~lm~ePV~~Dkr~~H~~fck~A~~L 818 (1516)
T KOG1832|consen 753 PPTTADCIRALACRVLLGLARDDTV--------------RQILTKLPLVTNERAQILMAEPVTYDKRHEHLQFCKLASAL 818 (1516)
T ss_pred CCCcHHHHHHHHHHHHhccccCcHH--------------HHHHHhCccccchHHHHHhhCcccccchhHHHHHHHHHHHH
Confidence 5 5888888888877765443 333333222221 33332 22333445677888
Q ss_pred HHHhcCCc
Q 037562 657 LETYWSSR 664 (670)
Q Consensus 657 l~~~~~~~ 664 (670)
|++.+...
T Consensus 819 l~~~~g~~ 826 (1516)
T KOG1832|consen 819 LKEAQGTP 826 (1516)
T ss_pred HHHHhCCc
Confidence 88776553
No 371
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=70.13 E-value=92 Score=35.35 Aligned_cols=141 Identities=18% Similarity=0.177 Sum_probs=84.3
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHH-
Q 037562 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVI- 321 (670)
Q Consensus 243 l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~- 321 (670)
+...+..++.......+.++..+..-....... ...-++.-..-.+..- ..+......+|.+++.-+++..+.+.
T Consensus 446 l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~-~~~~~~~~~il~rls~~~~~~L~~l~~ 521 (727)
T PF12726_consen 446 LLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSL-GQITDLISQILERLSDFDPSHLKELLS 521 (727)
T ss_pred HHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHH-HHHHHHHHHHHHHHhcCCHHHHHHHHc
Confidence 344444566666666666666664432111111 1111222222222222 46777888999999997777777766
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC
Q 037562 322 DHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK 398 (670)
Q Consensus 322 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~ 398 (670)
+.+....++.++-+++.++.+.|...|........ | .+.+-.++ +..-........+++..+....
T Consensus 522 d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~--R--------~e~i~~ll-~~~~~~tL~ai~~~l~~~~~~~ 587 (727)
T PF12726_consen 522 DPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDG--R--------LEAIQALL-QSNFSPTLSAINWSLRQLTKLK 587 (727)
T ss_pred CcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCc--H--------HHHHHHHH-HHhHHHHHHHHHHHHHHHHhhh
Confidence 46888999999999999999999999999874322 2 22223333 2112244455666666666543
No 372
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=69.68 E-value=8.3 Score=37.39 Aligned_cols=136 Identities=10% Similarity=-0.010 Sum_probs=75.2
Q ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHHcC--CHHHHHHhcCCC---CccchhHHHHHHHHhhcCCchhh-HHHHhCCC
Q 037562 420 NDEEVLTDACWALSYLSDGTNDKVQAVIEAG--VYPRLVELLGHS---SSSVLTPALRTIRNIVKGDDFQT-QCIINCGA 493 (670)
Q Consensus 420 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~--~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~-~~l~~~~~ 493 (670)
..+..+.-++++++|+-.+.......+-..+ ++..+.....+. +..++..++..+.|++....... ..-.....
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 4577888899999999877655433222222 223333333332 67789999999999975221111 00011123
Q ss_pred hHHHHHh-hccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh-cCChhHHHHH
Q 037562 494 LPYFLDM-LVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ-NTEFDTKKEA 555 (670)
Q Consensus 494 ~~~L~~~-l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a 555 (670)
+..+.+. .....+++....+..+++++....+.........++-..+...-. ..++.++..+
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~ 265 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVA 265 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHh
Confidence 5556663 333238899999999999998765544433322333333333332 3345555443
No 373
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=68.77 E-value=59 Score=29.07 Aligned_cols=74 Identities=14% Similarity=0.081 Sum_probs=49.2
Q ss_pred hHHHHHHhcccCChhHHHHHHHHHHhhhcC-CCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHH
Q 037562 368 LIPLLAELNENANLSMLRTATWTLFNFCRG-KPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDK 442 (670)
Q Consensus 368 i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~ 442 (670)
++.++.-+ ...+...+-.|...+..+... ...........++..+-..|.+.|+++...++.+|..++...+..
T Consensus 40 Lpif~dGL-~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~v 114 (183)
T PF10274_consen 40 LPIFFDGL-RETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMV 114 (183)
T ss_pred HHHHHhhh-hccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 45555555 334445555556666666555 344444455677777888889999999999999999996554433
No 374
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=68.34 E-value=1.2 Score=42.17 Aligned_cols=126 Identities=17% Similarity=0.174 Sum_probs=74.6
Q ss_pred CCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceecccccccccccc
Q 037562 46 MNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEV 125 (670)
Q Consensus 46 ~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~ 125 (670)
...|++|++++- .++.+..+..-.|.++.|.++.- ++..+ ..+..|++|..|++++-. +.++.+ ..
T Consensus 283 Wq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N-~i~~v---~nLa~L~~L~~LDLS~N~-Ls~~~G--------wh 348 (490)
T KOG1259|consen 283 WQELTELDLSGN-LITQIDESVKLAPKLRRLILSQN-RIRTV---QNLAELPQLQLLDLSGNL-LAECVG--------WH 348 (490)
T ss_pred Hhhhhhcccccc-chhhhhhhhhhccceeEEecccc-ceeee---hhhhhcccceEeecccch-hHhhhh--------hH
Confidence 357888888764 35566677777899999999875 34444 457889999999997632 222211 11
Q ss_pred ccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccc--cCCcCCCCccceeeeecc
Q 037562 126 ITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFS--GGELSTPNLHKVQLSRWD 190 (670)
Q Consensus 126 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p--~~~~~~~~L~~l~i~~~~ 190 (670)
..+-+.++|.+.+ ..++++.. ...+=+|..|+.++- +++.+. .++.++|.|+.+.+.+.+
T Consensus 349 ~KLGNIKtL~La~-N~iE~LSG---L~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQ-NKIETLSG---LRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred hhhcCEeeeehhh-hhHhhhhh---hHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence 2355566665543 11112111 112345677777652 334333 356678889888775544
No 375
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=68.16 E-value=98 Score=31.34 Aligned_cols=153 Identities=16% Similarity=0.089 Sum_probs=85.0
Q ss_pred HHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhc----------cCChhHHHHHHHHHHHhccCC
Q 037562 370 PLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIR----------SNDEEVLTDACWALSYLSDGT 439 (670)
Q Consensus 370 ~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~----------~~~~~v~~~al~~L~~l~~~~ 439 (670)
.++..+.+......+...+.++.-|+++...-........++.|+.+-+ ..|..+...++.||+|+..++
T Consensus 49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S 128 (532)
T KOG4464|consen 49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS 128 (532)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence 3444443333334444555556666655433333333344444444332 234578999999999999888
Q ss_pred hHHHHHHHHcCCHHHHHHhcCCC----C-ccchhHHHHHHHHhhcCC-chhhHHHHhCCChHHHHHhhccCC--------
Q 037562 440 NDKVQAVIEAGVYPRLVELLGHS----S-SSVLTPALRTIRNIVKGD-DFQTQCIINCGALPYFLDMLVHNH-------- 505 (670)
Q Consensus 440 ~~~~~~~~~~~~i~~L~~lL~~~----~-~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~~~~L~~~l~~~~-------- 505 (670)
+......++......+...+... - ..+...-++.|.-+..-. +...+.+.+.++++.+-+++.+.-
T Consensus 129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~ 208 (532)
T KOG4464|consen 129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINV 208 (532)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCC
Confidence 87777677766665555554321 1 123333444444443323 334555668889999988886421
Q ss_pred ------chhHHHHHHHHHHHhhc
Q 037562 506 ------EESIKKEVSWIISNITC 522 (670)
Q Consensus 506 ------~~~v~~~a~~~L~~l~~ 522 (670)
+.....+|..++.|++.
T Consensus 209 ~~l~pqe~n~a~EaLK~~FNvt~ 231 (532)
T KOG4464|consen 209 PPLNPQETNRACEALKVFFNVTC 231 (532)
T ss_pred CCCCHHHHHHHHHHHHHHhheee
Confidence 11334456666677655
No 376
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=67.93 E-value=68 Score=40.88 Aligned_cols=269 Identities=14% Similarity=0.150 Sum_probs=133.4
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH---HHH--hCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 037562 287 VEFLMRQDYPQLQFKAAWALTNIASGTSENTK---VVI--DHGAVPIFVKL-LASPSVDVRKQTVWALGNVAGDSPRCRD 360 (670)
Q Consensus 287 ~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~---~i~--~~~~i~~L~~l-L~~~~~~v~~~a~~~L~~l~~~~~~~~~ 360 (670)
...+...+ ++++..++..+..+........+ ... ....+..+..+ +.++++.++......+. ...-.
T Consensus 487 ~~~~~~~~-~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~------~~~~~ 559 (2341)
T KOG0891|consen 487 DSYLEADD-SEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN------ERFDA 559 (2341)
T ss_pred HHHHhccc-HHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc------cchhh
Confidence 34455556 78888887766666552222000 000 11222333332 23355665554444333 11111
Q ss_pred HHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhh-hhhHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 037562 361 LVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQV-RPALPVLAQLIRSNDEEVLTDACWALSYLSDGT 439 (670)
Q Consensus 361 ~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~ 439 (670)
...+.+.+..++..+ .+..-.++..+...+.+++..+|....... ...+..+..+..+.-..+......-+..+....
T Consensus 560 ~laQ~~~lr~~~~al-~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~ 638 (2341)
T KOG0891|consen 560 QLAQPDLLRLLFIAL-HDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISS 638 (2341)
T ss_pred hhcCchhHHHHHHHh-hhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHH
Confidence 122222233344444 444556677777778888876651111111 111111111111222222222222222222222
Q ss_pred hHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHH
Q 037562 440 NDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISN 519 (670)
Q Consensus 440 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~ 519 (670)
...+...++ ..+..++..+.+.+..+...+..+++.|+...........+ ..++.+.+.+....+..-+..+.+++++
T Consensus 639 ~~~i~~~v~-~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~ 716 (2341)
T KOG0891|consen 639 PVLISPYVG-PILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQ 716 (2341)
T ss_pred HHHHHhhcC-chHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhh
Confidence 222222222 45577778888888889999999999999866543433344 5666677777655466778889999999
Q ss_pred hhcCCHHHHHHHH-hcCChHHHHHHhhcC-ChhHHHHHHHHHHHhcCC
Q 037562 520 ITCGNREQIQAVI-DSGLIGPIVNLLQNT-EFDTKKEAAWAISNATKF 565 (670)
Q Consensus 520 l~~~~~~~~~~l~-~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~ 565 (670)
+.+.......... ..-++..++..+..+ ...++..+...++++...
T Consensus 717 l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~ 764 (2341)
T KOG0891|consen 717 LESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL 764 (2341)
T ss_pred hhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence 9763221111111 122455555555533 456777777777766553
No 377
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=66.77 E-value=14 Score=30.73 Aligned_cols=75 Identities=19% Similarity=0.142 Sum_probs=36.7
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCC-ccccccceeeecccccccccccchhhhcccccce
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSS-TSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY 101 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~-~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~ 101 (670)
+|+.+.+.+ +++.+.......+++|+.+.+.+ .+..++... ...++|+.+.+.. +++.+. .....+. +|+.
T Consensus 36 ~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~-~~~f~~~-~l~~ 107 (129)
T PF13306_consen 36 SLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIPS--NITEIG-SSSFSNC-NLKE 107 (129)
T ss_dssp T-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEETT--T-BEEH-TTTTTT--T--E
T ss_pred ccccccccc--cccccceeeeecccccccccccc--cccccccccccccccccccccCc--cccEEc-hhhhcCC-CceE
Confidence 788887765 36666654445677889988855 455555443 2367888888743 344431 1223333 5555
Q ss_pred eccc
Q 037562 102 MEIE 105 (670)
Q Consensus 102 L~i~ 105 (670)
+.+.
T Consensus 108 i~~~ 111 (129)
T PF13306_consen 108 INIP 111 (129)
T ss_dssp EE-T
T ss_pred EEEC
Confidence 5543
No 378
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=66.08 E-value=7 Score=33.43 Aligned_cols=74 Identities=19% Similarity=0.110 Sum_probs=56.7
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHH---HHHHHHHHHHHHcC
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQ---LQFKAAWALTNIAS 311 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~---v~~~a~~~L~~l~~ 311 (670)
+++..|.+.+++.++.++..|+..|-.+..+.......++....++..|..++.+..... |+..+...+...+.
T Consensus 42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 557888899999999999999999988877643444556666778888999887654333 88888888777665
No 379
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=65.38 E-value=2.1e+02 Score=31.15 Aligned_cols=163 Identities=18% Similarity=0.161 Sum_probs=84.2
Q ss_pred hhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHH---hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhc
Q 037562 289 FLMRQDYPQLQFKAAWALTNIASGTSENTKVVI---DHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQ 365 (670)
Q Consensus 289 ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~---~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~ 365 (670)
.+..-. .+.+.-|..+|.-+..+...+-..+- .+..+..++..+. .++..+-.++++|.|+..+ +..++.+...
T Consensus 552 ~l~~wp-~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~ 628 (745)
T KOG0301|consen 552 ILLQWP-VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSR 628 (745)
T ss_pred HHhcCC-HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHH
Confidence 333334 57788888888877764333222222 2334555555554 5577778899999999877 5556555432
Q ss_pred CChHHHHHHh---cccCChhHHHHHHHHHHhhhcCC--CCCChhhhhhhHHHHHHhhc----c-CChhHHHHHHHHHHHh
Q 037562 366 GALIPLLAEL---NENANLSMLRTATWTLFNFCRGK--PQPPFNQVRPALPVLAQLIR----S-NDEEVLTDACWALSYL 435 (670)
Q Consensus 366 ~~i~~Ll~~l---~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~i~~L~~lL~----~-~~~~v~~~al~~L~~l 435 (670)
...++..+ ....+..++...+....|++-.- .... .+..+.+..++. . +|-+.....+.+++++
T Consensus 629 --~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL 702 (745)
T KOG0301|consen 629 --LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTL 702 (745)
T ss_pred --HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhh
Confidence 23333222 12233455543333333333211 1111 233333333332 1 2344566678888888
Q ss_pred ccCChHHHHHHHHcCCHHHHHHhcCC
Q 037562 436 SDGTNDKVQAVIEAGVYPRLVELLGH 461 (670)
Q Consensus 436 ~~~~~~~~~~~~~~~~i~~L~~lL~~ 461 (670)
+..+....+ +...--+..++.-+++
T Consensus 703 ~t~~~~~~~-~A~~~~v~sia~~~~~ 727 (745)
T KOG0301|consen 703 MTVDASVIQ-LAKNRSVDSIAKKLKE 727 (745)
T ss_pred ccccHHHHH-HHHhcCHHHHHHHHHH
Confidence 876554433 4444445666665554
No 380
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=65.33 E-value=77 Score=31.08 Aligned_cols=79 Identities=15% Similarity=0.246 Sum_probs=61.8
Q ss_pred hcCChHHHHHHhhc--CChhHHHHHHHHHHHhcCCCCH-HHHHHHHHcCCcHHHHhhccCC---ChHHHHHHHHHHHHHH
Q 037562 533 DSGLIGPIVNLLQN--TEFDTKKEAAWAISNATKFGTH-EQIKHLVREGCVKPLCDLLLCA---DPKIVTVCLEGLENIL 606 (670)
Q Consensus 533 ~~~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~-~~~~~l~~~~~i~~L~~ll~~~---~~~v~~~a~~~l~~l~ 606 (670)
+.|.+..+++.+.. .+...+..-+.|+..+...+++ ....++.+.|.++.++..+-++ +..+.......|+.++
T Consensus 93 ~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELi 172 (303)
T PF12463_consen 93 KKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELI 172 (303)
T ss_pred cccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 35678888887773 3567888999999999988776 5666788999999999977433 3468899999999998
Q ss_pred Hhhhh
Q 037562 607 KVGVA 611 (670)
Q Consensus 607 ~~~~~ 611 (670)
+....
T Consensus 173 K~n~~ 177 (303)
T PF12463_consen 173 KFNRD 177 (303)
T ss_pred CCCHH
Confidence 76543
No 381
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=65.28 E-value=50 Score=34.63 Aligned_cols=80 Identities=19% Similarity=0.272 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHh
Q 037562 253 SLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKL 332 (670)
Q Consensus 253 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~l 332 (670)
..+..|+.+|+.+++.-..+....+.+. .|+..|++.. .--|..|+.++...+...........-....+.|...
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~~~~~----~L~~~L~S~s-a~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~ 176 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQEIFQP----LLLPYLNSPS-ATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEI 176 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHH----HHHHHhcchh-HHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHH
Confidence 5688899999998877433333333222 6888999888 6778888888888887332211110011234566666
Q ss_pred hCCCC
Q 037562 333 LASPS 337 (670)
Q Consensus 333 L~~~~ 337 (670)
|.++.
T Consensus 177 L~~~~ 181 (441)
T PF12054_consen 177 LENPE 181 (441)
T ss_pred HcCCC
Confidence 76433
No 382
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=64.76 E-value=1.1e+02 Score=33.16 Aligned_cols=163 Identities=9% Similarity=0.069 Sum_probs=83.1
Q ss_pred hccCChhHHHHHHHHHHHhccCChHHHHHHH---HcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhC--
Q 037562 417 IRSNDEEVLTDACWALSYLSDGTNDKVQAVI---EAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINC-- 491 (670)
Q Consensus 417 L~~~~~~v~~~al~~L~~l~~~~~~~~~~~~---~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-- 491 (670)
+..-..+.+..|+.+++-++.+......... ...++..++..+. .++..+..++++|.|+..+ +...+.+...
T Consensus 553 l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~~~s~~~ 630 (745)
T KOG0301|consen 553 LLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGRELFMSRLE 630 (745)
T ss_pred HhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHHHHHHHH
Confidence 3334566777788888777766543332222 1234455555555 5566788899999999886 4434433321
Q ss_pred CChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh-----cCChhHHHHHHHHHHHhcCCC
Q 037562 492 GALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ-----NTEFDTKKEAAWAISNATKFG 566 (670)
Q Consensus 492 ~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-----~~~~~v~~~a~~aL~~l~~~~ 566 (670)
.....+.+.-... +..++...+....|.+.. ..+.-.+.+..+.+...+. .++.+....+..||++++..
T Consensus 631 ~i~~~~~~~~s~~-~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~- 705 (745)
T KOG0301|consen 631 SILDPVIEASSLS-NKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV- 705 (745)
T ss_pred HHhhhhhhhhccc-chhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc-
Confidence 1112222222222 455665544444444321 0000011344444444443 22445566777888888874
Q ss_pred CHHHHHHHHHcCCcHHHHhhc
Q 037562 567 THEQIKHLVREGCVKPLCDLL 587 (670)
Q Consensus 567 ~~~~~~~l~~~~~i~~L~~ll 587 (670)
+.....+.+.-.+..+..-+
T Consensus 706 -~~~~~~~A~~~~v~sia~~~ 725 (745)
T KOG0301|consen 706 -DASVIQLAKNRSVDSIAKKL 725 (745)
T ss_pred -cHHHHHHHHhcCHHHHHHHH
Confidence 33445555544455555444
No 383
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.57 E-value=3.6e+02 Score=33.59 Aligned_cols=132 Identities=15% Similarity=0.122 Sum_probs=79.9
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC-CCCChh
Q 037562 326 VPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK-PQPPFN 404 (670)
Q Consensus 326 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~ 404 (670)
+..++..+..+++..+-.+..+++.++...+.. ..+ .+.....+..+....|+-.|..-..++..+-++. ......
T Consensus 878 ~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~-~f~--a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~q 954 (2067)
T KOG1822|consen 878 LTLIVNSLINPNPKLRCAAAEALARLAQVVGSA-PFV--ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQ 954 (2067)
T ss_pred HHHHhhhhccCChHHHHHHHHHHHHHHHhcccc-chH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCch
Confidence 445566667788888888888898888543321 111 1235566677755666655555555555555544 233344
Q ss_pred hhhhhHHHHHHhhccC-ChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC
Q 037562 405 QVRPALPVLAQLIRSN-DEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH 461 (670)
Q Consensus 405 ~~~~~i~~L~~lL~~~-~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~ 461 (670)
.....+..+..+-+++ ++.|+..++.++..++..........++ ..+..+..++-+
T Consensus 955 hl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve-~tlsl~~~lLls 1011 (2067)
T KOG1822|consen 955 HLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVE-PTLSLCLKLLLS 1011 (2067)
T ss_pred hcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHH-HHHHHHHHHcCC
Confidence 4456677777777655 5699999999999988665544443443 333444444443
No 384
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=64.00 E-value=1.1e+02 Score=27.43 Aligned_cols=74 Identities=7% Similarity=0.002 Sum_probs=54.8
Q ss_pred CCHHHHHHhcCCCCccchhHHHHHHHHhhcC-CchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCH
Q 037562 450 GVYPRLVELLGHSSSSVLTPALRTIRNIVKG-DDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNR 525 (670)
Q Consensus 450 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~ 525 (670)
..++.+..-|...+...+.-|...+..+... ..+..-.+ -..++..+...|++. ++++...+..+|..++..++
T Consensus 38 ~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPv-lPqLI~plk~AL~tr-~~~V~~~~L~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 38 HYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPV-LPQLIIPLKRALNTR-DPEVFCATLKALQQLVTSSD 112 (183)
T ss_pred hHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhhh
Confidence 4677777888888888888888888877765 33322222 235788888889999 99999999999999955433
No 385
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=63.84 E-value=27 Score=28.51 Aligned_cols=70 Identities=10% Similarity=0.015 Sum_probs=53.2
Q ss_pred ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhh-----c-cCCChHHHHHHHHHHHHH
Q 037562 536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDL-----L-LCADPKIVTVCLEGLENI 605 (670)
Q Consensus 536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~l-----l-~~~~~~v~~~a~~~l~~l 605 (670)
++..+..-+.+.++.++..|+..|-.+..++++.+...+........++.. . ...+..|+..+...+..+
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 455666667788999999999999999999998888888877666666542 1 234678888888877654
No 386
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=63.47 E-value=42 Score=35.52 Aligned_cols=84 Identities=18% Similarity=0.249 Sum_probs=59.6
Q ss_pred HHHHHHHhcCChHHHHHHhh-cCChhHHHHHHHHHHHhcCCC------------CHHHHHHHHHcCCcHHHHhhccC-CC
Q 037562 526 EQIQAVIDSGLIGPIVNLLQ-NTEFDTKKEAAWAISNATKFG------------THEQIKHLVREGCVKPLCDLLLC-AD 591 (670)
Q Consensus 526 ~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~------------~~~~~~~l~~~~~i~~L~~ll~~-~~ 591 (670)
....-+.+.++++.|++.|. +.+..++.+|+..|..+.... ..+....+.....+..|++.+-. ..
