Query 037562
Match_columns 670
No_of_seqs 553 out of 4232
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 23:28:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037562.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037562hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ul1_B Importin subunit alpha- 100.0 9.7E-51 3.3E-55 433.2 47.3 422 239-668 58-484 (510)
2 3tpo_A Importin subunit alpha- 100.0 1.9E-49 6.5E-54 425.9 47.9 423 238-668 76-503 (529)
3 4b8j_A Importin subunit alpha- 100.0 2.1E-44 7.1E-49 388.8 49.2 429 237-667 73-501 (528)
4 1wa5_B Importin alpha subunit; 100.0 2E-42 6.8E-47 373.1 49.9 426 238-667 87-515 (530)
5 2jdq_A Importin alpha-1 subuni 100.0 2.4E-41 8.1E-46 358.2 45.7 425 240-667 22-448 (450)
6 3ul1_B Importin subunit alpha- 100.0 6.3E-38 2.2E-42 334.3 33.6 395 204-610 72-481 (510)
7 3tpo_A Importin subunit alpha- 100.0 3.3E-37 1.1E-41 330.9 36.2 375 232-610 111-500 (529)
8 3now_A UNC-45 protein, SD10334 100.0 3.5E-36 1.2E-40 325.9 33.1 397 203-612 344-787 (810)
9 1xm9_A Plakophilin 1; armadill 100.0 4.4E-36 1.5E-40 314.9 31.7 368 282-668 3-455 (457)
10 1jdh_A Beta-catenin; beta-cate 100.0 1.8E-35 6.2E-40 319.8 37.1 427 203-660 74-528 (529)
11 3nmz_A APC variant protein; pr 100.0 3E-36 1E-40 309.5 28.0 369 234-609 28-452 (458)
12 3now_A UNC-45 protein, SD10334 100.0 1.9E-36 6.6E-41 327.9 27.0 434 204-665 305-785 (810)
13 2z6h_A Catenin beta-1, beta-ca 100.0 2.9E-34 1E-38 316.1 40.5 427 203-660 71-525 (644)
14 4b8j_A Importin subunit alpha- 100.0 2.3E-34 8E-39 310.3 32.5 396 202-610 87-499 (528)
15 1wa5_B Importin alpha subunit; 100.0 3.2E-34 1.1E-38 309.0 33.3 397 202-610 100-513 (530)
16 1xm9_A Plakophilin 1; armadill 100.0 2.4E-35 8.4E-40 309.2 23.5 363 239-609 3-451 (457)
17 3l6x_A Catenin delta-1; cateni 100.0 4.6E-34 1.6E-38 299.3 31.2 370 279-666 46-480 (584)
18 2z6g_A B-catenin; FULL-length, 100.0 3.4E-33 1.2E-37 311.8 40.1 433 202-665 206-666 (780)
19 2jdq_A Importin alpha-1 subuni 100.0 3.4E-34 1.2E-38 303.2 30.5 395 202-609 33-445 (450)
20 3l6x_A Catenin delta-1; cateni 100.0 2.7E-34 9.1E-39 301.2 27.6 364 238-609 48-478 (584)
21 1jdh_A Beta-catenin; beta-cate 100.0 2.6E-33 8.9E-38 302.9 28.0 432 202-662 30-489 (529)
22 3nmz_A APC variant protein; pr 100.0 1.5E-33 5.3E-38 289.4 23.3 345 209-565 49-451 (458)
23 2z6h_A Catenin beta-1, beta-ca 100.0 1.3E-32 4.3E-37 303.1 30.6 433 202-663 27-487 (644)
24 2z6g_A B-catenin; FULL-length, 100.0 5.2E-32 1.8E-36 302.2 30.1 433 202-663 163-623 (780)
25 3nmw_A APC variant protein; AR 100.0 6.1E-29 2.1E-33 248.1 19.9 273 251-526 45-338 (354)
26 3nmw_A APC variant protein; AR 100.0 2.8E-28 9.7E-33 243.3 23.8 275 335-611 43-338 (354)
27 4hxt_A De novo protein OR329; 99.9 3.4E-25 1.2E-29 214.3 22.9 240 281-523 2-242 (252)
28 4hxt_A De novo protein OR329; 99.9 1.1E-24 3.7E-29 210.7 23.7 243 238-483 2-245 (252)
29 4db8_A Armadillo-repeat protei 99.9 3.5E-25 1.2E-29 214.1 19.7 239 281-522 12-251 (252)
30 4db8_A Armadillo-repeat protei 99.9 1E-24 3.6E-29 210.8 19.7 239 238-479 12-251 (252)
31 1xqr_A HSPBP1 protein; armadil 99.9 1.3E-23 4.5E-28 203.8 20.0 235 422-665 54-290 (296)
32 3opb_A SWI5-dependent HO expre 99.9 7E-23 2.4E-27 217.2 21.5 322 238-564 334-728 (778)
33 3opb_A SWI5-dependent HO expre 99.9 1.1E-21 3.8E-26 208.1 27.4 400 238-662 255-728 (778)
34 4db6_A Armadillo repeat protei 99.9 1.5E-21 5.1E-26 182.8 22.6 198 407-606 11-208 (210)
35 4db6_A Armadillo repeat protei 99.9 3.1E-21 1E-25 180.6 20.4 199 279-479 10-209 (210)
36 1xqr_A HSPBP1 protein; armadil 99.9 5E-20 1.7E-24 178.6 21.7 225 296-521 54-286 (296)
37 3tt9_A Plakophilin-2; cell adh 99.8 4.8E-20 1.6E-24 170.4 14.8 197 282-480 9-230 (233)
38 3tt9_A Plakophilin-2; cell adh 99.8 1.3E-19 4.5E-24 167.5 13.4 196 239-438 9-230 (233)
39 1b3u_A Protein (protein phosph 99.8 2E-17 6.8E-22 180.8 26.6 383 238-661 203-586 (588)
40 1b3u_A Protein (protein phosph 99.7 2.6E-16 8.8E-21 172.0 27.7 381 239-662 165-548 (588)
41 3grl_A General vesicular trans 99.7 7.1E-15 2.4E-19 152.0 34.1 412 236-661 58-549 (651)
42 4fdd_A Transportin-1; heat rep 99.7 6.3E-17 2.1E-21 184.4 20.0 386 202-611 61-475 (852)
43 4fdd_A Transportin-1; heat rep 99.7 2.5E-16 8.5E-21 179.5 22.3 391 242-661 52-470 (852)
44 2vgl_B AP-2 complex subunit be 99.7 2.3E-15 7.8E-20 163.1 26.7 373 238-660 49-455 (591)
45 3grl_A General vesicular trans 99.7 3.9E-14 1.3E-18 146.5 30.8 370 236-612 19-454 (651)
46 1oyz_A Hypothetical protein YI 99.7 8.6E-15 2.9E-19 143.3 23.1 258 278-603 20-278 (280)
47 2vgl_B AP-2 complex subunit be 99.6 7.8E-15 2.7E-19 159.0 21.0 373 240-659 123-529 (591)
48 1oyz_A Hypothetical protein YI 99.6 3.3E-14 1.1E-18 139.1 21.7 255 238-561 23-279 (280)
49 1w63_A Adapter-related protein 99.6 1.9E-13 6.5E-18 148.5 24.6 327 238-609 107-453 (618)
50 2bpt_A Importin beta-1 subunit 99.5 5.1E-13 1.8E-17 152.8 25.7 356 238-610 324-714 (861)
51 1ibr_B P95, importin beta-1 su 99.5 6.8E-13 2.3E-17 140.1 23.1 389 240-662 3-437 (462)
52 2bpt_A Importin beta-1 subunit 99.5 6.2E-13 2.1E-17 152.2 24.3 398 240-661 371-810 (861)
53 1qgr_A Protein (importin beta 99.5 5.7E-13 2E-17 152.8 23.5 425 202-660 143-677 (876)
54 1w63_A Adapter-related protein 99.5 4.3E-13 1.5E-17 145.7 21.1 327 239-608 143-491 (618)
55 1u6g_C TIP120 protein, CAND1; 99.5 3.6E-12 1.2E-16 151.0 26.4 405 239-661 7-462 (1230)
56 1ibr_B P95, importin beta-1 su 99.5 2.6E-13 8.7E-18 143.4 13.8 363 238-611 35-441 (462)
57 1qgr_A Protein (importin beta 99.5 2.5E-12 8.4E-17 147.5 23.0 406 239-661 367-826 (876)
58 1u6g_C TIP120 protein, CAND1; 99.4 5.1E-12 1.8E-16 149.8 21.8 424 201-660 60-546 (1230)
59 3ltm_A Alpha-REP4; protein eng 99.4 6.9E-12 2.4E-16 116.7 17.7 189 237-482 18-206 (211)
60 3ltm_A Alpha-REP4; protein eng 99.4 9.6E-12 3.3E-16 115.7 17.1 187 280-523 18-204 (211)
61 3ltj_A Alpharep-4; protein eng 99.4 1.2E-11 4.1E-16 114.1 17.5 184 238-478 14-197 (201)
62 3ltj_A Alpharep-4; protein eng 99.4 2E-11 6.7E-16 112.7 18.1 184 281-521 14-197 (201)
63 4fcg_A Uncharacterized protein 99.3 1.1E-11 3.8E-16 123.6 12.8 152 23-190 128-288 (328)
64 4fcg_A Uncharacterized protein 99.3 1.1E-11 3.7E-16 123.7 11.8 154 20-187 148-309 (328)
65 2vgl_A Adaptor protein complex 99.3 4.1E-10 1.4E-14 121.8 24.1 329 239-607 112-470 (621)
66 2vgl_A Adaptor protein complex 99.3 8.4E-10 2.9E-14 119.4 25.4 328 238-607 74-433 (621)
67 2db0_A 253AA long hypothetical 99.1 2E-08 6.8E-13 84.7 18.9 218 322-565 30-247 (253)
68 4ady_A RPN2, 26S proteasome re 99.0 3.1E-08 1.1E-12 108.0 22.9 306 238-604 392-716 (963)
69 2ast_B S-phase kinase-associat 99.0 1.5E-10 5.2E-15 116.3 3.9 60 127-189 220-282 (336)
70 2ast_B S-phase kinase-associat 99.0 1.1E-10 3.8E-15 117.3 2.0 161 22-190 93-258 (336)
71 2xwt_C Thyrotropin receptor; s 99.0 2.6E-09 9E-14 101.2 10.9 83 23-107 32-115 (239)
72 3b2a_A TON_1937, putative unch 99.0 3.6E-08 1.2E-12 87.2 16.9 226 407-660 32-259 (265)
73 4ezg_A Putative uncharacterize 98.9 3E-09 1E-13 97.4 10.6 147 23-189 45-191 (197)
74 3tjz_B Coatomer subunit gamma; 98.9 5.3E-08 1.8E-12 95.6 18.9 278 239-561 69-350 (355)
75 4gmo_A Putative uncharacterize 98.9 1.7E-08 5.7E-13 110.8 16.7 217 280-521 34-257 (684)
76 2xwt_C Thyrotropin receptor; s 98.9 7.8E-09 2.7E-13 98.0 11.3 154 21-188 54-214 (239)
77 3tjz_B Coatomer subunit gamma; 98.9 7.8E-08 2.7E-12 94.4 18.4 301 298-656 44-347 (355)
78 4ady_A RPN2, 26S proteasome re 98.9 3.5E-07 1.2E-11 99.9 25.0 291 252-607 372-676 (963)
79 2db0_A 253AA long hypothetical 98.9 6.7E-07 2.3E-11 75.6 20.2 215 280-522 31-246 (253)
80 1ozn_A Reticulon 4 receptor; N 98.8 2.2E-08 7.5E-13 97.7 13.2 58 23-82 33-91 (285)
81 1h6u_A Internalin H; cell adhe 98.8 2E-08 6.9E-13 99.0 11.9 76 23-107 64-139 (308)
82 3zyj_A Leucine-rich repeat-con 98.8 2.3E-08 7.8E-13 104.3 12.5 35 153-188 253-288 (440)
83 4ezg_A Putative uncharacterize 98.8 4.1E-08 1.4E-12 89.7 12.7 128 21-166 65-192 (197)
84 1h6t_A Internalin B; cell adhe 98.8 3.9E-08 1.3E-12 96.0 12.9 125 44-190 87-211 (291)
85 2o6q_A Variable lymphocyte rec 98.8 5.7E-08 2E-12 93.8 13.6 61 126-189 154-215 (270)
86 4gmo_A Putative uncharacterize 98.8 2.4E-08 8.3E-13 109.5 12.1 198 408-608 35-259 (684)
87 1h6u_A Internalin H; cell adhe 98.8 2.7E-08 9.3E-13 98.1 11.2 77 23-108 42-118 (308)
88 1m9s_A Internalin B; cell inva 98.8 4.3E-08 1.5E-12 105.4 13.5 144 22-190 65-208 (605)
89 3zyj_A Leucine-rich repeat-con 98.8 4.4E-08 1.5E-12 102.1 13.2 87 23-113 89-176 (440)
90 4fmz_A Internalin; leucine ric 98.8 2.7E-08 9.3E-13 100.2 11.0 145 22-189 177-321 (347)
91 3vq2_A TLR4, TOLL-like recepto 98.7 1.5E-08 5.2E-13 110.6 9.3 132 45-188 422-554 (606)
92 1ozn_A Reticulon 4 receptor; N 98.7 5.3E-08 1.8E-12 95.0 11.8 84 22-108 56-140 (285)
93 3zyi_A Leucine-rich repeat-con 98.7 6.6E-08 2.2E-12 101.2 12.7 81 23-107 76-157 (452)
94 4fmz_A Internalin; leucine ric 98.7 6.8E-08 2.3E-12 97.3 12.4 79 23-110 67-145 (347)
95 3rfs_A Internalin B, repeat mo 98.7 1.1E-07 3.8E-12 91.8 13.3 150 23-189 64-215 (272)
96 3b2a_A TON_1937, putative unch 98.7 7.8E-07 2.7E-11 78.8 16.9 187 238-438 33-219 (265)
97 3zyi_A Leucine-rich repeat-con 98.7 7.1E-08 2.4E-12 100.9 12.3 36 152-188 263-299 (452)
98 2z66_A Variable lymphocyte rec 98.7 5.4E-08 1.9E-12 96.0 9.9 160 22-188 78-257 (306)
99 1ho8_A Vacuolar ATP synthase s 98.7 7.1E-06 2.4E-10 82.2 24.9 321 323-661 76-475 (480)
100 1p9a_G Platelet glycoprotein I 98.7 1.9E-07 6.5E-12 91.0 13.4 130 45-188 75-204 (290)
101 2ell_A Acidic leucine-rich nuc 98.7 2.8E-08 9.6E-13 88.3 6.9 79 23-107 25-105 (168)
102 1h6t_A Internalin B; cell adhe 98.7 1E-07 3.4E-12 93.1 11.4 143 23-190 47-189 (291)
103 3o6n_A APL1; leucine-rich repe 98.6 1.2E-07 4.3E-12 97.0 12.0 62 125-189 244-305 (390)
104 2z80_A TOLL-like receptor 2, v 98.6 3.5E-08 1.2E-12 99.6 7.6 156 23-190 53-209 (353)
105 3m19_A Variable lymphocyte rec 98.6 2.4E-07 8.3E-12 88.3 13.0 153 23-190 36-190 (251)
106 3o53_A Protein LRIM1, AGAP0063 98.6 1.1E-07 3.6E-12 94.4 10.6 129 46-190 119-248 (317)
107 1xku_A Decorin; proteoglycan, 98.6 1.9E-07 6.5E-12 93.2 12.5 160 21-189 75-273 (330)
108 2qk2_A LP04448P; mini spindles 98.6 2.5E-07 8.6E-12 87.6 12.7 184 370-565 19-206 (242)
109 3t6q_A CD180 antigen; protein- 98.6 1.9E-07 6.5E-12 101.8 13.2 82 22-107 278-360 (606)
110 2o6q_A Variable lymphocyte rec 98.6 2.5E-07 8.7E-12 89.2 12.4 152 23-189 38-191 (270)
111 2z80_A TOLL-like receptor 2, v 98.6 1.6E-07 5.6E-12 94.6 11.2 141 34-189 42-184 (353)
112 1p9a_G Platelet glycoprotein I 98.6 2.8E-07 9.5E-12 89.8 12.2 150 23-189 32-182 (290)
113 3o6n_A APL1; leucine-rich repe 98.6 2.6E-07 8.8E-12 94.7 12.6 38 152-189 245-282 (390)
114 3oja_B Anopheles plasmodium-re 98.6 2.1E-07 7.2E-12 101.0 12.4 81 23-107 100-181 (597)
115 2id5_A Lingo-1, leucine rich r 98.6 2.2E-07 7.5E-12 98.0 12.3 161 22-189 56-234 (477)
116 3oja_B Anopheles plasmodium-re 98.6 1.9E-07 6.6E-12 101.3 11.8 59 21-81 122-181 (597)
117 1ogq_A PGIP-2, polygalacturona 98.6 1.3E-07 4.4E-12 93.5 9.2 81 23-107 51-135 (313)
118 1m9s_A Internalin B; cell inva 98.6 1.1E-07 3.8E-12 102.2 9.3 143 23-190 44-186 (605)
119 3vq2_A TLR4, TOLL-like recepto 98.6 1.2E-07 4E-12 103.6 9.6 162 23-189 351-531 (606)
120 1o6v_A Internalin A; bacterial 98.6 3.6E-07 1.2E-11 96.0 12.8 145 23-189 222-385 (466)
121 2qk2_A LP04448P; mini spindles 98.6 1.7E-07 5.8E-12 88.8 9.2 185 327-522 18-205 (242)
122 1o6v_A Internalin A; bacterial 98.5 4E-07 1.4E-11 95.6 12.7 77 23-108 69-145 (466)
123 1ho8_A Vacuolar ATP synthase s 98.5 9.9E-06 3.4E-10 81.2 21.4 323 281-608 77-477 (480)
124 2z62_A TOLL-like receptor 4, v 98.5 5.5E-07 1.9E-11 87.2 12.2 154 22-189 52-234 (276)
125 2z66_A Variable lymphocyte rec 98.5 2.1E-07 7.1E-12 91.8 9.3 130 46-188 77-208 (306)
126 2id5_A Lingo-1, leucine rich r 98.5 4.3E-07 1.5E-11 95.8 12.3 59 127-188 270-329 (477)
127 3oja_A Leucine-rich immune mol 98.5 2.6E-07 8.8E-12 97.3 10.4 127 46-188 119-246 (487)
128 2qk1_A Protein STU2; STU2P, XM 98.5 4.1E-07 1.4E-11 85.9 10.6 190 286-479 21-220 (249)
129 2je0_A Acidic leucine-rich nuc 98.5 3.7E-08 1.3E-12 85.5 3.0 80 23-108 18-99 (149)
130 1xku_A Decorin; proteoglycan, 98.5 9.5E-07 3.2E-11 88.1 13.7 78 23-107 53-131 (330)
131 3rfs_A Internalin B, repeat mo 98.5 6.8E-07 2.3E-11 86.3 12.2 145 21-186 84-229 (272)
132 1xeu_A Internalin C; cellular 98.5 5.2E-07 1.8E-11 86.4 11.0 142 23-190 42-183 (263)
133 1ogq_A PGIP-2, polygalacturona 98.5 3.3E-07 1.1E-11 90.6 9.7 162 21-189 100-278 (313)
134 4ecn_A Leucine-rich repeat pro 98.5 3.7E-07 1.3E-11 101.9 11.2 157 18-189 444-629 (876)
135 2ft3_A Biglycan; proteoglycan, 98.5 9E-07 3.1E-11 88.3 12.9 160 21-189 77-274 (332)
136 2z81_A CD282 antigen, TOLL-lik 98.5 5.2E-07 1.8E-11 97.1 11.2 59 127-190 449-508 (549)
137 3v47_A TOLL-like receptor 5B a 98.5 7.5E-07 2.5E-11 93.3 12.0 58 23-81 55-113 (455)
138 3rgz_A Protein brassinosteroid 98.5 7.4E-07 2.5E-11 99.8 12.6 63 44-108 487-549 (768)
139 2z63_A TOLL-like receptor 4, v 98.4 3.1E-07 1.1E-11 99.3 8.8 61 126-189 467-528 (570)
140 3t6q_A CD180 antigen; protein- 98.4 7.4E-07 2.5E-11 97.1 11.7 154 23-187 255-408 (606)
141 1te4_A Conserved protein MTH18 98.4 6.1E-08 2.1E-12 81.8 2.3 121 280-435 11-131 (131)
142 2qk1_A Protein STU2; STU2P, XM 98.4 2E-06 7E-11 81.1 13.0 191 371-564 21-220 (249)
143 3bz5_A Internalin-J, INLJ; leu 98.4 9.9E-07 3.4E-11 91.9 11.9 54 127-187 146-199 (457)
144 2z7x_B TOLL-like receptor 1, v 98.4 3.7E-07 1.3E-11 97.5 8.8 159 23-189 303-478 (520)
145 2ell_A Acidic leucine-rich nuc 98.4 4.9E-07 1.7E-11 80.1 8.1 134 44-192 21-160 (168)
146 2z63_A TOLL-like receptor 4, v 98.4 6E-07 2E-11 97.1 10.4 156 22-190 347-505 (570)
147 3rgz_A Protein brassinosteroid 98.4 3.9E-07 1.3E-11 102.0 8.9 133 45-189 416-548 (768)
148 2ft3_A Biglycan; proteoglycan, 98.4 1.9E-06 6.5E-11 85.9 13.1 79 23-108 55-134 (332)
149 3g06_A SSPH2 (leucine-rich rep 98.4 1.4E-06 4.7E-11 93.9 12.7 31 154-188 240-270 (622)
150 2z81_A CD282 antigen, TOLL-lik 98.4 8.8E-07 3E-11 95.3 10.9 155 23-189 27-182 (549)
151 1wwl_A Monocyte differentiatio 98.4 5.3E-07 1.8E-11 89.0 7.9 133 47-189 149-284 (312)
152 4eco_A Uncharacterized protein 98.4 4.3E-07 1.5E-11 99.2 7.9 88 18-108 202-316 (636)
153 2p1m_B Transport inhibitor res 98.4 5.7E-08 1.9E-12 105.8 0.9 164 23-191 67-247 (594)
154 4ecn_A Leucine-rich repeat pro 98.4 4.5E-07 1.6E-11 101.2 8.2 152 20-189 489-654 (876)
155 3m19_A Variable lymphocyte rec 98.4 1.8E-06 6.3E-11 82.1 11.3 132 21-166 58-190 (251)
156 2iw3_A Elongation factor 3A; a 98.4 5.1E-05 1.7E-09 84.2 23.8 307 236-564 12-324 (986)
157 3v47_A TOLL-like receptor 5B a 98.4 1.2E-06 4.3E-11 91.6 10.8 85 22-108 79-165 (455)
158 4eco_A Uncharacterized protein 98.4 4.2E-07 1.4E-11 99.3 7.2 152 20-188 247-411 (636)
159 3e4g_A ATP synthase subunit S, 98.4 2.9E-07 1E-11 80.3 4.7 17 128-144 138-154 (176)
160 3bz5_A Internalin-J, INLJ; leu 98.4 2.4E-06 8.3E-11 89.0 12.6 52 23-81 65-116 (457)
161 4glp_A Monocyte differentiatio 98.3 1.9E-06 6.5E-11 84.9 11.2 159 21-189 116-282 (310)
162 2o6s_A Variable lymphocyte rec 98.3 1.9E-06 6.5E-11 79.3 9.9 129 46-188 27-157 (208)
163 4glp_A Monocyte differentiatio 98.3 9.9E-07 3.4E-11 87.0 8.5 158 23-190 92-262 (310)
164 2p1m_B Transport inhibitor res 98.3 1.1E-07 3.8E-12 103.5 1.7 13 154-166 288-300 (594)
165 3a79_B TLR6, VLRB.59, TOLL-lik 98.3 1.4E-06 4.9E-11 93.8 10.4 159 23-189 332-507 (562)
166 1wwl_A Monocyte differentiatio 98.3 7.4E-07 2.5E-11 88.0 6.9 151 23-189 150-306 (312)
167 3o53_A Protein LRIM1, AGAP0063 98.3 2.9E-07 1E-11 91.1 3.7 147 23-187 121-270 (317)
168 3oja_A Leucine-rich immune mol 98.3 1.1E-06 3.9E-11 92.3 8.3 153 23-189 35-201 (487)
169 1xeu_A Internalin C; cellular 98.3 3.9E-06 1.4E-10 80.3 11.3 121 22-166 63-183 (263)
170 3g06_A SSPH2 (leucine-rich rep 98.3 3.2E-06 1.1E-10 91.0 11.8 50 23-81 62-111 (622)
171 1a9n_A U2A', U2A'; complex (nu 98.3 5.9E-07 2E-11 80.2 5.2 79 23-107 20-98 (176)
172 3e6j_A Variable lymphocyte rec 98.3 3.8E-06 1.3E-10 78.6 10.7 147 24-189 21-169 (229)
173 3j0a_A TOLL-like receptor 5; m 98.3 2.4E-06 8.3E-11 96.7 11.1 133 23-165 25-158 (844)
174 3e6j_A Variable lymphocyte rec 98.3 3.3E-06 1.1E-10 78.9 10.0 130 22-166 40-170 (229)
175 2z62_A TOLL-like receptor 4, v 98.3 2.4E-06 8.4E-11 82.6 9.4 135 23-171 29-164 (276)
176 4g8a_A TOLL-like receptor 4; l 98.2 2.5E-06 8.5E-11 93.6 10.1 133 44-188 442-576 (635)
177 4ay9_X Follicle-stimulating ho 98.2 4E-06 1.4E-10 84.2 10.7 161 23-189 31-212 (350)
178 2o6s_A Variable lymphocyte rec 98.2 7.4E-06 2.5E-10 75.3 11.6 130 23-166 29-159 (208)
179 1te4_A Conserved protein MTH18 98.2 1.3E-06 4.5E-11 73.5 5.6 117 211-351 15-131 (131)
180 3ogk_B Coronatine-insensitive 98.2 9.2E-07 3.1E-11 96.1 5.8 82 21-105 219-326 (592)
181 4ay9_X Follicle-stimulating ho 98.2 5.1E-06 1.7E-10 83.4 10.6 140 34-187 20-162 (350)
182 3ogk_B Coronatine-insensitive 98.2 4.2E-07 1.4E-11 98.8 2.9 36 154-190 487-524 (592)
183 2z7x_B TOLL-like receptor 1, v 98.2 5.8E-06 2E-10 88.2 11.5 153 22-188 276-453 (520)
184 3cvr_A Invasion plasmid antige 98.2 6.7E-06 2.3E-10 87.4 11.2 70 23-107 81-150 (571)
185 1wa5_C Importin alpha RE-expor 98.2 0.00011 3.8E-09 84.3 22.3 388 237-663 34-526 (960)
186 3j0a_A TOLL-like receptor 5; m 98.2 3.7E-06 1.3E-10 95.2 9.6 159 21-189 47-214 (844)
187 1jl5_A Outer protein YOPM; leu 98.1 7.9E-06 2.7E-10 85.0 11.1 56 44-107 150-205 (454)
188 4g8a_A TOLL-like receptor 4; l 98.1 4.8E-06 1.6E-10 91.3 9.5 126 48-187 53-181 (635)
189 3e4g_A ATP synthase subunit S, 98.1 1E-06 3.4E-11 76.9 2.9 39 130-169 115-153 (176)
190 2je0_A Acidic leucine-rich nuc 98.1 2.2E-06 7.7E-11 74.0 5.1 107 21-137 41-148 (149)
191 1ziw_A TOLL-like receptor 3; i 98.1 1.3E-05 4.5E-10 88.5 12.6 34 23-57 382-415 (680)
192 1wa5_C Importin alpha RE-expor 98.1 0.00051 1.7E-08 78.9 26.1 382 201-608 49-526 (960)
193 1ziw_A TOLL-like receptor 3; i 98.1 1.5E-05 5E-10 88.2 12.9 57 23-81 74-131 (680)
194 2v9t_B SLIT homolog 2 protein 98.1 1.3E-05 4.6E-10 74.2 10.3 138 34-188 22-161 (220)
195 3dad_A FH1/FH2 domain-containi 98.1 8.5E-05 2.9E-09 70.7 15.5 187 410-597 120-326 (339)
196 1ds9_A Outer arm dynein; leuci 98.1 2.9E-07 1E-11 84.1 -1.5 146 23-185 24-180 (198)
197 3a79_B TLR6, VLRB.59, TOLL-lik 98.1 1.8E-05 6.3E-10 85.1 12.3 156 23-189 303-483 (562)
198 2ca6_A RAN GTPase-activating p 98.1 2E-06 6.8E-11 87.8 4.5 84 23-108 33-133 (386)
199 3dad_A FH1/FH2 domain-containi 98.1 6.1E-05 2.1E-09 71.6 14.0 195 454-659 122-332 (339)
200 1a9n_A U2A', U2A'; complex (nu 98.1 9.4E-06 3.2E-10 72.3 8.2 133 44-191 16-152 (176)
201 2v70_A SLIT-2, SLIT homolog 2 98.0 3E-05 1E-09 71.8 11.8 147 25-189 14-163 (220)
202 2iw3_A Elongation factor 3A; a 98.0 0.00066 2.2E-08 75.5 22.9 299 286-611 19-328 (986)
203 2v9t_B SLIT homolog 2 protein 98.0 3.9E-05 1.3E-09 71.0 11.2 130 23-166 33-163 (220)
204 1jl5_A Outer protein YOPM; leu 97.9 3.5E-05 1.2E-09 80.1 11.3 72 23-107 154-225 (454)
205 2x1g_F Cadmus; transport prote 97.9 0.002 6.9E-08 74.1 26.7 329 253-608 204-616 (971)
206 2xot_A Amphoterin-induced prot 97.9 3.6E-05 1.2E-09 77.5 10.6 136 23-172 40-179 (361)
207 2xot_A Amphoterin-induced prot 97.9 2E-05 6.8E-10 79.4 8.3 147 25-189 21-173 (361)
208 4hat_C Exportin-1; heat repeat 97.9 0.0031 1.1E-07 71.8 26.4 339 249-610 206-621 (1023)
209 2x19_B Importin-13; nuclear tr 97.8 0.0026 8.8E-08 73.2 25.6 343 291-662 459-846 (963)
210 2x1g_F Cadmus; transport prote 97.8 0.0017 5.8E-08 74.8 23.8 390 237-661 38-534 (971)
211 1z7x_W Ribonuclease inhibitor; 97.8 1E-06 3.5E-11 92.5 -2.9 83 23-108 200-295 (461)
212 3cvr_A Invasion plasmid antige 97.8 4.9E-05 1.7E-09 80.8 10.0 131 23-189 60-190 (571)
213 2ca6_A RAN GTPase-activating p 97.8 2.5E-06 8.4E-11 87.1 -0.1 83 21-107 93-197 (386)
214 3m1i_C Exportin-1; heat repeat 97.8 0.015 5.1E-07 67.4 31.4 358 236-611 136-573 (1049)
215 2v70_A SLIT-2, SLIT homolog 2 97.8 0.00011 3.9E-09 67.9 10.9 130 23-166 33-164 (220)
216 4b8c_D Glucose-repressible alc 97.8 3.5E-05 1.2E-09 85.1 7.8 111 64-190 217-327 (727)
217 1dce_A Protein (RAB geranylger 97.7 5.2E-05 1.8E-09 80.9 8.7 122 47-185 441-566 (567)
218 1dce_A Protein (RAB geranylger 97.7 5.6E-05 1.9E-09 80.7 8.8 102 71-190 441-544 (567)
219 2ra8_A Uncharacterized protein 97.7 2.5E-05 8.5E-10 78.0 5.6 154 23-189 140-317 (362)
220 2o6r_A Variable lymphocyte rec 97.7 0.00021 7.1E-09 63.5 10.5 59 46-107 27-86 (177)
221 1z7x_W Ribonuclease inhibitor; 97.7 3.8E-06 1.3E-10 88.1 -1.6 83 23-108 86-181 (461)
222 1w8a_A SLIT protein; signaling 97.7 0.00019 6.3E-09 64.8 9.7 35 153-188 100-135 (192)
223 4b8c_D Glucose-repressible alc 97.6 5E-05 1.7E-09 83.8 6.8 115 43-173 220-334 (727)
224 3m1i_C Exportin-1; heat repeat 97.6 0.015 5E-07 67.4 27.8 350 243-609 199-620 (1049)
225 4hat_C Exportin-1; heat repeat 97.6 0.0086 2.9E-07 68.2 24.9 358 237-611 137-573 (1023)
226 1ds9_A Outer arm dynein; leuci 97.6 3.4E-06 1.2E-10 76.9 -2.9 124 48-189 24-150 (198)
227 2x19_B Importin-13; nuclear tr 97.6 0.019 6.5E-07 66.0 27.4 350 239-608 242-650 (963)
228 2o6r_A Variable lymphocyte rec 97.6 0.00017 5.9E-09 64.1 8.0 105 23-139 29-134 (177)
229 2wfh_A SLIT homolog 2 protein 97.5 0.0003 1E-08 63.4 8.8 58 128-188 77-135 (193)
230 1w8a_A SLIT protein; signaling 97.5 0.00039 1.3E-08 62.6 9.5 125 25-166 11-137 (192)
231 4ffb_C Protein STU2; tubulin f 97.4 0.0037 1.3E-07 60.0 16.2 188 455-662 14-212 (278)
232 3ibv_A Exportin-T; karyopherin 97.4 0.0031 1E-07 71.7 17.0 307 292-611 204-570 (980)
233 3goz_A Leucine-rich repeat-con 97.4 4.1E-05 1.4E-09 77.2 1.4 83 23-108 23-120 (362)
234 3goz_A Leucine-rich repeat-con 97.3 4.7E-05 1.6E-09 76.7 1.2 84 22-108 80-178 (362)
235 2wfh_A SLIT homolog 2 protein 97.3 0.0013 4.4E-08 59.2 9.9 125 25-166 13-137 (193)
236 2of3_A ZYG-9; multifunctional 97.2 0.0036 1.2E-07 58.3 12.4 181 413-610 51-239 (266)
237 1lrv_A LRV, leucine-rich repea 97.2 8.3E-05 2.8E-09 69.0 1.3 185 288-602 57-241 (244)
238 1lrv_A LRV, leucine-rich repea 97.2 0.00011 3.7E-09 68.2 1.8 184 247-560 59-242 (244)
239 4ffb_C Protein STU2; tubulin f 97.1 0.0085 2.9E-07 57.4 14.7 192 238-438 10-213 (278)
240 3ibv_A Exportin-T; karyopherin 97.1 0.0047 1.6E-07 70.2 14.7 303 249-566 204-568 (980)
241 2ra8_A Uncharacterized protein 97.1 0.00021 7.1E-09 71.3 3.0 154 23-188 108-288 (362)
242 3oc3_A Helicase MOT1, MOT1; re 97.0 0.0066 2.3E-07 61.4 13.1 243 282-560 175-432 (800)
243 2fv2_A RCD1 required for cell 96.9 0.025 8.4E-07 51.3 13.9 186 421-609 14-226 (268)
244 3gjx_A Exportin-1; transport, 96.8 0.13 4.5E-06 58.5 23.1 356 238-612 150-600 (1073)
245 1upk_A MO25 protein; transfera 96.8 0.056 1.9E-06 51.4 16.6 201 319-522 73-283 (341)
246 3oc3_A Helicase MOT1, MOT1; re 96.8 0.0013 4.3E-08 66.4 5.4 244 239-517 175-431 (800)
247 2of3_A ZYG-9; multifunctional 96.8 0.024 8.2E-07 52.8 13.7 178 327-522 49-236 (266)
248 2r9u_A Variable lymphocyte rec 96.8 0.0024 8.2E-08 56.3 6.8 101 25-140 15-116 (174)
249 3sb4_A Hypothetical leucine ri 96.7 0.0044 1.5E-07 61.2 9.3 32 46-79 100-132 (329)
250 1upk_A MO25 protein; transfera 96.7 0.12 4E-06 49.3 18.2 203 444-660 72-281 (341)
251 2fv2_A RCD1 required for cell 96.7 0.061 2.1E-06 48.8 15.4 191 463-660 14-222 (268)
252 2ifg_A High affinity nerve gro 96.6 0.0038 1.3E-07 62.2 8.2 100 27-139 13-113 (347)
253 3sb4_A Hypothetical leucine ri 96.6 0.0079 2.7E-07 59.3 10.2 78 96-186 225-304 (329)
254 3c2g_A SYS-1 protein; beta-cat 96.6 0.26 9E-06 46.5 18.9 171 348-520 266-471 (619)
255 2r9u_A Variable lymphocyte rec 96.5 0.0069 2.4E-07 53.3 8.2 102 50-166 15-116 (174)
256 3g39_A Variable lymphocyte rec 96.5 0.0046 1.6E-07 54.2 6.8 102 23-139 10-112 (170)
257 3gjx_A Exportin-1; transport, 96.5 0.25 8.4E-06 56.3 22.2 297 249-566 218-597 (1073)
258 3g39_A Variable lymphocyte rec 96.4 0.0095 3.2E-07 52.2 8.2 101 50-165 12-112 (170)
259 3u0r_A Apoptosis inhibitor 5; 96.4 0.12 4E-06 51.7 16.3 255 328-610 33-301 (507)
260 2ifg_A High affinity nerve gro 96.4 0.006 2.1E-07 60.7 7.6 83 53-146 14-96 (347)
261 4fdw_A Leucine rich hypothetic 96.2 0.047 1.6E-06 55.2 13.1 56 127-188 298-354 (401)
262 3l9t_A Putative uncharacterize 96.1 0.18 6E-06 45.5 14.7 144 283-448 73-218 (240)
263 4fdw_A Leucine rich hypothetic 96.1 0.042 1.4E-06 55.6 12.2 35 151-187 296-331 (401)
264 3un9_A NLR family member X1; l 95.8 0.00031 1.1E-08 70.6 -4.9 158 23-189 73-249 (372)
265 3l9t_A Putative uncharacterize 95.8 0.064 2.2E-06 48.3 10.4 148 407-577 70-219 (240)
266 2f31_A Diaphanous protein homo 95.0 0.23 7.8E-06 45.7 11.9 161 483-652 35-218 (233)
267 3u0r_A Apoptosis inhibitor 5; 95.0 0.14 4.7E-06 51.2 10.6 122 506-661 41-162 (507)
268 1lsh_A Lipovitellin (LV-1N, LV 94.6 1.1 3.9E-05 51.3 18.6 172 368-568 393-580 (1056)
269 3gs3_A Symplekin, LD45768P; he 94.6 2.8 9.7E-05 38.7 20.1 101 240-351 17-117 (257)
270 1lsh_A Lipovitellin (LV-1N, LV 94.5 2.3 7.8E-05 48.8 20.8 166 326-524 393-578 (1056)
271 3ebb_A Phospholipase A2-activa 94.3 1.4 4.7E-05 42.1 15.7 123 336-461 160-287 (304)
272 3un9_A NLR family member X1; l 94.3 0.0035 1.2E-07 62.9 -2.4 138 45-190 70-222 (372)
273 3a6p_A Exportin-5; exportin-5, 94.1 5.8 0.0002 46.3 23.5 300 240-565 13-381 (1204)
274 3eg5_B Protein diaphanous homo 94.0 0.66 2.3E-05 46.1 13.2 161 483-652 101-284 (383)
275 3c2g_A SYS-1 protein; beta-cat 93.6 0.55 1.9E-05 44.4 10.9 314 300-661 261-617 (619)
276 3o2t_A Symplekin; heat repeat, 92.8 5.7 0.0002 39.0 17.4 88 253-351 40-127 (386)
277 2f31_A Diaphanous protein homo 92.6 4.6 0.00016 36.8 15.8 123 274-398 37-182 (233)
278 2bnx_A Diaphanous protein homo 92.2 2 6.7E-05 42.8 13.5 161 483-652 39-222 (386)
279 3eg5_B Protein diaphanous homo 92.1 5.4 0.00018 39.5 16.6 156 241-399 69-249 (383)
280 3a6p_A Exportin-5; exportin-5, 91.9 4.2 0.00014 47.5 17.9 284 296-608 27-381 (1204)
281 3ebb_A Phospholipase A2-activa 91.6 1.3 4.5E-05 42.2 11.0 152 240-397 105-264 (304)
282 3rw6_A Nuclear RNA export fact 90.2 0.1 3.4E-06 49.0 1.9 36 70-106 169-205 (267)
283 2bnx_A Diaphanous protein homo 88.4 19 0.00066 35.6 16.9 124 274-399 41-187 (386)
284 1vdy_A Hypothetical protein (R 87.9 1.6 5.4E-05 35.8 7.1 77 579-667 50-135 (140)
285 3ldz_A STAM-1, signal transduc 87.4 1.4 4.7E-05 36.5 6.7 74 536-609 43-116 (140)
286 1io0_A Tropomodulin; LRR prote 86.7 0.11 3.7E-06 46.0 -0.5 63 45-108 34-104 (185)
287 1io0_A Tropomodulin; LRR prote 86.0 0.11 3.7E-06 46.0 -0.9 83 21-105 35-129 (185)
288 3qml_C Protein SLS1, nucleotid 85.1 2.6 8.8E-05 39.5 7.8 134 466-608 44-190 (315)
289 3gs3_A Symplekin, LD45768P; he 84.6 19 0.00064 33.2 13.4 138 508-661 30-172 (257)
290 3qml_C Protein SLS1, nucleotid 83.9 12 0.0004 35.1 11.6 150 408-564 22-189 (315)
291 3o2t_A Symplekin; heat repeat, 83.0 6.7 0.00023 38.6 10.2 140 509-661 41-182 (386)
292 3g2s_A C-terminal fragment of 82.6 2.4 8.3E-05 35.4 6.0 73 536-608 49-127 (149)
293 1x5b_A Signal transducing adap 81.0 2.4 8.3E-05 36.1 5.6 73 536-608 53-126 (163)
294 3fga_B Serine/threonine-protei 78.1 51 0.0017 32.5 14.5 238 314-565 119-367 (403)
295 1mhq_A ADP-ribosylation factor 77.9 3.2 0.00011 34.6 5.3 73 536-608 39-117 (148)
296 3rw6_A Nuclear RNA export fact 77.2 2 6.7E-05 40.2 4.2 91 44-138 167-260 (267)
297 4fs7_A Uncharacterized protein 77.1 5.2 0.00018 40.0 7.7 10 177-186 364-373 (394)
298 1x5b_A Signal transducing adap 75.4 3.6 0.00012 35.0 5.0 74 238-311 52-125 (163)
299 3ldz_A STAM-1, signal transduc 74.7 2.6 9E-05 34.8 3.9 73 238-311 42-114 (140)
300 1juq_A ADP-ribosylation factor 74.5 21 0.0007 30.5 9.6 70 579-660 51-126 (171)
301 1vsy_5 Proteasome activator BL 74.0 16 0.00055 41.2 11.2 187 325-522 134-365 (997)
302 1mhq_A ADP-ribosylation factor 73.2 4.4 0.00015 33.8 4.9 73 238-311 38-116 (148)
303 4fs7_A Uncharacterized protein 72.6 16 0.00056 36.2 10.1 11 153-163 364-374 (394)
304 2npp_B PP2A, B subunit, serine 72.5 59 0.002 32.6 13.6 226 240-483 164-403 (449)
305 3g2s_A C-terminal fragment of 71.7 5.3 0.00018 33.3 5.0 73 238-311 48-126 (149)
306 2npp_B PP2A, B subunit, serine 71.6 87 0.003 31.4 16.9 238 314-565 152-400 (449)
307 1juq_A ADP-ribosylation factor 71.2 4.2 0.00014 34.9 4.4 73 536-608 51-129 (171)
308 3zyq_A Hepatocyte growth facto 68.4 5.6 0.00019 36.0 4.9 74 536-609 46-120 (226)
309 4gt6_A Cell surface protein; l 65.5 8.2 0.00028 38.5 6.0 8 71-78 311-318 (394)
310 1vsy_5 Proteasome activator BL 65.3 31 0.001 39.0 11.0 221 368-608 135-366 (997)
311 3ut4_A CTHE_2751, putative unc 64.2 29 0.00098 28.0 7.6 95 536-663 32-131 (134)
312 3zyq_A Hepatocyte growth facto 64.0 4.6 0.00016 36.6 3.4 74 238-311 45-118 (226)
313 4gt6_A Cell surface protein; l 60.9 23 0.00078 35.1 8.3 34 152-187 331-365 (394)
314 1dvp_A HRS, hepatocyte growth 57.5 6.7 0.00023 35.3 3.3 74 238-311 42-115 (220)
315 1elk_A Target of MYB1; superhe 56.9 18 0.00063 30.3 5.7 73 536-608 54-131 (157)
316 3s4w_B Protein FACD2, fanconi 54.6 3.1E+02 0.01 31.9 17.4 171 421-607 323-507 (1323)
317 1vdy_A Hypothetical protein (R 54.0 20 0.00067 29.4 5.1 73 536-608 50-131 (140)
318 4h09_A Hypothetical leucine ri 53.9 11 0.00038 37.1 4.6 10 45-54 238-247 (379)
319 1dvp_A HRS, hepatocyte growth 53.0 19 0.00065 32.3 5.5 73 537-609 44-117 (220)
320 2jak_A Serine/threonine-protei 53.0 87 0.003 30.7 10.4 194 315-516 165-361 (392)
321 3s4w_B Protein FACD2, fanconi 51.7 1.3E+02 0.0043 35.0 12.8 171 337-522 323-507 (1323)
322 3fga_B Serine/threonine-protei 50.8 1.9E+02 0.0066 28.4 15.8 231 407-663 128-367 (403)
323 2b6c_A Hypothetical protein EF 50.2 1.4E+02 0.0047 26.6 11.8 139 411-576 58-199 (220)
324 4h09_A Hypothetical leucine ri 49.7 10 0.00036 37.4 3.6 32 153-186 308-340 (379)
325 1vsy_4 Proteasome activator BL 49.4 2.9E+02 0.01 30.1 17.5 110 368-479 340-455 (799)
326 3jxy_A Alkylpurine DNA glycosy 44.7 1.6E+02 0.0055 26.3 10.5 139 412-577 65-207 (232)
327 1elk_A Target of MYB1; superhe 43.9 27 0.00092 29.3 4.6 74 238-311 53-130 (157)
328 3gae_A Protein DOA1; UFD3, CDC 41.8 76 0.0026 29.1 7.7 102 334-437 100-217 (253)
329 3pst_A Protein DOA1; protein d 40.1 44 0.0015 33.1 6.1 103 333-439 271-391 (425)
330 3vld_A DNA mismatch repair pro 40.1 3.1E+02 0.01 27.7 14.4 142 240-396 75-225 (500)
331 2jak_A Serine/threonine-protei 39.7 2.1E+02 0.007 28.1 10.7 184 407-602 173-362 (392)
332 3pst_A Protein DOA1; protein d 39.3 2.2E+02 0.0075 28.2 10.9 134 466-610 242-392 (425)
333 1w9c_A CRM1 protein, exportin 38.3 2.6E+02 0.0091 26.4 15.5 138 466-611 45-200 (321)
334 3l3f_X Protein DOA1, DOA1/UFD3 36.3 38 0.0013 32.8 4.9 102 333-438 208-327 (362)
335 1inz_A EPS15-interacting porte 33.9 2E+02 0.0068 23.7 8.5 80 580-670 61-148 (148)
336 3gae_A Protein DOA1; UFD3, CDC 32.4 49 0.0017 30.3 4.9 132 254-398 70-219 (253)
337 3rru_A TOM1L1 protein; structu 28.2 50 0.0017 27.5 3.7 72 537-608 55-131 (152)
338 4atg_A TAF6; transcription, TF 28.0 1.7E+02 0.0058 25.4 7.2 138 368-520 13-160 (196)
339 2xpp_A IWS1, ECU08_0440; trans 26.5 1.4E+02 0.0048 24.5 6.0 77 442-522 53-136 (145)
340 3vld_A DNA mismatch repair pro 26.0 5.2E+02 0.018 26.0 17.6 189 240-440 118-320 (500)
341 2xpp_A IWS1, ECU08_0440; trans 21.2 2.8E+02 0.0096 22.6 6.8 78 483-564 52-136 (145)
342 3l3f_X Protein DOA1, DOA1/UFD3 20.9 94 0.0032 30.1 4.6 103 460-565 209-327 (362)
343 3nfq_A Transcription factor IW 20.1 2.7E+02 0.0093 23.4 6.6 78 441-522 67-151 (170)
No 1
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=9.7e-51 Score=433.18 Aligned_cols=422 Identities=46% Similarity=0.791 Sum_probs=389.1
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562 239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK 318 (670)
Q Consensus 239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 318 (670)
.++.+++.++++|++.|..|+..++++++.+++++++.+++.|++|.|+++|++.+++++|..|+|+|+|++.++++.++
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~ 137 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 48999999999999999999999999999887888999999999999999998776589999999999999999999999
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccC----ChhHHHHHHHHHHhh
Q 037562 319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENA----NLSMLRTATWTLFNF 394 (670)
Q Consensus 319 ~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~----~~~~~~~a~~~L~~l 394 (670)
.+++.|++|.|+.+|+++++++++.|+|+|+|++.+.+..+..+.+.|++++++.++.... ...+++.++|++.++
T Consensus 138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl 217 (510)
T 3ul1_B 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL 217 (510)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999995432 235788999999999
Q ss_pred hcCC-CCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHH
Q 037562 395 CRGK-PQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRT 473 (670)
Q Consensus 395 ~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~ 473 (670)
+.+. +........+++|.|+.++.+++++++..++++|++++...++..+.+.+.|+++.|+.++.+++..++..|+++
T Consensus 218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~a 297 (510)
T 3ul1_B 218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA 297 (510)
T ss_dssp HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHH
Confidence 9886 555566678999999999999999999999999999999888888889999999999999999999999999999
Q ss_pred HHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHH
Q 037562 474 IRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKK 553 (670)
Q Consensus 474 L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 553 (670)
|+|++.+++.....+++.|+++.|+.++.++ ++.+++.|+|+|+|++.+++.....+.+.|+++.|+.++.+++.+++.
T Consensus 298 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~ 376 (510)
T 3ul1_B 298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK 376 (510)
T ss_dssp HHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred HHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHH
Confidence 9999999988888899999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhc
Q 037562 554 EAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAE 633 (670)
Q Consensus 554 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g 633 (670)
+|+++|.|++..+++++..++++.|+++.|++++++.|++++..++++|.++++.+++. ...+.+...|+++|
T Consensus 377 ~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~-------~~~~~~~~~iee~g 449 (510)
T 3ul1_B 377 EAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL-------GETEKLSIMIEECG 449 (510)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTT-------TCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhc-------cchHHHHHHHHHcC
Confidence 99999999999889999999999999999999999999999999999999999887653 24567889999999
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHHhcCCccccC
Q 037562 634 GLEKIENLQSHDDNGISEKAVEILETYWSSRVIGR 668 (670)
Q Consensus 634 ~~~~l~~L~~~~~~~v~~~a~~~l~~~~~~~~~~~ 668 (670)
|++.|+.|+.|++++|+++|.++|++||++|+.++
T Consensus 450 gl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~ 484 (510)
T 3ul1_B 450 GLDKIEALQRHENESVYKASLNLIEKYFSVEEEED 484 (510)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHCC------
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccc
Confidence 99999999999999999999999999998776554
No 2
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=1.9e-49 Score=425.93 Aligned_cols=423 Identities=45% Similarity=0.771 Sum_probs=389.3
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT 317 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 317 (670)
..++.+++.+.++|++.+..|+..++++.+.++.+.++.+++.|++|.|+++|...+++.++..|+++|++++.++++.+
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 45899999999999999999999999998887788899999999999999999876668999999999999999999999
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccC----ChhHHHHHHHHHHh
Q 037562 318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENA----NLSMLRTATWTLFN 393 (670)
Q Consensus 318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~----~~~~~~~a~~~L~~ 393 (670)
..+++.|++|.|+.++.++++.+++.|+|+|+|++.+++..+..+.+.|++++++.++.... ...+++.++|++.+
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999995432 23578899999999
Q ss_pred hhcCC-CCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHH
Q 037562 394 FCRGK-PQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALR 472 (670)
Q Consensus 394 l~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~ 472 (670)
++.+. +........+++|.|+.++.+++++++..++++|++++...++..+.+.+.|+++.|+.+|.+++..++..|++
T Consensus 236 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~ 315 (529)
T 3tpo_A 236 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 315 (529)
T ss_dssp HHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred HHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHH
Confidence 99887 55566667899999999999999999999999999999998888888999999999999999999999999999
Q ss_pred HHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHH
Q 037562 473 TIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTK 552 (670)
Q Consensus 473 ~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 552 (670)
+|+|++.+++.....+++.|+++.|+.++.++ ++.++..|+|+|+|++.+++.....+.+.|+++.|+.++.+++.+++
T Consensus 316 aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~ 394 (529)
T 3tpo_A 316 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQ 394 (529)
T ss_dssp HHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHH
Confidence 99999999988888899999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHh
Q 037562 553 KEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEA 632 (670)
Q Consensus 553 ~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (670)
..|+++|+|++..+++++..++++.|++++|++++++.|++++..++++|.+++..++... ..+.+...|+++
T Consensus 395 ~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~-------~~~~~~~~iee~ 467 (529)
T 3tpo_A 395 KAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLG-------ETEKLSIMIEEC 467 (529)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTT-------CHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhcc-------ChHHHHHHHHHC
Confidence 9999999999998889999999999999999999999999999999999999998876542 456788999999
Q ss_pred chHHHHHHhhcCCCHHHHHHHHHHHHHhcCCccccC
Q 037562 633 EGLEKIENLQSHDDNGISEKAVEILETYWSSRVIGR 668 (670)
Q Consensus 633 g~~~~l~~L~~~~~~~v~~~a~~~l~~~~~~~~~~~ 668 (670)
||++.|+.|+.|++++|+++|..+|++||++|+.++
T Consensus 468 ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~ 503 (529)
T 3tpo_A 468 GGLDKIEALQRHENESVYKASLNLIEKYFSVEEEED 503 (529)
T ss_dssp TCHHHHTGGGGCSSHHHHHHHHHHHHHHC-------
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccccc
Confidence 999999999999999999999999999998765543
No 3
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=2.1e-44 Score=388.79 Aligned_cols=429 Identities=75% Similarity=1.156 Sum_probs=392.1
Q ss_pred hccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 037562 237 LEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN 316 (670)
Q Consensus 237 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~ 316 (670)
...++.+++.+.+++++++..|+++|+++++....+....+++.|+++.|+++|.+++++.++..|+++|++++.++++.
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 35689999999999999999999999999887645778999999999999999998765899999999999999988999
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhc
Q 037562 317 TKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCR 396 (670)
Q Consensus 317 ~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~ 396 (670)
+..+++.|+++.|+.+|.++++.++..|+++|++++.+.+..+..+.+.|++++|+.++..+.++.+++.++|+|.+++.
T Consensus 153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~ 232 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCR 232 (528)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999988888899999999999999999777889999999999999999
Q ss_pred CCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHH
Q 037562 397 GKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN 476 (670)
Q Consensus 397 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 476 (670)
..+........+++|.|+.++.++++.++..++++|++++...+...+.+.+.|+++.++.+|.++++.++..|+++|++
T Consensus 233 ~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~n 312 (528)
T 4b8j_A 233 GKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGN 312 (528)
T ss_dssp SSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHH
Confidence 88777778889999999999999999999999999999999888888889999999999999999999999999999999
Q ss_pred hhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHH
Q 037562 477 IVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAA 556 (670)
Q Consensus 477 l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 556 (670)
++.+.+.....+++.|+++.|+.++.++.++.++..|+|+|+|++.+++.....+++.|+++.|+.++.+++++++..|+
T Consensus 313 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~ 392 (528)
T 4b8j_A 313 IVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAA 392 (528)
T ss_dssp HTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 99988888888899999999999998765789999999999999998888899999999999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHH
Q 037562 557 WAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLE 636 (670)
Q Consensus 557 ~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 636 (670)
++|++++..++++...++.+.|+++.|+.++++.+++++..++++|.+++..++....... ...+.+...+.+.|+++
T Consensus 393 ~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~ 470 (528)
T 4b8j_A 393 WAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAA--GDVNVFSQMIDEAEGLE 470 (528)
T ss_dssp HHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHT--CSCCHHHHHHHHTTHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccc--ccccHHHHHHHHCCcHH
Confidence 9999999987889999999999999999999999999999999999999988765332111 13556899999999999
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhcCCcccc
Q 037562 637 KIENLQSHDDNGISEKAVEILETYWSSRVIG 667 (670)
Q Consensus 637 ~l~~L~~~~~~~v~~~a~~~l~~~~~~~~~~ 667 (670)
.|..+++|.+++++++|.+++++||+.++.+
T Consensus 471 ~l~~L~~~~~~~v~~~a~~il~~~~~~e~~~ 501 (528)
T 4b8j_A 471 KIENLQSHDNNEIYEKAVKILEAYWMDEEDD 501 (528)
T ss_dssp HHHHGGGCSSHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHCCCcccc
Confidence 9999999999999999999999999876543
No 4
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=2e-42 Score=373.07 Aligned_cols=426 Identities=54% Similarity=0.826 Sum_probs=387.2
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT 317 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 317 (670)
+.++.+++.+++++++++..|++.|.++++....+....+++.|+++.|+++|.+++++.++..|+++|++++.++++.+
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 56899999999999999999999999998765456678899999999999999987338999999999999999888999
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562 318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG 397 (670)
Q Consensus 318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 397 (670)
..+++.|+++.|+.+|.++++.++..|+++|++++.+.+..+..+...|+++.|+.++ .+.++.++..++|+|.+++..
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~~~ 245 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLCRG 245 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999998888899999999999999999 558889999999999999988
Q ss_pred C-CCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHH
Q 037562 398 K-PQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN 476 (670)
Q Consensus 398 ~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 476 (670)
. +........+++|.|+.++.++++.++..++++|++++...+...+.+.+.|+++.++.++.++++.++..|+++|++
T Consensus 246 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~ 325 (530)
T 1wa5_B 246 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 325 (530)
T ss_dssp SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHH
Confidence 7 666777778999999999999999999999999999998888778888899999999999999999999999999999
Q ss_pred hhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHH
Q 037562 477 IVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAA 556 (670)
Q Consensus 477 l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 556 (670)
++.+++.....+++.|+++.|+.++.++ ++.++..|+|+|++++.+++...+.+++.|+++.|+.++.+++++++..|+
T Consensus 326 l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~ 404 (530)
T 1wa5_B 326 IVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEAC 404 (530)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 9998888888888999999999999999 999999999999999998888888899999999999999999999999999
Q ss_pred HHHHHhcCCCCH--HHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhch
Q 037562 557 WAISNATKFGTH--EQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEG 634 (670)
Q Consensus 557 ~aL~~l~~~~~~--~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 634 (670)
++|++++..+.+ +....+.+.|+++.|+.++.+.++.++..++++|.+++...+....... ...+.+...+.+.|+
T Consensus 405 ~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~--~~~~~~~~~l~~~g~ 482 (530)
T 1wa5_B 405 WAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARG--LNINENADFIEKAGG 482 (530)
T ss_dssp HHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHT--CSSCHHHHHHHHTTH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhccc--ccccHHHHHHHHcCc
Confidence 999999987666 7888999999999999999999999999999999999987765321000 123568899999999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHhcCCcccc
Q 037562 635 LEKIENLQSHDDNGISEKAVEILETYWSSRVIG 667 (670)
Q Consensus 635 ~~~l~~L~~~~~~~v~~~a~~~l~~~~~~~~~~ 667 (670)
++.|..|+.++++++++.|..+|++||++++.+
T Consensus 483 ~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~~ 515 (530)
T 1wa5_B 483 MEKIFNCQQNENDKIYEKAYKIIETYFGEEEDA 515 (530)
T ss_dssp HHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC--
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence 999999999999999999999999999877653
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=2.4e-41 Score=358.18 Aligned_cols=425 Identities=55% Similarity=0.872 Sum_probs=381.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHc-CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQS-GVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK 318 (670)
Q Consensus 240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 318 (670)
++.+++.++++++.++..|+..|+++++....+....+++. |+++.|++++++++++.++..|+++|.+++.++++...
T Consensus 22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 101 (450)
T 2jdq_A 22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR 101 (450)
T ss_dssp CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 78999999999999999999999998764335566778887 99999999999983389999999999999998888888
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC
Q 037562 319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK 398 (670)
Q Consensus 319 ~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~ 398 (670)
.+++.|+++.|+.+++++++.++..|+++|++++.+.+..+..+.+.|+++.++.++.++.+..++..++++|.+++...
T Consensus 102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 181 (450)
T 2jdq_A 102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK 181 (450)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 89999999999999999999999999999999999888889999999999999999965678999999999999999876
Q ss_pred -CCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHh
Q 037562 399 -PQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477 (670)
Q Consensus 399 -~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 477 (670)
+........+++|.++.++.++++.++..++++|++++...+.....+.+.|+++.++.++.++++.++..|+++|+++
T Consensus 182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l 261 (450)
T 2jdq_A 182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261 (450)
T ss_dssp SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence 5555556689999999999999999999999999999988777777788899999999999999999999999999999
Q ss_pred hcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHH
Q 037562 478 VKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAW 557 (670)
Q Consensus 478 ~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~ 557 (670)
+.+.+...+.+++.|+++.|+.++.++ ++.++..|+++|++++.+++...+.+++.++++.|+.++.+++++++..|++
T Consensus 262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~ 340 (450)
T 2jdq_A 262 VTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAW 340 (450)
T ss_dssp TTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred hhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 998887777788899999999999998 9999999999999999888888888999999999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHH
Q 037562 558 AISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEK 637 (670)
Q Consensus 558 aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 637 (670)
+|++++..++++..+.+++.|+++.|++++++++++++..++++|.+++..++....... ...+.+...+.+.||++.
T Consensus 341 ~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~--~~~~~~~~~l~~~g~~~~ 418 (450)
T 2jdq_A 341 AITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNG--TGINPYCALIEEAYGLDK 418 (450)
T ss_dssp HHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSC--SCCCHHHHHHHHHHCHHH
T ss_pred HHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccc--cchhHHHHHHHHcCcHHH
Confidence 999999876778888889999999999999999999999999999999987665321000 123568899999999999
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHhcCCcccc
Q 037562 638 IENLQSHDDNGISEKAVEILETYWSSRVIG 667 (670)
Q Consensus 638 l~~L~~~~~~~v~~~a~~~l~~~~~~~~~~ 667 (670)
|..|+++++.++++.|..+|++||++|+.+
T Consensus 419 l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~ 448 (450)
T 2jdq_A 419 IEFLQSHENQEIYQKAFDLIEHYFGTEDED 448 (450)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHCCC---
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence 999999999999999999999999877654
No 6
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=6.3e-38 Score=334.26 Aligned_cols=395 Identities=24% Similarity=0.370 Sum_probs=339.5
Q ss_pred hhHHHHhhcchhhhhhccccCCCccccchhhhhh--ccHHHHHHHhc-CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHc
Q 037562 204 TIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKL--EILPAMVDGVW-SDDNSLQLEATTLFINLLSFDRSPPIDEVIQS 280 (670)
Q Consensus 204 ~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 280 (670)
+.|.-+...++.++.. +.+ +|++..+ |.+|.|+++|+ ++++.+|..|+|+|.++++++ .+....+++.