T Consensus 53 ~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~ 132 (475)
T PF04499_consen 53 GILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQG 132 (475)
T ss_pred HHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCC
Confidence 44455567899999999997 556789999999888875532 23455667777778888875532 33
Q ss_pred hHHHHHHHHHHHHHHHhh
Q 037562 592 PKIVTVCLEGLENILKVG 609 (670)
Q Consensus 592 ~~v~~~a~~~l~~l~~~~ 609 (670)
......++.++..+++..
T Consensus 133 ~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 133 GSSLVNGVSILIELIRKN 150 (475)
T ss_pred cchHHHHHHHHHHHHHhc
Confidence 556667778888887654
No 387
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=62.87 E-value=56 Score=32.97 Aligned_cols=112 Identities=13% Similarity=0.123 Sum_probs=67.9
Q ss_pred hhhHHHHHHhhccC-------ChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC----------CCccchhH
Q 037562 407 RPALPVLAQLIRSN-------DEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH----------SSSSVLTP 469 (670)
Q Consensus 407 ~~~i~~L~~lL~~~-------~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~----------~~~~v~~~ 469 (670)
...+|.++.++... +-......+.++..|..+..-.....+. .+++.++.++-. +.+.+|..
T Consensus 209 ~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh-~Lip~vltclv~~~l~~~~~~~~h~~LRd~ 287 (343)
T cd08050 209 QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLH-QLIPSVLTCLVAKQLCSRPPDDNHWALRDY 287 (343)
T ss_pred hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHH-HHHHHHHHHhhhHhhcCCCCCchHHHHHHH
Confidence 45667777666532 5667777888888888776544444443 477777777632 33578999
Q ss_pred HHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchh-HHHHHHHHHHHh
Q 037562 470 ALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEES-IKKEVSWIISNI 520 (670)
Q Consensus 470 a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~-v~~~a~~~L~~l 520 (670)
|+.+++.++......-. -+...+...+.+.+.++..+. ....|...|..+
T Consensus 288 AA~ll~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~l 338 (343)
T cd08050 288 AARLLAQICRKFSTSYN-TLQPRITRTLLKALLDPKKPLTTHYGAIVGLSAL 338 (343)
T ss_pred HHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHh
Confidence 99999999864332211 122344556666665542332 355666666655
No 388
>PF11229 DUF3028: Protein of unknown function (DUF3028); InterPro: IPR021392 This eukaryotic family of proteins has no known function.
Probab=62.79 E-value=2.1e+02 Score=30.18 Aligned_cols=237 Identities=17% Similarity=0.186 Sum_probs=117.7
Q ss_pred CChHHHHHHhcccCChhHHH-HHHHHHHhhhcCCCCC-----------Ch-hhhhhhHHHHHHhhc-cCChhHHHHHHHH
Q 037562 366 GALIPLLAELNENANLSMLR-TATWTLFNFCRGKPQP-----------PF-NQVRPALPVLAQLIR-SNDEEVLTDACWA 431 (670)
Q Consensus 366 ~~i~~Ll~~l~~~~~~~~~~-~a~~~L~~l~~~~~~~-----------~~-~~~~~~i~~L~~lL~-~~~~~v~~~al~~ 431 (670)
..++.-++.+.....+.+++ .|+.-+..+....... .+ .....++..+.+.+. ++...++.++++.
T Consensus 42 ~ll~~w~ki~laeg~ptm~~laa~~GlvaLvgse~~~iQlkse~~~ss~~q~~lnevir~ltqvis~sg~iglQsn~~wl 121 (589)
T PF11229_consen 42 RLLPAWIKIVLAEGCPTMQRLAALNGLVALVGSEGDLIQLKSEAIQSSQFQSRLNEVIRTLTQVISFSGVIGLQSNAAWL 121 (589)
T ss_pred hHHHHHHHHHHhcCCcHHHHHHHhhchhheeccccceeeehhhcccCHHHHHHHHHHHHHHHHHHcCccccccccchHHH
Confidence 34666666665666666666 4444455554433111 01 122456677777776 4578899999999
Q ss_pred HHHhccC--Ch--------HHHHHHHHcCCHHHHHHhcCC----CCccchhHHHHH-HHHhhcCCchhhHHHHhCCChHH
Q 037562 432 LSYLSDG--TN--------DKVQAVIEAGVYPRLVELLGH----SSSSVLTPALRT-IRNIVKGDDFQTQCIINCGALPY 496 (670)
Q Consensus 432 L~~l~~~--~~--------~~~~~~~~~~~i~~L~~lL~~----~~~~v~~~a~~~-L~~l~~~~~~~~~~l~~~~~~~~ 496 (670)
|+.+--. +. .....+-+..++...+.++-. +.+.+....+.+ +..++...+... .=-.+.-..
T Consensus 122 LGhLhls~~ss~~srtsvP~d~sYLpE~S~iRaai~f~i~~GkkGpe~vpp~lvkvvl~~ia~vgeS~q--yPPVNWaal 199 (589)
T PF11229_consen 122 LGHLHLSTLSSSQSRTSVPTDFSYLPESSFIRAAIDFLIEAGKKGPESVPPSLVKVVLKPIATVGESYQ--YPPVNWAAL 199 (589)
T ss_pred HHHHHHhhcccccCCCCCCCccccCcchhHHHHHHHHHHHccccCCccCCHHHHHHHHHHhhhcCCCCC--CCCccHHHH
Confidence 9876311 11 111223334566666666543 223333332222 233322111100 000122223
Q ss_pred HHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 037562 497 FLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVR 576 (670)
Q Consensus 497 L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~ 576 (670)
|-.++.-+...+++..+......=+. +......++..=+.|.++.-+ +...+..-...+..+..+-.+++.+.|.+
T Consensus 200 LsPLMRlnfGeEvq~lCLeiAvtQaq-SSqsAa~fLg~WlsPpli~sL---s~~tk~~L~~Sl~~wmkhVsedqiQ~Fve 275 (589)
T PF11229_consen 200 LSPLMRLNFGEEVQQLCLEIAVTQAQ-SSQSAAMFLGSWLSPPLIHSL---SVNTKKYLFESLSLWMKHVSEDQIQAFVE 275 (589)
T ss_pred hhHHHhccccHHHHHHHHHHHHHhcc-ccccHHHHHHhhcCcchhhhh---hHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 33344333356677666544333322 233344555555566666544 45666666777777766666677666665
Q ss_pred cCCcHHHHhhccCCChHHHHHHHHHHHHHHHh
Q 037562 577 EGCVKPLCDLLLCADPKIVTVCLEGLENILKV 608 (670)
Q Consensus 577 ~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~ 608 (670)
.-++..+-..-.-.++++...++..+..-++.
T Consensus 276 ~l~vq~F~~~~~~~~~~lC~saLqGLsqAMKl 307 (589)
T PF11229_consen 276 NLMVQQFKAASRPSNPELCQSALQGLSQAMKL 307 (589)
T ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHHHHhcC
Confidence 43333333332335566666666666654443
No 389
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=62.04 E-value=1.5e+02 Score=28.46 Aligned_cols=163 Identities=15% Similarity=0.141 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHhhCCC-------chhHHHHHhcCChHHHHHHhcccC---ChhHHHHHHHHHHhhhcCCCCCChhhhhh
Q 037562 339 DVRKQTVWALGNVAGDS-------PRCRDLVLSQGALIPLLAELNENA---NLSMLRTATWTLFNFCRGKPQPPFNQVRP 408 (670)
Q Consensus 339 ~v~~~a~~~L~~l~~~~-------~~~~~~i~~~~~i~~Ll~~l~~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 408 (670)
...+.++..|..++... ++.|-.+.-.+.+|.++..+.+.. .......++..|+.++......
T Consensus 77 ~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~------- 149 (262)
T PF14225_consen 77 STYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLP------- 149 (262)
T ss_pred CcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCc-------
Confidence 34556777777776422 112222222234666666663333 1234456778888888653222
Q ss_pred hHHHHHHhhc----cCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchh
Q 037562 409 ALPVLAQLIR----SNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQ 484 (670)
Q Consensus 409 ~i~~L~~lL~----~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 484 (670)
.+..+..... .+..+....++..++.-- .++ .+...+..++.+|.++-..++..++.+|..+....+-.
T Consensus 150 ~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f--~P~-----~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~ 222 (262)
T PF14225_consen 150 NLARILSSYAKGRFRDKDDFLSQVVSYLREAF--FPD-----HEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMR 222 (262)
T ss_pred cHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh--Cch-----hHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCC
Confidence 2222222222 223455555555555422 111 12245677889998888889999999999998765443
Q ss_pred hHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhh
Q 037562 485 TQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNIT 521 (670)
Q Consensus 485 ~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~ 521 (670)
.. ...+.+.++..+++.+ .-.+|..++-++.
T Consensus 223 ~~--~~~dlispllrlL~t~----~~~eAL~VLd~~v 253 (262)
T PF14225_consen 223 SP--HGADLISPLLRLLQTD----LWMEALEVLDEIV 253 (262)
T ss_pred CC--cchHHHHHHHHHhCCc----cHHHHHHHHHHHH
Confidence 32 4456788888888766 4456666665553
No 390
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=61.97 E-value=46 Score=38.70 Aligned_cols=231 Identities=15% Similarity=0.139 Sum_probs=116.8
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH-HHHhCCChHHHHHhh---------C-CCCHHHHHHHHHHHHH
Q 037562 282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK-VVIDHGAVPIFVKLL---------A-SPSVDVRKQTVWALGN 350 (670)
Q Consensus 282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~-~i~~~~~i~~L~~lL---------~-~~~~~v~~~a~~~L~~ 350 (670)
++..|+..+-++. .++|.-++.++..+......... ..++. .+-.++..+ . +--..+++.++++|+.
T Consensus 78 ~~e~L~~~~~~~~-we~rhg~~i~lrei~~~h~~~~~~~~led-~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~ 155 (1549)
T KOG0392|consen 78 FLEELVNDLFEPQ-WEIRHGAAIALREILKTHGDSLSYELLED-LLIRLLCVLALDRFGDFISDNVVAPVREACAQALGA 155 (1549)
T ss_pred HHHHHHHHhcCch-hhhhcCcchhhhhHHHHhcchhhHHHHHH-HHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHH
Confidence 4566777777778 48888888888887652211111 11111 111111111 1 1224789999999998
Q ss_pred hhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHH
Q 037562 351 VAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACW 430 (670)
Q Consensus 351 l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~ 430 (670)
+..+-.... +. ..+..+.+++ ..+..+++.-.+..+.+...............+++.....+.+.+..++..|+.
T Consensus 156 ~l~~~~~s~--~~--~~~~il~q~~-~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~~~i~~L~ds~ddv~~~aa~ 230 (1549)
T KOG0392|consen 156 YLKHMDESL--IK--ETLDILLQML-RQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLDFVIEGLEDSDDDVRSVAAQ 230 (1549)
T ss_pred HHHhhhhHh--hH--HHHHHHHHHH-cCcchhheechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHHHH
Confidence 875432211 11 1244555555 333333333222222221111001111223456677778888889999998888
Q ss_pred HHHHhccCChHH-HHHHHHcCCHHHHHHhcCCCCccchhHHH---HHHHHhhcCCch---hhHHHHhCCChHHHHHhhcc
Q 037562 431 ALSYLSDGTNDK-VQAVIEAGVYPRLVELLGHSSSSVLTPAL---RTIRNIVKGDDF---QTQCIINCGALPYFLDMLVH 503 (670)
Q Consensus 431 ~L~~l~~~~~~~-~~~~~~~~~i~~L~~lL~~~~~~v~~~a~---~~L~~l~~~~~~---~~~~l~~~~~~~~L~~~l~~ 503 (670)
.+..++...... .+.+. .++..+...+..-+. +...+. ..+..++..... ..+.-.+.|+++.+...+.+
T Consensus 231 ~l~~~~s~~v~l~~~~i~--~lv~~l~~~l~~ldd-l~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~ 307 (1549)
T KOG0392|consen 231 FLVPAPSIQVKLMVQKIA--KLVHTLWSFLLELDD-LSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRH 307 (1549)
T ss_pred HhhhhhHHHHhhhHhHHH--HHHHHHHHHHHHhhh-cchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHH
Confidence 887766433111 11111 233334444333222 111111 112222222200 01111245889999999988
Q ss_pred CCchhHHHHHHHHHHHhhcC
Q 037562 504 NHEESIKKEVSWIISNITCG 523 (670)
Q Consensus 504 ~~~~~v~~~a~~~L~~l~~~ 523 (670)
. =..++..++..+..+...
T Consensus 308 ~-i~sv~~a~l~~l~~lle~ 326 (1549)
T KOG0392|consen 308 T-ISSVRRAALETLAMLLEA 326 (1549)
T ss_pred H-HHHHHHHHHHHHHHHHhc
Confidence 8 788899999998888763
No 391
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=61.73 E-value=67 Score=37.51 Aligned_cols=236 Identities=18% Similarity=0.220 Sum_probs=124.5
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHH--------HHHHhhcCCCCHHHHHHHHHHHHHH
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVP--------RFVEFLMRQDYPQLQFKAAWALTNI 309 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~--------~L~~ll~~~~~~~v~~~a~~~L~~l 309 (670)
+.+..|++.+-++..++|.-|+-+++.++...........++.-.+. .+-.+..+.-...|+++++++|+.+
T Consensus 77 s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~caq~L~~~ 156 (1549)
T KOG0392|consen 77 SFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREACAQALGAY 156 (1549)
T ss_pred HHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHH
Confidence 44666777777777777777777777776543222222222221111 1112222222257999999999988
Q ss_pred cCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh--cCChHHHHHHhcccCChhHHHHH
Q 037562 310 ASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLS--QGALIPLLAELNENANLSMLRTA 387 (670)
Q Consensus 310 ~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~--~~~i~~Ll~~l~~~~~~~~~~~a 387 (670)
..+-..... ...+..+.+++..+..+++...+..+..... ..++.+.. ..+++..+..+ .+.+.+++..|
T Consensus 157 l~~~~~s~~----~~~~~il~q~~~q~~w~ir~Ggll~iky~~a---ir~d~l~~~~~~vl~~~i~~L-~ds~ddv~~~a 228 (1549)
T KOG0392|consen 157 LKHMDESLI----KETLDILLQMLRQPNWEIRHGGLLGIKYNVA---IRQDLLFQLLNLVLDFVIEGL-EDSDDDVRSVA 228 (1549)
T ss_pred HHhhhhHhh----HHHHHHHHHHHcCcchhheechHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhh-hhcchHHHHHH
Confidence 763222211 1245677777777766666554444433321 01111110 11344555556 66777899988
Q ss_pred HHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCCh--hHHHHHHHHHHHhccCCh--HH-HHHHHHcCCHHHHHHhcCCC
Q 037562 388 TWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDE--EVLTDACWALSYLSDGTN--DK-VQAVIEAGVYPRLVELLGHS 462 (670)
Q Consensus 388 ~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~--~v~~~al~~L~~l~~~~~--~~-~~~~~~~~~i~~L~~lL~~~ 462 (670)
+.++.-.....+......+..++..+...+..-+. .-.......+..++...+ +. .+.-.+.|+++.+...+.+.
T Consensus 229 a~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~n~~~~Lvp~~~p~l~~~ 308 (1549)
T KOG0392|consen 229 AQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQNLEVGLVPRLWPFLRHT 308 (1549)
T ss_pred HHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHhhhhhccchhhHHHHHHH
Confidence 88887776654333334444555555544433222 001111112222222211 00 01112248888888888887
Q ss_pred CccchhHHHHHHHHhhcCC
Q 037562 463 SSSVLTPALRTIRNIVKGD 481 (670)
Q Consensus 463 ~~~v~~~a~~~L~~l~~~~ 481 (670)
=..++..++..+..+....
T Consensus 309 i~sv~~a~l~~l~~lle~~ 327 (1549)
T KOG0392|consen 309 ISSVRRAALETLAMLLEAD 327 (1549)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 7778888888888887544
No 392
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=61.00 E-value=2.2e+02 Score=29.88 Aligned_cols=262 Identities=12% Similarity=0.074 Sum_probs=114.5
Q ss_pred CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC----CCCCChhhhhhhHH
Q 037562 336 PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG----KPQPPFNQVRPALP 411 (670)
Q Consensus 336 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~----~~~~~~~~~~~~i~ 411 (670)
+++.+....++++..+-..-......+.+. .+..+.....+..++..-.+...+++.+.+. ++.........++|
T Consensus 42 ENeylMk~iMRvl~~~~e~~~p~~~~il~~-L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P 120 (435)
T PF03378_consen 42 ENEYLMKCIMRVLSVLQEDILPIAVEILQH-LTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP 120 (435)
T ss_dssp C-HHHHHHHHHHHHHSTTTTGGGHHHHHHH-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence 566666666666666554433333333221 1222222223334555555444444444433 23333345577889
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCcc---chhHHHHHHHHhhcCCchhhHHH
Q 037562 412 VLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSS---VLTPALRTIRNIVKGDDFQTQCI 488 (670)
Q Consensus 412 ~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~---v~~~a~~~L~~l~~~~~~~~~~l 488 (670)
.+...|+.+-.+..-++...++.+.+..+ ...+ ..-+...+-.++...-|+ -.-...+.|..+....+.. +
T Consensus 121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~--~~~~-p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~---i 194 (435)
T PF03378_consen 121 PFQEILQQDVQEFIPYVFQILAQLLELRP--SSPL-PDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSF---I 194 (435)
T ss_dssp HHHHHHHTT-TTTHHHHHHHHHHHHHHSS----S---TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCC-cHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchh---h
Confidence 99999998878888888888888775443 0101 112222333333332222 1233444555554433222 2
Q ss_pred HhCCChH----HHHHhhccCCchhHHHHHHHHHHHhhcCCHH-HHHHHHhcCChHHHHHHhh-cCChhHHHHHHHHHHHh
Q 037562 489 INCGALP----YFLDMLVHNHEESIKKEVSWIISNITCGNRE-QIQAVIDSGLIGPIVNLLQ-NTEFDTKKEAAWAISNA 562 (670)
Q Consensus 489 ~~~~~~~----~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l 562 (670)
...+-+. .+-.++.+. ..+ ..+...|..+...-+. .....+. .++..+..-++ +...+.++.-+..++.+
T Consensus 195 ~~~~~l~~iLgvFQkLi~sk-~~D--~~gF~LL~~iv~~~p~~~l~~yl~-~I~~lll~RLq~skT~kf~~~fv~F~~~~ 270 (435)
T PF03378_consen 195 VANNQLEPILGVFQKLIASK-AND--HYGFDLLESIVENLPPEALEPYLK-QIFTLLLTRLQSSKTEKFVKRFVVFLSLF 270 (435)
T ss_dssp ---S-CHHHHHHHHHHHT-T-TCH--HHHHHHHHHHHHHS-HHHHGGGHH-HHHHHHHHHHHHC--HHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHCCC-Ccc--hHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHhhCCcHHHHHHHHHHHHHH
Confidence 2233333 333455554 211 3455666665543222 2222221 24445555555 44455665555555555
Q ss_pred cCCCCHHHHHHHHH---cCCcHHHHhhc------cCCChHHHHHHHHHHHHHHHh
Q 037562 563 TKFGTHEQIKHLVR---EGCVKPLCDLL------LCADPKIVTVCLEGLENILKV 608 (670)
Q Consensus 563 ~~~~~~~~~~~l~~---~~~i~~L~~ll------~~~~~~v~~~a~~~l~~l~~~ 608 (670)
+...+++..-..++ .|....+..-+ +-..+.-|+.+.-++.+++..
T Consensus 271 ~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~e 325 (435)
T PF03378_consen 271 AIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCE 325 (435)
T ss_dssp HHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHS
T ss_pred HHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhc
Confidence 54334444333333 23333333311 222333455566666666644
No 393
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=59.70 E-value=19 Score=27.71 Aligned_cols=70 Identities=11% Similarity=0.144 Sum_probs=45.7
Q ss_pred hcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHH
Q 037562 364 SQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALS 433 (670)
Q Consensus 364 ~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~ 433 (670)
+...+.|+...+....+.+++...+.++.++.......-...-..++..+-....++++++...|..++.
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~ 84 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ 84 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence 4446788888887778899999999999998876532211112334444444455566777776666553
No 394
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=59.65 E-value=7.4 Score=33.24 Aligned_cols=125 Identities=10% Similarity=0.085 Sum_probs=88.5
Q ss_pred CchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc--CCHHHHHHHHhcCChHHHHHHh-hcCChhHHHHHHH
Q 037562 481 DDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC--GNREQIQAVIDSGLIGPIVNLL-QNTEFDTKKEAAW 557 (670)
Q Consensus 481 ~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~--~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~a~~ 557 (670)
++...+.+++.+.+..+.++++......++......++-+.. .++....++...+.+..++..- .-.++++...-+.
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 344566777889999999999885477888888888877765 3455566667777788777653 3457889999999
Q ss_pred HHHHhcCCCCHHHHHHHHH--cCCcHHHHh---hccCCChHHHHHHHHHHHHH
Q 037562 558 AISNATKFGTHEQIKHLVR--EGCVKPLCD---LLLCADPKIVTVCLEGLENI 605 (670)
Q Consensus 558 aL~~l~~~~~~~~~~~l~~--~~~i~~L~~---ll~~~~~~v~~~a~~~l~~l 605 (670)
.|..++..-+++....+.. .+-.|.+.+ +..++|.-+|.++-..+-++
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 9998887666565555554 345666554 44778888877766655554
No 395
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=59.47 E-value=2.9e+02 Score=30.76 Aligned_cols=98 Identities=14% Similarity=0.126 Sum_probs=66.6
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHh
Q 037562 243 MVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVID 322 (670)
Q Consensus 243 l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 322 (670)
|...-+..=+.++..|+..+..++... +++-. .++..+|.-|.+++ ..+...|...|.++....|..+..+
T Consensus 309 Le~lS~D~L~~vk~raL~ti~~lL~~k-PEqE~-----~LL~~lVNKlGDpq-nKiaskAsylL~~L~~~HPnMK~Vv-- 379 (988)
T KOG2038|consen 309 LEELSKDPLEEVKKRALKTIYDLLTNK-PEQEN-----NLLVLLVNKLGDPQ-NKIASKASYLLEGLLAKHPNMKIVV-- 379 (988)
T ss_pred HHHHccccHHHHHHHHHHHHHHHHhCC-cHHHH-----HHHHHHHHhcCCcc-hhhhhhHHHHHHHHHhhCCcceeeh--
Confidence 333333455789999999999998763 33322 25667788888888 5999999999999988677765443
Q ss_pred CCChHHHHHhhCCCC--HHHHHHHHHHHHHhh
Q 037562 323 HGAVPIFVKLLASPS--VDVRKQTVWALGNVA 352 (670)
Q Consensus 323 ~~~i~~L~~lL~~~~--~~v~~~a~~~L~~l~ 352 (670)
+..+.+++-.++ ..-...|+..|..+.
T Consensus 380 ---i~EIer~~FRpn~~~ra~Yyav~fLnQ~~ 408 (988)
T KOG2038|consen 380 ---IDEIERLAFRPNVSERAHYYAVIFLNQMK 408 (988)
T ss_pred ---HHHHHHHHcccCccccceeehhhhhhhhH
Confidence 445666665544 334456777777665
No 396
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=56.76 E-value=26 Score=29.94 Aligned_cols=101 Identities=13% Similarity=0.077 Sum_probs=54.7
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT 317 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 317 (670)
+....+++.|+.+...-....+..|.+-..-. .+. ..-+..+++..+++-=.... .--+..|+..|+.|..+.
T Consensus 22 ~Qt~~lielLk~~~~~~~~~lldLL~~RV~PG-VD~-AA~VKA~FL~~ia~g~~~~~-~Is~~~Av~LLGtM~GGY---- 94 (154)
T PF11791_consen 22 EQTAELIELLKNPPAGEEAFLLDLLTNRVPPG-VDE-AAYVKAEFLAAIAKGEISSP-LISPAEAVELLGTMLGGY---- 94 (154)
T ss_dssp HHHHHHHHHHHS--TT-HHHHHHHHHHSS--T-T-H-HHHHHHHHHHHHHTTSS-BT-TB-HHHHHHHHTTS-SST----
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHHHhcCCCC-CCh-HHHHHHHHHHHHHcCCccCC-CcCHHHHHHHHhhccCCC----
Confidence 34567888887655443444444444432221 111 22344545555544322222 234677888888887732
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 037562 318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVA 352 (670)
Q Consensus 318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 352 (670)
-+++|+.+|.+.+..+...|+.+|.+-.
T Consensus 95 -------NV~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 95 -------NVQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp -------THHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred -------cHHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 4899999999999999999999999865
No 397
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=56.56 E-value=2.3e+02 Score=28.73 Aligned_cols=54 Identities=17% Similarity=0.066 Sum_probs=40.4
Q ss_pred ccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcC
Q 037562 464 SSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCG 523 (670)
Q Consensus 464 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 523 (670)
..-+.-|...|.++-.+.++... .++..-+++..+. +..+|..|..-|--+|.+
T Consensus 38 ~k~k~lasq~ip~~fk~fp~la~-----~a~da~~d~~ed~-d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 38 SKEKRLASQFIPRFFKHFPSLAD-----EAIDAQLDLCEDD-DVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred hHHHHHHHHHHHHHHhhCchhhh-----HHHHhhhcccccc-chhhHHHHHhccchhccC
Confidence 34566777888888777666554 3455667778888 889999999999888875
No 398
>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.
Probab=56.28 E-value=1.4e+02 Score=31.29 Aligned_cols=300 Identities=13% Similarity=0.118 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHhhCCCchh-HHHHHhcCChH-HHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhh-hhhhHHHHHH
Q 037562 339 DVRKQTVWALGNVAGDSPRC-RDLVLSQGALI-PLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQ-VRPALPVLAQ 415 (670)
Q Consensus 339 ~v~~~a~~~L~~l~~~~~~~-~~~i~~~~~i~-~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~i~~L~~ 415 (670)
..|..|+.+|+.++..-+.. ... ... .|+..| ++....-+..++.++...+.......... .....+.|..
T Consensus 102 r~Ri~aA~ALG~l~~~~~~~~~~~-----~~~~~L~~~L-~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~ 175 (441)
T PF12054_consen 102 RARIAAAKALGLLLSYWPESSLQE-----IFQPLLLPYL-NSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLE 175 (441)
T ss_pred HHHHHHHHHHHHHHHhcccchHHH-----HHHHHHHHHh-cchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHH
Confidence 45668889999988543221 111 233 466666 55554455577777777776652221111 3455667777
Q ss_pred hhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHH-----HHHHhcCC---CCcc--chhHHHHHHHHh----hcCC
Q 037562 416 LIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYP-----RLVELLGH---SSSS--VLTPALRTIRNI----VKGD 481 (670)
Q Consensus 416 lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~-----~L~~lL~~---~~~~--v~~~a~~~L~~l----~~~~ 481 (670)
.|..+.+..-......+..+-.........+.+.|.++ .|-...+. ..+. -...|-.+.+.. ...-
T Consensus 176 ~L~~~~~~~Y~El~~~l~~lr~ec~~Ll~~f~~~g~~~~~klp~l~~~v~~~~~~~p~~fsi~~A~~v~~~~~~~l~~~l 255 (441)
T PF12054_consen 176 ILENPEPPYYDELVPSLKRLRTECQQLLATFRDVGKVPPSKLPSLPVVVQGEPEAGPEAFSIEQAEKVVGEDFEKLKKSL 255 (441)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhccccccccccccccCCccCCHHHHHHHHHHHHHHHHHhc
Confidence 77744332222233333333333333444455555522 22211121 1111 112222222211 1100
Q ss_pred c---hh--hHHHHh--CC---ChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh-cCChh
Q 037562 482 D---FQ--TQCIIN--CG---ALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ-NTEFD 550 (670)
Q Consensus 482 ~---~~--~~~l~~--~~---~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~ 550 (670)
. .. .+.+-+ .. .+...-..-..- +..|+..++.++..+-.- |+. -+-+|..|++-++ .++..
T Consensus 256 ~~~~k~~a~~~Le~~r~~l~~ai~~~~~~~~~~-~~~V~Aa~A~A~v~l~~l-P~K-----LnPiIrpLMdSIK~Een~~ 328 (441)
T PF12054_consen 256 SPSQKLSALQALEDRRQRLQAAIEEAKEVQTSR-DVRVLAAAASALVALGGL-PKK-----LNPIIRPLMDSIKREENEL 328 (441)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccC-CCC-----ccHHHHHHHHHhhccccHH
Confidence 0 00 000000 00 011111111111 344555555555555321 221 1236778888887 55789
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhc---cCCChHHH--HHHHHHHHHHHHhhhhhhccCCCCCCccHH
Q 037562 551 TKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLL---LCADPKIV--TVCLEGLENILKVGVAEMNTGTAVGDFNQY 625 (670)
Q Consensus 551 v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll---~~~~~~v~--~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~ 625 (670)
+|..++.+|..+..... ..+.=-..+++.-|+.++ .+.-|.+- ...-..+..+.+..................
T Consensus 329 LQ~rsA~slA~Li~~~~--~rkp~PndKIvkNLc~flC~D~seTP~~~~~~~~~~gILsl~k~~~~~~~~~~~~~~~~~~ 406 (441)
T PF12054_consen 329 LQQRSAESLARLIQLCV--DRKPCPNDKIVKNLCTFLCVDTSETPEFSHNVDKKDGILSLRKEEDKADHADAASEEREQK 406 (441)
T ss_pred HHHHHHHHHHHHHHHHh--CCCCCCcHHHHHHHhhhhccCcccCCCCCCCcchhhcccchhhhcccccccccccchhhhh
Confidence 99999999999876321 000000112455555555 11122211 111111222221111100000001122233
Q ss_pred HHHHHHhchHHHHHHhhcCCCHHHHHHH
Q 037562 626 AQLVEEAEGLEKIENLQSHDDNGISEKA 653 (670)
Q Consensus 626 ~~~~~~~g~~~~l~~L~~~~~~~v~~~a 653 (670)
...|.+-|+...|..|...-.+++.+..
T Consensus 407 ~a~I~RrGA~~aL~~l~~~FG~~Lf~~l 434 (441)
T PF12054_consen 407 EARIQRRGAELALEQLAKRFGSSLFEKL 434 (441)
T ss_pred hhHHHhcCHHHHHHHHHHHHhHHHHHhh
Confidence 4567888888888888777666666554
No 399
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=56.23 E-value=12 Score=29.81 Aligned_cols=42 Identities=26% Similarity=0.222 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHH
Q 037562 554 EAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTV 597 (670)
Q Consensus 554 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 597 (670)
..+..+..++. .|+....|++.|+++.|+.+|.+++.++...
T Consensus 65 ~~Ik~l~~La~--~P~LYp~lv~l~~v~sL~~LL~HeN~DIai~ 106 (108)
T PF08216_consen 65 EEIKKLSVLAT--APELYPELVELGAVPSLLGLLSHENTDIAID 106 (108)
T ss_pred HHHHHHHHccC--ChhHHHHHHHcCCHHHHHHHHCCCCcceehc
Confidence 45566677777 5788999999999999999999999887543
No 400
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=54.72 E-value=66 Score=26.75 Aligned_cols=100 Identities=20% Similarity=0.207 Sum_probs=59.4
Q ss_pred cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhc---cCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCc
Q 037562 546 NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLL---LCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDF 622 (670)
Q Consensus 546 ~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll---~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~ 622 (670)
+++...-.....-|+..+.. . ..... ++..|..-+ +..+..+..+++..|..++..+...-
T Consensus 14 ~d~~gp~~~~l~eIa~~t~~-~-~~~~~-----I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~--------- 77 (125)
T PF01417_consen 14 NDPWGPPGKLLAEIAQLTYN-S-KDCQE-----IMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERF--------- 77 (125)
T ss_dssp SSSSS--HHHHHHHHHHTTS-C-HHHHH-----HHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHH---------
T ss_pred CCCCCcCHHHHHHHHHHHhc-c-ccHHH-----HHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHH---------
Confidence 44445566666677777764 2 33333 345566666 66778899999999999999877542
Q ss_pred cHHHHHH-HHhchHHHHHHhhc--C----CCHHHHHHHHHHHHHhcCCc
Q 037562 623 NQYAQLV-EEAEGLEKIENLQS--H----DDNGISEKAVEILETYWSSR 664 (670)
Q Consensus 623 ~~~~~~~-~~~g~~~~l~~L~~--~----~~~~v~~~a~~~l~~~~~~~ 664 (670)
..-+ .....+..+.++.. . ....|+++|..+++-+..++
T Consensus 78 ---~~~~~~~~~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~d~~ 123 (125)
T PF01417_consen 78 ---VDELRDHIDIIRELQDFQYVDPKGKDQGQNVREKAKEILELLNDDE 123 (125)
T ss_dssp ---HHHHHHTHHHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHTSHH
T ss_pred ---HHHHHHHHHHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhCCcc
Confidence 3333 23334444444422 1 11349999999998776554
No 401
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=54.71 E-value=4.9 Score=40.06 Aligned_cols=137 Identities=17% Similarity=0.238 Sum_probs=75.8
Q ss_pred CcccccccccccCCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhcccccceeccccccccce
Q 037562 34 RLENILIEESSVMNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITE 112 (670)
Q Consensus 34 ~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~ 112 (670)
+|+++|.+ ..+.-..+++.. ..++.+|+. +..+++|++|++++- .++.+ .+..+..+++|.+|-+.+=.++++
T Consensus 57 GL~eVP~~---LP~~tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 57 GLTEVPAN---LPPETVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKN-NISFI-APDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred CcccCccc---CCCcceEEEecc-CCcccCChhhccchhhhceeccccc-chhhc-ChHhhhhhHhhhHHHhhcCCchhh
Confidence 46666642 234555566633 356677654 356788888888764 34443 234467788888888888777877
Q ss_pred eccccccccccccccccccccccccccccccccccC-CcccCCCCccEEeEecCCCccccccC-CcCCCCccceeee
Q 037562 113 IVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSG-NCAFTFPSLEILVVNYCPNMKIFSGG-ELSTPNLHKVQLS 187 (670)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~~~L~~L~i~~C~~l~~~p~~-~~~~~~L~~l~i~ 187 (670)
++. ..|-.|..|.+-.+.-.+-.|.. .....+|+|..|.+.+ .++++++.+ +....+++.+++.
T Consensus 131 l~k----------~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 131 LPK----------GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred hhh----------hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhh
Confidence 753 23444444433332222222221 0123456666666665 345566653 3345566666654
No 402
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=53.91 E-value=84 Score=30.36 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=47.0
Q ss_pred CChHHHHHHHHHHHHHHHhhhhhhccC---CCCCCccHHHHHHHHhchHHHHHHhhcCC-CHHHHHHHHHHHHHhcCCc
Q 037562 590 ADPKIVTVCLEGLENILKVGVAEMNTG---TAVGDFNQYAQLVEEAEGLEKIENLQSHD-DNGISEKAVEILETYWSSR 664 (670)
Q Consensus 590 ~~~~v~~~a~~~l~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~l~~L~~~~-~~~v~~~a~~~l~~~~~~~ 664 (670)
.|..+...++..+.|++...+...... .+....+.+...|.++|..+.|-.+..+. ..+-.....+++.-+|.+-
T Consensus 132 ~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k~~ 210 (266)
T PF04821_consen 132 RDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFKGQ 210 (266)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHcCC
Confidence 345688889999999988743322110 01123456677888999999998887665 3333344556666666543
No 403
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=53.05 E-value=3.1e+02 Score=30.03 Aligned_cols=365 Identities=11% Similarity=0.044 Sum_probs=173.1
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCC-HHHHHHHHHHHHHHcCCC--hh
Q 037562 239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDY-PQLQFKAAWALTNIASGT--SE 315 (670)
Q Consensus 239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~-~~v~~~a~~~L~~l~~~~--~~ 315 (670)
++..|-..+++++..++..|+-.|.-.-++.+. +.+ ...|..++.+.+. .++...|.-.|+.+..++ .+
T Consensus 453 alALLsdyv~~~~s~~ri~aIlGLglayaGsq~---e~V-----~~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~d 524 (878)
T KOG2005|consen 453 ALALLSDYLQSSSSIHRIGAILGLGLAYAGSQR---EEV-----LELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNED 524 (878)
T ss_pred HHHHHHHhccCCCceeehHHhhhhHHhhcCCch---HHH-----HHHHhHHhcCCCCchhHHHHHHhhcceeEEecCChH
Confidence 344555667788888888888888766555322 222 2245566666542 357777777777766533 22
Q ss_pred hHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHh
Q 037562 316 NTKVVIDHGAVPIFVKLLAS--PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFN 393 (670)
Q Consensus 316 ~~~~i~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~ 393 (670)
.... +++.+++--.. .+.-.|--++ .|+-+..+..+ .+...+..+ ..-...++++ +.++..
T Consensus 525 vts~-----ilqtlmekse~El~d~~~RFL~L-GL~llflgkqe---------~~d~~~e~~-~~i~~~~~~~-~~~lv~ 587 (878)
T KOG2005|consen 525 VTSS-----ILQTLMEKSETELEDQWFRFLAL-GLALLFLGKQE---------SVDAVVETI-KAIEGPIRKH-ESILVK 587 (878)
T ss_pred HHHH-----HHHHHHHhhhhhhhchHHHHHHH-HHHHHHhcccc---------hHHHHHHHH-HHhhhHHHHH-HHHHHH
Confidence 2222 23333332221 3333443333 23333322222 122333333 1112233332 233333
Q ss_pred hhcCCCCCChhhhhhhHHHHHHhhccCC---hhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHH
Q 037562 394 FCRGKPQPPFNQVRPALPVLAQLIRSND---EEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPA 470 (670)
Q Consensus 394 l~~~~~~~~~~~~~~~i~~L~~lL~~~~---~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a 470 (670)
.|..........++. +.+..+-...+ ..-+..|+--++-++-+.+--.+ =.+..+-.++..+++.+|...
T Consensus 588 ~caYaGTGnvl~Iq~--q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~e-----M~lR~f~h~l~yge~~iRrav 660 (878)
T KOG2005|consen 588 SCAYAGTGNVLKIQS--QLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSE-----MVLRHFGHLLHYGEPHIRRAV 660 (878)
T ss_pred HhhccccCceEEech--hhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhH-----HHHHHHHHHHHcCCHHHHHHH
Confidence 333221111111111 11222222111 11122333333334433222112 134566677888999999999
Q ss_pred HHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh-cCCh
Q 037562 471 LRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ-NTEF 549 (670)
Q Consensus 471 ~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~ 549 (670)
--+++-++..+|.. ++++.|..+..+. +.++...|..+++-+.++....+- . +.+..+..... +.+.
T Consensus 661 PLal~llsvSNPq~-------~vlDtLsk~shd~-D~eva~naIfamGLiGAGTnNARl--a--~mLrqlaSYyyKd~~~ 728 (878)
T KOG2005|consen 661 PLALGLLSVSNPQV-------NVLDTLSKFSHDG-DLEVAMNAIFAMGLIGAGTNNARL--A--QMLRQLASYYYKDSKA 728 (878)
T ss_pred HHHHhhhccCCCcc-------hHHHHHHHhccCc-chHHHHHHHHHhccccCCcchHHH--H--HHHHHHHHHHhccchh
Confidence 89999998877652 4677888888888 999999999999999876433221 0 11122222211 2222
Q ss_pred hHHHHHHHHHHHhcCCC---CHH--HHHHH---HHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhh---------hhh
Q 037562 550 DTKKEAAWAISNATKFG---THE--QIKHL---VREGCVKPLCDLLLCADPKIVTVCLEGLENILKVG---------VAE 612 (670)
Q Consensus 550 ~v~~~a~~aL~~l~~~~---~~~--~~~~l---~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~---------~~~ 612 (670)
-.....+..|.++.... +|- .+..+ .-.|.+..+..+++.. .-+....-+.++.+.-.. +..