T Consensus 72 ~~q~~a~~~~rklls~-------e~~-ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~ 142 (510)
T 3ul1_B 72 ESQLQATQAARKLLSR-------EKQ-PPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDG 142 (510)
T ss_dssp HHHHHHHHHHHHHHTC-------SSC-CCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcC-------CCC-chHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHC
Confidence 3444555555555543 333 3566655 67999999997 556899999999999999875 6778889999
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCC
Q 037562 281 GVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPS-----VDVRKQTVWALGNVAGDS 355 (670)
Q Consensus 281 g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~-----~~v~~~a~~~L~~l~~~~ 355 (670)
|++|.|+++|.+++ +++++.|+++|++++.+++..++.+.+.|+++.++.++..++ ..+...+++++.+++.+.
T Consensus 143 GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~ 221 (510)
T 3ul1_B 143 GAIPAFISLLASPH-AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 221 (510)
T ss_dssp THHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCC
T ss_pred CCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcc
Confidence 99999999999999 899999999999999988999999999999999999998754 456789999999999766
Q ss_pred chhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCC-hhhhhhhHHHHHHhhccCChhHHHHHHHHHHH
Q 037562 356 PRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPP-FNQVRPALPVLAQLIRSNDEEVLTDACWALSY 434 (670)
Q Consensus 356 ~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~ 434 (670)
..........++++.|+.++ .+.+++++..++|+|++++....... .....|+++.|+.++.+++..++..+++++++
T Consensus 222 ~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~n 300 (510)
T 3ul1_B 222 NPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN 300 (510)
T ss_dssp SSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHhHHHHHHHHH-hcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHH
Confidence 54444444557789999998 77889999999999999998763332 23347899999999999999999999999999
Q ss_pred hccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHH
Q 037562 435 LSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVS 514 (670)
Q Consensus 435 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~ 514 (670)
++..++.....+.+.|+++.++.++.+++..++..|+++|+|++.+++.....+++.|+++.|+.++.++ +..++++|+
T Consensus 301 l~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa 379 (510)
T 3ul1_B 301 IVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAA 379 (510)
T ss_dssp HTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHH
T ss_pred hhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHH
Confidence 9999888888999999999999999999999999999999999999988889899999999999999999 999999999
Q ss_pred HHHHHhhc-CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCC----C-CHHHHHHHHHcCCcHHHHhhcc
Q 037562 515 WIISNITC-GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKF----G-THEQIKHLVREGCVKPLCDLLL 588 (670)
Q Consensus 515 ~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~----~-~~~~~~~l~~~~~i~~L~~ll~ 588 (670)
|+|+|++. ++++++..+++.|+++.|+++|.+.|++++..++++|.++... + .......+.+.|+++.|..+..
T Consensus 380 ~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~ 459 (510)
T 3ul1_B 380 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR 459 (510)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGG
T ss_pred HHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHc
Confidence 99999987 5788889999999999999999999999999999999999752 1 2334455668999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhhh
Q 037562 589 CADPKIVTVCLEGLENILKVGV 610 (670)
Q Consensus 589 ~~~~~v~~~a~~~l~~l~~~~~ 610 (670)
+++.++...|..+|.++|..++
T Consensus 460 ~~n~~i~~~A~~iie~yf~~~~ 481 (510)
T 3ul1_B 460 HENESVYKASLNLIEKYFSVEE 481 (510)
T ss_dssp CSSHHHHHHHHHHHHHHCC---
T ss_pred CCCHHHHHHHHHHHHHHCCCcc
Confidence 9999999999999999986543
No 7
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=3.3e-37 Score=330.86 Aligned_cols=375 Identities=24% Similarity=0.390 Sum_probs=329.5
Q ss_pred hhhhhh--ccHHHHHHHhc-CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 037562 232 NLQSKL--EILPAMVDGVW-SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTN 308 (670)
Q Consensus 232 ~~~~~~--~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~ 308 (670)
|++..+ |.+|.|++.|. ++++.++..|+|+|.++++++ .+....+++.|++|.|+.++.+++ +++++.|+++|++
T Consensus 111 ~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~n 188 (529)
T 3tpo_A 111 PIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGN 188 (529)
T ss_dssp CHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHH
T ss_pred hHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHH
Confidence 454444 77999999997 566899999999999999875 566788999999999999999999 8999999999999
Q ss_pred HcCCChhhHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhH
Q 037562 309 IASGTSENTKVVIDHGAVPIFVKLLASPS-----VDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSM 383 (670)
Q Consensus 309 l~~~~~~~~~~i~~~~~i~~L~~lL~~~~-----~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~ 383 (670)
++.++++.+..+++.|+++.|+.++..++ ..+...+++++.+++.+...........++++.|+.++ .+.++++
T Consensus 189 La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v 267 (529)
T 3tpo_A 189 IAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEV 267 (529)
T ss_dssp HHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHH
T ss_pred HhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHH
Confidence 99988999999999999999999998644 45678999999999977654444444567789999998 7888999
Q ss_pred HHHHHHHHHhhhcCCCCCC-hhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCC
Q 037562 384 LRTATWTLFNFCRGKPQPP-FNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHS 462 (670)
Q Consensus 384 ~~~a~~~L~~l~~~~~~~~-~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~ 462 (670)
+..++|+|.+++...+... .....|++|.|+.++.+++..++..++.++++++..++.....+.+.|+++.|+.++.++
T Consensus 268 ~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~ 347 (529)
T 3tpo_A 268 LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP 347 (529)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC
Confidence 9999999999998763332 233478999999999999999999999999999998888888999999999999999999
Q ss_pred CccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc-CCHHHHHHHHhcCChHHHH
Q 037562 463 SSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC-GNREQIQAVIDSGLIGPIV 541 (670)
Q Consensus 463 ~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~ 541 (670)
++.++..|+++|+|++.+++.....+++.|+++.|+.++.++ +..++..|+|+|+|++. +++++...+++.|+++.|+
T Consensus 348 ~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~ 426 (529)
T 3tpo_A 348 KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLM 426 (529)
T ss_dssp SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHH
Confidence 999999999999999999988888899999999999999999 99999999999999987 5788889999999999999
Q ss_pred HHhhcCChhHHHHHHHHHHHhcCC----CC-HHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhh
Q 037562 542 NLLQNTEFDTKKEAAWAISNATKF----GT-HEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGV 610 (670)
Q Consensus 542 ~ll~~~~~~v~~~a~~aL~~l~~~----~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~ 610 (670)
++|.+.|++++..++.+|.++... +. ......+.+.|+++.|..+..+++.+|...|..++.++|..++
T Consensus 427 ~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~ 500 (529)
T 3tpo_A 427 NLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEE 500 (529)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC----
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence 999999999999999999999742 12 3344556789999999999999999999999999999986543
No 8
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=3.5e-36 Score=325.86 Aligned_cols=397 Identities=14% Similarity=0.096 Sum_probs=333.1
Q ss_pred hhhHHHHhhcchhhhhhc---cccCCCccccchhhhhhccHHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCCCCcHHHH
Q 037562 203 TTIKYLYLKKLGEFLQSQ---RSRISTPVLSLNLQSKLEILPAMVDGVWSD--DNSLQLEATTLFINLLSFDRSPPIDEV 277 (670)
Q Consensus 203 ~~i~~l~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~ 277 (670)
..++.++.-.+.++..+. .+...+.+. ...+.++.++++|.++ +.+++..|+++|..++.. .+....+
T Consensus 344 ~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g-----~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~--~~vk~~l 416 (810)
T 3now_A 344 DGIRVRALVGLCKLGSYGGQDAAIRPFGDG-----AALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD--AECKEKL 416 (810)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTTSCCSSTTT-----HHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTS--HHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCccccchhhc-----cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC--cHHHHHH
Confidence 456777766666665322 222333322 1224478888988877 889999999999999665 4555566
Q ss_pred H-HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh-----------------------------hhH---HHHHhCC
Q 037562 278 I-QSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTS-----------------------------ENT---KVVIDHG 324 (670)
Q Consensus 278 ~-~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~-----------------------------~~~---~~i~~~~ 324 (670)
+ +.|++|.|++++++++ +.+++.|+++|+|++.+++ ..+ +.+++.|
T Consensus 417 v~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaG 495 (810)
T 3now_A 417 IEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEG 495 (810)
T ss_dssp HHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTT
T ss_pred HHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCc
Confidence 6 5799999999999988 8999999999999998542 122 7889999
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCC-h
Q 037562 325 AVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPP-F 403 (670)
Q Consensus 325 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~-~ 403 (670)
++|.|+.+++++++.+++.|+|+|+|++.+ +++|..+.+.|++++|+.++ .+.++..++.|+|+|.+++....... +
T Consensus 496 aVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~ 573 (810)
T 3now_A 496 ITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSF 573 (810)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhh
Confidence 999999999999999999999999999965 66899999999999999999 66778899999999999987542211 1
Q ss_pred --hhhhhhHHHHHHhhccCC-hhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcC
Q 037562 404 --NQVRPALPVLAQLIRSND-EEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKG 480 (670)
Q Consensus 404 --~~~~~~i~~L~~lL~~~~-~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 480 (670)
....+++|.|+.+|.++. ...+..|+++|.|++..+++..+.+++.|+++.|+.++.++++.++..|+++|+|++.+
T Consensus 574 ~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~ 653 (810)
T 3now_A 574 SGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS 653 (810)
T ss_dssp TTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS
T ss_pred cchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence 123578999999998663 34557899999999998888888899999999999999999999999999999999986
Q ss_pred CchhhHHHHh-CCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHh-cCChHHHHHHhhcCChhHHHHHHHH
Q 037562 481 DDFQTQCIIN-CGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVID-SGLIGPIVNLLQNTEFDTKKEAAWA 558 (670)
Q Consensus 481 ~~~~~~~l~~-~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~a 558 (670)
.+. ...+++ .|.++.|+.++.+. +..+++.|+|+|+|++.+++...+.+++ .|+++.|++++.+++.+++..|+++
T Consensus 654 ~~~-~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~a 731 (810)
T 3now_A 654 EDV-IKMFEGNNDRVKFLALLCEDE-DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVI 731 (810)
T ss_dssp HHH-HHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred hHH-HHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHH
Confidence 654 444554 78999999999998 9999999999999999888888999998 8999999999999999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHcCCcHHHHhhccCC---ChHHHHHHHHHHHHHHHhhhhh
Q 037562 559 ISNATKFGTHEQIKHLVREGCVKPLCDLLLCA---DPKIVTVCLEGLENILKVGVAE 612 (670)
Q Consensus 559 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~---~~~v~~~a~~~l~~l~~~~~~~ 612 (670)
+.|++.. +++....+.+.|++++|.++++.. +++++..|..+|.+++..+.-.
T Consensus 732 L~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~~ 787 (810)
T 3now_A 732 ILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIE 787 (810)
T ss_dssp HHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCcc
Confidence 9999985 678899999999999999999654 7899999999999999877643
No 9
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=4.4e-36 Score=314.85 Aligned_cols=368 Identities=19% Similarity=0.232 Sum_probs=312.3
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHH
Q 037562 282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDL 361 (670)
Q Consensus 282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 361 (670)
.++.++.+|++++ ++++..|+++|.+++.+++..+..+++.|+++.|+++|+++++.++..|+++|.|++.++++.+..
T Consensus 3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5899999999998 899999999999999877788889999999999999999999999999999999999988889999
Q ss_pred HHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhc--------c--------CChhHH
Q 037562 362 VLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIR--------S--------NDEEVL 425 (670)
Q Consensus 362 i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~--------~--------~~~~v~ 425 (670)
+.+.|++++|+.+|..+.++++++.++|+|+|++..+..+..... |++|.|+.++. + .+++++
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~ 160 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF 160 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence 999999999999995478899999999999999998544333444 99999999993 2 256777
Q ss_pred HHHHHHHHHhccCChHHHHHHHHc-CCHHHHHHhcCC------CCccchhHHHHHHHHhhcC------------------
Q 037562 426 TDACWALSYLSDGTNDKVQAVIEA-GVYPRLVELLGH------SSSSVLTPALRTIRNIVKG------------------ 480 (670)
Q Consensus 426 ~~al~~L~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~------------------ 480 (670)
..++++|+|++.. ++....+.+. |+++.|+.++.+ .+..++..|+.++.+++..
T Consensus 161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~ 239 (457)
T 1xm9_A 161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239 (457)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence 8999999999987 6677778887 999999999985 4567888999999998631
Q ss_pred --------------------------------CchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHH--
Q 037562 481 --------------------------------DDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNRE-- 526 (670)
Q Consensus 481 --------------------------------~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~-- 526 (670)
.+...+.+++.++++.|+.+|.+..++.+++.|+|+|+|++.++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~ 319 (457)
T 1xm9_A 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319 (457)
T ss_dssp --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence 1123344556778899999998776789999999999999986433
Q ss_pred -HH-HHHH-hcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCCh------HHHHH
Q 037562 527 -QI-QAVI-DSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADP------KIVTV 597 (670)
Q Consensus 527 -~~-~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~------~v~~~ 597 (670)
.. +..+ +.|++|.|++++.+++.++++.|+++|.+++.. + ....++..|+++.|++++...++ ++...
T Consensus 320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~-~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~ 396 (457)
T 1xm9_A 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--P-LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS 396 (457)
T ss_dssp HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--G-GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--H-HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence 22 3344 689999999999999999999999999999984 3 34556677899999999987643 68889
Q ss_pred HHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCC-CHHHHHHHHHHHHHhcCCccccC
Q 037562 598 CLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHD-DNGISEKAVEILETYWSSRVIGR 668 (670)
Q Consensus 598 a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~-~~~v~~~a~~~l~~~~~~~~~~~ 668 (670)
+++++.+++.... .....+.++||++.|.+|+.+. ++++++.|.++|+.||.+.+.+.
T Consensus 397 ~l~~l~ni~~~~~-------------~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~~ 455 (457)
T 1xm9_A 397 ACYTVRNLMASQP-------------QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQG 455 (457)
T ss_dssp HHHHHHHHHTTCT-------------HHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCSS
T ss_pred HHHHHHHHHhcCH-------------HHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhhc
Confidence 9999999885432 2577888999999999999999 99999999999999999887653
No 10
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=1.8e-35 Score=319.77 Aligned_cols=427 Identities=17% Similarity=0.184 Sum_probs=356.4
Q ss_pred hhhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCC
Q 037562 203 TTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGV 282 (670)
Q Consensus 203 ~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~ 282 (670)
..++......+.++..+...+..... .|.+|.+++.+++++++++..|+++|.+++... ......+.+.|+
T Consensus 74 ~~~~~~a~~~L~~ls~~~~~~~~i~~--------~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~ 144 (529)
T 1jdh_A 74 VETARCTAGTLHNLSHHREGLLAIFK--------SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGG 144 (529)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHH--------TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHcCchhHHHHHH--------cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCC
Confidence 44677777777777665443222221 277999999999999999999999999998874 455677778999
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchhHHH
Q 037562 283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP-SVDVRKQTVWALGNVAGDSPRCRDL 361 (670)
Q Consensus 283 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~ 361 (670)
++.|++++.+++ ++++..++.+|.+++.++++.+..+.+.|+++.++.++++. +...+..++.+|.+++.. +..+..
T Consensus 145 i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~ 222 (529)
T 1jdh_A 145 LQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPA 222 (529)
T ss_dssp HHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHH
T ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHH
Confidence 999999999988 89999999999999998899999999999999999999874 456777889999999964 567888
Q ss_pred HHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChH
Q 037562 362 VLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTND 441 (670)
Q Consensus 362 i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~ 441 (670)
+.+.|+++.++.++ .+.++.+++.++|+|.+++...+.. ....+++|.+++++.+++++++..++++|++++..+++
T Consensus 223 ~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~ 299 (529)
T 1jdh_A 223 IVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK 299 (529)
T ss_dssp HHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHHhcCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH
Confidence 99999999999999 5668899999999999999876432 23468999999999999999999999999999988887
Q ss_pred HHHHHHHcCCHHHHHHhcCC--CCccchhHHHHHHHHhhcCCch---hhHHHHhCCChHHHHHhhccCCchhHHHHHHHH
Q 037562 442 KVQAVIEAGVYPRLVELLGH--SSSSVLTPALRTIRNIVKGDDF---QTQCIINCGALPYFLDMLVHNHEESIKKEVSWI 516 (670)
Q Consensus 442 ~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~---~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~ 516 (670)
....+.+.|+++.++.++.+ +++.++..|+++|+|++.+.+. ....+.+.|+++.|+.++.++.++.++..|+|+
T Consensus 300 ~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~ 379 (529)
T 1jdh_A 300 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 379 (529)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHH
Confidence 88889999999999999976 3368999999999999886543 345678999999999999988346999999999
Q ss_pred HHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHH----------------------hcCCCCHHHHHHH
Q 037562 517 ISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISN----------------------ATKFGTHEQIKHL 574 (670)
Q Consensus 517 L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~----------------------l~~~~~~~~~~~l 574 (670)
++|++.+ +.....+.+.|+++.|++++.+++++++..|+|++.| ++. +++.+..+
T Consensus 380 l~nl~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~--~~~~~~~l 456 (529)
T 1jdh_A 380 IRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVI 456 (529)
T ss_dssp HHHHTTS-GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHH
T ss_pred HHHHhcC-hhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc--CchHHHHH
Confidence 9999875 4445788899999999999998777777766665554 554 45667788
Q ss_pred HHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHH
Q 037562 575 VREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAV 654 (670)
Q Consensus 575 ~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~ 654 (670)
.+.|+++.|+.++.+++++++..+.+++.++.... .++..+.+.|+++.|..++.+++++|++.|.
T Consensus 457 ~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~--------------~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~ 522 (529)
T 1jdh_A 457 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK--------------EAAEAIEAEGATAPLTELLHSRNEGVATYAA 522 (529)
T ss_dssp HHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSH--------------HHHHHHHHTTCHHHHHHGGGCSSHHHHHHHH
T ss_pred hccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCH--------------HHHHHHHHcCChHHHHHHhcCCCHHHHHHHH
Confidence 99999999999999999999999999999976321 2477889999999999999999999999999
Q ss_pred HHHHHh
Q 037562 655 EILETY 660 (670)
Q Consensus 655 ~~l~~~ 660 (670)
+++.++
T Consensus 523 ~aL~~l 528 (529)
T 1jdh_A 523 AVLFRM 528 (529)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999875
No 11
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=3e-36 Score=309.48 Aligned_cols=369 Identities=17% Similarity=0.197 Sum_probs=297.2
Q ss_pred hhhhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCC-----------HHHHHHH
Q 037562 234 QSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDY-----------PQLQFKA 302 (670)
Q Consensus 234 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~-----------~~v~~~a 302 (670)
...++.++.++..+.+.+++ +..+.|..+... .+.+..+++.|++|.|+++|+..+. ++++..|
T Consensus 28 ~~~~~~~~~l~~~~~~~~~~---~~~~~ll~~~~~--~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a 102 (458)
T 3nmz_A 28 GTKVEMVYSLLSMLGTHDKD---DMSRTLLAMSSS--QDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARA 102 (458)
T ss_dssp -----------------CCH---HHHHHHHHHHSS--TTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHH
T ss_pred CchHHHHHHHHHHhcCCCHH---HHHHHHHHHHcC--CcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHH
Confidence 34557789999999887776 356666666554 4556889999999999999997542 6999999
Q ss_pred HHHHHHHcCCChhhHHHHHhCCCh----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHHhhCCCchh
Q 037562 303 AWALTNIASGTSENTKVVIDHGAV----------PIFVKLLASPS--VD-----VRK-------QTVWALGNVAGDSPRC 358 (670)
Q Consensus 303 ~~~L~~l~~~~~~~~~~i~~~~~i----------~~L~~lL~~~~--~~-----v~~-------~a~~~L~~l~~~~~~~ 358 (670)
+|+|+|++.+.++..+...+.+++ +.+++++.+.. .+ +++ +|+|+|+|++.+ +++
T Consensus 103 ~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~ 181 (458)
T 3nmz_A 103 SAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEH 181 (458)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHH
Confidence 999999999888888888888877 66777776642 22 555 999999999765 889
Q ss_pred HHHHHhcCChHHHHHHhcc----------cCChhHHHHHHHHHHhhhcCCCCCChhh--hhhhHHHHHHhhccCChhHHH
Q 037562 359 RDLVLSQGALIPLLAELNE----------NANLSMLRTATWTLFNFCRGKPQPPFNQ--VRPALPVLAQLIRSNDEEVLT 426 (670)
Q Consensus 359 ~~~i~~~~~i~~Ll~~l~~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~--~~~~i~~L~~lL~~~~~~v~~ 426 (670)
|+.+.+.|++++|+.++.. ..++.+++.|+|+|.|++.+++.....+ ..|++|.|+.+|.+++++++.
T Consensus 182 R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~ 261 (458)
T 3nmz_A 182 RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQ 261 (458)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHH
Confidence 9999999999999999942 2346789999999999998864333333 356799999999999999999
Q ss_pred HHHHHHHHhccC-ChHHHHHHHHcCCHHHHHHhc-CCCCccchhHHHHHHHHhhcCCchhhHHHH-hCCChHHHHHhhcc
Q 037562 427 DACWALSYLSDG-TNDKVQAVIEAGVYPRLVELL-GHSSSSVLTPALRTIRNIVKGDDFQTQCII-NCGALPYFLDMLVH 503 (670)
Q Consensus 427 ~al~~L~~l~~~-~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~~~~L~~~l~~ 503 (670)
.++++|+|++.. ++.....+.+.|+++.|+.+| .+++..++..|+.+|+||+.+.++....+. ..|+++.|+.+|.+
T Consensus 262 ~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~ 341 (458)
T 3nmz_A 262 VIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTY 341 (458)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcC
Confidence 999999999975 556777789999999999975 557788999999999999985555455565 78999999999988
Q ss_pred CCch---hHHHHHHHHHHHhhc---CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHc
Q 037562 504 NHEE---SIKKEVSWIISNITC---GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVRE 577 (670)
Q Consensus 504 ~~~~---~v~~~a~~~L~~l~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~ 577 (670)
..+. ++++.|+|+|.|++. +++++++.+.+.|+++.|+.++.+++.+++++|+++|.|++.. ++++...+.+.
T Consensus 342 ~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~ 420 (458)
T 3nmz_A 342 RSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDM 420 (458)
T ss_dssp CCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHHHHHHC
Confidence 7322 599999999999987 7889999999999999999999999999999999999999965 78899999999
Q ss_pred CCcHHHHhhccCCChHHHHHHHHHHHHHHHhh
Q 037562 578 GCVKPLCDLLLCADPKIVTVCLEGLENILKVG 609 (670)
Q Consensus 578 ~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~ 609 (670)
|+++.|+++++++++.++..|.++|.+++...
T Consensus 421 G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 421 GAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp THHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999998754
No 12
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=100.00 E-value=1.9e-36 Score=327.85 Aligned_cols=434 Identities=14% Similarity=0.105 Sum_probs=349.4
Q ss_pred hhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcC--
Q 037562 204 TIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSG-- 281 (670)
Q Consensus 204 ~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g-- 281 (670)
.++.-+...+.....+...+...... + +|.|+..++++++.++..|+.+|+++.+....+.....++.|
T Consensus 305 ~~q~~A~~al~~aa~~~~~R~~I~~~--------g-v~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i 375 (810)
T 3now_A 305 LQQRVACECLIAASSKKDKAKALCEQ--------G-VDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAA 375 (810)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHTTHHH--------H-HHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHc--------C-cHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccH
Confidence 34445555555555554433333322 3 489999999888999999999999997642112211222223
Q ss_pred --CHHHHHHhhcCC--CCHHHHHHHHHHHHHHcCCChhhHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc
Q 037562 282 --VVPRFVEFLMRQ--DYPQLQFKAAWALTNIASGTSENTKVVI-DHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSP 356 (670)
Q Consensus 282 --~l~~L~~ll~~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 356 (670)
+++.++++|.++ + ++++..|+++|.+++. +++.+..++ +.|+++.|+.++++++..++..|+++|+|++.+.+
T Consensus 376 ~~Lv~~l~~lL~~~~~d-~~v~~~AveaLayLS~-~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d 453 (810)
T 3now_A 376 LKLAEACRRFLIKPGKD-KDIRRWAADGLAYLTL-DAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYE 453 (810)
T ss_dssp HHHHHHHHHHHHCSSCC-SSHHHHHHHHHHHHTT-SHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHHhC-CcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCch
Confidence 467788899887 6 7999999999999998 667777766 57999999999999999999999999999997542
Q ss_pred -----------------------------hhH---HHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChh
Q 037562 357 -----------------------------RCR---DLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFN 404 (670)
Q Consensus 357 -----------------------------~~~---~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 404 (670)
..+ +.+.+.|+++.|+.++ .+.++.++..|+|+|.|++.+.......
T Consensus 454 ~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL-~s~s~~vqe~Aa~aL~NLA~d~~~r~~V 532 (810)
T 3now_A 454 KQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALA-KTESHNSQELIARVLNAVCGLKELRGKV 532 (810)
T ss_dssp CCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHH-TCCCHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 122 5778999999999999 7788999999999999999765555555
Q ss_pred hhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHH--HHHcCCHHHHHHhcCCCCc-cchhHHHHHHHHhhcCC
Q 037562 405 QVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQA--VIEAGVYPRLVELLGHSSS-SVLTPALRTIRNIVKGD 481 (670)
Q Consensus 405 ~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~--~~~~~~i~~L~~lL~~~~~-~v~~~a~~~L~~l~~~~ 481 (670)
...|++|.|+.++.++++..+..|+++|++++...+..... ....++++.|+.+|.++.. ..+..|+++|.|++..+
T Consensus 533 v~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~ 612 (810)
T 3now_A 533 VQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN 612 (810)
T ss_dssp HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred HHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC
Confidence 56899999999999999999999999999998543322110 0113689999999986544 33568999999999988
Q ss_pred chhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHh-cCChHHHHHHhhcCChhHHHHHHHHHH
Q 037562 482 DFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVID-SGLIGPIVNLLQNTEFDTKKEAAWAIS 560 (670)
Q Consensus 482 ~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~ 560 (670)
+.....+++.|+++.|+.++.++ ++.+++.|+++++|++.+ ++....+.+ .|.++.|+.++.+++..++..|+++|+
T Consensus 613 d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALa 690 (810)
T 3now_A 613 ESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALA 690 (810)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 88888899999999999999998 999999999999999876 445566665 789999999999999999999999999
Q ss_pred HhcCCCCHHHHHHHHH-cCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHH
Q 037562 561 NATKFGTHEQIKHLVR-EGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIE 639 (670)
Q Consensus 561 ~l~~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~ 639 (670)
+++.. ++...+.+++ .|+++.|++++.+++.++++.|++++.++...+.. ....+.+.|+++.|.
T Consensus 691 nLt~~-s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e-------------~~~~l~e~G~i~~L~ 756 (810)
T 3now_A 691 IITSV-SVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEE-------------IAKKLFETDIMELLS 756 (810)
T ss_dssp HHHHH-CHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHH-------------HHHHHHTSTHHHHHT
T ss_pred HHhCC-CHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHH-------------HHHHHHHCCCHHHHH
Confidence 99985 5778888888 89999999999999999999999999999864321 367888999999999
Q ss_pred HhhcC---CCHHHHHHHHHHHHHhcCCcc
Q 037562 640 NLQSH---DDNGISEKAVEILETYWSSRV 665 (670)
Q Consensus 640 ~L~~~---~~~~v~~~a~~~l~~~~~~~~ 665 (670)
.+... .+.++.+.|.++|+.+.....
T Consensus 757 ~LL~~~d~~~~~i~e~Al~aL~~ll~~g~ 785 (810)
T 3now_A 757 GLGQLPDDTRAKAREVATQCLAAAERYRI 785 (810)
T ss_dssp TSCCCTTSTTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCcccCcHHHHHHHHHHHHHHHhCCC
Confidence 98644 478999999999988765443
No 13
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.9e-34 Score=316.07 Aligned_cols=427 Identities=17% Similarity=0.178 Sum_probs=359.2
Q ss_pred hhhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCC
Q 037562 203 TTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGV 282 (670)
Q Consensus 203 ~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~ 282 (670)
..++..+...+.++..+...+..... .+.++.|++.++++++.++..|+++|.+++... ......+++.|+
T Consensus 71 ~~~~~~A~~~L~~Ls~~~~~~~~i~~--------~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~ 141 (644)
T 2z6h_A 71 VETARCTAGTLHNLSHHREGLLAIFK--------SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGG 141 (644)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHT--------TTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHhcChhhHHHHHH--------cCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCC
Confidence 45677777777777666543322222 267999999999999999999999999998874 455677788999
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCCchhHHH
Q 037562 283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASP-SVDVRKQTVWALGNVAGDSPRCRDL 361 (670)
Q Consensus 283 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~ 361 (670)
++.|++++++++ ++++..++.+|.+++.++++.+..+.+.|+++.|+.++++. ...++..++.+|.+++. .+..+..
T Consensus 142 i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~ 219 (644)
T 2z6h_A 142 LQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPA 219 (644)
T ss_dssp HHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHH
T ss_pred hHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHH
Confidence 999999999988 89999999999999987899999999999999999999875 46788899999999995 4567889
Q ss_pred HHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChH
Q 037562 362 VLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTND 441 (670)
Q Consensus 362 i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~ 441 (670)
+.+.|+++.++.++ .+.+..+++.++++|.+++...+.. ....++++.|++++.+++++++..++++|++++...+.
T Consensus 220 l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~ 296 (644)
T 2z6h_A 220 IVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYK 296 (644)
T ss_dssp HHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999 5668899999999999999875332 33468999999999999999999999999999988878
Q ss_pred HHHHHHHcCCHHHHHHhcCCCC--ccchhHHHHHHHHhhcCCch---hhHHHHhCCChHHHHHhhccCCchhHHHHHHHH
Q 037562 442 KVQAVIEAGVYPRLVELLGHSS--SSVLTPALRTIRNIVKGDDF---QTQCIINCGALPYFLDMLVHNHEESIKKEVSWI 516 (670)
Q Consensus 442 ~~~~~~~~~~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~---~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~ 516 (670)
..+.+.+.|+++.|+.++.+.+ +.++..|+++|++++...+. ....+++.|+++.|+.+|.+..++.+++.|+|+
T Consensus 297 ~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 376 (644)
T 2z6h_A 297 NKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 376 (644)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHH
Confidence 8888999999999999998732 68999999999999975442 233477889999999999987347999999999
Q ss_pred HHHhhcCCHHHHHHHHhcCChHHHHHHhhcCC----------------------hhHHHHHHHHHHHhcCCCCHHHHHHH
Q 037562 517 ISNITCGNREQIQAVIDSGLIGPIVNLLQNTE----------------------FDTKKEAAWAISNATKFGTHEQIKHL 574 (670)
Q Consensus 517 L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~----------------------~~v~~~a~~aL~~l~~~~~~~~~~~l 574 (670)
++|++.+.. ....+.+.|+++.|++++.+++ .+++..|+.+|.+++. ++..+..+
T Consensus 377 L~nLa~~~~-~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l 453 (644)
T 2z6h_A 377 IRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVI 453 (644)
T ss_dssp HHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTT--SHHHHHHH
T ss_pred HHHHccCHH-HHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhc--CHHHHHHH
Confidence 999987644 4578889999999999998643 4566778888888887 45777788
Q ss_pred HHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHH
Q 037562 575 VREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAV 654 (670)
Q Consensus 575 ~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~ 654 (670)
.+.|+++.|++++.+.+++++..+.++|.++.... ..+..+.+.|+++.|..++.+++++++..|.
T Consensus 454 ~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~--------------~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~ 519 (644)
T 2z6h_A 454 RGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK--------------EAAEAIEAEGATAPLTELLHSRNEGVATYAA 519 (644)
T ss_dssp HHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSH--------------HHHHHHHHTTCHHHHHHHTTCSCHHHHHHHH
T ss_pred HhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCH--------------HHHHHHHHcCChhHHHHHHcCCCHHHHHHHH
Confidence 89999999999999999999999999999987431 2477899999999999999999999977655
Q ss_pred HHHHHh
Q 037562 655 EILETY 660 (670)
Q Consensus 655 ~~l~~~ 660 (670)
++|..+
T Consensus 520 ~aL~~l 525 (644)
T 2z6h_A 520 AVLFRM 525 (644)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544444
No 14
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=100.00 E-value=2.3e-34 Score=310.26 Aligned_cols=396 Identities=24% Similarity=0.349 Sum_probs=341.2
Q ss_pred hhhhHHHHhhcchhhhhhccccCCCccccchhhh--hhccHHHHHHHhcCCC-hHHHHHHHHHHHHHhcCCCCCcHHHHH
Q 037562 202 NTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQS--KLEILPAMVDGVWSDD-NSLQLEATTLFINLLSFDRSPPIDEVI 278 (670)
Q Consensus 202 ~~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~l~~~l~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~ 278 (670)
+..++..+...+++++...... +.+. ..+.+|.|++.+.+++ +.++..|+++|.+++.+. .+....++
T Consensus 87 ~~~~~~~A~~~L~~l~s~~~~~--------~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~ 157 (528)
T 4b8j_A 87 DNNLQLEATTQFRKLLSIERSP--------PIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVI 157 (528)
T ss_dssp CHHHHHHHHHHHHHHHTCSSSC--------CHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCCc--------hHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHH
Confidence 3456667777777776543211 1111 1267999999999876 999999999999998864 56677888
Q ss_pred HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCCch
Q 037562 279 QSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLL-ASPSVDVRKQTVWALGNVAGDSPR 357 (670)
Q Consensus 279 ~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~ 357 (670)
+.|+++.|+.++.+++ +.++..|+++|++++..++..+..+.+.|+++.|+.++ .+.++.++..|+++|++++...+.
T Consensus 158 ~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~ 236 (528)
T 4b8j_A 158 DHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQ 236 (528)
T ss_dssp HTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSC
T ss_pred hCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999988 89999999999999987888999999999999999999 668999999999999999987544
Q ss_pred hHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCC-ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhc
Q 037562 358 CRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQP-PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLS 436 (670)
Q Consensus 358 ~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~ 436 (670)
.. .....++++.|+.++ .+.++.++..++++|.+++...+.. ......++++.|+.++.++++.++..++++|++++
T Consensus 237 ~~-~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~ 314 (528)
T 4b8j_A 237 PS-FEQTRPALPALARLI-HSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV 314 (528)
T ss_dssp CC-HHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred Cc-HHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence 33 334578899999999 7788999999999999999775332 23334689999999999999999999999999999
Q ss_pred cCChHHHHHHHHcCCHHHHHHhcCCC-CccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHH
Q 037562 437 DGTNDKVQAVIEAGVYPRLVELLGHS-SSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSW 515 (670)
Q Consensus 437 ~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~ 515 (670)
...+...+.+++.|+++.|+.+|.++ ++.++..|+++|+|++.+++.....+++.|+++.|+.++.++ ++.++..|+|
T Consensus 315 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~ 393 (528)
T 4b8j_A 315 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAW 393 (528)
T ss_dssp TSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHH
Confidence 98888888899999999999999998 889999999999999998888888888999999999999999 9999999999
Q ss_pred HHHHhhcC-CHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCH----------HHHHHHHHcCCcHHHH
Q 037562 516 IISNITCG-NREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTH----------EQIKHLVREGCVKPLC 584 (670)
Q Consensus 516 ~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~----------~~~~~l~~~~~i~~L~ 584 (670)
+|+|++.. +++....+++.|+++.|+.++.+++++++..|+++|.+++..+.. .....+.+.|+++.+.
T Consensus 394 aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 473 (528)
T 4b8j_A 394 AISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIE 473 (528)
T ss_dssp HHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHH
Confidence 99999885 788899999999999999999999999999999999999875322 2567778899999999
Q ss_pred hhccCCChHHHHHHHHHHHHHHHhhh
Q 037562 585 DLLLCADPKIVTVCLEGLENILKVGV 610 (670)
Q Consensus 585 ~ll~~~~~~v~~~a~~~l~~l~~~~~ 610 (670)
.+.++.+++++..|..++.+++...+
T Consensus 474 ~L~~~~~~~v~~~a~~il~~~~~~e~ 499 (528)
T 4b8j_A 474 NLQSHDNNEIYEKAVKILEAYWMDEE 499 (528)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHCC---
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCCcc
Confidence 99999999999999999999886543
No 15
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=100.00 E-value=3.2e-34 Score=308.97 Aligned_cols=397 Identities=23% Similarity=0.318 Sum_probs=340.6
Q ss_pred hhhhHHHHhhcchhhhhhccccCCCccccchhhh--hhccHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCCCCcHHHHH
Q 037562 202 NTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQS--KLEILPAMVDGVWSD-DNSLQLEATTLFINLLSFDRSPPIDEVI 278 (670)
Q Consensus 202 ~~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 278 (670)
+..++..+...+++++...... +++. ..+.+|.|++.+.++ ++.++..|+++|.+++... .+....++
T Consensus 100 ~~~~~~~A~~~L~~ll~~~~~~--------~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~ 170 (530)
T 1wa5_B 100 DMQEQLSATVKFRQILSREHRP--------PIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVV 170 (530)
T ss_dssp SHHHHHHHHHHHHHHTCCSSSC--------SHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCc--------cHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHH
Confidence 3457777777777776543111 0111 126799999999986 8999999999999998764 45667788
Q ss_pred HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 037562 279 QSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC 358 (670)
Q Consensus 279 ~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 358 (670)
+.|+++.|+.++.+++ +.++..|+++|++++..++..+..+...|+++.|+.++.++++.++..|+++|++++.+....
T Consensus 171 ~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~ 249 (530)
T 1wa5_B 171 DADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ 249 (530)
T ss_dssp HTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSC
T ss_pred HCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCC
Confidence 8999999999999888 899999999999999977899999999999999999999999999999999999999765222
Q ss_pred HHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCC-ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 037562 359 RDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQP-PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSD 437 (670)
Q Consensus 359 ~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~ 437 (670)
.......++++.|+.++ .+.++.++..++++|.+++...+.. ......++++.|+.++.++++.++..++++|++++.
T Consensus 250 ~~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~ 328 (530)
T 1wa5_B 250 PDWSVVSQALPTLAKLI-YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 328 (530)
T ss_dssp CCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHc
Confidence 33445678899999999 6778899999999999999875322 222335899999999999999999999999999998
Q ss_pred CChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHH
Q 037562 438 GTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWII 517 (670)
Q Consensus 438 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L 517 (670)
..+...+.+.+.|+++.++.+|.++++.++..|+++|++++.+.+.....+++.|+++.|+.++.++ ++.++..|+|+|
T Consensus 329 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL 407 (530)
T 1wa5_B 329 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAI 407 (530)
T ss_dssp SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHH
Confidence 8888888889999999999999999999999999999999998887788888999999999999988 999999999999
Q ss_pred HHhhcC-CH--HHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCH----------HHHHHHHHcCCcHHHH
Q 037562 518 SNITCG-NR--EQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTH----------EQIKHLVREGCVKPLC 584 (670)
Q Consensus 518 ~~l~~~-~~--~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~----------~~~~~l~~~~~i~~L~ 584 (670)
++++.. .+ +....+++.|+++.|+.++.+++++++..|+++|.+++..+.. .....+.+.|+++.|.
T Consensus 408 ~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~ 487 (530)
T 1wa5_B 408 SNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIF 487 (530)
T ss_dssp HHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHH
Confidence 999874 44 7788889999999999999999999999999999999875321 2456678899999999
Q ss_pred hhccCCChHHHHHHHHHHHHHHHhhh
Q 037562 585 DLLLCADPKIVTVCLEGLENILKVGV 610 (670)
Q Consensus 585 ~ll~~~~~~v~~~a~~~l~~l~~~~~ 610 (670)
.++.+++++++..+..++.+++...+
T Consensus 488 ~L~~~~~~~v~~~a~~il~~~~~~~~ 513 (530)
T 1wa5_B 488 NCQQNENDKIYEKAYKIIETYFGEEE 513 (530)
T ss_dssp GGGGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHcCCCHHHHHHHHHHHHHHCCccc
Confidence 99999999999999999999986544
No 16
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=100.00 E-value=2.4e-35 Score=309.21 Aligned_cols=363 Identities=17% Similarity=0.188 Sum_probs=302.5
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562 239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK 318 (670)
Q Consensus 239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 318 (670)
.+|.+++.|++++++++..|+++|.+++..+ ......+++.|++|.|+++|++++ ++++..|+++|.+++.++++++.
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence 4799999999999999999999999997653 444558999999999999999988 89999999999999997799999
Q ss_pred HHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc--------c-------CChh
Q 037562 319 VVIDHGAVPIFVKLLA-SPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE--------N-------ANLS 382 (670)
Q Consensus 319 ~i~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~--------~-------~~~~ 382 (670)
.+++.|+++.|+++|+ ++++++++.|+|+|+|++.+ +..+..+.+ |++++|+.++.. . .++.
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence 9999999999999999 78999999999999999988 668888888 999999999931 1 3567
Q ss_pred HHHHHHHHHHhhhcCCCCCChhhhh-hhHHHHHHhhcc------CChhHHHHHHHHHHHhccCC----------------
Q 037562 383 MLRTATWTLFNFCRGKPQPPFNQVR-PALPVLAQLIRS------NDEEVLTDACWALSYLSDGT---------------- 439 (670)
Q Consensus 383 ~~~~a~~~L~~l~~~~~~~~~~~~~-~~i~~L~~lL~~------~~~~v~~~al~~L~~l~~~~---------------- 439 (670)
+++.|+|+|.|++..+......... |+++.|+.++++ .+..++..++.++.+++...
T Consensus 159 v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~ 238 (457)
T 1xm9_A 159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR 238 (457)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccc
Confidence 8889999999999873222222223 999999999985 46678889999999987321
Q ss_pred ----------------------------------hHHHHHHHHcCCHHHHHHhcCCC-CccchhHHHHHHHHhhcCCchh
Q 037562 440 ----------------------------------NDKVQAVIEAGVYPRLVELLGHS-SSSVLTPALRTIRNIVKGDDFQ 484 (670)
Q Consensus 440 ----------------------------------~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~ 484 (670)
+...+.+.+.|+++.++.+|.+. ++.+++.|+++|+|++.++...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~ 318 (457)
T 1xm9_A 239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM 318 (457)
T ss_dssp ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred cccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcc
Confidence 01112234456788888888764 5789999999999999876442
Q ss_pred h----HHHH-hCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCCh------hHHH
Q 037562 485 T----QCII-NCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEF------DTKK 553 (670)
Q Consensus 485 ~----~~l~-~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~------~v~~ 553 (670)
. +.++ +.|+++.|+++|.++ +.++++.|+|+|+|++.+ ++ ...++..++++.|+++|..+++ ++..
T Consensus 319 ~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~-~~-~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~ 395 (457)
T 1xm9_A 319 SSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH-PL-LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILS 395 (457)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS-GG-GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred hHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcC-HH-HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHH
Confidence 2 3334 689999999999999 999999999999999874 33 4455667899999999997643 6888
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCC-ChHHHHHHHHHHHHHHHhh
Q 037562 554 EAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCA-DPKIVTVCLEGLENILKVG 609 (670)
Q Consensus 554 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~ 609 (670)
.++++|.++... +++....+.+.|+++.|++++.++ ++++++.|.++|.+++.+.
T Consensus 396 ~~l~~l~ni~~~-~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~ 451 (457)
T 1xm9_A 396 SACYTVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp HHHHHHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcch
Confidence 999999999876 567888889999999999999999 9999999999999988543
No 17
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=4.6e-34 Score=299.32 Aligned_cols=370 Identities=18% Similarity=0.219 Sum_probs=306.3
Q ss_pred HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-Cch
Q 037562 279 QSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGD-SPR 357 (670)
Q Consensus 279 ~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~ 357 (670)
..+.++.|+++|.+++ ++++..|+++|.+++.++++.+..+++.|+|+.|+.+|+++++.+++.|+++|.||+.+ +++
T Consensus 46 ~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred ccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence 4568999999999998 89999999999999988999999999999999999999999999999999999999985 688
Q ss_pred hHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhc------------------c
Q 037562 358 CRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIR------------------S 419 (670)
Q Consensus 358 ~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~------------------~ 419 (670)
.+..+.+.|++++|+.+|....+..+++.++++|++|+..+.. ...+..+++|.|++++. .
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~-k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSI-KMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGG-HHHHHHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh-hHHHHhccHHHHHHHHhccccccccccccccccccc
Confidence 9999999999999999996667889999999999999986533 33344678999999871 2
Q ss_pred CChhHHHHHHHHHHHhccCChHHHHHHHHc-CCHHHHHHhcCC------CCccchhHHHHHHHHhhcCCc----------
Q 037562 420 NDEEVLTDACWALSYLSDGTNDKVQAVIEA-GVYPRLVELLGH------SSSSVLTPALRTIRNIVKGDD---------- 482 (670)
Q Consensus 420 ~~~~v~~~al~~L~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~---------- 482 (670)
.++.++..+.++|.|++...++..+.+.+. |+++.|+.++++ .+...++.|+++|.||+....
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 367999999999999998877767777775 667799999874 456788999999999986521
Q ss_pred ---------------hhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCH---HH-HHHHHhcCChHHHHHH
Q 037562 483 ---------------FQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNR---EQ-IQAVIDSGLIGPIVNL 543 (670)
Q Consensus 483 ---------------~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~---~~-~~~l~~~~~i~~L~~l 543 (670)
.....+.+.++++.|+.++....++.+++.|+|+|.|++.+.. .. ...+.+.++++.|+++
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 1122223345567788999754489999999999999988642 22 2344467889999999
Q ss_pred hhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCC--------ChHHHHHHHHHHHHHHHhhhhhhcc
Q 037562 544 LQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCA--------DPKIVTVCLEGLENILKVGVAEMNT 615 (670)
Q Consensus 544 l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--------~~~v~~~a~~~l~~l~~~~~~~~~~ 615 (670)
|.+++.+++..|+++|.|++.... .. ..+..|+++.|+++|.+. +.+++..++++|.+++.....
T Consensus 364 L~s~~~~v~~~A~~aL~nLs~~~~--~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~---- 436 (584)
T 3l6x_A 364 LTNEHERVVKAASGALRNLAVDAR--NK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE---- 436 (584)
T ss_dssp GGCSCHHHHHHHHHHHHHHHTTCS--CH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH----
T ss_pred HcCCCHHHHHHHHHHHHHHhCChh--HH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH----
Confidence 999999999999999999998643 22 345789999999999776 467889999999999854332
Q ss_pred CCCCCCccHHHHHHHHhchHHHHHHhhcCC--CHHHHHHHHHHHHHhcCCccc
Q 037562 616 GTAVGDFNQYAQLVEEAEGLEKIENLQSHD--DNGISEKAVEILETYWSSRVI 666 (670)
Q Consensus 616 ~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~--~~~v~~~a~~~l~~~~~~~~~ 666 (670)
..+.+.+.|+++.|.+|..+. ++.+++.|.++|..+|.+.+.
T Consensus 437 ---------~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~el 480 (584)
T 3l6x_A 437 ---------AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKEL 480 (584)
T ss_dssp ---------HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHH
T ss_pred ---------HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHH
Confidence 356778999999999998775 889999999999999987654
No 18
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=3.4e-33 Score=311.80 Aligned_cols=433 Identities=17% Similarity=0.182 Sum_probs=362.9
Q ss_pred hhhhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcC
Q 037562 202 NTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSG 281 (670)
Q Consensus 202 ~~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g 281 (670)
+..++..+...+.++........... ..+.++.|++.++++++.++..|+++|.+++... ......+.+.|
T Consensus 206 d~~vr~~Aa~aL~~Ls~~~~~~~~i~--------~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g 276 (780)
T 2z6g_A 206 DVETARCTSGTLHNLSHHREGLLAIF--------KSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAG 276 (780)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHH--------HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHhCCchhHHHHH--------HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcC
Confidence 44566666677776665543211111 1277999999999999999999999999998874 45566677899
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCCchhHH
Q 037562 282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPS-VDVRKQTVWALGNVAGDSPRCRD 360 (670)
Q Consensus 282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~ 360 (670)
+++.|++++.+++ .+++..|+.+|.+++..+++.+..+.+.|+++.|+.++++.+ ...+..++.+|.+++.. +..+.
T Consensus 277 ~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~ 354 (780)
T 2z6g_A 277 GLQKMVALLNKTN-VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKP 354 (780)
T ss_dssp HHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHH
T ss_pred CHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHH
Confidence 9999999999988 899999999999999888999999999999999999999754 55667889999999964 55688
Q ss_pred HHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCh
Q 037562 361 LVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTN 440 (670)
Q Consensus 361 ~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~ 440 (670)
.+.+.|+++.|+.++ .+.+..+++.++++|.+++...+.. ....++++.|+.++.+.++.++..++++|++++...+
T Consensus 355 ~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~ 431 (780)
T 2z6g_A 355 AIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 431 (780)
T ss_dssp HHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHHHTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCH
T ss_pred HHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHHhccchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 888999999999999 5668899999999999999876332 2346899999999999999999999999999999888
Q ss_pred HHHHHHHHcCCHHHHHHhcCC-CCc-cchhHHHHHHHHhhcCCchh---hHHHHhCCChHHHHHhhccCCchhHHHHHHH
Q 037562 441 DKVQAVIEAGVYPRLVELLGH-SSS-SVLTPALRTIRNIVKGDDFQ---TQCIINCGALPYFLDMLVHNHEESIKKEVSW 515 (670)
Q Consensus 441 ~~~~~~~~~~~i~~L~~lL~~-~~~-~v~~~a~~~L~~l~~~~~~~---~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~ 515 (670)
.....+.+.|+++.|+.+|.+ ++. .++..|+++|++++...++. ...+...++++.|+.++.+..++.++..|+|
T Consensus 432 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~ 511 (780)
T 2z6g_A 432 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVG 511 (780)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHH
Confidence 888889999999999999986 333 89999999999998755432 3467788999999999998834599999999
Q ss_pred HHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCC----------------------hhHHHHHHHHHHHhcCCCCHHHHHH
Q 037562 516 IISNITCGNREQIQAVIDSGLIGPIVNLLQNTE----------------------FDTKKEAAWAISNATKFGTHEQIKH 573 (670)
Q Consensus 516 ~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~----------------------~~v~~~a~~aL~~l~~~~~~~~~~~ 573 (670)
+|+|++.+ +.....+.+.|+++.|++++.+++ .+++..++.+|.+++. ++.....
T Consensus 512 aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~ 588 (780)
T 2z6g_A 512 LIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIV 588 (780)
T ss_dssp HHHHHHSS-HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHH
T ss_pred HHHHHhcC-HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHH
Confidence 99999875 455578889999999999997543 3467788888999986 5677788
Q ss_pred HHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHH
Q 037562 574 LVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKA 653 (670)
Q Consensus 574 l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a 653 (670)
+.+.|+++.|+.++.+.++.++..+..+|.++.... ..+..+.+.|+++.|..++.+++++|+..|
T Consensus 589 l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~--------------~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A 654 (780)
T 2z6g_A 589 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK--------------EAAEAIEAEGATAPLTELLHSRNEGVATYA 654 (780)
T ss_dssp HHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSH--------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred HHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCH--------------HHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 889999999999999999999999999999987331 247789999999999999999999999998
Q ss_pred HHHHHHhcCCcc
Q 037562 654 VEILETYWSSRV 665 (670)
Q Consensus 654 ~~~l~~~~~~~~ 665 (670)
.++|.++..+..
T Consensus 655 ~~aL~~l~~~~~ 666 (780)
T 2z6g_A 655 AAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHHHHTTSC
T ss_pred HHHHHHHHcCCh
Confidence 888888765443
No 19
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=100.00 E-value=3.4e-34 Score=303.20 Aligned_cols=395 Identities=23% Similarity=0.318 Sum_probs=337.9
Q ss_pred hhhhHHHHhhcchhhhhhccccCCCccccchhhhh---hccHHHHHHHhcCC-ChHHHHHHHHHHHHHhcCCCCCcHHHH
Q 037562 202 NTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSK---LEILPAMVDGVWSD-DNSLQLEATTLFINLLSFDRSPPIDEV 277 (670)
Q Consensus 202 ~~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~l~~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~ 277 (670)
+..++..+...++.++...... +.+.. .+.++.+++.++++ ++.++..|+++|.+++... .+....+
T Consensus 33 ~~~~r~~A~~~L~~l~~~~~~~--------~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~ 103 (450)
T 2jdq_A 33 SPEQQLSATQKFRKLLSKEPNP--------PIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIV 103 (450)
T ss_dssp CHHHHHHHHHHHHHHHHSSSSC--------CHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCCC--------cHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHH
Confidence 4457778888888776532110 11111 15699999999987 8999999999999998764 4556677
Q ss_pred HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-
Q 037562 278 IQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLAS-PSVDVRKQTVWALGNVAGDS- 355 (670)
Q Consensus 278 ~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~- 355 (670)
++.|+++.|++++++++ ++++..|+++|++++..++..+..+++.|+++.++.++.+ ++..++..|+++|++++.+.
T Consensus 104 ~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~ 182 (450)
T 2jdq_A 104 IQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKS 182 (450)
T ss_dssp HHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSS
T ss_pred HhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCC
Confidence 88999999999999988 8999999999999999888899999999999999999995 78999999999999999765
Q ss_pred chhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCC-CChhhhhhhHHHHHHhhccCChhHHHHHHHHHHH
Q 037562 356 PRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQ-PPFNQVRPALPVLAQLIRSNDEEVLTDACWALSY 434 (670)
Q Consensus 356 ~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~ 434 (670)
+..+..+ ..++++.++.++ .+.++.++..++|+|.+++...+. .......++++.++.++.++++.++..++++|++
T Consensus 183 ~~~~~~~-~~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 260 (450)
T 2jdq_A 183 PPPEFAK-VSPCLNVLSWLL-FVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260 (450)
T ss_dssp SCCCGGG-TGGGHHHHHHHT-TCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CCCCHHH-HHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence 4332232 267899999999 677889999999999999986522 2233346899999999999999999999999999
Q ss_pred hccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHH
Q 037562 435 LSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVS 514 (670)
Q Consensus 435 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~ 514 (670)
++...+...+.+.+.|+++.++.++.++++.++..|+++|++++.+++...+.+++.|+++.|+.++.++ ++.+|..|+
T Consensus 261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~ 339 (450)
T 2jdq_A 261 IVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAA 339 (450)
T ss_dssp HTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHH
T ss_pred HhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHH
Confidence 9998888778888889999999999999999999999999999998888788888899999999999998 999999999
Q ss_pred HHHHHhhcC-CHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCH----------HHHHHHHHcCCcHHH
Q 037562 515 WIISNITCG-NREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTH----------EQIKHLVREGCVKPL 583 (670)
Q Consensus 515 ~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~----------~~~~~l~~~~~i~~L 583 (670)
|++++++.+ +++..+.+++.|+++.|++++.+++++++..|+++|.+++..+.. .....+.+.|+++.|
T Consensus 340 ~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l 419 (450)
T 2jdq_A 340 WAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKI 419 (450)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHH
Confidence 999999875 678888888999999999999999999999999999999875322 234677888999999
Q ss_pred HhhccCCChHHHHHHHHHHHHHHHhh
Q 037562 584 CDLLLCADPKIVTVCLEGLENILKVG 609 (670)
Q Consensus 584 ~~ll~~~~~~v~~~a~~~l~~l~~~~ 609 (670)
..++++++++++..+..++.+++...
T Consensus 420 ~~l~~~~~~~v~~~a~~~l~~~~~~~ 445 (450)
T 2jdq_A 420 EFLQSHENQEIYQKAFDLIEHYFGTE 445 (450)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHCCcc
Confidence 99999999999999999999998543
No 20
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=100.00 E-value=2.7e-34 Score=301.15 Aligned_cols=364 Identities=18% Similarity=0.186 Sum_probs=302.1
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-Chhh
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASG-TSEN 316 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~-~~~~ 316 (670)
+.++.++++|.+++++++..|+++|.+++..+ .+....+++.|++|.|+++|.+++ ++++..|+++|.+++.+ ++++
T Consensus 48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCHHH
Confidence 46999999999999999999999999998754 677888999999999999999998 89999999999999985 6999
Q ss_pred HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc-----------------cc
Q 037562 317 TKVVIDHGAVPIFVKLLAS-PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELN-----------------EN 378 (670)
Q Consensus 317 ~~~i~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~-----------------~~ 378 (670)
+..+++.|+|+.|+.+|++ .+..+++.|+++|+||+.. +..+..+.+ +++++|++++. ..
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~-~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~ 203 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI 203 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS-GGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred HHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence 9999999999999999997 6889999999999999974 567777775 56999999872 12
Q ss_pred CChhHHHHHHHHHHhhhcCCCC-CChhhh-hhhHHHHHHhhcc------CChhHHHHHHHHHHHhccCChHH--------
Q 037562 379 ANLSMLRTATWTLFNFCRGKPQ-PPFNQV-RPALPVLAQLIRS------NDEEVLTDACWALSYLSDGTNDK-------- 442 (670)
Q Consensus 379 ~~~~~~~~a~~~L~~l~~~~~~-~~~~~~-~~~i~~L~~lL~~------~~~~v~~~al~~L~~l~~~~~~~-------- 442 (670)
.++.++.+|+++|.||+...+. ...... .|+++.|+.++++ .+...++.++++|+||+......
T Consensus 204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~ 283 (584)
T 3l6x_A 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ 283 (584)
T ss_dssp CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence 3579999999999999987644 222332 5778899999874 46789999999999998652111
Q ss_pred -----------------HHHHHHcCCHHHHHHhcC-CCCccchhHHHHHHHHhhcCCchh----hHHHHhCCChHHHHHh
Q 037562 443 -----------------VQAVIEAGVYPRLVELLG-HSSSSVLTPALRTIRNIVKGDDFQ----TQCIINCGALPYFLDM 500 (670)
Q Consensus 443 -----------------~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~----~~~l~~~~~~~~L~~~ 500 (670)
.+.+.+.++++.++.+|. +.++.+++.|+++|.|++.+.... ...+.+.++++.|+.+
T Consensus 284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L 363 (584)
T 3l6x_A 284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL 363 (584)
T ss_dssp ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence 011222345677888885 467889999999999999865322 2234467899999999
Q ss_pred hccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcC--------ChhHHHHHHHHHHHhcCCCCHHHHH
Q 037562 501 LVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNT--------EFDTKKEAAWAISNATKFGTHEQIK 572 (670)
Q Consensus 501 l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~--------~~~v~~~a~~aL~~l~~~~~~~~~~ 572 (670)
|.++ +..+++.|+|+|+|++.+.. .. ..+..|+++.|+.+|.++ +.+++..|+++|.|++.. ++++.+
T Consensus 364 L~s~-~~~v~~~A~~aL~nLs~~~~-~~-~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~~~ 439 (584)
T 3l6x_A 364 LTNE-HERVVKAASGALRNLAVDAR-NK-ELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEAAK 439 (584)
T ss_dssp GGCS-CHHHHHHHHHHHHHHHTTCS-CH-HHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred HcCC-CHHHHHHHHHHHHHHhCChh-HH-HHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHHHH
Confidence 9999 99999999999999988543 23 345789999999999865 357899999999999876 789999
Q ss_pred HHHHcCCcHHHHhhccCC--ChHHHHHHHHHHHHHHHhh
Q 037562 573 HLVREGCVKPLCDLLLCA--DPKIVTVCLEGLENILKVG 609 (670)
Q Consensus 573 ~l~~~~~i~~L~~ll~~~--~~~v~~~a~~~l~~l~~~~ 609 (670)
.+.+.|+++.|++++.+. .+.+++.|.++|.++..+.
T Consensus 440 ~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~ 478 (584)
T 3l6x_A 440 KLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK 478 (584)
T ss_dssp HHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred HHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence 999999999999999876 8899999999999998643
No 21
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=100.00 E-value=2.6e-33 Score=302.88 Aligned_cols=432 Identities=17% Similarity=0.164 Sum_probs=355.9
Q ss_pred hhhhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcC-CChHHHHHHHHHHHHHhcCCCCCcHHHHHHc
Q 037562 202 NTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWS-DDNSLQLEATTLFINLLSFDRSPPIDEVIQS 280 (670)
Q Consensus 202 ~~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 280 (670)
+..++..+...+.++..+...+..... ..+.++.+++.+.+ ++++++..|+.+|.+++.. .+....+.+.
T Consensus 30 ~~~v~~~A~~~L~~l~~~~~~~~~~~~-------~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~ 100 (529)
T 1jdh_A 30 DQVVVNKAAVMVHQLSKKEASRHAIMR-------SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKS 100 (529)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHHT-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHcCCccHHHHHh-------CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHc
Confidence 456788888888888766543211111 12568999999974 5899999999999999765 4577888999
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 037562 281 GVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRD 360 (670)
Q Consensus 281 g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 360 (670)
|+++.|++++++++ +.++..|+++|.+++..++..+..+.+.|+++.|+.++.+++..++..++.+|.+++..+++.+.
T Consensus 101 g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~ 179 (529)
T 1jdh_A 101 GGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 179 (529)
T ss_dssp THHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999998 89999999999999987678888888999999999999999999999999999999998888999
Q ss_pred HHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCh
Q 037562 361 LVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTN 440 (670)
Q Consensus 361 ~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~ 440 (670)
.+.+.|+++.++.++....+...+..++.+|.+++............|+++.++.++.++++.++..+++++.+++...+
T Consensus 180 ~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~ 259 (529)
T 1jdh_A 180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT 259 (529)
T ss_dssp HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCCh
Confidence 99999999999999977666777788999999999865444444557999999999999999999999999999997644
Q ss_pred HHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCC-chhHHHHHHHHHHH
Q 037562 441 DKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNH-EESIKKEVSWIISN 519 (670)
Q Consensus 441 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~-~~~v~~~a~~~L~~ 519 (670)
... ...++++.++.++.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.+.. ++.++..|+++|+|
T Consensus 260 ~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~n 336 (529)
T 1jdh_A 260 KQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 336 (529)
T ss_dssp TCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 221 12378899999999999999999999999999988778888999999999999998631 47999999999999
Q ss_pred hhcCCHH---HHHHHHhcCChHHHHHHhhcCC-hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHH
Q 037562 520 ITCGNRE---QIQAVIDSGLIGPIVNLLQNTE-FDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIV 595 (670)
Q Consensus 520 l~~~~~~---~~~~l~~~~~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~ 595 (670)
++..+++ ....+.+.|+++.|++++.+++ ..++..|+++|.+++.. +.....+.+.|+++.|++++++.+++++
T Consensus 337 l~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~--~~~~~~~~~~~~i~~L~~ll~~~~~~v~ 414 (529)
T 1jdh_A 337 LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQ 414 (529)
T ss_dssp HTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHC
T ss_pred HHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC--hhhhHHHHHcCCHHHHHHHHHHHhHHHH
Confidence 9875433 4567888999999999999876 59999999999999984 3445788899999999999988888888
Q ss_pred HHHHHHHHH----------------------HHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHH
Q 037562 596 TVCLEGLEN----------------------ILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKA 653 (670)
Q Consensus 596 ~~a~~~l~~----------------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a 653 (670)
..+.|++.+ +... ...+..+.+.|+++.|..+..+.+++++..|
T Consensus 415 ~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~--------------~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a 480 (529)
T 1jdh_A 415 RRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD--------------VHNRIVIRGLNTIPLFVQLLYSPIENIQRVA 480 (529)
T ss_dssp -----------CBTTBCHHHHHHHHHHHHHHHTTS--------------HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred HHHhcccCchhhhccccHHHHHHHHHHHHHHHhcC--------------chHHHHHhccCCccHHHHHHcCCchHHHHHH
Confidence 776666654 2211 1134567899999999999999999999999
Q ss_pred HHHHHHhcC
Q 037562 654 VEILETYWS 662 (670)
Q Consensus 654 ~~~l~~~~~ 662 (670)
.+++.++-.
T Consensus 481 ~~~l~~l~~ 489 (529)
T 1jdh_A 481 AGVLCELAQ 489 (529)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhc
Confidence 999888754
No 22
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=289.40 Aligned_cols=345 Identities=17% Similarity=0.165 Sum_probs=286.1
Q ss_pred HhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcCC------------ChHHHHHHHHHHHHHhcCCCCCcHHH
Q 037562 209 YLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSD------------DNSLQLEATTLFINLLSFDRSPPIDE 276 (670)
Q Consensus 209 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~------------~~~~~~~a~~~L~~l~~~~~~~~~~~ 276 (670)
..+++..+....+.+....++ |.+|.|+++++.. ++++++.|+|+|.|++.+. ++..+.
T Consensus 49 ~~~~ll~~~~~~~~~~~~~~~--------g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~ 119 (458)
T 3nmz_A 49 MSRTLLAMSSSQDSCISMRQS--------GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRG 119 (458)
T ss_dssp HHHHHHHHHSSTTHHHHHHHH--------TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHC--------CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHH
Confidence 445555555555543333333 8899999999853 3699999999999999987 777777
Q ss_pred HHHcCCH----------HHHHHhhcCCC-CHH-----HHH-------HHHHHHHHHcCCChhhHHHHHhCCChHHHHHhh
Q 037562 277 VIQSGVV----------PRFVEFLMRQD-YPQ-----LQF-------KAAWALTNIASGTSENTKVVIDHGAVPIFVKLL 333 (670)
Q Consensus 277 ~~~~g~l----------~~L~~ll~~~~-~~~-----v~~-------~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL 333 (670)
..+.+++ +.+++++.+.. ..+ +++ +|+++|.|++. ++++|+.+++.|++++|+.+|
T Consensus 120 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL 198 (458)
T 3nmz_A 120 RREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELL 198 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHH
Confidence 7788887 66777776542 112 555 99999999987 699999999999999999999
Q ss_pred CC-----------CCHHHHHHHHHHHHHhhCCCchhHHHHHh-cCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC--C
Q 037562 334 AS-----------PSVDVRKQTVWALGNVAGDSPRCRDLVLS-QGALIPLLAELNENANLSMLRTATWTLFNFCRGK--P 399 (670)
Q Consensus 334 ~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~--~ 399 (670)
.. .++.++..|+|+|.|++.+++..+..+.. .|++++|+.+| .+.+++++..|+|+|.|++... .
T Consensus 199 ~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~ 277 (458)
T 3nmz_A 199 QVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVN 277 (458)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHH
T ss_pred hhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHH
Confidence 41 34778999999999999888777777754 45599999999 6788999999999999999852 2
Q ss_pred CCChhhhhhhHHHHHHhh-ccCChhHHHHHHHHHHHhccCChHHHHHHH-HcCCHHHHHHhcCCCCcc----chhHHHHH
Q 037562 400 QPPFNQVRPALPVLAQLI-RSNDEEVLTDACWALSYLSDGTNDKVQAVI-EAGVYPRLVELLGHSSSS----VLTPALRT 473 (670)
Q Consensus 400 ~~~~~~~~~~i~~L~~lL-~~~~~~v~~~al~~L~~l~~~~~~~~~~~~-~~~~i~~L~~lL~~~~~~----v~~~a~~~ 473 (670)
++......|++|.|+.+| .+.++.++..++.+|+|++...++....+. ..|+++.|+.+|.+++.. ++..|+++
T Consensus 278 ~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~a 357 (458)
T 3nmz_A 278 SKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGI 357 (458)
T ss_dssp HHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHH
Confidence 333444579999999975 567899999999999999984544444555 789999999999987653 89999999
Q ss_pred HHHhhc---CCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChh
Q 037562 474 IRNIVK---GDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFD 550 (670)
Q Consensus 474 L~~l~~---~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 550 (670)
|.|++. .+++..+.+.+.|+++.|+.+|.++ +..++++|+|+|+|++.++++++..+++.|+++.|++++.+++..
T Consensus 358 L~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~ 436 (458)
T 3nmz_A 358 LRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKM 436 (458)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHH
T ss_pred HHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHH
Confidence 999997 6778888889999999999999998 999999999999999988899999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC
Q 037562 551 TKKEAAWAISNATKF 565 (670)
Q Consensus 551 v~~~a~~aL~~l~~~ 565 (670)
+++.|+++|.|++..
T Consensus 437 v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 437 IAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999999986
No 23
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.3e-32 Score=303.07 Aligned_cols=433 Identities=17% Similarity=0.173 Sum_probs=362.4
Q ss_pred hhhhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcC-CChHHHHHHHHHHHHHhcCCCCCcHHHHHHc
Q 037562 202 NTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWS-DDNSLQLEATTLFINLLSFDRSPPIDEVIQS 280 (670)
Q Consensus 202 ~~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 280 (670)
+..++..+...+.++..+...+..... ..+.++.+++.+.+ ++++++..|+.+|.+++.. .+....+.+.
T Consensus 27 ~~~vr~~A~~~L~~La~~~~~~~~i~~-------~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~ 97 (644)
T 2z6h_A 27 DQVVVNKAAVMVHQLSKKEASRHAIMR-------SPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKS 97 (644)
T ss_dssp CHHHHHHHHHHHHHHHTSTTHHHHHTT-------CHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHCCChhHHHHHh-------ccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHc
Confidence 557888888888888877653322211 12568999999985 4899999999999998765 4577888899
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 037562 281 GVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRD 360 (670)
Q Consensus 281 g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 360 (670)
|+++.|++++++++ +.++..|+++|.+++...+..+..+.+.|+++.|+.+++++++.++..++.+|.+++..+++.+.
T Consensus 98 g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~ 176 (644)
T 2z6h_A 98 GGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 176 (644)
T ss_dssp THHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHH
Confidence 99999999999998 89999999999999986678888888999999999999999999999999999999988888899
Q ss_pred HHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCh
Q 037562 361 LVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTN 440 (670)
Q Consensus 361 ~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~ 440 (670)
.+.+.|+++.|+.++.......++..++.+|.+++............++++.++.++.+++..++..++++|.+++....
T Consensus 177 ~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~ 256 (644)
T 2z6h_A 177 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT 256 (644)
T ss_dssp HHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCT
T ss_pred HHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcch
Confidence 99999999999999976666788889999999999865555555557899999999999999999999999999996543
Q ss_pred HHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCC-chhHHHHHHHHHHH
Q 037562 441 DKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNH-EESIKKEVSWIISN 519 (670)
Q Consensus 441 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~-~~~v~~~a~~~L~~ 519 (670)
.. ....++++.|+.++.++++.++..|+++|++++.+.+.....+.+.|+++.|+.++.+.. .+.++..|+++|+|
T Consensus 257 ~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~n 333 (644)
T 2z6h_A 257 KQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 333 (644)
T ss_dssp TC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHH
Confidence 21 111268899999999999999999999999999987777888889999999999998742 37999999999999
Q ss_pred hhcCCH---HHHHHHHhcCChHHHHHHhhcCC-hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCC----
Q 037562 520 ITCGNR---EQIQAVIDSGLIGPIVNLLQNTE-FDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCAD---- 591 (670)
Q Consensus 520 l~~~~~---~~~~~l~~~~~i~~L~~ll~~~~-~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~---- 591 (670)
++...+ .....+.+.|+++.|++++.+++ ..++..|+++|.|++.. +.....+.+.|+++.|++++.+.+
T Consensus 334 L~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~--~~~~~~i~~~~~i~~Lv~lL~~~~~~vr 411 (644)
T 2z6h_A 334 LTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQ 411 (644)
T ss_dssp HTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHT
T ss_pred HhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccC--HHHHHHHHHcCCHHHHHHHHhccchhhh
Confidence 987433 23344778899999999999765 69999999999999985 344588889999999999997644
Q ss_pred ------------------hHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHH
Q 037562 592 ------------------PKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKA 653 (670)
Q Consensus 592 ------------------~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a 653 (670)
.+++..++.+|.+++.... .+..+.+.|+++.|..+..+.+++++..|
T Consensus 412 ~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~~--------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a 477 (644)
T 2z6h_A 412 RRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVH--------------NRIVIRGLNTIPLFVQLLYSPIENIQRVA 477 (644)
T ss_dssp TC----------CCSSCHHHHHHHHHHHHHHHTTSHH--------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHH
T ss_pred hHhhhccccchhcccccHHHHHHHHHHHHHHHhcCHH--------------HHHHHHhCCcHHHHHHHHcCCCHHHHHHH
Confidence 3456667777777664331 25578899999999999999999999999
Q ss_pred HHHHHHhcCC
Q 037562 654 VEILETYWSS 663 (670)
Q Consensus 654 ~~~l~~~~~~ 663 (670)
.+++.++..+
T Consensus 478 ~~aL~~l~~~ 487 (644)
T 2z6h_A 478 AGVLCELAQD 487 (644)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHHcC
Confidence 9998887654
No 24
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=100.00 E-value=5.2e-32 Score=302.23 Aligned_cols=433 Identities=17% Similarity=0.183 Sum_probs=355.4
Q ss_pred hhhhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcC-CChHHHHHHHHHHHHHhcCCCCCcHHHHHHc
Q 037562 202 NTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWS-DDNSLQLEATTLFINLLSFDRSPPIDEVIQS 280 (670)
Q Consensus 202 ~~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 280 (670)
+..+|..+...+.++..+......... ..+.++.|++.|.+ ++++++..|+.+|.+++.. .+....+.+.
T Consensus 163 d~~vr~~A~~~L~~L~~~~~~~~~i~~-------~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~ 233 (780)
T 2z6g_A 163 DQVVVNKAAVMVHQLSKKEASRHAIMR-------SPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKS 233 (780)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHHHHHTT-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHhCCChhHHHHHh-------ccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHc
Confidence 345666666666666654432211111 12568999999974 5899999999999998765 4557788899
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 037562 281 GVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRD 360 (670)
Q Consensus 281 g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 360 (670)
|+++.|+++|++++ +.++..|+++|.+++...+..+..+.+.|+++.|+.++.+++..++..++.+|.+++..+++.+.
T Consensus 234 g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~ 312 (780)
T 2z6g_A 234 GGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 312 (780)
T ss_dssp THHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHH
Confidence 99999999999998 89999999999999987778888888999999999999999999999999999999988888899
Q ss_pred HHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCh
Q 037562 361 LVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTN 440 (670)
Q Consensus 361 ~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~ 440 (670)
.+.+.|+++.|+.++........+..++.+|.+++............++++.|+.++.+.+..++..++++|.+++....
T Consensus 313 ~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~ 392 (780)
T 2z6g_A 313 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT 392 (780)
T ss_dssp HHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccch
Confidence 99999999999999966666667778999999999765444444557899999999999999999999999999996653
Q ss_pred HHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCc-hhHHHHHHHHHHH
Q 037562 441 DKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHE-ESIKKEVSWIISN 519 (670)
Q Consensus 441 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~-~~v~~~a~~~L~~ 519 (670)
.. ....++++.|+.++.+.++.++..|+++|++++.+.+.....+++.|+++.|+.++.+..+ ..++..|+++|+|
T Consensus 393 ~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~n 469 (780)
T 2z6g_A 393 KQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 469 (780)
T ss_dssp TC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 21 1123688999999999999999999999999999887888888899999999999986423 4899999999999
Q ss_pred hhcCCHH---HHHHHHhcCChHHHHHHhhcCCh-hHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCCh---
Q 037562 520 ITCGNRE---QIQAVIDSGLIGPIVNLLQNTEF-DTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADP--- 592 (670)
Q Consensus 520 l~~~~~~---~~~~l~~~~~i~~L~~ll~~~~~-~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~--- 592 (670)
++...++ ....+.+.++++.|++++.+++. .++..|+++|+|++. .+.....+.+.|+++.|++++.+.+.
T Consensus 470 L~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~ 547 (780)
T 2z6g_A 470 LTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQ 547 (780)
T ss_dssp TTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHS--SHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHHhcchhHH
Confidence 9875433 24467788999999999997775 999999999999998 45566888899999999999976543
Q ss_pred -------------------HHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHH
Q 037562 593 -------------------KIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKA 653 (670)
Q Consensus 593 -------------------~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a 653 (670)
+++..++.+|.++.... ..+..+.+.|+++.|..+..+.+++++..|
T Consensus 548 ~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~--------------~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a 613 (780)
T 2z6g_A 548 RRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI--------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVA 613 (780)
T ss_dssp HTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH--------------HHHHHHHHTCCHHHHHHGGGCSCHHHHHHH
T ss_pred HHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh--------------hhHHHHHHCCcHHHHHHHHcCCCHHHHHHH
Confidence 45566777777765321 134568899999999999999999999999
Q ss_pred HHHHHHhcCC
Q 037562 654 VEILETYWSS 663 (670)
Q Consensus 654 ~~~l~~~~~~ 663 (670)
..++..+..+
T Consensus 614 ~~aL~~L~~~ 623 (780)
T 2z6g_A 614 AGVLCELAQD 623 (780)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHhcC
Confidence 9988877543
No 25
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=6.1e-29 Score=248.14 Aligned_cols=273 Identities=17% Similarity=0.167 Sum_probs=238.6
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC----------CCHHHHHHHHHHHHHHcCCChhhHHHH
Q 037562 251 DNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQ----------DYPQLQFKAAWALTNIASGTSENTKVV 320 (670)
Q Consensus 251 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~----------~~~~v~~~a~~~L~~l~~~~~~~~~~i 320 (670)
+...+.+|+++|.+++.+ .+.++.+++.|+++.|+.+|..+ .++.++..|+++|.+++.+++..+..+
T Consensus 45 ~~~~~~~A~~aL~nls~d--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i 122 (354)
T 3nmw_A 45 VEHQICPAVCVLMKLSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL 122 (354)
T ss_dssp GGGTHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345667899999999776 67889999999999999999521 126899999999999999777788877
Q ss_pred HhC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-CchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC
Q 037562 321 IDH-GAVPIFVKLLASPSVDVRKQTVWALGNVAGD-SPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK 398 (670)
Q Consensus 321 ~~~-~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~ 398 (670)
... |+||.|+.+|+++++++++.|+++|.|++.. ++..+..+.+.|++++|+.+|..+.+..+++.|+++|+|++...
T Consensus 123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~ 202 (354)
T 3nmw_A 123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 202 (354)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccC
Confidence 654 5599999999999999999999999999975 56788999999999999998767778899999999999999854
Q ss_pred -CCCChhh-hhhhHHHHHHhhccCCh----hHHHHHHHHHHHhcc---CChHHHHHHHHcCCHHHHHHhcCCCCccchhH
Q 037562 399 -PQPPFNQ-VRPALPVLAQLIRSNDE----EVLTDACWALSYLSD---GTNDKVQAVIEAGVYPRLVELLGHSSSSVLTP 469 (670)
Q Consensus 399 -~~~~~~~-~~~~i~~L~~lL~~~~~----~v~~~al~~L~~l~~---~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~ 469 (670)
.+..... ..|++|.|+.++.++++ +++..++++|+|++. ..++..+.+.+.|+++.|+.+|.+++..+++.
T Consensus 203 ~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~ 282 (354)
T 3nmw_A 203 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN 282 (354)
T ss_dssp HHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHH
T ss_pred hhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHH
Confidence 3333333 47999999999987654 599999999999996 56778888999999999999999999999999
Q ss_pred HHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHH
Q 037562 470 ALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNRE 526 (670)
Q Consensus 470 a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~ 526 (670)
|+++|+|++.++++....+.+.|+++.|+.++.++ ++.+++.|+|+|.|++...+.
T Consensus 283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHH
Confidence 99999999988888888899999999999999999 999999999999999986554
No 26
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.96 E-value=2.8e-28 Score=243.29 Aligned_cols=275 Identities=18% Similarity=0.179 Sum_probs=237.5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc----------cCChhHHHHHHHHHHhhhcCCCCCChh
Q 037562 335 SPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE----------NANLSMLRTATWTLFNFCRGKPQPPFN 404 (670)
Q Consensus 335 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~ 404 (670)
.+....+..|+++|+|++.+ +++|+.+.+.|++++|+.++.. ..++.+++.|+|+|.|++..++.....
T Consensus 43 ~~~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~ 121 (354)
T 3nmw_A 43 APVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT 121 (354)
T ss_dssp CGGGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred CcchHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34456667899999999977 7899999999999999999942 124678999999999999876433333
Q ss_pred h--hhhhHHHHHHhhccCChhHHHHHHHHHHHhccC-ChHHHHHHHHcCCHHHHHHhc-CCCCccchhHHHHHHHHhhcC
Q 037562 405 Q--VRPALPVLAQLIRSNDEEVLTDACWALSYLSDG-TNDKVQAVIEAGVYPRLVELL-GHSSSSVLTPALRTIRNIVKG 480 (670)
Q Consensus 405 ~--~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~-~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~ 480 (670)
+ ..|++|.|+.+|++++++++..++++|+|++.. ++.....+.+.|+++.|+.+| ++++..+++.|+.+|+|++..
T Consensus 122 i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~ 201 (354)
T 3nmw_A 122 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 201 (354)
T ss_dssp HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence 3 356699999999999999999999999999975 456677788999999999975 667888999999999999986
Q ss_pred CchhhHHHH-hCCChHHHHHhhccCCch---hHHHHHHHHHHHhhc---CCHHHHHHHHhcCChHHHHHHhhcCChhHHH
Q 037562 481 DDFQTQCII-NCGALPYFLDMLVHNHEE---SIKKEVSWIISNITC---GNREQIQAVIDSGLIGPIVNLLQNTEFDTKK 553 (670)
Q Consensus 481 ~~~~~~~l~-~~~~~~~L~~~l~~~~~~---~v~~~a~~~L~~l~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 553 (670)
.++....+. ..|+++.|+.++.+..+. ++++.|+|+|.|++. +++++++.+.+.|+++.|+.++.+++.++++
T Consensus 202 ~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~ 281 (354)
T 3nmw_A 202 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS 281 (354)
T ss_dssp CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHH
T ss_pred ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHH
Confidence 655555566 789999999999877222 599999999999987 6888999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhh
Q 037562 554 EAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVA 611 (670)
Q Consensus 554 ~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~ 611 (670)
+|+++|.|++.. ++++...+.+.|+++.|+++++++++.++..|.++|.+++...+.
T Consensus 282 ~A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~ 338 (354)
T 3nmw_A 282 NACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA 338 (354)
T ss_dssp HHHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence 999999999965 788999999999999999999999999999999999999976443
No 27
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=3.4e-25 Score=214.35 Aligned_cols=240 Identities=28% Similarity=0.428 Sum_probs=221.9
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 037562 281 GVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRD 360 (670)
Q Consensus 281 g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 360 (670)
|.++.|++++.+++ ++++..|+++|.+++..+++.+..+++.|+++.|+.+++++++.++..|+++|++++.+++..+.
T Consensus 2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 56899999999999 99999999999999998888999999999999999999999999999999999999998888999
Q ss_pred HHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCC-CCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 037562 361 LVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKP-QPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGT 439 (670)
Q Consensus 361 ~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~ 439 (670)
.+.+.|+++.++.++ .+.++.++..++++|.+++...+ ........++++.++++++++++.++..++++|++++...
T Consensus 81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~ 159 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 159 (252)
T ss_dssp HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 67889999999999999996543 3333444789999999999999999999999999999988
Q ss_pred hHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHH
Q 037562 440 NDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISN 519 (670)
Q Consensus 440 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~ 519 (670)
+...+.+.+.|+++.++.++.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++ ++.+++.|+++|+|
T Consensus 160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN 238 (252)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence 88878899999999999999999999999999999999998888888889999999999999998 99999999999999
Q ss_pred hhcC
Q 037562 520 ITCG 523 (670)
Q Consensus 520 l~~~ 523 (670)
++..
T Consensus 239 l~~~ 242 (252)
T 4hxt_A 239 IKSG 242 (252)
T ss_dssp HHHT
T ss_pred HHcC
Confidence 9874
No 28
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.93 E-value=1.1e-24 Score=210.74 Aligned_cols=243 Identities=29% Similarity=0.388 Sum_probs=222.7
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT 317 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 317 (670)
+.++.+++.+++++++++..|+++|.+++... .+....+++.|+++.|++++++++ ++++..|+++|++++..+++.+
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~~ 79 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGP-ASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEAI 79 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCChHHH
Confidence 56899999999999999999999999998874 357788899999999999999998 8999999999999999779999
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562 318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG 397 (670)
Q Consensus 318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 397 (670)
..+.+.|+++.++.+++++++.++..|+++|++++...+..+..+.+.|+++.++.++ .+.++.++..++++|.+++..
T Consensus 80 ~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~~ 158 (252)
T 4hxt_A 80 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASG 158 (252)
T ss_dssp HHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999988888899999999999999999 677899999999999999987
Q ss_pred CCCC-ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHH
Q 037562 398 KPQP-PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN 476 (670)
Q Consensus 398 ~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 476 (670)
.+.. ......++++.++.++.++++.++..++++|++++...+...+.+.+.|+++.++.++.++++.++..|+++|+|
T Consensus 159 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~ 238 (252)
T 4hxt_A 159 PDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALEN 238 (252)
T ss_dssp CHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 5333 344447899999999999999999999999999998888888889999999999999999999999999999999
Q ss_pred hhcCCch
Q 037562 477 IVKGDDF 483 (670)
Q Consensus 477 l~~~~~~ 483 (670)
++...+.
T Consensus 239 l~~~~~~ 245 (252)
T 4hxt_A 239 IKSGGWL 245 (252)
T ss_dssp HHHTCBC
T ss_pred HHcCCCc
Confidence 9986543
No 29
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=3.5e-25 Score=214.08 Aligned_cols=239 Identities=34% Similarity=0.538 Sum_probs=219.7
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 037562 281 GVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRD 360 (670)
Q Consensus 281 g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 360 (670)
..++.++++|.+++ ++++..|+++|.++...+++.+..+++.|+++.|+.+|+++++.++..|+++|++++.+++..+.
T Consensus 12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 36889999999999 89999999999876665788888999999999999999999999999999999999998888999
Q ss_pred HHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCC-ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 037562 361 LVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQP-PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGT 439 (670)
Q Consensus 361 ~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~ 439 (670)
.+.+.|+++.++.++ .+.++.++..|+++|.+++...+.. ......+++|.++.+++++++.++..++++|++++...
T Consensus 91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 169 (252)
T 4db8_A 91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (252)
T ss_dssp HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999999999 6678999999999999999886544 44555789999999999999999999999999999888
Q ss_pred hHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHH
Q 037562 440 NDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISN 519 (670)
Q Consensus 440 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~ 519 (670)
+.....+.+.|+++.++.++.++++.++..|+++|++++..++.....+.+.|+++.|+.++.++ ++.++..|+++|+|
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK 248 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999988888888889999999999999998 99999999999999
Q ss_pred hhc
Q 037562 520 ITC 522 (670)
Q Consensus 520 l~~ 522 (670)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 964
No 30
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.93 E-value=1e-24 Score=210.76 Aligned_cols=239 Identities=36% Similarity=0.554 Sum_probs=216.8
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT 317 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 317 (670)
..++.+++.+++++++++..|+++|.++++.. .+....+++.|+++.|++++++++ ++++..|+++|++++.++++.+
T Consensus 12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~~~ 89 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQI 89 (252)
T ss_dssp CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHHHH
T ss_pred chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHH
Confidence 45899999999999999999999998877753 667788999999999999999999 8999999999999999889999
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562 318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG 397 (670)
Q Consensus 318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 397 (670)
..+++.|+++.++.+++++++.++..|+++|++++.+.+.....+.+.|+++.++.++ .+.++.++..++++|.+++..
T Consensus 90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~ 168 (252)
T 4db8_A 90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASG 168 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999987765548888999999999999 677899999999999999987
Q ss_pred CCCC-ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHH
Q 037562 398 KPQP-PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN 476 (670)
Q Consensus 398 ~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 476 (670)
.+.. ......++++.|+.++.++++.++..++++|++++...+.....+.+.|+++.++.++.++++.++..|+++|++
T Consensus 169 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 169 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248 (252)
T ss_dssp CHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHT
T ss_pred ChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 5332 233347899999999999999999999999999998888888889999999999999999999999999999999
Q ss_pred hhc
Q 037562 477 IVK 479 (670)
Q Consensus 477 l~~ 479 (670)
++.
T Consensus 249 l~~ 251 (252)
T 4db8_A 249 LQS 251 (252)
T ss_dssp TC-
T ss_pred Hhc
Confidence 975
No 31
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.91 E-value=1.3e-23 Score=203.80 Aligned_cols=235 Identities=16% Similarity=0.131 Sum_probs=198.6
Q ss_pred hhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHH-hcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHh
Q 037562 422 EEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVE-LLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDM 500 (670)
Q Consensus 422 ~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~ 500 (670)
.+-+..|+..|.+++... +....+.+.|+++.++. +|.++++.++..|+++|++++.+++.....+++.|+++.|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~~-dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCENM-DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCh-hhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 356788899999998754 45666888999999999 9999999999999999999999988888889999999999999
Q ss_pred hccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCc
Q 037562 501 LVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCV 580 (670)
Q Consensus 501 l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i 580 (670)
|+++.+..+++.|+|+|+|++.+.+...+.+.+.|+++.|+.++.+++..++..|+|+|.+++.. +++....+++.|++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i 211 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMV 211 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCH
Confidence 98643789999999999999999888888899999999999999999999999999999999986 67888999999999
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCC-CHHHHHHHHHHHHH
Q 037562 581 KPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHD-DNGISEKAVEILET 659 (670)
Q Consensus 581 ~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~-~~~v~~~a~~~l~~ 659 (670)
+.|+.++.+++++++..++.+|.+++...+.....+. ...+.+...+++ .+..++.++ +.+++++|..++++
T Consensus 212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~--~~~~~l~~lL~~-----~~~~lq~~e~~~e~~~~~~~il~~ 284 (296)
T 1xqr_A 212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR--EPELGLEELLRH-----RCQLLQQHEEYQEELEFCEKLLQT 284 (296)
T ss_dssp HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH--CGGGCHHHHHHH-----HHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHh--ccHHHHHHHHHH-----HHHHccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999987443221100 011234555543 366677565 78999999999999
Q ss_pred hcCCcc
Q 037562 660 YWSSRV 665 (670)
Q Consensus 660 ~~~~~~ 665 (670)
||.+++
T Consensus 285 ~f~~~~ 290 (296)
T 1xqr_A 285 CFSSPA 290 (296)
T ss_dssp HCC---
T ss_pred HcCCCC
Confidence 996553
No 32
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.90 E-value=7e-23 Score=217.21 Aligned_cols=322 Identities=11% Similarity=0.125 Sum_probs=258.5
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHH-cCCHHHHHHhhcC-CCCHHHHHHHHHHHHHHcCCChh
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQ-SGVVPRFVEFLMR-QDYPQLQFKAAWALTNIASGTSE 315 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~g~l~~L~~ll~~-~~~~~v~~~a~~~L~~l~~~~~~ 315 (670)
...+.+.+.+.+++.+.+..|++.|..++.. .+..+.+++ .|++..|++++++ .+ ..+.+.++.+|.|++...+.
T Consensus 334 ~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~--~~VKe~L~~d~~~L~~Lv~llk~~~d-~s~~Ygal~IL~NLt~~~~~ 410 (778)
T 3opb_A 334 QLSEIFINAISRRIVPKVEMSVEALAYLSLK--ASVKIMIRSNESFTEILLTMIKSQKM-THCLYGLLVIMANLSTLPEE 410 (778)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS--SHHHHHHHHCHHHHHHHHHHHTTTCC-TTHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHhCC--HHHHHHHHhCHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCCcc
Confidence 3466777788777777799999999999654 455555664 4569999999986 55 78999999999999983321
Q ss_pred --------------------------------------hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q 037562 316 --------------------------------------NTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPR 357 (670)
Q Consensus 316 --------------------------------------~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 357 (670)
.+..+++.|+++.|+.+++++++.+++.|+++|.|++.+ +.
T Consensus 411 ~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~ 489 (778)
T 3opb_A 411 XXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KN 489 (778)
T ss_dssp CCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GG
T ss_pred cchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HH
Confidence 456778999999999999999999999999999999965 77
Q ss_pred hHHHHHhcCChHHHHHHhcccCCh--hHHHHHHHHHHhhhcCCC-CCChh--hhhhhHHHHHHhhcc-CCh---------
Q 037562 358 CRDLVLSQGALIPLLAELNENANL--SMLRTATWTLFNFCRGKP-QPPFN--QVRPALPVLAQLIRS-NDE--------- 422 (670)
Q Consensus 358 ~~~~i~~~~~i~~Ll~~l~~~~~~--~~~~~a~~~L~~l~~~~~-~~~~~--~~~~~i~~L~~lL~~-~~~--------- 422 (670)
.|..+.+.|++++|+.++....+. ..+..|+.+|+++..... ...+. ...++++.|+.+|.. ++.
T Consensus 490 ~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~ 569 (778)
T 3opb_A 490 FIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDE 569 (778)
T ss_dssp GHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CC
T ss_pred HHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccc
Confidence 899999999999999999655443 278899999999985431 11100 113899999999983 211
Q ss_pred ----hHHHHHHHHHHHhccCCh----HHHHHHHHc-CCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCC-
Q 037562 423 ----EVLTDACWALSYLSDGTN----DKVQAVIEA-GVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCG- 492 (670)
Q Consensus 423 ----~v~~~al~~L~~l~~~~~----~~~~~~~~~-~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~- 492 (670)
--+..|+.+|.|++..++ +..+.++.. |+++.+..+|.+++..++..|+++++|++.+.....+.+++.+
T Consensus 570 ~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~ 649 (778)
T 3opb_A 570 QIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLEN 649 (778)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSS
T ss_pred cccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcC
Confidence 127789999999998762 334557774 8999999999999999999999999999984433223344322
Q ss_pred -----ChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhc-CChHHHHHHhhc--CChhHHHHHHHHHHHhcC
Q 037562 493 -----ALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDS-GLIGPIVNLLQN--TEFDTKKEAAWAISNATK 564 (670)
Q Consensus 493 -----~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~ 564 (670)
.++.|+.++..+ +.++|+.|+|+|+|++..++...+.+++. ++++.+++++.+ ++.+++..++.++.|++.
T Consensus 650 ~~~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 650 PQSLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred chhhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 377899999988 99999999999999988788888888876 799999999998 899999999999999996
No 33
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.1e-21 Score=208.09 Aligned_cols=400 Identities=12% Similarity=0.116 Sum_probs=298.5
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT 317 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 317 (670)
+..+.+...+.+........|+..+.+.++. ....+..+..+.++.|.+.+++ .+++..|+-+|..+........
T Consensus 255 ~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi--~~~cR~~I~~~~~~~L~~~l~~---~~ir~lAavvL~KL~~~~~~~~ 329 (778)
T 3opb_A 255 GLSKLFKKRVFEEQDLQFTKELLRLLSSACI--DETMRTYITENYLQLLERSLNV---EDVQIYSALVLVKTWSFTKLTC 329 (778)
T ss_dssp THHHHHHHHHHSSCCHHHHHHHHHHHHHHCC--SHHHHHHHHHHHHHHHHHHTTS---GGGHHHHHHHHHHHTGGGTCTT
T ss_pred cHHHHHHHHHhcccchHHHHHHHHHHHHHhC--CcHHHHHHHHhHHHHHHHHhcc---HHHHHHHHHHHHHHhcCCCCCc
Confidence 3356666666554444455666666667676 4556666677788999999865 4889999999999886322111
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhc-CChHHHHHHhcccCChhHHHHHHHHHHhhhc
Q 037562 318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQ-GALIPLLAELNENANLSMLRTATWTLFNFCR 396 (670)
Q Consensus 318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~ 396 (670)
..+. ...+.+.+.+.+++.+-+..|+++|..++.+ +..|+.+.+. +++..|+.++....+..+...++.++.|++.
T Consensus 330 ~si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~ 406 (778)
T 3opb_A 330 INLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLST 406 (778)
T ss_dssp CCHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTC
T ss_pred CcHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC
Confidence 1111 2557788888887777799999999999865 5566666554 5699999999555777899999999999998
Q ss_pred CCCCCC---------------------------------------hhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 037562 397 GKPQPP---------------------------------------FNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSD 437 (670)
Q Consensus 397 ~~~~~~---------------------------------------~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~ 437 (670)
..+... .....|++|.|+.++.++++.++..++++|.+++.
T Consensus 407 ~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~ 486 (778)
T 3opb_A 407 LPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR 486 (778)
T ss_dssp CCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT
T ss_pred CCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 664210 00116899999999999999999999999999996
Q ss_pred CChHHHHHHHHcCCHHHHHHhcCCCCcc---chhHHHHHHHHhhcCCchhhHHHH----hCCChHHHHHhhccCCch---
Q 037562 438 GTNDKVQAVIEAGVYPRLVELLGHSSSS---VLTPALRTIRNIVKGDDFQTQCII----NCGALPYFLDMLVHNHEE--- 507 (670)
Q Consensus 438 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~---v~~~a~~~L~~l~~~~~~~~~~l~----~~~~~~~L~~~l~~~~~~--- 507 (670)
. ......+++.|+++.|+.++.+.... .+..|+.+|++++....... ++ ..|++++|+.+|...+..
T Consensus 487 d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~ 563 (778)
T 3opb_A 487 S-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDN 563 (778)
T ss_dssp S-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSC
T ss_pred C-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHHHcCCCCCcccc
Confidence 6 55667788999999999999987544 79999999999985443221 12 138899999999832111
Q ss_pred ----------hHHHHHHHHHHHhhcCC----HHHHHHHHhc-CChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHH-
Q 037562 508 ----------SIKKEVSWIISNITCGN----REQIQAVIDS-GLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQI- 571 (670)
Q Consensus 508 ----------~v~~~a~~~L~~l~~~~----~~~~~~l~~~-~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~- 571 (670)
.-+.+|+.+|.|++..+ ++.+..+++. |+++.+.+++.+++..+|+.|+++++|++.. ++.+
T Consensus 564 ~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~--~e~i~ 641 (778)
T 3opb_A 564 PLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSH--PLTIA 641 (778)
T ss_dssp C---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS--GGGTG
T ss_pred cccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC--cHHHH
Confidence 12779999999999865 3456777874 9999999999999999999999999999984 4432
Q ss_pred HHHHHc------CCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcC-
Q 037562 572 KHLVRE------GCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSH- 644 (670)
Q Consensus 572 ~~l~~~------~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~- 644 (670)
..+.+. +.++.|+.+++.+|.+++.+|.++|.++....+.. ....+++.++++.+..+..+
T Consensus 642 ~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~i------------a~~ll~~~~gi~~Ll~lL~~~ 709 (778)
T 3opb_A 642 AKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLI------------AKELLTKKELIENAIQVFADQ 709 (778)
T ss_dssp GGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHH------------HHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHH------------HHHHHHccccHHHHHHHHhcc
Confidence 233321 23778999999999999999999999985432221 13344445889998887666
Q ss_pred -CCHHHHHHHHHHHHHhcC
Q 037562 645 -DDNGISEKAVEILETYWS 662 (670)
Q Consensus 645 -~~~~v~~~a~~~l~~~~~ 662 (670)
++++++.++..++..++.
T Consensus 710 ~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 710 IDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp TTCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 899999999999999875
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=1.5e-21 Score=182.79 Aligned_cols=198 Identities=36% Similarity=0.548 Sum_probs=186.0
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhH
Q 037562 407 RPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQ 486 (670)
Q Consensus 407 ~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 486 (670)
.+..+.+..+++++++.++..++++|++++..++.....+.+.|+++.++.+|.++++.++..|+++|++++.+++....
T Consensus 11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 67889999999999999999999999999988888888899999999999999999999999999999999988888888
Q ss_pred HHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCC
Q 037562 487 CIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFG 566 (670)
Q Consensus 487 ~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 566 (670)
.+++.|+++.|+.+++++ ++.++..|+|+|+|++.+++.....+.+.|+++.|++++.+++++++..|+++|.+++..
T Consensus 91 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~- 168 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG- 168 (210)
T ss_dssp HHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-
T ss_pred HHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-
Confidence 899999999999999999 999999999999999998888888999999999999999999999999999999999986
Q ss_pred CHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHH
Q 037562 567 THEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENIL 606 (670)
Q Consensus 567 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~ 606 (670)
+++....+.+.|+++.|++++++++++++..|+++|.++.
T Consensus 169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 5788888999999999999999999999999999999875
No 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.88 E-value=3.1e-21 Score=180.64 Aligned_cols=199 Identities=34% Similarity=0.518 Sum_probs=181.5
Q ss_pred HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh
Q 037562 279 QSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC 358 (670)
Q Consensus 279 ~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 358 (670)
..|..+.|+.++++++ ++++..|+++|.+++.++++.+..+++.|+++.++.+|+++++.++..|+++|+|++.+++..
T Consensus 10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 4578999999999999 899999999999999879999999999999999999999999999999999999999888888
Q ss_pred HHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCC-ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 037562 359 RDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQP-PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSD 437 (670)
Q Consensus 359 ~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~ 437 (670)
+..+.+.|+++.++.++ ++.++.++..|+++|.+++...+.. ......++++.|+.+++++++.++..++++|++++.
T Consensus 89 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 89 IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99999999999999999 7778999999999999999865332 233457899999999999999999999999999999
Q ss_pred CChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 037562 438 GTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVK 479 (670)
Q Consensus 438 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 479 (670)
..+.....+.+.|+++.++.++.++++.++..|+++|.+++.
T Consensus 168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 878888889999999999999999999999999999999975
No 36
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.85 E-value=5e-20 Score=178.61 Aligned_cols=225 Identities=15% Similarity=0.136 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHH
Q 037562 296 PQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAE 374 (670)
Q Consensus 296 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~ 374 (670)
.+-+..|+..|.+++. +.++...+...|+++.++. +|.++++.++..|+|+|++++.+++..++.+++.|++++|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 4678889999999998 6778888999999999999 9999999999999999999999999999999999999999999
Q ss_pred hcccCChhHHHHHHHHHHhhhcCCCCC-ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHH
Q 037562 375 LNENANLSMLRTATWTLFNFCRGKPQP-PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYP 453 (670)
Q Consensus 375 l~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~ 453 (670)
+..+.+..+++.|+|+|++++.+.+.. ......+++|.|+.+|++++..++..++++|++++...++..+.+.+.|+++
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~ 212 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 212 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence 965668899999999999999876433 2334468999999999999999999999999999988888888999999999
Q ss_pred HHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhC--CChHH---HHHhhccCC-chhHHHHHHHHHHHhh
Q 037562 454 RLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINC--GALPY---FLDMLVHNH-EESIKKEVSWIISNIT 521 (670)
Q Consensus 454 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~--~~~~~---L~~~l~~~~-~~~v~~~a~~~L~~l~ 521 (670)
.|+.+|.+++..++..|+++|++++...+......... .+... -.+-++... ..++.+.|..++.++.
T Consensus 213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999998754433322211 11111 122233221 3455566666666554
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.83 E-value=4.8e-20 Score=170.40 Aligned_cols=197 Identities=19% Similarity=0.152 Sum_probs=171.6
Q ss_pred CHHHHHHhhcCCCCH--HHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q 037562 282 VVPRFVEFLMRQDYP--QLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCR 359 (670)
Q Consensus 282 ~l~~L~~ll~~~~~~--~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 359 (670)
.++.++++|.+++ + +++..|++++.+++..+++.+..+++.|+||.|+++|+++++++++.|+++|.||+.++++.+
T Consensus 9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 5899999999988 6 899999999999998789999999999999999999999999999999999999999888999
Q ss_pred HHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhc----------------cCChh
Q 037562 360 DLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIR----------------SNDEE 423 (670)
Q Consensus 360 ~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~----------------~~~~~ 423 (670)
..+.+.|++++|+++|....+.+++++|+.+|+||+..+..+. .+..+++|.|+.++. ..+++
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~-~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~ 166 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKN-LMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD 166 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHH-HHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHH-HHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence 9999999999999999656788999999999999998764433 344578899887652 13679
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHc-CCHHHHHHhcCC------CCccchhHHHHHHHHhhcC
Q 037562 424 VLTDACWALSYLSDGTNDKVQAVIEA-GVYPRLVELLGH------SSSSVLTPALRTIRNIVKG 480 (670)
Q Consensus 424 v~~~al~~L~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~ 480 (670)
++.++..+|+|++..+++..+.+.+. |+++.|+.+++. .+.+.++.|+.+|.||+..
T Consensus 167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 99999999999998776777778775 678999999875 2556889999999999864
No 38
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=167.48 Aligned_cols=196 Identities=19% Similarity=0.203 Sum_probs=165.9
Q ss_pred cHHHHHHHhcCCCh--HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 037562 239 ILPAMVDGVWSDDN--SLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN 316 (670)
Q Consensus 239 ~i~~l~~~l~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~ 316 (670)
.+|.+++.|.++++ +++..|++.+.+++..+ .+....+++.|++|.|+++|++++ +++|+.|+++|.+++.+++++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence 48999999999888 89999999999998654 566788999999999999999988 999999999999999988999
Q ss_pred HHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc---------------ccCC
Q 037562 317 TKVVIDHGAVPIFVKLLA-SPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELN---------------ENAN 380 (670)
Q Consensus 317 ~~~i~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~---------------~~~~ 380 (670)
+..+.+.|+|+.|+++|+ +++.++++.|+.+|+|++... ..+..+.+. ++++|+.++. ...+
T Consensus 87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~-~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~ 164 (233)
T 3tt9_A 87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND-KLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLD 164 (233)
T ss_dssp HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG-GGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh-hhHHHHHhc-cHHHHHHHHhccccCCcccccccccccch
Confidence 999999999999999998 579999999999999999764 457777664 6899887652 1136
Q ss_pred hhHHHHHHHHHHhhhcCCC-CCChhhh-hhhHHHHHHhhcc------CChhHHHHHHHHHHHhccC
Q 037562 381 LSMLRTATWTLFNFCRGKP-QPPFNQV-RPALPVLAQLIRS------NDEEVLTDACWALSYLSDG 438 (670)
Q Consensus 381 ~~~~~~a~~~L~~l~~~~~-~~~~~~~-~~~i~~L~~lL~~------~~~~v~~~al~~L~~l~~~ 438 (670)
+.++++|+++|.|++..++ .+..... .|+++.|+.+++. .+...++.++.+|+||+..
T Consensus 165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 6899999999999998653 3333332 5788999999984 2568999999999999864
No 39
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.78 E-value=2e-17 Score=180.84 Aligned_cols=383 Identities=13% Similarity=0.165 Sum_probs=283.7
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT 317 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 317 (670)
..+|.+...+.++++.++..|+.+|..++... . .......++|.+..++++++ ..+|..|+.+|+.++.....
T Consensus 203 ~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~--~--~~~~~~~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~-- 275 (588)
T 1b3u_A 203 EIIPMFSNLASDEQDSVRLLAVEACVNIAQLL--P--QEDLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP-- 275 (588)
T ss_dssp THHHHHHHHHTCSCHHHHTTHHHHHHHHHHHS--C--HHHHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH--
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhC--C--HHHHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc--
Confidence 44788888888899999999999999987653 1 11233457888889988888 79999999999999862111
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch-hHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhc
Q 037562 318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPR-CRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCR 396 (670)
Q Consensus 318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~ 396 (670)
......+++.+..+++++++.+|..|+.+|+.++...+. .+........++.+..++ ++.++.++..+++++..++.
T Consensus 276 -~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~ 353 (588)
T 1b3u_A 276 -EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSP 353 (588)
T ss_dssp -HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHH
T ss_pred -ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence 122335689999999999999999999999999854322 111111223566777777 77889999999999999885
Q ss_pred CCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHH
Q 037562 397 GKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN 476 (670)
Q Consensus 397 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 476 (670)
.-.. ......++|.+..++++++++++..++.+++.+....... .....+++.+..++.+.++.+|..++.+++.
T Consensus 354 ~~~~--~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~ 428 (588)
T 1b3u_A 354 ILGK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPL 428 (588)
T ss_dssp HHCH--HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HhhH--hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 4211 1223567889999999999999999999988887432211 1223577888888999999999999999999
Q ss_pred hhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHH
Q 037562 477 IVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAA 556 (670)
Q Consensus 477 l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 556 (670)
++...... .+...+++.+...+.+. +..+|..|+.+++.++...... .....++|.+..++.+++..+|..++
T Consensus 429 l~~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~~~~~~~~R~~a~ 501 (588)
T 1b3u_A 429 LAGQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKE---WAHATIIPKVLAMSGDPNYLHRMTTL 501 (588)
T ss_dssp HHHHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTTTCSCHHHHHHHH
T ss_pred HHHHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 97532111 12224678888999888 8999999999999997631111 12345888888888888999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHH
Q 037562 557 WAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLE 636 (670)
Q Consensus 557 ~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 636 (670)
.+++.++....++ .....+++.|..++++++++||..+++++..+....... .+ ....++
T Consensus 502 ~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---------------~~-~~~~~p 561 (588)
T 1b3u_A 502 FCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS---------------TL-QSEVKP 561 (588)
T ss_dssp HHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH---------------HH-HHHHHH
T ss_pred HHHHHHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh---------------hh-HHHHHH
Confidence 9999998642211 123458899999999999999999999999988543211 11 133467
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562 637 KIENLQSHDDNGISEKAVEILETYW 661 (670)
Q Consensus 637 ~l~~L~~~~~~~v~~~a~~~l~~~~ 661 (670)
.|..+..+.+.+|+..|..++..+-
T Consensus 562 ~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 562 ILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhh
Confidence 7788889999999999999998653
No 40
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.75 E-value=2.6e-16 Score=172.01 Aligned_cols=381 Identities=10% Similarity=0.073 Sum_probs=285.8
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562 239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK 318 (670)
Q Consensus 239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 318 (670)
.++.+.+.++++++.++..|+.++..++... . .......++|.+..++++++ +.+|..|+.+++.++...+..
T Consensus 165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~--~--~~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~-- 237 (588)
T 1b3u_A 165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVL--E--LDNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE-- 237 (588)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTS--C--HHHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH--
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--c--HHhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH--
Confidence 4677777778899999999999999997753 1 12234567889999998888 899999999999988632221
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC
Q 037562 319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK 398 (670)
Q Consensus 319 ~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~ 398 (670)
.....+++.+..++.+++..+|..++.+|+.++...+. .......++.++.++ .+.++.++..+++++..++...
T Consensus 238 -~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~ 312 (588)
T 1b3u_A 238 -DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENL 312 (588)
T ss_dssp -HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTS
T ss_pred -HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHh
Confidence 12234788888999999999999999999999843211 112234578888888 6788899999999999999765
Q ss_pred CCCCh--hhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHH
Q 037562 399 PQPPF--NQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN 476 (670)
Q Consensus 399 ~~~~~--~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 476 (670)
+.... .....++|.+..++++.++.+|..++++++.++...... .....+++.+..+++++++.+|..++.+++.
T Consensus 313 ~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~ 389 (588)
T 1b3u_A 313 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLDC 389 (588)
T ss_dssp CTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHH
T ss_pred ChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 43221 345678899999999999999999999999987432211 1223578889999999989999999999998
Q ss_pred hhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcC-CHHHHHHHHhcCChHHHHHHhhcCChhHHHHH
Q 037562 477 IVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCG-NREQIQAVIDSGLIGPIVNLLQNTEFDTKKEA 555 (670)
Q Consensus 477 l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a 555 (670)
+....... .....+++.+..++.+. +..+|..++.++..++.. .++ .....+++.+...+.+++..+|..|
T Consensus 390 l~~~~~~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a 461 (588)
T 1b3u_A 390 VNEVIGIR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAA 461 (588)
T ss_dssp HHHHSCHH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHH
T ss_pred HHHhcCHH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 87633211 11234678888888887 999999999999998752 111 1122367888888888899999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchH
Q 037562 556 AWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGL 635 (670)
Q Consensus 556 ~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 635 (670)
+.+++.++....++. ....+++.|..+.++++..+|..++.++..+........ + ....+
T Consensus 462 ~~~l~~l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~-----------~-----~~~~~ 521 (588)
T 1b3u_A 462 TSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDI-----------T-----TKHML 521 (588)
T ss_dssp HHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH-----------H-----HHHTH
T ss_pred HHHHHHHHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH-----------H-----HHHHH
Confidence 999999987433321 223478889999999999999999999999876533211 1 22346
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 037562 636 EKIENLQSHDDNGISEKAVEILETYWS 662 (670)
Q Consensus 636 ~~l~~L~~~~~~~v~~~a~~~l~~~~~ 662 (670)
+.+..+..+++++|+..+.+.+..++.
T Consensus 522 ~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 548 (588)
T 1b3u_A 522 PTVLRMAGDPVANVRFNVAKSLQKIGP 548 (588)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHhhCCCCCchHHHHHHHHHHHHHH
Confidence 777788888999999999999988764
No 41
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.73 E-value=7.1e-15 Score=151.96 Aligned_cols=412 Identities=14% Similarity=0.160 Sum_probs=298.6
Q ss_pred hhccHHHHHHHhcC--CChHHHHHHHHHHHHHhcCCCCC----------------cHHHHH-HcCCHHHHHHhhcCCCCH
Q 037562 236 KLEILPAMVDGVWS--DDNSLQLEATTLFINLLSFDRSP----------------PIDEVI-QSGVVPRFVEFLMRQDYP 296 (670)
Q Consensus 236 ~~~~i~~l~~~l~~--~~~~~~~~a~~~L~~l~~~~~~~----------------~~~~~~-~~g~l~~L~~ll~~~~~~ 296 (670)
+-.+++.++..|++ +|.++...++..|.++.+.+..+ ..+.++ +.+.++.|+.+|++.+ -
T Consensus 58 g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f 136 (651)
T 3grl_A 58 GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-F 136 (651)
T ss_dssp HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-H
T ss_pred hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-H
Confidence 34668999999984 67888999999998887654221 112232 4567999999999988 8
Q ss_pred HHHHHHHHHHHHHcCCChh-hHHHHHhC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHH
Q 037562 297 QLQFKAAWALTNIASGTSE-NTKVVIDH-GAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAE 374 (670)
Q Consensus 297 ~v~~~a~~~L~~l~~~~~~-~~~~i~~~-~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~ 374 (670)
.+|..++.+|..++...++ ..+.+... ++++.|+.+|.+..+.+|..++..|.+++.++++.++.+.-.|+++.|+.+
T Consensus 137 ~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~I 216 (651)
T 3grl_A 137 HVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDI 216 (651)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHH
Confidence 9999999999999987776 77777755 999999999999999999999999999999999999999999999999999
Q ss_pred hcccC---ChhHHHHHHHHHHhhhcCCC-CCChhhhhhhHHHHHHhhccCCh------hHHHH---HHHHHHHhccCC--
Q 037562 375 LNENA---NLSMLRTATWTLFNFCRGKP-QPPFNQVRPALPVLAQLIRSNDE------EVLTD---ACWALSYLSDGT-- 439 (670)
Q Consensus 375 l~~~~---~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~i~~L~~lL~~~~~------~v~~~---al~~L~~l~~~~-- 439 (670)
+.... ...+...++.++.||.+.++ +.......+++|.|.++++.+++ ....+ ++.++.-+....
T Consensus 217 i~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~ 296 (651)
T 3grl_A 217 ITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNP 296 (651)
T ss_dssp HHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSC
T ss_pred HHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 95443 23677899999999999874 44455557899999999975432 23333 566666666442
Q ss_pred ----hHHHHHHHHcCCHHHHHHhcCCC--CccchhHHHHHHHHhhcCCchhhHHHHhCC---------ChHHHHHhhccC
Q 037562 440 ----NDKVQAVIEAGVYPRLVELLGHS--SSSVLTPALRTIRNIVKGDDFQTQCIINCG---------ALPYFLDMLVHN 504 (670)
Q Consensus 440 ----~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~---------~~~~L~~~l~~~ 504 (670)
..+...+.+.|+++.++.++... ...++..|+.+++.+..+++.....+.+.. ++..|+.++.+.
T Consensus 297 ~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~ 376 (651)
T 3grl_A 297 PGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNER 376 (651)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTT
T ss_pred CCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhccc
Confidence 23455688999999999998875 456889999999999999988777766432 333355556666
Q ss_pred CchhHHHHHHHHHHHhhcCCHHHHHHHHhc----------CCh---HHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHH
Q 037562 505 HEESIKKEVSWIISNITCGNREQIQAVIDS----------GLI---GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQI 571 (670)
Q Consensus 505 ~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~----------~~i---~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~ 571 (670)
+...+|.+|+.++..+..++++....+... +.+ ..+...+.+.|+.-.-.|+.++.++... +++..
T Consensus 377 ~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~-n~~~K 455 (651)
T 3grl_A 377 QPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQE-NATQK 455 (651)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT-CHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcC-CHHHH
Confidence 578899999999999988877655555432 111 1234445556665556688888998886 55444
Q ss_pred HHHHH--------cCC---cHHHHhhc-cCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHH
Q 037562 572 KHLVR--------EGC---VKPLCDLL-LCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIE 639 (670)
Q Consensus 572 ~~l~~--------~~~---i~~L~~ll-~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~ 639 (670)
..+.. +.. ++.+..++ .+.++.++..-+..|..++..+.. ...+++.+...++.|.
T Consensus 456 ~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~------------AV~dFL~~~s~l~~L~ 523 (651)
T 3grl_A 456 EQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPI------------AVTHFLHNSANVPFLT 523 (651)
T ss_dssp HHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHH------------HHHHHHHSTTHHHHHH
T ss_pred HHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChH------------HHHHHHcCCchHHHHH
Confidence 44333 111 33345544 345667777777777777765443 4577887777788876
Q ss_pred Hhh-cC-C--CHHHHHHHHHHHHHhc
Q 037562 640 NLQ-SH-D--DNGISEKAVEILETYW 661 (670)
Q Consensus 640 ~L~-~~-~--~~~v~~~a~~~l~~~~ 661 (670)
+.. ++ . +.-|+-.+.-++.-.|
T Consensus 524 ~~i~~~~~~~~~lvqGL~a~LLGi~y 549 (651)
T 3grl_A 524 GQIAENLGEEEQLVQGLCALLLGISI 549 (651)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCcchHHHHHHHHHHHHHHh
Confidence 543 32 2 2347888888777654
No 42
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.73 E-value=6.3e-17 Score=184.39 Aligned_cols=386 Identities=13% Similarity=0.148 Sum_probs=269.9
Q ss_pred hhhhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcC
Q 037562 202 NTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSG 281 (670)
Q Consensus 202 ~~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g 281 (670)
+..+|+.+.-.+++.+...-.. ..+. .....-..+++.+.++++.++..++.++..++..+..... .+
T Consensus 61 ~~~vR~~a~~~Lkn~i~~~w~~--~~~~-----~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~w-----p~ 128 (852)
T 4fdd_A 61 DEPTRSLSGLILKNNVKAHFQN--FPNG-----VTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNW-----PD 128 (852)
T ss_dssp CHHHHHHHHHHHHHHTTTSGGG--CCHH-----HHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTC-----TT
T ss_pred ChHHHHHHHHHHHHHHHHccCC--CCHH-----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcccc-----HH
Confidence 4567777776666666432111 1100 1112245667777888899999999999999876422221 34
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHH----hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q 037562 282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVI----DHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPR 357 (670)
Q Consensus 282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~----~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 357 (670)
.++.+++.+.+++ +.+++.++.+|+.++...+.....-. -..+++.+++.+.++++.+|..|++++.++....+.
T Consensus 129 ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~ 207 (852)
T 4fdd_A 129 LLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ 207 (852)
T ss_dssp HHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH
Confidence 6889999999988 89999999999999873322211100 113567778888889999999999999998865442
Q ss_pred hHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 037562 358 CRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSD 437 (670)
Q Consensus 358 ~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~ 437 (670)
...... ...++.++..+ .+.++.+++.++++|..++...+........++++.+...+++.++.++..++..+..++.
T Consensus 208 ~~~~~~-~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~ 285 (852)
T 4fdd_A 208 ALMLHI-DSFIENLFALA-GDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAE 285 (852)
T ss_dssp HHHTSH-HHHHHHHHHHH-TCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHH-HHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence 111000 12466777776 6778899999999999999865432222345788888899999999999999999999986
Q ss_pred CChHHHHHHHHc---CCHHHHHHhc-----------CC-----------CCccchhHHHHHHHHhhcCCchhhHHHHhCC
Q 037562 438 GTNDKVQAVIEA---GVYPRLVELL-----------GH-----------SSSSVLTPALRTIRNIVKGDDFQTQCIINCG 492 (670)
Q Consensus 438 ~~~~~~~~~~~~---~~i~~L~~lL-----------~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~ 492 (670)
.... ...... .+++.++..+ .+ .++.+|..|+.++..++...++. ++ ..
T Consensus 286 ~~~~--~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~ 359 (852)
T 4fdd_A 286 QPIC--KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PH 359 (852)
T ss_dssp STTH--HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GH-HH
T ss_pred chhH--HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HH
Confidence 5321 112221 4556666666 33 34568999999999998644321 22 24
Q ss_pred ChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHH
Q 037562 493 ALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIK 572 (670)
Q Consensus 493 ~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~ 572 (670)
+++.+...+.+. ++.+|..|++++++++.+..+...... .++++.++..+.++++.||..|++++++++....+....
T Consensus 360 l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~ 437 (852)
T 4fdd_A 360 ILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPD 437 (852)
T ss_dssp HHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTT
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHH
Confidence 678888888888 999999999999999987665443322 457899999999999999999999999988631110000
Q ss_pred HHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhh
Q 037562 573 HLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVA 611 (670)
Q Consensus 573 ~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~ 611 (670)
. .-.++++.|+..+.+.++.++..+++++.++++....
T Consensus 438 ~-~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~ 475 (852)
T 4fdd_A 438 T-YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT 475 (852)
T ss_dssp T-THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG
T ss_pred H-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhH
Confidence 0 1123678888888889999999999999999876543
No 43
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.71 E-value=2.5e-16 Score=179.46 Aligned_cols=391 Identities=12% Similarity=0.103 Sum_probs=272.9
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHH
Q 037562 242 AMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVI 321 (670)
Q Consensus 242 ~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 321 (670)
.++..+.+.++.+|..|+-.|.+..... -.....-....+-+.+++.+.+++ +.+|..++.+++.++..+... .
T Consensus 52 ~il~~~~~~~~~vR~~a~~~Lkn~i~~~-w~~~~~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~----~ 125 (852)
T 4fdd_A 52 FVLTKLKSEDEPTRSLSGLILKNNVKAH-FQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQ----N 125 (852)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHHTTTS-GGGCCHHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTT----T
T ss_pred HHHhccCCCChHHHHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCcc----c
Confidence 3344335678899999999999887542 111111122334556777788777 899999999999998733111 1
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHH----hcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562 322 DHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVL----SQGALIPLLAELNENANLSMLRTATWTLFNFCRG 397 (670)
Q Consensus 322 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~----~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 397 (670)
-.+.++.++..+.++++.+++.++.+|+.++...+.....-. -...++.+++.+ .+.++.++..|++++.++...
T Consensus 126 wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~A~~aL~~~~~~ 204 (852)
T 4fdd_A 126 WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF-KHSSPKIRSHAVACVNQFIIS 204 (852)
T ss_dssp CTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT-TCSSHHHHHHHHHHHHTTTTT
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhc
Confidence 246789999999999999999999999999854433211000 012355566666 577889999999999988865
Q ss_pred CCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHh
Q 037562 398 KPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477 (670)
Q Consensus 398 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 477 (670)
.+..........++.+..++.++++.++..+++++..++...+......++ ++++.+...+++.++.++..|+.++..+
T Consensus 205 ~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l 283 (852)
T 4fdd_A 205 RTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTL 283 (852)
T ss_dssp TCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 432222223578888999999999999999999999999766655443333 5788888899998899999999999999
Q ss_pred hcCCchhhHHHHhC---CChHHHHHhh-----------cc--C--------CchhHHHHHHHHHHHhhcCCHHHHHHHHh
Q 037562 478 VKGDDFQTQCIINC---GALPYFLDML-----------VH--N--------HEESIKKEVSWIISNITCGNREQIQAVID 533 (670)
Q Consensus 478 ~~~~~~~~~~l~~~---~~~~~L~~~l-----------~~--~--------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~ 533 (670)
+.... ....+.. .+++.++..+ .+ . .+..+|..|+.++..++...++. ++
T Consensus 284 ~~~~~--~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~- 357 (852)
T 4fdd_A 284 AEQPI--CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL- 357 (852)
T ss_dssp TTSTT--HHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GH-
T ss_pred hcchh--HHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HH-
Confidence 86431 1112211 3456666666 22 0 13457999999999987632221 11
Q ss_pred cCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhh
Q 037562 534 SGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEM 613 (670)
Q Consensus 534 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~ 613 (670)
..+++.+...+.++++.+|..|++++++++.... +..... -.++++.++.+++++++.|+..++++++++........
T Consensus 358 ~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~-~~~~~~-l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~ 435 (852)
T 4fdd_A 358 PHILPLLKELLFHHEWVVKESGILVLGAIAEGCM-QGMIPY-LPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP 435 (852)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTH-HHHGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSC
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcch-HHHHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccch
Confidence 2357778888888899999999999999998643 322221 23478999999999999999999999999887543211
Q ss_pred ccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562 614 NTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYW 661 (670)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~ 661 (670)
. ..+. .+.++.+.....++++.++..|.+++..+.
T Consensus 436 ~--------~~~~-----~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~ 470 (852)
T 4fdd_A 436 P--------DTYL-----KPLMTELLKRILDSNKRVQEAACSAFATLE 470 (852)
T ss_dssp T--------TTTH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred H--------HHHH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 0 0111 123566666667788999999999988775
No 44
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.70 E-value=2.3e-15 Score=163.12 Aligned_cols=373 Identities=16% Similarity=0.166 Sum_probs=265.3
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT 317 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 317 (670)
..++.+++.+.+++..++..+..++..++... .+ +. .-+++.+.+-+.+++ +.+|..|+++++++.. ++..
T Consensus 49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~e----~~-~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~~--~~~~ 119 (591)
T 2vgl_B 49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-PD----MA-IMAVNSFVKDCEDPN-PLIRALAVRTMGCIRV--DKIT 119 (591)
T ss_dssp GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-HH----HH-HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCCS--GGGH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-ch----HH-HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCCh--HHHH
Confidence 44788889899999999999988888886542 11 11 225678888889888 9999999999999863 4444
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562 318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG 397 (670)
Q Consensus 318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 397 (670)
..+ ++.+.+++.++++.+|..|+.++.+++...++. +.+.+.++.+..++ .+.++.++..|+.+|..++..
T Consensus 120 ~~l-----~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~ 190 (591)
T 2vgl_B 120 EYL-----CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISES 190 (591)
T ss_dssp HHH-----HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTS
T ss_pred HHH-----HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhh
Confidence 433 578999999999999999999999998765542 22234577888888 788999999999999999988
Q ss_pred CCCC-ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHH
Q 037562 398 KPQP-PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN 476 (670)
Q Consensus 398 ~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 476 (670)
.+.. ......+.++.++..+.+.++..+..++.+++.+....+.... .+++.+..++++.++.|+..|++++..