T Consensus 729 Lf~vriAQGL~hlGKGtltl~p~~~dr~ll~p~alagl~t~~~~~LD~~-i~l~~~~H~~ly~Lv~amqprm~~T~~e~~ 807 (878)
T KOG2005|consen 729 LFVVRIAQGLVHLGKGTLTLSPFHSDRQLLMPTALAGLLTTVFALLDAN-IILLVKSHYLLYFLVLAMQPRMLVTVDEEL 807 (878)
T ss_pred HHHHHHHHHHHHhcCCceecccccchhhhhchHHHHHHHHHHHHHhccc-hhccchHHHHHHHHHHhhCceEEEeecccC
Confidence 33344556666665421 111 11222 2245666666677554 222212223333332211 111
Q ss_pred hccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHH
Q 037562 613 MNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGI 649 (670)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v 649 (670)
++.+ +.-+..+..+..-+.|--..|.-.+.|..|-+
T Consensus 808 ~pl~-V~VRVGqaVdvVGqaGrPKtITg~qTHtTPVl 843 (878)
T KOG2005|consen 808 EPLP-VNVRVGQAVDVVGQAGRPKTITGFQTHTTPVL 843 (878)
T ss_pred cccc-ceeeccchhhhhhccCCCceecceeccCccee
Confidence 1100 01122333455566666666777777766654
No 404
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=52.34 E-value=2.4e+02 Score=31.56 Aligned_cols=72 Identities=11% Similarity=0.087 Sum_probs=57.8
Q ss_pred HHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCH
Q 037562 452 YPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNR 525 (670)
Q Consensus 452 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~ 525 (670)
+..|-..+. ++..|..++..|+.+....+...-.+.+..+++.|+..|..+.+..+...|+.+|..+.-.-+
T Consensus 72 ~~~l~~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip 143 (668)
T PF04388_consen 72 FDKLNDYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIP 143 (668)
T ss_pred HHHHHHHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcccc
Confidence 334444444 346899999999999998888888899999999999999887688888889999988865433
No 405
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=51.36 E-value=1.3e+02 Score=24.41 Aligned_cols=70 Identities=20% Similarity=0.245 Sum_probs=48.4
Q ss_pred CcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHH-----hh-cCCCHHHHHH
Q 037562 579 CVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIEN-----LQ-SHDDNGISEK 652 (670)
Q Consensus 579 ~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~-----L~-~~~~~~v~~~ 652 (670)
++..|..-+.+.++.++..++..+..++.++... |...+........+.. .. ...+..|+++
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~------------f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k 105 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGER------------FHQEVASNDFAVELLKFDKSKLLGDDVSTNVREK 105 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHH------------HHHHHHHhHHHHHHHHhhccccccCCCChHHHHH
Confidence 4566666677889999999999999999887653 3444444444444322 11 2347889999
Q ss_pred HHHHHHHh
Q 037562 653 AVEILETY 660 (670)
Q Consensus 653 a~~~l~~~ 660 (670)
+..+++..
T Consensus 106 ~~~l~~~w 113 (115)
T cd00197 106 AIELVQLW 113 (115)
T ss_pred HHHHHHHH
Confidence 99888754
No 406
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=50.40 E-value=2.8e+02 Score=27.90 Aligned_cols=191 Identities=12% Similarity=0.041 Sum_probs=95.0
Q ss_pred ChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccC-ChHHHHH
Q 037562 367 ALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDG-TNDKVQA 445 (670)
Q Consensus 367 ~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~-~~~~~~~ 445 (670)
++..+..++.+..++.....++.++..=...- .......++..+.+-+++..+.+|..-+.+++..... .......
T Consensus 23 i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~---~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~ 99 (339)
T PF12074_consen 23 IVQGLSPLLSKESNEAALSALLSALFKHLFFL---SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLK 99 (339)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh---CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHH
Confidence 46667777777777777776666655433221 1122266778888888888888999888888887640 0011111
Q ss_pred HHHcCCHHHHHHhcC----CCCccch----hHHHHHHHHhhcCCchhhHH-------HH-hC--C--ChHHHHHhhccCC
Q 037562 446 VIEAGVYPRLVELLG----HSSSSVL----TPALRTIRNIVKGDDFQTQC-------II-NC--G--ALPYFLDMLVHNH 505 (670)
Q Consensus 446 ~~~~~~i~~L~~lL~----~~~~~v~----~~a~~~L~~l~~~~~~~~~~-------l~-~~--~--~~~~L~~~l~~~~ 505 (670)
+.. .+++.+...++ ++-.... ..|.-.+. +.......... +. +. . .-+.+.+-+ .
T Consensus 100 ~~~-~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~-~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl--~- 174 (339)
T PF12074_consen 100 FAE-PFLPKLLQSLKEASANPLQSAQNGELVGAYVLLA-LSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKL--A- 174 (339)
T ss_pred HHH-HHHHHHHHHHHHHHhCCCCccccccHHHHHHHHH-hccccchhhhhhhhhhhhhccCCCcchhcCHHHHhcc--C-
Confidence 222 35555555553 3322221 12222222 11111111000 00 00 0 011222221 2
Q ss_pred chhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcC--ChhHHHHHHHHHHHhcCC
Q 037562 506 EESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNT--EFDTKKEAAWAISNATKF 565 (670)
Q Consensus 506 ~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~ 565 (670)
+++.....+.++..+....+.....-.....-..++.++-+. ..++|+.|..++..+...
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~ 236 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYAS 236 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence 333344445555554433222111000122445667777766 789999999999998876
No 407
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=50.32 E-value=74 Score=27.20 Aligned_cols=74 Identities=9% Similarity=0.018 Sum_probs=56.7
Q ss_pred ccHHHHHHHhc-CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHH-HHHhhcCCC--CHHHHHHHHHHHHHHcC
Q 037562 238 EILPAMVDGVW-SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPR-FVEFLMRQD--YPQLQFKAAWALTNIAS 311 (670)
Q Consensus 238 ~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~-L~~ll~~~~--~~~v~~~a~~~L~~l~~ 311 (670)
+++..+.+.++ +.++.++..|+..|-.+..........++...+++.. |++++.... ...|+..++..+...+.
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 45777888887 4688899999999988877765566677778889987 899986321 15888888888887765
No 408
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=49.70 E-value=4.6 Score=43.68 Aligned_cols=37 Identities=16% Similarity=0.113 Sum_probs=20.7
Q ss_pred CCCCcEEEEecCCCCccc-cCCCccccccceeeecccc
Q 037562 46 MNNLVILCVHCCDHLINL-VPSSTSFQNLTNLVVSHCK 82 (670)
Q Consensus 46 ~~~L~~L~i~~c~~l~~~-~~~~~~~~~L~~L~i~~c~ 82 (670)
+++++.|.+-.-+.=... |-.+..|..|++|++.+|+
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~ 120 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCD 120 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcc
Confidence 445555554433322111 3344568888888888885
No 409
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=49.03 E-value=11 Score=21.00 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=15.1
Q ss_pred CCCccEEeEecCCCccccccCC
Q 037562 154 FPSLEILVVNYCPNMKIFSGGE 175 (670)
Q Consensus 154 ~~~L~~L~i~~C~~l~~~p~~~ 175 (670)
+++|+.|++.++ +++.+|.+.
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHH
Confidence 367888888776 677777654
No 410
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=49.03 E-value=11 Score=21.00 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=15.1
Q ss_pred CCCccEEeEecCCCccccccCC
Q 037562 154 FPSLEILVVNYCPNMKIFSGGE 175 (670)
Q Consensus 154 ~~~L~~L~i~~C~~l~~~p~~~ 175 (670)
+++|+.|++.++ +++.+|.+.
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHH
Confidence 367888888776 677777654
No 411
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=48.97 E-value=4.4 Score=43.81 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=12.0
Q ss_pred ccCCCCcEEEEecCC
Q 037562 44 SVMNNLVILCVHCCD 58 (670)
Q Consensus 44 ~~~~~L~~L~i~~c~ 58 (670)
-.|.+|++|++.+|+
T Consensus 106 fpF~sLr~LElrg~~ 120 (1096)
T KOG1859|consen 106 FPFRSLRVLELRGCD 120 (1096)
T ss_pred ccccceeeEEecCcc
Confidence 457788999998886
No 412
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.89 E-value=87 Score=32.85 Aligned_cols=73 Identities=10% Similarity=0.006 Sum_probs=60.9
Q ss_pred ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCC--ChHHHHHHHHHHHHHHHh
Q 037562 536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCA--DPKIVTVCLEGLENILKV 608 (670)
Q Consensus 536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~~l~~l~~~ 608 (670)
++..|.+.+.+.++.++..|+..|-.+..++...+...+.+.+++..++...+.. +..|+.+++.+|...-..
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~a 113 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQA 113 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHH
Confidence 4555666677778899999999999999988888888899999999999988654 778999999999887654
No 413
>PLN03205 ATR interacting protein; Provisional
Probab=48.65 E-value=3e+02 Score=27.82 Aligned_cols=160 Identities=11% Similarity=0.116 Sum_probs=92.0
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHHhccC---ChHHHHHHHHcCCHHHH---HHh-cCCCCccchhHHHHHHHHhhc
Q 037562 407 RPALPVLAQLIRSNDEEVLTDACWALSYLSDG---TNDKVQAVIEAGVYPRL---VEL-LGHSSSSVLTPALRTIRNIVK 479 (670)
Q Consensus 407 ~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~---~~~~~~~~~~~~~i~~L---~~l-L~~~~~~v~~~a~~~L~~l~~ 479 (670)
...+..|+.+-.-++..+...+++.|..+.++ +..+...-.+.+.+..+ .+. ..+..+.|+..|+.++.-+..
T Consensus 322 qtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlm 401 (652)
T PLN03205 322 KSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVM 401 (652)
T ss_pred HHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhhh
Confidence 45566666666666777777777766655422 22223333333333322 222 234566789999988877765
Q ss_pred CCch--hhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHH---------------------hc--
Q 037562 480 GDDF--QTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVI---------------------DS-- 534 (670)
Q Consensus 480 ~~~~--~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~---------------------~~-- 534 (670)
.... ..+.+....+++.+.++|+......|+++|...+--+.. .+.....+. ..
T Consensus 402 ssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN-CpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~f 480 (652)
T PLN03205 402 STDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN-CPKLYDRFDSLHEEKNSSDTENDSEGNFFALEAF 480 (652)
T ss_pred ccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc-CcHHHHHHhcCCccccccccccccccccccHHHH
Confidence 4433 234444556788889999876567789888766543321 111111111 01
Q ss_pred -CChHHHHHHhh-----cCChhHHHHHHHHHHHhcCCCC
Q 037562 535 -GLIGPIVNLLQ-----NTEFDTKKEAAWAISNATKFGT 567 (670)
Q Consensus 535 -~~i~~L~~ll~-----~~~~~v~~~a~~aL~~l~~~~~ 567 (670)
.++.-|-+++. ..+-++++.|+..|+-++..|.
T Consensus 481 SsIlegLAeCiac~~~s~~dIeLck~aiimLAflASSGk 519 (652)
T PLN03205 481 GKIFEGLADCLTSPRKTSEDLELCRNVIMILALAASSGN 519 (652)
T ss_pred HHHHHHHHHHHcCCCCChhhhHHHHHHHHHHHHHHhcCC
Confidence 13444555554 2356889999999999988753
No 414
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=48.38 E-value=84 Score=27.03 Aligned_cols=123 Identities=14% Similarity=0.087 Sum_probs=81.1
Q ss_pred ChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhC--CCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHH
Q 037562 313 TSENTKVVIDHGAVPIFVKLLAS-PSVDVRKQTVWALGNVAG--DSPRCRDLVLSQGALIPLLAELNENANLSMLRTATW 389 (670)
Q Consensus 313 ~~~~~~~i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~--~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~ 389 (670)
+++.=+.+.+.+++..+++.++. ....++.+.+..+.-+.. ..+..--.+...+.+..++..-.+-.++++...-..
T Consensus 15 ~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~~ee~l~yYIs 94 (149)
T PF09758_consen 15 DPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFSDEEVLSYYIS 94 (149)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCCcchhHHHHHH
Confidence 45566778888899999999887 667788777777776653 222223345566777777777667778888888888
Q ss_pred HHHhhhcCCCCCC--hhhh--hhhHH---HHHHhhccCChhHHHHHHHHHHHh
Q 037562 390 TLFNFCRGKPQPP--FNQV--RPALP---VLAQLIRSNDEEVLTDACWALSYL 435 (670)
Q Consensus 390 ~L~~l~~~~~~~~--~~~~--~~~i~---~L~~lL~~~~~~v~~~al~~L~~l 435 (670)
.|..++..-.... .... .+-.| .-+++..++|.-+|.++-..+-++
T Consensus 95 fLK~lSlkln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Lni 147 (149)
T PF09758_consen 95 FLKTLSLKLNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLNI 147 (149)
T ss_pred HHHHHHhhcCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHhh
Confidence 8888775532211 1111 23334 445666788888887776665554
No 415
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=48.07 E-value=3e+02 Score=27.50 Aligned_cols=179 Identities=12% Similarity=0.139 Sum_probs=100.0
Q ss_pred chhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhh-c---cC----CchhHHHHHHHHHHHhhcCCHHHHHHHHhcCCh
Q 037562 466 VLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDML-V---HN----HEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537 (670)
Q Consensus 466 v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l-~---~~----~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i 537 (670)
++...+..+.......++... +....++.+++.+ . .. .+++|-.-.+..+..+.....+....+.+ .++
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~--v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~-~vf 119 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEE--VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE-AVF 119 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHH--HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH-HHH
Confidence 566666666666654442222 3335666666632 1 11 15556555555555554433344444443 356
Q ss_pred HHHHHHhhcC---ChhHHHHHHHHHHHhcCCC-------CHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHH
Q 037562 538 GPIVNLLQNT---EFDTKKEAAWAISNATKFG-------THEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILK 607 (670)
Q Consensus 538 ~~L~~ll~~~---~~~v~~~a~~aL~~l~~~~-------~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~ 607 (670)
...+.++..+ -|+.+..-...|..+...+ +++..+. .++.++-.+++.+.++...++.++..++.
T Consensus 120 ~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~-----~idsi~wg~kh~~~~I~~~~L~~l~~ll~ 194 (319)
T PF08767_consen 120 ECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKL-----VIDSIVWGFKHTNREISETGLNILLELLN 194 (319)
T ss_dssp HHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH-----HHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 6666777632 3677777776676666532 2222222 45566667799999999999999999998
Q ss_pred hhhhhhccCCCCCCccHHHHHHHHhchHHHHH----HhhcCCCHHHHHHHHHHHHHhc
Q 037562 608 VGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIE----NLQSHDDNGISEKAVEILETYW 661 (670)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~----~L~~~~~~~v~~~a~~~l~~~~ 661 (670)
...... ..+...+-+.-..+.+. .+.+..+.-..+.-..++..+|
T Consensus 195 ~~~~~~---------~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf 243 (319)
T PF08767_consen 195 NVSKTN---------PEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLF 243 (319)
T ss_dssp HHHH-S---------HHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHH
T ss_pred HHHhcC---------HHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHH
Confidence 766511 11344444444444443 3455555555555567777666
No 416
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=48.02 E-value=50 Score=22.42 Aligned_cols=34 Identities=18% Similarity=0.339 Sum_probs=29.2
Q ss_pred HHHHHHhchHHHHHHhhcC-CCHHHHHHHHHHHHH
Q 037562 626 AQLVEEAEGLEKIENLQSH-DDNGISEKAVEILET 659 (670)
Q Consensus 626 ~~~~~~~g~~~~l~~L~~~-~~~~v~~~a~~~l~~ 659 (670)
.+.+.+++.-..+..|..+ ++++++..|..++.+
T Consensus 13 ~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~ 47 (53)
T PF08711_consen 13 VELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKK 47 (53)
T ss_dssp HHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHH
T ss_pred HHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 5678899999999999888 999999999998875
No 417
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=47.46 E-value=4.9e+02 Score=29.83 Aligned_cols=224 Identities=11% Similarity=0.094 Sum_probs=109.7
Q ss_pred hhhHHHHHHhhcc-CChhHHHHHHHHHHHhccC------ChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 037562 407 RPALPVLAQLIRS-NDEEVLTDACWALSYLSDG------TNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVK 479 (670)
Q Consensus 407 ~~~i~~L~~lL~~-~~~~v~~~al~~L~~l~~~------~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 479 (670)
...++.++.++.. .++.++..|...|..++.. +......+.....+..|+..+-.+.. -....+..+..+..
T Consensus 189 ~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~-s~s~lVs~i~vlI~ 267 (838)
T KOG2073|consen 189 QELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDGT-SLSVLVSGIIVLIS 267 (838)
T ss_pred HHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCCc-chhhHHHHHHHHHH
Confidence 6788999998874 3688888888888887755 33345556666666766665544221 11222222222211
Q ss_pred CCchhhHHHHhCC-ChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCC---hHHHHHHhhcCChhHHHHH
Q 037562 480 GDDFQTQCIINCG-ALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGL---IGPIVNLLQNTEFDTKKEA 555 (670)
Q Consensus 480 ~~~~~~~~l~~~~-~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~---i~~L~~ll~~~~~~v~~~a 555 (670)
-...... ..+.. ....+.+-.... ++.+....+.++..-. .+..+.+.+... ++.=...+..+=...|...
T Consensus 268 ll~~~r~-~~~~~~~~~i~~q~~~~~-d~~~~~~~l~~~~p~L---~dF~~lL~~~~~~~~l~tt~g~l~pPLG~~Rlki 342 (838)
T KOG2073|consen 268 LLNPRRD-TVETNSTTTILSQPPSER-DPIVLNELLGAMEPRL---GDFVQLLLEPEKLDLLETTYGELEPPLGFERLKI 342 (838)
T ss_pred hcCcccc-cccccceeeeecCCcccc-CccchHHHHHHHHHHH---HHHHHHhcCCccchhhhhhhhccCCCcchHHHHH
Confidence 1111011 00000 011111222222 4444444444443321 222222222111 1111222222234678888
Q ss_pred HHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChH--HHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhc
Q 037562 556 AWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPK--IVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAE 633 (670)
Q Consensus 556 ~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~--v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g 633 (670)
+..+..+....+......+...++++.+.+++..-... +-..+-.++......+..... +..........++..++
T Consensus 343 ~eliaelL~~~~~~l~~el~~~~~~~r~lD~f~~y~~nN~lh~~~e~~I~~~~~~~~~~~~--~~s~~~~~v~~~l~~c~ 420 (838)
T KOG2073|consen 343 VELIAELLHCSNMTLLNELRAEGIAERLLDLFFEYPWNNFLHAQVESCIVENLSDETNNDS--NISADNEIVDHLLQDCQ 420 (838)
T ss_pred HHHHHHHhccCcHHHHhHHhhhhhHHHHHHHHHhcchhHHHHHHHHHHHHHhhhccccccc--cCCCchHHHHHHHHHhh
Confidence 88898888877777777888888888888877543222 444444444444441111111 00022233456777777
Q ss_pred hHHHH
Q 037562 634 GLEKI 638 (670)
Q Consensus 634 ~~~~l 638 (670)
....+
T Consensus 421 l~~~~ 425 (838)
T KOG2073|consen 421 LSDNI 425 (838)
T ss_pred hhhhh
Confidence 77764
No 418
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=46.82 E-value=3e+02 Score=27.28 Aligned_cols=60 Identities=15% Similarity=0.055 Sum_probs=34.3
Q ss_pred cCChhHHHHHHHHHHHhccCChHHHHHHHHc-CCHHHHHHhcCC-CCcc--chhHHHHHHHHhh
Q 037562 419 SNDEEVLTDACWALSYLSDGTNDKVQAVIEA-GVYPRLVELLGH-SSSS--VLTPALRTIRNIV 478 (670)
Q Consensus 419 ~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~-~~~~--v~~~a~~~L~~l~ 478 (670)
..++.++..-+..|..-...++.....++.. ..++.|+..... ++.+ |+--++..||-+-
T Consensus 167 ~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicy 230 (312)
T PF04869_consen 167 NSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICY 230 (312)
T ss_dssp T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhcCCCCcchHHHHHHHHHHHHH
Confidence 3466777777777766666667677777665 477888887533 3322 4444555555443
No 419
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=46.29 E-value=90 Score=23.93 Aligned_cols=67 Identities=13% Similarity=0.175 Sum_probs=46.1
Q ss_pred HcCCcHHHHhhc-cCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHH---HHHhhcCCCHHHHH
Q 037562 576 REGCVKPLCDLL-LCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEK---IENLQSHDDNGISE 651 (670)
Q Consensus 576 ~~~~i~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---l~~L~~~~~~~v~~ 651 (670)
+...+.++..++ +..+.+++...+.++..++..... .+ .+|.-.. +..-..+.++++..
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~----------------~i-~SGW~~if~il~~aa~~~~e~lv~ 77 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGE----------------NI-KSGWKVIFSILRAAAKDNDESLVR 77 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHH----------------HH-HhccHHHHHHHHHHHhCCCccHHH
Confidence 445677777775 557889999999999999875432 22 4554333 34445667788888
Q ss_pred HHHHHHHH
Q 037562 652 KAVEILET 659 (670)
Q Consensus 652 ~a~~~l~~ 659 (670)
.|-..++.
T Consensus 78 ~af~~~~~ 85 (86)
T PF09324_consen 78 LAFQIVQL 85 (86)
T ss_pred HHHHHHhh
Confidence 88877763
No 420
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=45.68 E-value=1e+02 Score=26.52 Aligned_cols=100 Identities=14% Similarity=0.097 Sum_probs=52.1
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHH
Q 037562 410 LPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCII 489 (670)
Q Consensus 410 i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~ 489 (670)
...++.+|+.+...-....+..|.+=..-..+. ...++.+++..++.-=.....--+..|+..|+.|..+.