T Consensus 191 ~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~ 265 (591)
T 2vgl_B 191 HPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMK 265 (591)
T ss_dssp CCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHH
T ss_pred CCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 6543 2333456678888888888999999999999998865543322 467788889999999999999999999
Q ss_pred hhcC---CchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHH-----------------H-HH----HH
Q 037562 477 IVKG---DDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNRE-----------------Q-IQ----AV 531 (670)
Q Consensus 477 l~~~---~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~-----------------~-~~----~l 531 (670)
+... +++..+.+. .++.+.|+.++. + ++++|..|+.++..+....++ . +. .+
T Consensus 266 l~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L 342 (591)
T 2vgl_B 266 FLELLPKDSDYYNMLL-KKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIM 342 (591)
T ss_dssp SCCSCCBTTBSHHHHH-HHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHH
T ss_pred HhhccCCCHHHHHHHH-HHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHH
Confidence 8742 233333222 245566666553 5 788888888888887641111 0 01 11
Q ss_pred ---Hhc----CChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHH
Q 037562 532 ---IDS----GLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLEN 604 (670)
Q Consensus 532 ---~~~----~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~ 604 (670)
.+. .+++.|...+.+.+.+++..++++++.++... +..... .++.|++++.+....++..++.++..
T Consensus 343 ~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~-~~~~~~-----~v~~Ll~ll~~~~~~v~~e~i~~l~~ 416 (591)
T 2vgl_B 343 IRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKV-EQSAER-----CVSTLLDLIQTKVNYVVQEAIVVIRD 416 (591)
T ss_dssp HHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC-HHHHHH-----HHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-hhHHHH-----HHHHHHHHHcccchHHHHHHHHHHHH
Confidence 111 24556666677788999999999999999874 333222 57889999998888888888888888
Q ss_pred HHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHH-hhcCCCHHHHHHHHHHHHHh
Q 037562 605 ILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIEN-LQSHDDNGISEKAVEILETY 660 (670)
Q Consensus 605 l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~-L~~~~~~~v~~~a~~~l~~~ 660 (670)
++...+... ..++..|.. +....+++++..+.|++.+|
T Consensus 417 ii~~~p~~~------------------~~~v~~L~~~l~~~~~~~~~~~~~wilGey 455 (591)
T 2vgl_B 417 IFRKYPNKY------------------ESIIATLCENLDSLDEPDARAAMIWIVGEY 455 (591)
T ss_dssp HHHHSCSSC------------------CTTHHHHHHTTTTCCSHHHHHHHHHHHHTT
T ss_pred HHHHCcchH------------------HHHHHHHHHHHHhccCHHHHHHHHHHHHcc
Confidence 876543321 112233322 23345566666666666666
No 45
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.68 E-value=3.9e-14 Score=146.49 Aligned_cols=370 Identities=16% Similarity=0.141 Sum_probs=272.7
Q ss_pred hhccHHHHHHHhc-CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHcCCC
Q 037562 236 KLEILPAMVDGVW-SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQ-DYPQLQFKAAWALTNIASGT 313 (670)
Q Consensus 236 ~~~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~~l~~~~ 313 (670)
.-+.|+.|...+. +.-.+-++.|+..|..++..- ...+..++++.|+..|+.+ ++.++...++.+|.++...+
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y-----~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~ 93 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY-----RLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISND 93 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT-----TTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh-----HHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCC
Confidence 3467899999997 455788999999999885432 2344456899999999764 33788889999998876644
Q ss_pred hh-----------------hHHHH-HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch-hHHHHHhc-CChHHHHH
Q 037562 314 SE-----------------NTKVV-IDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPR-CRDLVLSQ-GALIPLLA 373 (670)
Q Consensus 314 ~~-----------------~~~~i-~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~i~~~-~~i~~Ll~ 373 (670)
++ ..+.+ .+.+.++.|+.+|+..+..+|..++.+|..++...+. .++.+... ++++.|+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~ 173 (651)
T 3grl_A 94 EEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMD 173 (651)
T ss_dssp --------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHG
T ss_pred CcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHH
Confidence 32 22233 3568899999999999999999999999999987776 78888855 88999999
Q ss_pred HhcccCChhHHHHHHHHHHhhhcCCCCCChhhh-hhhHHHHHHhhccCC----hhHHHHHHHHHHHhccCChHHHHHHHH
Q 037562 374 ELNENANLSMLRTATWTLFNFCRGKPQPPFNQV-RPALPVLAQLIRSND----EEVLTDACWALSYLSDGTNDKVQAVIE 448 (670)
Q Consensus 374 ~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~i~~L~~lL~~~~----~~v~~~al~~L~~l~~~~~~~~~~~~~ 448 (670)
+| ++..+.+|..++..|.+++.+++..+..+. .|+++.|+.++..+. ..+...++.++.++...+..+...+.+
T Consensus 174 lL-~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrE 252 (651)
T 3grl_A 174 LL-ADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKE 252 (651)
T ss_dssp GG-GCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HH-hCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99 666788899999999999999855544444 699999999998654 478999999999999999888888999
Q ss_pred cCCHHHHHHhcCCCCcc------chhH---HHHHHHHhhcCC------chhhHHHHhCCChHHHHHhhccCC-chhHHHH
Q 037562 449 AGVYPRLVELLGHSSSS------VLTP---ALRTIRNIVKGD------DFQTQCIINCGALPYFLDMLVHNH-EESIKKE 512 (670)
Q Consensus 449 ~~~i~~L~~lL~~~~~~------v~~~---a~~~L~~l~~~~------~~~~~~l~~~~~~~~L~~~l~~~~-~~~v~~~ 512 (670)
.|+++.|..++..++.. ...+ ++.++.-+.... ......+.+.|+++.++.++.... ...++..
T Consensus 253 t~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~ 332 (651)
T 3grl_A 253 GSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTE 332 (651)
T ss_dssp TTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHH
T ss_pred cCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHH
Confidence 99999999999864332 2223 556666666542 234566789999999999987543 5679999
Q ss_pred HHHHHHHhhcCCHHHHHHHHhcC-----ChHHHHH----Hhhc-CChhHHHHHHHHHHHhcCCCCHHHHHHHHHc-----
Q 037562 513 VSWIISNITCGNREQIQAVIDSG-----LIGPIVN----LLQN-TEFDTKKEAAWAISNATKFGTHEQIKHLVRE----- 577 (670)
Q Consensus 513 a~~~L~~l~~~~~~~~~~l~~~~-----~i~~L~~----ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~----- 577 (670)
|..+++.+..+++.....+.+.. -.|.++. ++.+ ....+|..|+.++...... +++....+...
T Consensus 333 Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~-N~~~Q~~i~~~llp~~ 411 (651)
T 3grl_A 333 TINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYK-NQKGQGEIVSTLLPST 411 (651)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTT-CHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhC-CHHHHHHHHHhcCCcc
Confidence 99999999999998888877543 2233443 3443 4578999999999999886 44444444432
Q ss_pred -----CCcH---HHHhhccCCChHHHHHHHHHHHHHHHhhhhh
Q 037562 578 -----GCVK---PLCDLLLCADPKIVTVCLEGLENILKVGVAE 612 (670)
Q Consensus 578 -----~~i~---~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~ 612 (670)
+.+. .|..-+-+.|+.-.--|..++..++......
T Consensus 412 ~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~ 454 (651)
T 3grl_A 412 IDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQ 454 (651)
T ss_dssp CCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHH
Confidence 0111 2334444456543334556666666655433
No 46
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.66 E-value=8.6e-15 Score=143.26 Aligned_cols=258 Identities=15% Similarity=0.131 Sum_probs=203.2
Q ss_pred HHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch
Q 037562 278 IQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPR 357 (670)
Q Consensus 278 ~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 357 (670)
...+.++.|++.|.+++ +.+|..|+++|+++.. + +.++.++.++.++++.+|..|+++|+.+......
T Consensus 20 ~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~ 87 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC 87 (280)
T ss_dssp HHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred HHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence 34568999999999988 8999999999999973 2 3578999999999999999999999998643322
Q ss_pred hHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 037562 358 CRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSD 437 (670)
Q Consensus 358 ~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~ 437 (670)
... .++.+...+..+.++.++..++++|.++....+ ......++.+..++.++++.++..++.+|+++..
T Consensus 88 ~~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 88 EDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp HHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred chH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence 111 123333333477889999999999999985431 1235678999999999999999999999998763
Q ss_pred CChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHH
Q 037562 438 GTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWII 517 (670)
Q Consensus 438 ~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L 517 (670)
.+.++.|+.++.++++.+|..|+++|+.+....+ .+++.|..++.++ ++.+|..|+++|
T Consensus 158 -----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~aL 216 (280)
T 1oyz_A 158 -----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIGL 216 (280)
T ss_dssp ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 2578999999999999999999999999853222 2567888999988 999999999999
Q ss_pred HHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhcc-CCChHHHH
Q 037562 518 SNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLL-CADPKIVT 596 (670)
Q Consensus 518 ~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~ 596 (670)
+++. ....++.|+..+.++ +++..|+.+|+.+... .+++.|.+++. +.+++++.
T Consensus 217 ~~~~-----------~~~~~~~L~~~l~d~--~vr~~a~~aL~~i~~~------------~~~~~L~~~l~~~~~~~~~~ 271 (280)
T 1oyz_A 217 SYRK-----------DKRVLSVLCDELKKN--TVYDDIIEAAGELGDK------------TLLPVLDTMLYKFDDNEIIT 271 (280)
T ss_dssp HHTT-----------CGGGHHHHHHHHTSS--SCCHHHHHHHHHHCCG------------GGHHHHHHHHTTSSCCHHHH
T ss_pred HHhC-----------CHhhHHHHHHHhcCc--cHHHHHHHHHHhcCch------------hhhHHHHHHHhcCCCcHHHH
Confidence 9985 234778888888764 4899999999998652 36788888885 46777887
Q ss_pred HHHHHHH
Q 037562 597 VCLEGLE 603 (670)
Q Consensus 597 ~a~~~l~ 603 (670)
.++.++.
T Consensus 272 ~~~~~l~ 278 (280)
T 1oyz_A 272 SAIDKLK 278 (280)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 7777764
No 47
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.64 E-value=7.8e-15 Score=158.95 Aligned_cols=373 Identities=13% Similarity=0.144 Sum_probs=225.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 037562 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKV 319 (670)
Q Consensus 240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 319 (670)
++.+.+.+.+.++.++..|+.++.++.... .+.. ...++++.+.++|.+++ +.|+..|+.+|..++..+++....
T Consensus 123 ~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~~---~~~~~~~~l~~lL~d~d-~~V~~~A~~aL~~i~~~~~~~~~~ 197 (591)
T 2vgl_B 123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQMV---EDQGFLDSLRDLIADSN-PMVVANAVAALSEISESHPNSNLL 197 (591)
T ss_dssp HHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-CCCH---HHHHHHHHHHHTTSCSC-HHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHhhC-hhhc---ccccHHHHHHHHhCCCC-hhHHHHHHHHHHHHHhhCCCccch
Confidence 677889999999999999999999998764 3332 23567899999999888 999999999999999865532100
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC-
Q 037562 320 VIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK- 398 (670)
Q Consensus 320 i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~- 398 (670)
....+.+..++..+.+.++-.+...+.+++.++..++.... ..++.+...+ ++.++.++..|++++..+....
T Consensus 198 ~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l-~~~~~~V~~ea~~~i~~l~~~~~ 271 (591)
T 2vgl_B 198 DLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRL-SHANSAVVLSAVKVLMKFLELLP 271 (591)
T ss_dssp CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCS-CSSTTHHHHHHHHHHHHSCCSCC
T ss_pred hccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHH-cCCChHHHHHHHHHHHHHhhccC
Confidence 00112356677777778888888999999988755443222 2456666666 6778899999999999987532
Q ss_pred --CCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHH----------------------HH---Hc--
Q 037562 399 --PQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQA----------------------VI---EA-- 449 (670)
Q Consensus 399 --~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~----------------------~~---~~-- 449 (670)
+.........+.+.++.++ +++++++..++.++..+....++.... +. +.
T Consensus 272 ~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~n 350 (591)
T 2vgl_B 272 KDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQAN 350 (591)
T ss_dssp BTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSST
T ss_pred CCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhh
Confidence 2222222345666777655 478899999999988887432211110 00 00
Q ss_pred --CCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHH
Q 037562 450 --GVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQ 527 (670)
Q Consensus 450 --~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~ 527 (670)
.+++.+..++.+.+..++..++++|+.++...+.... ..++.|++++... ...++.++..++.++....++
T Consensus 351 v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~-~~~v~~e~i~~l~~ii~~~p~- 423 (591)
T 2vgl_B 351 IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTK-VNYVVQEAIVVIRDIFRKYPN- 423 (591)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHSCS-
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHccc-chHHHHHHHHHHHHHHHHCcc-
Confidence 1233333444444455555555555555543322111 2344555555554 445555555555554432222
Q ss_pred HHHHHhcCChHHHHHHhh-cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHH
Q 037562 528 IQAVIDSGLIGPIVNLLQ-NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENIL 606 (670)
Q Consensus 528 ~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~ 606 (670)
....+++.|.+.++ ..+++++..++|+++..+..... .. ..++.+.+-+...++.++..++.++..++
T Consensus 424 ----~~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~--~~-----~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~ 492 (591)
T 2vgl_B 424 ----KYESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN--AD-----ELLESFLEGFHDESTQVQLTLLTAIVKLF 492 (591)
T ss_dssp ----SCCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT--HH-----HHHHHHSTTCSSSCHHHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC--HH-----HHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 12345566666665 34566777777777777654221 01 12344444445567778877777777776
Q ss_pred HhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhh-cCCCHHHHHHHHHHHHH
Q 037562 607 KVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQ-SHDDNGISEKAVEILET 659 (670)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~-~~~~~~v~~~a~~~l~~ 659 (670)
...+... ...+ ...+.... .+.+.+||++|...+.-
T Consensus 493 ~~~p~~~------------~~~i-----~~ll~~~~~d~~d~evrdRA~~y~~l 529 (591)
T 2vgl_B 493 LKKPSET------------QELV-----QQVLSLATQDSDNPDLRDRGYIYWRL 529 (591)
T ss_dssp TTCCSTT------------HHHH-----HHHHHHHHTTCCCHHHHHHHHHHHTT
T ss_pred hcCchHH------------HHHH-----HHHHHHhhhcCCChHHHHHHHHHHHH
Confidence 4322110 0111 12234433 45788999999876553
No 48
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.62 E-value=3.3e-14 Score=139.08 Aligned_cols=255 Identities=12% Similarity=0.082 Sum_probs=199.4
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT 317 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 317 (670)
..++.+++.+.++++.++..|+++|.++.. .+.++.+++++.+++ +.+|..|+++|+.+... +...
T Consensus 23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~-~~~~ 88 (280)
T 1oyz_A 23 LNDDELFRLLDDHNSLKRISSARVLQLRGG------------QDAVRLAIEFCSDKN-YIRRDIGAFILGQIKIC-KKCE 88 (280)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------HHHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCC-TTTH
T ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHccCC------------chHHHHHHHHHcCCC-HHHHHHHHHHHHHhccc-cccc
Confidence 568999999999999999999999998842 125888999999998 89999999999998752 2211
Q ss_pred HHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhc
Q 037562 318 KVVIDHGAVPIFV-KLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCR 396 (670)
Q Consensus 318 ~~i~~~~~i~~L~-~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~ 396 (670)
.. +++.+. .++.++++.++..++++|+++....+.... ..++.++..+ .+.++.++..++++|.++..
T Consensus 89 ~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l-~d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 89 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA-FDKSTNVRRATAFAISVIND 157 (280)
T ss_dssp HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT-TCSCHHHHHHHHHHHHTC--
T ss_pred hH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHh-hCCCHHHHHHHHHHHHhcCC
Confidence 11 233444 245779999999999999999744332222 2477888888 77889999999999998765
Q ss_pred CCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHH
Q 037562 397 GKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN 476 (670)
Q Consensus 397 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 476 (670)
. ..++.|..++.++++.++..++++|+.+....+ .+++.+..++.++++.+|..|+.+|++
T Consensus 158 ~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~ 218 (280)
T 1oyz_A 158 K----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSY 218 (280)
T ss_dssp -----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred H----------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 2 378999999999999999999999999864332 345788899999999999999999998
Q ss_pred hhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh-cCChhHHHHH
Q 037562 477 IVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ-NTEFDTKKEA 555 (670)
Q Consensus 477 l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a 555 (670)
+.. ...++.|...+.++ + ++..|+++++.+.. ..+++.|..++. +.+++++..+
T Consensus 219 ~~~-----------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~-----------~~~~~~L~~~l~~~~~~~~~~~~ 273 (280)
T 1oyz_A 219 RKD-----------KRVLSVLCDELKKN-T--VYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSA 273 (280)
T ss_dssp TTC-----------GGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHH
T ss_pred hCC-----------HhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc-----------hhhhHHHHHHHhcCCCcHHHHHH
Confidence 862 24678889999776 4 89999999999843 246888999887 4567888888
Q ss_pred HHHHHH
Q 037562 556 AWAISN 561 (670)
Q Consensus 556 ~~aL~~ 561 (670)
..++.+
T Consensus 274 ~~~l~~ 279 (280)
T 1oyz_A 274 IDKLKR 279 (280)
T ss_dssp HHHHTC
T ss_pred HHHhhc
Confidence 777653
No 49
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.58 E-value=1.9e-13 Score=148.53 Aligned_cols=327 Identities=15% Similarity=0.108 Sum_probs=242.5
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT 317 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 317 (670)
-.+..+.+.++++++.++..|+++|+++... .+. ..+++.+.+++.+++ +.||..|+.++.++...+++..
T Consensus 107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~-------~~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v 177 (618)
T 1w63_A 107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGSS-------EMC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELM 177 (618)
T ss_dssp HHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH-------HHH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH-------HHH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHH
Confidence 4567888889999999999999999999421 222 236888899999988 9999999999999988666543
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc--------------cCChhH
Q 037562 318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE--------------NANLSM 383 (670)
Q Consensus 318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~--------------~~~~~~ 383 (670)
. +.++.+..++.+.++.++..|+.+|..++..+++....+. ..++.++..|.+ ..++..
T Consensus 178 ~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 250 (618)
T 1w63_A 178 E-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFL 250 (618)
T ss_dssp G-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHH
T ss_pred H-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChH
Confidence 2 5778888999999999999999999999977654322332 467888887743 247788
Q ss_pred HHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhc------cCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHH
Q 037562 384 LRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIR------SNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVE 457 (670)
Q Consensus 384 ~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~------~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 457 (670)
+..++.+|..++..++ .......+.|..++. +.+..+...++.++..+... +. +.. .++..+..
T Consensus 251 q~~il~~L~~l~~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~----l~~-~a~~~L~~ 320 (618)
T 1w63_A 251 QVRILRLLRILGRNDD----DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE-SG----LRV-LAINILGR 320 (618)
T ss_dssp HHHHHHHHHHHTTTCH----HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HH----HHH-HHHHHHHH
T ss_pred HHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC-HH----HHH-HHHHHHHH
Confidence 8889999999987642 122344455555543 23468899999999987642 21 111 35678888
Q ss_pred hcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCCh
Q 037562 458 LLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537 (670)
Q Consensus 458 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i 537 (670)
++.++++.+|..|+.+|+.++...+.. +. .....++..+.++ +..+|..|..++..++.... ... ++
T Consensus 321 ~L~~~d~~vr~~aL~~L~~i~~~~p~~----~~-~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~~n--v~~-----iv 387 (618)
T 1w63_A 321 FLLNNDKNIRYVALTSLLKTVQTDHNA----VQ-RHRSTIVDCLKDL-DVSIKRRAMELSFALVNGNN--IRG-----MM 387 (618)
T ss_dssp HHTCSSTTTHHHHHHHHHHHHHHHHHH----HG-GGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCSSS--THH-----HH
T ss_pred HHhCCCCchHHHHHHHHHHHHhhCHHH----HH-HHHHHHHHHccCC-ChhHHHHHHHHHHHHccccc--HHH-----HH
Confidence 899999999999999999998754432 21 3567888899988 99999999999999976422 122 35
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhh
Q 037562 538 GPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVG 609 (670)
Q Consensus 538 ~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~ 609 (670)
+.+...+.+.+.+++..++.+++.++....+.... .++.|+++++.....++..+...+..++...
T Consensus 388 ~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~------~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~ 453 (618)
T 1w63_A 388 KELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRW------HIDTIMRVLTTAGSYVRDDAVPNLIQLITNS 453 (618)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHH------HHHHHHHHHHHTGGGSCSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHH------HHHHHHHHHHhccchhHHHHHHHHHHHHhcC
Confidence 67788888889999999999999999863222222 3677778887666666666666777776543
No 50
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.54 E-value=5.1e-13 Score=152.83 Aligned_cols=356 Identities=14% Similarity=0.205 Sum_probs=243.3
Q ss_pred ccHHHHHHHhcC-------CChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHc
Q 037562 238 EILPAMVDGVWS-------DDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIA 310 (670)
Q Consensus 238 ~~i~~l~~~l~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~ 310 (670)
..+|.++..+.. ++..++..|..+|..++........ ..+++.+.+.+.+.+ ..+|..|+++++.++
T Consensus 324 ~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~-----~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~ 397 (861)
T 2bpt_A 324 DVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHIL-----EPVLEFVEQNITADN-WRNREAAVMAFGSIM 397 (861)
T ss_dssp HHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGH-----HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHH-----HHHHHHHHHHcCCCC-hhHHHHHHHHHHHHH
Confidence 457888888864 2347888999999888764211111 124666777778888 799999999999999
Q ss_pred CCCh-hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh---HHHHHhcCChHHHHHHhcccCChhHHHH
Q 037562 311 SGTS-ENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC---RDLVLSQGALIPLLAELNENANLSMLRT 386 (670)
Q Consensus 311 ~~~~-~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~---~~~i~~~~~i~~Ll~~l~~~~~~~~~~~ 386 (670)
.+.. +.....+. .+++.++..+.++++.+|..++++++.++...+.. ...+ ...++.++..+ .+. +.++..
T Consensus 398 ~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~l~~l~~~l-~~~-~~v~~~ 472 (861)
T 2bpt_A 398 DGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL--PGVVQACLIGL-QDH-PKVATN 472 (861)
T ss_dssp SSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH--HHHHHHHHHHH-TSC-HHHHHH
T ss_pred cCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH--HHHHHHHHHHh-ccC-hHHHHH
Confidence 7542 33333332 47888999999999999999999999998431110 0111 12467777777 333 889999
Q ss_pred HHHHHHhhhcCCC----CCChhhhhhhHHHHHHhhccCC--hhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcC
Q 037562 387 ATWTLFNFCRGKP----QPPFNQVRPALPVLAQLIRSND--EEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLG 460 (670)
Q Consensus 387 a~~~L~~l~~~~~----~~~~~~~~~~i~~L~~lL~~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~ 460 (670)
+++++.+++.... .........+++.+...+.+.+ +.++..++.+++.++...+......+. .+++.++..+.
T Consensus 473 a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~ 551 (861)
T 2bpt_A 473 CSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLG 551 (861)
T ss_dssp HHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHH
Confidence 9999999987532 1122334677888889988544 789999999999998654433333333 34555555554
Q ss_pred C---------------CCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCch-hHHHHHHHHHHHhhcCC
Q 037562 461 H---------------SSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEE-SIKKEVSWIISNITCGN 524 (670)
Q Consensus 461 ~---------------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~-~v~~~a~~~L~~l~~~~ 524 (670)
. ....++..++.+++.++...+....... ..+++.+...+++. +. .++..+..+++.++...
T Consensus 552 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~ 629 (861)
T 2bpt_A 552 QTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKK-DSAFIEDDVFYAISALAASL 629 (861)
T ss_dssp HHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHH
Confidence 2 1234678899999999875543222122 24677788888877 66 89999999999987632
Q ss_pred HHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCC--hHHHHHHHHHH
Q 037562 525 REQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCAD--PKIVTVCLEGL 602 (670)
Q Consensus 525 ~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~--~~v~~~a~~~l 602 (670)
......... .+++.++..+.+++++++..|+.++..++.........++ ..+++.+.+.+.+++ ++++..++.++
T Consensus 630 ~~~~~~~l~-~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l 706 (861)
T 2bpt_A 630 GKGFEKYLE-TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVF 706 (861)
T ss_dssp GGGGHHHHH-HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHH
T ss_pred hhhHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHH
Confidence 222222222 3788899988888889999999999998865433222222 236777778887654 88999999999
Q ss_pred HHHHHhhh
Q 037562 603 ENILKVGV 610 (670)
Q Consensus 603 ~~l~~~~~ 610 (670)
+.++....
T Consensus 707 ~~l~~~~~ 714 (861)
T 2bpt_A 707 GDIASNIG 714 (861)
T ss_dssp HHHHHHHG
T ss_pred HHHHHHhh
Confidence 99987643
No 51
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.53 E-value=6.8e-13 Score=140.09 Aligned_cols=389 Identities=11% Similarity=0.070 Sum_probs=263.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCC-CCHHHHHHHHHHHHHHcCCChhhHH
Q 037562 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQ-DYPQLQFKAAWALTNIASGTSENTK 318 (670)
Q Consensus 240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~-~~~~v~~~a~~~L~~l~~~~~~~~~ 318 (670)
+..++..+.++|.+++..|-..|.++...+ ..+++..|+.++.+. .++.+|..|+..|.++.........
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~ 73 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK 73 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHH
Confidence 456777777899999999999998764310 123566777877665 2489999999999998753311110
Q ss_pred H-----H------HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccC--ChhHHH
Q 037562 319 V-----V------IDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENA--NLSMLR 385 (670)
Q Consensus 319 ~-----i------~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~--~~~~~~ 385 (670)
. . ....+-..++..+.++++.+ ..++.+++.++...... . .-.+.++.++..+ .+. ++.++.
T Consensus 74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~-~--~w~~ll~~L~~~l-~~~~~~~~~r~ 148 (462)
T 1ibr_B 74 AQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV-N--QWPELIPQLVANV-TNPNSTEHMKE 148 (462)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG-T--CCTTHHHHHHHHH-HCTTCCHHHHH
T ss_pred HHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccc-c--ccHHHHHHHHHHh-ccCCCCHHHHH
Confidence 0 0 01123346777888877788 88999999987432110 0 0124578888888 445 888999
Q ss_pred HHHHHHHhhhcCC-CCCChhhhhhhHHHHHHhhccC--ChhHHHHHHHHHHHhccCChHHHH-HHHHcCCHHHHHHhcCC
Q 037562 386 TATWTLFNFCRGK-PQPPFNQVRPALPVLAQLIRSN--DEEVLTDACWALSYLSDGTNDKVQ-AVIEAGVYPRLVELLGH 461 (670)
Q Consensus 386 ~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~al~~L~~l~~~~~~~~~-~~~~~~~i~~L~~lL~~ 461 (670)
.++.+|..++... +.........+++.+...+.++ ++.++..++.+++++......... .....-+++.+...+.+
T Consensus 149 ~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 228 (462)
T 1ibr_B 149 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC 228 (462)
T ss_dssp HHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence 9999999999753 2222333466888899999887 789999999999997654322111 01111245666777788
Q ss_pred CCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHH---------------
Q 037562 462 SSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNRE--------------- 526 (670)
Q Consensus 462 ~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~--------------- 526 (670)
+++.++..++.++..++...+......+..++++.++..+.+. ++.++..|+..+..++.....
T Consensus 229 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 307 (462)
T 1ibr_B 229 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPP 307 (462)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCc
Confidence 8889999999999999876554332222226777888888887 899999999999888653110
Q ss_pred ------HHHHHHhcCChHHHHHHhhc-------CChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChH
Q 037562 527 ------QIQAVIDSGLIGPIVNLLQN-------TEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPK 593 (670)
Q Consensus 527 ------~~~~l~~~~~i~~L~~ll~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 593 (670)
...... ..++|.++..+.. .+..+|..|+.+|..++......... .+++.+...+.+.+..
T Consensus 308 ~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~-----~~~~~l~~~l~~~~~~ 381 (462)
T 1ibr_B 308 EHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVP-----HVLPFIKEHIKNPDWR 381 (462)
T ss_dssp SCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHH-----HHHHHHHHHTTCSSHH
T ss_pred cchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhcCCChH
Confidence 010011 2356677776643 24578999999999998753322212 3567788888999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 037562 594 IVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYWS 662 (670)
Q Consensus 594 v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~~ 662 (670)
++..++.+++.+........ +...+ ...++.+..+..++++.|+..|.+++.++..
T Consensus 382 ~r~aal~~l~~l~~~~~~~~-----------~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 382 YRDAAVMAFGCILEGPEPSQ-----------LKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp HHHHHHHHHHHTSSSSCTTT-----------TCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHH-----------HHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 99999999999885322110 00011 3457778888889999999999999998853
No 52
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.53 E-value=6.2e-13 Score=152.17 Aligned_cols=398 Identities=12% Similarity=0.119 Sum_probs=261.6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh---
Q 037562 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN--- 316 (670)
Q Consensus 240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~--- 316 (670)
++.+.+.+.+.+...+..|+.++..++...........+ ..+++.++..+.+++ +.+|..++++++.++......
T Consensus 371 ~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~~~~~~ 448 (861)
T 2bpt_A 371 LEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQS-LQVKETTAWCIGRIADSVAESIDP 448 (861)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHGGGSCT
T ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCc-HHHHHHHHHHHHHHHHHhhhhcCC
Confidence 555666677888999999999999997653112222222 247888899998888 899999999999998621110
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-----chhHHHHHhcCChHHHHHHhcc-cCChhHHHHHHHH
Q 037562 317 TKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDS-----PRCRDLVLSQGALIPLLAELNE-NANLSMLRTATWT 390 (670)
Q Consensus 317 ~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-----~~~~~~i~~~~~i~~Ll~~l~~-~~~~~~~~~a~~~ 390 (670)
... -..+++.++..+.++ +.++..|++++.+++... ......+ ...++.++..+.. +.++.++..++.+
T Consensus 449 ~~~--~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~a 523 (861)
T 2bpt_A 449 QQH--LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSA 523 (861)
T ss_dssp TTT--HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHH
Confidence 001 113567888888776 899999999999987431 1121222 1246677777743 2346889999999
Q ss_pred HHhhhcCCCCCChhhhhhhHHHHHHhhccC---------------ChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHH
Q 037562 391 LFNFCRGKPQPPFNQVRPALPVLAQLIRSN---------------DEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRL 455 (670)
Q Consensus 391 L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~---------------~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L 455 (670)
+..++...+..........+|.++..+... ...++..++.++.+++...+.......+ .+++.+
T Consensus 524 l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-~l~~~l 602 (861)
T 2bpt_A 524 LTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD-MLMGLF 602 (861)
T ss_dssp HHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHHHHH
T ss_pred HHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHH
Confidence 999998765443444456777777766531 3457888999998888554432222222 567778
Q ss_pred HHhcCCCCc-cchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhc
Q 037562 456 VELLGHSSS-SVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDS 534 (670)
Q Consensus 456 ~~lL~~~~~-~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~ 534 (670)
...+++.+. .++..++.+++.++..........+ ..+++.+...+++. ++.++..|+.+++.++........... .
T Consensus 603 ~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~ 679 (861)
T 2bpt_A 603 FRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYS-D 679 (861)
T ss_dssp HHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH-H
T ss_pred HHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHhchhccchH-H
Confidence 888888776 8999999999999864433322222 23788888889776 888999999999998864333222222 3
Q ss_pred CChHHHHHHhhcCC--hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCC-----------hHHHHHHHHH
Q 037562 535 GLIGPIVNLLQNTE--FDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCAD-----------PKIVTVCLEG 601 (670)
Q Consensus 535 ~~i~~L~~ll~~~~--~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~-----------~~v~~~a~~~ 601 (670)
.+++.++..+.+++ .+++..++.+++.++.........++- .+++.+.+.++... ..++..++.+
T Consensus 680 ~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~--~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~ 757 (861)
T 2bpt_A 680 AMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN--DIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDA 757 (861)
T ss_dssp HHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH--HHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH
Confidence 46778888887654 889999999999998753333333322 25777777776421 3578888999
Q ss_pred HHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCC----CHHHHHHHHHHHHHhc
Q 037562 602 LENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHD----DNGISEKAVEILETYW 661 (670)
Q Consensus 602 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~----~~~v~~~a~~~l~~~~ 661 (670)
+..++..-..... ....+... .++.+.....+. +.+++..|..++..+.
T Consensus 758 ~~~i~~~l~~~~~------~~~~~~~~-----i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~ 810 (861)
T 2bpt_A 758 YVGIVAGLHDKPE------ALFPYVGT-----IFQFIAQVAEDPQLYSEDATSRAAVGLIGDIA 810 (861)
T ss_dssp HHHHHHHTTTCHH------HHGGGHHH-----HHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHH------HHHHHHHH-----HHHHHHHHHcCcccCCcHHHHHHHHHHHHHHH
Confidence 9888854321000 01111111 234454444432 7889999988887763
No 53
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.52 E-value=5.7e-13 Score=152.75 Aligned_cols=425 Identities=15% Similarity=0.170 Sum_probs=266.4
Q ss_pred hhhhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCCCCcHHHHHH
Q 037562 202 NTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSD--DNSLQLEATTLFINLLSFDRSPPIDEVIQ 279 (670)
Q Consensus 202 ~~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 279 (670)
+..++...++.+..++....... +. ......++.+.+.+.++ +..++..|++++..++.............
T Consensus 143 ~~~~r~~al~~l~~l~~~~~~~~-~~------~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 215 (876)
T 1qgr_A 143 TEHMKESTLEAIGYICQDIDPEQ-LQ------DKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER 215 (876)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHH-HG------GGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCHhh-HH------hHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34577777777777776532110 11 11224467777888766 68899999999998875421000001111
Q ss_pred cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch--
Q 037562 280 SGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPR-- 357 (670)
Q Consensus 280 ~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-- 357 (670)
..+++.+.+.+.+++ ++++..|+.+|..++...++.....+...+++.++..+.+.++.++..|+.++..++.....
T Consensus 216 ~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~ 294 (876)
T 1qgr_A 216 HFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLA 294 (876)
T ss_dssp HHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHh
Confidence 235777777777777 89999999999999875555544445457888888888889999999999999888743100
Q ss_pred --------------------hHHHHHhcCChHHHHHHhcc------cCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHH
Q 037562 358 --------------------CRDLVLSQGALIPLLAELNE------NANLSMLRTATWTLFNFCRGKPQPPFNQVRPALP 411 (670)
Q Consensus 358 --------------------~~~~i~~~~~i~~Ll~~l~~------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~ 411 (670)
.+..+ ...++.++..+.. +.+..++..|..++..++...+. .....+++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~l~ 369 (876)
T 1qgr_A 295 IEASEAAEQGRPPEHTSKFYAKGAL--QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLP 369 (876)
T ss_dssp HHHHHHHHHSSCCSSCCCCHHHHHH--HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGHHHHHH
T ss_pred hhhccccccCCCccchhHHHHHHHH--HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---hhHHHHHH
Confidence 00011 1245666777642 23457888899999888865431 23467788
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhccCCh-HHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhh--HHH
Q 037562 412 VLAQLIRSNDEEVLTDACWALSYLSDGTN-DKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQT--QCI 488 (670)
Q Consensus 412 ~L~~lL~~~~~~v~~~al~~L~~l~~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~--~~l 488 (670)
.+...+.+.+..++..++.+++.++.... +...... ..+++.++..+.++++.+|..|++++++++...+... ...
T Consensus 370 ~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~ 448 (876)
T 1qgr_A 370 FIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY 448 (876)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT
T ss_pred HHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH
Confidence 88888888999999999999999997654 3333333 3588999999999999999999999999997543311 001
Q ss_pred HhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCH--------------HHHHHHHhcCChHHHHHHhhcC---ChhH
Q 037562 489 INCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNR--------------EQIQAVIDSGLIGPIVNLLQNT---EFDT 551 (670)
Q Consensus 489 ~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~--------------~~~~~l~~~~~i~~L~~ll~~~---~~~v 551 (670)
-..+++.++..+.+. +.++..|++++.+++.... +...... ..+++.|+..+... +..+
T Consensus 449 -l~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-~~il~~L~~~l~~~~~~~~~~ 524 (876)
T 1qgr_A 449 -LAPLLQCLIEGLSAE--PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF-ELIVQKLLETTDRPDGHQNNL 524 (876)
T ss_dssp -HHHHHHHHHHHTTSC--HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH-HHHHHHHHHHTTSCSSCSTTH
T ss_pred -HHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH-HHHHHHHHHHHhCcCcchhhH
Confidence 124567777888653 7899999999999975311 0000001 12455555555532 2345
Q ss_pred HHHHHHHHHHhc--------------------------------------------------------CCCC-HHHHHHH
Q 037562 552 KKEAAWAISNAT--------------------------------------------------------KFGT-HEQIKHL 574 (670)
Q Consensus 552 ~~~a~~aL~~l~--------------------------------------------------------~~~~-~~~~~~l 574 (670)
+..+..+++.++ .... .....++
T Consensus 525 r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 604 (876)
T 1qgr_A 525 RSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS 604 (876)
T ss_dssp HHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH
T ss_pred HHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH
Confidence 555555554443 2212 1111111
Q ss_pred HHcCCcHHHHhhccCCC--hHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcC-CCHHHHH
Q 037562 575 VREGCVKPLCDLLLCAD--PKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSH-DDNGISE 651 (670)
Q Consensus 575 ~~~~~i~~L~~ll~~~~--~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~-~~~~v~~ 651 (670)
..+++.+..++++.+ +.++..++.++..++...... ..++... .++.+.....+ .+++++.
T Consensus 605 --~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~---------~~~~~~~-----~~~~l~~~l~~~~~~~vr~ 668 (876)
T 1qgr_A 605 --DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGE---------FLKYMEA-----FKPFLGIGLKNYAEYQVCL 668 (876)
T ss_dssp --HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGG---------GGGGHHH-----HHHHHHHHHHHCTTHHHHH
T ss_pred --HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhh---------HHHHHHH-----HHHHHHHHHcCcchHHHHH
Confidence 124566677776654 478899999999988753321 1112222 24555444443 4778888
Q ss_pred HHHHHHHHh
Q 037562 652 KAVEILETY 660 (670)
Q Consensus 652 ~a~~~l~~~ 660 (670)
.|.+.+..+
T Consensus 669 ~a~~~l~~l 677 (876)
T 1qgr_A 669 AAVGLVGDL 677 (876)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887766654
No 54
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.52 E-value=4.3e-13 Score=145.70 Aligned_cols=327 Identities=13% Similarity=0.097 Sum_probs=237.6
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562 239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK 318 (670)
Q Consensus 239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 318 (670)
.++.+.+.+.+.++.++..|+.++.++.... .+.. .++++.+..++.+.+ +.|+..|+.+|..++..+++...
T Consensus 143 l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~v-----~~~~~~l~~lL~D~d-~~V~~~Al~~L~~i~~~~~~~~~ 215 (618)
T 1w63_A 143 LAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PELM-----EMFLPATKNLLNEKN-HGVLHTSVVLLTEMCERSPDMLA 215 (618)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GGGG-----GGGGGGTTTSTTCCC-HHHHHHHHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hHHH-----HHHHHHHHHHhCCCC-HhHHHHHHHHHHHHHHhChHHHH
Confidence 3688888899999999999999999997753 2222 257888888998888 99999999999999985554333
Q ss_pred HHHhCCChHHHHHhhCC---------------CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc-----cc
Q 037562 319 VVIDHGAVPIFVKLLAS---------------PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELN-----EN 378 (670)
Q Consensus 319 ~i~~~~~i~~L~~lL~~---------------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~-----~~ 378 (670)
.+. ..++.++..|.+ .++-.+..++.+|+.++..++...+. ..+.|..++. ++
T Consensus 216 ~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~-----~~~~L~~l~~~~~~~~~ 288 (618)
T 1w63_A 216 HFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEA-----MNDILAQVATNTETSKN 288 (618)
T ss_dssp HHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHT-----THHHHHHHHHTSCCSST
T ss_pred HHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHH-----HHHHHHHHHhccccccc
Confidence 333 578888876652 47888899999999999776653322 3444444442 12
Q ss_pred CChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHh
Q 037562 379 ANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVEL 458 (670)
Q Consensus 379 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 458 (670)
.+..+...++.++..+... ......+++.+..++.+++++++..++.++..++...+. .+. .....++.+
T Consensus 289 ~~~aV~~ea~~~i~~l~~~-----~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~----~~~-~~~~~i~~~ 358 (618)
T 1w63_A 289 VGNAILYETVLTIMDIKSE-----SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN----AVQ-RHRSTIVDC 358 (618)
T ss_dssp HHHHHHHHHHHHHHHSCCC-----HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH----HHG-GGHHHHHHG
T ss_pred hHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH----HHH-HHHHHHHHH
Confidence 3457788888888886432 122346778899999999999999999999999865332 222 466789999
Q ss_pred cCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChH
Q 037562 459 LGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIG 538 (670)
Q Consensus 459 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~ 538 (670)
+.+++..+|..|+.++..++... .... +++.+...+.+. +.+++..++.+++.++...+.... ..++
T Consensus 359 l~d~d~~Ir~~alelL~~l~~~~--nv~~-----iv~eL~~~l~~~-d~e~r~~~v~~I~~la~k~~~~~~-----~~v~ 425 (618)
T 1w63_A 359 LKDLDVSIKRRAMELSFALVNGN--NIRG-----MMKELLYFLDSC-EPEFKADCASGIFLAAEKYAPSKR-----WHID 425 (618)
T ss_dssp GGSSCHHHHHHHHHHHHHHCCSS--STHH-----HHHHHHHHHHHC-CHHHHHHHHHHHHHHHHSSCCCHH-----HHHH
T ss_pred ccCCChhHHHHHHHHHHHHcccc--cHHH-----HHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhCccHH-----HHHH
Confidence 99999999999999999998632 2232 356778888888 899999999999999874322221 2367
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccC--CChHHHHHHHHHHHHHHHh
Q 037562 539 PIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLC--ADPKIVTVCLEGLENILKV 608 (670)
Q Consensus 539 ~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~~l~~l~~~ 608 (670)
.+++++......++..+..++..+... .++.... ++..|++++.+ .+..+...++|+++.+...
T Consensus 426 ~ll~lL~~~~~~v~~~~~~~l~~ii~~-~p~l~~~-----~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~ 491 (618)
T 1w63_A 426 TIMRVLTTAGSYVRDDAVPNLIQLITN-SVEMHAY-----TVQRLYKAILGDYSQQPLVQVAAWCIGEYGDL 491 (618)
T ss_dssp HHHHHHHHTGGGSCSSHHHHHHHHHHH-SCSTHHH-----HHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHhc-ChhHHHH-----HHHHHHHHHhcccccHHHHHHHHHHHhhhHHH
Confidence 888888877777777788888887764 2333232 45567777753 3445566789999987653
No 55
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.48 E-value=3.6e-12 Score=151.05 Aligned_cols=405 Identities=13% Similarity=0.107 Sum_probs=266.3
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562 239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK 318 (670)
Q Consensus 239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 318 (670)
.++.+++.+.+.|++++..|...|.+........ ...-....+++.+++.+.+++ +.+|..|+.+|+.++...+. .
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~-~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~--~ 82 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIK-LDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKE--Y 82 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCS-CCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCH--H
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccC-CChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCH--H
Confidence 4788999999999999999999998876542111 111112236778889998877 89999999999999874433 1
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh------HHHHHhcCChHHHHHHhcccCChhHHHHHHHHHH
Q 037562 319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC------RDLVLSQGALIPLLAELNENANLSMLRTATWTLF 392 (670)
Q Consensus 319 ~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~------~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~ 392 (670)
.+ ..+++.++..+.++++.+|..|+.+|+.++...+.. ... .....++.++..+.++.+..++..|+.++.
T Consensus 83 ~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~-~~~~llp~L~~~l~~~~~~~~~~~al~~l~ 159 (1230)
T 1u6g_C 83 QV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIAKQEDVSVQLEALDIMA 159 (1230)
T ss_dssp HH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 11 135778888888889999999999999988433221 011 112357888888844577899999999999
Q ss_pred hhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCC-CccchhHHH
Q 037562 393 NFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHS-SSSVLTPAL 471 (670)
Q Consensus 393 ~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~ 471 (670)
.++...+..........++.+...+.++++.+|..++.+++.++...+.. ++ ..+++.++..+.+. +..++..++
T Consensus 160 ~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~~-~~~l~~l~~~L~~~~~~~~r~~a~ 235 (1230)
T 1u6g_C 160 DMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---VF-VDLIEHLLSELSKNDSMSTTRTYI 235 (1230)
T ss_dssp HHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHH
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHHHhccCCchhHHHHHH
Confidence 99865433222244778888999999989999999999999999765432 12 24577777777654 357888999
Q ss_pred HHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh------
Q 037562 472 RTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ------ 545 (670)
Q Consensus 472 ~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~------ 545 (670)
.+++.++...+..... .-..+++.++..+.+. ++++|..+..++..++...+......+ ..+++.++..+.
T Consensus 236 ~~l~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~ 312 (1230)
T 1u6g_C 236 QCIAAISRQAGHRIGE-YLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYN 312 (1230)
T ss_dssp HHHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC----
T ss_pred HHHHHHHHHhHHHHHH-HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCC
Confidence 9999998754432221 1236789999999888 899999999999998764322111111 112333332221
Q ss_pred -------------------------------cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHH
Q 037562 546 -------------------------------NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKI 594 (670)
Q Consensus 546 -------------------------------~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v 594 (670)
+...++|..|+.++..++.........+ -..+++.+...+.+.++.+
T Consensus 313 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~--~~~l~~~l~~~l~d~~~~V 390 (1230)
T 1u6g_C 313 YDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF--YKTVSPALISRFKEREENV 390 (1230)
T ss_dssp --------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH--HTTTHHHHHSTTSCSSSHH
T ss_pred CcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHcCCCchHH
Confidence 1124679999999999987532212222 2457888989998999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCC---C---CCc-cHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562 595 VTVCLEGLENILKVGVAEMNTGTA---V---GDF-NQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYW 661 (670)
Q Consensus 595 ~~~a~~~l~~l~~~~~~~~~~~~~---~---~~~-~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~ 661 (670)
+..++.++..++............ . ... ......+ ...++.+.....++++.++..+..++..+.
T Consensus 391 r~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~ 462 (1230)
T 1u6g_C 391 KADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV--PNIVKALHKQMKEKSVKTRQCCFNMLTELV 462 (1230)
T ss_dssp HHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT--THHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh--hHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 999999998887643210000000 0 000 0001111 122444555567778888877777776553
No 56
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.47 E-value=2.6e-13 Score=143.36 Aligned_cols=363 Identities=13% Similarity=0.090 Sum_probs=242.6
Q ss_pred ccHHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCCCCc----------HHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHH
Q 037562 238 EILPAMVDGVWSD--DNSLQLEATTLFINLLSFDRSPP----------IDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWA 305 (670)
Q Consensus 238 ~~i~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~----------~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~ 305 (670)
+.+..++..+.++ ++.++..|+..|.++........ ...-....+-..++..+.+++ +.+ ..++.+
T Consensus 35 ~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~~~ 112 (462)
T 1ibr_B 35 TFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSASQC 112 (462)
T ss_dssp HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHHHH
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHHHH
Confidence 3455666666643 67899999999999875420000 000011224455778888877 678 889999
Q ss_pred HHHHcCCChhhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHHHHhcccC-Ch
Q 037562 306 LTNIASGTSENTKVVIDHGAVPIFVKLLASP--SVDVRKQTVWALGNVAGDS-PRCRDLVLSQGALIPLLAELNENA-NL 381 (670)
Q Consensus 306 L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~~~i~~Ll~~l~~~~-~~ 381 (670)
++.++....... .-.+.++.++..+.++ ++.++..++.+|+.++... +..-.... ...++.++..+.+.. +.
T Consensus 113 i~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~ 188 (462)
T 1ibr_B 113 VAGIACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSN 188 (462)
T ss_dssp HHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCH
T ss_pred HHHHHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCH
Confidence 999987321100 1246889999999888 8999999999999998532 21111111 124677777774443 78
Q ss_pred hHHHHHHHHHHhhhcCCC--CCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhc
Q 037562 382 SMLRTATWTLFNFCRGKP--QPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELL 459 (670)
Q Consensus 382 ~~~~~a~~~L~~l~~~~~--~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL 459 (670)
.++..|+.++.++..... .........+++.+...+.++++.++..++.++..++...+......+..++++.++..+
T Consensus 189 ~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~ 268 (462)
T 1ibr_B 189 NVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM 268 (462)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998764321 001111123467777778888999999999999999865443322222225677777788
Q ss_pred CCCCccchhHHHHHHHHhhcCCch-----------------hhHHHHh---CCChHHHHHhhccC------CchhHHHHH
Q 037562 460 GHSSSSVLTPALRTIRNIVKGDDF-----------------QTQCIIN---CGALPYFLDMLVHN------HEESIKKEV 513 (670)
Q Consensus 460 ~~~~~~v~~~a~~~L~~l~~~~~~-----------------~~~~l~~---~~~~~~L~~~l~~~------~~~~v~~~a 513 (670)
.+.++.++..|+.++..++..... ....+++ ..+++.++..+... .+..+|..|
T Consensus 269 ~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a 348 (462)
T 1ibr_B 269 KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAA 348 (462)
T ss_dssp HCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHH
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHH
Confidence 888889999999999988753200 0000111 23566666666432 145799999
Q ss_pred HHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChH
Q 037562 514 SWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPK 593 (670)
Q Consensus 514 ~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~ 593 (670)
+.++..++...++ .+. ..+++.+...+.+.++.+|..|+.+++.++....++.....+ ..+++.++..+.++++.
T Consensus 349 ~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~~~~ 423 (462)
T 1ibr_B 349 GVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVV 423 (462)
T ss_dssp HHHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCSCHH
T ss_pred HHHHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCCCHH
Confidence 9999999774332 111 236677778888889999999999999999854322111111 45788999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 037562 594 IVTVCLEGLENILKVGVA 611 (670)
Q Consensus 594 v~~~a~~~l~~l~~~~~~ 611 (670)
||..|+++++++......
T Consensus 424 Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 424 VRDTAAWTVGRICELLPE 441 (462)
T ss_dssp HHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 999999999999876543
No 57
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.47 E-value=2.5e-12 Score=147.46 Aligned_cols=406 Identities=13% Similarity=0.158 Sum_probs=258.2
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh--
Q 037562 239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN-- 316 (670)
Q Consensus 239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~-- 316 (670)
.++.+.+.+.++++.++..|+.++..++.....+..... -..+++.++..+.+++ +.+|..|++++++++...+..
T Consensus 367 ~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~ 444 (876)
T 1qgr_A 367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAAI 444 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGGTS
T ss_pred HHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCchhcc
Confidence 356666777788899999999999999765311222222 2347889999999888 899999999999998743321
Q ss_pred -HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc---------------hhHHHHHhcCChHHHHHHhcccC-
Q 037562 317 -TKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSP---------------RCRDLVLSQGALIPLLAELNENA- 379 (670)
Q Consensus 317 -~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~---------------~~~~~i~~~~~i~~Ll~~l~~~~- 379 (670)
...+ ..+++.++..+.++ +.++..++++|.+++.... .....+ ...++.++..+....
T Consensus 445 ~~~~l--~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~ 519 (876)
T 1qgr_A 445 NDVYL--APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDG 519 (876)
T ss_dssp STTTH--HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSS
T ss_pred cHHHH--HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCc
Confidence 1111 13567788888775 8999999999999984211 011111 124666777764332
Q ss_pred -ChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhcc-----------CC----hhHHHHHHHHHHHhccCCh-HH
Q 037562 380 -NLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRS-----------ND----EEVLTDACWALSYLSDGTN-DK 442 (670)
Q Consensus 380 -~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~-----------~~----~~v~~~al~~L~~l~~~~~-~~ 442 (670)
+..++..+..++..++...+..........++.++..+.. +| ++++..++.++..++.... ..
T Consensus 520 ~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~ 599 (876)
T 1qgr_A 520 HQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQD 599 (876)
T ss_dssp CSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred chhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhh
Confidence 3577788889999888776555555556777777766652 12 4567888999999887655 33
Q ss_pred HHHHHHcCCHHHHHHhcCCCC--ccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHh
Q 037562 443 VQAVIEAGVYPRLVELLGHSS--SSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNI 520 (670)
Q Consensus 443 ~~~~~~~~~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l 520 (670)
..... ..+++.++..+++.+ ..++..++.+++.++..........+. .+++.+...+.+..++.+|..|+++++.+
T Consensus 600 ~~~~~-~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l 677 (876)
T 1qgr_A 600 ALQIS-DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDL 677 (876)
T ss_dssp HHTTH-HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred hhHHH-HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHH
Confidence 33333 257788888888764 468999999999998643322222222 36778888887654688999999999999
Q ss_pred hcCCHHHHHHHHhcCChHHHHHHhhc--CChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCC-------
Q 037562 521 TCGNREQIQAVIDSGLIGPIVNLLQN--TEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCAD------- 591 (670)
Q Consensus 521 ~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~------- 591 (670)
+........... ..+++.++..+.+ .+.+++..+++++++++....++...++ ..+++.+.+.++...
T Consensus 678 ~~~~~~~~~~~~-~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l--~~~~~~l~~~~~~~~~~~d~~~ 754 (876)
T 1qgr_A 678 CRALQSNIIPFC-DEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYL--EVVLNTLQQASQAQVDKSDYDM 754 (876)
T ss_dssp HHHHGGGGHHHH-HHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHTCCCCTTCHHH
T ss_pred HHHHHHhhhhhH-HHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHhccCCCCChHH
Confidence 763222222222 3477888888876 3578999999999999763222222221 124566666664332
Q ss_pred ----hHHHHHHHHHHHHHHHhhhhhhcc-CCCCCCccHHHHHHHHhchHHHHHHhhcCC--CHHHHHHHHHHHHHhc
Q 037562 592 ----PKIVTVCLEGLENILKVGVAEMNT-GTAVGDFNQYAQLVEEAEGLEKIENLQSHD--DNGISEKAVEILETYW 661 (670)
Q Consensus 592 ----~~v~~~a~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~--~~~v~~~a~~~l~~~~ 661 (670)
..++..++.++..++......... .+......++...+ ++.+..+..++ +..++..|...+..+.
T Consensus 755 ~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l~ 826 (876)
T 1qgr_A 755 VDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDLC 826 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 268888889988887653321000 00000112222222 34444444555 7789988888777653
No 58
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.42 E-value=5.1e-12 Score=149.76 Aligned_cols=424 Identities=14% Similarity=0.146 Sum_probs=272.8
Q ss_pred chhhhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCc----HHH
Q 037562 201 LNTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPP----IDE 276 (670)
Q Consensus 201 ~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~----~~~ 276 (670)
-+..+|..+...+..+...... +.....++.+++.+.++++.++..|+.+|..++....... ...
T Consensus 60 ~~~~vR~~A~~~L~~l~~~~~~-----------~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~ 128 (1230)
T 1u6g_C 60 KNGEVQNLAVKCLGPLVSKVKE-----------YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAA 128 (1230)
T ss_dssp SSHHHHHHHHHHHHHHHTTSCH-----------HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCH-----------HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHH
Confidence 3566788887777766643211 1122457888888888888999999999999876532220 011
Q ss_pred HHHcCCHHHHHHhhcC-CCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 037562 277 VIQSGVVPRFVEFLMR-QDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDS 355 (670)
Q Consensus 277 ~~~~g~l~~L~~ll~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 355 (670)
-.-..++|.|+..+.+ ++ +.++..|+.++..++...+....... ..+++.+...+.++++.+|..|+.+++.++...
T Consensus 129 ~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~ 206 (1230)
T 1u6g_C 129 NVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC 206 (1230)
T ss_dssp HHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhc
Confidence 1223478999999984 66 89999999999998842111100001 235677888888899999999999999998654
Q ss_pred chhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHh
Q 037562 356 PRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYL 435 (670)
Q Consensus 356 ~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l 435 (670)
+. .++ ...++.++..+....+..++..++.++..++...+..-......++|.+...+.+++++++..++.++..+
T Consensus 207 ~~---~~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l 282 (1230)
T 1u6g_C 207 GN---IVF-VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESF 282 (1230)
T ss_dssp -------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHH
T ss_pred CH---HHH-HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 32 121 23478888888665555677788888888886543322223467899999999988999999999999988
Q ss_pred ccCChHHHHHHHHcCCHHHHHHhcCC-------------------------------------CCccchhHHHHHHHHhh
Q 037562 436 SDGTNDKVQAVIEAGVYPRLVELLGH-------------------------------------SSSSVLTPALRTIRNIV 478 (670)
Q Consensus 436 ~~~~~~~~~~~~~~~~i~~L~~lL~~-------------------------------------~~~~v~~~a~~~L~~l~ 478 (670)
+............ .+++.++..+.. ..+++|..|+.++..++
T Consensus 283 ~~~~~~~~~~~l~-~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~ 361 (1230)
T 1u6g_C 283 VRRCPKEVYPHVS-TIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVV 361 (1230)
T ss_dssp HHCTTCCCHHHHH-HHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHH
T ss_pred HHHChHHHHHhHH-HHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHH
Confidence 7654322221221 344444444421 12457889999999998
Q ss_pred cCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcC--C-----------------HHHHHHHHhcCChHH
Q 037562 479 KGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCG--N-----------------REQIQAVIDSGLIGP 539 (670)
Q Consensus 479 ~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~--~-----------------~~~~~~l~~~~~i~~ 539 (670)
...+......+ ..+++.++..+.+. ++.+|..++.++..++.. . ......++ ..+++.
T Consensus 362 ~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~ 438 (1230)
T 1u6g_C 362 STRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKA 438 (1230)
T ss_dssp TTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHT-THHHHH
T ss_pred HhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHH
Confidence 75443333333 35778888888777 899999999988877641 1 11111222 235666
Q ss_pred HHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCCh--HHHHHHHHHHHHHHHhhhhhhccCC
Q 037562 540 IVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADP--KIVTVCLEGLENILKVGVAEMNTGT 617 (670)
Q Consensus 540 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~--~v~~~a~~~l~~l~~~~~~~~~~~~ 617 (670)
+...+.++++.+|..++.+++.++.........++ ..+++.+...+.+.++ .++..++.++..++.......
T Consensus 439 l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l--~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~---- 512 (1230)
T 1u6g_C 439 LHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI--PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQV---- 512 (1230)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGG----
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH--HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHH----
Confidence 66778888999999999999998764321111111 1257788888887764 888899999888875322110
Q ss_pred CCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 037562 618 AVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETY 660 (670)
Q Consensus 618 ~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~ 660 (670)
+...+ ...++.+.....+.+..++..|..++..+
T Consensus 513 -------~~~~l--~~llp~L~~~l~d~~~~v~~~al~~l~~l 546 (1230)
T 1u6g_C 513 -------FHPHV--QALVPPVVACVGDPFYKITSEALLVTQQL 546 (1230)
T ss_dssp -------GHHHH--TTTHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred -------HHhHH--HHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 11122 12355555555566666666665555543
No 59
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.41 E-value=6.9e-12 Score=116.74 Aligned_cols=189 Identities=19% Similarity=0.172 Sum_probs=158.2
Q ss_pred hccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhh
Q 037562 237 LEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSEN 316 (670)
Q Consensus 237 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~ 316 (670)
.+.++.+++.++++++.++..|+..|..+.. .+.++.|++++.+++ +.+|..|+++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~----- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGD----- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----
T ss_pred HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC-----
Confidence 4678999999999999999999999998733 136899999999988 8999999999999864
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhc
Q 037562 317 TKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCR 396 (670)
Q Consensus 317 ~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~ 396 (670)
.+.++.|+.++.++++.++..|+++|+.+.. + ..++.|+..+ .+.++.++..++++|..+..
T Consensus 80 ------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 80 ------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--E---------RAVEPLIKAL-KDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHH-hCCCHHHHHHHHHHHHHcCC
Confidence 2468999999999999999999999999852 1 2578888888 78899999999999999853
Q ss_pred CCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHH
Q 037562 397 GKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRN 476 (670)
Q Consensus 397 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~ 476 (670)
...++.|..+++++++.++..++.+|+.+.. ...++.|..+++++++.+|..|..+|.+
T Consensus 142 ----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 ----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET 200 (211)
T ss_dssp ----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC
T ss_pred ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 3578999999999999999999999999853 1355778888889999999999999998
Q ss_pred hhcCCc
Q 037562 477 IVKGDD 482 (670)
Q Consensus 477 l~~~~~ 482 (670)
+.....
T Consensus 201 ~~~~~~ 206 (211)
T 3ltm_A 201 HKSFNH 206 (211)
T ss_dssp ------
T ss_pred cCCCCC
Confidence 876443
No 60
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.39 E-value=9.6e-12 Score=115.74 Aligned_cols=187 Identities=19% Similarity=0.167 Sum_probs=158.1
Q ss_pred cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q 037562 280 SGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCR 359 (670)
Q Consensus 280 ~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 359 (670)
.+.++.|++.|.+++ +.+|..|+.+|+.+.. .+.++.|+.++.++++.++..|+++|+.+.. +
T Consensus 18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--~--- 80 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E--- 80 (211)
T ss_dssp GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--G---
T ss_pred HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H---
Confidence 346899999999888 8999999999999865 2578999999999999999999999999852 1
Q ss_pred HHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC
Q 037562 360 DLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGT 439 (670)
Q Consensus 360 ~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~ 439 (670)
+.++.++..+ .+.++.++..++++|..+.. ...++.|..++.++++.++..++.+|+.+..
T Consensus 81 ------~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-- 141 (211)
T 3ltm_A 81 ------RAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-- 141 (211)
T ss_dssp ------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence 2578888888 77889999999999999864 3578999999999999999999999999853
Q ss_pred hHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHH
Q 037562 440 NDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISN 519 (670)
Q Consensus 440 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~ 519 (670)
...++.+..++.++++.+|..|+.+|+.+.. ...++.|..+++++ ++.||..|..+|.+
T Consensus 142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~ 200 (211)
T 3ltm_A 142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET 200 (211)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence 1467889999999999999999999999843 13567788899888 99999999999999
Q ss_pred hhcC
Q 037562 520 ITCG 523 (670)
Q Consensus 520 l~~~ 523 (670)
+...
T Consensus 201 ~~~~ 204 (211)
T 3ltm_A 201 HKSF 204 (211)
T ss_dssp ----
T ss_pred cCCC
Confidence 8654
No 61
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.39 E-value=1.2e-11 Score=114.10 Aligned_cols=184 Identities=20% Similarity=0.187 Sum_probs=157.6
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT 317 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 317 (670)
+..+.+++.+.++++.++..|++.|..+.. .+.++.|++++.+++ +.+|..|+++|+.+..
T Consensus 14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l~~~~-~~vr~~a~~~L~~~~~------ 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALKDED-AWVRRAAADALGQIGD------ 74 (201)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC------
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC------
Confidence 557899999999999999999999998732 136889999999888 8999999999999864
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562 318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG 397 (670)
Q Consensus 318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 397 (670)
...++.++.++.++++.+|..|+++|+.+.. + ..++.++..+ .+.++.++..++++|..+..
T Consensus 75 -----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~- 136 (201)
T 3ltj_A 75 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--E---------RAVEPLIKAL-KDEDWFVRIAAAFALGEIGD- 136 (201)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHTC-
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC-
Confidence 2468999999999999999999999999852 2 2578888888 77889999999999999864
Q ss_pred CCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHh
Q 037562 398 KPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNI 477 (670)
Q Consensus 398 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 477 (670)
...++.|..++.++++.++..++.+|+.+.. + ..++.|..++.++++.+|..|..+|..+
T Consensus 137 ---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999842 1 3557788888889999999999999877
Q ss_pred h
Q 037562 478 V 478 (670)
Q Consensus 478 ~ 478 (670)
.
T Consensus 197 ~ 197 (201)
T 3ltj_A 197 K 197 (201)
T ss_dssp C
T ss_pred H
Confidence 4
No 62
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.37 E-value=2e-11 Score=112.67 Aligned_cols=184 Identities=20% Similarity=0.189 Sum_probs=158.0
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHH
Q 037562 281 GVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRD 360 (670)
Q Consensus 281 g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 360 (670)
+..+.++++|.+++ +.+|..|+++|+.+.. .+.++.|+.++.++++.++..|+++|+.+.. +
T Consensus 14 ~~~~~~i~~L~~~~-~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--~---- 75 (201)
T 3ltj_A 14 EKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E---- 75 (201)
T ss_dssp HHHHHHHHHTTCSC-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G----
T ss_pred cchHHHHHHhcCCC-HHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H----
Confidence 35788999999999 8999999999999864 2468999999999999999999999999852 2
Q ss_pred HHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCh
Q 037562 361 LVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTN 440 (670)
Q Consensus 361 ~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~ 440 (670)
..++.++..+ .+.++.++..|+++|..+.. ...++.+..++.++++.++..++++|+.+..
T Consensus 76 -----~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--- 136 (201)
T 3ltj_A 76 -----RAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--- 136 (201)
T ss_dssp -----GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC---
T ss_pred -----HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---
Confidence 2578888888 77889999999999999854 3578899999999999999999999999863
Q ss_pred HHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHh
Q 037562 441 DKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNI 520 (670)
Q Consensus 441 ~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l 520 (670)
.+.++.+..++.++++.+|..|+.+|+.+.. + ..++.|..++.++ ++.+|..|..+|.++
T Consensus 137 --------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~-~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 137 --------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETG-TGFARKVAVNYLETH 196 (201)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHC-CHHHHHHHHHHHHHC
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 2567889999999999999999999999832 1 2567888899888 999999999999987
Q ss_pred h
Q 037562 521 T 521 (670)
Q Consensus 521 ~ 521 (670)
.
T Consensus 197 ~ 197 (201)
T 3ltj_A 197 K 197 (201)
T ss_dssp C
T ss_pred H
Confidence 4
No 63
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.30 E-value=1.1e-11 Score=123.62 Aligned_cols=152 Identities=17% Similarity=0.224 Sum_probs=82.1
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCcc---------ccccceeeecccccccccccchhh
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTS---------FQNLTNLVVSHCKRLKIVLTSSIA 93 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~---------~~~L~~L~i~~c~~l~~l~~~~~~ 93 (670)
+|++|+++++ .++.++.. ...+++|+.|++++|..+..+|..... +++|++|++++| +++.+ +..+
T Consensus 128 ~L~~L~Ls~n-~l~~lp~~-l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~l--p~~l 202 (328)
T 4fcg_A 128 GLETLTLARN-PLRALPAS-IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSL--PASI 202 (328)
T ss_dssp TCSEEEEESC-CCCCCCGG-GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCC--CGGG
T ss_pred CCCEEECCCC-ccccCcHH-HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcc--hHhh
Confidence 4444444443 23333322 234445555555555444444433322 445555555544 23322 1234
Q ss_pred hcccccceeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCcccccc
Q 037562 94 KTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSG 173 (670)
Q Consensus 94 ~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~ 173 (670)
..+++|++|++++|. +..++ .....+++|+.|.+.+|.....++. ....+++|+.|++.+|+.+..+|.
T Consensus 203 ~~l~~L~~L~L~~N~-l~~l~--------~~l~~l~~L~~L~Ls~n~~~~~~p~--~~~~l~~L~~L~L~~n~~~~~~p~ 271 (328)
T 4fcg_A 203 ANLQNLKSLKIRNSP-LSALG--------PAIHHLPKLEELDLRGCTALRNYPP--IFGGRAPLKRLILKDCSNLLTLPL 271 (328)
T ss_dssp GGCTTCCEEEEESSC-CCCCC--------GGGGGCTTCCEEECTTCTTCCBCCC--CTTCCCCCCEEECTTCTTCCBCCT
T ss_pred cCCCCCCEEEccCCC-CCcCc--------hhhccCCCCCEEECcCCcchhhhHH--HhcCCCCCCEEECCCCCchhhcch
Confidence 455555555555543 22221 1234567777777777777666554 245577788888888877777777
Q ss_pred CCcCCCCccceeeeecc
Q 037562 174 GELSTPNLHKVQLSRWD 190 (670)
Q Consensus 174 ~~~~~~~L~~l~i~~~~ 190 (670)
.+..+++|+.|++++++
T Consensus 272 ~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 272 DIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp TGGGCTTCCEEECTTCT
T ss_pred hhhcCCCCCEEeCCCCC
Confidence 77777788888776654
No 64
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.29 E-value=1.1e-11 Score=123.72 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=127.3
Q ss_pred CCccccEEEeccCcCcccccccc--------cccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccch
Q 037562 20 NGMEVKISEAYNCYRLENILIEE--------SSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSS 91 (670)
Q Consensus 20 ~~~~L~~L~i~~c~~l~~~~~~~--------~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~ 91 (670)
...+|++|++++|..+..++... ...+++|++|++++| .+..+|..+..+++|++|++++|. +..+ ++
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~-l~~l--~~ 223 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSP-LSAL--GP 223 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSC-CCCC--CG
T ss_pred cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCC-CCcC--ch
Confidence 34499999999999888877532 124899999999998 466788778889999999999984 4444 24
Q ss_pred hhhcccccceeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCcccc
Q 037562 92 IAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIF 171 (670)
Q Consensus 92 ~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~ 171 (670)
.+..+++|++|++++|.....++. ....+++|+.|.+.+|..+..++.. ...+++|+.|++++|+.+..+
T Consensus 224 ~l~~l~~L~~L~Ls~n~~~~~~p~--------~~~~l~~L~~L~L~~n~~~~~~p~~--~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 224 AIHHLPKLEELDLRGCTALRNYPP--------IFGGRAPLKRLILKDCSNLLTLPLD--IHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp GGGGCTTCCEEECTTCTTCCBCCC--------CTTCCCCCCEEECTTCTTCCBCCTT--GGGCTTCCEEECTTCTTCCCC
T ss_pred hhccCCCCCEEECcCCcchhhhHH--------HhcCCCCCCEEECCCCCchhhcchh--hhcCCCCCEEeCCCCCchhhc
Confidence 577899999999999987765542 3346899999999999999888764 567899999999999999999
Q ss_pred ccCCcCCCCccceeee
Q 037562 172 SGGELSTPNLHKVQLS 187 (670)
Q Consensus 172 p~~~~~~~~L~~l~i~ 187 (670)
|.++..+++|+.+.+.
T Consensus 294 P~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 294 PSLIAQLPANCIILVP 309 (328)
T ss_dssp CGGGGGSCTTCEEECC
T ss_pred cHHHhhccCceEEeCC
Confidence 9999989999988775
No 65
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.28 E-value=4.1e-10 Score=121.77 Aligned_cols=329 Identities=12% Similarity=0.111 Sum_probs=224.1
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhh--cCCCCHHHHHHHHHHHHHHcCCChhh
Q 037562 239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFL--MRQDYPQLQFKAAWALTNIASGTSEN 316 (670)
Q Consensus 239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll--~~~~~~~v~~~a~~~L~~l~~~~~~~ 316 (670)
.+..+.+-++++++.++..|+++++++.. ..+.+ .+++.+.+++ .+.+ +.||..|+.++.++...+++.
T Consensus 112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~~-------~e~~~-~l~~~v~~~l~~~d~~-~~VRK~A~~al~kl~~~~p~~ 182 (621)
T 2vgl_A 112 INNAIKNDLASRNPTFMGLALHCIANVGS-------REMAE-AFAGEIPKILVAGDTM-DSVKQSAALCLLRLYRTSPDL 182 (621)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHCC-------HHHHH-HHTTHHHHHHHCSSSC-HHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhccCC-------HHHHH-HHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhChhh
Confidence 46677888889999999999999999832 22333 3677888888 7778 999999999999998855543
Q ss_pred HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc----c--c----------CC
Q 037562 317 TKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELN----E--N----------AN 380 (670)
Q Consensus 317 ~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~----~--~----------~~ 380 (670)
.. ..+.++.+..+|.++++.++..|+.++..++..++.. + ...++.++..+. . . .+
T Consensus 183 ~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~---~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~ 254 (621)
T 2vgl_A 183 VP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE---F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPA 254 (621)
T ss_dssp CC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH---H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEES
T ss_pred cC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH---H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCC
Confidence 32 2478999999999999999999999999998665431 1 112444444332 1 1 15
Q ss_pred hhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhh---------ccCC--hhHHHHHHHHHHHhccCChHHHHHHHHc
Q 037562 381 LSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLI---------RSND--EEVLTDACWALSYLSDGTNDKVQAVIEA 449 (670)
Q Consensus 381 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL---------~~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~ 449 (670)
+..+...+..+..++..............++.++..+ ++.+ ..|...++.++..+.. .+....
T Consensus 255 ~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~----- 328 (621)
T 2vgl_A 255 PWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV----- 328 (621)
T ss_dssp HHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----
T ss_pred chHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----
Confidence 6778888888888775321111111123333333322 1223 3788888899888863 222222
Q ss_pred CCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhc-cCCchhHHHHHHHHHHHhhcCCHHHH
Q 037562 450 GVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLV-HNHEESIKKEVSWIISNITCGNREQI 528 (670)
Q Consensus 450 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~-~~~~~~v~~~a~~~L~~l~~~~~~~~ 528 (670)
.++..+..++.++++.+|..|+..|..++...+. .. ++ ......++..+. ++ +..++..|..++..++. +.+.
T Consensus 329 ~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~-~~-~~~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~--~~Nv 402 (621)
T 2vgl_A 329 RACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HE-AV-KTHIETVINALKTER-DVSVRQRAVDLLYAMCD--RSNA 402 (621)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HH-HH-HTTHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC--HHHH
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HH-HH-HHHHHHHHHHhccCC-CHhHHHHHHHHHHHHcC--hhhH
Confidence 3567788999888999999999999999876542 11 22 245777888888 77 89999999999999974 4444
Q ss_pred HHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHH
Q 037562 529 QAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILK 607 (670)
Q Consensus 529 ~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~ 607 (670)
.. ++..|...+...+.+++..++.+++.++....+.. .. .++.|++++......+...+...+..++.
T Consensus 403 ~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~-~~-----~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~ 470 (621)
T 2vgl_A 403 QQ-----IVAEMLSYLETADYSIREEIVLKVAILAEKYAVDY-TW-----YVDTILNLIRIAGDYVSEEVWYRVIQIVI 470 (621)
T ss_dssp HH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSST-HH-----HHHHHHHHHHHHGGGSCSHHHHHHHHHHG
T ss_pred HH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH-HH-----HHHHHHHHHHhhcccchHHHHHHHHHHHh
Confidence 43 45567788888899999999999999875311111 11 35667777755444444445555555554
No 66
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.26 E-value=8.4e-10 Score=119.37 Aligned_cols=328 Identities=13% Similarity=0.104 Sum_probs=232.8
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT 317 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 317 (670)
...+..++.+.+++...+.-+.-++..++..+ + +.+.- +++.+.+-+++++ +.++..|+++++++.. ++..
T Consensus 74 ~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~-~---e~~~L--~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~ 144 (621)
T 2vgl_A 74 FGHMEAVNLLSSNRYTEKQIGYLFISVLVNSN-S---ELIRL--INNAIKNDLASRN-PTFMGLALHCIANVGS--REMA 144 (621)
T ss_dssp SCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC-H---HHHHH--HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHH
T ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHccCC-c---HHHHH--HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHH
Confidence 34678888899999999999998888886542 2 11111 3567777788888 8999999999999964 5544
Q ss_pred HHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhh
Q 037562 318 KVVIDHGAVPIFVKLL--ASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFC 395 (670)
Q Consensus 318 ~~i~~~~~i~~L~~lL--~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~ 395 (670)
+ .+++.+.+.+ .+.++.||..|+.++.++....|+. +...+.++.+..++ .+.++.++.+|+.++..++
T Consensus 145 ~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~ 215 (621)
T 2vgl_A 145 E-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLA 215 (621)
T ss_dssp H-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHH
Confidence 3 3467888898 8899999999999999998765542 22236788888888 7889999999999999998
Q ss_pred cCCCCCChhhhhhhHHHHH----HhhccC-------------ChhHHHHHHHHHHHhccCC-hHHHHHHHHcCCHHHHHH
Q 037562 396 RGKPQPPFNQVRPALPVLA----QLIRSN-------------DEEVLTDACWALSYLSDGT-NDKVQAVIEAGVYPRLVE 457 (670)
Q Consensus 396 ~~~~~~~~~~~~~~i~~L~----~lL~~~-------------~~~v~~~al~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ 457 (670)
...+. .....+|.++ +++..+ ++-.+..++..+..++... +.....+.+ ++..++.
T Consensus 216 ~~~~~----~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~ 289 (621)
T 2vgl_A 216 QKNPE----EFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILN 289 (621)
T ss_dssp HHCHH----HHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHH
T ss_pred HhChH----HHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHH
Confidence 76532 1223444444 443322 6789999999999988643 333332332 3334443
Q ss_pred hcC---------CCCc--cchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHH
Q 037562 458 LLG---------HSSS--SVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNRE 526 (670)
Q Consensus 458 lL~---------~~~~--~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~ 526 (670)
.+. +.+. .|...|+.++..+.. .+.... .++..|..++.+. ++++|..|..++..++...+.
T Consensus 290 ~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~ 362 (621)
T 2vgl_A 290 KAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS 362 (621)
T ss_dssp HHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT
T ss_pred hhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc
Confidence 321 1122 677788888888752 222222 3567788889878 999999999999999876542
Q ss_pred HHHHHHhcCChHHHHHHhh-cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHH
Q 037562 527 QIQAVIDSGLIGPIVNLLQ-NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENI 605 (670)
Q Consensus 527 ~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l 605 (670)
. ..+ ......++..+. ++|..++..|+..+..++.. .+... ++..|...+.+.+.+++..++.++..+
T Consensus 363 -~-~~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~---~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~l 431 (621)
T 2vgl_A 363 -H-EAV-KTHIETVINALKTERDVSVRQRAVDLLYAMCDR---SNAQQ-----IVAEMLSYLETADYSIREEIVLKVAIL 431 (621)
T ss_dssp -H-HHH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH---HHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred -H-HHH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh---hhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 1 122 246778888888 89999999999999999863 44444 456677777778888888887777776
Q ss_pred HH
Q 037562 606 LK 607 (670)
Q Consensus 606 ~~ 607 (670)
..
T Consensus 432 a~ 433 (621)
T 2vgl_A 432 AE 433 (621)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 67
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=99.07 E-value=2e-08 Score=84.67 Aligned_cols=218 Identities=17% Similarity=0.197 Sum_probs=175.6
Q ss_pred hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCC
Q 037562 322 DHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQP 401 (670)
Q Consensus 322 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~ 401 (670)
+..++..++.+|.+.-..++.+|+..+.+++...++..+-+ +..|+.++..+.........+.++..++...|
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P-- 102 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP-- 102 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--
Confidence 44578899999999889999999999999998888765543 56677788788888887888889998887643
Q ss_pred ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCC
Q 037562 402 PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGD 481 (670)
Q Consensus 402 ~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 481 (670)
..+.+.+|.+..-..-+|+.++.....+|..++..++.... +++.-+..++.+++..-+..|+..++.+..+.
T Consensus 103 --e~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~ 175 (253)
T 2db0_A 103 --ELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENS 175 (253)
T ss_dssp --HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT
T ss_pred --HHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccC
Confidence 45678888888888888999999999999999988776555 55677889999988778888888888877654
Q ss_pred chhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHH
Q 037562 482 DFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISN 561 (670)
Q Consensus 482 ~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~ 561 (670)
..... -++|.|..+|.+. +.-||..|..+|.+++..++..+..+. .-+.-+++.+..++..+..+|+.
T Consensus 176 ~~yv~-----PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 176 FKYVN-----PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp HHHHG-----GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHH
T ss_pred ccccC-----cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHH
Confidence 43322 4789999999999 999999999999999998887554332 23455667788899999999988
Q ss_pred hcCC
Q 037562 562 ATKF 565 (670)
Q Consensus 562 l~~~ 565 (670)
++..
T Consensus 244 l~l~ 247 (253)
T 2db0_A 244 LLLL 247 (253)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8653
No 68
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.01 E-value=3.1e-08 Score=108.03 Aligned_cols=306 Identities=12% Similarity=0.081 Sum_probs=208.2
Q ss_pred ccHHHHHHHhc---CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCC-------CHHHHHHHHHHHH
Q 037562 238 EILPAMVDGVW---SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQD-------YPQLQFKAAWALT 307 (670)
Q Consensus 238 ~~i~~l~~~l~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~-------~~~v~~~a~~~L~ 307 (670)
+++..+-+.+. ++++.++.-|+.+|..+..+.. .. ++..|...+.+++ .+.++..|+..|+
T Consensus 392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~----~~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG----RD-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT----HH-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc----HH-----HHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34566666665 5678889999999998866531 11 3566677675443 2578999999999
Q ss_pred HHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHH
Q 037562 308 NIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTA 387 (670)
Q Consensus 308 ~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a 387 (670)
.+..++.. . .+++.|...+.+.+..+++.|+.+|+.+..+.... + ++..++..+..+.+..+++.+
T Consensus 463 la~~GS~~--e-----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-~------ai~~LL~~~~e~~~e~vrR~a 528 (963)
T 4ady_A 463 LAAMGSAN--I-----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-E------AIHDMFTYSQETQHGNITRGL 528 (963)
T ss_dssp HHSTTCCC--H-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-H------HHHHHHHHHHHCSCHHHHHHH
T ss_pred HHhcCCCC--H-----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-H------HHHHHHHHHhccCcHHHHHHH
Confidence 98664421 1 24677888888777778888999999875433221 1 356777777677788999999
Q ss_pred HHHHHhhhcCCCCCChhhhhhhHHHHHHhhc-cCChhHHHHHHHHHHHh--ccCChHHHHHHHHcCCHHHHHH-hcCCCC
Q 037562 388 TWTLFNFCRGKPQPPFNQVRPALPVLAQLIR-SNDEEVLTDACWALSYL--SDGTNDKVQAVIEAGVYPRLVE-LLGHSS 463 (670)
Q Consensus 388 ~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~al~~L~~l--~~~~~~~~~~~~~~~~i~~L~~-lL~~~~ 463 (670)
+.+|+.+..+. ...++.++..|. +.++-+|..++.+++-- ..++... ++.|+. +..+.+
T Consensus 529 algLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a---------Iq~LL~~~~~d~~ 591 (963)
T 4ady_A 529 AVGLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA---------VKRLLHVAVSDSN 591 (963)
T ss_dssp HHHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH---------HHHHHHHHHHCSC
T ss_pred HHHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH---------HHHHHHHhccCCc
Confidence 99999887665 445677777776 46788888877776533 3333332 232333 334567
Q ss_pred ccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHH
Q 037562 464 SSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNL 543 (670)
Q Consensus 464 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~l 543 (670)
..+|..|+.+|+.++.++++ .++.++..+....++.+|..|+++++.++.+++. ..+++.|..+
T Consensus 592 d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~-------~~aid~L~~L 655 (963)
T 4ady_A 592 DDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL-------QSAIDVLDPL 655 (963)
T ss_dssp HHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc-------HHHHHHHHHH
Confidence 78999999999998876653 3455556554433999999999999999886553 1256677888
Q ss_pred hhcCChhHHHHHHHHHHHhcCCCCHH---HHHHHHHcCCcHHHHhhcc--CCChHHHHHHHHHHHH
Q 037562 544 LQNTEFDTKKEAAWAISNATKFGTHE---QIKHLVREGCVKPLCDLLL--CADPKIVTVCLEGLEN 604 (670)
Q Consensus 544 l~~~~~~v~~~a~~aL~~l~~~~~~~---~~~~l~~~~~i~~L~~ll~--~~~~~v~~~a~~~l~~ 604 (670)
..+.+..|+..|+.+|+.+....+.. .... ....|..... +.++..+..+.-+.+-
T Consensus 656 ~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~-----~l~~L~~~~~dk~~d~~~~fga~iAqGl 716 (963)
T 4ady_A 656 TKDPVDFVRQAAMIALSMILIQQTEKLNPQVAD-----INKNFLSVITNKHQEGLAKFGACVAQGI 716 (963)
T ss_dssp HTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHH-----HHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCccccchHHHH-----HHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 88999999999999999998754332 2222 2333555553 3566666666555554
No 69
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.99 E-value=1.5e-10 Score=116.30 Aligned_cols=60 Identities=20% Similarity=0.200 Sum_probs=30.6
Q ss_pred cccccccccccccccccccccCCcccCCCCccEEeEecCCCcccccc---CCcCCCCccceeeeec
Q 037562 127 TFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSG---GELSTPNLHKVQLSRW 189 (670)
Q Consensus 127 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~---~~~~~~~L~~l~i~~~ 189 (670)
.+|+|+.|.+.+|..++..... ....+|+|+.|++.+|+.+. |. ....+++|+.|+++++
T Consensus 220 ~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~--~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 220 RCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDII--PETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCC--GGGGGGGGGCTTCCEEECTTS
T ss_pred hCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCC--HHHHHHHhcCCCCCEEeccCc
Confidence 3566666666666544432211 12345666666666665332 22 1234566666666544
No 70
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.97 E-value=1.1e-10 Score=117.27 Aligned_cols=161 Identities=21% Similarity=0.158 Sum_probs=113.2
Q ss_pred ccccEEEeccCcCcccc-cccccccCCCCcEEEEecCCCCc-cccCCCccccccceeeecccccccccccchhhhccccc
Q 037562 22 MEVKISEAYNCYRLENI-LIEESSVMNNLVILCVHCCDHLI-NLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRL 99 (670)
Q Consensus 22 ~~L~~L~i~~c~~l~~~-~~~~~~~~~~L~~L~i~~c~~l~-~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L 99 (670)
.+|++|++++|. +... .......+++|++|++++|. +. ..+.....+++|++|++++|..++....+..+..+++|
T Consensus 93 ~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 93 FRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp BCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred CCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 488999999885 4432 22223678999999999995 43 34444556899999999999877753223446789999
Q ss_pred ceeccccccccceecccccccccccccccc-ccccccccccc-cccccccCCcccCCCCccEEeEecCCCcc-ccccCCc
Q 037562 100 RYMEIESCDKITEIVLVDDVVAQDEVITFR-ELKELNLLQMQ-NLISFCSGNCAFTFPSLEILVVNYCPNMK-IFSGGEL 176 (670)
Q Consensus 100 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~-~l~~~~~~~~~~~~~~L~~L~i~~C~~l~-~~p~~~~ 176 (670)
++|++++|..+.... .......+| +|++|.+.+|. .++.-........+|+|+.|++.+|..+. ..+..+.
T Consensus 171 ~~L~l~~~~~l~~~~------~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 244 (336)
T 2ast_B 171 DELNLSWCFDFTEKH------VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 244 (336)
T ss_dssp CEEECCCCTTCCHHH------HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred CEEcCCCCCCcChHH------HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh
Confidence 999999997665320 011234588 99999999997 55421111123468999999999998665 4455566
Q ss_pred CCCCccceeeeecc
Q 037562 177 STPNLHKVQLSRWD 190 (670)
Q Consensus 177 ~~~~L~~l~i~~~~ 190 (670)
.+++|++|+++++.
T Consensus 245 ~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 245 QLNYLQHLSLSRCY 258 (336)
T ss_dssp GCTTCCEEECTTCT
T ss_pred CCCCCCEeeCCCCC
Confidence 78999999998775
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.95 E-value=2.6e-09 Score=101.25 Aligned_cols=83 Identities=17% Similarity=0.176 Sum_probs=39.1
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccC-CCccccccceeeecccccccccccchhhhcccccce
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVP-SSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY 101 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~-~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~ 101 (670)
+|+.|+++++ +++.++......+++|+.|+++++..+..+++ .+..+++|++|++++|.+++.+. +..+..+++|++
T Consensus 32 ~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLLKF 109 (239)
T ss_dssp TCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTCCE
T ss_pred cccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCCCE
Confidence 4555555544 24444433334455555555555544444443 22344555555555555554431 122334555555
Q ss_pred eccccc
Q 037562 102 MEIESC 107 (670)
Q Consensus 102 L~i~~c 107 (670)
|++.++
T Consensus 110 L~l~~n 115 (239)
T 2xwt_C 110 LGIFNT 115 (239)
T ss_dssp EEEEEE
T ss_pred EeCCCC
Confidence 555544
No 72
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.95 E-value=3.6e-08 Score=87.20 Aligned_cols=226 Identities=17% Similarity=0.158 Sum_probs=172.4
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhH
Q 037562 407 RPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQ 486 (670)
Q Consensus 407 ~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 486 (670)
.+.+..+..++++.|+.++.+++.++..+....++......-..+++.++.++.+.+..+...|++++..+..+.+-.-.
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 45778899999999999999999999999866444444433347889999999999999999999999999987764444
Q ss_pred HHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCC
Q 037562 487 CIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFG 566 (670)
Q Consensus 487 ~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 566 (670)
.+. .+...+.+.+.++ ++-.+.+|+-.++-+--.++. .+++..+..++.+.+.+++..+..++.+++...
T Consensus 112 ~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 112 TFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp HHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred HHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence 333 2577888999988 999999999999998332211 235677788888999999999999999998853
Q ss_pred -CHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhh-cC
Q 037562 567 -THEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQ-SH 644 (670)
Q Consensus 567 -~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~-~~ 644 (670)
+++. -.+++.-+-++++++|+.++..|+.++..++...-... ...+.. +.......|. -.
T Consensus 182 ~D~~i-----~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~----------~~~~~~---~~~~~v~~l~~~~ 243 (265)
T 3b2a_A 182 ADSGH-----LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLEN----------VKIELL---KISRIVDGLVYRE 243 (265)
T ss_dssp SSCCC-----GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSC----------CHHHHH---HHHHHHHHGGGCS
T ss_pred CCHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHh----------HHHHHH---HHHHHHHHHHHhc
Confidence 2221 23477788889999999999999999999987643321 122222 3344456676 67
Q ss_pred CCHHHHHHHHHHHHHh
Q 037562 645 DDNGISEKAVEILETY 660 (670)
Q Consensus 645 ~~~~v~~~a~~~l~~~ 660 (670)
..|.++.+|..+.+.+
T Consensus 244 ~~~~~~~ka~~v~~~l 259 (265)
T 3b2a_A 244 GAPIIRLKAKKVSDLI 259 (265)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHH
Confidence 7899999998776654
No 73
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.95 E-value=3e-09 Score=97.39 Aligned_cols=147 Identities=14% Similarity=0.163 Sum_probs=109.6
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM 102 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L 102 (670)
+|+.|.+.++ +++.++. ...+++|++|++++| .+..++ ....+++|++|++++|. ++... +..+..+++|++|
T Consensus 45 ~L~~L~l~~n-~i~~l~~--l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~-l~~~~-~~~l~~l~~L~~L 117 (197)
T 4ezg_A 45 SLTYITLANI-NVTDLTG--IEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKD-VTSDK-IPNLSGLTSLTLL 117 (197)
T ss_dssp TCCEEEEESS-CCSCCTT--GGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTT-CBGGG-SCCCTTCTTCCEE
T ss_pred CccEEeccCC-CccChHH--HhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCc-cCccc-ChhhcCCCCCCEE
Confidence 8999999887 4666662 578899999999999 565543 45678999999999974 44321 2456789999999
Q ss_pred ccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCcc
Q 037562 103 EIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLH 182 (670)
Q Consensus 103 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~ 182 (670)
++++|.--...+ .....+++|+.|.+++|..++.++. ...+|+|+.|++.+|+ +..+| ....+++|+
T Consensus 118 ~Ls~n~i~~~~~--------~~l~~l~~L~~L~L~~n~~i~~~~~---l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~ 184 (197)
T 4ezg_A 118 DISHSAHDDSIL--------TKINTLPKVNSIDLSYNGAITDIMP---LKTLPELKSLNIQFDG-VHDYR-GIEDFPKLN 184 (197)
T ss_dssp ECCSSBCBGGGH--------HHHTTCSSCCEEECCSCTBCCCCGG---GGGCSSCCEEECTTBC-CCCCT-TGGGCSSCC
T ss_pred EecCCccCcHhH--------HHHhhCCCCCEEEccCCCCccccHh---hcCCCCCCEEECCCCC-CcChH-HhccCCCCC
Confidence 999885221111 1234689999999999987777753 5678999999999985 56666 556689999
Q ss_pred ceeeeec
Q 037562 183 KVQLSRW 189 (670)
Q Consensus 183 ~l~i~~~ 189 (670)
.|++++.
T Consensus 185 ~L~l~~N 191 (197)
T 4ezg_A 185 QLYAFSQ 191 (197)
T ss_dssp EEEECBC
T ss_pred EEEeeCc
Confidence 9988654
No 74
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.92 E-value=5.3e-08 Score=95.56 Aligned_cols=278 Identities=11% Similarity=0.035 Sum_probs=166.5
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHH
Q 037562 239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTK 318 (670)
Q Consensus 239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 318 (670)
..+.+++.++++|...+.-..-.+..++... .+.. + +++.+.+=+++++ +-+|-.|+++++++.. ++..+
T Consensus 69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e~i--L----v~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~~ 138 (355)
T 3tjz_B 69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-EDVI--I----VTSSLTKDMTGKE-DSYRGPAVRALCQITD--STMLQ 138 (355)
T ss_dssp HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SCGG--G----GHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHHH--H----HHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHHH
Confidence 4567788889999999999999998886652 2221 1 5677888889998 8999999999999986 33333
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC
Q 037562 319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGK 398 (670)
Q Consensus 319 ~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~ 398 (670)
. +.+.+.+.+.+.++.||..|+.+...+....|+.. .+.+..+-.++ .+.++.++.+|..++..+...+
T Consensus 139 ~-----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 139 A-----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp H-----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC
T ss_pred H-----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc
Confidence 3 34667778899999999999999999998777632 24788888888 7788899999999999998764
Q ss_pred CCCChhhhhhhHHHHHHhhccC---ChhHHHHHHHHHHHhccCC-hHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHH
Q 037562 399 PQPPFNQVRPALPVLAQLIRSN---DEEVLTDACWALSYLSDGT-NDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTI 474 (670)
Q Consensus 399 ~~~~~~~~~~~i~~L~~lL~~~---~~~v~~~al~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L 474 (670)
...+..++..+... ++-.+...++.+..+...+ +. ....+++.+..+|++.++.|..+|+++|
T Consensus 208 --------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I 274 (355)
T 3tjz_B 208 --------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAI 274 (355)
T ss_dssp --------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHH
T ss_pred --------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 22445555555443 5666666777776666543 22 2236778888999999999999999999
Q ss_pred HHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHH
Q 037562 475 RNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKE 554 (670)
Q Consensus 475 ~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~ 554 (670)
..+...... . ...++..+..++.+. ++++|..|...|..+....|...+. .-..+.+++.++|..+...
T Consensus 275 ~~l~~~~~~----~-~~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~ 343 (355)
T 3tjz_B 275 VNLPGCSAK----E-LAPAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATL 343 (355)
T ss_dssp TC----------------CCCTHHHHHHSS-SSSSHHHHHHCC-------------------------------------
T ss_pred HhccCCCHH----H-HHHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHH
Confidence 888652221 1 124567777888888 8999999999999998766664432 3345667777888877777
Q ss_pred HHHHHHH
Q 037562 555 AAWAISN 561 (670)
Q Consensus 555 a~~aL~~ 561 (670)
|..+|..
T Consensus 344 Aittllk 350 (355)
T 3tjz_B 344 AITTLLK 350 (355)
T ss_dssp -------
T ss_pred HHHHhhh
Confidence 7766654
No 75
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.91 E-value=1.7e-08 Score=110.76 Aligned_cols=217 Identities=14% Similarity=0.097 Sum_probs=155.7
Q ss_pred cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCC-Cch
Q 037562 280 SGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFV-KLLASPSVDVRKQTVWALGNVAGD-SPR 357 (670)
Q Consensus 280 ~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~-~lL~~~~~~v~~~a~~~L~~l~~~-~~~ 357 (670)
..++| +++.|++++ ++.|..|+++|++++. ++..++.+...+++..++ .+|.+++.++|..|+++|.||+.+ .+.
T Consensus 34 ~~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 34 DKILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp HTTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred hhHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence 33444 567789999 8999999999999997 899999999999998765 578899999999999999999954 466
Q ss_pred hHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhcc
Q 037562 358 CRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSD 437 (670)
Q Consensus 358 ~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~ 437 (670)
....+...|++++|..++... ...+........... ......+ ..+...++.+|.+++.
T Consensus 111 ~~~~l~~~~il~~L~~~l~~~---------~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~l~lL~~L~e 169 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKAV---------LETLTTSEPPFSKLL-KAQQRLV-----------WDITGSLLVLIGLLAL 169 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHHH---------HHHHHCBTTBGGGSC-HHHHHHH-----------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHhh---------HHHHhhhcccccccc-HHHHHHH-----------HHHHHHHHHHHHHHHh
Confidence 778888999999999998321 111222111110000 0001111 2344567778888888
Q ss_pred CChHHHHHHHHcCCHHHHHHhcCCC---CccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhh--ccCCchhHHHH
Q 037562 438 GTNDKVQAVIEAGVYPRLVELLGHS---SSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDML--VHNHEESIKKE 512 (670)
Q Consensus 438 ~~~~~~~~~~~~~~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l--~~~~~~~v~~~ 512 (670)
.++.....+...+.++.++..|.+. ..+++..|+.+|..++..++...+.+.+.+....+..++ ... +...+..
T Consensus 170 ~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~l 248 (684)
T 4gmo_A 170 ARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVM 248 (684)
T ss_dssp HCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHH
T ss_pred CCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHH
Confidence 7777777788888999999888543 346899999999999999988888777766543322222 233 3445778
Q ss_pred HHHHHHHhh
Q 037562 513 VSWIISNIT 521 (670)
Q Consensus 513 a~~~L~~l~ 521 (670)
+++++.|+.
T Consensus 249 a~giL~Ni~ 257 (684)
T 4gmo_A 249 ACGVLHNVF 257 (684)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhHh
Confidence 899999874
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.88 E-value=7.8e-09 Score=97.97 Aligned_cols=154 Identities=12% Similarity=0.068 Sum_probs=110.4
Q ss_pred CccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhccccc
Q 037562 21 GMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRL 99 (670)
Q Consensus 21 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L 99 (670)
..+|++|++.++..++.++......+++|++|++++|..+..+++. +..+++|++|+++++. ++.+ +.+..+++|
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~l---p~~~~l~~L 129 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMF---PDLTKVYST 129 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSC---CCCTTCCBC
T ss_pred CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccc---ccccccccc
Confidence 3489999999997788887655578899999999998889888754 4578899999999884 5554 225667777
Q ss_pred c---eeccccccccceeccccccccccccccccccc-cccccccccccccccCCcccCCCCccEEeEecCCCccccccC-
Q 037562 100 R---YMEIESCDKITEIVLVDDVVAQDEVITFRELK-ELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGG- 174 (670)
Q Consensus 100 ~---~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~- 174 (670)
+ +|++++++.++.++. .....+++|+ .|.+.+. +++.++.. ....++|+.|++.+++.++.+|..
T Consensus 130 ~~L~~L~l~~N~~l~~i~~-------~~~~~l~~L~~~L~l~~n-~l~~i~~~--~~~~~~L~~L~L~~n~~l~~i~~~~ 199 (239)
T 2xwt_C 130 DIFFILEITDNPYMTSIPV-------NAFQGLCNETLTLKLYNN-GFTSVQGY--AFNGTKLDAVYLNKNKYLTVIDKDA 199 (239)
T ss_dssp CSEEEEEEESCTTCCEECT-------TTTTTTBSSEEEEECCSC-CCCEECTT--TTTTCEEEEEECTTCTTCCEECTTT
T ss_pred ccccEEECCCCcchhhcCc-------ccccchhcceeEEEcCCC-CCcccCHh--hcCCCCCCEEEcCCCCCcccCCHHH
Confidence 7 999988877776642 1123467777 7777664 35555543 223367888888888777777654
Q ss_pred CcCC-CCccceeeee
Q 037562 175 ELST-PNLHKVQLSR 188 (670)
Q Consensus 175 ~~~~-~~L~~l~i~~ 188 (670)
...+ ++|+.|++++
T Consensus 200 ~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 200 FGGVYSGPSLLDVSQ 214 (239)
T ss_dssp TTTCSBCCSEEECTT
T ss_pred hhccccCCcEEECCC
Confidence 3446 7888887765
No 77
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.88 E-value=7.8e-08 Score=94.38 Aligned_cols=301 Identities=16% Similarity=0.083 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc
Q 037562 298 LQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE 377 (670)
Q Consensus 298 v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~ 377 (670)
.+....+++.-+..|.+-...... .+...+++++.+++..++..+--.+.+++...++. +. ++..+.+-+ +
T Consensus 44 c~~~l~kll~l~~~G~~f~~~e~t--~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---iL---v~Nsl~kDl-~ 114 (355)
T 3tjz_B 44 CAHILTKILYLINQGEHLGTTEAT--EAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---II---VTSSLTKDM-T 114 (355)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHH--HHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---GG---GHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHCCCCCchhHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---HH---HHHHHHhhc-C
Confidence 344566666666654322111111 23566788999999999999999999988664332 21 477788888 7
Q ss_pred cCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHH
Q 037562 378 NANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVE 457 (670)
Q Consensus 378 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~ 457 (670)
++++-++..|+.+++++.... ....+.+.+.+.+.+.++.|+..|+.+...+....++..+ +++..+..
T Consensus 115 ~~N~~iR~lALRtL~~I~~~~------m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~ 183 (355)
T 3tjz_B 115 GKEDSYRGPAVRALCQITDST------MLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQE 183 (355)
T ss_dssp SSCHHHHHHHHHHHHHHCCTT------THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHH
T ss_pred CCcHhHHHHHHHHHhcCCCHH------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHH
Confidence 788899999999999998763 4567788889999999999999999999999987776543 78999999
Q ss_pred hcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCC--chhHHHHHHHHHHHhhcCC-HHHHHHHHhc
Q 037562 458 LLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNH--EESIKKEVSWIISNITCGN-REQIQAVIDS 534 (670)
Q Consensus 458 lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~--~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~ 534 (670)
++.+.++.++..|+.++..+...+.. .+..++..+.... ++..+......++.++..+ +. ...
T Consensus 184 ll~d~n~~V~~~Al~lL~ei~~~d~~---------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~ 249 (355)
T 3tjz_B 184 AASSDNIMVQYHALGLLYHVRKNDRL---------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDS 249 (355)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHTTCHH---------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC---------------
T ss_pred HhcCCCccHHHHHHHHHHHHHhhchH---------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHH
Confidence 99999999999999999999875432 2233344443321 3434433333333333333 22 223
Q ss_pred CChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhc
Q 037562 535 GLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMN 614 (670)
Q Consensus 535 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~ 614 (670)
.+++.+...+++.++-|..+|+.++..+... .... -..++..|..++.+++++++..|+..|..+....+..
T Consensus 250 ~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~-~~~~-----~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~-- 321 (355)
T 3tjz_B 250 PLFDFIESCLRNKHEMVVYEAASAIVNLPGC-SAKE-----LAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSA-- 321 (355)
T ss_dssp -------CCCCCSSHHHHHHHHHHHTC-----------------CCCTHHHHHHSSSSSSHHHHHHCC------------
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhccCC-CHHH-----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHH--
Confidence 5667777888889999999999999998653 1111 1346888889999999999999999999888654432
Q ss_pred cCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHH
Q 037562 615 TGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEI 656 (670)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~ 656 (670)
+.++ -..|+.+..++|..+...|+..
T Consensus 322 --------------v~~~--n~~ie~li~d~n~sI~t~Aitt 347 (355)
T 3tjz_B 322 --------------VTAC--NLDLENLVTDANRSIATLAITT 347 (355)
T ss_dssp ------------------------------------------
T ss_pred --------------HHHH--HHHHHHHccCCcHhHHHHHHHH
Confidence 2221 2346777788888877776653
No 78
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=98.88 E-value=3.5e-07 Score=99.85 Aligned_cols=291 Identities=13% Similarity=0.066 Sum_probs=197.4
Q ss_pred hHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhc---CCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHH
Q 037562 252 NSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLM---RQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPI 328 (670)
Q Consensus 252 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~---~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~ 328 (670)
...+..|+..|.-+-..+ .+ +++..|-+.|. +++ +.++.-|+.+|+.+..+... . ++..
T Consensus 372 ~~~k~sA~aSLGlIh~g~-~~--------~gl~~L~~yL~~~~s~~-~~ik~GAllaLGli~ag~~~---~-----~~~l 433 (963)
T 4ady_A 372 NWAKFTATASLGVIHKGN-LL--------EGKKVMAPYLPGSRASS-RFIKGGSLYGLGLIYAGFGR---D-----TTDY 433 (963)
T ss_dssp THHHHHHHHHHHHHTSSC-TT--------THHHHHTTTSTTSCCSC-HHHHHHHHHHHHHHTTTTTH---H-----HHHH
T ss_pred hHHHHHHHHHhhhhccCc-hH--------HHHHHHHHhccccCCCc-HHHHHHHHHHHHHhcCCCcH---H-----HHHH
Confidence 344566666666654432 11 24666666665 445 79999999999999875432 1 3567
Q ss_pred HHHhhCCCC--------HHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCC
Q 037562 329 FVKLLASPS--------VDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQ 400 (670)
Q Consensus 329 L~~lL~~~~--------~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~ 400 (670)
|...+.+++ +.++..|+.+|+-+..+... +. ++..|...+ .+.+..++..|+.+|..+..+..+
T Consensus 434 L~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~--ee-----v~e~L~~~L-~dd~~~~~~~AalALGli~vGTgn 505 (963)
T 4ady_A 434 LKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN--IE-----VYEALKEVL-YNDSATSGEAAALGMGLCMLGTGK 505 (963)
T ss_dssp HHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC--HH-----HHHHHHHHH-HTCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC--HH-----HHHHHHHHH-hcCCHHHHHHHHHHHhhhhcccCC
Confidence 777776544 67888999999997654421 11 366677777 444455666888888876444321
Q ss_pred CChhhhhhhHHHHHHhh-ccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcC-CCCccchhHHHHHHHHhh
Q 037562 401 PPFNQVRPALPVLAQLI-RSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLG-HSSSSVLTPALRTIRNIV 478 (670)
Q Consensus 401 ~~~~~~~~~i~~L~~lL-~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~ 478 (670)
..++..|+..+ .+.+..++..++.+|+.+....++. ++.++..|. +.++-+|..++.+++.-.
T Consensus 506 ------~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~---------~~~li~~L~~~~dp~vRygaa~alglAy 570 (963)
T 4ady_A 506 ------PEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL---------ADDLITKMLASDESLLRYGGAFTIALAY 570 (963)
T ss_dssp ------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG---------GHHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH---------HHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 33445555544 3557889999999999887666543 344555554 467778888888887555
Q ss_pred cCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHh-hcCChhHHHHHHH
Q 037562 479 KGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLL-QNTEFDTKKEAAW 557 (670)
Q Consensus 479 ~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~v~~~a~~ 557 (670)
.+.... ..++.|+..+.+..+..+|+.|+.+|+.+..+.++ .++.++..+ ++.++.+|..|+.
T Consensus 571 aGTGn~-------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAal 634 (963)
T 4ady_A 571 AGTGNN-------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAF 634 (963)
T ss_dssp TTSCCH-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHH
T ss_pred cCCCCH-------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHH
Confidence 443321 13555556655444788999999999999776553 456666644 4789999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHH
Q 037562 558 AISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILK 607 (670)
Q Consensus 558 aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~ 607 (670)
||+.++...... .+++.|..+.++.+..|+..|+.+|+.+..
T Consensus 635 ALGli~aGn~~~--------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 635 ALGIACAGKGLQ--------SAIDVLDPLTKDPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp HHHHHTSSSCCH--------HHHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred HHHHhccCCCcH--------HHHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence 999997642211 157788889999999999999999998764
No 79
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.85 E-value=6.7e-07 Score=75.56 Aligned_cols=215 Identities=16% Similarity=0.185 Sum_probs=168.8
Q ss_pred cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCchh
Q 037562 280 SGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLA-SPSVDVRKQTVWALGNVAGDSPRC 358 (670)
Q Consensus 280 ~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~ 358 (670)
..++..++.+|+++- ..||.+|+.++..++...++....++ ..|+-+++ ++....-+....+++.++...|+.
T Consensus 31 ~~~l~~lI~~LDDDl-wtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~ 104 (253)
T 2db0_A 31 ESVLKKLIELLDDDL-WTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL 104 (253)
T ss_dssp HHHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhccHH-HHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence 447888999999888 59999999999999997777666553 45666654 567777778889999999777764
Q ss_pred HHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 037562 359 RDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDG 438 (670)
Q Consensus 359 ~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~ 438 (670)
-.. .+|.+..-. .-.++.++.+..++|..+....| ....+++.-+..++.++|..=+..++..++.+..+
T Consensus 105 v~~-----vVp~lfany-rigd~kikIn~~yaLeeIaranP----~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen 174 (253)
T 2db0_A 105 VKS-----MIPVLFANY-RIGDEKTKINVSYALEEIAKANP----MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN 174 (253)
T ss_dssp HHH-----HHHHHHHHS-CCCSHHHHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT
T ss_pred HHh-----hHHHHHHHH-hcCCccceecHHHHHHHHHHhCh----HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc
Confidence 332 366666665 55699999999999999998753 33466777888999999988888899999988877
Q ss_pred ChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHH
Q 037562 439 TNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIIS 518 (670)
Q Consensus 439 ~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~ 518 (670)
...... -+++.+..+|.+.+.-||..|..+|.+++.-++.... ++...++-+++. +..++.....+++
T Consensus 175 ~~~yv~-----PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRk------ii~~kl~e~~D~-S~lv~~~V~egL~ 242 (253)
T 2db0_A 175 SFKYVN-----PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRK------VVIKRLEELNDT-SSLVNKTVKEGIS 242 (253)
T ss_dssp THHHHG-----GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHH------HHHHHHHHCCCS-CHHHHHHHHHHHH
T ss_pred CccccC-----cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHH------HHHHHHHHhcCc-HHHHHHHHHHHHH
Confidence 554333 6889999999999999999999999999998877544 334455667777 7888888888888
Q ss_pred Hhhc
Q 037562 519 NITC 522 (670)
Q Consensus 519 ~l~~ 522 (670)
.++.
T Consensus 243 rl~l 246 (253)
T 2db0_A 243 RLLL 246 (253)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 80
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.84 E-value=2.2e-08 Score=97.69 Aligned_cols=58 Identities=19% Similarity=0.150 Sum_probs=22.8
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccc-cCCCccccccceeeecccc
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINL-VPSSTSFQNLTNLVVSHCK 82 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~-~~~~~~~~~L~~L~i~~c~ 82 (670)
+|+.|.++++ +++.++......+++|++|+++++. +..+ +..+..+++|++|+++++.
T Consensus 33 ~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 33 ASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp TCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCT
T ss_pred CceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCC
Confidence 4445544443 2333332222334444444444432 2232 2223334444444444443
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.81 E-value=2e-08 Score=98.98 Aligned_cols=76 Identities=12% Similarity=0.122 Sum_probs=35.9
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM 102 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L 102 (670)
+|+.|++++| +++.++. ...+++|++|+++++. +..++ ....+++|++|++++|. ++.+ +.+..+++|++|
T Consensus 64 ~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L 134 (308)
T 1h6u_A 64 NLIGLELKDN-QITDLAP--LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLTSTQ-ITDV---TPLAGLSNLQVL 134 (308)
T ss_dssp TCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECTTSC-CCCC---GGGTTCTTCCEE
T ss_pred CCCEEEccCC-cCCCChh--HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEECCCCC-CCCc---hhhcCCCCCCEE
Confidence 5555555554 3443333 2445555555555553 33332 23345555555555552 3332 224445555555
Q ss_pred ccccc
Q 037562 103 EIESC 107 (670)
Q Consensus 103 ~i~~c 107 (670)
++++|
T Consensus 135 ~l~~n 139 (308)
T 1h6u_A 135 YLDLN 139 (308)
T ss_dssp ECCSS
T ss_pred ECCCC
Confidence 55544
No 82
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.80 E-value=2.3e-08 Score=104.29 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=20.6
Q ss_pred CCCCccEEeEecCCCccccccCC-cCCCCccceeeee
Q 037562 153 TFPSLEILVVNYCPNMKIFSGGE-LSTPNLHKVQLSR 188 (670)
Q Consensus 153 ~~~~L~~L~i~~C~~l~~~p~~~-~~~~~L~~l~i~~ 188 (670)
.+++|+.|+++++ ++..+|... ..+++|+.|++++
T Consensus 253 ~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 253 NLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp TCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCS
T ss_pred CCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCC
Confidence 4566666666665 455555433 3466777776653
No 83
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.80 E-value=4.1e-08 Score=89.73 Aligned_cols=128 Identities=23% Similarity=0.202 Sum_probs=96.2
Q ss_pred CccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccc
Q 037562 21 GMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLR 100 (670)
Q Consensus 21 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~ 100 (670)
..+|++|.+.+| .++.++. ...+++|++|++++|.--...+..+..+++|+.|++++|. ++... +..+..+++|+
T Consensus 65 l~~L~~L~l~~n-~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~-~~~l~~l~~L~ 139 (197)
T 4ezg_A 65 AHNIKDLTINNI-HATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA-HDDSI-LTKINTLPKVN 139 (197)
T ss_dssp CTTCSEEEEESC-CCSCCGG--GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSB-CBGGG-HHHHTTCSSCC
T ss_pred CCCCCEEEccCC-CCCcchh--hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCc-cCcHh-HHHHhhCCCCC
Confidence 348999999999 6666553 4679999999999985333356667789999999999984 33321 35567899999
Q ss_pred eeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCC
Q 037562 101 YMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCP 166 (670)
Q Consensus 101 ~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~ 166 (670)
+|++++|..+..+. ....+|+|+.|.+.++. ++.+. ....+|+|+.|++.+.+
T Consensus 140 ~L~L~~n~~i~~~~---------~l~~l~~L~~L~l~~n~-i~~~~---~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 140 SIDLSYNGAITDIM---------PLKTLPELKSLNIQFDG-VHDYR---GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EEECCSCTBCCCCG---------GGGGCSSCCEEECTTBC-CCCCT---TGGGCSSCCEEEECBC-
T ss_pred EEEccCCCCccccH---------hhcCCCCCCEEECCCCC-CcChH---HhccCCCCCEEEeeCcc
Confidence 99999998666552 23468999999999874 55543 24568999999998754
No 84
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.79 E-value=3.9e-08 Score=95.96 Aligned_cols=125 Identities=16% Similarity=0.183 Sum_probs=67.6
Q ss_pred ccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceecccccccccc
Q 037562 44 SVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQD 123 (670)
Q Consensus 44 ~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 123 (670)
..+++|+.|+++++. +..++. ...+++|++|++++| +++.+ +.+..+++|++|++++|. +..+ .
T Consensus 87 ~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L~~n-~i~~~---~~l~~l~~L~~L~l~~n~-l~~~---------~ 150 (291)
T 1h6t_A 87 ANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSLEHN-GISDI---NGLVHLPQLESLYLGNNK-ITDI---------T 150 (291)
T ss_dssp TTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEECTTS-CCCCC---GGGGGCTTCCEEECCSSC-CCCC---------G
T ss_pred ccCCCCCEEECCCCc-CCCChh-hccCCCCCEEECCCC-cCCCC---hhhcCCCCCCEEEccCCc-CCcc---------h
Confidence 344455555554442 333222 344455555555554 23332 334455555555555542 2211 1
Q ss_pred ccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCccceeeeecc
Q 037562 124 EVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRWD 190 (670)
Q Consensus 124 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~~~ 190 (670)
....+++|+.|.++++ .++.+.. ...+++|+.|++.+| ++..+|. ...+++|+.|++++.+
T Consensus 151 ~l~~l~~L~~L~L~~N-~l~~~~~---l~~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 151 VLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQE 211 (291)
T ss_dssp GGGGCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred hhccCCCCCEEEccCC-ccccchh---hcCCCccCEEECCCC-cCCCChh-hccCCCCCEEECcCCc
Confidence 2335677777777766 3444432 446788888888877 4666664 5567888888887643
No 85
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.78 E-value=5.7e-08 Score=93.83 Aligned_cols=61 Identities=25% Similarity=0.212 Sum_probs=41.0
Q ss_pred ccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccC-CcCCCCccceeeeec
Q 037562 126 ITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGG-ELSTPNLHKVQLSRW 189 (670)
Q Consensus 126 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~-~~~~~~L~~l~i~~~ 189 (670)
..+++|+.|.+.++ .++.++.. ....+++|+.|++.++ +++.+|.+ ...+++|+.|++++.
T Consensus 154 ~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 154 DKLTSLKELRLYNN-QLKRVPEG-AFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp TTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCcccceeEecCC-cCcEeChh-HhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCC
Confidence 34677777777765 34444432 2345788899999887 56777765 345788888888654
No 86
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.77 E-value=2.4e-08 Score=109.47 Aligned_cols=198 Identities=13% Similarity=0.058 Sum_probs=149.5
Q ss_pred hhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHH-HHhcCCCCccchhHHHHHHHHhhcCC-chhh
Q 037562 408 PALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRL-VELLGHSSSSVLTPALRTIRNIVKGD-DFQT 485 (670)
Q Consensus 408 ~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L-~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~ 485 (670)
.++| +++.|+++++..|..|+++|++++. ++...+.+...+++..+ ..+|.+++.+||..|+++|+||+... .+.+
T Consensus 35 ~i~P-ll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 35 KILP-VLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp TTHH-HHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hHHH-HHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 3444 5567899999999999999999996 45556667777887765 56788899999999999999999753 5667
Q ss_pred HHHHhCCChHHHHHhhccCC-------------c-------hhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh
Q 037562 486 QCIINCGALPYFLDMLVHNH-------------E-------ESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ 545 (670)
Q Consensus 486 ~~l~~~~~~~~L~~~l~~~~-------------~-------~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~ 545 (670)
..++..|+++.|..++.... . ..+...++.+|.+++.++.+....+.+.+.++.++..+.
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~ 192 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI 192 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence 77889999999999885310 0 123456778889998888888888888899999999886
Q ss_pred cC---ChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhc--cCCChHHHHHHHHHHHHHHHh
Q 037562 546 NT---EFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLL--LCADPKIVTVCLEGLENILKV 608 (670)
Q Consensus 546 ~~---~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll--~~~~~~v~~~a~~~l~~l~~~ 608 (670)
+. ..+++..|+.+|..++.. +++....+.+.+....+.-++ ...+...+..++..+.+++..
T Consensus 193 ~~~~~~~~v~~~a~~~L~~ls~d-n~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~~~ 259 (684)
T 4gmo_A 193 SADIAPQDIYEEAISCLTTLSED-NLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVFTS 259 (684)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHhcc-CHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHhhh
Confidence 33 358999999999999987 677777777766543322222 223334466777888888654
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.77 E-value=2.7e-08 Score=98.06 Aligned_cols=77 Identities=22% Similarity=0.286 Sum_probs=63.4
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM 102 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L 102 (670)
+|++|.+.+| +++.++. ...+++|+.|++++| .+..+++ ...+++|++|++++|. ++.+ +.+..+++|++|
T Consensus 42 ~L~~L~l~~~-~i~~l~~--~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~---~~~~~l~~L~~L 112 (308)
T 1h6u_A 42 GITTLSAFGT-GVTTIEG--VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNV---SAIAGLQSIKTL 112 (308)
T ss_dssp TCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCC---GGGTTCTTCCEE
T ss_pred CcCEEEeeCC-CccCchh--hhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc-CCCc---hhhcCCCCCCEE
Confidence 8999999988 5666653 467999999999998 4667766 7789999999999995 6665 467789999999
Q ss_pred cccccc
Q 037562 103 EIESCD 108 (670)
Q Consensus 103 ~i~~c~ 108 (670)
++++|.
T Consensus 113 ~l~~n~ 118 (308)
T 1h6u_A 113 DLTSTQ 118 (308)
T ss_dssp ECTTSC
T ss_pred ECCCCC
Confidence 998885
No 88
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.77 E-value=4.3e-08 Score=105.42 Aligned_cols=144 Identities=17% Similarity=0.161 Sum_probs=97.5
Q ss_pred ccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccce
Q 037562 22 MEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY 101 (670)
Q Consensus 22 ~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~ 101 (670)
.+|+.|.+++| .+..++. ...+++|+.|++++|. +..++ .+..+++|+.|++++|. +..+ +.+..+++|+.
T Consensus 65 ~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~N~-l~~l---~~l~~l~~L~~ 135 (605)
T 1m9s_A 65 PNVTKLFLNGN-KLTDIKP--LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSLEHNG-ISDI---NGLVHLPQLES 135 (605)
T ss_dssp TTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEECTTSC-CCCC---GGGGGCTTCSE
T ss_pred CCCCEEEeeCC-CCCCChh--hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEEecCCC-CCCC---ccccCCCccCE
Confidence 37888888777 3555554 4578888888888874 55544 46677888888888874 4443 45677888888
Q ss_pred eccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCc
Q 037562 102 MEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNL 181 (670)
Q Consensus 102 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L 181 (670)
|++++|. +..+ .....+++|+.|.|+++. +..+.. ...+++|+.|++++| .+..+|. +..+++|
T Consensus 136 L~Ls~N~-l~~l---------~~l~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N-~i~~l~~-l~~l~~L 199 (605)
T 1m9s_A 136 LYLGNNK-ITDI---------TVLSRLTKLDTLSLEDNQ-ISDIVP---LAGLTKLQNLYLSKN-HISDLRA-LAGLKNL 199 (605)
T ss_dssp EECCSSC-CCCC---------GGGGSCTTCSEEECCSSC-CCCCGG---GTTCTTCCEEECCSS-CCCBCGG-GTTCTTC
T ss_pred EECCCCc-cCCc---------hhhcccCCCCEEECcCCc-CCCchh---hccCCCCCEEECcCC-CCCCChH-HccCCCC
Confidence 8888774 3322 123457888888888763 444433 456788888888887 4565653 4557888
Q ss_pred cceeeeecc
Q 037562 182 HKVQLSRWD 190 (670)
Q Consensus 182 ~~l~i~~~~ 190 (670)
+.|++++.+
T Consensus 200 ~~L~L~~N~ 208 (605)
T 1m9s_A 200 DVLELFSQE 208 (605)
T ss_dssp SEEECCSEE
T ss_pred CEEEccCCc
Confidence 888886544
No 89
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.76 E-value=4.4e-08 Score=102.12 Aligned_cols=87 Identities=15% Similarity=0.185 Sum_probs=40.9
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccC-CCccccccceeeecccccccccccchhhhcccccce
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVP-SSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY 101 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~-~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~ 101 (670)
+|++|+++++ +++.++......+++|++|+++++ .+..+++ .+..+++|++|+++++. ++.+ +...+..+++|++
T Consensus 89 ~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~-~~~~~~~l~~L~~ 164 (440)
T 3zyj_A 89 HLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNP-IESI-PSYAFNRIPSLRR 164 (440)
T ss_dssp SCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCC-CCEE-CTTTTTTCTTCCE
T ss_pred CCCEEECCCC-cCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCc-cccc-CHHHhhhCcccCE
Confidence 5555555544 244433333344555555555554 3444443 23445555555555542 3322 1123345555555
Q ss_pred ecccccccccee
Q 037562 102 MEIESCDKITEI 113 (670)
Q Consensus 102 L~i~~c~~l~~~ 113 (670)
|++.+|..+..+
T Consensus 165 L~l~~~~~l~~i 176 (440)
T 3zyj_A 165 LDLGELKRLSYI 176 (440)
T ss_dssp EECCCCTTCCEE
T ss_pred eCCCCCCCccee
Confidence 555555544443
No 90
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.76 E-value=2.7e-08 Score=100.20 Aligned_cols=145 Identities=18% Similarity=0.166 Sum_probs=78.8
Q ss_pred ccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccce
Q 037562 22 MEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY 101 (670)
Q Consensus 22 ~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~ 101 (670)
.+|+.|++++|. ++.++. ...+++|+.|+++++. +..+++ ...+++|++|++++|. ++.+ +.+..+++|++
T Consensus 177 ~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~n~-l~~~---~~~~~l~~L~~ 247 (347)
T 4fmz_A 177 TDLYSLSLNYNQ-IEDISP--LASLTSLHYFTAYVNQ-ITDITP-VANMTRLNSLKIGNNK-ITDL---SPLANLSQLTW 247 (347)
T ss_dssp TTCSEEECTTSC-CCCCGG--GGGCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSC-CCCC---GGGTTCTTCCE
T ss_pred CCCCEEEccCCc-cccccc--ccCCCccceeecccCC-CCCCch-hhcCCcCCEEEccCCc-cCCC---cchhcCCCCCE
Confidence 478888888774 554443 3566777777777763 333333 4556777777777763 3333 22556677777
Q ss_pred eccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCc
Q 037562 102 MEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNL 181 (670)
Q Consensus 102 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L 181 (670)
|++++|. +..+. ....+++|+.|.+.++ +++.++. ...+|+|+.|++++|+--...|.....+++|
T Consensus 248 L~l~~n~-l~~~~---------~~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 313 (347)
T 4fmz_A 248 LEIGTNQ-ISDIN---------AVKDLTKLKMLNVGSN-QISDISV---LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313 (347)
T ss_dssp EECCSSC-CCCCG---------GGTTCTTCCEEECCSS-CCCCCGG---GGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred EECCCCc-cCCCh---------hHhcCCCcCEEEccCC-ccCCChh---hcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence 7776663 32221 1234556666666655 3333321 3345556666666554322233333345555
Q ss_pred cceeeeec
Q 037562 182 HKVQLSRW 189 (670)
Q Consensus 182 ~~l~i~~~ 189 (670)
+.|+++++
T Consensus 314 ~~L~L~~n 321 (347)
T 4fmz_A 314 TTLFLSQN 321 (347)
T ss_dssp SEEECCSS
T ss_pred CEEEccCC
Confidence 55555443
No 91
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.74 E-value=1.5e-08 Score=110.58 Aligned_cols=132 Identities=17% Similarity=0.205 Sum_probs=70.2
Q ss_pred cCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceeccccccccccc
Q 037562 45 VMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDE 124 (670)
Q Consensus 45 ~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 124 (670)
.+++|+.|++++|.-....+.....+++|++|++++|.--... .+..+..+++|++|++++|. +..++ +..