T Consensus 24 t~~lielLk~~~~~~~~~lldLL~~RV~PGVD~-AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGY-------- 94 (154)
T PF11791_consen 24 TAELIELLKNPPAGEEAFLLDLLTNRVPPGVDE-AAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGY-------- 94 (154)
T ss_dssp HHHHHHHHHS--TT-HHHHHHHHHHSS--TT-H-HHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SST--------
T ss_pred HHHHHHHHhCCCCccHHHHHHHHHhcCCCCCCh-HHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCC--------
Confidence 345666776665444455566666544322222 22444455555544322222234566777777665422
Q ss_pred hCCChHHHHHhhccCCchhHHHHHHHHHHHhhc
Q 037562 490 NCGALPYFLDMLVHNHEESIKKEVSWIISNITC 522 (670)
Q Consensus 490 ~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 522 (670)
-+..|+.+|.+. +..+...|+.+|.+...
T Consensus 95 ---NV~~LI~~L~~~-d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 95 ---NVQPLIDLLKSD-DEELAEEAAEALKNTLL 123 (154)
T ss_dssp ---THHHHHHGG--G--TTTHHHHHHHHHT--T
T ss_pred ---cHHHHHHHHcCC-cHHHHHHHHHHHHhhHH
Confidence 267899999888 88999999999998754
No 421
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.40 E-value=2.2e+02 Score=28.93 Aligned_cols=114 Identities=17% Similarity=0.177 Sum_probs=77.1
Q ss_pred hHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHH
Q 037562 409 ALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCI 488 (670)
Q Consensus 409 ~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l 488 (670)
-+.-+...+++.+..++..|+.-+..+..+.+.....-. ..+++.+..+..+.+..+|......+-.+...........
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~-~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp 137 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHL-YALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSP 137 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHH-HHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcc
Confidence 345567778888999999999988877655443333111 2466778888888888999999888887654332211111
Q ss_pred HhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCC
Q 037562 489 INCGALPYFLDMLVHNHEESIKKEVSWIISNITCGN 524 (670)
Q Consensus 489 ~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 524 (670)
+-.=+++.+...+.+. .+++|..++..+.-+....
T Consensus 138 ~~~l~~~yi~~AMThi-t~~i~~dslkfL~~Ll~~~ 172 (393)
T KOG2149|consen 138 MVSLLMPYISSAMTHI-TPEIQEDSLKFLSLLLERY 172 (393)
T ss_pred hHHHHHHHHHHHHhhc-cHHHHHhhHHHHHHHHHHc
Confidence 2222455666667777 8899999998888887643
No 422
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=45.29 E-value=3.2e+02 Score=27.12 Aligned_cols=172 Identities=12% Similarity=0.108 Sum_probs=100.2
Q ss_pred ccchhHHHHHHHHhhcCCchhhHHHHhC-----------CChHHHHHhhc------cCCchhHHHHHHHHHHHhhcCCHH
Q 037562 464 SSVLTPALRTIRNIVKGDDFQTQCIINC-----------GALPYFLDMLV------HNHEESIKKEVSWIISNITCGNRE 526 (670)
Q Consensus 464 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~-----------~~~~~L~~~l~------~~~~~~v~~~a~~~L~~l~~~~~~ 526 (670)
-.+|..|+.++.....++++.+..+++. .....+...|- +. ++--...|+.++..+...+++
T Consensus 52 f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~-dpy~~wfAa~il~hll~dn~~ 130 (312)
T PF04869_consen 52 FDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSL-DPYRCWFAAVILMHLLRDNPE 130 (312)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS--HHHHHHHHHHHHHHHTT-HH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccC-CHHHHHHHHHHHHHHHhcCHH
Confidence 3588999999999998887766655531 11222444444 22 444556788899999888777
Q ss_pred HHHHHHhc--C----------ChHHHHHHhh-----cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcC-CcHHHHhhc-
Q 037562 527 QIQAVIDS--G----------LIGPIVNLLQ-----NTEFDTKKEAAWAISNATKFGTHEQIKHLVREG-CVKPLCDLL- 587 (670)
Q Consensus 527 ~~~~l~~~--~----------~i~~L~~ll~-----~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~-~i~~L~~ll- 587 (670)
.+..+.+- | .+..+..+|. +.+++++..-+..|..+... ++.-...|...+ .++.|++..
T Consensus 131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e-~p~AV~~FL~~~s~l~~Li~~~~ 209 (312)
T PF04869_consen 131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFE-CPDAVNDFLSEGSNLQSLIEFSN 209 (312)
T ss_dssp HHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT--HHHHHHHHCSTTHHHHHHHHHS
T ss_pred HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhC-CHHHHHHHHcCcchHHHHHHHhh
Confidence 76665532 1 2555555544 34678888888888888876 677777777664 688888865
Q ss_pred --cCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHH-HHhchHHHHHHhh
Q 037562 588 --LCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLV-EEAEGLEKIENLQ 642 (670)
Q Consensus 588 --~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~l~~L~ 642 (670)
.+.++-|+.-+.-.|+..+.+..+.... ....+...+ .+.|.-..+.++.
T Consensus 210 ~~~~~~~~VqGL~A~LLGicyef~~~~s~~-----~R~~l~~ll~~riG~d~y~~kl~ 262 (312)
T PF04869_consen 210 QSSSEDVLVQGLCAFLLGICYEFSTKDSPI-----PRATLHPLLTKRIGRDNYFSKLE 262 (312)
T ss_dssp --TCCCHHHHHHHHHHHHHHHHT-S-SCCC------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHHHhcCCCCCc-----CHHHHHHHHHHhcCHHHHHHHHH
Confidence 2334456666666677766655433221 223344555 3444433345553
No 423
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=45.12 E-value=2.9e+02 Score=26.64 Aligned_cols=35 Identities=29% Similarity=0.291 Sum_probs=21.2
Q ss_pred HHHHcCCHHHHHHhcCCC-CccchhHHHHHHHHhhc
Q 037562 445 AVIEAGVYPRLVELLGHS-SSSVLTPALRTIRNIVK 479 (670)
Q Consensus 445 ~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~ 479 (670)
.+.+.|+...|+.+.++. ........+.++..+..
T Consensus 173 ~l~~~~v~~lLL~l~s~~~~~~f~~~lLEIi~ll~k 208 (266)
T PF04821_consen 173 ALFESGVLDLLLTLASSPQESDFNLLLLEIIYLLFK 208 (266)
T ss_pred HHHHcCHHHHHHHHHhCccccchhhHHHHHHHHHHc
Confidence 355668888888888775 23333455555555554
No 424
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=44.62 E-value=3.6e+02 Score=27.55 Aligned_cols=104 Identities=13% Similarity=0.105 Sum_probs=67.2
Q ss_pred chhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcC-----ChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCc
Q 037562 506 EESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNT-----EFDTKKEAAWAISNATKFGTHEQIKHLVREGCV 580 (670)
Q Consensus 506 ~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i 580 (670)
+..+..+|..+|+|+..+++.....+.+......+.+.+... ...+...=...|.-+.........+.+++.+++
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 567889999999999999898888888887777777655421 112333333333333322123444555688899
Q ss_pred HHHHhhccCC------------ChHHHHHHHHHHHHHHHhh
Q 037562 581 KPLCDLLLCA------------DPKIVTVCLEGLENILKVG 609 (670)
Q Consensus 581 ~~L~~ll~~~------------~~~v~~~a~~~l~~l~~~~ 609 (670)
+.+.+.++++ +++-...|+.+|..+|...
T Consensus 190 ~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt 230 (532)
T KOG4464|consen 190 ELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVT 230 (532)
T ss_pred HHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhhee
Confidence 9999888432 1255567778887777643
No 425
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=44.59 E-value=25 Score=20.32 Aligned_cols=28 Identities=36% Similarity=0.584 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC
Q 037562 297 QLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS 335 (670)
Q Consensus 297 ~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~ 335 (670)
.+|..|+.+|+++.. ++ +++.|++.+.+
T Consensus 2 ~vR~~aa~aLg~~~~--~~---------a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLGD--EE---------AVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcCC--Hh---------HHHHHHHHhcC
Confidence 588999999999854 33 45566666543
No 426
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=44.20 E-value=2.6e+02 Score=28.20 Aligned_cols=110 Identities=11% Similarity=0.060 Sum_probs=64.0
Q ss_pred hHHHHHHhccc-----C-ChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhcc----------CChhHHHHHHHH
Q 037562 368 LIPLLAELNEN-----A-NLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRS----------NDEEVLTDACWA 431 (670)
Q Consensus 368 i~~Ll~~l~~~-----~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~----------~~~~v~~~al~~ 431 (670)
+|.++.++... . +.......+.++..|..+..-........++|.++.++-. +...+|..|+..
T Consensus 212 lPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~l 291 (343)
T cd08050 212 LPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARL 291 (343)
T ss_pred hhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHH
Confidence 55555555221 1 4555667777777777775444444446677777766631 235789999999
Q ss_pred HHHhccCChHHHHHHHHcCCHHHHHHhcCCCCc--cchhHHHHHHHHhh
Q 037562 432 LSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSS--SVLTPALRTIRNIV 478 (670)
Q Consensus 432 L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~--~v~~~a~~~L~~l~ 478 (670)
+..++........ -+...++..+.+.+.++.. .....|+..|..+.
T Consensus 292 l~~i~~~f~~~y~-~l~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG 339 (343)
T cd08050 292 LAQICRKFSTSYN-TLQPRITRTLLKALLDPKKPLTTHYGAIVGLSALG 339 (343)
T ss_pred HHHHHHHcCCCCC-cHHHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhC
Confidence 9998854332222 1233455566666655432 23555666666553
No 427
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.27 E-value=31 Score=33.94 Aligned_cols=63 Identities=6% Similarity=0.045 Sum_probs=54.4
Q ss_pred HHHHHHHHcCCChhhHHHHHhCCChHHHHHh--hCCCCHHHHHHHHHHHHHhhCCCchhHHHHHh
Q 037562 302 AAWALTNIASGTSENTKVVIDHGAVPIFVKL--LASPSVDVRKQTVWALGNVAGDSPRCRDLVLS 364 (670)
Q Consensus 302 a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~l--L~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~ 364 (670)
..+.+++++...++..+.+.+-|+++.++.- +.+.+|-+++..+.++.++..++.++++.+..
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 6778999999889999999999999988874 56688999999999999999988887776654
No 428
>PRK09169 hypothetical protein; Validated
Probab=42.82 E-value=8.6e+02 Score=31.39 Aligned_cols=107 Identities=17% Similarity=0.142 Sum_probs=43.9
Q ss_pred HHHHHHHhcC-CChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhh-cCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562 240 LPAMVDGVWS-DDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFL-MRQDYPQLQFKAAWALTNIASGTSENT 317 (670)
Q Consensus 240 i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll-~~~~~~~v~~~a~~~L~~l~~~~~~~~ 317 (670)
+..+++.+.+ ++...-..++..+....... ......+-.. .+..++.-| +-++ ...-..++..|..-...++..+
T Consensus 165 v~~lLNalSKWP~~~~c~~aa~~lA~~la~~-~~l~~al~~q-~va~~lnalSKwp~-~~~cr~a~~~lA~rL~~~~~l~ 241 (2316)
T PRK09169 165 FALLLNALSKWPDNTDCQTAAEQLADRLASD-SRLLQAMDAQ-EVANALNALSKWPD-SPRCRNAAERLAERLADEPGLL 241 (2316)
T ss_pred HHHHHHHhccCCCchHHHHHHHHHHHHhccC-HHHHHhcchH-HHHHHHHHHhcCCC-cHHHHHHHHHHHHHHhcChHHH
Confidence 5666666653 33334444445554443332 2222222222 233334444 3345 3444444444444333244433
Q ss_pred HHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHH
Q 037562 318 KVVIDHGAVPIFVKLLAS-PSVDVRKQTVWALGN 350 (670)
Q Consensus 318 ~~i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~ 350 (670)
..+ +.--+..+++-|+. ++.+.-..++..|..
T Consensus 242 ~~l-~~q~va~~LNAlSKWp~~~~c~~aa~~lA~ 274 (2316)
T PRK09169 242 QSL-RAQEVALLLNALSKWPDDEACRQAAEALAA 274 (2316)
T ss_pred Hhc-CHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 222 22234444444443 443333344444443
No 429
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=41.83 E-value=2.8e+02 Score=25.43 Aligned_cols=142 Identities=14% Similarity=0.152 Sum_probs=84.5
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC-CCccchhHH-HHHHHHhhcCCchhhHH
Q 037562 410 LPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH-SSSSVLTPA-LRTIRNIVKGDDFQTQC 487 (670)
Q Consensus 410 i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a-~~~L~~l~~~~~~~~~~ 487 (670)
......+..++..+.+..++.++.......+. ..++.+...+.. +++.+.... ..+++.+....
T Consensus 53 ~~l~~~L~~~~~~E~~~la~~il~~~~~~~~~--------~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------ 118 (213)
T PF08713_consen 53 YELADELWESGYREERYLALLILDKRRKKLTE--------EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------ 118 (213)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHHHHCGGG--H--------HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------
T ss_pred HHHHHHHcCCchHHHHHHHHHHhHHHhhhhhH--------HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------
Confidence 34455667777778887777777654322111 123455566655 445555444 34444443211
Q ss_pred HHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCC
Q 037562 488 IINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGT 567 (670)
Q Consensus 488 l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 567 (670)
....+.+...+.++ ++-+++.+..++........ .. .++..+...+.+++..|+....|+|..++.. +
T Consensus 119 ---~~~~~~~~~W~~s~-~~w~rR~~~v~~~~~~~~~~--~~-----~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~-~ 186 (213)
T PF08713_consen 119 ---PEALELLEKWAKSD-NEWVRRAAIVMLLRYIRKED--FD-----ELLEIIEALLKDEEYYVQKAIGWALREIGKK-D 186 (213)
T ss_dssp ---GGHHHHHHHHHHCS-SHHHHHHHHHCTTTHGGGCH--HH-----HHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT--
T ss_pred ---HHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHhcC--HH-----HHHHHHHHHcCCchHHHHHHHHHHHHHHHHh-C
Confidence 23567788888888 88888888777665544311 11 1233344455678899999999999999998 5
Q ss_pred HHHHHHHHHc
Q 037562 568 HEQIKHLVRE 577 (670)
Q Consensus 568 ~~~~~~l~~~ 577 (670)
++....+++.
T Consensus 187 ~~~v~~~l~~ 196 (213)
T PF08713_consen 187 PDEVLEFLQK 196 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6655554443
No 430
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=41.54 E-value=2.8e+02 Score=25.40 Aligned_cols=140 Identities=18% Similarity=0.180 Sum_probs=87.1
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHH-HHHHHHhhCCCchhHHHH
Q 037562 285 RFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSVDVRKQT-VWALGNVAGDSPRCRDLV 362 (670)
Q Consensus 285 ~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~v~~~a-~~~L~~l~~~~~~~~~~i 362 (670)
....+..++. .+.+..|+.++......... ..++.+-..+.. .+-.+.... ..+++.+....+
T Consensus 55 l~~~L~~~~~-~E~~~la~~il~~~~~~~~~--------~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~~------ 119 (213)
T PF08713_consen 55 LADELWESGY-REERYLALLILDKRRKKLTE--------EDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKHP------ 119 (213)
T ss_dssp HHHHHHCSSC-HHHHHHHHHHHHHCGGG--H--------HHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHHG------
T ss_pred HHHHHcCCch-HHHHHHHHHHhHHHhhhhhH--------HHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhhH------
Confidence 4455667777 78888888888764431111 024556666655 566666655 445555532111
Q ss_pred HhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHH
Q 037562 363 LSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDK 442 (670)
Q Consensus 363 ~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~ 442 (670)
...+.+...+ .+.++-+++.++.++...... ......+..+...+.+++.-|+..+.++|..++...++.
T Consensus 120 ---~~~~~~~~W~-~s~~~w~rR~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~ 189 (213)
T PF08713_consen 120 ---EALELLEKWA-KSDNEWVRRAAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDE 189 (213)
T ss_dssp ---GHHHHHHHHH-HCSSHHHHHHHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHH
T ss_pred ---HHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHH
Confidence 1233344444 788888888887776665554 222455666667778889999999999999999888777
Q ss_pred HHHHHHc
Q 037562 443 VQAVIEA 449 (670)
Q Consensus 443 ~~~~~~~ 449 (670)
....++.
T Consensus 190 v~~~l~~ 196 (213)
T PF08713_consen 190 VLEFLQK 196 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655553
No 431
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=40.27 E-value=12 Score=39.33 Aligned_cols=99 Identities=15% Similarity=0.178 Sum_probs=48.2
Q ss_pred CCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceeccccccccccccccccccccccccc
Q 037562 59 HLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQ 138 (670)
Q Consensus 59 ~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 138 (670)
+++.+|+..+..+.|..|+.+.| .+..+ ++-++.+.+|+.|.+..-. +..++. +...+ .|..|++ .
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~n-ei~sl--psql~~l~slr~l~vrRn~-l~~lp~--------El~~L-pLi~lDf-S 219 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKN-EIQSL--PSQLGYLTSLRDLNVRRNH-LEDLPE--------ELCSL-PLIRLDF-S 219 (722)
T ss_pred ccccCCcccccchhHHHhhhhhh-hhhhc--hHHhhhHHHHHHHHHhhhh-hhhCCH--------HHhCC-ceeeeec-c
Confidence 45556655555566666665544 23333 2344555666666554432 222221 11111 1333333 4
Q ss_pred cccccccccCCcccCCCCccEEeEecCCCccccccC
Q 037562 139 MQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGG 174 (670)
Q Consensus 139 ~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~ 174 (670)
|.++..++. ++..|..|+.|.+.+ .-|++-|..
T Consensus 220 cNkis~iPv--~fr~m~~Lq~l~Len-NPLqSPPAq 252 (722)
T KOG0532|consen 220 CNKISYLPV--DFRKMRHLQVLQLEN-NPLQSPPAQ 252 (722)
T ss_pred cCceeecch--hhhhhhhheeeeecc-CCCCCChHH
Confidence 666666665 255566666666663 335555543
No 432
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=40.02 E-value=2.3e+02 Score=32.33 Aligned_cols=63 Identities=21% Similarity=0.340 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCChHHHHHHhh-cCChhHHHHHHHHHHHhcCC-----CCHHHHHHHHHcCCcHHHHhhc
Q 037562 525 REQIQAVIDSGLIGPIVNLLQ-NTEFDTKKEAAWAISNATKF-----GTHEQIKHLVREGCVKPLCDLL 587 (670)
Q Consensus 525 ~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~-----~~~~~~~~l~~~~~i~~L~~ll 587 (670)
...++.+-+...++.+++++. +.+++++..|...|+.++.. +.....+.+...+.++.|+..+
T Consensus 180 ~~Viq~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~m 248 (838)
T KOG2073|consen 180 TDVIQWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIM 248 (838)
T ss_pred HHHHHHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHH
Confidence 455666667789999999998 55689999999999999887 6666777777666777776644
No 433
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=40.01 E-value=1.2e+02 Score=22.49 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=29.2
Q ss_pred HHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 037562 626 AQLVEEAEGLEKIENLQSHDDNGISEKAVEILET 659 (670)
Q Consensus 626 ~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~ 659 (670)
.+.+...+.-..+..|..|++++|+..|..++..
T Consensus 35 ~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~~ 68 (75)
T smart00509 35 VDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKS 68 (75)
T ss_pred HHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5677788888889999999999999999988864
No 434
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=39.84 E-value=2.6e+02 Score=24.56 Aligned_cols=108 Identities=13% Similarity=0.147 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHhcCC-----CCC---cHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHH-hC
Q 037562 253 SLQLEATTLFINLLSFD-----RSP---PIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVI-DH 323 (670)
Q Consensus 253 ~~~~~a~~~L~~l~~~~-----~~~---~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~ 323 (670)
..+.-+++.+..+.... +.+ ....+++..+.+.+.+.+.+++ +.+-..+++++..+.. ..+..+. +.
T Consensus 37 ~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~-~~i~~~slri~~~l~~---~~~~~Lk~el 112 (168)
T PF12783_consen 37 RSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSD-FPIFSRSLRIFLTLLS---RFRSHLKLEL 112 (168)
T ss_pred HHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 34455555555544332 112 3455666778888888888888 8999999999999885 3333332 11
Q ss_pred C-ChHHHHH-hhCCCC--HHHHHHHHHHHHHhhCCCchhHHHHHh
Q 037562 324 G-AVPIFVK-LLASPS--VDVRKQTVWALGNVAGDSPRCRDLVLS 364 (670)
Q Consensus 324 ~-~i~~L~~-lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~i~~ 364 (670)
+ .++.++. ++.+++ ..-|..++.++..++.+..-..+...+
T Consensus 113 e~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~~l~~lf~N 157 (168)
T PF12783_consen 113 EVFLSHIILRILESDNSSLWQKELALEILRELCKDPQFLVDLFVN 157 (168)
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 1 2344444 555433 467888999999999765544444433
No 435
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=39.67 E-value=17 Score=19.71 Aligned_cols=12 Identities=33% Similarity=0.443 Sum_probs=6.3
Q ss_pred CCccEEeEecCC
Q 037562 155 PSLEILVVNYCP 166 (670)
Q Consensus 155 ~~L~~L~i~~C~ 166 (670)
|+|+.|++++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 566666666664
No 436
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=39.63 E-value=5.7e+02 Score=31.07 Aligned_cols=200 Identities=12% Similarity=0.126 Sum_probs=101.3
Q ss_pred HHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHH
Q 037562 452 YPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAV 531 (670)
Q Consensus 452 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l 531 (670)
+..+++-|...|+.++..|+.-++.+....+......+-.-....+.+++.+. +..||...-.++..+...-.......