T Consensus 422 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~-------~~~ 492 (606)
T 3vq2_A 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT-LSNVFANTTNLTFLDLSKCQ-LEQIS-------WGV 492 (606)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE-ECSCCTTCTTCCEEECTTSC-CCEEC-------TTT
T ss_pred ccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc-hHHhhccCCCCCEEECCCCc-CCccC-------hhh
Confidence 3444444444444322222233344455555555555221111 12233455555555555552 22221 112
Q ss_pred cccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCC-Cccceeeee
Q 037562 125 VITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTP-NLHKVQLSR 188 (670)
Q Consensus 125 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~-~L~~l~i~~ 188 (670)
...+++|+.|.++++ +++.+... ....+++|+.|++++|. ++.+|.+...+| +|+.|++++
T Consensus 493 ~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 493 FDTLHRLQLLNMSHN-NLLFLDSS-HYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTN 554 (606)
T ss_dssp TTTCTTCCEEECCSS-CCSCEEGG-GTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCS
T ss_pred hcccccCCEEECCCC-cCCCcCHH-HccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccC
Confidence 345677888888777 34443221 24557888888888885 778888766666 588888865
No 92
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.73 E-value=5.3e-08 Score=94.96 Aligned_cols=84 Identities=15% Similarity=0.148 Sum_probs=53.1
Q ss_pred ccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCcccc-CCCccccccceeeecccccccccccchhhhcccccc
Q 037562 22 MEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLV-PSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLR 100 (670)
Q Consensus 22 ~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~-~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~ 100 (670)
.+|++|.++++ .++.+.......+++|++|+++++..+..++ ..+..+++|++|+++++. ++.+ ++..+..+++|+
T Consensus 56 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~ 132 (285)
T 1ozn_A 56 RNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQEL-GPGLFRGLAALQ 132 (285)
T ss_dssp TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCC-CTTTTTTCTTCC
T ss_pred CCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEE-CHhHhhCCcCCC
Confidence 37888888776 4555544334567788888888776566653 345567777777777764 3332 123345677777
Q ss_pred eecccccc
Q 037562 101 YMEIESCD 108 (670)
Q Consensus 101 ~L~i~~c~ 108 (670)
+|+++++.
T Consensus 133 ~L~l~~n~ 140 (285)
T 1ozn_A 133 YLYLQDNA 140 (285)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 77776653
No 93
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.72 E-value=6.6e-08 Score=101.18 Aligned_cols=81 Identities=12% Similarity=0.147 Sum_probs=37.0
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCcccc-CCCccccccceeeecccccccccccchhhhcccccce
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLV-PSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY 101 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~-~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~ 101 (670)
+++.|+++++ +++.++......+++|+.|+++++. +..++ ..+..+++|++|+++++. ++.+ ++..+..+++|++
T Consensus 76 ~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 76 NTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNW-LTVI-PSGAFEYLSKLRE 151 (452)
T ss_dssp TCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSBC-CTTTSSSCTTCCE
T ss_pred CccEEECcCC-cCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCCc-CCcc-ChhhhcccCCCCE
Confidence 5566666554 3444433333445555555555542 33333 223345555555555542 3332 1122334555555
Q ss_pred eccccc
Q 037562 102 MEIESC 107 (670)
Q Consensus 102 L~i~~c 107 (670)
|+++++
T Consensus 152 L~L~~N 157 (452)
T 3zyi_A 152 LWLRNN 157 (452)
T ss_dssp EECCSC
T ss_pred EECCCC
Confidence 555444
No 94
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.72 E-value=6.8e-08 Score=97.27 Aligned_cols=79 Identities=11% Similarity=0.185 Sum_probs=43.9
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM 102 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L 102 (670)
+|++|++++| +++.++. ...+++|++|++++| .+..++ ....+++|++|++++|. +..+ +....+++|++|
T Consensus 67 ~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l~~n~-i~~~---~~~~~l~~L~~L 137 (347)
T 4fmz_A 67 NLEYLNLNGN-QITDISP--LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNEDN-ISDI---SPLANLTKMYSL 137 (347)
T ss_dssp TCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECTTSC-CCCC---GGGTTCTTCCEE
T ss_pred CccEEEccCC-ccccchh--hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEECcCCc-ccCc---hhhccCCceeEE
Confidence 6777777776 4555543 355667777777666 344432 24455666666666553 3332 224455566666
Q ss_pred cccccccc
Q 037562 103 EIESCDKI 110 (670)
Q Consensus 103 ~i~~c~~l 110 (670)
++++|..+
T Consensus 138 ~l~~n~~~ 145 (347)
T 4fmz_A 138 NLGANHNL 145 (347)
T ss_dssp ECTTCTTC
T ss_pred ECCCCCCc
Confidence 66555433
No 95
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.71 E-value=1.1e-07 Score=91.83 Aligned_cols=150 Identities=19% Similarity=0.195 Sum_probs=99.1
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhcccccce
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY 101 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~ 101 (670)
+|+.|.++++. ++.++ ....+++|++|++++|. +..+++. +..+++|++|++++|. ++.+ ++..+..+++|++
T Consensus 64 ~L~~L~l~~n~-l~~~~--~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~ 137 (272)
T 3rfs_A 64 NVRYLALGGNK-LHDIS--ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQ-LQSL-PDGVFDKLTNLTY 137 (272)
T ss_dssp TCCEEECTTSC-CCCCG--GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCC-CTTTTTTCTTCCE
T ss_pred CCcEEECCCCC-CCCch--hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCc-CCcc-CHHHhccCCCCCE
Confidence 77777777764 44443 23567788888888773 5555544 3567888888888873 4443 2233567888888
Q ss_pred eccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccC-CcCCCC
Q 037562 102 MEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGG-ELSTPN 180 (670)
Q Consensus 102 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~-~~~~~~ 180 (670)
|++++| .+..++. .....+++|+.|.+.++ +++.++.. ....+++|+.|++.+|. +..+|.. ...+++
T Consensus 138 L~L~~n-~l~~~~~-------~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~ 206 (272)
T 3rfs_A 138 LNLAHN-QLQSLPK-------GVFDKLTNLTELDLSYN-QLQSLPEG-VFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTS 206 (272)
T ss_dssp EECCSS-CCCCCCT-------TTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC-CSCCCTTTTTTCTT
T ss_pred EECCCC-ccCccCH-------HHhccCccCCEEECCCC-CcCccCHH-HhcCCccCCEEECCCCc-CCccCHHHHhCCcC
Confidence 888887 3444321 12235788999998887 45555442 23467899999999885 5656554 456889
Q ss_pred ccceeeeec
Q 037562 181 LHKVQLSRW 189 (670)
Q Consensus 181 L~~l~i~~~ 189 (670)
|+.|++++.
T Consensus 207 L~~L~l~~N 215 (272)
T 3rfs_A 207 LQYIWLHDN 215 (272)
T ss_dssp CCEEECCSS
T ss_pred CCEEEccCC
Confidence 999988654
No 96
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.70 E-value=7.8e-07 Score=78.83 Aligned_cols=187 Identities=16% Similarity=0.167 Sum_probs=149.5
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhH
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENT 317 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~ 317 (670)
+.+..+...+..+|+.++..|+.+|.++.+.. +.......-..+++.++.++.+.+ ..+...|++++..+..+.|-..
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~d-Ekval~A~r~L~~LLe~vpL~~ 110 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQEN-EKVTIKALRALGYLVKDVPMGS 110 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTT-HHHHHHHHHHHHHHHTTCCBCH
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcCCCCCH
Confidence 45788999999999999999999999998863 233344444558999999999888 8999999999999998665555
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562 318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRG 397 (670)
Q Consensus 318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 397 (670)
+.+.. ++.++..++.++++-++..|+..++.+--..+ .+ . ++..+..++ .+.+..++..+..++.+++..
T Consensus 111 ~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~-~~-~-----V~~~l~sLl-~Skd~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 111 KTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED-SK-L-----VRTYINELV-VSPDLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp HHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-CH-H-----HHHHHHHHH-TCSSHHHHHHHHHHHHHHGGG
T ss_pred HHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-hH-H-----HHHHHHHHH-hCCChhHHHHHHHHHHHhhcc
Confidence 55543 56889999999999999999999999932221 11 1 366777888 899999999999999999987
Q ss_pred CCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 037562 398 KPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDG 438 (670)
Q Consensus 398 ~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~ 438 (670)
.... .....++.-+-.++++.|+.++..|+.++..+...
T Consensus 181 S~D~--~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 181 SADS--GHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp CSSC--CCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred cCCH--HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 5322 22355666778899999999999999999998854
No 97
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.70 E-value=7.1e-08 Score=100.92 Aligned_cols=36 Identities=17% Similarity=0.066 Sum_probs=23.6
Q ss_pred cCCCCccEEeEecCCCccccccCC-cCCCCccceeeee
Q 037562 152 FTFPSLEILVVNYCPNMKIFSGGE-LSTPNLHKVQLSR 188 (670)
Q Consensus 152 ~~~~~L~~L~i~~C~~l~~~p~~~-~~~~~L~~l~i~~ 188 (670)
..+++|+.|++.++ ++..+|... ..+++|+.|++++
T Consensus 263 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 263 DGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp TTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCS
T ss_pred cCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccC
Confidence 34677777777776 566666543 3467777777754
No 98
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.67 E-value=5.4e-08 Score=96.01 Aligned_cols=160 Identities=14% Similarity=0.090 Sum_probs=76.3
Q ss_pred ccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccC--CCccccccceeeecccccccccccchhhhccccc
Q 037562 22 MEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVP--SSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRL 99 (670)
Q Consensus 22 ~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~--~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L 99 (670)
.+|++|+++++. ++.++.. ...+++|++|+++++. +..++. ....+++|++|++++|. +.... +..+..+++|
T Consensus 78 ~~L~~L~Ls~n~-i~~l~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L 152 (306)
T 2z66_A 78 TSLKYLDLSFNG-VITMSSN-FLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTH-TRVAF-NGIFNGLSSL 152 (306)
T ss_dssp SCCCEEECCSCS-EEEEEEE-EETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSC-CEECS-TTTTTTCTTC
T ss_pred cccCEEECCCCc-cccChhh-cCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCc-CCccc-hhhcccCcCC
Confidence 377777777663 4444432 2456666666666543 333322 23445556666665553 22111 1223445555
Q ss_pred ceeccccccccce-ecccc----------------ccccccccccccccccccccccccccccccCCcccCCCCccEEeE
Q 037562 100 RYMEIESCDKITE-IVLVD----------------DVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVV 162 (670)
Q Consensus 100 ~~L~i~~c~~l~~-~~~~~----------------~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i 162 (670)
++|+++++.--.. ++..- ....+.....+++|+.|.+.++. ++.+... ....+++|+.|++
T Consensus 153 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L 230 (306)
T 2z66_A 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTF-PYKCLNSLQVLDY 230 (306)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSG-GGTTCTTCCEEEC
T ss_pred CEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChh-hccCcccCCEeEC
Confidence 5555554431110 00000 00001122345666666666643 3333221 1334677778887
Q ss_pred ecCCCccccccCCcCC-CCccceeeee
Q 037562 163 NYCPNMKIFSGGELST-PNLHKVQLSR 188 (670)
Q Consensus 163 ~~C~~l~~~p~~~~~~-~~L~~l~i~~ 188 (670)
++++--...|.....+ ++|+.|++++
T Consensus 231 ~~N~l~~~~~~~~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 231 SLNHIMTSKKQELQHFPSSLAFLNLTQ 257 (306)
T ss_dssp TTSCCCBCSSSSCCCCCTTCCEEECTT
T ss_pred CCCCCcccCHHHHHhhhccCCEEEccC
Confidence 7775433344444445 3778777754
No 99
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.67 E-value=7.1e-06 Score=82.20 Aligned_cols=321 Identities=12% Similarity=0.114 Sum_probs=195.3
Q ss_pred CCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCc---hhHHHHHhcCC-hHHHHHHhcccCChhHHHHHHHHHHhhhcC
Q 037562 323 HGAVPIFVKLLAS-PSVDVRKQTVWALGNVAGDSP---RCRDLVLSQGA-LIPLLAELNENANLSMLRTATWTLFNFCRG 397 (670)
Q Consensus 323 ~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~---~~~~~i~~~~~-i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~ 397 (670)
..++..++.+|+. .+.++.+..+..+..+...++ .....+.+... ...+........+.-.+..++.++..++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 4567888888875 778888899989998887766 33333333222 222333332333334445666666666544
Q ss_pred CCCCChhhhhhhHH--HHHHhhcc-CChhHHHHHHHHHHHhccCChHHHHHHHHc--CCHHHHHHhcC----CC------
Q 037562 398 KPQPPFNQVRPALP--VLAQLIRS-NDEEVLTDACWALSYLSDGTNDKVQAVIEA--GVYPRLVELLG----HS------ 462 (670)
Q Consensus 398 ~~~~~~~~~~~~i~--~L~~lL~~-~~~~v~~~al~~L~~l~~~~~~~~~~~~~~--~~i~~L~~lL~----~~------ 462 (670)
.+. ........+. -+...|.. ++.+.+.-++.++..+..... ....+.+. +.++.++..+. +.
T Consensus 156 ~~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~-~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~ 233 (480)
T 1ho8_A 156 GLH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPE-YRDVIWLHEKKFMPTLFKILQRATDSQLATRIV 233 (480)
T ss_dssp TTC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH-HHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred CCc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchh-HHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence 322 3333344444 34455554 244556678888888876533 44445443 23455543322 11
Q ss_pred -------CccchhHHHHHHHHhhcCCchhhHHHHhCCCh--HHHHHhhccCCchhHHHHHHHHHHHhhcCCH----HHHH
Q 037562 463 -------SSSVLTPALRTIRNIVKGDDFQTQCIINCGAL--PYFLDMLVHNHEESIKKEVSWIISNITCGNR----EQIQ 529 (670)
Q Consensus 463 -------~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~--~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~----~~~~ 529 (670)
..+++..++.+++-++... .....+...++. +.|+.+++......+-+-+..++.|+....+ ....
T Consensus 234 ~~~~~~~~~Ql~Y~~ll~iWlLSF~~-~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~ 312 (480)
T 1ho8_A 234 ATNSNHLGIQLQYHSLLLIWLLTFNP-VFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIK 312 (480)
T ss_dssp -----CCHHHHHHHHHHHHHHHTTSH-HHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHH
T ss_pred cccCCCccHHHHHHHHHHHHHHHcCH-HHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHH
Confidence 1245788999999999844 455556555543 5677778776578899999999999987542 2223
Q ss_pred H-HHhcCChHHHHHHhhc---CChhHHHHHHHHHHHh-------c--------------CCCCHHH-HHHHHHcC-----
Q 037562 530 A-VIDSGLIGPIVNLLQN---TEFDTKKEAAWAISNA-------T--------------KFGTHEQ-IKHLVREG----- 578 (670)
Q Consensus 530 ~-l~~~~~i~~L~~ll~~---~~~~v~~~a~~aL~~l-------~--------------~~~~~~~-~~~l~~~~----- 578 (670)
. ++..++ +.++..|.. .|+++....-.....+ + .. +|.+ ...|+.++
T Consensus 313 ~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~W-SP~H~se~FW~ENa~kf~ 390 (480)
T 1ho8_A 313 QLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCW-SPPHVDNGFWSDNIDEFK 390 (480)
T ss_dssp HHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCC-CGGGGCHHHHHHHSGGGS
T ss_pred HHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCccc-CCCccchhHHHHHHHHHH
Confidence 2 333344 445555553 3555544333222222 1 11 1111 12333322
Q ss_pred -----CcHHHHhhccC----------CChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhc
Q 037562 579 -----CVKPLCDLLLC----------ADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQS 643 (670)
Q Consensus 579 -----~i~~L~~ll~~----------~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~ 643 (670)
++..|++++++ .|+.+...|+.=++.+++..+. .+..+++.|+-+.+-+|++
T Consensus 391 e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~-------------gr~i~~~lg~K~~VM~Lm~ 457 (480)
T 1ho8_A 391 KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE-------------SIDVLDKTGGKADIMELLN 457 (480)
T ss_dssp SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT-------------HHHHHHHHSHHHHHHHHTS
T ss_pred hcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcc-------------hhHHHHHcCcHHHHHHHhc
Confidence 36778888863 4677888888889998887664 3567889999999999999
Q ss_pred CCCHHHHHHHHHHHHHhc
Q 037562 644 HDDNGISEKAVEILETYW 661 (670)
Q Consensus 644 ~~~~~v~~~a~~~l~~~~ 661 (670)
|+|++|+..|...++++.
T Consensus 458 h~d~~Vr~~AL~avQklm 475 (480)
T 1ho8_A 458 HSDSRVKYEALKATQAII 475 (480)
T ss_dssp CSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999998764
No 100
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.67 E-value=1.9e-07 Score=91.01 Aligned_cols=130 Identities=18% Similarity=0.165 Sum_probs=73.7
Q ss_pred cCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceeccccccccccc
Q 037562 45 VMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDE 124 (670)
Q Consensus 45 ~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 124 (670)
.+++|+.|+++++ .+..++.....+++|+.|+++++ +++.+ ++..+..+++|++|+++++. ++.++. ..
T Consensus 75 ~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N-~l~~l-~~~~~~~l~~L~~L~L~~N~-l~~~~~-------~~ 143 (290)
T 1p9a_G 75 TLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFN-RLTSL-PLGALRGLGELQELYLKGNE-LKTLPP-------GL 143 (290)
T ss_dssp CCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSS-CCCCC-CSSTTTTCTTCCEEECTTSC-CCCCCT-------TT
T ss_pred CCCcCCEEECCCC-cCCcCchhhccCCCCCEEECCCC-cCccc-CHHHHcCCCCCCEEECCCCC-CCccCh-------hh
Confidence 4445555555444 23444444445555666665554 23332 12234456666666666552 332221 11
Q ss_pred cccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCccceeeee
Q 037562 125 VITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSR 188 (670)
Q Consensus 125 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~ 188 (670)
...+++|+.|.+.+. +++.++.+ ....+++|+.|++.++ +++.+|.+....++|+.|++++
T Consensus 144 ~~~l~~L~~L~L~~N-~l~~l~~~-~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 144 LTPTPKLEKLSLANN-NLTELPAG-LLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp TTTCTTCCEEECTTS-CCSCCCTT-TTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCS
T ss_pred cccccCCCEEECCCC-cCCccCHH-HhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCC
Confidence 234677777777765 45555543 2345788888888876 4678888877778888887754
No 101
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.66 E-value=2.8e-08 Score=88.26 Aligned_cols=79 Identities=19% Similarity=0.177 Sum_probs=43.5
Q ss_pred cccEEEeccCcCcc--cccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccc
Q 037562 23 EVKISEAYNCYRLE--NILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLR 100 (670)
Q Consensus 23 ~L~~L~i~~c~~l~--~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~ 100 (670)
+|+.|.+.+|. ++ .++.. ...+++|+.|++++|. +..+ ..+..+++|++|++++|. +... .+.....+++|+
T Consensus 25 ~L~~L~l~~n~-l~~~~i~~~-~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~ 98 (168)
T 2ell_A 25 AVRELVLDNCK-SNDGKIEGL-TAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENR-IFGG-LDMLAEKLPNLT 98 (168)
T ss_dssp SCSEEECCSCB-CBTTBCSSC-CGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCC-CCSC-CCHHHHHCTTCC
T ss_pred cCCEEECCCCC-CChhhHHHH-HHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCc-CchH-HHHHHhhCCCCC
Confidence 56666666664 43 33332 2455666666666664 4444 444556666666666663 2221 123334466666
Q ss_pred eeccccc
Q 037562 101 YMEIESC 107 (670)
Q Consensus 101 ~L~i~~c 107 (670)
+|++++|
T Consensus 99 ~L~Ls~N 105 (168)
T 2ell_A 99 HLNLSGN 105 (168)
T ss_dssp EEECBSS
T ss_pred EEeccCC
Confidence 6666665
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.66 E-value=1e-07 Score=93.08 Aligned_cols=143 Identities=18% Similarity=0.231 Sum_probs=109.7
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM 102 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L 102 (670)
+|+.|.+.+| +++.++. ...+++|+.|++++|. +..+++ ...+++|+.|+++++. ++.+ +.+..+++|++|
T Consensus 47 ~L~~L~l~~~-~i~~~~~--~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L 117 (291)
T 1h6t_A 47 SIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENK-VKDL---SSLKDLKKLKSL 117 (291)
T ss_dssp TCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCG---GGGTTCTTCCEE
T ss_pred cccEEEccCC-CcccChh--HhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCc-CCCC---hhhccCCCCCEE
Confidence 8999999988 4666643 4678999999999984 666665 6788999999999984 5554 457889999999
Q ss_pred ccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCcc
Q 037562 103 EIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLH 182 (670)
Q Consensus 103 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~ 182 (670)
++++|. +..+. ....+++|+.|.++++ +++.+. ....+++|+.|++++| ++..++. ...+++|+
T Consensus 118 ~L~~n~-i~~~~---------~l~~l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~ 181 (291)
T 1h6t_A 118 SLEHNG-ISDIN---------GLVHLPQLESLYLGNN-KITDIT---VLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQ 181 (291)
T ss_dssp ECTTSC-CCCCG---------GGGGCTTCCEEECCSS-CCCCCG---GGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCC
T ss_pred ECCCCc-CCCCh---------hhcCCCCCCEEEccCC-cCCcch---hhccCCCCCEEEccCC-ccccchh-hcCCCccC
Confidence 999884 44331 2346899999999987 345442 3557899999999998 4666665 66789999
Q ss_pred ceeeeecc
Q 037562 183 KVQLSRWD 190 (670)
Q Consensus 183 ~l~i~~~~ 190 (670)
.|++++..
T Consensus 182 ~L~L~~N~ 189 (291)
T 1h6t_A 182 NLYLSKNH 189 (291)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 99997653
No 103
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.64 E-value=1.2e-07 Score=97.00 Aligned_cols=62 Identities=18% Similarity=0.166 Sum_probs=36.0
Q ss_pred cccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCccceeeeec
Q 037562 125 VITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRW 189 (670)
Q Consensus 125 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~~ 189 (670)
...+|+|+.|.++++. ++.+... ....+++|+.|++.+| +++.+|.....+|+|+.|++++.
T Consensus 244 l~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNE-LEKIMYH-PFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN 305 (390)
T ss_dssp GGGCTTCSEEECCSSC-CCEEESG-GGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS
T ss_pred HcCCCCccEEECCCCc-CCCcChh-HccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC
Confidence 3456777777777653 3333221 2344667777777765 45556665555667777766544
No 104
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.64 E-value=3.5e-08 Score=99.57 Aligned_cols=156 Identities=17% Similarity=0.079 Sum_probs=111.5
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccC-CCccccccceeeecccccccccccchhhhcccccce
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVP-SSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY 101 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~-~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~ 101 (670)
+|++|+++++. ++.++......+++|+.|+++++ .+..+++ .+..+++|++|+++++ +++.+ +...+..+++|++
T Consensus 53 ~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~ 128 (353)
T 2z80_A 53 AVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYN-YLSNL-SSSWFKPLSSLTF 128 (353)
T ss_dssp TCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSSC-CHHHHTTCTTCSE
T ss_pred cCcEEECCCCc-CcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCC-cCCcC-CHhHhCCCccCCE
Confidence 89999998874 77777654578899999999888 4666654 4677899999999987 45554 2233678999999
Q ss_pred eccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCc
Q 037562 102 MEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNL 181 (670)
Q Consensus 102 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L 181 (670)
|+++++. ++.++. ......+++|+.|.+.++..++.+... ....+++|+.|++.+|.--...|.....+++|
T Consensus 129 L~L~~n~-l~~l~~------~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 200 (353)
T 2z80_A 129 LNLLGNP-YKTLGE------TSLFSHLTKLQILRVGNMDTFTKIQRK-DFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200 (353)
T ss_dssp EECTTCC-CSSSCS------SCSCTTCTTCCEEEEEESSSCCEECTT-TTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred EECCCCC-CcccCc------hhhhccCCCCcEEECCCCccccccCHH-HccCCCCCCEEECCCCCcCccCHHHHhccccC
Confidence 9998874 433321 012345888999999988777776543 24567889999998886433346666677888
Q ss_pred cceeeeecc
Q 037562 182 HKVQLSRWD 190 (670)
Q Consensus 182 ~~l~i~~~~ 190 (670)
++|++++..
T Consensus 201 ~~L~l~~n~ 209 (353)
T 2z80_A 201 SHLILHMKQ 209 (353)
T ss_dssp EEEEEECSC
T ss_pred CeecCCCCc
Confidence 888876543
No 105
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.63 E-value=2.4e-07 Score=88.26 Aligned_cols=153 Identities=14% Similarity=0.119 Sum_probs=108.7
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhcccccce
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY 101 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~ 101 (670)
+++.|.+.++. +..++......+++|++|+++++. +..+++. +..+++|+.|+++++. ++.+ ++..+..+++|++
T Consensus 36 ~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~ 111 (251)
T 3m19_A 36 DTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQ-LASL-PLGVFDHLTQLDK 111 (251)
T ss_dssp TCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCC-CTTTTTTCTTCCE
T ss_pred CCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCc-cccc-ChhHhcccCCCCE
Confidence 78889888774 555554445678899999998874 5555543 4678899999999874 4443 2344578899999
Q ss_pred eccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCcccccc-CCcCCCC
Q 037562 102 MEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSG-GELSTPN 180 (670)
Q Consensus 102 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~-~~~~~~~ 180 (670)
|+++++ .++.++. .....+++|+.|.+.++ +++.++.+ ....+++|+.|++.++ ++..+|. ....+++
T Consensus 112 L~L~~N-~l~~~~~-------~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~ 180 (251)
T 3m19_A 112 LYLGGN-QLKSLPS-------GVFDRLTKLKELRLNTN-QLQSIPAG-AFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGK 180 (251)
T ss_dssp EECCSS-CCCCCCT-------TTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTT
T ss_pred EEcCCC-cCCCcCh-------hHhccCCcccEEECcCC-cCCccCHH-HcCcCcCCCEEECCCC-cCCccCHHHHhCCCC
Confidence 999887 3544431 12235789999999887 66666553 2456799999999987 4666665 3456789
Q ss_pred ccceeeeecc
Q 037562 181 LHKVQLSRWD 190 (670)
Q Consensus 181 L~~l~i~~~~ 190 (670)
|+.|++++.+
T Consensus 181 L~~L~l~~N~ 190 (251)
T 3m19_A 181 LQTITLFGNQ 190 (251)
T ss_dssp CCEEECCSCC
T ss_pred CCEEEeeCCc
Confidence 9999886543
No 106
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.63 E-value=1.1e-07 Score=94.36 Aligned_cols=129 Identities=12% Similarity=0.072 Sum_probs=81.0
Q ss_pred CCCCcEEEEecCCCCccccC-CCccccccceeeecccccccccccchhhhcccccceeccccccccceeccccccccccc
Q 037562 46 MNNLVILCVHCCDHLINLVP-SSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDE 124 (670)
Q Consensus 46 ~~~L~~L~i~~c~~l~~~~~-~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 124 (670)
+++|+.|+++++. +..+++ ....+++|+.|+++++ .+..+.+......+++|++|+++++. ++.+. .
T Consensus 119 ~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---------~ 186 (317)
T 3o53_A 119 GQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVK---------G 186 (317)
T ss_dssp CSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEE---------C
T ss_pred cCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCc-Ccccc---------c
Confidence 5566666666653 333322 3445677777777776 34443222223456777777777764 33331 1
Q ss_pred cccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCccceeeeecc
Q 037562 125 VITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRWD 190 (670)
Q Consensus 125 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~~~ 190 (670)
...+++|+.|.++++ +++.++.. ...+++|+.|+++++ +++.+|.....+++|+.|++++.+
T Consensus 187 ~~~l~~L~~L~Ls~N-~l~~l~~~--~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 187 QVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp CCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred ccccccCCEEECCCC-cCCcchhh--hcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCC
Confidence 123788888888876 45555442 456788999999887 577788877778888888886544
No 107
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.63 E-value=1.9e-07 Score=93.19 Aligned_cols=160 Identities=18% Similarity=0.159 Sum_probs=81.9
Q ss_pred CccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccc------------
Q 037562 21 GMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVL------------ 88 (670)
Q Consensus 21 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~------------ 88 (670)
..+|++|.++++ +++.+.......+++|++|+++++. +..++... +++|++|+++++. ++.+.
T Consensus 75 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~--~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~ 149 (330)
T 1xku_A 75 LKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQ-LKELPEKM--PKTLQELRVHENE-ITKVRKSVFNGLNQMIV 149 (330)
T ss_dssp CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSC--CTTCCEEECCSSC-CCBBCHHHHTTCTTCCE
T ss_pred CCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCCc-CCccChhh--cccccEEECCCCc-ccccCHhHhcCCccccE
Confidence 348888888877 3555543334667888888887764 55555432 2556666665542 22211
Q ss_pred -------------cchhhhcccccceeccccccccceecc-----------ccc---ccccccccccccccccccccccc
Q 037562 89 -------------TSSIAKTLVRLRYMEIESCDKITEIVL-----------VDD---VVAQDEVITFRELKELNLLQMQN 141 (670)
Q Consensus 89 -------------~~~~~~~l~~L~~L~i~~c~~l~~~~~-----------~~~---~~~~~~~~~~~~L~~L~l~~~~~ 141 (670)
.+..+..+++|++|++.++. ++.++. ... .........+++|+.|.+.++.
T Consensus 150 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~- 227 (330)
T 1xku_A 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS- 227 (330)
T ss_dssp EECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-
T ss_pred EECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-
Confidence 11223344455555544432 111110 000 0001112234455555555432
Q ss_pred ccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCccceeeeec
Q 037562 142 LISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRW 189 (670)
Q Consensus 142 l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~~ 189 (670)
++.+... ....+++|+.|++++| ++..+|.+...+++|+.|++++.
T Consensus 228 l~~~~~~-~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 228 ISAVDNG-SLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp CCEECTT-TGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS
T ss_pred CceeChh-hccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC
Confidence 2222221 2335677777777777 46677777767777887777643
No 108
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.63 E-value=2.5e-07 Score=87.59 Aligned_cols=184 Identities=15% Similarity=0.209 Sum_probs=141.8
Q ss_pred HHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhc-cCChhHHHHHHHHHHHhccCChHHHHHHHH
Q 037562 370 PLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIR-SNDEEVLTDACWALSYLSDGTNDKVQAVIE 448 (670)
Q Consensus 370 ~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~ 448 (670)
.+...+ .+.+...|+.|+..|..+....+.........+++.+...+. +.+..++..++.+++.++..-.........
T Consensus 19 ~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~ 97 (242)
T 2qk2_A 19 DFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYAS 97 (242)
T ss_dssp THHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 466677 788899999999999999876322111223577888999995 889999999999999998543322222222
Q ss_pred cCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcC-CHHH
Q 037562 449 AGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCG-NREQ 527 (670)
Q Consensus 449 ~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~-~~~~ 527 (670)
.+++.++..+.+.+..+|..|..++..++.... .. .+++.+...+++. ++.+|..++..++.+... .+..
T Consensus 98 -~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 98 -ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp -HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGG
T ss_pred -HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCC
Confidence 588999999999999999999999999987432 11 2577888999988 999999999999997553 3331
Q ss_pred --HHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCC
Q 037562 528 --IQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKF 565 (670)
Q Consensus 528 --~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 565 (670)
...+ ..++|.++.++.+.++++|..|..+++.++..
T Consensus 169 ~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 169 LNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp CCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 2222 24889999999999999999999999999864
No 109
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.62 E-value=1.9e-07 Score=101.83 Aligned_cols=82 Identities=16% Similarity=0.164 Sum_probs=45.0
Q ss_pred ccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccc-cCCCccccccceeeecccccccccccchhhhcccccc
Q 037562 22 MEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINL-VPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLR 100 (670)
Q Consensus 22 ~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~-~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~ 100 (670)
.+|++|+++++ +++.+|.. ...+++|++|++++|. +..+ +.....+++|++|++++|.....+ +...+..+++|+
T Consensus 278 ~~L~~L~l~~n-~l~~lp~~-l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~l~~L~ 353 (606)
T 3t6q_A 278 SGLQELDLTAT-HLSELPSG-LVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKRLEL-GTGCLENLENLR 353 (606)
T ss_dssp TTCSEEECTTS-CCSCCCSS-CCSCTTCCEEECTTCC-CSBGGGGCGGGCTTCSEEECCSCSSCCBC-CSSTTTTCTTCC
T ss_pred cCCCEEeccCC-ccCCCChh-hcccccCCEEECccCC-cCcCchhhhhccCcCCEEECCCCCccccc-chhhhhccCcCC
Confidence 37777777776 45555543 3556677777777664 3333 334455666666666666432222 112244555555
Q ss_pred eeccccc
Q 037562 101 YMEIESC 107 (670)
Q Consensus 101 ~L~i~~c 107 (670)
+|+++++
T Consensus 354 ~L~l~~n 360 (606)
T 3t6q_A 354 ELDLSHD 360 (606)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 5555544
No 110
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.61 E-value=2.5e-07 Score=89.23 Aligned_cols=152 Identities=18% Similarity=0.182 Sum_probs=102.1
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCC-ccccccceeeecccccccccccchhhhcccccce
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSS-TSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY 101 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~-~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~ 101 (670)
+|+.|.++++. ++.++......+++|++|+++++. +..++... ..+++|++|+++++. ++.+ ++..+..+++|++
T Consensus 38 ~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~ 113 (270)
T 2o6q_A 38 DTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNK-LQAL-PIGVFDQLVNLAE 113 (270)
T ss_dssp TCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSC-CCCC-CTTTTTTCSSCCE
T ss_pred CCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCc-CCcC-CHhHcccccCCCE
Confidence 68888887763 666665444677888888888764 55665543 567888888888773 4443 2234567888888
Q ss_pred eccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccC-CcCCCC
Q 037562 102 MEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGG-ELSTPN 180 (670)
Q Consensus 102 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~-~~~~~~ 180 (670)
|+++++. ++.+. ......+++|++|.+.++ .++.++.+ ....+++|+.|++.++ ++..+|.. +..+++
T Consensus 114 L~l~~n~-l~~~~-------~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~ 182 (270)
T 2o6q_A 114 LRLDRNQ-LKSLP-------PRVFDSLTKLTYLSLGYN-ELQSLPKG-VFDKLTSLKELRLYNN-QLKRVPEGAFDKLTE 182 (270)
T ss_dssp EECCSSC-CCCCC-------TTTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTT
T ss_pred EECCCCc-cCeeC-------HHHhCcCcCCCEEECCCC-cCCccCHh-HccCCcccceeEecCC-cCcEeChhHhccCCC
Confidence 8888764 33322 112245788999988876 46555543 2346789999999887 46666654 445789
Q ss_pred ccceeeeec
Q 037562 181 LHKVQLSRW 189 (670)
Q Consensus 181 L~~l~i~~~ 189 (670)
|+.|++++.
T Consensus 183 L~~L~L~~N 191 (270)
T 2o6q_A 183 LKTLKLDNN 191 (270)
T ss_dssp CCEEECCSS
T ss_pred cCEEECCCC
Confidence 999988654
No 111
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.60 E-value=1.6e-07 Score=94.62 Aligned_cols=141 Identities=13% Similarity=0.102 Sum_probs=80.9
Q ss_pred CcccccccccccCCCCcEEEEecCCCCccccC-CCccccccceeeecccccccccccchhhhcccccceeccccccccce
Q 037562 34 RLENILIEESSVMNNLVILCVHCCDHLINLVP-SSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITE 112 (670)
Q Consensus 34 ~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~-~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~ 112 (670)
+++.+|.. ..++|++|+++++. +..+++ .+..+++|++|+++++ +++.+. +..+..+++|++|+++++. ++.
T Consensus 42 ~l~~iP~~---~~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~ 114 (353)
T 2z80_A 42 SLNSIPSG---LTEAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSN-GINTIE-EDSFSSLGSLEHLDLSYNY-LSN 114 (353)
T ss_dssp TCSSCCTT---CCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS-CCCEEC-TTTTTTCTTCCEEECCSSC-CSS
T ss_pred Cccccccc---ccccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCC-ccCccC-HhhcCCCCCCCEEECCCCc-CCc
Confidence 45555542 34577777777664 555554 4556777777777776 444432 2335567777777777663 333
Q ss_pred eccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccc-cCCcCCCCccceeeeec
Q 037562 113 IVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFS-GGELSTPNLHKVQLSRW 189 (670)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p-~~~~~~~~L~~l~i~~~ 189 (670)
++. .....+++|++|.+.++ .++.++.......+++|+.|++.+|..+..++ .....+++|++|++++.
T Consensus 115 ~~~-------~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 115 LSS-------SWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp CCH-------HHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred CCH-------hHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 221 11234667777777665 34444432234456777777777776666554 33445677777777654
No 112
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.59 E-value=2.8e-07 Score=89.82 Aligned_cols=150 Identities=21% Similarity=0.220 Sum_probs=108.5
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM 102 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L 102 (670)
+++.|.++++. ++.++......+++|+.|+++++. +..++.. ..+++|+.|+++++ .++.+ +.....+++|++|
T Consensus 32 ~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L~Ls~N-~l~~l--~~~~~~l~~L~~L 105 (290)
T 1p9a_G 32 DTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTLDLSHN-QLQSL--PLLGQTLPALTVL 105 (290)
T ss_dssp TCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCEEECCSS-CCSSC--CCCTTTCTTCCEE
T ss_pred CCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCEEECCCC-cCCcC--chhhccCCCCCEE
Confidence 78888888774 666654445678899999998874 6666654 67889999999887 45554 2345678999999
Q ss_pred ccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCC-cCCCCc
Q 037562 103 EIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGE-LSTPNL 181 (670)
Q Consensus 103 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~-~~~~~L 181 (670)
+++++. ++.++ ......+++|+.|.+.++ +++.++.+ ....+++|+.|++.++ +++.+|.+. ..+++|
T Consensus 106 ~l~~N~-l~~l~-------~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L 174 (290)
T 1p9a_G 106 DVSFNR-LTSLP-------LGALRGLGELQELYLKGN-ELKTLPPG-LLTPTPKLEKLSLANN-NLTELPAGLLNGLENL 174 (290)
T ss_dssp ECCSSC-CCCCC-------SSTTTTCTTCCEEECTTS-CCCCCCTT-TTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTC
T ss_pred ECCCCc-CcccC-------HHHHcCCCCCCEEECCCC-CCCccChh-hcccccCCCEEECCCC-cCCccCHHHhcCcCCC
Confidence 998874 44332 122345789999999886 56666553 2346799999999987 578888765 458899
Q ss_pred cceeeeec
Q 037562 182 HKVQLSRW 189 (670)
Q Consensus 182 ~~l~i~~~ 189 (670)
+.|++++.
T Consensus 175 ~~L~L~~N 182 (290)
T 1p9a_G 175 DTLLLQEN 182 (290)
T ss_dssp CEEECCSS
T ss_pred CEEECCCC
Confidence 99988654
No 113
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.59 E-value=2.6e-07 Score=94.65 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=24.2
Q ss_pred cCCCCccEEeEecCCCccccccCCcCCCCccceeeeec
Q 037562 152 FTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRW 189 (670)
Q Consensus 152 ~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~~ 189 (670)
..+|+|+.|++.++.--...|.....+++|+.|++++.
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 282 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS
T ss_pred cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC
Confidence 35677777777777432333555556778888877654
No 114
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.59 E-value=2.1e-07 Score=100.97 Aligned_cols=81 Identities=14% Similarity=0.079 Sum_probs=38.5
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCC-ccccccceeeecccccccccccchhhhcccccce
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSS-TSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY 101 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~-~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~ 101 (670)
+|++|.++++. ++.++......+++|+.|++++| .+..+|+.. ..+++|++|++++| .+..+ ++..+..+++|++
T Consensus 100 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~ 175 (597)
T 3oja_B 100 TIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNN-NLERI-EDDTFQATTSLQN 175 (597)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBC-CTTTTTTCTTCCE
T ss_pred CCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCC-cCCCC-ChhhhhcCCcCcE
Confidence 45555555442 44443332344555555555555 244444432 44555666666555 22332 1223445556666
Q ss_pred eccccc
Q 037562 102 MEIESC 107 (670)
Q Consensus 102 L~i~~c 107 (670)
|+++++
T Consensus 176 L~L~~N 181 (597)
T 3oja_B 176 LQLSSN 181 (597)
T ss_dssp EECTTS
T ss_pred EECcCC
Confidence 655554
No 115
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.59 E-value=2.2e-07 Score=98.02 Aligned_cols=161 Identities=17% Similarity=0.170 Sum_probs=79.7
Q ss_pred ccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhcccccc
Q 037562 22 MEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLR 100 (670)
Q Consensus 22 ~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~ 100 (670)
.+|++|.+.++ .++.+.......+++|+.|+++++. +..++.. +..+++|++|+++++. +..+. +..+..+++|+
T Consensus 56 ~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~-~~~~~~l~~L~ 131 (477)
T 2id5_A 56 PHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENK-IVILL-DYMFQDLYNLK 131 (477)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSC-CCEEC-TTTTTTCTTCC
T ss_pred CCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCc-cccCC-hhHccccccCC
Confidence 37888888776 4555543334567777777777764 5555543 3456777777777663 22221 22344566666
Q ss_pred eeccccccccceecc--------------ccc---cccccccccccccccccccccccccccccCCcccCCCCccEEeEe
Q 037562 101 YMEIESCDKITEIVL--------------VDD---VVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVN 163 (670)
Q Consensus 101 ~L~i~~c~~l~~~~~--------------~~~---~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~ 163 (670)
+|++.++. +..+.. ... .........+++|+.|.+.++. ++.+... ....+++|+.|++.
T Consensus 132 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~-~~~~l~~L~~L~l~ 208 (477)
T 2id5_A 132 SLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN-INAIRDY-SFKRLYRLKVLEIS 208 (477)
T ss_dssp EEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC-CCEECTT-CSCSCTTCCEEEEE
T ss_pred EEECCCCc-cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc-CcEeChh-hcccCcccceeeCC
Confidence 66665542 111110 000 0000011223444444444332 1222111 23345666666666
Q ss_pred cCCCccccccCCcCCCCccceeeeec
Q 037562 164 YCPNMKIFSGGELSTPNLHKVQLSRW 189 (670)
Q Consensus 164 ~C~~l~~~p~~~~~~~~L~~l~i~~~ 189 (670)
+|+.+..+|......++|++|++++.
T Consensus 209 ~~~~~~~~~~~~~~~~~L~~L~l~~n 234 (477)
T 2id5_A 209 HWPYLDTMTPNCLYGLNLTSLSITHC 234 (477)
T ss_dssp CCTTCCEECTTTTTTCCCSEEEEESS
T ss_pred CCccccccCcccccCccccEEECcCC
Confidence 66666666655544455666655443
No 116
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.58 E-value=1.9e-07 Score=101.28 Aligned_cols=59 Identities=14% Similarity=0.006 Sum_probs=43.9
Q ss_pred CccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccC-CCccccccceeeeccc
Q 037562 21 GMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVP-SSTSFQNLTNLVVSHC 81 (670)
Q Consensus 21 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~-~~~~~~~L~~L~i~~c 81 (670)
..+|++|.++++ .++.++......+++|+.|++++|. +..+++ .+..+++|+.|+++++
T Consensus 122 l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 122 VPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTS
T ss_pred CCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCC
Confidence 348999999888 5777776544678899999998885 555544 4567788888888877
No 117
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.57 E-value=1.3e-07 Score=93.49 Aligned_cols=81 Identities=14% Similarity=0.169 Sum_probs=39.9
Q ss_pred cccEEEeccCcCcc---cccccccccCCCCcEEEEecCCCCc-cccCCCccccccceeeecccccccccccchhhhcccc
Q 037562 23 EVKISEAYNCYRLE---NILIEESSVMNNLVILCVHCCDHLI-NLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVR 98 (670)
Q Consensus 23 ~L~~L~i~~c~~l~---~~~~~~~~~~~~L~~L~i~~c~~l~-~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~ 98 (670)
+++.|++.++. +. .++. ....+++|++|+++++.++. .+|..+..+++|++|+++++.--..+ +..+..+++
T Consensus 51 ~l~~L~L~~~~-l~~~~~~~~-~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~--p~~~~~l~~ 126 (313)
T 1ogq_A 51 RVNNLDLSGLN-LPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI--PDFLSQIKT 126 (313)
T ss_dssp CEEEEEEECCC-CSSCEECCG-GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC--CGGGGGCTT
T ss_pred eEEEEECCCCC-ccCCcccCh-hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcC--CHHHhCCCC
Confidence 56666666553 32 2332 23456666666666544443 33444455566666666655321111 123445555
Q ss_pred cceeccccc
Q 037562 99 LRYMEIESC 107 (670)
Q Consensus 99 L~~L~i~~c 107 (670)
|++|+++++
T Consensus 127 L~~L~Ls~N 135 (313)
T 1ogq_A 127 LVTLDFSYN 135 (313)
T ss_dssp CCEEECCSS
T ss_pred CCEEeCCCC
Confidence 555555544
No 118
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.57 E-value=1.1e-07 Score=102.21 Aligned_cols=143 Identities=18% Similarity=0.229 Sum_probs=108.9
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM 102 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L 102 (670)
+|+.|.+.+|. +..++. ...+++|+.|++++|. +..+++ +..+++|+.|++++| .+..+ +.+..+++|+.|
T Consensus 44 ~L~~L~l~~n~-i~~l~~--l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L 114 (605)
T 1m9s_A 44 SIDQIIANNSD-IKSVQG--IQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDEN-KIKDL---SSLKDLKKLKSL 114 (605)
T ss_dssp TCCCCBCTTCC-CCCCTT--GGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSS-CCCCC---TTSTTCTTCCEE
T ss_pred CCCEEECcCCC-CCCChH--HccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCC-CCCCC---hhhccCCCCCEE
Confidence 78888888774 666553 4679999999999985 666665 678999999999998 45554 567789999999
Q ss_pred ccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCcc
Q 037562 103 EIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLH 182 (670)
Q Consensus 103 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~ 182 (670)
++++|. +..+. ....+|+|+.|.|+++ .++.+. ....+++|+.|++++|. +..++. +..+++|+
T Consensus 115 ~Ls~N~-l~~l~---------~l~~l~~L~~L~Ls~N-~l~~l~---~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~ 178 (605)
T 1m9s_A 115 SLEHNG-ISDIN---------GLVHLPQLESLYLGNN-KITDIT---VLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQ 178 (605)
T ss_dssp ECTTSC-CCCCG---------GGGGCTTCSEEECCSS-CCCCCG---GGGSCTTCSEEECCSSC-CCCCGG-GTTCTTCC
T ss_pred EecCCC-CCCCc---------cccCCCccCEEECCCC-ccCCch---hhcccCCCCEEECcCCc-CCCchh-hccCCCCC
Confidence 999885 33331 2456899999999987 355542 35678999999999985 555554 66789999
Q ss_pred ceeeeecc
Q 037562 183 KVQLSRWD 190 (670)
Q Consensus 183 ~l~i~~~~ 190 (670)
.|++++..
T Consensus 179 ~L~Ls~N~ 186 (605)
T 1m9s_A 179 NLYLSKNH 186 (605)
T ss_dssp EEECCSSC
T ss_pred EEECcCCC
Confidence 99997654
No 119
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.56 E-value=1.2e-07 Score=103.56 Aligned_cols=162 Identities=16% Similarity=0.047 Sum_probs=82.4
Q ss_pred cccEEEeccCcCccccc--ccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccc
Q 037562 23 EVKISEAYNCYRLENIL--IEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLR 100 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~--~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~ 100 (670)
+|+.|+++++. ++.+. ......+++|+.|++++|. +..++..+..+++|+.|++++|.- ....+...+..+++|+
T Consensus 351 ~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~ 427 (606)
T 3vq2_A 351 SLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTL-KRVTEFSAFLSLEKLL 427 (606)
T ss_dssp TCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEE-ESTTTTTTTTTCTTCC
T ss_pred CCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCcc-CCccChhhhhccccCC
Confidence 67777777663 33321 1112456677777776664 445555555566666666666532 2221112344555666
Q ss_pred eeccccccccceeccc-------------c---cc-ccccccccccccccccccccccccccccCCcccCCCCccEEeEe
Q 037562 101 YMEIESCDKITEIVLV-------------D---DV-VAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVN 163 (670)
Q Consensus 101 ~L~i~~c~~l~~~~~~-------------~---~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~ 163 (670)
+|++++|.-....+.. . .+ ..+.....+++|+.|.++++ +++.+... ....+++|+.|+++
T Consensus 428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWG-VFDTLHRLQLLNMS 505 (606)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECC
T ss_pred EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChh-hhcccccCCEEECC
Confidence 6655555421111000 0 00 00112234566777777666 33333321 23456777777777
Q ss_pred cCCCccccccCCcCCCCccceeeeec
Q 037562 164 YCPNMKIFSGGELSTPNLHKVQLSRW 189 (670)
Q Consensus 164 ~C~~l~~~p~~~~~~~~L~~l~i~~~ 189 (670)
+|.--...|.....+++|+.|++++.
T Consensus 506 ~N~l~~~~~~~~~~l~~L~~L~l~~N 531 (606)
T 3vq2_A 506 HNNLLFLDSSHYNQLYSLSTLDCSFN 531 (606)
T ss_dssp SSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred CCcCCCcCHHHccCCCcCCEEECCCC
Confidence 77433333666666777777777544
No 120
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.56 E-value=3.6e-07 Score=95.97 Aligned_cols=145 Identities=15% Similarity=0.172 Sum_probs=74.6
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeeccccccccccc-------------
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLT------------- 89 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~------------- 89 (670)
+|+.|.+++|. ++.++. ...+++|+.|++++|. +..+++ ...+++|+.|++++|. +..+.+
T Consensus 222 ~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~ 295 (466)
T 1o6v_A 222 NLDELSLNGNQ-LKDIGT--LASLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKLGANQ-ISNISPLAGLTALTNLELN 295 (466)
T ss_dssp TCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECC
T ss_pred CCCEEECCCCC-cccchh--hhcCCCCCEEECCCCc-cccchh-hhcCCCCCEEECCCCc-cCccccccCCCccCeEEcC
Confidence 67777777663 444322 2455666666666553 223322 3344555555555442 222200
Q ss_pred ------chhhhcccccceeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEe
Q 037562 90 ------SSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVN 163 (670)
Q Consensus 90 ------~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~ 163 (670)
.+.+..+++|++|++++|. +..+. ....+++|+.|.+.++ .++.+. ....+++|+.|++.
T Consensus 296 ~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~~---------~~~~l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~ 361 (466)
T 1o6v_A 296 ENQLEDISPISNLKNLTYLTLYFNN-ISDIS---------PVSSLTKLQRLFFYNN-KVSDVS---SLANLTNINWLSAG 361 (466)
T ss_dssp SSCCSCCGGGGGCTTCSEEECCSSC-CSCCG---------GGGGCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECC
T ss_pred CCcccCchhhcCCCCCCEEECcCCc-CCCch---------hhccCccCCEeECCCC-ccCCch---hhccCCCCCEEeCC
Confidence 0123344555555554442 22111 1235677777777766 444442 24467788888888
Q ss_pred cCCCccccccCCcCCCCccceeeeec
Q 037562 164 YCPNMKIFSGGELSTPNLHKVQLSRW 189 (670)
Q Consensus 164 ~C~~l~~~p~~~~~~~~L~~l~i~~~ 189 (670)
+|+--...| ...+++|+.|++++.
T Consensus 362 ~n~l~~~~~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 362 HNQISDLTP--LANLTRITQLGLNDQ 385 (466)
T ss_dssp SSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred CCccCccch--hhcCCCCCEEeccCC
Confidence 775433333 455777888877654
No 121
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.55 E-value=1.7e-07 Score=88.81 Aligned_cols=185 Identities=14% Similarity=0.166 Sum_probs=139.9
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH-HHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhh
Q 037562 327 PIFVKLLASPSVDVRKQTVWALGNVAGDSPRCR-DLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQ 405 (670)
Q Consensus 327 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 405 (670)
+.+.+.+.+.+...|..|+..|..++...+... ... ...++.+...+.++.+..++..|+.++..++..-...-...
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 457788889999999999999999985422210 000 12356666777447888999999999999996532222334
Q ss_pred hhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCC-chh
Q 037562 406 VRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGD-DFQ 484 (670)
Q Consensus 406 ~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~ 484 (670)
...++|.++..+.+.+..++..+..++..+..... .. .+++.+...+++.++.+|..++..|+.+.... +..
T Consensus 96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~-----~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~ 168 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LE-----AQQESIVESLSNKNPSVKSETALFIARALTRTQPTA 168 (242)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC
Confidence 46788999999999999999999999999986543 11 36678889999999999999999999976543 221
Q ss_pred -hHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc
Q 037562 485 -TQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC 522 (670)
Q Consensus 485 -~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 522 (670)
....+. .+++.+..++.+. ++++|..|..+++.++.
T Consensus 169 ~~~~~l~-~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 169 LNKKLLK-LLTTSLVKTLNEP-DPTVRDSSAEALGTLIK 205 (242)
T ss_dssp CCHHHHH-HHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred ccHHHHH-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence 222222 5789999999988 99999999999999875
No 122
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.54 E-value=4e-07 Score=95.61 Aligned_cols=77 Identities=19% Similarity=0.248 Sum_probs=50.6
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM 102 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L 102 (670)
+|++|++++|. ++.++. ...+++|++|++++|. +..+++ ...+++|++|++++| +++.+ +.+..+++|++|
T Consensus 69 ~L~~L~Ls~n~-l~~~~~--~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n-~l~~~---~~~~~l~~L~~L 139 (466)
T 1o6v_A 69 NLTQINFSNNQ-LTDITP--LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGLTLFNN-QITDI---DPLKNLTNLNRL 139 (466)
T ss_dssp TCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCC---GGGTTCTTCSEE
T ss_pred CCCEEECCCCc-cCCchh--hhccccCCEEECCCCc-cccChh-hcCCCCCCEEECCCC-CCCCC---hHHcCCCCCCEE
Confidence 77777777763 555543 3567777777777764 444444 566777888888777 44444 335677788888
Q ss_pred cccccc
Q 037562 103 EIESCD 108 (670)
Q Consensus 103 ~i~~c~ 108 (670)
++++|.
T Consensus 140 ~l~~n~ 145 (466)
T 1o6v_A 140 ELSSNT 145 (466)
T ss_dssp EEEEEE
T ss_pred ECCCCc
Confidence 777664
No 123
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=98.53 E-value=9.9e-06 Score=81.16 Aligned_cols=323 Identities=12% Similarity=0.097 Sum_probs=196.9
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh---hhHHHHHhCCChH-HHHH-hhCCCCHHHHHHHHHHHHHhhCCC
Q 037562 281 GVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTS---ENTKVVIDHGAVP-IFVK-LLASPSVDVRKQTVWALGNVAGDS 355 (670)
Q Consensus 281 g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~---~~~~~i~~~~~i~-~L~~-lL~~~~~~v~~~a~~~L~~l~~~~ 355 (670)
..+..++++|......++...++..+..+...++ .....+.+..-.. .+.. .+..++.-....+..++..++...
T Consensus 77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~ 156 (480)
T 1ho8_A 77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG 156 (480)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence 4678899999876658999999999999888665 4444444443222 1232 333344445556666656665333
Q ss_pred chhHHHHHhcCChH--HHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhh--hhhHHHHHHhhcc------------
Q 037562 356 PRCRDLVLSQGALI--PLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQV--RPALPVLAQLIRS------------ 419 (670)
Q Consensus 356 ~~~~~~i~~~~~i~--~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--~~~i~~L~~lL~~------------ 419 (670)
+...+.+.. .+. -++..+....+.+.+..++.+|..+...+..+..... ...+|.++.++..
T Consensus 157 ~~~~~~l~~--l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~ 234 (480)
T 1ho8_A 157 LHNVKLVEK--LLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVA 234 (480)
T ss_dssp TCCHHHHHH--HHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred CccHhHHHH--HhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhcccccccccc
Confidence 221111110 122 3555553323345566788888888876533332221 2345666543331
Q ss_pred ---C--ChhHHHHHHHHHHHhccCChHHHHHHHHcCCH--HHHHHhcCC-CCccchhHHHHHHHHhhcCCch----hhH-
Q 037562 420 ---N--DEEVLTDACWALSYLSDGTNDKVQAVIEAGVY--PRLVELLGH-SSSSVLTPALRTIRNIVKGDDF----QTQ- 486 (670)
Q Consensus 420 ---~--~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i--~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~----~~~- 486 (670)
+ ..+++..++.|++-++...+ ....+...++. ..++..++. ..+++.+-++.++.|+....+. ...
T Consensus 235 ~~~~~~~~Ql~Y~~ll~iWlLSF~~~-~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~ 313 (480)
T 1ho8_A 235 TNSNHLGIQLQYHSLLLIWLLTFNPV-FANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQ 313 (480)
T ss_dssp ----CCHHHHHHHHHHHHHHHTTSHH-HHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHH
T ss_pred ccCCCccHHHHHHHHHHHHHHHcCHH-HHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHH
Confidence 1 25678889999999986544 44545554432 455565654 5677888999999999876521 122
Q ss_pred HHHhCCChHHHHHhhccCC--chhHHHHHHHHHHHhhc------CCHHHHH------------------------HHHhc
Q 037562 487 CIINCGALPYFLDMLVHNH--EESIKKEVSWIISNITC------GNREQIQ------------------------AVIDS 534 (670)
Q Consensus 487 ~l~~~~~~~~L~~~l~~~~--~~~v~~~a~~~L~~l~~------~~~~~~~------------------------~l~~~ 534 (670)
.++..++ ..+++.|.... |+++....-...-.+.. .-+++.. .+.+.
T Consensus 314 ~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~ 392 (480)
T 1ho8_A 314 LLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKD 392 (480)
T ss_dssp HHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSG
T ss_pred HHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhc
Confidence 2323344 44555554332 56555443332222211 0111111 12221
Q ss_pred --CChHHHHHHhhc----------CChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHH
Q 037562 535 --GLIGPIVNLLQN----------TEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGL 602 (670)
Q Consensus 535 --~~i~~L~~ll~~----------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l 602 (670)
.++..|++++++ .|+.+..-||.-++.++.+ .|..+..+-+.|+-+.+++++.++|++|+..|+.|+
T Consensus 393 ~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~-~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~av 471 (480)
T 1ho8_A 393 NYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVEL-LPESIDVLDKTGGKADIMELLNHSDSRVKYEALKAT 471 (480)
T ss_dssp GGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHH-CTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHH-CcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHH
Confidence 257889999973 3688899999999999988 677777777889999999999999999999999999
Q ss_pred HHHHHh
Q 037562 603 ENILKV 608 (670)
Q Consensus 603 ~~l~~~ 608 (670)
..++..
T Consensus 472 Qklm~~ 477 (480)
T 1ho8_A 472 QAIIGY 477 (480)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998753
No 124
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.52 E-value=5.5e-07 Score=87.24 Aligned_cols=154 Identities=17% Similarity=0.186 Sum_probs=88.5
Q ss_pred ccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCcccc-CCCccccccceeeecccccccccccchhhhcccccc
Q 037562 22 MEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLV-PSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLR 100 (670)
Q Consensus 22 ~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~-~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~ 100 (670)
.+|++|+++++ +++.++......+++|++|+++++. +..++ ..+..+++|++|++.++. +..+. ...+..+++|+
T Consensus 52 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~ 127 (276)
T 2z62_A 52 PELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLE-NFPIGHLKTLK 127 (276)
T ss_dssp TTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSC-CCCST-TCCCTTCTTCC
T ss_pred cCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEECCCCC-ccccC-chhcccCCCCC
Confidence 47888888887 5666655444667788888887764 44444 334556777777777663 23321 11245566666
Q ss_pred eeccccccccceeccccccccccccccccccccccccccc---------------------------cccccccCCcccC
Q 037562 101 YMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQ---------------------------NLISFCSGNCAFT 153 (670)
Q Consensus 101 ~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---------------------------~l~~~~~~~~~~~ 153 (670)
+|+++++. +..+. .+.....+++|+.|.+.++. .++.++.+ ...
T Consensus 128 ~L~l~~n~-l~~~~------l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~--~~~ 198 (276)
T 2z62_A 128 ELNVAHNL-IQSFK------LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG--AFK 198 (276)
T ss_dssp EEECCSSC-CCCCC------CCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTT--SSC
T ss_pred EEECcCCc-cceec------CchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcc--ccC
Confidence 66666553 11110 01111234444444444331 12222221 234
Q ss_pred CCCccEEeEecCCCccccccCC-cCCCCccceeeeec
Q 037562 154 FPSLEILVVNYCPNMKIFSGGE-LSTPNLHKVQLSRW 189 (670)
Q Consensus 154 ~~~L~~L~i~~C~~l~~~p~~~-~~~~~L~~l~i~~~ 189 (670)
.++|+.|++.++. ++.+|... ..+++|+.|++++.
T Consensus 199 ~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 199 EIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp SCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSS
T ss_pred CCcccEEECCCCc-eeecCHhHhcccccccEEEccCC
Confidence 4589999999885 77887764 56899999988643
No 125
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.52 E-value=2.1e-07 Score=91.80 Aligned_cols=130 Identities=16% Similarity=0.170 Sum_probs=58.8
Q ss_pred CCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceecccccccccccc
Q 037562 46 MNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEV 125 (670)
Q Consensus 46 ~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~ 125 (670)
+++|++|+++++. +..++.....+++|++|+++++. ++.+.....+..+++|++|+++++. +..+. ....
T Consensus 77 ~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-------~~~~ 146 (306)
T 2z66_A 77 TTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTH-TRVAF-------NGIF 146 (306)
T ss_dssp CSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSC-CEECS-------TTTT
T ss_pred ccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCc-CCccc-------hhhc
Confidence 4444444444442 33333334445566666665542 2222111234556666666666653 11111 1112
Q ss_pred cccccccccccccccccc-ccccCCcccCCCCccEEeEecCCCcccc-ccCCcCCCCccceeeee
Q 037562 126 ITFRELKELNLLQMQNLI-SFCSGNCAFTFPSLEILVVNYCPNMKIF-SGGELSTPNLHKVQLSR 188 (670)
Q Consensus 126 ~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~~~L~~L~i~~C~~l~~~-p~~~~~~~~L~~l~i~~ 188 (670)
..+++|++|.+.++.--. .++. ....+++|+.|++++|. +..+ |..+..+++|+.|++++
T Consensus 147 ~~l~~L~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~ 208 (306)
T 2z66_A 147 NGLSSLEVLKMAGNSFQENFLPD--IFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSH 208 (306)
T ss_dssp TTCTTCCEEECTTCEEGGGEECS--CCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTT
T ss_pred ccCcCCCEEECCCCccccccchh--HHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCC
Confidence 235556666665543221 1111 23345566666666553 3333 33344455566655543
No 126
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.52 E-value=4.3e-07 Score=95.77 Aligned_cols=59 Identities=19% Similarity=0.145 Sum_probs=33.3
Q ss_pred cccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCC-cCCCCccceeeee
Q 037562 127 TFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGE-LSTPNLHKVQLSR 188 (670)
Q Consensus 127 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~-~~~~~L~~l~i~~ 188 (670)
.+++|+.|.+.++ +++.+... ....+++|+.|+++++ +++.+|... ..+++|+.|++++
T Consensus 270 ~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 270 ELLRLQEIQLVGG-QLAVVEPY-AFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp TCTTCCEEECCSS-CCSEECTT-TBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCS
T ss_pred ccccCCEEECCCC-ccceECHH-HhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccC
Confidence 3455555555554 23333221 2345677777777776 456666543 4567777777754
No 127
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.52 E-value=2.6e-07 Score=97.26 Aligned_cols=127 Identities=12% Similarity=0.075 Sum_probs=59.9
Q ss_pred CCCCcEEEEecCCCCccc-cCCCccccccceeeecccccccccccchhhhcccccceeccccccccceeccccccccccc
Q 037562 46 MNNLVILCVHCCDHLINL-VPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDE 124 (670)
Q Consensus 46 ~~~L~~L~i~~c~~l~~~-~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 124 (670)
+++|+.|++++|. +..+ +..+..+++|+.|+++++ .+....+......+++|++|+++++. +..++ .