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~-~~~VR~~t~~v~s~l~t~lkk~lsp~ 121 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDE-DRTVRLLTHDVFSKLLTKLKKKLSPF 121 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 45677777788899999999999999864332222111111222344455566 99999999999988866433332222
Q ss_pred HhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhc-------------------cCCCh
Q 037562 532 IDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLL-------------------LCADP 592 (670)
Q Consensus 532 ~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll-------------------~~~~~ 592 (670)
++ .+++...-.-.+.+..|...|-..+............-.+.+..+.....+.+ +...+
T Consensus 122 LK-~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~ 200 (1312)
T KOG0803|consen 122 LK-SLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQ 200 (1312)
T ss_pred HH-hhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhH
Confidence 22 13333332223445566666666666655421111111111222222222221 12223
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 037562 593 KIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETY 660 (670)
Q Consensus 593 ~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~ 660 (670)
.+...++.++..++.......+.. .....+...-.-+.+..+..++.+.++..+..++-.+
T Consensus 201 Rvi~ssLl~l~~l~~~~~~~~el~-------~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l 261 (1312)
T KOG0803|consen 201 RVISSSLLLLLKLFKITGDEEELH-------SLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSL 261 (1312)
T ss_pred HHHHHHHHHHHHHHHHhCchHhhh-------hhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 455666777777774433222110 0001111111134467778888877776665555433
No 437
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.58 E-value=6.8e+02 Score=29.29 Aligned_cols=276 Identities=13% Similarity=0.130 Sum_probs=141.6
Q ss_pred HHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC----
Q 037562 260 TLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS---- 335 (670)
Q Consensus 260 ~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~---- 335 (670)
.+|..+...+ .++...+.+..++..++.++-+ ++-|...++++..+...++.... ..-+-.+++.|++
T Consensus 664 DcLisllKnn-teNqklFreanGvklilpflin---dehRSslLrivscLitvdpkqvh----hqelmalVdtLksgmvt 735 (2799)
T KOG1788|consen 664 DCLISLLKNN-TENQKLFREANGVKLILPFLIN---DEHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVT 735 (2799)
T ss_pred HHHHHHHhcc-chhhHHHHhhcCceEEEEeeec---hHHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhccee
Confidence 3455555544 6667777788888877777744 35566667777776654544221 1123355555554
Q ss_pred ----CC----HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccc---------CChhHHHHHHHH---HHhhh
Q 037562 336 ----PS----VDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEN---------ANLSMLRTATWT---LFNFC 395 (670)
Q Consensus 336 ----~~----~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~---------~~~~~~~~a~~~---L~~l~ 395 (670)
.+ .......+.+++.+...+...+..+.+.+++..|+..+... .|.-+....... +..++
T Consensus 736 ~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTla 815 (2799)
T KOG1788|consen 736 RISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLA 815 (2799)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHH
Confidence 11 23444566778888777777778888888888887776321 111111111111 11111
Q ss_pred --cCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChH-HHHHHHHcCCHHHHHHhcCCCCccchhHHHH
Q 037562 396 --RGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTND-KVQAVIEAGVYPRLVELLGHSSSSVLTPALR 472 (670)
Q Consensus 396 --~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~-~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~ 472 (670)
.+..+.......-.-+.+..+|.... -++.+.+. .++.+. +.-...+..+.-.--..||.
T Consensus 816 vcenasNrmklhtvITsqtftsLLresg------------llcvnler~viqlll-----ElalevlvppfLtSEsaAca 878 (2799)
T KOG1788|consen 816 VCENASNRMKLHTVITSQTFTSLLRESG------------LLCVNLERHVIQLLL-----ELALEVLVPPFLTSESAACA 878 (2799)
T ss_pred HhhcchhhhheeeeeeHHHHHHHHHHhc------------cceecchHHHHHHHH-----HHHHHhhCCchhhhhHHHHH
Confidence 11111111000000111222221110 01111010 111111 11112222222222223333
Q ss_pred HHHHhhc-----CC-----chhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHH
Q 037562 473 TIRNIVK-----GD-----DFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVN 542 (670)
Q Consensus 473 ~L~~l~~-----~~-----~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ 542 (670)
.+..+-. +. ....+.+..+|++..++..+-.. .+..+-+-...+..+++.++.+...+-..|.++.|++
T Consensus 879 eVfelednifavntPsGqfnpdk~~iynagavRvlirslLln-ypK~qlefl~lleSlaRaspfnaelltS~gcvellle 957 (2799)
T KOG1788|consen 879 EVFELEDNIFAVNTPSGQFNPDKQKIYNAGAVRVLIRSLLLN-YPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLE 957 (2799)
T ss_pred HHhhcccceeeeccCCCCcCchHhhhcccchhHHHHHHHHhh-ChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHH
Confidence 3333211 11 12244577889999999998888 8889999999999998888888887788899888888
Q ss_pred Hhh---cCChhHHHHHHHHHHH
Q 037562 543 LLQ---NTEFDTKKEAAWAISN 561 (670)
Q Consensus 543 ll~---~~~~~v~~~a~~aL~~ 561 (670)
++. +++......+...+.-
T Consensus 958 IiypflsgsspfLshalkIvem 979 (2799)
T KOG1788|consen 958 IIYPFLSGSSPFLSHALKIVEM 979 (2799)
T ss_pred HhhhhhcCCchHhhccHHHHHH
Confidence 765 4444444444444433
No 438
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.43 E-value=1.8e+02 Score=29.44 Aligned_cols=121 Identities=12% Similarity=0.128 Sum_probs=82.4
Q ss_pred CHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHH
Q 037562 451 VYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQA 530 (670)
Q Consensus 451 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 530 (670)
-+.-++..+.+.+..+|..|+.-+..+....+.... .-...+++.+..++.+. +..+|......+-.+..........
T Consensus 59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~-~~~~~ll~~~~~~i~D~-~~~vR~~~~qll~~~i~~~~~e~~s 136 (393)
T KOG2149|consen 59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQ-SHLYALLQKLRELILDD-DSLVRDALYQLLDSLILPACKEDQS 136 (393)
T ss_pred cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHH-HHHHHHHHHhhhhhcCc-cccHHHHHHHHHHHHHhhcchhhhc
Confidence 355678888999999999999999888775443322 11234677778888888 8899999888888865532211111
Q ss_pred HHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHH
Q 037562 531 VIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKH 573 (670)
Q Consensus 531 l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 573 (670)
..-.=+++.+...+.+-.++++..+...+..+.....+.....
T Consensus 137 p~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~ 179 (393)
T KOG2149|consen 137 PMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRY 179 (393)
T ss_pred chHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHH
Confidence 1111235555566667789999999999999887655554444
No 439
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=37.72 E-value=55 Score=18.50 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhc
Q 037562 383 MLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIR 418 (670)
Q Consensus 383 ~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~ 418 (670)
++..|+++|.++.. ...++.|.+.++
T Consensus 1 VR~~Aa~aLg~igd----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC----------HHHHHHHHHHhc
Confidence 56788888888876 456777776654
No 440
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=37.03 E-value=5.1e+02 Score=27.59 Aligned_cols=74 Identities=15% Similarity=0.196 Sum_probs=52.3
Q ss_pred HHHHHHHHHcCCcHHHHhhcc-CCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHh
Q 037562 568 HEQIKHLVREGCVKPLCDLLL-CADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENL 641 (670)
Q Consensus 568 ~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L 641 (670)
......+.+.+.|+.|+++++ +.++++...|...|..++....+.....+....+++....+.....++.|-..
T Consensus 52 ~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~ 126 (475)
T PF04499_consen 52 TGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDI 126 (475)
T ss_pred HHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHH
Confidence 345566678899999999996 45677888999898888877654332111113467788888888888887554
No 441
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.81 E-value=73 Score=33.37 Aligned_cols=73 Identities=15% Similarity=0.022 Sum_probs=57.4
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHc
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQ-DYPQLQFKAAWALTNIA 310 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~~l~ 310 (670)
+++..|.+.+++.++.++..|+..|-.+........-..+.+.++++.+|...+.. -...||..++..|-.-.
T Consensus 38 eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~ 111 (470)
T KOG1087|consen 38 EAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQ 111 (470)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHH
Confidence 56778888888888899999999887777665445556888999999999998766 43689998888776543
No 442
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.44 E-value=8.7e+02 Score=29.61 Aligned_cols=253 Identities=11% Similarity=0.176 Sum_probs=125.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHH---H-HHHhhcCCCCHHHHHHHHHHHHHHcCCChh
Q 037562 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVP---R-FVEFLMRQDYPQLQFKAAWALTNIASGTSE 315 (670)
Q Consensus 240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~---~-L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~ 315 (670)
+..+++.+.+.|+..+..|+..|.++....+. ... .|++| . +.++..+.+ .+||...-.++..+...-..
T Consensus 43 l~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~---e~~--~~il~~w~~i~~kl~~d~~-~~VR~~t~~v~s~l~t~lkk 116 (1312)
T KOG0803|consen 43 LDIIVKKLLKRDETTKIKALQELSELIDTSDT---EEL--KGILPEWLVIYAKLIIDED-RTVRLLTHDVFSKLLTKLKK 116 (1312)
T ss_pred HHHHHHHHhccChHHHHHHHHhHHHhcccccc---hHH--hhhHHHHHHHHHHHhcCcc-HHHHHHHHHHHHHHHHHHHH
Confidence 67788888899999999999999999654311 211 22333 2 234556667 89999999999998762222
Q ss_pred hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCC-hHHH-HHHh-ccc--------------
Q 037562 316 NTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGA-LIPL-LAEL-NEN-------------- 378 (670)
Q Consensus 316 ~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~-i~~L-l~~l-~~~-------------- 378 (670)
......+ ..++.....-.+.+..+...|-..+...... ...+......+. +-.+ .+.+ ..+
T Consensus 117 ~lsp~LK-~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~-ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee 194 (1312)
T KOG0803|consen 117 KLSPFLK-SLIPPWLGGQFDLDYPVSEAAKASFKDGFAE-EKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEE 194 (1312)
T ss_pred HhhHHHH-hhhhhhhheecccchHHHHHHHHHHHhhcCh-hhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHH
Confidence 1112221 2333333333445566666666666665431 111222221111 1111 1111 000
Q ss_pred ---CChhHHHHHHHHHHhhhcCC-CCCChhhh----hh--hHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHH
Q 037562 379 ---ANLSMLRTATWTLFNFCRGK-PQPPFNQV----RP--ALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIE 448 (670)
Q Consensus 379 ---~~~~~~~~a~~~L~~l~~~~-~~~~~~~~----~~--~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~ 448 (670)
..+.+...++-++..+.... +....... .. .-..+-+++++..+.++.+...++..+.+.-..... -.+
T Consensus 195 ~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~-~~~ 273 (1312)
T KOG0803|consen 195 LESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVM-ESE 273 (1312)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcc-hhh
Confidence 01134444555555444322 11111101 11 123455777788889999988888888765433311 111
Q ss_pred cCCHHH-HHHhcCCCCccchhHHHHHHHHhhcCCc-hhhHH--HHhCCChHHHHHhhc
Q 037562 449 AGVYPR-LVELLGHSSSSVLTPALRTIRNIVKGDD-FQTQC--IINCGALPYFLDMLV 502 (670)
Q Consensus 449 ~~~i~~-L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~--l~~~~~~~~L~~~l~ 502 (670)
...+.. +.....+.+ -+......++......-+ ..... ....++.+.+.+++.
T Consensus 274 ~~~l~~~~~~~~~~~d-~~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ir 330 (1312)
T KOG0803|consen 274 KNYLKPVLLGSIDSLD-HVCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIR 330 (1312)
T ss_pred hhHhhHHHHccccccc-cccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHh
Confidence 223333 333333333 344444444443322222 11111 134567777777776
No 443
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=35.83 E-value=1.5e+02 Score=29.21 Aligned_cols=55 Identities=18% Similarity=0.234 Sum_probs=44.0
Q ss_pred hcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCC-------------CHHHHHHHHHcCCcHHHHhhc
Q 037562 533 DSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFG-------------THEQIKHLVREGCVKPLCDLL 587 (670)
Q Consensus 533 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-------------~~~~~~~l~~~~~i~~L~~ll 587 (670)
+...+..+++-+...+...|..|+.+|..++.+. ...+...+.+.|+++.|..++
T Consensus 58 ~~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L 125 (293)
T PF07923_consen 58 RKDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELL 125 (293)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3456778888888889999999999999998753 234456677899999999988
No 444
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=34.69 E-value=3.3e+02 Score=24.15 Aligned_cols=156 Identities=11% Similarity=0.112 Sum_probs=83.6
Q ss_pred hHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHH
Q 037562 494 LPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKH 573 (670)
Q Consensus 494 ~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~ 573 (670)
=|.|+..|+.. +++......|+.+...-.... ...+.|..+.|.+.+.+.+..-...|......+...-..+....
T Consensus 5 kplLIsCL~~q---~~k~s~~KiL~~iVs~Va~~v-~~~~~~~W~eL~d~Ils~~~~e~~kA~~IF~~L~~~l~~efl~~ 80 (174)
T PF04510_consen 5 KPLLISCLTMQ---ETKESDFKILRRIVSHVAYEV-FDLQEGGWDELSDCILSLSENEPVKAFHIFICLPMPLYGEFLIP 80 (174)
T ss_pred HHHHHHHHHhh---cccHhHHHHHHHHHHHHHHHH-HhcCCCCchhHHHHHHHhhccchHHHHHHHHhCCchhhhhHHHH
Confidence 45677777654 233334444554443211111 11356777777787765444444778888888873225566666
Q ss_pred HHHcCCcHHHHhhccCC-ChHHHHHHHH---HHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCH-H
Q 037562 574 LVREGCVKPLCDLLLCA-DPKIVTVCLE---GLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDN-G 648 (670)
Q Consensus 574 l~~~~~i~~L~~ll~~~-~~~v~~~a~~---~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~-~ 648 (670)
++++ ..+...+.|.++ +.++..+++. ++...++.-+... +.+.+.+.+.. .++.+.++.+...+ +
T Consensus 81 ~~~~-L~~~~~~~L~~p~~~d~~~W~LAl~~a~~~~Iql~e~~~-------~~~~vk~L~~~--mv~Sv~elV~~g~E~~ 150 (174)
T PF04510_consen 81 FMEN-LLPEISKVLLPPEEVDVEDWVLALTGAVCMAIQLLESSM-------RVDLVKELLPK--MVKSVKELVERGMEVG 150 (174)
T ss_pred HHHH-HHHHHHHHcCCchhccHHHHHHHHHHHHHHHHHHhcccc-------HHHHHHHHHHH--HHHHHHHHHHcccHHH
Confidence 6665 666666666554 2344333322 2222222222111 12223334332 56777888777777 7
Q ss_pred HHHHHHHHHHHhcCC
Q 037562 649 ISEKAVEILETYWSS 663 (670)
Q Consensus 649 v~~~a~~~l~~~~~~ 663 (670)
.-.+|..-+++++..
T Consensus 151 ~l~rgl~~~e~~v~~ 165 (174)
T PF04510_consen 151 FLRRGLRDFESFVSR 165 (174)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777888888777643
No 445
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=34.59 E-value=1.7e+02 Score=29.42 Aligned_cols=65 Identities=23% Similarity=0.439 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHcCCChhhHHHHHhCC--ChHHHHHhhCCC---CHHHHHHHHHHHHHhhCCCchhHHHH
Q 037562 297 QLQFKAAWALTNIASGTSENTKVVIDHG--AVPIFVKLLASP---SVDVRKQTVWALGNVAGDSPRCRDLV 362 (670)
Q Consensus 297 ~v~~~a~~~L~~l~~~~~~~~~~i~~~~--~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~i 362 (670)
.+|..|+.++..+.. .......++..+ ++..|+++++.+ ...++..|+.+|..++.+.+...+.+
T Consensus 237 ~iRllAi~~l~~~~~-~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~ 306 (329)
T PF06012_consen 237 QIRLLAIANLVYIHP-ESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVL 306 (329)
T ss_pred HHHHHHHHHHHhhCC-CHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHH
Confidence 556666666666654 667777777776 899999999763 47899999999999997766554443
No 446
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=34.54 E-value=54 Score=29.85 Aligned_cols=90 Identities=13% Similarity=0.182 Sum_probs=55.8
Q ss_pred ccCCCCcEEEEecCCCCccccCCC-ccccccceeeeccc--ccccccccchhhhcccccceeccccccccceeccccccc
Q 037562 44 SVMNNLVILCVHCCDHLINLVPSS-TSFQNLTNLVVSHC--KRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVV 120 (670)
Q Consensus 44 ~~~~~L~~L~i~~c~~l~~~~~~~-~~~~~L~~L~i~~c--~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 120 (670)
..++.|..|.+..- .+..+.+.. ..+|+|+.|.+.+- ..|.++ ..+..+|.|++|.+-+-+--. ....
T Consensus 61 p~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl---~pLa~~p~L~~Ltll~Npv~~-----k~~Y 131 (233)
T KOG1644|consen 61 PHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDL---DPLASCPKLEYLTLLGNPVEH-----KKNY 131 (233)
T ss_pred CCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhc---chhccCCccceeeecCCchhc-----ccCc
Confidence 46778888888654 455665554 35789999999864 334444 456678888888776543111 1111
Q ss_pred cccccccccccccccccccccc
Q 037562 121 AQDEVITFRELKELNLLQMQNL 142 (670)
Q Consensus 121 ~~~~~~~~~~L~~L~l~~~~~l 142 (670)
-.--...+|+|+.|++.+-..=
T Consensus 132 R~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 132 RLYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred eeEEEEecCcceEeehhhhhHH
Confidence 1112346899999988775433
No 447
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=34.41 E-value=8.3e+02 Score=28.76 Aligned_cols=133 Identities=9% Similarity=0.014 Sum_probs=82.3
Q ss_pred ccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCH-HHHHHHHHcCCc
Q 037562 502 VHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTH-EQIKHLVREGCV 580 (670)
Q Consensus 502 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~-~~~~~l~~~~~i 580 (670)
.+- ++.+|..+...|+-.+...|+ .+++...+..+=-.|.+.+..||..++.+|..+...... .....|. ...-
T Consensus 297 RDV-~~~IRaiCiqeLgiWi~~yP~---~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFt-sRFK 371 (1048)
T KOG2011|consen 297 RDV-DPDIRAICIQELGIWIKSYPE---IFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFT-SRFK 371 (1048)
T ss_pred ccC-chHHHHHHHHHHHHHHHhccH---HHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHH-HHHH
Confidence 445 889999999989888776565 456666777777778889999999999999999886321 2222222 2345
Q ss_pred HHHHhhc-cCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHH
Q 037562 581 KPLCDLL-LCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILE 658 (670)
Q Consensus 581 ~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~ 658 (670)
..++++. .+.+..|+...+..+.... ... .+ .-.-+..+..|..+.+++++..|...+.
T Consensus 372 ~RIVeMadrd~~~~Vrav~L~~~~~~~--~~g----------------~L-~d~di~~Vy~Li~d~~r~~~~aa~~fl~ 431 (1048)
T KOG2011|consen 372 DRIVEMADRDRNVSVRAVGLVLCLLLS--SSG----------------LL-SDKDILIVYSLIYDSNRRVAVAAGEFLY 431 (1048)
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHh--ccc----------------cc-ChhHHHHHHHHHhccCcchHHHHHHHHH
Confidence 5667766 3444455444433332221 111 11 1111345677777888887776655443
No 448
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=34.36 E-value=4.8e+02 Score=26.00 Aligned_cols=185 Identities=11% Similarity=0.075 Sum_probs=98.3
Q ss_pred hHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHH-hcCC---CCccch-----hHHHHHHHHhhcCCchhhHHHHhCCC
Q 037562 423 EVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVE-LLGH---SSSSVL-----TPALRTIRNIVKGDDFQTQCIINCGA 493 (670)
Q Consensus 423 ~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~-lL~~---~~~~v~-----~~a~~~L~~l~~~~~~~~~~l~~~~~ 493 (670)
.++...+..+.......++... +...+++.++. .|.+ ..+..| .....++..+-....+....+++ .+
T Consensus 42 ~iKkeIL~Li~t~i~~~~~~~~--v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~-~v 118 (319)
T PF08767_consen 42 TIKKEILKLIETFISKAEDPEE--VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE-AV 118 (319)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHH--HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHhccCCHHH--HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH-HH
Confidence 3555666666665544432222 22355555555 3332 333333 33333333333333334444443 36
Q ss_pred hHHHHHhhccCC--chhHHHHHHHHHHHhhcCCHHHHHHHHh---cCChHHHHHHhhcCChhHHHHHHHHHHHhcCCC--
Q 037562 494 LPYFLDMLVHNH--EESIKKEVSWIISNITCGNREQIQAVID---SGLIGPIVNLLQNTEFDTKKEAAWAISNATKFG-- 566 (670)
Q Consensus 494 ~~~L~~~l~~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~---~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-- 566 (670)
+...+.++..+. -|+.|..-...+.++........-.+-. ..++..++-.+++.+.++...++.++..+....