T Consensus 119 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~---------~ 186 (487)
T 3oja_A 119 GQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVK---------G 186 (487)
T ss_dssp CSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEE---------C
T ss_pred cCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCc-ccccc---------c
Confidence 3444444444443 2222 223334455555555544 22222211122245555555555543 22221 1
Q ss_pred cccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCccceeeee
Q 037562 125 VITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSR 188 (670)
Q Consensus 125 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~ 188 (670)
...+|+|+.|.++++ +++.++.. ...+++|+.|+++++ ++..+|.....+++|+.|++++
T Consensus 187 ~~~l~~L~~L~Ls~N-~l~~~~~~--~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~ 246 (487)
T 3oja_A 187 QVVFAKLKTLDLSSN-KLAFMGPE--FQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRG 246 (487)
T ss_dssp CCCCTTCCEEECCSS-CCCEECGG--GGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTT
T ss_pred cccCCCCCEEECCCC-CCCCCCHh--HcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCC
Confidence 113566666666654 24444332 344566677776665 3555666655566666666654
No 128
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.51 E-value=4.1e-07 Score=85.91 Aligned_cols=190 Identities=11% Similarity=0.180 Sum_probs=138.9
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHH-HcCCChhhHHHHHh-CCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCC--chhH-
Q 037562 286 FVEFLMRQDYPQLQFKAAWALTN-IASGTSENTKVVID-HGAVPIFVKLL-ASPSVDVRKQTVWALGNVAGDS--PRCR- 359 (670)
Q Consensus 286 L~~ll~~~~~~~v~~~a~~~L~~-l~~~~~~~~~~i~~-~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~--~~~~- 359 (670)
+.+.+.+.+ ..-|..|+..|.. +..+.++....-.+ ..++..+...+ ++.+..++..|+.+++.++.+- +.+.
T Consensus 21 f~~~l~s~~-w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERITSSK-WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHHTCSS-HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHhhcCC-HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 456778888 6999999999999 87543332100000 12466777788 7899999999999999998422 1222
Q ss_pred HHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChh-hhhhhHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 037562 360 DLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFN-QVRPALPVLAQLIRSNDEEVLTDACWALSYLSDG 438 (670)
Q Consensus 360 ~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~ 438 (670)
..... .++.++..+ .+....++..+..++..++...+..... ....+++.+...+++.++.++..++.+|..++..
T Consensus 100 ~y~~~--llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 100 DYVSL--VFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp HHHHH--HHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 22222 578888888 6667889999999998888754221111 1467889999999999999999999999998855
Q ss_pred Ch---HHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 037562 439 TN---DKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVK 479 (670)
Q Consensus 439 ~~---~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 479 (670)
.. ......+...+++.+..++.+.+..+|..|..+++.++.
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 44 333334424899999999999999999999999998875
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.51 E-value=3.7e-08 Score=85.50 Aligned_cols=80 Identities=14% Similarity=0.100 Sum_probs=39.4
Q ss_pred cccEEEeccCcCcc--cccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccc
Q 037562 23 EVKISEAYNCYRLE--NILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLR 100 (670)
Q Consensus 23 ~L~~L~i~~c~~l~--~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~ 100 (670)
+|+.|.+.+|. ++ .++.. ...+++|+.|++++| .+..+ .....+++|+.|++++|. ++.. .+.....+++|+
T Consensus 18 ~l~~L~l~~n~-l~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~ 91 (149)
T 2je0_A 18 DVKELVLDNSR-SNEGKLEGL-TDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNR-VSGG-LEVLAEKCPNLT 91 (149)
T ss_dssp GCSEEECTTCB-CBTTBCCSC-CTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSC-CCSC-THHHHHHCTTCC
T ss_pred cCeEEEccCCc-CChhHHHHH-HhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCc-ccch-HHHHhhhCCCCC
Confidence 56666666653 33 33321 244566666666655 34444 334455566666666553 2221 112333455666
Q ss_pred eecccccc
Q 037562 101 YMEIESCD 108 (670)
Q Consensus 101 ~L~i~~c~ 108 (670)
+|+++++.
T Consensus 92 ~L~ls~N~ 99 (149)
T 2je0_A 92 HLNLSGNK 99 (149)
T ss_dssp EEECTTSC
T ss_pred EEECCCCc
Confidence 66655553
No 130
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.51 E-value=9.5e-07 Score=88.08 Aligned_cols=78 Identities=15% Similarity=0.165 Sum_probs=56.0
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccc-cCCCccccccceeeecccccccccccchhhhcccccce
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINL-VPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY 101 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~-~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~ 101 (670)
.|+.|+++++ +++.++......+++|++|+++++. +..+ +..+..+++|++|+++++. ++.+. . ...++|++
T Consensus 53 ~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~--~--~~~~~L~~ 125 (330)
T 1xku_A 53 DTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQ-LKELP--E--KMPKTLQE 125 (330)
T ss_dssp TCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSC-CSBCC--S--SCCTTCCE
T ss_pred CCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEECCCCc-CCccC--h--hhcccccE
Confidence 8999999988 5777776555789999999999885 5555 5567788999999999884 44431 1 11245666
Q ss_pred eccccc
Q 037562 102 MEIESC 107 (670)
Q Consensus 102 L~i~~c 107 (670)
|+++++
T Consensus 126 L~l~~n 131 (330)
T 1xku_A 126 LRVHEN 131 (330)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 655544
No 131
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.50 E-value=6.8e-07 Score=86.28 Aligned_cols=145 Identities=19% Similarity=0.173 Sum_probs=104.8
Q ss_pred CccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhccccc
Q 037562 21 GMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRL 99 (670)
Q Consensus 21 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L 99 (670)
..+|++|.+++| +++.++......+++|++|++++|. +..+++. +..+++|+.|++++| +++.+ ++..+..+++|
T Consensus 84 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L 159 (272)
T 3rfs_A 84 LTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHN-QLQSL-PKGVFDKLTNL 159 (272)
T ss_dssp CTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTC
T ss_pred CCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCC-ccCcc-CHHHhccCccC
Confidence 348999999988 5777765545678999999999985 6666654 467899999999999 56654 22345789999
Q ss_pred ceeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCC
Q 037562 100 RYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTP 179 (670)
Q Consensus 100 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~ 179 (670)
++|++++|. +..++. .....+++|+.|.+.++. ++.+... ....+++|+.|++.+++-. ..+|
T Consensus 160 ~~L~l~~n~-l~~~~~-------~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~l~~N~~~-------~~~~ 222 (272)
T 3rfs_A 160 TELDLSYNQ-LQSLPE-------GVFDKLTQLKDLRLYQNQ-LKSVPDG-VFDRLTSLQYIWLHDNPWD-------CTCP 222 (272)
T ss_dssp CEEECCSSC-CCCCCT-------TTTTTCTTCCEEECCSSC-CSCCCTT-TTTTCTTCCEEECCSSCBC-------CCTT
T ss_pred CEEECCCCC-cCccCH-------HHhcCCccCCEEECCCCc-CCccCHH-HHhCCcCCCEEEccCCCcc-------ccCc
Confidence 999999984 444321 123458899999999874 5555442 2456899999999988532 2245
Q ss_pred Cccceee
Q 037562 180 NLHKVQL 186 (670)
Q Consensus 180 ~L~~l~i 186 (670)
+|+.|.+
T Consensus 223 ~l~~l~~ 229 (272)
T 3rfs_A 223 GIRYLSE 229 (272)
T ss_dssp TTHHHHH
T ss_pred HHHHHHH
Confidence 6666644
No 132
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.49 E-value=5.2e-07 Score=86.44 Aligned_cols=142 Identities=18% Similarity=0.210 Sum_probs=95.7
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM 102 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L 102 (670)
+|+.|.+.+| +++.++. ...+++|+.|+++++. +..+++ ...+++|+.|+++++ +++.+ +.... ++|++|
T Consensus 42 ~L~~L~l~~n-~i~~l~~--l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~N-~l~~l---~~~~~-~~L~~L 111 (263)
T 1xeu_A 42 GVQNFNGDNS-NIQSLAG--MQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRN-RLKNL---NGIPS-ACLSRL 111 (263)
T ss_dssp TCSEEECTTS-CCCCCTT--GGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSS-CCSCC---TTCCC-SSCCEE
T ss_pred cCcEEECcCC-CcccchH--HhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCCC-ccCCc---Ccccc-CcccEE
Confidence 7888888887 5666652 4678889999988874 666665 667888888888887 44444 22223 788888
Q ss_pred ccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCcc
Q 037562 103 EIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLH 182 (670)
Q Consensus 103 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~ 182 (670)
++++|. ++.+. ....+++|+.|.++++. ++.++ ....+++|+.|++++|. +..+ .....+++|+
T Consensus 112 ~L~~N~-l~~~~---------~l~~l~~L~~L~Ls~N~-i~~~~---~l~~l~~L~~L~L~~N~-i~~~-~~l~~l~~L~ 175 (263)
T 1xeu_A 112 FLDNNE-LRDTD---------SLIHLKNLEILSIRNNK-LKSIV---MLGFLSKLEVLDLHGNE-ITNT-GGLTRLKKVN 175 (263)
T ss_dssp ECCSSC-CSBSG---------GGTTCTTCCEEECTTSC-CCBCG---GGGGCTTCCEEECTTSC-CCBC-TTSTTCCCCC
T ss_pred EccCCc-cCCCh---------hhcCcccccEEECCCCc-CCCCh---HHccCCCCCEEECCCCc-Ccch-HHhccCCCCC
Confidence 888873 43331 23457788888887753 55543 24457888888888774 4444 3445577888
Q ss_pred ceeeeecc
Q 037562 183 KVQLSRWD 190 (670)
Q Consensus 183 ~l~i~~~~ 190 (670)
.|++++..
T Consensus 176 ~L~l~~N~ 183 (263)
T 1xeu_A 176 WIDLTGQK 183 (263)
T ss_dssp EEEEEEEE
T ss_pred EEeCCCCc
Confidence 88886644
No 133
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.49 E-value=3.3e-07 Score=90.55 Aligned_cols=162 Identities=14% Similarity=-0.002 Sum_probs=94.0
Q ss_pred CccccEEEeccCcCcc-cccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccc-c
Q 037562 21 GMEVKISEAYNCYRLE-NILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLV-R 98 (670)
Q Consensus 21 ~~~L~~L~i~~c~~l~-~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~-~ 98 (670)
..+|++|+++++. ++ .++. ....+++|++|+++++.--..+|..+..+++|++|+++++. ++... +..+..++ +
T Consensus 100 l~~L~~L~Ls~n~-l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~-p~~l~~l~~~ 175 (313)
T 1ogq_A 100 LTQLHYLYITHTN-VSGAIPD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAI-PDSYGSFSKL 175 (313)
T ss_dssp CTTCSEEEEEEEC-CEEECCG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEEC-CGGGGCCCTT
T ss_pred CCCCCEEECcCCe-eCCcCCH-HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcC-CHHHhhhhhc
Confidence 3488999988874 44 3343 24678888888888875322455556678888888888874 33211 23445666 7
Q ss_pred cceeccccccccceecccc---------------ccccccccccccccccccccccccccccccCCcccCCCCccEEeEe
Q 037562 99 LRYMEIESCDKITEIVLVD---------------DVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVN 163 (670)
Q Consensus 99 L~~L~i~~c~~l~~~~~~~---------------~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~ 163 (670)
|++|+++++.--..++..- ....+.....+++|+.|.+.++.--..++. ...+++|+.|++.
T Consensus 176 L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~l~~L~~L~Ls 252 (313)
T 1ogq_A 176 FTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK---VGLSKNLNGLDLR 252 (313)
T ss_dssp CCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG---CCCCTTCCEEECC
T ss_pred CcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc---ccccCCCCEEECc
Confidence 8888887764221211100 000111223456666666665532211111 3346778888887
Q ss_pred cCCCccccccCCcCCCCccceeeeec
Q 037562 164 YCPNMKIFSGGELSTPNLHKVQLSRW 189 (670)
Q Consensus 164 ~C~~l~~~p~~~~~~~~L~~l~i~~~ 189 (670)
++.--..+|..+..+++|+.|++++.
T Consensus 253 ~N~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 253 NNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp SSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred CCcccCcCChHHhcCcCCCEEECcCC
Confidence 77543366766666777777777543
No 134
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.49 E-value=3.7e-07 Score=101.90 Aligned_cols=157 Identities=11% Similarity=0.064 Sum_probs=101.3
Q ss_pred ccCCccccEEEeccCcCccc------------------ccccccc--cCCCCcEEEEecCCCCccccCCCccccccceee
Q 037562 18 VENGMEVKISEAYNCYRLEN------------------ILIEESS--VMNNLVILCVHCCDHLINLVPSSTSFQNLTNLV 77 (670)
Q Consensus 18 ~~~~~~L~~L~i~~c~~l~~------------------~~~~~~~--~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~ 77 (670)
+....+|+.|.++++. ++. +|.. .. .+++|+.|++++|.-...+|..+..+++|+.|+
T Consensus 444 l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~-l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521 (876)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred HhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChh-hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence 3334489999998875 555 5543 24 788999999999887777777778889999999
Q ss_pred ecccccccc-cccchhhhc-------ccccceeccccccccceeccccccccccccccccccccccccccccccccccCC
Q 037562 78 VSHCKRLKI-VLTSSIAKT-------LVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGN 149 (670)
Q Consensus 78 i~~c~~l~~-l~~~~~~~~-------l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 149 (670)
++++..++. .. +..+.. +|+|++|+++++. +..++.. .....+++|+.|.++++. ++.++
T Consensus 522 Ls~N~~lsg~~i-P~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~------~~l~~L~~L~~L~Ls~N~-l~~lp--- 589 (876)
T 4ecn_A 522 IACNRGISAAQL-KADWTRLADDEDTGPKIQIFYMGYNN-LEEFPAS------ASLQKMVKLGLLDCVHNK-VRHLE--- 589 (876)
T ss_dssp CTTCTTSCHHHH-HHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCH------HHHTTCTTCCEEECTTSC-CCBCC---
T ss_pred CcCCCCcccccc-hHHHHhhhhcccccCCccEEEeeCCc-CCccCCh------hhhhcCCCCCEEECCCCC-cccch---
Confidence 998875554 22 122333 4588888888775 3343310 022346777777777654 33444
Q ss_pred cccCCCCccEEeEecCCCccccccCCcCCCC-ccceeeeec
Q 037562 150 CAFTFPSLEILVVNYCPNMKIFSGGELSTPN-LHKVQLSRW 189 (670)
Q Consensus 150 ~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~-L~~l~i~~~ 189 (670)
....+++|+.|++++|. +..+|..+..+++ |+.|++++.
T Consensus 590 ~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 590 AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSS
T ss_pred hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCC
Confidence 24456677777777664 4466666666666 777766543
No 135
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.49 E-value=9e-07 Score=88.31 Aligned_cols=160 Identities=16% Similarity=0.171 Sum_probs=88.9
Q ss_pred CccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccc
Q 037562 21 GMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLR 100 (670)
Q Consensus 21 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~ 100 (670)
..+|++|.+.++ +++.+.......+++|++|+++++. +..++... +++|++|+++++. ++.+ ++..+..+++|+
T Consensus 77 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~--~~~L~~L~l~~n~-i~~~-~~~~~~~l~~L~ 150 (332)
T 2ft3_A 77 LQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNL--PSSLVELRIHDNR-IRKV-PKGVFSGLRNMN 150 (332)
T ss_dssp CTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSC--CTTCCEEECCSSC-CCCC-CSGGGSSCSSCC
T ss_pred CCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCc-CCccCccc--cccCCEEECCCCc-cCcc-CHhHhCCCccCC
Confidence 348899998887 4666644445678888888888774 55665543 2677777777663 3333 122345666777
Q ss_pred eecccccccc------------------------ceecc-----------ccc---cccccccccccccccccccccccc
Q 037562 101 YMEIESCDKI------------------------TEIVL-----------VDD---VVAQDEVITFRELKELNLLQMQNL 142 (670)
Q Consensus 101 ~L~i~~c~~l------------------------~~~~~-----------~~~---~~~~~~~~~~~~L~~L~l~~~~~l 142 (670)
+|++.++.-- ..++. ... .........+++|+.|.+.++ .+
T Consensus 151 ~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N-~l 229 (332)
T 2ft3_A 151 CIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-QI 229 (332)
T ss_dssp EEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS-CC
T ss_pred EEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cC
Confidence 7766655321 00000 000 000011122344444444443 22
Q ss_pred cccccCCcccCCCCccEEeEecCCCccccccCCcCCCCccceeeeec
Q 037562 143 ISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRW 189 (670)
Q Consensus 143 ~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~~ 189 (670)
+.+... ....+++|+.|++.+| ++..+|.+...+++|+.|++++.
T Consensus 230 ~~~~~~-~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 230 RMIENG-SLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp CCCCTT-GGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS
T ss_pred CcCChh-HhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC
Confidence 222221 2345677888888877 46677777777778888877643
No 136
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.46 E-value=5.2e-07 Score=97.07 Aligned_cols=59 Identities=22% Similarity=0.251 Sum_probs=42.8
Q ss_pred cccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccC-CcCCCCccceeeeecc
Q 037562 127 TFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGG-ELSTPNLHKVQLSRWD 190 (670)
Q Consensus 127 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~-~~~~~~L~~l~i~~~~ 190 (670)
.+|+|++|+++++ +++.++. ...+++|+.|+++++ +++.+|.. ...+++|+.|++++.+
T Consensus 449 ~l~~L~~L~Ls~N-~l~~ip~---~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 449 FLPRLQELYISRN-KLKTLPD---ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCTTCCEEECCSS-CCSSCCC---GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred cCChhcEEECCCC-ccCcCCC---cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence 5778888888877 5666654 245788999999987 56666554 5568889999886544
No 137
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.46 E-value=7.5e-07 Score=93.33 Aligned_cols=58 Identities=16% Similarity=0.204 Sum_probs=27.0
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccc-cCCCccccccceeeeccc
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINL-VPSSTSFQNLTNLVVSHC 81 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~-~~~~~~~~~L~~L~i~~c 81 (670)
+|++|+++++.-...++......+++|++|+++++. +..+ +..+..+++|++|++++|
T Consensus 55 ~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n 113 (455)
T 3v47_A 55 DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFNGLANLEVLTLTQC 113 (455)
T ss_dssp TCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTTTTCTTCCEEECTTS
T ss_pred cccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhccCcccCCEEeCCCC
Confidence 555665555543223332223445555555555553 2222 333344555555555554
No 138
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.46 E-value=7.4e-07 Score=99.75 Aligned_cols=63 Identities=13% Similarity=0.021 Sum_probs=35.1
Q ss_pred ccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceecccccc
Q 037562 44 SVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCD 108 (670)
Q Consensus 44 ~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 108 (670)
..+++|+.|++++|.-...+|..++.+++|+.|++++|.-...+ +..+..+++|+.|++++|+
T Consensus 487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC--CGGGGGCTTCCEEECCSSE
T ss_pred hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcC--CHHHcCCCCCCEEECCCCc
Confidence 44556666666655533344444555666666666666432222 2345566777777776664
No 139
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.44 E-value=3.1e-07 Score=99.34 Aligned_cols=61 Identities=25% Similarity=0.245 Sum_probs=34.8
Q ss_pred ccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccC-CcCCCCccceeeeec
Q 037562 126 ITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGG-ELSTPNLHKVQLSRW 189 (670)
Q Consensus 126 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~-~~~~~~L~~l~i~~~ 189 (670)
..+++|+.|++.++. ++.+... ....+|+|+.|++++| ++..+|.. ...+++|+.|++++.
T Consensus 467 ~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 467 TELRNLTFLDLSQCQ-LEQLSPT-AFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp TTCTTCCEEECTTSC-CCEECTT-TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred hcccCCCEEECCCCc-cccCChh-hhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCC
Confidence 345666666666653 3333221 2345677777777776 45555433 445677777777543
No 140
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.43 E-value=7.4e-07 Score=97.15 Aligned_cols=154 Identities=19% Similarity=0.184 Sum_probs=95.4
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM 102 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L 102 (670)
.|+.|++.++ +++.++......+++|+.|+++++ .+..+|.....+++|++|++++|. ++.+. +..+..+++|++|
T Consensus 255 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L 330 (606)
T 3t6q_A 255 SVESINLQKH-YFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANK-FENLC-QISASNFPSLTHL 330 (606)
T ss_dssp EEEEEECTTC-CCSSCCTTTTTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCC-CSBGG-GGCGGGCTTCSEE
T ss_pred ceeEEEeecC-ccCccCHHHhccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCC-cCcCc-hhhhhccCcCCEE
Confidence 6888888877 466666554577899999999998 477888888889999999999984 44432 2456789999999
Q ss_pred ccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCcc
Q 037562 103 EIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLH 182 (670)
Q Consensus 103 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~ 182 (670)
++.+|.....++. .....+++|+.|.+.++.--...+.......+++|+.|++.+|.--...|.....+++|+
T Consensus 331 ~l~~n~~~~~~~~-------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 403 (606)
T 3t6q_A 331 SIKGNTKRLELGT-------GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE 403 (606)
T ss_dssp ECCSCSSCCBCCS-------STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCS
T ss_pred ECCCCCcccccch-------hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCC
Confidence 9998864323221 112345666666666543211110011233455566666655543222333344455555
Q ss_pred ceeee
Q 037562 183 KVQLS 187 (670)
Q Consensus 183 ~l~i~ 187 (670)
+|+++
T Consensus 404 ~L~l~ 408 (606)
T 3t6q_A 404 LLDLA 408 (606)
T ss_dssp EEECT
T ss_pred eEECC
Confidence 55554
No 141
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.43 E-value=6.1e-08 Score=81.84 Aligned_cols=121 Identities=16% Similarity=0.145 Sum_probs=94.1
Q ss_pred cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhH
Q 037562 280 SGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCR 359 (670)
Q Consensus 280 ~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 359 (670)
...++.++.+|++++ +.+|..|+++|+.+.. ..++.|+.++.++++.+|..|+++|+++.. +
T Consensus 11 ~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~--- 72 (131)
T 1te4_A 11 SSGLVPRGSHMADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E--- 72 (131)
T ss_dssp ----------CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---
T ss_pred cccHHHHHHHhcCCC-HHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---
Confidence 346788899999988 7999999999987753 136899999999999999999999999852 1
Q ss_pred HHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHh
Q 037562 360 DLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYL 435 (670)
Q Consensus 360 ~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l 435 (670)
..++.|+..+ ++.++.++..|+++|.++.. ...++.|..+++++++.++..++.+|..+
T Consensus 73 ------~a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 73 ------RAVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp ------HHHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 1478888888 77889999999999999863 45789999999999999999999988753
No 142
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.43 E-value=2e-06 Score=81.12 Aligned_cols=191 Identities=11% Similarity=0.131 Sum_probs=138.7
Q ss_pred HHHHhcccCChhHHHHHHHHHHh-hhcCCCCCC--hhhhhhhHHHHHHhh-ccCChhHHHHHHHHHHHhccCCh-HHHH-
Q 037562 371 LLAELNENANLSMLRTATWTLFN-FCRGKPQPP--FNQVRPALPVLAQLI-RSNDEEVLTDACWALSYLSDGTN-DKVQ- 444 (670)
Q Consensus 371 Ll~~l~~~~~~~~~~~a~~~L~~-l~~~~~~~~--~~~~~~~i~~L~~lL-~~~~~~v~~~al~~L~~l~~~~~-~~~~- 444 (670)
+...+ .+.+..-|..|+..|.. ++.+.+... ......++..+.+.+ ++.+..++..|+.+++.++..-. ....
T Consensus 21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 34445 67788889999999999 875533222 222356788888999 68899999999999999984322 1111
Q ss_pred HHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCC
Q 037562 445 AVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGN 524 (670)
Q Consensus 445 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 524 (670)
.... .+++.++..+.+....|+..+..++-.++...+.....-.-..+++.|...+++. ++.+|..++.++..++...
T Consensus 100 ~y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 100 DYVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred HHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHc
Confidence 1222 4778999999998889999999998888864321111000013677888999998 9999999999999998643
Q ss_pred H---HHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcC
Q 037562 525 R---EQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATK 564 (670)
Q Consensus 525 ~---~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 564 (670)
+ ......+...++|.+..++.+.+.+||..|..+++.++.
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3 333333424689999999999999999999999999875
No 143
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.43 E-value=9.9e-07 Score=91.90 Aligned_cols=54 Identities=11% Similarity=0.114 Sum_probs=27.4
Q ss_pred cccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCccceeee
Q 037562 127 TFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLS 187 (670)
Q Consensus 127 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~ 187 (670)
.+++|+.|.+.++..+..+. ...+++|+.|++.+| +++.+| ...+++|+.|+++
T Consensus 146 ~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n-~l~~l~--l~~l~~L~~L~l~ 199 (457)
T 3bz5_A 146 HNTQLTELDCHLNKKITKLD----VTPQTQLTTLDCSFN-KITELD--VSQNKLLNRLNCD 199 (457)
T ss_dssp TCTTCCEEECTTCSCCCCCC----CTTCTTCCEEECCSS-CCCCCC--CTTCTTCCEEECC
T ss_pred cCCcCCEEECCCCCcccccc----cccCCcCCEEECCCC-ccceec--cccCCCCCEEECc
Confidence 35556666666555444442 234556666666655 344444 2334555555554
No 144
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.42 E-value=3.7e-07 Score=97.45 Aligned_cols=159 Identities=14% Similarity=0.133 Sum_probs=94.9
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeeccccccccccc-chhhhcccccce
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLT-SSIAKTLVRLRY 101 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~l~~L~~ 101 (670)
+|+.|.++++. +...+. ...+++|++|++++|.--...+.....+++|+.|++++|. ++.+.. +..+..+++|++
T Consensus 303 ~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~ 378 (520)
T 2z7x_B 303 NIKNFTVSGTR-MVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQ 378 (520)
T ss_dssp CCSEEEEESSC-CCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCE
T ss_pred ceeEEEcCCCc-cccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCE
Confidence 58888888775 333221 1467788888888875333355556677888888888774 332210 123567778888
Q ss_pred eccccccccceecccc--------------ccccccccccc-cccccccccccccccccccCCcccCCCCccEEeEecCC
Q 037562 102 MEIESCDKITEIVLVD--------------DVVAQDEVITF-RELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCP 166 (670)
Q Consensus 102 L~i~~c~~l~~~~~~~--------------~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~ 166 (670)
|+++++.--..++... ..........+ ++|+.|.++++ +++.++.. ...+++|+.|++++|
T Consensus 379 L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~--~~~l~~L~~L~L~~N- 454 (520)
T 2z7x_B 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQ--VVKLEALQELNVASN- 454 (520)
T ss_dssp EECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGG--GGGCTTCCEEECCSS-
T ss_pred EECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchh--hhcCCCCCEEECCCC-
Confidence 8777765222122100 00000001122 56777777766 45555543 347888999999887
Q ss_pred CccccccC-CcCCCCccceeeeec
Q 037562 167 NMKIFSGG-ELSTPNLHKVQLSRW 189 (670)
Q Consensus 167 ~l~~~p~~-~~~~~~L~~l~i~~~ 189 (670)
+++.+|.. ...+++|+.|++++.
T Consensus 455 ~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 455 QLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCccCHHHhccCCcccEEECcCC
Confidence 57778876 556788888888653
No 145
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.42 E-value=4.9e-07 Score=80.13 Aligned_cols=134 Identities=17% Similarity=0.122 Sum_probs=101.6
Q ss_pred ccCCCCcEEEEecCCCCc--cccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceecccccccc
Q 037562 44 SVMNNLVILCVHCCDHLI--NLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVA 121 (670)
Q Consensus 44 ~~~~~L~~L~i~~c~~l~--~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~ 121 (670)
..+++|++|++++|. +. .++.....+++|+.|++++|. ++.+ ..+..+++|++|++++|. +...+
T Consensus 21 ~~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~-l~~~~------- 87 (168)
T 2ell_A 21 RTPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENR-IFGGL------- 87 (168)
T ss_dssp SCTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCC-CCSCC-------
T ss_pred CCcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCc-CchHH-------
Confidence 456899999999986 55 677767889999999999996 6665 566789999999999986 33211
Q ss_pred ccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCcccccc----CCcCCCCccceeeeeccCC
Q 037562 122 QDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSG----GELSTPNLHKVQLSRWDGE 192 (670)
Q Consensus 122 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~----~~~~~~~L~~l~i~~~~~~ 192 (670)
+.....+|+|+.|.+.++ +++.++.......+|+|+.|++.+|+ +..+|. .+..+|+|+.|+++++...
T Consensus 88 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 88 DMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred HHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 112234899999999988 57776532245678999999999985 566665 4566899999999877654
No 146
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.42 E-value=6e-07 Score=97.11 Aligned_cols=156 Identities=13% Similarity=0.084 Sum_probs=112.7
Q ss_pred ccccEEEeccCcCccccc--ccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccc
Q 037562 22 MEVKISEAYNCYRLENIL--IEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRL 99 (670)
Q Consensus 22 ~~L~~L~i~~c~~l~~~~--~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L 99 (670)
.+|+.|+++++. +.... ......+++|+.|++++|. +..+++....+++|++|++++|. +....+...+..+++|
T Consensus 347 ~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 347 PSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNL 423 (570)
T ss_dssp TTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSE-EESCTTSCTTTTCTTC
T ss_pred CCCCEEeCcCCc-cCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCc-cccccchhhhhcCCCC
Confidence 489999999884 44432 2224678999999999985 55666556788999999999985 3333322456789999
Q ss_pred ceeccccccccceeccccccccccccccccccccccccccccc-cccccCCcccCCCCccEEeEecCCCccccccCCcCC
Q 037562 100 RYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNL-ISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELST 178 (670)
Q Consensus 100 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~ 178 (670)
++|++++|.-.... +.....+++|+.|.+.++.-. ..++. ....+++|+.|++.+|.--...|..+..+
T Consensus 424 ~~L~l~~n~l~~~~--------~~~~~~l~~L~~L~l~~n~l~~~~~p~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 493 (570)
T 2z63_A 424 IYLDISHTHTRVAF--------NGIFNGLSSLEVLKMAGNSFQENFLPD--IFTELRNLTFLDLSQCQLEQLSPTAFNSL 493 (570)
T ss_dssp CEEECTTSCCEECC--------TTTTTTCTTCCEEECTTCEEGGGEECS--CCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred CEEeCcCCcccccc--------hhhhhcCCcCcEEECcCCcCccccchh--hhhcccCCCEEECCCCccccCChhhhhcc
Confidence 99999999632221 123345899999999998744 23433 35678999999999996433347777788
Q ss_pred CCccceeeeecc
Q 037562 179 PNLHKVQLSRWD 190 (670)
Q Consensus 179 ~~L~~l~i~~~~ 190 (670)
++|+.|++++..
T Consensus 494 ~~L~~L~l~~n~ 505 (570)
T 2z63_A 494 SSLQVLNMASNQ 505 (570)
T ss_dssp TTCCEEECCSSC
T ss_pred cCCCEEeCCCCc
Confidence 999999997653
No 147
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.41 E-value=3.9e-07 Score=102.03 Aligned_cols=133 Identities=14% Similarity=-0.021 Sum_probs=70.8
Q ss_pred cCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceeccccccccccc
Q 037562 45 VMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDE 124 (670)
Q Consensus 45 ~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 124 (670)
.+++|+.|++++|.--..+|..+..+++|+.|++++|.--..+ +..+..+++|++|++++|.--..+ +..
T Consensus 416 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~--------p~~ 485 (768)
T 3rgz_A 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI--PQELMYVKTLETLILDFNDLTGEI--------PSG 485 (768)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCC--CGGGGGCTTCCEEECCSSCCCSCC--------CGG
T ss_pred cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcC--CHHHcCCCCceEEEecCCcccCcC--------CHH
Confidence 3444444444444321122333334445555555544322111 123344555555555554321111 122
Q ss_pred cccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCccceeeeec
Q 037562 125 VITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRW 189 (670)
Q Consensus 125 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~~ 189 (670)
...+++|+.|.+.++.--..++. ....+++|+.|++++|.-...+|..+..+++|+.|++++.
T Consensus 486 l~~l~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 486 LSNCTNLNWISLSNNRLTGEIPK--WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred HhcCCCCCEEEccCCccCCcCCh--HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 34567777777777764434433 2456788888888888665577777777888888888654
No 148
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.41 E-value=1.9e-06 Score=85.93 Aligned_cols=79 Identities=11% Similarity=0.126 Sum_probs=59.8
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccc-cCCCccccccceeeecccccccccccchhhhcccccce
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINL-VPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY 101 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~-~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~ 101 (670)
+|+.|+++++. ++.++......+++|++|++++|. +..+ +..+..+++|++|+++++ .++.+. .. ..++|++
T Consensus 55 ~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~--~~--~~~~L~~ 127 (332)
T 2ft3_A 55 DTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKN-HLVEIP--PN--LPSSLVE 127 (332)
T ss_dssp TCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSS-CCCSCC--SS--CCTTCCE
T ss_pred CCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCC-cCCccC--cc--ccccCCE
Confidence 89999999884 777765445789999999999985 6565 445677899999999988 455541 11 2279999
Q ss_pred ecccccc
Q 037562 102 MEIESCD 108 (670)
Q Consensus 102 L~i~~c~ 108 (670)
|+++++.
T Consensus 128 L~l~~n~ 134 (332)
T 2ft3_A 128 LRIHDNR 134 (332)
T ss_dssp EECCSSC
T ss_pred EECCCCc
Confidence 9987764
No 149
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.41 E-value=1.4e-06 Score=93.90 Aligned_cols=31 Identities=16% Similarity=0.124 Sum_probs=15.6
Q ss_pred CCCccEEeEecCCCccccccCCcCCCCccceeeee
Q 037562 154 FPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSR 188 (670)
Q Consensus 154 ~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~ 188 (670)
+++|+.|+++++ +++.+|. .+++|+.|++++
T Consensus 240 l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~ 270 (622)
T 3g06_A 240 PSELKELMVSGN-RLTSLPM---LPSGLLSLSVYR 270 (622)
T ss_dssp CTTCCEEECCSS-CCSCCCC---CCTTCCEEECCS
T ss_pred CCcCcEEECCCC-CCCcCCc---ccccCcEEeCCC
Confidence 355555555554 3444554 244555555543
No 150
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.39 E-value=8.8e-07 Score=95.27 Aligned_cols=155 Identities=15% Similarity=0.103 Sum_probs=109.3
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCcccc-CCCccccccceeeecccccccccccchhhhcccccce
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLV-PSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY 101 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~-~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~ 101 (670)
+|++|+++++. ++.++......+++|++|+++++. +..++ ..+..+++|++|++++|. ++.+ ++..+..+++|++
T Consensus 27 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~ 102 (549)
T 2z81_A 27 AMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNH-LSSL-SSSWFGPLSSLKY 102 (549)
T ss_dssp TCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSC-CCSC-CHHHHTTCTTCCE
T ss_pred CccEEECcCCc-cCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCCCc-cCcc-CHHHhccCCCCcE
Confidence 89999999885 777655445778999999999884 55655 346778999999999883 4444 2334678999999
Q ss_pred eccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCc
Q 037562 102 MEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNL 181 (670)
Q Consensus 102 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L 181 (670)
|+++++. ++.+. .+.....+++|++|.+.++..+..++.. ....+++|+.|++.+|.--...|.....+++|
T Consensus 103 L~Ls~n~-l~~~~------~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 174 (549)
T 2z81_A 103 LNLMGNP-YQTLG------VTSLFPNLTNLQTLRIGNVETFSEIRRI-DFAGLTSLNELEIKALSLRNYQSQSLKSIRDI 174 (549)
T ss_dssp EECTTCC-CSSSC------SSCSCTTCTTCCEEEEEESSSCCEECTT-TTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred EECCCCc-ccccc------hhhhhhccCCccEEECCCCccccccCHh-hhhcccccCeeeccCCcccccChhhhhccccC
Confidence 9999885 32221 0112345788999999888767666542 24567889999998886444466666667777
Q ss_pred cceeeeec
Q 037562 182 HKVQLSRW 189 (670)
Q Consensus 182 ~~l~i~~~ 189 (670)
++|+++..
T Consensus 175 ~~L~l~~n 182 (549)
T 2z81_A 175 HHLTLHLS 182 (549)
T ss_dssp EEEEEECS
T ss_pred ceEecccC
Confidence 77776543
No 151
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.37 E-value=5.3e-07 Score=89.03 Aligned_cols=133 Identities=17% Similarity=0.116 Sum_probs=65.9
Q ss_pred CCCcEEEEecCCCCcccc-CCCccccccceeeecccccccccccchhh--hcccccceeccccccccceecccccccccc
Q 037562 47 NNLVILCVHCCDHLINLV-PSSTSFQNLTNLVVSHCKRLKIVLTSSIA--KTLVRLRYMEIESCDKITEIVLVDDVVAQD 123 (670)
Q Consensus 47 ~~L~~L~i~~c~~l~~~~-~~~~~~~~L~~L~i~~c~~l~~l~~~~~~--~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 123 (670)
++|++|+++++. +..++ ..+..+++|++|+++++.-......++.. ..+++|++|+++++. ++.+... ...
T Consensus 149 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~----~~~ 222 (312)
T 1wwl_A 149 PGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGV----CSA 222 (312)
T ss_dssp TTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHH----HHH
T ss_pred CCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHH----HHH
Confidence 566666666554 33333 33455666666666666432221001111 456666666666653 2211100 000
Q ss_pred ccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCccceeeeec
Q 037562 124 EVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRW 189 (670)
Q Consensus 124 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~~ 189 (670)
....+++|+.|.++++. ++..........+++|+.|+++++. ++.+|.... ++|+.|++++.
T Consensus 223 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N 284 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYN 284 (312)
T ss_dssp HHHTTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSS
T ss_pred HHhcCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCC
Confidence 01134667777776653 3332211112335677777777763 556666554 67777777543
No 152
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.37 E-value=4.3e-07 Score=99.17 Aligned_cols=88 Identities=13% Similarity=0.058 Sum_probs=66.3
Q ss_pred ccCCccccEEEeccCcCccc------------------ccccccc--cCCCCcEEEEecCCCCccccCCCccccccceee
Q 037562 18 VENGMEVKISEAYNCYRLEN------------------ILIEESS--VMNNLVILCVHCCDHLINLVPSSTSFQNLTNLV 77 (670)
Q Consensus 18 ~~~~~~L~~L~i~~c~~l~~------------------~~~~~~~--~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~ 77 (670)
+....+|++|+++++. ++. +|.. .. .+++|++|++++|.-...+|..+..+++|+.|+
T Consensus 202 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279 (636)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred HhcccCCCEEECcCCc-cccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence 3334589999999886 666 5544 35 789999999999987777888888899999999
Q ss_pred ecccccccc-cccchhhhcc------cccceecccccc
Q 037562 78 VSHCKRLKI-VLTSSIAKTL------VRLRYMEIESCD 108 (670)
Q Consensus 78 i~~c~~l~~-l~~~~~~~~l------~~L~~L~i~~c~ 108 (670)
+++|..++. .. +..+..+ ++|++|++.+|.
T Consensus 280 Ls~n~~l~~~~l-p~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 280 VACNRGISGEQL-KDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp CTTCTTSCHHHH-HHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred CcCCCCCccccc-hHHHHhhhccccCCCCCEEECCCCc
Confidence 999975654 22 2334444 889999888774
No 153
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.37 E-value=5.7e-08 Score=105.81 Aligned_cols=164 Identities=16% Similarity=0.159 Sum_probs=106.8
Q ss_pred cccEEEeccCcCcccccc--------------cccccCCCCcEEEEecCCCCccc-cCCCc-cccccceeeecccccccc
Q 037562 23 EVKISEAYNCYRLENILI--------------EESSVMNNLVILCVHCCDHLINL-VPSST-SFQNLTNLVVSHCKRLKI 86 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~--------------~~~~~~~~L~~L~i~~c~~l~~~-~~~~~-~~~~L~~L~i~~c~~l~~ 86 (670)
+|++|.+.+|+.+.+... .....+++|++|++++|. +... +.... .+++|++|++.+|..+..
T Consensus 67 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 145 (594)
T 2p1m_B 67 KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFST 145 (594)
T ss_dssp TCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred CceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence 789999999887654421 012357899999999885 4322 11222 578999999999987766
Q ss_pred cccchhhhcccccceeccccccccceeccccccccccccccccccccccccccc-cccccccCCcccCCCCccEEeEecC
Q 037562 87 VLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQ-NLISFCSGNCAFTFPSLEILVVNYC 165 (670)
Q Consensus 87 l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~~~~L~~L~i~~C 165 (670)
........++++|++|++.+|. +..... .........+|+|++|.+.+|. .+..-........+|+|++|++.+|
T Consensus 146 ~~l~~~~~~~~~L~~L~L~~~~-i~~~~~---~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 146 DGLAAIAATCRNLKELDLRESD-VDDVSG---HWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp HHHHHHHHHCTTCCEEECTTCE-EECCCG---GGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred HHHHHHHHhCCCCCEEeCcCCc-cCCcch---HHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 3223445578999999999987 332110 0001112357799999998886 1211000001234799999999999
Q ss_pred CCccccccCCcCCCCccceeeeeccC
Q 037562 166 PNMKIFSGGELSTPNLHKVQLSRWDG 191 (670)
Q Consensus 166 ~~l~~~p~~~~~~~~L~~l~i~~~~~ 191 (670)
..+..+|.....+++|++|.++.+..
T Consensus 222 ~~~~~l~~~~~~~~~L~~L~l~~~~~ 247 (594)
T 2p1m_B 222 VPLEKLATLLQRAPQLEELGTGGYTA 247 (594)
T ss_dssp SCHHHHHHHHHHCTTCSEEECSBCCC
T ss_pred CcHHHHHHHHhcCCcceEcccccccC
Confidence 88877777666788999998765543
No 154
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.37 E-value=4.5e-07 Score=101.20 Aligned_cols=152 Identities=15% Similarity=0.101 Sum_probs=103.4
Q ss_pred CCccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCcc--ccCCC-------ccccccceeeecccccccccccc
Q 037562 20 NGMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLIN--LVPSS-------TSFQNLTNLVVSHCKRLKIVLTS 90 (670)
Q Consensus 20 ~~~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~--~~~~~-------~~~~~L~~L~i~~c~~l~~l~~~ 90 (670)
...+|+.|.+++|.-...+|.. ...+++|+.|+++++..+.. +|..+ ..+++|+.|++++|. +..+ +
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~i--p 564 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEF--P 564 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBC--C
T ss_pred cCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCcc--C
Confidence 3458999999999777777743 47899999999999875654 55433 345699999999884 4444 2
Q ss_pred h--hhhcccccceeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCC-ccEEeEecCCC
Q 037562 91 S--IAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPS-LEILVVNYCPN 167 (670)
Q Consensus 91 ~--~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~-L~~L~i~~C~~ 167 (670)
. .+..+++|+.|+++++. +..++ ....+++|+.|.++++. ++.++.. ...+++ |+.|++.+|.
T Consensus 565 ~~~~l~~L~~L~~L~Ls~N~-l~~lp---------~~~~L~~L~~L~Ls~N~-l~~lp~~--l~~l~~~L~~L~Ls~N~- 630 (876)
T 4ecn_A 565 ASASLQKMVKLGLLDCVHNK-VRHLE---------AFGTNVKLTDLKLDYNQ-IEEIPED--FCAFTDQVEGLGFSHNK- 630 (876)
T ss_dssp CHHHHTTCTTCCEEECTTSC-CCBCC---------CCCTTSEESEEECCSSC-CSCCCTT--SCEECTTCCEEECCSSC-
T ss_pred ChhhhhcCCCCCEEECCCCC-cccch---------hhcCCCcceEEECcCCc-cccchHH--HhhccccCCEEECcCCC-
Confidence 3 57789999999998875 33432 22356778888777764 3344432 445677 8888887775
Q ss_pred ccccccCCcCC--CCccceeeeec
Q 037562 168 MKIFSGGELST--PNLHKVQLSRW 189 (670)
Q Consensus 168 l~~~p~~~~~~--~~L~~l~i~~~ 189 (670)
+..+|...... ++|+.|++++.
T Consensus 631 L~~lp~~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 631 LKYIPNIFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp CCSCCSCCCTTCSSCEEEEECCSS
T ss_pred CCcCchhhhccccCCCCEEECcCC
Confidence 55677654433 34777777554
No 155
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.37 E-value=1.8e-06 Score=82.12 Aligned_cols=132 Identities=15% Similarity=0.130 Sum_probs=97.2
Q ss_pred CccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhccccc
Q 037562 21 GMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRL 99 (670)
Q Consensus 21 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L 99 (670)
..+|++|.++++ +++.++......+++|+.|+++++. +..+++. +..+++|++|+++++ +++.+ ++..+..+++|
T Consensus 58 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L 133 (251)
T 3m19_A 58 LTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGN-QLKSL-PSGVFDRLTKL 133 (251)
T ss_dssp CTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTC
T ss_pred cccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCC-cCCCc-ChhHhccCCcc
Confidence 348999999987 5776665545678999999999875 5566544 467899999999998 56655 22345789999
Q ss_pred ceeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCC
Q 037562 100 RYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCP 166 (670)
Q Consensus 100 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~ 166 (670)
++|+++++ .++.++. .....+++|+.|.+.+. .++.++.. ....+++|+.|++.+++
T Consensus 134 ~~L~Ls~N-~l~~~~~-------~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 134 KELRLNTN-QLQSIPA-------GAFDKLTNLQTLSLSTN-QLQSVPHG-AFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CEEECCSS-CCCCCCT-------TTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSCC
T ss_pred cEEECcCC-cCCccCH-------HHcCcCcCCCEEECCCC-cCCccCHH-HHhCCCCCCEEEeeCCc
Confidence 99999988 4554432 12345789999999886 45555542 24568999999998865
No 156
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.36 E-value=5.1e-05 Score=84.20 Aligned_cols=307 Identities=11% Similarity=0.129 Sum_probs=209.3
Q ss_pred hhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh-
Q 037562 236 KLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTS- 314 (670)
Q Consensus 236 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~- 314 (670)
.+..+..+++.+...+.+-...|+..+..+........ .+..+++..+.+.+.+.. .. +.|+.++..++....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~ 85 (986)
T 2iw3_A 12 SIKVLEELFQKLSVATADNRHEIASEVASFLNGNIIEH---DVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNL 85 (986)
T ss_dssp HHHHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS---SCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTC
T ss_pred hHHHHHHHHhhccccchhHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCC
Confidence 44456667777765445566777778887765421111 111256777888877765 23 999999999995331
Q ss_pred -hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHh
Q 037562 315 -ENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFN 393 (670)
Q Consensus 315 -~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~ 393 (670)
...+.++ .+.++.++....+....|+..|..++..+...-+...-. ..+|.++..+......+.+..|+.++..
T Consensus 86 ~~~~e~~~-~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~kw~~k~~~l~~~~~ 160 (986)
T 2iw3_A 86 SPSVEPYI-VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIK----ALLPHLTNAIVETNKWQEKIAILAAFSA 160 (986)
T ss_dssp CTTTHHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHH----HHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCcccch-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHH----HHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 1222222 257899999999988999998888877776433322111 2589999999666677888899999999
Q ss_pred hhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCh-HHHHHHHHcCCHHHHHHhcCCCCccchhHHHH
Q 037562 394 FCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTN-DKVQAVIEAGVYPRLVELLGHSSSSVLTPALR 472 (670)
Q Consensus 394 l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~-~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~ 472 (670)
++...+.........++|.+...+.+..++|...+..++..++.--+ .... .+++.|+..+.+++. ...++.
T Consensus 161 ~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~-----~~~~~~~~~~~~p~~--~~~~~~ 233 (986)
T 2iw3_A 161 MVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE-----RFIPSLIQCIADPTE--VPETVH 233 (986)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG-----GGHHHHHHHHHCTTH--HHHHHH
T ss_pred HHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh-----hhHHHHHHHhcChhh--hHHHHH
Confidence 99865433344447888999999989999999999988888773211 1111 578999999988753 444555
Q ss_pred HHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc--CCHHHHHHHHhcCChHHHHHHhh-cCCh
Q 037562 473 TIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC--GNREQIQAVIDSGLIGPIVNLLQ-NTEF 549 (670)
Q Consensus 473 ~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~--~~~~~~~~l~~~~~i~~L~~ll~-~~~~ 549 (670)
.|+.-+.-.......+ +=.+|.|..-|... ...+++.++-++.|+|. .+|.....++- ..+|.+....+ -.++
T Consensus 234 ~l~~~tfv~~v~~~~l--~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~p 309 (986)
T 2iw3_A 234 LLGATTFVAEVTPATL--SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADP 309 (986)
T ss_dssp HHTTCCCCSCCCHHHH--HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSH
T ss_pred HhhcCeeEeeecchhH--HHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCH
Confidence 5544433222111111 12467777778877 88899999999999998 67776666664 57888887776 5689
Q ss_pred hHHHHHHHHHHHhcC
Q 037562 550 DTKKEAAWAISNATK 564 (670)
Q Consensus 550 ~v~~~a~~aL~~l~~ 564 (670)
++|..|..|+..+..
T Consensus 310 e~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 310 EAREVTLRALKTLRR 324 (986)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999998888888743
No 157
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.36 E-value=1.2e-06 Score=91.61 Aligned_cols=85 Identities=13% Similarity=0.140 Sum_probs=55.1
Q ss_pred ccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCC--Cccccccceeeecccccccccccchhhhccccc
Q 037562 22 MEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPS--STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRL 99 (670)
Q Consensus 22 ~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~--~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L 99 (670)
.+|++|+++++. ++.+.......+++|++|++++|.--...+.. +..+++|++|+++++. ++.+.+...+..+++|
T Consensus 79 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L 156 (455)
T 3v47_A 79 SSLIILKLDYNQ-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRF 156 (455)
T ss_dssp TTCCEEECTTCT-TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTC
T ss_pred ccCCEEeCCCCc-cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcc
Confidence 488899988875 55554333467888888888888532223332 5567788888888774 3443332335677788
Q ss_pred ceecccccc
Q 037562 100 RYMEIESCD 108 (670)
Q Consensus 100 ~~L~i~~c~ 108 (670)
++|+++++.
T Consensus 157 ~~L~L~~n~ 165 (455)
T 3v47_A 157 HVLDLTFNK 165 (455)
T ss_dssp CEEECTTCC
T ss_pred cEEeCCCCc
Confidence 888777664
No 158
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.35 E-value=4.2e-07 Score=99.30 Aligned_cols=152 Identities=15% Similarity=0.150 Sum_probs=92.8
Q ss_pred CCccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCcc--ccCCCccc------cccceeeecccccccccccch
Q 037562 20 NGMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLIN--LVPSSTSF------QNLTNLVVSHCKRLKIVLTSS 91 (670)
Q Consensus 20 ~~~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~--~~~~~~~~------~~L~~L~i~~c~~l~~l~~~~ 91 (670)
...+|++|.+++|.-...+|.. ...+++|+.|++++|..+.. +|...+.+ ++|++|++++|. ++.+ +.
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~i--p~ 322 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTF--PV 322 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSC--CC
T ss_pred ccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCcc--Cc
Confidence 3458999999999766666643 46789999999999875654 66555444 899999999884 4444 23
Q ss_pred --hhhcccccceeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCC-ccEEeEecCCCc
Q 037562 92 --IAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPS-LEILVVNYCPNM 168 (670)
Q Consensus 92 --~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~-L~~L~i~~C~~l 168 (670)
.+..+++|++|+++++.--..++ ....+++|+.|.+.++. ++.++.. ...+++ |+.|++.++. +
T Consensus 323 ~~~l~~l~~L~~L~L~~N~l~g~ip---------~~~~l~~L~~L~L~~N~-l~~lp~~--l~~l~~~L~~L~Ls~N~-l 389 (636)
T 4eco_A 323 ETSLQKMKKLGMLECLYNQLEGKLP---------AFGSEIKLASLNLAYNQ-ITEIPAN--FCGFTEQVENLSFAHNK-L 389 (636)
T ss_dssp HHHHTTCTTCCEEECCSCCCEEECC---------CCEEEEEESEEECCSSE-EEECCTT--SEEECTTCCEEECCSSC-C
T ss_pred hhhhccCCCCCEEeCcCCcCccchh---------hhCCCCCCCEEECCCCc-cccccHh--hhhhcccCcEEEccCCc-C
Confidence 57788899999988775221332 12335566666665542 3333332 334455 6666665554 3
Q ss_pred cccccCCcC--CCCccceeeee
Q 037562 169 KIFSGGELS--TPNLHKVQLSR 188 (670)
Q Consensus 169 ~~~p~~~~~--~~~L~~l~i~~ 188 (670)
..+|..... +++|+.|++++
T Consensus 390 ~~lp~~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 390 KYIPNIFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp SSCCSCCCTTCSSCEEEEECCS
T ss_pred cccchhhhhcccCccCEEECcC
Confidence 455543332 22555555543
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.35 E-value=2.9e-07 Score=80.31 Aligned_cols=17 Identities=35% Similarity=0.466 Sum_probs=9.3
Q ss_pred ccccccccccccccccc
Q 037562 128 FRELKELNLLQMQNLIS 144 (670)
Q Consensus 128 ~~~L~~L~l~~~~~l~~ 144 (670)
+|+|+.|.+++|++++.
T Consensus 138 ~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CTTCCEEEEESCTTCCC
T ss_pred CCCCCEEECCCCCCCCc
Confidence 45555555555555554
No 160
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.35 E-value=2.4e-06 Score=88.96 Aligned_cols=52 Identities=21% Similarity=0.121 Sum_probs=26.8
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeeccc
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHC 81 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c 81 (670)
+|++|+++++. ++.++ ...+++|++|++++|. +..++ ...+++|++|+++++
T Consensus 65 ~L~~L~Ls~n~-l~~~~---~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 65 GLTKLICTSNN-ITTLD---LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNCDTN 116 (457)
T ss_dssp TCSEEECCSSC-CSCCC---CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEEECCSS
T ss_pred CCCEEEccCCc-CCeEc---cccCCCCCEEECcCCC-Cceee--cCCCCcCCEEECCCC
Confidence 66666666653 44443 2445566666665553 33332 334455555555544
No 161
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.35 E-value=1.9e-06 Score=84.94 Aligned_cols=159 Identities=13% Similarity=0.085 Sum_probs=80.9
Q ss_pred CccccEEEeccCcCccccc---ccccccCCCCcEEEEecCCCCcccc-CCCccccccceeeecccccccc--cccchhhh
Q 037562 21 GMEVKISEAYNCYRLENIL---IEESSVMNNLVILCVHCCDHLINLV-PSSTSFQNLTNLVVSHCKRLKI--VLTSSIAK 94 (670)
Q Consensus 21 ~~~L~~L~i~~c~~l~~~~---~~~~~~~~~L~~L~i~~c~~l~~~~-~~~~~~~~L~~L~i~~c~~l~~--l~~~~~~~ 94 (670)
..+|++|+++++.--...+ ......+++|++|++++|. +..++ ..+..+++|++|+++++.-... +.......
T Consensus 116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 194 (310)
T 4glp_A 116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH 194 (310)
T ss_dssp CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT
T ss_pred CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh
Confidence 3477888887764221111 1112357788888887775 33443 3445677788888877753221 11112234
Q ss_pred cccccceeccccccccceecccccccccccccccccccccccccccccccc-ccCCc-ccCCCCccEEeEecCCCccccc
Q 037562 95 TLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISF-CSGNC-AFTFPSLEILVVNYCPNMKIFS 172 (670)
Q Consensus 95 ~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~-~~~~~~L~~L~i~~C~~l~~~p 172 (670)
.+++|++|++++|. ++.+.... ......+++|++|.++++. ++.. +.... ...+++|++|+++++ +++.+|
T Consensus 195 ~l~~L~~L~Ls~N~-l~~l~~~~----~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp 267 (310)
T 4glp_A 195 KFPAIQNLALRNTG-METPTGVC----AALAAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFA-GLEQVP 267 (310)
T ss_dssp SSCCCCSCBCCSSC-CCCHHHHH----HHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCC
T ss_pred cCCCCCEEECCCCC-CCchHHHH----HHHHhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCC-CCCchh
Confidence 67777777777763 33221100 0001234666666666543 3332 21100 111256666666655 345566
Q ss_pred cCCcCCCCccceeeeec
Q 037562 173 GGELSTPNLHKVQLSRW 189 (670)
Q Consensus 173 ~~~~~~~~L~~l~i~~~ 189 (670)
.... ++|+.|++++.
T Consensus 268 ~~~~--~~L~~L~Ls~N 282 (310)
T 4glp_A 268 KGLP--AKLRVLDLSSN 282 (310)
T ss_dssp SCCC--SCCSCEECCSC
T ss_pred hhhc--CCCCEEECCCC
Confidence 5442 56666666543
No 162
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.32 E-value=1.9e-06 Score=79.34 Aligned_cols=129 Identities=19% Similarity=0.196 Sum_probs=57.1
Q ss_pred CCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhcccccceeccccccccceeccccccccccc
Q 037562 46 MNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDE 124 (670)
Q Consensus 46 ~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~ 124 (670)
.++|++|+++++. +..+++. +..+++|++|+++++ +++.+ +...+..+++|++|+++++. ++.++. ..
T Consensus 27 ~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~-------~~ 95 (208)
T 2o6s_A 27 PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGN-KLQSL-PNGVFNKLTSLTYLNLSTNQ-LQSLPN-------GV 95 (208)
T ss_dssp CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCT-------TT
T ss_pred CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCC-ccCcc-ChhhcCCCCCcCEEECCCCc-CCccCH-------hH
Confidence 3455555555542 3333332 234555555555554 33332 11223445555555555542 222210 11
Q ss_pred cccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccC-CcCCCCccceeeee
Q 037562 125 VITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGG-ELSTPNLHKVQLSR 188 (670)
Q Consensus 125 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~-~~~~~~L~~l~i~~ 188 (670)
...+++|+.|.+.+. +++.++.. ....+++|+.|++.++ ++..+|.. ...+++|+.|++++
T Consensus 96 ~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 96 FDKLTQLKELALNTN-QLQSLPDG-VFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp TTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred hcCccCCCEEEcCCC-cCcccCHh-HhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecC
Confidence 123455555555543 23333321 1233555666666554 34444443 23355555555544
No 163
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.32 E-value=9.9e-07 Score=87.01 Aligned_cols=158 Identities=9% Similarity=-0.014 Sum_probs=94.4
Q ss_pred cccEEEeccCcCccccccccc--ccCCCCcEEEEecCCCCcccc----CCCccccccceeeecccccccccccchhhhcc
Q 037562 23 EVKISEAYNCYRLENILIEES--SVMNNLVILCVHCCDHLINLV----PSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTL 96 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~--~~~~~L~~L~i~~c~~l~~~~----~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l 96 (670)
+|++|.+++|. +........ ..+++|++|+++++.--...+ .....+++|++|++++|.- ..+ ++..+..+
T Consensus 92 ~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~-~~~~~~~l 168 (310)
T 4glp_A 92 RLKELTLEDLK-ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS-PAF-SCEQVRAF 168 (310)
T ss_dssp CCCEEEEESCC-CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS-CCC-CTTSCCCC
T ss_pred ceeEEEeeCCE-eccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc-chh-hHHHhccC
Confidence 58888888885 333322222 567888888888875322111 1123578888898888743 333 22345678
Q ss_pred cccceeccccccccce--eccccccccccccccccccccccccccccccccccCC--cccCCCCccEEeEecCCCccccc
Q 037562 97 VRLRYMEIESCDKITE--IVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGN--CAFTFPSLEILVVNYCPNMKIFS 172 (670)
Q Consensus 97 ~~L~~L~i~~c~~l~~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~--~~~~~~~L~~L~i~~C~~l~~~p 172 (670)
++|++|+++++.-... +.. ......+|+|++|.++++ +++.++... ....+++|++|+++++.--...|
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~------~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p 241 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMA------ALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLRATVN 241 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHT------TSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC
T ss_pred CCCCEEECCCCCCccchhhhH------HHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCCccch
Confidence 8889998888863211 110 011235788888888876 344332210 02356888889888875333336
Q ss_pred cCCcCC---CCccceeeeecc
Q 037562 173 GGELST---PNLHKVQLSRWD 190 (670)
Q Consensus 173 ~~~~~~---~~L~~l~i~~~~ 190 (670)
.....+ ++|++|++++..
T Consensus 242 ~~~~~~~~~~~L~~L~Ls~N~ 262 (310)
T 4glp_A 242 PSAPRCMWSSALNSLNLSFAG 262 (310)
T ss_dssp SCCSSCCCCTTCCCEECCSSC
T ss_pred hhHHhccCcCcCCEEECCCCC
Confidence 555443 688888886543
No 164
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.32 E-value=1.1e-07 Score=103.52 Aligned_cols=13 Identities=23% Similarity=0.401 Sum_probs=6.9
Q ss_pred CCCccEEeEecCC
Q 037562 154 FPSLEILVVNYCP 166 (670)
Q Consensus 154 ~~~L~~L~i~~C~ 166 (670)
+++|++|++.+|+
T Consensus 288 ~~~L~~L~L~~~~ 300 (594)
T 2p1m_B 288 CSRLTTLNLSYAT 300 (594)
T ss_dssp HTTCCEEECTTCC
T ss_pred hCCCCEEEccCCC
Confidence 3455555555554
No 165
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.32 E-value=1.4e-06 Score=93.81 Aligned_cols=159 Identities=12% Similarity=0.134 Sum_probs=88.0
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeeccccccccccc-chhhhcccccce
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLT-SSIAKTLVRLRY 101 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~-~~~~~~l~~L~~ 101 (670)
+|+.|.+.++. +..... ...+++|++|+++++.--...+.....+++|+.|+++++ +++.+.. +..+..+++|++
T Consensus 332 ~L~~L~l~~n~-~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~ 407 (562)
T 3a79_B 332 NIKMLSISDTP-FIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLET 407 (562)
T ss_dssp CCSEEEEESSC-CCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCE
T ss_pred cceEEEccCCC-cccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCE
Confidence 47777776664 222211 134566666666666432223444455666666666665 3333211 112345666666
Q ss_pred eccccccccceeccc--------------cccccccccccc-cccccccccccccccccccCCcccCCCCccEEeEecCC
Q 037562 102 MEIESCDKITEIVLV--------------DDVVAQDEVITF-RELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCP 166 (670)
Q Consensus 102 L~i~~c~~l~~~~~~--------------~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~ 166 (670)
|+++++.--..++.. ...........+ ++|+.|+++++ +++.++.+ ...+++|+.|++.++
T Consensus 408 L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~--~~~l~~L~~L~L~~N- 483 (562)
T 3a79_B 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKD--VTHLQALQELNVASN- 483 (562)
T ss_dssp EECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTT--TTSSCCCSEEECCSS-
T ss_pred EECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChh--hcCCCCCCEEECCCC-
Confidence 666655421112110 000000111123 57888888877 67776654 347889999999887
Q ss_pred CccccccC-CcCCCCccceeeeec
Q 037562 167 NMKIFSGG-ELSTPNLHKVQLSRW 189 (670)
Q Consensus 167 ~l~~~p~~-~~~~~~L~~l~i~~~ 189 (670)
+++.+|.. ...+++|+.|++++.