T Consensus 119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 677777776532 5788888777777776532222111100 124556666777889999999999998887642
Q ss_pred -CHHHHHHHHHcCCcHHHHhhc----cCCChHHHHHHHHHHHHHHHhhh
Q 037562 567 -THEQIKHLVREGCVKPLCDLL----LCADPKIVTVCLEGLENILKVGV 610 (670)
Q Consensus 567 -~~~~~~~l~~~~~i~~L~~ll----~~~~~~v~~~a~~~l~~l~~~~~ 610 (670)
+++....+.+.-..+.|...+ ++.+...-..-..+|..++...+
T Consensus 199 ~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve 247 (319)
T PF08767_consen 199 TNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVE 247 (319)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHH
Confidence 346666666655545544443 33333333444567777776533
No 449
>PRK09169 hypothetical protein; Validated
Probab=34.13 E-value=1.2e+03 Score=30.36 Aligned_cols=109 Identities=17% Similarity=0.087 Sum_probs=52.4
Q ss_pred HHHHHHhhcC-CCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHH
Q 037562 283 VPRFVEFLMR-QDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA-SPSVDVRKQTVWALGNVAGDSPRCRD 360 (670)
Q Consensus 283 l~~L~~ll~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~ 360 (670)
+..++.-++. ++++..+..+ ..+......++..+..+- ...+..++.-++ -++...-..++..|..-...++..+.
T Consensus 165 v~~lLNalSKWP~~~~c~~aa-~~lA~~la~~~~l~~al~-~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~~ 242 (2316)
T PRK09169 165 FALLLNALSKWPDNTDCQTAA-EQLADRLASDSRLLQAMD-AQEVANALNALSKWPDSPRCRNAAERLAERLADEPGLLQ 242 (2316)
T ss_pred HHHHHHHhccCCCchHHHHHH-HHHHHHhccCHHHHHhcc-hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHHH
Confidence 4445555543 4433444444 444444333566555443 334455555444 36655556666666665545444332
Q ss_pred HHHhcCChHHHHHHhcccCChhHHHHHHHHHHhh
Q 037562 361 LVLSQGALIPLLAELNENANLSMLRTATWTLFNF 394 (670)
Q Consensus 361 ~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l 394 (670)
.+ +...+..+++-+.+=++.+.-+.++..|...
T Consensus 243 ~l-~~q~va~~LNAlSKWp~~~~c~~aa~~lA~r 275 (2316)
T PRK09169 243 SL-RAQEVALLLNALSKWPDDEACRQAAEALAAR 275 (2316)
T ss_pred hc-CHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 22 2222555556665544444444455554443
No 450
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=33.29 E-value=1.2e+02 Score=25.82 Aligned_cols=63 Identities=17% Similarity=0.269 Sum_probs=43.7
Q ss_pred hhHHHHHHhhccCC----hhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHH
Q 037562 408 PALPVLAQLIRSND----EEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTI 474 (670)
Q Consensus 408 ~~i~~L~~lL~~~~----~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L 474 (670)
.+++.+.+.+.... .++...++.++.......+ ...+.+.++++.+..++.+ +.++..|+.+|
T Consensus 82 ~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~--~~~i~~~~~l~~~~~~l~~--~~~~~~A~~cl 148 (148)
T PF08389_consen 82 DILEILSQILSQSSSEANEELVKAALKCLKSWISWIP--IELIINSNLLNLIFQLLQS--PELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS---HHHHHSSSHHHHHHHHTTS--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC--HHHhccHHHHHHHHHHcCC--HHHHHHHHHhC
Confidence 34445555555332 7889999999999876433 4556777899999999944 45688888775
No 451
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=33.15 E-value=4.7e+02 Score=26.81 Aligned_cols=85 Identities=16% Similarity=0.049 Sum_probs=52.8
Q ss_pred ChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHH
Q 037562 313 TSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLF 392 (670)
Q Consensus 313 ~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~ 392 (670)
+++..+..++...+-.|+.+..++|+.-|+..-.+|.++.+.-...|..+. .+.-..+++.+.......-....+.+|+
T Consensus 166 d~~vaK~yid~~FvlkLLdLFdSEDpRERe~LKT~LhrIygKfl~~r~fir-k~iNNif~~FIyEte~hnGIaELLEIlg 244 (457)
T KOG2085|consen 166 DPSVAKKYIDQKFVLKLLDLFDSEDPREREFLKTILHRIYGKFLVHRPFIR-KSINNIFLRFIYETERHNGIAELLEILG 244 (457)
T ss_pred CHHHHHHHhhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhhHHHHH-HhhcchhhhhcccccccCCHHHHHHHHH
Confidence 466677778888999999999999999999888888888754444444332 2222334444432222223344455555
Q ss_pred hhhcCC
Q 037562 393 NFCRGK 398 (670)
Q Consensus 393 ~l~~~~ 398 (670)
.+..+.
T Consensus 245 SiIngf 250 (457)
T KOG2085|consen 245 SIINGF 250 (457)
T ss_pred HhcCcc
Confidence 555443
No 452
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=33.12 E-value=2e+02 Score=21.40 Aligned_cols=34 Identities=18% Similarity=0.380 Sum_probs=29.3
Q ss_pred HHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 037562 626 AQLVEEAEGLEKIENLQSHDDNGISEKAVEILET 659 (670)
Q Consensus 626 ~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~ 659 (670)
.+.+...+.-..+..|..|.+++++..|..++..
T Consensus 37 ~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~ 70 (76)
T cd00183 37 VEILKETRIGKKVNSLRKHSNEKIRKLAKALIKS 70 (76)
T ss_pred HHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5678888888889999999999999999988764
No 453
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.93 E-value=7.8e+02 Score=28.02 Aligned_cols=162 Identities=10% Similarity=0.038 Sum_probs=97.0
Q ss_pred HHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCcc
Q 037562 386 TATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSS 465 (670)
Q Consensus 386 ~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~ 465 (670)
.+...+.++-...|.+ ..+...+=.+...+..++..+|..++++...-..+-. ....-..++..+.....++|+.
T Consensus 43 eavvr~~RLFek~Pfp--ifiNs~llrLaDaF~~Gn~llRf~V~rv~~q~g~hln---~v~n~aE~lrri~~V~hsnDp~ 117 (970)
T KOG1988|consen 43 EAVVRFPRLFEKYPFP--IFINSQLLRLADAFPVGNNLLRFAVLRVDQQSGKHLN---KVLNGAEFLRRIFYVDHSNDPV 117 (970)
T ss_pred HHHHHHHHHHhhCCch--hhhhHHHHHHHHHhccCcHHHHHHHHHHHhhccccch---hhhhhhhhhheeEEeecCCCHH
Confidence 4445555655554444 3334455567777888888888888887764322211 1122234566666667778888
Q ss_pred chhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHh-hccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHh
Q 037562 466 VLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDM-LVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLL 544 (670)
Q Consensus 466 v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~-l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll 544 (670)
-|..++.+++.+..--++ .+-.+.++.. +.+. +.---+.|+.+..+++..+.+.... +...+-+++
T Consensus 118 aRAllL~ilg~~s~lipE-------fn~~hhlIr~sl~S~-helE~eaa~~Aaa~Faa~sk~FA~s-----i~gkis~mI 184 (970)
T KOG1988|consen 118 ARALLLRILGQLSALIPE-------FNQVHHLIRISLDSH-HELEVEAAEFAAACFAAQSKDFACS-----ICGKISDMI 184 (970)
T ss_pred HHHHHHHHHHHhhhhccc-------ccchhHHHHHHhcCc-cchhhHHHHHHHhhhhhhhhhhHHH-----HHHHHHHHh
Confidence 899999999988764333 2334444443 4444 4444567788888887754443222 223333444
Q ss_pred hc--CChhHHHHHHHHHHHhcCC
Q 037562 545 QN--TEFDTKKEAAWAISNATKF 565 (670)
Q Consensus 545 ~~--~~~~v~~~a~~aL~~l~~~ 565 (670)
+. -....+..++.++..|...
T Consensus 185 ef~d~~~~mkL~li~Vfs~M~c~ 207 (970)
T KOG1988|consen 185 EFLDLPVPMKLSLIPVFSHMHCH 207 (970)
T ss_pred hcccCCCCcchhHhHHHHHhcch
Confidence 42 2467788888888888764
No 454
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=32.44 E-value=5.7e+02 Score=27.35 Aligned_cols=132 Identities=15% Similarity=0.095 Sum_probs=78.2
Q ss_pred CChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhcc--------CChhHHHHHHHHHHHhccCChHHHHHHHHcC
Q 037562 379 ANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRS--------NDEEVLTDACWALSYLSDGTNDKVQAVIEAG 450 (670)
Q Consensus 379 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~--------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~ 450 (670)
.++..+..|+..|..=+. ....+|.++.++.. .|-....+.+..++.|..+..-.....+. .
T Consensus 219 ~~~~~r~eAL~sL~TDsG---------L~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i~lepYlh-~ 288 (576)
T KOG2549|consen 219 SDEPLRQEALQSLETDSG---------LQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNIFLEPYLH-Q 288 (576)
T ss_pred CCHHHHHHHHHhhccCcc---------HHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCccchhhHHH-H
Confidence 455555555554432111 13345555555542 35667777888888888776544443333 5
Q ss_pred CHHHHHHhcCC----------CCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCC-chhHHHHHHHHHHH
Q 037562 451 VYPRLVELLGH----------SSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNH-EESIKKEVSWIISN 519 (670)
Q Consensus 451 ~i~~L~~lL~~----------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~-~~~v~~~a~~~L~~ 519 (670)
+++.++.++-+ +.+.+|..|+..+..++......... ....+...+.+.+.+.. .......|...|..
T Consensus 289 L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~ 367 (576)
T KOG2549|consen 289 LVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHYGAIAGLSE 367 (576)
T ss_pred HhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhhhHHHHHHH
Confidence 67777776543 23458889999999888765443332 44456677777776552 44555556666665
Q ss_pred hh
Q 037562 520 IT 521 (670)
Q Consensus 520 l~ 521 (670)
+.
T Consensus 368 lg 369 (576)
T KOG2549|consen 368 LG 369 (576)
T ss_pred hh
Confidence 53
No 455
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=31.74 E-value=1.1e+02 Score=31.07 Aligned_cols=192 Identities=11% Similarity=0.109 Sum_probs=94.7
Q ss_pred HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHh
Q 037562 274 IDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP--SVDVRKQTVWALGNV 351 (670)
Q Consensus 274 ~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l 351 (670)
.+..++..++-.|+.+.+++| ++-|...-.+|.++-+.....+..+. .++=..+.+.+... ...+ ...+.+|+.+
T Consensus 170 aK~yid~~FvlkLLdLFdSED-pRERe~LKT~LhrIygKfl~~r~fir-k~iNNif~~FIyEte~hnGI-aELLEIlgSi 246 (457)
T KOG2085|consen 170 AKKYIDQKFVLKLLDLFDSED-PREREFLKTILHRIYGKFLVHRPFIR-KSINNIFLRFIYETERHNGI-AELLEILGSI 246 (457)
T ss_pred HHHHhhHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHhhhHHHHH-HhhcchhhhhcccccccCCH-HHHHHHHHHh
Confidence 456667778999999999999 99999998899888764444444333 34445556665442 1222 2345556655
Q ss_pred hCCCch-hHHHHHhcCChHHHHHHhcccCCh-hHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHH
Q 037562 352 AGDSPR-CRDLVLSQGALIPLLAELNENANL-SMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDAC 429 (670)
Q Consensus 352 ~~~~~~-~~~~i~~~~~i~~Ll~~l~~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al 429 (670)
..+-.- .++.-. .-.+..|+.+- +.... -...+...++.++...++.....++.| +.+.--..+..-....+
T Consensus 247 IngfAlPlKEEhk-iFL~rvLipLh-k~k~l~~yh~QLaYcivQfveKd~kl~~~VIrg----lLK~WP~tnS~KEVmFL 320 (457)
T KOG2085|consen 247 INGFALPLKEEHK-LFLVRVLIPLH-KPKSLSLYHKQLAYCIVQFVEKDPKLTETVIRG----LLKYWPKTNSSKEVMFL 320 (457)
T ss_pred cCcccCcchhHHH-HHHHHhhhccc-cCCCccccccccceeeeeeeccCccccHHHHHH----HHHhcCCCCCcceeeeH
Confidence 533211 111100 00122233332 21111 222355566666666654433333222 22222222111111112
Q ss_pred HHHHHhccC-ChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHH
Q 037562 430 WALSYLSDG-TNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIR 475 (670)
Q Consensus 430 ~~L~~l~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~ 475 (670)
.-+..+.+. .+...+.+.. -+...+..+++++.-.|.+.|+....
T Consensus 321 ~ElEEILe~iep~eFqk~~~-PLf~qia~c~sS~HFQVAEraL~~wn 366 (457)
T KOG2085|consen 321 NELEEILEVIEPSEFQKIMV-PLFRQIARCVSSPHFQVAERALYLWN 366 (457)
T ss_pred hhHHHHHHhcCHHHHHHHhH-HHHHHHHHHcCChhHHHHHHHHHHHh
Confidence 222222211 2222332222 45677788888888888888876553
No 456
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=31.73 E-value=1.7e+02 Score=29.53 Aligned_cols=74 Identities=15% Similarity=0.082 Sum_probs=59.4
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIAS 311 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 311 (670)
+.+..+.+.+...|+.+.+.|+..+..++.......+.++-...+...|..++.+...+.|++.....+.+.+.
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999888776566677777888888888888843337888877777776665
No 457
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.05 E-value=1.6e+02 Score=33.52 Aligned_cols=95 Identities=15% Similarity=0.075 Sum_probs=67.7
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHHhc----cCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCc
Q 037562 407 RPALPVLAQLIRSNDEEVLTDACWALSYLS----DGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDD 482 (670)
Q Consensus 407 ~~~i~~L~~lL~~~~~~v~~~al~~L~~l~----~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 482 (670)
..++..-..+|.+.+-.+|..++.++.... ...+.. -.++. ...+.++..+..+++-+...|+.+|.+++....
T Consensus 802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~L-lPlvh-q~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sg 879 (1014)
T KOG4524|consen 802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLL-LPLVH-QTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSG 879 (1014)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhH-hHHHH-hhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhh
Confidence 556666778888999999999998886533 332222 22332 567889999999999999999999999998776
Q ss_pred hhhHHHHhCCChHHHHHhhcc
Q 037562 483 FQTQCIINCGALPYFLDMLVH 503 (670)
Q Consensus 483 ~~~~~l~~~~~~~~L~~~l~~ 503 (670)
+....-+-..++|.+-.++++
T Consensus 880 DFv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 880 DFVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 654433334566776666543
No 458
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=30.36 E-value=7.4e+02 Score=26.93 Aligned_cols=136 Identities=13% Similarity=0.048 Sum_probs=82.9
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChh--hhhhhHH
Q 037562 334 ASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFN--QVRPALP 411 (670)
Q Consensus 334 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~~i~ 411 (670)
.+-++.+|..|+..|+--+..-|. .+....++.+.--.| .+.+..++.....++-.++...|..... .......
T Consensus 285 ~Dv~d~IRv~c~~~L~dwi~lvP~---yf~k~~~lry~GW~L-SDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~ 360 (740)
T COG5537 285 IDVDDVIRVLCSMSLRDWIGLVPD---YFRKILGLRYNGWSL-SDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKD 360 (740)
T ss_pred cchhHHHHHHHHHHHHHHHhcchH---HHHhhhccccccccc-ccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 446678888888888777655554 333333444444445 6677899999999999999988766522 2255666
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 037562 412 VLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVK 479 (670)
Q Consensus 412 ~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 479 (670)
.++.++..+..-||..++..+..+..-. .++...+-.+..++-+..++-+...-..+.++|.
T Consensus 361 rILE~~r~D~d~VRi~sik~l~~lr~lg------~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK 422 (740)
T COG5537 361 RILEFLRTDSDCVRICSIKSLCYLRILG------VLSSSEILIVSSCMLDIIPDSRENIVESVESICK 422 (740)
T ss_pred HHHHHHhhccchhhHHHHHHHHHHHHhc------ccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 7777777665558888877776654211 2222334445555656555544444444444443
No 459
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=29.89 E-value=32 Score=35.87 Aligned_cols=12 Identities=33% Similarity=0.595 Sum_probs=5.4
Q ss_pred CCCccEEeEecC
Q 037562 154 FPSLEILVVNYC 165 (670)
Q Consensus 154 ~~~L~~L~i~~C 165 (670)
+++|+.+++.++
T Consensus 161 l~~L~~l~l~~n 172 (414)
T KOG0531|consen 161 LKSLKLLDLSYN 172 (414)
T ss_pred chhhhcccCCcc
Confidence 344444444444
No 460
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=29.76 E-value=95 Score=25.42 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=31.0
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH
Q 037562 325 AVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVL 363 (670)
Q Consensus 325 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 363 (670)
+++.|+.-|.+++++|...|+.+|...|.+. .+.+.+.
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v 46 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLV 46 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHH
Confidence 4788999999999999999999999999766 3334433
No 461
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=28.55 E-value=3.4e+02 Score=22.48 Aligned_cols=79 Identities=18% Similarity=0.183 Sum_probs=47.5
Q ss_pred HHHHhhccC-CChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhc------CCCHHHHHHH
Q 037562 581 KPLCDLLLC-ADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQS------HDDNGISEKA 653 (670)
Q Consensus 581 ~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~------~~~~~v~~~a 653 (670)
..|..-+.+ .+..+..+++-.+..++..+.... ..........+..|..+.. +....|+.+|
T Consensus 42 ~~l~~Rl~~~~~w~~v~KsL~llh~ll~~G~~~~-----------~~~~~~~~~~i~~L~~f~~~~~~~~d~g~~VR~ya 110 (127)
T smart00273 42 AVLWRRLNDTKNWRVVYKALILLHYLLRNGSPRV-----------ILEALRNRNRILNLSDFQDIDSRGKDQGANIRTYA 110 (127)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHHHhcCCHHH-----------HHHHHHhhHHHhhHhhCeecCCCCeeCcHHHHHHH
Confidence 334444433 378888899999999998776532 1222222233444555443 2244589999
Q ss_pred HHHHHHhcCCccccCCC
Q 037562 654 VEILETYWSSRVIGRGR 670 (670)
Q Consensus 654 ~~~l~~~~~~~~~~~~~ 670 (670)
..+.+.+..++.....|
T Consensus 111 ~~L~~~l~~~~~l~~er 127 (127)
T smart00273 111 KYLLERLEDDRRLKEER 127 (127)
T ss_pred HHHHHHHcCHHHHhccC
Confidence 88888877766555444
No 462
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=28.18 E-value=3.3e+02 Score=22.22 Aligned_cols=101 Identities=17% Similarity=0.043 Sum_probs=60.5
Q ss_pred ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhcc
Q 037562 536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNT 615 (670)
Q Consensus 536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 615 (670)
+++.|+..+.+.+.+|...|..+|...+.. +.....++... |.+..+-+ ...-.+..++....
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~--~~~le~~v~~~--p~l~~L~~--------~g~~Ll~~~lS~~~----- 71 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACED--KEYLEYLVSLR--PSLDHLGD--------IGSPLLLRFLSTPS----- 71 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--hhhHHHHHHcC--cHHHHHHH--------cCHHHHHHHHcchH-----
Confidence 467888999999999999999999999885 35555555432 23322221 12223334442221
Q ss_pred CCCCCCccHHHHHHHHhchHHH-HHHhhcCCCHHHHHHHHHHHHHhcC
Q 037562 616 GTAVGDFNQYAQLVEEAEGLEK-IENLQSHDDNGISEKAVEILETYWS 662 (670)
Q Consensus 616 ~~~~~~~~~~~~~~~~~g~~~~-l~~L~~~~~~~v~~~a~~~l~~~~~ 662 (670)
.-+.+.+.|.++. +.......|.+=.......+...|.
T Consensus 72 ---------Gf~~L~~~~~v~~El~~W~~~~N~~YV~~vE~~l~~~~~ 110 (115)
T PF14663_consen 72 ---------GFRYLNEIGYVEKELDKWFESFNKEYVKLVEEFLSEALT 110 (115)
T ss_pred ---------HHHHhcchhHHHHHHHHHHHcccHHHHHHHHHHHHHHHh
Confidence 1234555666665 5666777777755555666655543
No 463
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=28.07 E-value=3.1e+02 Score=22.06 Aligned_cols=80 Identities=21% Similarity=0.140 Sum_probs=51.4
Q ss_pred CChHHHHHhhcc---CCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhc--CChhHHHHHHHHHHHhcCCC
Q 037562 492 GALPYFLDMLVH---NHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQN--TEFDTKKEAAWAISNATKFG 566 (670)
Q Consensus 492 ~~~~~L~~~l~~---~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~ 566 (670)
|++..+-+.+.+ ..+...|..+..++..+..-...... .+.|.++..|++ +.++++..|+.+...+...-
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L 85 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHC
Confidence 444555555555 32667888899998888763233222 245666666663 34589999999998888765
Q ss_pred CHHHHHHHHH
Q 037562 567 THEQIKHLVR 576 (670)
Q Consensus 567 ~~~~~~~l~~ 576 (670)
+++....+++
T Consensus 86 ~~~~l~~ll~ 95 (107)
T PF08064_consen 86 DEEDLGPLLD 95 (107)
T ss_pred CHHHHHHHHH
Confidence 6655555443
No 464
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=27.95 E-value=6e+02 Score=25.09 Aligned_cols=124 Identities=11% Similarity=0.173 Sum_probs=80.6
Q ss_pred HHHHHcCCHHHHHHhhcCCCC----------------------HHHHHHHHHHHHHHcCCChhhHHH-------------
Q 037562 275 DEVIQSGVVPRFVEFLMRQDY----------------------PQLQFKAAWALTNIASGTSENTKV------------- 319 (670)
Q Consensus 275 ~~~~~~g~l~~L~~ll~~~~~----------------------~~v~~~a~~~L~~l~~~~~~~~~~------------- 319 (670)
+.+.+.|++|.|-.+++.=.| ..++.+-++.+.+++.++......
T Consensus 3 ~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~~~ 82 (303)
T PF12463_consen 3 TRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVESEL 82 (303)
T ss_pred HHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccccc
Confidence 345677788877776653110 137778888898888743222111
Q ss_pred --------HHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCch--hHHHHHhcCChHHHHHHhcccC--ChhHHH
Q 037562 320 --------VIDHGAVPIFVKLLAS--PSVDVRKQTVWALGNVAGDSPR--CRDLVLSQGALIPLLAELNENA--NLSMLR 385 (670)
Q Consensus 320 --------i~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~--~~~~i~~~~~i~~Ll~~l~~~~--~~~~~~ 385 (670)
--+.|.+..++..+.. .+...+-.-+.++-.+..+.+. -+..+.+.|.++.++..+.++. +..+..
T Consensus 83 ~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q 162 (303)
T PF12463_consen 83 NSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQ 162 (303)
T ss_pred cccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHH
Confidence 1134677777776654 4556676777777777755544 4557888899999998885544 335777
Q ss_pred HHHHHHHhhhcCC
Q 037562 386 TATWTLFNFCRGK 398 (670)
Q Consensus 386 ~a~~~L~~l~~~~ 398 (670)
...-.|+.+...+
T Consensus 163 ~~FDLLGELiK~n 175 (303)
T PF12463_consen 163 SNFDLLGELIKFN 175 (303)
T ss_pred HHHHHHHHHHCCC
Confidence 7777888888775
No 465
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=27.80 E-value=1.5e+02 Score=27.29 Aligned_cols=120 Identities=13% Similarity=0.179 Sum_probs=44.6
Q ss_pred hHHHHhCCChHHHHHhhccCCc-----------------hhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcC
Q 037562 485 TQCIINCGALPYFLDMLVHNHE-----------------ESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNT 547 (670)
Q Consensus 485 ~~~l~~~~~~~~L~~~l~~~~~-----------------~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~ 547 (670)
...+.+.|++..++.++..+.+ ..+-..+...|..++.+++++...+.+. ++.++..+...
T Consensus 36 Q~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~ 113 (207)
T PF01365_consen 36 QKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQL 113 (207)
T ss_dssp HHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCC
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHh
Confidence 3444566777777777653211 3466788899999999888887777653 33333333322
Q ss_pred ChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhh
Q 037562 548 EFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGV 610 (670)
Q Consensus 548 ~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~ 610 (670)
....-..+..++..+... +++-...+.+. .+..+++++.....+ ..-+..|..++..+.
T Consensus 114 ~~~~~~~~~d~l~~i~~d-N~~L~~~i~e~-~I~~~i~ll~~~gr~--~~~L~~L~~lc~~~g 172 (207)
T PF01365_consen 114 QIGYGLGALDVLTEIFRD-NPELCESISEE-HIEKFIELLRKHGRQ--PRYLDFLSSLCVCNG 172 (207)
T ss_dssp CH-TTHHHHHHHHHHHTT---------------------------------------------
T ss_pred hccCCchHHHHHHHHHHC-cHHHHHHhhHH-HHHHHHHHHHHcCCC--hHHHHHHhhhcccCC
Confidence 222223566677777765 55555554444 488888888663322 235666777766544
No 466
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=25.67 E-value=3.7e+02 Score=21.97 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHhhc-cCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCC--
Q 037562 405 QVRPALPVLAQLIR-SNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGD-- 481 (670)
Q Consensus 405 ~~~~~i~~L~~lL~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-- 481 (670)
.....+|.+.+.+. +..++.+..+..+++.++...+ ....+++ .++..+......... ...++.++..++...
T Consensus 3 ~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~-L~~~~l~-~l~~~i~~~~~~~~~--~~~~l~~L~~l~q~q~~ 78 (121)
T PF12397_consen 3 ILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP-LSDEVLN-ALMESILKNWTQETV--QRQALICLIVLCQSQEN 78 (121)
T ss_pred HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC-CcHHHHH-HHHHHHHhccccchh--HHHHHHHHHHHHHcccc
Q ss_pred -----chhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHh
Q 037562 482 -----DFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNI 520 (670)
Q Consensus 482 -----~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l 520 (670)
....+.+.....+...+.-+ .. ...+..-....+..+
T Consensus 79 ~~~lp~~~~~~l~~~~~l~~~L~~l-~~-~~~i~~fl~~l~~~l 120 (121)
T PF12397_consen 79 VDSLPRKVFKALLKLPDLIELLSEL-SE-KYDIDKFLRALLRSL 120 (121)
T ss_pred cccCCHHHHHHHHcCccHHHHHHHH-Hh-cCCHHHHHHHHHHHh
No 467
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.62 E-value=1.1e+02 Score=30.33 Aligned_cols=64 Identities=9% Similarity=-0.011 Sum_probs=50.9
Q ss_pred HHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCC-chhHHHHHHHHHHHhhcCCHHHHHHHH
Q 037562 469 PALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNH-EESIKKEVSWIISNITCGNREQIQAVI 532 (670)
Q Consensus 469 ~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~ 532 (670)
...+.+++++...++....+.+.|+++.+++--.-++ +|-+++....++.++...+.++.+.+.
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~ 439 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIG 439 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHh
Confidence 3678999999988888888889999998887654322 889999999999999887666554443
No 468
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=24.03 E-value=9.7 Score=38.08 Aligned_cols=113 Identities=16% Similarity=0.169 Sum_probs=71.6
Q ss_pred ccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhccccccee
Q 037562 24 VKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM 102 (670)
Q Consensus 24 L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L 102 (670)
-..+++. -.+++.+|....+.+++|+.|+++.- +++.+.+. +..+++|-+|.+.+-.+++++. ...+..|.+|+.|
T Consensus 69 tveirLd-qN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~-k~~F~gL~slqrL 145 (498)
T KOG4237|consen 69 TVEIRLD-QNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLP-KGAFGGLSSLQRL 145 (498)
T ss_pred ceEEEec-cCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhh-hhHhhhHHHHHHH
Confidence 3444443 34688888776788999999999775 45555543 3446788889999999999973 3456778888888
Q ss_pred ccccccccceeccccccccccccccccccccccccccccccccccC
Q 037562 103 EIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSG 148 (670)
Q Consensus 103 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 148 (670)
.+.-+. +..+.. .....+|+|..|.+.+ ..+++++.+
T Consensus 146 llNan~-i~Cir~-------~al~dL~~l~lLslyD-n~~q~i~~~ 182 (498)
T KOG4237|consen 146 LLNANH-INCIRQ-------DALRDLPSLSLLSLYD-NKIQSICKG 182 (498)
T ss_pred hcChhh-hcchhH-------HHHHHhhhcchhcccc-hhhhhhccc
Confidence 775432 222211 1122466666666654 345555553
No 469
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=23.38 E-value=2.5e+02 Score=28.21 Aligned_cols=64 Identities=17% Similarity=0.210 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHcC--CHHHHHHhhcCCC--CHHHHHHHHHHHHHHcCCChhhHH
Q 037562 253 SLQLEATTLFINLLSFDRSPPIDEVIQSG--VVPRFVEFLMRQD--YPQLQFKAAWALTNIASGTSENTK 318 (670)
Q Consensus 253 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~g--~l~~L~~ll~~~~--~~~v~~~a~~~L~~l~~~~~~~~~ 318 (670)
.++..|+..+..+... ......++..+ ++..|++++..++ ..++|..|+.+|..++.......+
T Consensus 237 ~iRllAi~~l~~~~~~--~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~ 304 (329)
T PF06012_consen 237 QIRLLAIANLVYIHPE--SQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSD 304 (329)
T ss_pred HHHHHHHHHHHhhCCC--HHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHH
Confidence 4556666666555332 45566677666 8999999997653 268999999999999985444333
No 470
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=22.57 E-value=7e+02 Score=29.33 Aligned_cols=134 Identities=12% Similarity=0.060 Sum_probs=83.5
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH--HHhcCCh
Q 037562 291 MRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDL--VLSQGAL 368 (670)
Q Consensus 291 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~--i~~~~~i 368 (670)
.+-. +++|..++..|+.-... +-..+++...+..+-..|.+.+..||..++.+|-.|...... ... .+-..+=
T Consensus 297 RDV~-~~IRaiCiqeLgiWi~~---yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~-~~~L~lFtsRFK 371 (1048)
T KOG2011|consen 297 RDVD-PDIRAICIQELGIWIKS---YPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDED-KDKLELFTSRFK 371 (1048)
T ss_pred ccCc-hHHHHHHHHHHHHHHHh---ccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhcccc-chHHHHHHHHHH
Confidence 4456 89999999999988763 334677778888888999999999999999999999865321 111 1111122
Q ss_pred HHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHH
Q 037562 369 IPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSY 434 (670)
Q Consensus 369 ~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~ 434 (670)
..++.+...+.+..|+......+.......- ....-+-.+..++-+.++.++.++...+..
T Consensus 372 ~RIVeMadrd~~~~Vrav~L~~~~~~~~~g~-----L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 372 DRIVEMADRDRNVSVRAVGLVLCLLLSSSGL-----LSDKDILIVYSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHhcccc-----cChhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 3344444355566776655555444433220 112233345566666677777666665543
No 471
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=22.42 E-value=3.6e+02 Score=28.43 Aligned_cols=111 Identities=14% Similarity=0.184 Sum_probs=64.2
Q ss_pred CChHHHHHhhccCC---chhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHH----HHHHHhcC
Q 037562 492 GALPYFLDMLVHNH---EESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAA----WAISNATK 564 (670)
Q Consensus 492 ~~~~~L~~~l~~~~---~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~----~aL~~l~~ 564 (670)
++-..|.++|.... +++++...+.+|.-+--.+. +.-..++..+.+++..++...|.-+. ..|.|+-.
T Consensus 16 ~FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~~-----i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~ 90 (616)
T KOG2229|consen 16 NFPSELKDLLRTNHTVLPPELREKIVKALILLRNKNL-----IVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINK 90 (616)
T ss_pred hhhHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCc-----CCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHh
Confidence 35556777776543 78899988888877733211 12233566777888877777766544 44444332
Q ss_pred CCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhh
Q 037562 565 FGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVA 611 (670)
Q Consensus 565 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~ 611 (670)
.+..+.... -.-..+..+++.+++.-...|+..+..+....-+
T Consensus 91 ~~kn~klnk----slq~~~fsml~~~d~~~ak~a~~~~~eL~kr~iW 133 (616)
T KOG2229|consen 91 KHKNDKLNK----SLQAFMFSMLDQSDSTAAKMALDTMIELYKRNIW 133 (616)
T ss_pred hcccchHHH----HHHHHHHHHHhCCCchhHHHHHHHHHHHHHhccc
Confidence 211111111 1235677888888887556666666666554444
No 472
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=22.05 E-value=1.6e+02 Score=18.87 Aligned_cols=26 Identities=12% Similarity=0.059 Sum_probs=20.3
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHH
Q 037562 407 RPALPVLAQLIRSNDEEVLTDACWAL 432 (670)
Q Consensus 407 ~~~i~~L~~lL~~~~~~v~~~al~~L 432 (670)
..+...+..-+.++++.||..|+.++
T Consensus 17 ~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 17 SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 45667777888889999999887653
No 473
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=21.57 E-value=1.5e+02 Score=30.99 Aligned_cols=68 Identities=15% Similarity=0.174 Sum_probs=51.4
Q ss_pred HHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhh
Q 037562 453 PRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNIT 521 (670)
Q Consensus 453 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~ 521 (670)
..+-.+....+++++.+|..++++++.+.......+-....-..++..+... .+++-+.++.++.-+.
T Consensus 331 ~~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i~~~-~~~~~~~~~~a~~~~~ 398 (763)
T KOG4231|consen 331 KALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLIVTP-EPRVNKAAARALAILG 398 (763)
T ss_pred HHHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHhccc-ccccchhhhHHHHHhh
Confidence 3444555568889999999999999987666554444556667788888877 8888888888887765
No 474
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain
Probab=21.10 E-value=6.9e+02 Score=23.42 Aligned_cols=129 Identities=15% Similarity=0.126 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCC---------C---------HHHHHHHHHHHHHhhCCCch
Q 037562 296 PQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP---------S---------VDVRKQTVWALGNVAGDSPR 357 (670)
Q Consensus 296 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~---------~---------~~v~~~a~~~L~~l~~~~~~ 357 (670)
......++..+..+.. .++....+.+.+.++.+.+.|..- + ..+...-...||.++.. +.
T Consensus 78 ~~y~~vGc~L~~~Ll~-~~eG~~~l~~~~ll~qia~~L~~~d~~~g~~~~~~lfs~~~l~~tl~~~Yf~~IG~lS~~-~~ 155 (226)
T PF14666_consen 78 QKYVRVGCQLLETLLS-SPEGIKYLSESKLLPQIAECLAQVDPMSGITAHDPLFSPQRLSTTLSRGYFLFIGVLSST-PN 155 (226)
T ss_pred hHHHHHHHHHHHHHHc-CcHHHHHHHHccHHHHHHHHHHHHhhhcCCcccccccCHHHHHhhHHHHHHHHHHHHhCC-hh
Confidence 4555566666666766 567666777778888777766432 1 12223344577777755 44
Q ss_pred hHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhc
Q 037562 358 CRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLS 436 (670)
Q Consensus 358 ~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~ 436 (670)
..+.+.+.+++..+..+......+++... ++.++=...+ ...=..+-+.|.+++..+|..|...|+.+.
T Consensus 156 Gl~lLe~~~if~~l~~i~~~~~~~~l~kl---il~~LDY~~~-------~~~R~iLsKaLt~~s~~iRl~aT~~L~~ll 224 (226)
T PF14666_consen 156 GLKLLERWNIFTMLYHIFSLSSRDDLLKL---ILSSLDYSVD-------GHPRIILSKALTSGSESIRLYATKHLRVLL 224 (226)
T ss_pred HHHHHHHCCHHHHHHHHHccCchHHHHHH---HHhhCCCCCc-------cHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 56677788888888888854433344333 3444422211 111134567888899999999998888765
No 475
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=20.76 E-value=3.6e+02 Score=21.66 Aligned_cols=68 Identities=12% Similarity=0.123 Sum_probs=41.7
Q ss_pred hhHHHHHHhhcc----CChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC--CCccchhHHHHHHHHhhcC
Q 037562 408 PALPVLAQLIRS----NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH--SSSSVLTPALRTIRNIVKG 480 (670)
Q Consensus 408 ~~i~~L~~lL~~----~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~ 480 (670)
|++..+...+.+ .+..-+..++.++..+..-...... .+.+.+..+|++ ..++++..|+.+...+...
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~-----~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~ 84 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHIS-----SARPQIMACLQSALEIPELREEALSCWNCFIKT 84 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHH
Confidence 444444444444 4567788888888888753333322 344555556554 3447888888888777653
No 476
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=20.74 E-value=5.8e+02 Score=22.40 Aligned_cols=74 Identities=14% Similarity=0.085 Sum_probs=52.9
Q ss_pred hcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 037562 364 SQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDG 438 (670)
Q Consensus 364 ~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~ 438 (670)
..|.+...+..+..-.|..+....+.++.+..... .-........+|.+..+|++..+.-...++..+..+...
T Consensus 26 ~~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~-~~tLd~c~~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~ 99 (164)
T PF13925_consen 26 RRNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKPE-KWTLDLCVDLLPLIEELLQSKYESYISVALEMLRSILKK 99 (164)
T ss_pred hcCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCcC-cccHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 34456666666666677788777777777554442 234444577889999999999999888999888887744
No 477
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=20.67 E-value=1.1e+03 Score=25.44 Aligned_cols=141 Identities=11% Similarity=0.063 Sum_probs=83.1
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccc-------CChhHHHHHHHHHHhhhcCCCC
Q 037562 328 IFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEN-------ANLSMLRTATWTLFNFCRGKPQ 400 (670)
Q Consensus 328 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~-------~~~~~~~~a~~~L~~l~~~~~~ 400 (670)
.+++.+.+.++..+..|+..|.. ++..+. .+|.++.++... .+-....+++...+.|..+..-
T Consensus 211 ~It~a~~g~~~~~r~eAL~sL~T----DsGL~~------LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i 280 (576)
T KOG2549|consen 211 EITEACTGSDEPLRQEALQSLET----DSGLQQ------LLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI 280 (576)
T ss_pred HHHHHHhcCCHHHHHHHHHhhcc----CccHHH------HHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence 34444444677777776666543 222222 245555555322 3345556777777777777533
Q ss_pred CChhhhhhhHHHHHHhhcc----------CChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCC--Cccchh
Q 037562 401 PPFNQVRPALPVLAQLIRS----------NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHS--SSSVLT 468 (670)
Q Consensus 401 ~~~~~~~~~i~~L~~lL~~----------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~ 468 (670)
........++|.++.++-+ +...+|.-|+..+..++......... +...++..+.+.+.++ ......
T Consensus 281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~-L~~Rit~tl~k~l~D~~~~~st~Y 359 (576)
T KOG2549|consen 281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNN-LQPRITRTLSKALLDNKKPLSTHY 359 (576)
T ss_pred chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHhcCCCCCchhhh
Confidence 3333446677777766532 22468888999999888766655554 4557777777777765 334555
Q ss_pred HHHHHHHHhhc
Q 037562 469 PALRTIRNIVK 479 (670)
Q Consensus 469 ~a~~~L~~l~~ 479 (670)
.|+..|..+..
T Consensus 360 Gai~gL~~lg~ 370 (576)
T KOG2549|consen 360 GAIAGLSELGH 370 (576)
T ss_pred hHHHHHHHhhh
Confidence 66666665543
No 478
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=20.60 E-value=73 Score=33.10 Aligned_cols=68 Identities=19% Similarity=0.145 Sum_probs=40.5
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhc
Q 037562 328 IFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCR 396 (670)
Q Consensus 328 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~ 396 (670)
.+-.+....+++++.+|..++++++.+...-+..+.+...-..+++.+ ....+.+-+.+..++..+..
T Consensus 332 ~lk~~~a~~n~~l~~qa~~~v~~~~~~~~~r~~~~tsp~l~~~~~~~i-~~~~~~~~~~~~~a~~~~~~ 399 (763)
T KOG4231|consen 332 ALKSLCAHKNPELQRQALLAVGNLAFCLENRRILITSPSLRELLMRLI-VTPEPRVNKAAARALAILGE 399 (763)
T ss_pred HHHHHhcccChHHHHHHHHHHHHheecccccccccCChHHHHHHHHHh-cccccccchhhhHHHHHhhh
Confidence 344445568999999999999999976544332222222233344444 45555666666666655543
No 479
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=20.59 E-value=1.3e+03 Score=26.20 Aligned_cols=57 Identities=12% Similarity=0.115 Sum_probs=36.0
Q ss_pred cchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc
Q 037562 465 SVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC 522 (670)
Q Consensus 465 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 522 (670)
.....+++|+..+..+.-.....+-....+-.+...++.. .+.+...++..++.+|.
T Consensus 207 k~~~eiIrClka~mNn~~Gl~~vL~~e~~lllla~aldpr-~pnmm~dvvkllsalci 263 (1102)
T KOG1924|consen 207 KNLQEIIRCLKAFMNNKFGLVLVLRRERSLLLLARALDPR-EPNMMTDVVKLLSALCI 263 (1102)
T ss_pred HHHHHHHHHHHHHhccccceeeeecCCccHHHHHHhcCcc-CccHHHHHHHHHHHHhe
Confidence 4556677787777654433333233334466666677666 77788888888888765
No 480
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=20.56 E-value=4.6e+02 Score=23.01 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=47.1
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHH-hcCCCC--ccchhHHHHHHHHhhcCCc
Q 037562 407 RPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVE-LLGHSS--SSVLTPALRTIRNIVKGDD 482 (670)
Q Consensus 407 ~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~-lL~~~~--~~v~~~a~~~L~~l~~~~~ 482 (670)
..+.+.+.+.+.+++..+...+++++..+..........-.+ -++..+.. ++.+++ ...|..++.++..++....
T Consensus 72 ~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele-~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~~p~ 149 (168)
T PF12783_consen 72 DDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE-VFLSHIILRILESDNSSLWQKELALEILRELCKDPQ 149 (168)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHhChh
Confidence 456677777777777888888999998887432221111111 23344444 566544 2467779999999987443
Done!