T Consensus 484 ~l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 484 QLKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp CCCCCCTTSTTTCTTCCCEECCSC
T ss_pred CCCCCCHHHHhcCCCCCEEEecCC
Confidence 47788877 566888888888654
No 166
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.30 E-value=7.4e-07 Score=88.00 Aligned_cols=151 Identities=17% Similarity=0.153 Sum_probs=101.8
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCcc--ccCCC--ccccccceeeecccccccccc--cchhhhcc
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLIN--LVPSS--TSFQNLTNLVVSHCKRLKIVL--TSSIAKTL 96 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~--~~~~~--~~~~~L~~L~i~~c~~l~~l~--~~~~~~~l 96 (670)
+|++|+++++. +..++......+++|++|+++++.-... ++... ..+++|++|++++| +++.+. +......+
T Consensus 150 ~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l 227 (312)
T 1wwl_A 150 GLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAAR 227 (312)
T ss_dssp TCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTT
T ss_pred CCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcC
Confidence 56666666553 4444433446789999999999874332 22222 67899999999998 344321 11223577
Q ss_pred cccceeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCc
Q 037562 97 VRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGEL 176 (670)
Q Consensus 97 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~ 176 (670)
++|++|+++++. +...+. ......+++|+.|.++++. ++.++.. . +++|+.|+++++ +++.+|. ..
T Consensus 228 ~~L~~L~Ls~N~-l~~~~~------~~~~~~l~~L~~L~Ls~N~-l~~ip~~--~--~~~L~~L~Ls~N-~l~~~p~-~~ 293 (312)
T 1wwl_A 228 VQLQGLDLSHNS-LRDAAG------APSCDWPSQLNSLNLSFTG-LKQVPKG--L--PAKLSVLDLSYN-RLDRNPS-PD 293 (312)
T ss_dssp CCCSEEECTTSC-CCSSCC------CSCCCCCTTCCEEECTTSC-CSSCCSS--C--CSEEEEEECCSS-CCCSCCC-TT
T ss_pred CCCCEEECCCCc-CCcccc------hhhhhhcCCCCEEECCCCc-cChhhhh--c--cCCceEEECCCC-CCCCChh-Hh
Confidence 999999999885 333210 0112346899999999874 5566542 1 289999999987 5777887 66
Q ss_pred CCCCccceeeeec
Q 037562 177 STPNLHKVQLSRW 189 (670)
Q Consensus 177 ~~~~L~~l~i~~~ 189 (670)
.+++|+.|++++.
T Consensus 294 ~l~~L~~L~L~~N 306 (312)
T 1wwl_A 294 ELPQVGNLSLKGN 306 (312)
T ss_dssp TSCEEEEEECTTC
T ss_pred hCCCCCEEeccCC
Confidence 7899999988653
No 167
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.29 E-value=2.9e-07 Score=91.14 Aligned_cols=147 Identities=10% Similarity=-0.028 Sum_probs=104.5
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCC-C-ccccccceeeecccccccccccchhhhcccccc
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPS-S-TSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLR 100 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~-~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~ 100 (670)
+|++|.++++ +++.++......+++|+.|+++++. +..+++. . ..+++|++|++++|. ++.+ +....+++|+
T Consensus 121 ~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~---~~~~~l~~L~ 194 (317)
T 3o53_A 121 GKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNF-IYDV---KGQVVFAKLK 194 (317)
T ss_dssp SCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSC-CCEE---ECCCCCTTCC
T ss_pred CCCEEECCCC-CCCCccchhhhccCCCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCc-Cccc---ccccccccCC
Confidence 5666766665 3555544344668999999999885 5554332 2 357899999999984 5554 3334589999
Q ss_pred eeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCc-cccccCCcCCC
Q 037562 101 YMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNM-KIFSGGELSTP 179 (670)
Q Consensus 101 ~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l-~~~p~~~~~~~ 179 (670)
+|+++++. ++.++. ....+++|+.|.++++ .++.++.. ...+++|+.|++.+++-- ..+|......+
T Consensus 195 ~L~Ls~N~-l~~l~~--------~~~~l~~L~~L~L~~N-~l~~l~~~--~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~ 262 (317)
T 3o53_A 195 TLDLSSNK-LAFMGP--------EFQSAAGVTWISLRNN-KLVLIEKA--LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (317)
T ss_dssp EEECCSSC-CCEECG--------GGGGGTTCSEEECTTS-CCCEECTT--CCCCTTCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred EEECCCCc-CCcchh--------hhcccCcccEEECcCC-cccchhhH--hhcCCCCCEEEccCCCccCcCHHHHHhccc
Confidence 99999884 444432 2346899999999987 67776653 556899999999998765 45666666677
Q ss_pred Cccceeee
Q 037562 180 NLHKVQLS 187 (670)
Q Consensus 180 ~L~~l~i~ 187 (670)
+|+.|++.
T Consensus 263 ~L~~l~l~ 270 (317)
T 3o53_A 263 RVQTVAKQ 270 (317)
T ss_dssp HHHHHHHH
T ss_pred cceEEECC
Confidence 88888775
No 168
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.28 E-value=1.1e-06 Score=92.33 Aligned_cols=153 Identities=15% Similarity=0.122 Sum_probs=91.2
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM 102 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L 102 (670)
+|+.|+++++ +++.++......+++|+.|++++|. +...++ +..+++|+.|++++| .++.+. ..++|++|
T Consensus 35 ~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~------~~~~L~~L 104 (487)
T 3oja_A 35 NVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQELL------VGPSIETL 104 (487)
T ss_dssp GCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSS-EEEEEE------ECTTCCEE
T ss_pred CccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCC-cCCCCC------CCCCcCEE
Confidence 7999999987 4666665445788999999998875 545444 677889999999888 344431 23666777
Q ss_pred ccccccccceecc-----------ccc---cccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCc
Q 037562 103 EIESCDKITEIVL-----------VDD---VVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNM 168 (670)
Q Consensus 103 ~i~~c~~l~~~~~-----------~~~---~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l 168 (670)
++++|. +..++. ... +..+.....+++|+.|.++++ .++..........+++|+.|++++|. +
T Consensus 105 ~L~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~-l 181 (487)
T 3oja_A 105 HAANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-I 181 (487)
T ss_dssp ECCSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-C
T ss_pred ECcCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCc-c
Confidence 666653 211110 000 000112234566666666654 23332222112246778888887775 5
Q ss_pred cccccCCcCCCCccceeeeec
Q 037562 169 KIFSGGELSTPNLHKVQLSRW 189 (670)
Q Consensus 169 ~~~p~~~~~~~~L~~l~i~~~ 189 (670)
..+|... .+++|+.|++++.
T Consensus 182 ~~~~~~~-~l~~L~~L~Ls~N 201 (487)
T 3oja_A 182 YDVKGQV-VFAKLKTLDLSSN 201 (487)
T ss_dssp CEEECCC-CCTTCCEEECCSS
T ss_pred ccccccc-cCCCCCEEECCCC
Confidence 5555433 3777888877654
No 169
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.28 E-value=3.9e-06 Score=80.27 Aligned_cols=121 Identities=15% Similarity=0.116 Sum_probs=92.3
Q ss_pred ccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccce
Q 037562 22 MEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY 101 (670)
Q Consensus 22 ~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~ 101 (670)
.+|+.|.++++ +++.++. ...+++|+.|+++++. +..++.... ++|+.|++++| +++.+ +.+..+++|++
T Consensus 63 ~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~L~~N~-l~~l~~~~~--~~L~~L~L~~N-~l~~~---~~l~~l~~L~~ 132 (263)
T 1xeu_A 63 TNLKELHLSHN-QISDLSP--LKDLTKLEELSVNRNR-LKNLNGIPS--ACLSRLFLDNN-ELRDT---DSLIHLKNLEI 132 (263)
T ss_dssp TTCCEEECCSS-CCCCCGG--GTTCSSCCEEECCSSC-CSCCTTCCC--SSCCEEECCSS-CCSBS---GGGTTCTTCCE
T ss_pred CCCCEEECCCC-ccCCChh--hccCCCCCEEECCCCc-cCCcCcccc--CcccEEEccCC-ccCCC---hhhcCcccccE
Confidence 48999999987 5777665 4689999999999984 666654333 89999999998 56665 45778999999
Q ss_pred eccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCC
Q 037562 102 MEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCP 166 (670)
Q Consensus 102 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~ 166 (670)
|+++++. ++.+. ....+++|+.|.++++ .++.+ .....+++|+.|++.+++
T Consensus 133 L~Ls~N~-i~~~~---------~l~~l~~L~~L~L~~N-~i~~~---~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 133 LSIRNNK-LKSIV---------MLGFLSKLEVLDLHGN-EITNT---GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp EECTTSC-CCBCG---------GGGGCTTCCEEECTTS-CCCBC---TTSTTCCCCCEEEEEEEE
T ss_pred EECCCCc-CCCCh---------HHccCCCCCEEECCCC-cCcch---HHhccCCCCCEEeCCCCc
Confidence 9999875 44431 2346889999999886 34444 235678999999999875
No 170
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.28 E-value=3.2e-06 Score=91.02 Aligned_cols=50 Identities=16% Similarity=0.044 Sum_probs=25.7
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeeccc
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHC 81 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c 81 (670)
+|+.|.+.+| +++.++. .+++|++|++++|. +..+|. .+++|++|++++|
T Consensus 62 ~L~~L~L~~N-~l~~lp~----~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 62 HITTLVIPDN-NLTSLPA----LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp TCSEEEECSC-CCSCCCC----CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECSC
T ss_pred CCcEEEecCC-CCCCCCC----cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcCC
Confidence 5555555555 3444432 34556666665553 444443 3455555555554
No 171
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.28 E-value=5.9e-07 Score=80.24 Aligned_cols=79 Identities=10% Similarity=0.122 Sum_probs=39.3
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM 102 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L 102 (670)
+|+.|.+.++ +++.++. .....++|+.|+++++. +..+ ..+..+++|+.|+++++ .++.+ ++.....+++|++|
T Consensus 20 ~L~~L~l~~n-~l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 20 RDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNN-RICRI-GEGLDQALPDLTEL 93 (176)
T ss_dssp SCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSS-CCCEE-CSCHHHHCTTCCEE
T ss_pred CceEEEeeCC-CCchhHH-hhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCC-ccccc-CcchhhcCCCCCEE
Confidence 5666666665 3444432 11233366666666653 4444 34445556666666655 23333 11223455566666
Q ss_pred ccccc
Q 037562 103 EIESC 107 (670)
Q Consensus 103 ~i~~c 107 (670)
+++++
T Consensus 94 ~L~~N 98 (176)
T 1a9n_A 94 ILTNN 98 (176)
T ss_dssp ECCSC
T ss_pred ECCCC
Confidence 55554
No 172
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.27 E-value=3.8e-06 Score=78.58 Aligned_cols=147 Identities=18% Similarity=0.163 Sum_probs=103.5
Q ss_pred ccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccc-cCCCccccccceeeecccccccccccchhhhccccccee
Q 037562 24 VKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINL-VPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM 102 (670)
Q Consensus 24 L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~-~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L 102 (670)
...++.++ .+++.+|.. ..++|+.|+++++. +..+ +..+..+++|++|+++++. ++.+ +...+..+++|++|
T Consensus 21 ~~~v~c~~-~~l~~ip~~---~~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~-l~~i-~~~~~~~l~~L~~L 93 (229)
T 3e6j_A 21 GTTVDCRS-KRHASVPAG---IPTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQ-LGAL-PVGVFDSLTQLTVL 93 (229)
T ss_dssp TTEEECTT-SCCSSCCSC---CCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCC-CTTTTTTCTTCCEE
T ss_pred CCEeEccC-CCcCccCCC---CCCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCC-CCCc-ChhhcccCCCcCEE
Confidence 34454433 346676653 35899999999875 5555 4445678999999999884 5554 23345789999999
Q ss_pred ccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccC-CcCCCCc
Q 037562 103 EIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGG-ELSTPNL 181 (670)
Q Consensus 103 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~-~~~~~~L 181 (670)
+++++ .++.++. .....+++|+.|.+.+. +++.++.. ...+++|+.|+++++ ++..+|.. ...+++|
T Consensus 94 ~Ls~N-~l~~l~~-------~~~~~l~~L~~L~Ls~N-~l~~lp~~--~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 161 (229)
T 3e6j_A 94 DLGTN-QLTVLPS-------AVFDRLVHLKELFMCCN-KLTELPRG--IERLTHLTHLALDQN-QLKSIPHGAFDRLSSL 161 (229)
T ss_dssp ECCSS-CCCCCCT-------TTTTTCTTCCEEECCSS-CCCSCCTT--GGGCTTCSEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred ECCCC-cCCccCh-------hHhCcchhhCeEeccCC-cccccCcc--cccCCCCCEEECCCC-cCCccCHHHHhCCCCC
Confidence 99987 4554431 12245889999999875 46666553 467899999999987 67778764 4568899
Q ss_pred cceeeeec
Q 037562 182 HKVQLSRW 189 (670)
Q Consensus 182 ~~l~i~~~ 189 (670)
+.|++++.
T Consensus 162 ~~L~l~~N 169 (229)
T 3e6j_A 162 THAYLFGN 169 (229)
T ss_dssp CEEECTTS
T ss_pred CEEEeeCC
Confidence 99988653
No 173
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.27 E-value=2.4e-06 Score=96.67 Aligned_cols=133 Identities=12% Similarity=0.086 Sum_probs=75.6
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccc-cCCCccccccceeeecccccccccccchhhhcccccce
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINL-VPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY 101 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~-~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~ 101 (670)
+|+.|+++++ .++.+.......+++|+.|++++|.....+ +..+..+++|+.|++++|. +..+ .+..+..+++|++
T Consensus 25 ~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~-~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 25 TTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFL-HPDAFQGLFHLFE 101 (844)
T ss_dssp TCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEE-CTTSSCSCSSCCC
T ss_pred CcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-Cccc-CHhHccCCcccCE
Confidence 7777777766 355555444566777788888777655555 3445667777777777763 3333 1344567777777
Q ss_pred eccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecC
Q 037562 102 MEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYC 165 (670)
Q Consensus 102 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C 165 (670)
|++++|.--..++. ......+++|+.|.++++. ++.+..+.....+++|+.|++.++
T Consensus 102 L~Ls~n~l~~~~~~------~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 102 LRLYFCGLSDAVLK------DGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp EECTTCCCSSCCST------TCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESS
T ss_pred eeCcCCCCCccccc------CccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCC
Confidence 77777642221211 0112346666666666543 222222112345566666666654
No 174
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.25 E-value=3.3e-06 Score=78.93 Aligned_cols=130 Identities=21% Similarity=0.155 Sum_probs=97.6
Q ss_pred ccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhcccccc
Q 037562 22 MEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLR 100 (670)
Q Consensus 22 ~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~ 100 (670)
.+|+.|.++++ +++.+.......+++|+.|+++++. +..+++. +..+++|+.|+++++ +++.+ ++..+..+++|+
T Consensus 40 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l-~~~~~~~l~~L~ 115 (229)
T 3e6j_A 40 TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN-QLTVL-PSAVFDRLVHLK 115 (229)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCC
T ss_pred CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC-cCCcc-ChhHhCcchhhC
Confidence 38999999987 4666654445678999999999985 6677655 367899999999998 56665 223457899999
Q ss_pred eeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCC
Q 037562 101 YMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCP 166 (670)
Q Consensus 101 ~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~ 166 (670)
+|+++++. +..++ .....+++|+.|.+.+. +++.++.. ....+++|+.|++.+.|
T Consensus 116 ~L~Ls~N~-l~~lp--------~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 116 ELFMCCNK-LTELP--------RGIERLTHLTHLALDQN-QLKSIPHG-AFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp EEECCSSC-CCSCC--------TTGGGCTTCSEEECCSS-CCCCCCTT-TTTTCTTCCEEECTTSC
T ss_pred eEeccCCc-ccccC--------cccccCCCCCEEECCCC-cCCccCHH-HHhCCCCCCEEEeeCCC
Confidence 99998874 54443 12356899999999985 67766653 34568999999998754
No 175
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.25 E-value=2.4e-06 Score=82.59 Aligned_cols=135 Identities=15% Similarity=0.148 Sum_probs=88.9
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccC-CCccccccceeeecccccccccccchhhhcccccce
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVP-SSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY 101 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~-~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~ 101 (670)
+|++|+++++ +++.++......+++|++|+++++ .+..+++ .+..+++|++|+++++. ++.+ ++..+..+++|++
T Consensus 29 ~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~ 104 (276)
T 2z62_A 29 STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP-IQSL-ALGAFSGLSSLQK 104 (276)
T ss_dssp TCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC-CCEE-CTTTTTTCTTCCE
T ss_pred CccEEECCCC-cccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc-cCcc-ChhhhcCCccccE
Confidence 7888988877 466666544567888999999888 4656654 45678889999998874 4443 2234567889999
Q ss_pred eccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCcccc
Q 037562 102 MEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIF 171 (670)
Q Consensus 102 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~ 171 (670)
|++.++. +..+. ......+++|++|.+.++. ++.+........+++|+.|++.+|. +..+
T Consensus 105 L~l~~n~-l~~~~-------~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~ 164 (276)
T 2z62_A 105 LVAVETN-LASLE-------NFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK-IQSI 164 (276)
T ss_dssp EECTTSC-CCCST-------TCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC-CCEE
T ss_pred EECCCCC-ccccC-------chhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCC-CCcC
Confidence 9888774 32221 1123457888888888753 3332211234567888888888874 3434
No 176
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.24 E-value=2.5e-06 Score=93.58 Aligned_cols=133 Identities=15% Similarity=0.171 Sum_probs=90.3
Q ss_pred ccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceecccccccccc
Q 037562 44 SVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQD 123 (670)
Q Consensus 44 ~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 123 (670)
..+++|+.++++.+.--...+.....+++|+.|+++++.....+. +..+..+++|++|++++|. ++.++. .
T Consensus 442 ~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~-~~~~~~l~~L~~L~Ls~N~-L~~l~~-------~ 512 (635)
T 4g8a_A 442 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL-PDIFTELRNLTFLDLSQCQ-LEQLSP-------T 512 (635)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE-CSCCTTCTTCCEEECTTSC-CCEECT-------T
T ss_pred ccccccccccccccccccccccccccchhhhhhhhhhcccccccC-chhhhhccccCEEECCCCc-cCCcCh-------H
Confidence 345666666666554222223334567889999999987666543 3456788999999999984 655532 2
Q ss_pred ccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccc-cCCcCC-CCccceeeee
Q 037562 124 EVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFS-GGELST-PNLHKVQLSR 188 (670)
Q Consensus 124 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p-~~~~~~-~~L~~l~i~~ 188 (670)
....+++|+.|.|++. +++.+... ....+++|+.|+++++. +..++ ..+..+ ++|+.|++++
T Consensus 513 ~f~~l~~L~~L~Ls~N-~l~~l~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 513 AFNSLSSLQVLNMSHN-NFFSLDTF-PYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQ 576 (635)
T ss_dssp TTTTCTTCCEEECTTS-CCCBCCCG-GGTTCTTCCEEECTTSC-CCBCCSSCTTCCCTTCCEEECTT
T ss_pred HHcCCCCCCEEECCCC-cCCCCChh-HHhCCCCCCEEECCCCc-CCCCCHHHHHhhhCcCCEEEeeC
Confidence 2345889999999986 56666543 24568999999999874 55554 444455 6899999865
No 177
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.23 E-value=4e-06 Score=84.19 Aligned_cols=161 Identities=16% Similarity=0.114 Sum_probs=95.5
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhcccccce
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY 101 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~ 101 (670)
++++|++++. +++.++......+++|++|+++++.-++.++.. +..+++|.++.+.++.+++.+. +..+..+++|++
T Consensus 31 ~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~~L~~ 108 (350)
T 4ay9_X 31 NAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQY 108 (350)
T ss_dssp TCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC-TTSBCCCTTCCE
T ss_pred CCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC-chhhhhcccccc
Confidence 7888888875 588877655567888999999888766666543 2456777777777788887763 234567888888
Q ss_pred eccccccccceeccccc------------c---ccccccccc----cccccccccccccccccccCCcccCCCCccEEeE
Q 037562 102 MEIESCDKITEIVLVDD------------V---VAQDEVITF----RELKELNLLQMQNLISFCSGNCAFTFPSLEILVV 162 (670)
Q Consensus 102 L~i~~c~~l~~~~~~~~------------~---~~~~~~~~~----~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i 162 (670)
|++.++. ++.++.... . ........| ..|+.|.+.+ .+++.++.+ .+..++|++|.+
T Consensus 109 L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~--~f~~~~L~~l~l 184 (350)
T 4ay9_X 109 LLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNS--AFNGTQLDELNL 184 (350)
T ss_dssp EEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTT--SSTTEEEEEEEC
T ss_pred ccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChh--hccccchhHHhh
Confidence 8887663 222211000 0 000000011 1233444433 234444332 234456777777
Q ss_pred ecCCCccccccCC-cCCCCccceeeeec
Q 037562 163 NYCPNMKIFSGGE-LSTPNLHKVQLSRW 189 (670)
Q Consensus 163 ~~C~~l~~~p~~~-~~~~~L~~l~i~~~ 189 (670)
.++..++.+|.+. ..+++|+.|++++.
T Consensus 185 ~~~n~l~~i~~~~f~~l~~L~~LdLs~N 212 (350)
T 4ay9_X 185 SDNNNLEELPNDVFHGASGPVILDISRT 212 (350)
T ss_dssp TTCTTCCCCCTTTTTTEECCSEEECTTS
T ss_pred ccCCcccCCCHHHhccCcccchhhcCCC
Confidence 7777777777653 45677777777543
No 178
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.23 E-value=7.4e-06 Score=75.35 Aligned_cols=130 Identities=18% Similarity=0.194 Sum_probs=96.0
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhcccccce
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY 101 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~ 101 (670)
+|++|.++++ +++.++......+++|++|+++++ .+..+++. +..+++|++|+++++ +++.+ ++..+..+++|++
T Consensus 29 ~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 29 QTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSL-PNGVFDKLTQLKE 104 (208)
T ss_dssp TCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCE
T ss_pred CCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCcc-CHhHhcCccCCCE
Confidence 8999999988 577766554567899999999987 56677665 367899999999998 45554 2234578999999
Q ss_pred eccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCC
Q 037562 102 MEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCP 166 (670)
Q Consensus 102 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~ 166 (670)
|+++++. ++.++. .....+++|+.|.+.+. .++.++.. ....+++|+.|++.+++
T Consensus 105 L~L~~N~-l~~~~~-------~~~~~l~~L~~L~l~~N-~l~~~~~~-~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 105 LALNTNQ-LQSLPD-------GVFDKLTQLKDLRLYQN-QLKSVPDG-VFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp EECCSSC-CCCCCT-------TTTTTCTTCCEEECCSS-CCSCCCTT-TTTTCTTCCEEECCSCC
T ss_pred EEcCCCc-CcccCH-------hHhccCCcCCEEECCCC-ccceeCHH-HhccCCCccEEEecCCC
Confidence 9998874 444321 12345889999999986 46655542 24568999999999874
No 179
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.21 E-value=1.3e-06 Score=73.54 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=84.8
Q ss_pred hcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhh
Q 037562 211 KKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFL 290 (670)
Q Consensus 211 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll 290 (670)
..+...+++....++..+.......+-..++.|++.++++++.++..|+++|.++.. ...++.|+.++
T Consensus 15 ~~l~~~L~~~~~~vR~~A~~~L~~~~~~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~------------~~a~~~L~~~L 82 (131)
T 1te4_A 15 VPRGSHMADENKWVRRDVSTALSRMGDEAFEPLLESLSNEDWRIRGAAAWIIGNFQD------------ERAVEPLIKLL 82 (131)
T ss_dssp ------CCSSCCCSSSSCCSSTTSCSSTTHHHHHHGGGCSCHHHHHHHHHHHGGGCS------------HHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCchHHHHHHHHHcCCCHHHHHHHHHHHHhcCC------------HHHHHHHHHHH
Confidence 344445555555555444432222222347899999999999999999999987732 12488899999
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 037562 291 MRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNV 351 (670)
Q Consensus 291 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 351 (670)
++++ +.||..|+++|+.+.. + ..++.|+.+++++++.++..|+++|+++
T Consensus 83 ~d~~-~~VR~~A~~aL~~~~~--~---------~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 83 EDDS-GFVRSGAARSLEQIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp HHCC-THHHHHHHHHHHHHCS--H---------HHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred cCCC-HHHHHHHHHHHHHhCc--H---------HHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 9888 8999999999999964 2 3578999999999999999999998764
No 180
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.21 E-value=9.2e-07 Score=96.14 Aligned_cols=82 Identities=9% Similarity=-0.038 Sum_probs=42.8
Q ss_pred CccccEEEeccCcCcccccccccccCCCCcEEEEecCCCC--------------------------ccccCCCccccccc
Q 037562 21 GMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHL--------------------------INLVPSSTSFQNLT 74 (670)
Q Consensus 21 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l--------------------------~~~~~~~~~~~~L~ 74 (670)
..+|++|++.+|. +..++.. ...+++|++|.++++... ..++.....+++|+
T Consensus 219 ~~~L~~L~L~~~~-~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 219 CRSLVSVKVGDFE-ILELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR 296 (592)
T ss_dssp CTTCCEEECSSCB-GGGGHHH-HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCC
T ss_pred CCCCcEEeccCcc-HHHHHHH-HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCc
Confidence 3478888888864 3333321 244566666666543221 12222233456677
Q ss_pred eeeecccccccccccchhhhcccccceeccc
Q 037562 75 NLVVSHCKRLKIVLTSSIAKTLVRLRYMEIE 105 (670)
Q Consensus 75 ~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~ 105 (670)
+|++++|. +........+..+++|++|++.
T Consensus 297 ~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 297 KLDLLYAL-LETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp EEEETTCC-CCHHHHHHHHTTCTTCCEEEEE
T ss_pred EEecCCCc-CCHHHHHHHHHhCcCCCEEecc
Confidence 77777765 4332111224556666666664
No 181
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.20 E-value=5.1e-06 Score=83.41 Aligned_cols=140 Identities=13% Similarity=0.147 Sum_probs=92.9
Q ss_pred CcccccccccccCCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhcccccceeccccccccce
Q 037562 34 RLENILIEESSVMNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITE 112 (670)
Q Consensus 34 ~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~ 112 (670)
+|+++|.. -.+++++|++++. +++.+++. +..+++|++|+++++.-++.+ +...+.++++|+++.+.++.++..
T Consensus 20 ~Lt~iP~~---l~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i-~~~~f~~L~~l~~~l~~~~N~l~~ 94 (350)
T 4ay9_X 20 KVTEIPSD---LPRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVI-EADVFSNLPKLHEIRIEKANNLLY 94 (350)
T ss_dssp TCCSCCTT---CCTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEE-CTTSBCSCTTCCEEEEEEETTCCE
T ss_pred CCCccCcC---cCCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCcc-ChhHhhcchhhhhhhcccCCcccc
Confidence 57888753 3578999999986 58888875 577999999999999766654 223456788999888888888887
Q ss_pred eccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCc-C-CCCccceeee
Q 037562 113 IVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGEL-S-TPNLHKVQLS 187 (670)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~-~-~~~L~~l~i~ 187 (670)
+.. .....+++|+.|.+.++ +++.++.. .......+..|.+.++.++..+|.... . ...++.|+++
T Consensus 95 l~~-------~~f~~l~~L~~L~l~~n-~l~~~~~~-~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~ 162 (350)
T 4ay9_X 95 INP-------EAFQNLPNLQYLLISNT-GIKHLPDV-HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162 (350)
T ss_dssp ECT-------TSBCCCTTCCEEEEEEE-CCSSCCCC-TTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred cCc-------hhhhhcccccccccccc-ccccCCch-hhcccchhhhhhhccccccccccccchhhcchhhhhhccc
Confidence 742 12234677888877765 34444332 122344566677777777776665422 1 2345555554
No 182
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.20 E-value=4.2e-07 Score=98.80 Aligned_cols=36 Identities=17% Similarity=0.318 Sum_probs=17.5
Q ss_pred CCCccEEeEecCCCcc--ccccCCcCCCCccceeeeecc
Q 037562 154 FPSLEILVVNYCPNMK--IFSGGELSTPNLHKVQLSRWD 190 (670)
Q Consensus 154 ~~~L~~L~i~~C~~l~--~~p~~~~~~~~L~~l~i~~~~ 190 (670)
+|+|++|++++|+ +. .++.....+++|++|+++++.
T Consensus 487 ~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 487 CPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 4556666666665 32 122222234566666555444
No 183
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.19 E-value=5.8e-06 Score=88.16 Aligned_cols=153 Identities=11% Similarity=0.106 Sum_probs=86.2
Q ss_pred ccccEEEeccCcCcccccccccccC---CCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccc
Q 037562 22 MEVKISEAYNCYRLENILIEESSVM---NNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVR 98 (670)
Q Consensus 22 ~~L~~L~i~~c~~l~~~~~~~~~~~---~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~ 98 (670)
.+|+.+++.++.- .++......+ ++|+.|+++++. +...+. ...+++|++|++++|. +.... +..+..+++
T Consensus 276 ~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~ 349 (520)
T 2z7x_B 276 KALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTR-MVHMLC-PSKISPFLHLDFSNNL-LTDTV-FENCGHLTE 349 (520)
T ss_dssp CEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSC-CCCCCC-CSSCCCCCEEECCSSC-CCTTT-TTTCCCCSS
T ss_pred ceeEeccccccce--ecchhhhhcccccCceeEEEcCCCc-cccccc-hhhCCcccEEEeECCc-cChhh-hhhhccCCC
Confidence 3777777776653 4442222222 679999999986 333321 1578999999999995 44322 345678999
Q ss_pred cceeccccccccceeccccccccccccccccccccccccccccccccccCCcccCC----------------------CC
Q 037562 99 LRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTF----------------------PS 156 (670)
Q Consensus 99 L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~----------------------~~ 156 (670)
|++|++++|. +..+.. .+.....+++|+.|+++++.--..++.+ ....+ ++
T Consensus 350 L~~L~L~~N~-l~~l~~-----~~~~~~~l~~L~~L~Ls~N~l~~~l~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~ 422 (520)
T 2z7x_B 350 LETLILQMNQ-LKELSK-----IAEMTTQMKSLQQLDISQNSVSYDEKKG-DCSWTKSLLSLNMSSNILTDTIFRCLPPR 422 (520)
T ss_dssp CCEEECCSSC-CCBHHH-----HHHHHTTCTTCCEEECCSSCCBCCGGGC-SCCCCTTCCEEECCSSCCCGGGGGSCCTT
T ss_pred CCEEEccCCc-cCcccc-----chHHHhhCCCCCEEECCCCcCCcccccc-hhccCccCCEEECcCCCCCcchhhhhccc
Confidence 9999998875 222110 0001123455555555543322112211 01122 46
Q ss_pred ccEEeEecCCCccccccCCcCCCCccceeeee
Q 037562 157 LEILVVNYCPNMKIFSGGELSTPNLHKVQLSR 188 (670)
Q Consensus 157 L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~ 188 (670)
|+.|++++| +++.+|.+...+++|+.|++++
T Consensus 423 L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~ 453 (520)
T 2z7x_B 423 IKVLDLHSN-KIKSIPKQVVKLEALQELNVAS 453 (520)
T ss_dssp CCEEECCSS-CCCCCCGGGGGCTTCCEEECCS
T ss_pred CCEEECCCC-cccccchhhhcCCCCCEEECCC
Confidence 666666665 4556666555666677666654
No 184
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.17 E-value=6.7e-06 Score=87.38 Aligned_cols=70 Identities=17% Similarity=0.173 Sum_probs=32.4
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM 102 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L 102 (670)
+|++|.++++ +++.++ ..+++|+.|+++++ .+..+|. +. ++|++|+++++ +++.+ +. .+++|+.|
T Consensus 81 ~L~~L~Ls~N-~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~-l~--~~L~~L~Ls~N-~l~~l---p~--~l~~L~~L 145 (571)
T 3cvr_A 81 QITVLEITQN-ALISLP----ELPASLEYLDACDN-RLSTLPE-LP--ASLKHLDVDNN-QLTML---PE--LPALLEYI 145 (571)
T ss_dssp TCSEEECCSS-CCSCCC----CCCTTCCEEECCSS-CCSCCCC-CC--TTCCEEECCSS-CCSCC---CC--CCTTCCEE
T ss_pred CCCEEECcCC-CCcccc----cccCCCCEEEccCC-CCCCcch-hh--cCCCEEECCCC-cCCCC---CC--cCccccEE
Confidence 4555555544 244333 23455555555554 2333333 11 15555555554 23332 11 45566666
Q ss_pred ccccc
Q 037562 103 EIESC 107 (670)
Q Consensus 103 ~i~~c 107 (670)
+++++
T Consensus 146 ~Ls~N 150 (571)
T 3cvr_A 146 NADNN 150 (571)
T ss_dssp ECCSS
T ss_pred eCCCC
Confidence 66554
No 185
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.17 E-value=0.00011 Score=84.33 Aligned_cols=388 Identities=10% Similarity=0.083 Sum_probs=217.0
Q ss_pred hccHHHHHHHhcC--CChHHHHHHHHHHHHHhcCCC---------CCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHH
Q 037562 237 LEILPAMVDGVWS--DDNSLQLEATTLFINLLSFDR---------SPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWA 305 (670)
Q Consensus 237 ~~~i~~l~~~l~~--~~~~~~~~a~~~L~~l~~~~~---------~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~ 305 (670)
.+....+++.+.+ .+..+|..|+-.|.+.....- ++..+..++. .++..+.+++ ..+|..++.+
T Consensus 34 p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~----~ll~~l~~~~-~~ir~~l~~~ 108 (960)
T 1wa5_C 34 DGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKK----EIVPLMISLP-NNLQVQIGEA 108 (960)
T ss_dssp TTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHH----HHHHHHHHSC-HHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHH----HHHHHHHhCC-HHHHHHHHHH
Confidence 3455667777653 457899999999998865310 1112233333 3455554556 7999999999
Q ss_pred HHHHcCCC-hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC------chhHHHH---HhcCChHHHHHH-
Q 037562 306 LTNIASGT-SENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDS------PRCRDLV---LSQGALIPLLAE- 374 (670)
Q Consensus 306 L~~l~~~~-~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~------~~~~~~i---~~~~~i~~Ll~~- 374 (670)
++.++..+ +.. -.+.++.+++.+.+++...+..++.++..++... ++.+..+ .. ...++++.+
T Consensus 109 ia~ia~~d~p~~-----Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~-~~~~~ll~~~ 182 (960)
T 1wa5_C 109 ISSIADSDFPDR-----WPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLD-VFTAPFLNLL 182 (960)
T ss_dssp HHHHHHHHSTTT-----CTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHhhCccc-----hhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHH-HHHHHHHHHH
Confidence 99998721 111 1467899999999888888999999999998532 1122111 11 123434443
Q ss_pred ------hcccCCh--------hHHHHHHHHHHhhhcCC-CCCChhhhhhhHHHHHHhhccC------C---------hhH
Q 037562 375 ------LNENANL--------SMLRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLIRSN------D---------EEV 424 (670)
Q Consensus 375 ------l~~~~~~--------~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~~------~---------~~v 424 (670)
+.+.... .+...++.++..+.... +..........++.+..++... + ..+
T Consensus 183 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~v 262 (960)
T 1wa5_C 183 KTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKV 262 (960)
T ss_dssp HHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHH
Confidence 3222111 23334666666665433 2111112244556666666421 1 246
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcC-----CCCccchhHHHHHHHHhhcCCchhhHHHHh-CCChHHHH
Q 037562 425 LTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLG-----HSSSSVLTPALRTIRNIVKGDDFQTQCIIN-CGALPYFL 498 (670)
Q Consensus 425 ~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~~~~L~ 498 (670)
+..++.++..+....++....... .+++.+...+. ..++.++..|+..+..++.... ... ++. ...++.++
T Consensus 263 k~~~~~~l~~l~~~~~~~f~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~-~~~-~~~~~~~l~~li 339 (960)
T 1wa5_C 263 KSSIQELVQLYTTRYEDVFGPMIN-EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPK-YFE-IFNNESAMNNIT 339 (960)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHH-HHG-GGCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHh-HHH-HHcCchHHHHHH
Confidence 778888888877555544333332 45555566554 2345688889988888875322 111 111 12222222
Q ss_pred -----Hhhcc----------------------CCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh------
Q 037562 499 -----DMLVH----------------------NHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ------ 545 (670)
Q Consensus 499 -----~~l~~----------------------~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~------ 545 (670)
..+.- +.....|..|..++..++...++.. .. .+++.+...+.
T Consensus 340 ~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v---~~-~~l~~i~~~l~~~~~~~ 415 (960)
T 1wa5_C 340 EQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLV---TN-IFLAHMKGFVDQYMSDP 415 (960)
T ss_dssp HHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHH---HH-HHHHHHHHHHHHHHC--
T ss_pred HHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhH---HH-HHHHHHHHHHHHhccCc
Confidence 22210 1022467778888888876443221 11 13334444444
Q ss_pred cCChhHHHHHHHHHHHhcCCCC-HH----------HHHHHHHcCCcHHHHhhccCC---ChHHHHHHHHHHHHHHHhhhh
Q 037562 546 NTEFDTKKEAAWAISNATKFGT-HE----------QIKHLVREGCVKPLCDLLLCA---DPKIVTVCLEGLENILKVGVA 611 (670)
Q Consensus 546 ~~~~~v~~~a~~aL~~l~~~~~-~~----------~~~~l~~~~~i~~L~~ll~~~---~~~v~~~a~~~l~~l~~~~~~ 611 (670)
+.+...+..|..+++.++..+. .. ....++...+++ .+.++ ++-+|..++++++++...-.
T Consensus 416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p----~l~~~~~~~p~vr~~a~~~lg~~~~~~~- 490 (960)
T 1wa5_C 416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP----DLTSNNIPHIILRVDAIKYIYTFRNQLT- 490 (960)
T ss_dssp --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH----HHHCSSCSCHHHHHHHHHHHHHTGGGSC-
T ss_pred chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHH----HhcCCCCCCceehHHHHHHHHHHHhhCC-
Confidence 4567899999999999975421 00 111221111222 23445 88999999999998765321
Q ss_pred hhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 037562 612 EMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYWSS 663 (670)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~~~ 663 (670)
.+.+ ...++.+.....+++..|+..|..++.++...
T Consensus 491 --------------~~~l--~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 491 --------------KAQL--IELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp --------------HHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred --------------HHHH--HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 0111 11245555555677899999999999998764
No 186
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.16 E-value=3.7e-06 Score=95.18 Aligned_cols=159 Identities=16% Similarity=0.109 Sum_probs=96.0
Q ss_pred CccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccc-cCCCccccccceeeecccccccccccchhhhccccc
Q 037562 21 GMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINL-VPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRL 99 (670)
Q Consensus 21 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~-~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L 99 (670)
..+|+.|++++|.....++......+++|+.|+++++. +..+ |..+..+++|++|++++|.--........+..+++|
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L 125 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence 34899999999977777755445788999999999886 4454 556778899999999998432222222236788999
Q ss_pred ceeccccccccceeccccccccccccccccccccccccccccccccccCCcccCC--CCccEEeEecCCCccccccCCcC
Q 037562 100 RYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTF--PSLEILVVNYCPNMKIFSGGELS 177 (670)
Q Consensus 100 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~--~~L~~L~i~~C~~l~~~p~~~~~ 177 (670)
++|+++++.- ..+. .......+++|++|.+.++. ++..... ....+ ++|+.|.+.+++--...|.....
T Consensus 126 ~~L~Ls~N~l-~~~~------~~~~~~~L~~L~~L~Ls~N~-i~~~~~~-~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~ 196 (844)
T 3j0a_A 126 TRLDLSKNQI-RSLY------LHPSFGKLNSLKSIDFSSNQ-IFLVCEH-ELEPLQGKTLSFFSLAANSLYSRVSVDWGK 196 (844)
T ss_dssp CEEEEESCCC-CCCC------CCGGGGTCSSCCEEEEESSC-CCCCCSG-GGHHHHHCSSCCCEECCSBSCCCCCCCCCS
T ss_pred CEEECCCCcc-cccc------cchhHhhCCCCCEEECCCCc-CCeeCHH-HcccccCCccceEECCCCccccccccchhh
Confidence 9999988752 2221 01123457777777777642 2222111 11112 56666666666543333433322
Q ss_pred CCC------ccceeeeec
Q 037562 178 TPN------LHKVQLSRW 189 (670)
Q Consensus 178 ~~~------L~~l~i~~~ 189 (670)
+++ |+.|++++.
T Consensus 197 ~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 197 CMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp SSCTTTTCCBSEEBCSSC
T ss_pred cCCccccCceeEEecCCC
Confidence 222 566665543
No 187
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.15 E-value=7.9e-06 Score=84.98 Aligned_cols=56 Identities=16% Similarity=0.058 Sum_probs=24.9
Q ss_pred ccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccc
Q 037562 44 SVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESC 107 (670)
Q Consensus 44 ~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 107 (670)
..+++|++|+++++. +..+|.. +++|++|++++| +++.+ +.+..+++|++|++++|
T Consensus 150 ~~l~~L~~L~l~~N~-l~~lp~~---~~~L~~L~L~~n-~l~~l---~~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNS-LKKLPDL---PPSLEFIAAGNN-QLEEL---PELQNLPFLTAIYADNN 205 (454)
T ss_dssp TTCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSS-CCSSC---CCCTTCTTCCEEECCSS
T ss_pred CCCCCCCEEECCCCc-CcccCCC---cccccEEECcCC-cCCcC---ccccCCCCCCEEECCCC
Confidence 344455555554442 3333221 234555555544 23332 22345555555555554
No 188
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.13 E-value=4.8e-06 Score=91.28 Aligned_cols=126 Identities=21% Similarity=0.175 Sum_probs=54.2
Q ss_pred CCcEEEEecCCCCccccC-CCccccccceeeecccccccccccchhhhcccccceeccccccccceeccccccccccccc
Q 037562 48 NLVILCVHCCDHLINLVP-SSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVI 126 (670)
Q Consensus 48 ~L~~L~i~~c~~l~~~~~-~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~ 126 (670)
++++|++++. .++.+++ .+..+++|++|++++| +++.+. +..+.++++|++|+++++. ++.++. ....
T Consensus 53 ~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~-~~~f~~L~~L~~L~Ls~N~-l~~l~~-------~~f~ 121 (635)
T 4g8a_A 53 STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQTIE-DGAYQSLSHLSTLILTGNP-IQSLAL-------GAFS 121 (635)
T ss_dssp TCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTC-CCCEEC-TTTTTTCTTCCEEECTTCC-CCEECG-------GGGT
T ss_pred CCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCC-cCCCcC-hhHhcCCCCCCEEEccCCc-CCCCCH-------HHhc
Confidence 4555555543 3444443 2344555555555555 233331 1223445555555555542 333321 0112
Q ss_pred cccccccccccccccccccccCCcccCCCCccEEeEecCCCccc--cccCCcCCCCccceeee
Q 037562 127 TFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKI--FSGGELSTPNLHKVQLS 187 (670)
Q Consensus 127 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~--~p~~~~~~~~L~~l~i~ 187 (670)
.+++|++|.+.++ +++.++.. ....+++|+.|++.++. ++. .|.....+++|++|+++
T Consensus 122 ~L~~L~~L~Ls~N-~l~~l~~~-~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~ 181 (635)
T 4g8a_A 122 GLSSLQKLVAVET-NLASLENF-PIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLS 181 (635)
T ss_dssp TCTTCCEEECTTS-CCCCSTTC-CCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECC
T ss_pred CCCCCCEEECCCC-cCCCCChh-hhhcCcccCeeccccCc-cccCCCchhhccchhhhhhccc
Confidence 3445555555544 23333321 12344555555555442 221 23333334555555543
No 189
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.11 E-value=1e-06 Score=76.93 Aligned_cols=39 Identities=18% Similarity=0.272 Sum_probs=20.9
Q ss_pred ccccccccccccccccccCCcccCCCCccEEeEecCCCcc
Q 037562 130 ELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMK 169 (670)
Q Consensus 130 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~ 169 (670)
+|++|+|++|++++.-... ....+|+|++|++++||+++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGII-ALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HCCEEEEESCTTCCHHHHH-HGGGCTTCCEEEEESCTTCC
T ss_pred CCCEEEcCCCCcCCHHHHH-HHhcCCCCCEEECCCCCCCC
Confidence 4555555555555543221 11235667777777776655
No 190
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.11 E-value=2.2e-06 Score=74.04 Aligned_cols=107 Identities=21% Similarity=0.200 Sum_probs=73.2
Q ss_pred CccccEEEeccCcCcccccccccccCCCCcEEEEecCCCCcc-ccCCCccccccceeeecccccccccccchhhhccccc
Q 037562 21 GMEVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLIN-LVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRL 99 (670)
Q Consensus 21 ~~~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~-~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L 99 (670)
..+|+.|.+.+| +++.+ .....+++|+.|+++++. +.. ++.....+++|++|++++|. ++.+..+..+..+++|
T Consensus 41 l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L 115 (149)
T 2je0_A 41 FEELEFLSTINV-GLTSI--ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENL 115 (149)
T ss_dssp CTTCCEEECTTS-CCCCC--TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTC
T ss_pred cCCCcEEECcCC-CCCCc--hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCC
Confidence 348999999988 57666 335678999999999986 444 44444558999999999985 5554223557789999
Q ss_pred ceeccccccccceecccccccccccccccccccccccc
Q 037562 100 RYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLL 137 (670)
Q Consensus 100 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 137 (670)
++|++++|+ +..++. ........+|+|+.|+++
T Consensus 116 ~~L~l~~N~-l~~~~~----~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 116 KSLDLFNCE-VTNLND----YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTCG-GGGSTT----HHHHHHHHCTTCCEETTB
T ss_pred CEEeCcCCc-ccchHH----HHHHHHHHCCCcccccCC
Confidence 999999984 433321 000122346677776654
No 191
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.11 E-value=1.3e-05 Score=88.51 Aligned_cols=34 Identities=15% Similarity=0.088 Sum_probs=15.0
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecC
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCC 57 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c 57 (670)
.|+.|.++++. +..++......+++|+.|+++++
T Consensus 382 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N 415 (680)
T 1ziw_A 382 PLHILNLTKNK-ISKIESDAFSWLGHLEVLDLGLN 415 (680)
T ss_dssp CCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred cCceEECCCCC-CCeEChhhhhCCCCCCEEeCCCC
Confidence 45555555542 33332222234445555555444
No 192
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.11 E-value=0.00051 Score=78.87 Aligned_cols=382 Identities=10% Similarity=0.037 Sum_probs=211.5
Q ss_pred chhhhHHHHhhcchhhhhhccccCCCccccchhhhhhccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHc
Q 037562 201 LNTTIKYLYLKKLGEFLQSQRSRISTPVLSLNLQSKLEILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQS 280 (670)
Q Consensus 201 ~~~~i~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 280 (670)
.+..+|..+.-.+++.+...-... .....-+-+.....=..+++.+.++...++..++.++..++..+-...+ .
T Consensus 49 ~~~~vR~~A~i~lkn~i~~~w~~~-~~~~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~~W-----p 122 (960)
T 1wa5_C 49 LPLSTRLAGALFFKNFIKRKWVDE-NGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDRW-----P 122 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSBCS-SSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC-----T
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCc-ccCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCccch-----h
Confidence 355678888878887776543211 0000000011111123456666656688999999999998775312212 2
Q ss_pred CCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC------hhhHHHH---HhCCChHHHHH-------hhCCCCH------
Q 037562 281 GVVPRFVEFLMRQDYPQLQFKAAWALTNIASGT------SENTKVV---IDHGAVPIFVK-------LLASPSV------ 338 (670)
Q Consensus 281 g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~------~~~~~~i---~~~~~i~~L~~-------lL~~~~~------ 338 (670)
+.++.+++.+++++ +..+..++.++..++... ++.+..+ +. ...+.+++ .+.++..
T Consensus 123 ~ll~~L~~~l~s~~-~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~-~~~~~ll~~~~~~~~~l~~~~~~~~~~~ 200 (960)
T 1wa5_C 123 TLLSDLASRLSNDD-MVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLD-VFTAPFLNLLKTVDEQITANENNKASLN 200 (960)
T ss_dssp THHHHHHTTCCSSC-TTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCCC--CHHHH
T ss_pred HHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 46888999998877 688899999999988622 1222211 11 12333333 2444321
Q ss_pred ---HHHHHHHHHHHHhhC-CCchh-HHHHHhcCChHHHHHHhccc-----CC---------hhHHHHHHHHHHhhhcCCC
Q 037562 339 ---DVRKQTVWALGNVAG-DSPRC-RDLVLSQGALIPLLAELNEN-----AN---------LSMLRTATWTLFNFCRGKP 399 (670)
Q Consensus 339 ---~v~~~a~~~L~~l~~-~~~~~-~~~i~~~~~i~~Ll~~l~~~-----~~---------~~~~~~a~~~L~~l~~~~~ 399 (670)
.+...++.+++++.. +.+.. .+.+. ..++.+.+.+... .+ ..+++.++.++..+....+
T Consensus 201 ~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~--~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~ 278 (960)
T 1wa5_C 201 ILFDVLLVLIKLYYDFNCQDIPEFFEDNIQ--VGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYE 278 (960)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCHHHHHTHH--HHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHhhccchHHHHHHHH--HHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 223346667766653 22321 11111 1233444444221 11 1466778888887775432
Q ss_pred CCChhhhhhhHHHHHHhhc-----cCChhHHHHHHHHHHHhccCChHHHH-----HHHHcCCH-HHHHHhcC--------
Q 037562 400 QPPFNQVRPALPVLAQLIR-----SNDEEVLTDACWALSYLSDGTNDKVQ-----AVIEAGVY-PRLVELLG-------- 460 (670)
Q Consensus 400 ~~~~~~~~~~i~~L~~lL~-----~~~~~v~~~al~~L~~l~~~~~~~~~-----~~~~~~~i-~~L~~lL~-------- 460 (670)
..-......+++.....+. ..++.++..++..+..++..... .. ..+. .++ ..+++.+.
T Consensus 279 ~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~-~~~~~~~~~l~-~li~~~i~~~m~~~~~d~e~ 356 (960)
T 1wa5_C 279 DVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKY-FEIFNNESAMN-NITEQIILPNVTLREEDVEL 356 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHH-HGGGCSHHHHH-HHHHHTHHHHHSCCGGGTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhH-HHHHcCchHHH-HHHHHHhHHhcCCCHHHHHH
Confidence 2111223445555555554 34578888899888887754221 11 1111 122 22333332
Q ss_pred ---------------CCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhc------cCCchhHHHHHHHHHHH
Q 037562 461 ---------------HSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLV------HNHEESIKKEVSWIISN 519 (670)
Q Consensus 461 ---------------~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~------~~~~~~v~~~a~~~L~~ 519 (670)
+...+.|..|..+|..++...++. ++. .+++.+.+.+. +. +...|+.|..+++.
T Consensus 357 w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~---v~~-~~l~~i~~~l~~~~~~~~~-~w~~reaal~alga 431 (960)
T 1wa5_C 357 FEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVL---VTN-IFLAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTA 431 (960)
T ss_dssp TTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHH---HHH-HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchh---HHH-HHHHHHHHHHHHhccCcch-hHHHHHHHHHHHHH
Confidence 112257788888888888754321 111 13444445554 34 67889999999999
Q ss_pred hhcCC--HH----------HHHHHHhcCChHHHHHHhhcC---ChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHH
Q 037562 520 ITCGN--RE----------QIQAVIDSGLIGPIVNLLQNT---EFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLC 584 (670)
Q Consensus 520 l~~~~--~~----------~~~~l~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~ 584 (670)
++.+. .. ....++...+ +..+.++ ++.+|..|+++++.++..-.++.... +++.++
T Consensus 432 ia~~~~~~~~~~~~~~~~~~l~~~l~~~v----~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~-----~l~~l~ 502 (960)
T 1wa5_C 432 LAINGNITNAGVSSTNNLLNVVDFFTKEI----APDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQLIE-----LMPILA 502 (960)
T ss_dssp HHBSSCCBTTBCCCBCTTCCHHHHHHHHT----HHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHHHH-----HHHHHH
T ss_pred HHHHhccccCCcccccccccHHHHHHHHh----HHHhcCCCCCCceehHHHHHHHHHHHhhCCHHHHHH-----HHHHHH
Confidence 97531 10 1222221112 3334545 78999999999999988644443333 577888
Q ss_pred hhccCCChHHHHHHHHHHHHHHHh
Q 037562 585 DLLLCADPKIVTVCLEGLENILKV 608 (670)
Q Consensus 585 ~ll~~~~~~v~~~a~~~l~~l~~~ 608 (670)
..+.++++.|+..|+.++.+++..
T Consensus 503 ~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 503 TFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp HHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCCChhHHHHHHHHHHHHHhc
Confidence 888888899999999999998864
No 193
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.11 E-value=1.5e-05 Score=88.18 Aligned_cols=57 Identities=18% Similarity=0.150 Sum_probs=32.3
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccC-CCccccccceeeeccc
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVP-SSTSFQNLTNLVVSHC 81 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~-~~~~~~~L~~L~i~~c 81 (670)
+|++|+++++ +++.++......+++|++|+++++. +..+++ .+..+++|++|++++|
T Consensus 74 ~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n 131 (680)
T 1ziw_A 74 MLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHN 131 (680)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSS
T ss_pred CcCEEECCCC-ccCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCC
Confidence 6777777666 4555554334556666666666653 334432 3345556666666555
No 194
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.09 E-value=1.3e-05 Score=74.23 Aligned_cols=138 Identities=12% Similarity=0.138 Sum_probs=97.2
Q ss_pred CcccccccccccCCCCcEEEEecCCCCccccC-CCccccccceeeecccccccccccchhhhcccccceeccccccccce
Q 037562 34 RLENILIEESSVMNNLVILCVHCCDHLINLVP-SSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITE 112 (670)
Q Consensus 34 ~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~-~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~ 112 (670)
+++.+|.. ..++|+.|++.++. +..+++ .+..+++|+.|+++++. ++.+. +..+..+++|++|+++++. ++.
T Consensus 22 ~l~~iP~~---l~~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~ 94 (220)
T 2v9t_B 22 GLTEIPTN---LPETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQ-ISELA-PDAFQGLRSLNSLVLYGNK-ITE 94 (220)
T ss_dssp CCSSCCSS---CCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSC-CCEEC-TTTTTTCSSCCEEECCSSC-CCC
T ss_pred CcCcCCCc---cCcCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCc-CCCcC-HHHhhCCcCCCEEECCCCc-CCc
Confidence 46666643 34789999998874 666665 45678899999999883 44442 3456789999999998874 444
Q ss_pred eccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccC-CcCCCCccceeeee
Q 037562 113 IVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGG-ELSTPNLHKVQLSR 188 (670)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~-~~~~~~L~~l~i~~ 188 (670)
++. .....+++|+.|.+.+. .++.+... ....+++|+.|++.++. ++.+|.+ ...+++|+.|++++
T Consensus 95 l~~-------~~f~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 95 LPK-------SLFEGLFSLQLLLLNAN-KINCLRVD-AFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CCT-------TTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred cCH-------hHccCCCCCCEEECCCC-CCCEeCHH-HcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCC
Confidence 431 11235788999999876 35555432 34568999999999874 6667654 55688999998864
No 195
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.08 E-value=8.5e-05 Score=70.66 Aligned_cols=187 Identities=11% Similarity=0.080 Sum_probs=138.4
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHH
Q 037562 410 LPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCII 489 (670)
Q Consensus 410 i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~ 489 (670)
+..++.-|.+.+...+..++..|..+...+......++..+++..|+......+..++..++.++.++..+.+.....+-
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs 199 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC
Confidence 34456666678888899999999986556677888899999999999999999999999999999999985444333233
Q ss_pred hCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHh--------c--CChHHHHHHhh---cCChhHHHHHH
Q 037562 490 NCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVID--------S--GLIGPIVNLLQ---NTEFDTKKEAA 556 (670)
Q Consensus 490 ~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~--------~--~~i~~L~~ll~---~~~~~v~~~a~ 556 (670)
...++..+..++.+. +..|.+.|...|-.++..++.....+.+ . ..+..++.+|. +.|.+++.+|.
T Consensus 200 ~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 200 HSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp CHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 556889999999977 8999999999999998765544333322 1 24889999997 67899999999
Q ss_pred HHHHHhcCCCC-HH----HHHHHHHcCCcHHHHhhccCC--ChHHHHH
Q 037562 557 WAISNATKFGT-HE----QIKHLVREGCVKPLCDLLLCA--DPKIVTV 597 (670)
Q Consensus 557 ~aL~~l~~~~~-~~----~~~~l~~~~~i~~L~~ll~~~--~~~v~~~ 597 (670)
..|..+..... .+ ....+-+.|.-..+.+.++.. +++++.+
T Consensus 279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 98888776543 33 222333455445566666554 6666554
No 196
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.07 E-value=2.9e-07 Score=84.07 Aligned_cols=146 Identities=16% Similarity=0.162 Sum_probs=100.3
Q ss_pred cccEEEeccC-cCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccce
Q 037562 23 EVKISEAYNC-YRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY 101 (670)
Q Consensus 23 ~L~~L~i~~c-~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~ 101 (670)
.|..+.+.+. +.++.++.. ...+++|+.|+++++. +..++ ....+++|+.|++++| .++.+ +.....+++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n~-l~~l~-~~~~l~~L~~L~l~~n-~l~~l--~~~~~~~~~L~~ 97 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRN-LIKKI--ENLDAVADTLEE 97 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEEE-ESCCC-CHHHHTTCCEEEEEEE-EECSC--SSHHHHHHHCSE
T ss_pred chheeEeccccCcHhhhhHH-HhcCCCCCEEECCCCC-Ccccc-ccccCCCCCEEECCCC-Ccccc--cchhhcCCcCCE
Confidence 6777777654 457776653 4678999999998874 66665 6677899999999988 45554 244567799999
Q ss_pred eccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccC-------
Q 037562 102 MEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGG------- 174 (670)
Q Consensus 102 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~------- 174 (670)
|+++++. +..++ ....+++|+.|.+.++. ++.++.......+++|+.|++.+++--...|..
T Consensus 98 L~L~~N~-l~~l~---------~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~ 166 (198)
T 1ds9_A 98 LWISYNQ-IASLS---------GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYR 166 (198)
T ss_dssp EEEEEEE-CCCHH---------HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHH
T ss_pred EECcCCc-CCcCC---------ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHH
Confidence 9999883 44432 23458899999998763 444332112456899999999988632233321
Q ss_pred ---CcCCCCcccee
Q 037562 175 ---ELSTPNLHKVQ 185 (670)
Q Consensus 175 ---~~~~~~L~~l~ 185 (670)
...+|+|+.|+
T Consensus 167 ~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 167 IEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHCSSCSEEC
T ss_pred HHHHHhCCCcEEEC
Confidence 34578888875
No 197
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.07 E-value=1.8e-05 Score=85.07 Aligned_cols=156 Identities=12% Similarity=0.046 Sum_probs=88.1
Q ss_pred cccEEEeccCcCcc-cccccccc---cCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccc
Q 037562 23 EVKISEAYNCYRLE-NILIEESS---VMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVR 98 (670)
Q Consensus 23 ~L~~L~i~~c~~l~-~~~~~~~~---~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~ 98 (670)
+|+.|.+.+...-. .++..... ...+|++|++.++.- ...+. ...+++|++|+++++. ++... +..+..+++
T Consensus 303 ~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~-~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~ 378 (562)
T 3a79_B 303 ALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF-IHMVC-PPSPSSFTFLNFTQNV-FTDSV-FQGCSTLKR 378 (562)
T ss_dssp SCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC-CCCCC-CSSCCCCCEEECCSSC-CCTTT-TTTCCSCSS
T ss_pred cchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc-ccccC-ccCCCCceEEECCCCc-cccch-hhhhcccCC
Confidence 56666665543221 22311111 236799999999863 22221 1568899999999984 33321 345678999
Q ss_pred cceeccccccccceeccccccccccccccccccccccccccccccccccC--------------------CcccCC-CCc
Q 037562 99 LRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSG--------------------NCAFTF-PSL 157 (670)
Q Consensus 99 L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~--------------------~~~~~~-~~L 157 (670)
|++|+++++. ++.+... +.....+++|+.|+++++.--..++.+ ..+..+ ++|
T Consensus 379 L~~L~L~~N~-l~~~~~~-----~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L 452 (562)
T 3a79_B 379 LQTLILQRNG-LKNFFKV-----ALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKV 452 (562)
T ss_dssp CCEEECCSSC-CCBTTHH-----HHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTC
T ss_pred CCEEECCCCC-cCCcccc-----hhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcC
Confidence 9999998873 3332100 001122344444444433211101110 011223 578
Q ss_pred cEEeEecCCCccccccCCcCCCCccceeeeec
Q 037562 158 EILVVNYCPNMKIFSGGELSTPNLHKVQLSRW 189 (670)
Q Consensus 158 ~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~~ 189 (670)
+.|++++| +++.+|.+...+++|+.|++++.
T Consensus 453 ~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N 483 (562)
T 3a79_B 453 KVLDLHNN-RIMSIPKDVTHLQALQELNVASN 483 (562)
T ss_dssp SEEECCSS-CCCCCCTTTTSSCCCSEEECCSS
T ss_pred CEEECCCC-cCcccChhhcCCCCCCEEECCCC
Confidence 88888887 67788877777888888887653
No 198
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.06 E-value=2e-06 Score=87.80 Aligned_cols=84 Identities=10% Similarity=-0.031 Sum_probs=38.2
Q ss_pred cccEEEeccCcCcccccc----cccccCCCCcEEEEecC--CCCccc-cCC-------Cccccccceeeecccccccccc
Q 037562 23 EVKISEAYNCYRLENILI----EESSVMNNLVILCVHCC--DHLINL-VPS-------STSFQNLTNLVVSHCKRLKIVL 88 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~----~~~~~~~~L~~L~i~~c--~~l~~~-~~~-------~~~~~~L~~L~i~~c~~l~~l~ 88 (670)
+|++|++++|. +..... .....+++|++|++++| ..+... |.. ...+++|++|++++|. +....
T Consensus 33 ~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~ 110 (386)
T 2ca6_A 33 SVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FGPTA 110 (386)
T ss_dssp CCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-CCTTT
T ss_pred CccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-CCHHH
Confidence 66667666662 332211 01234566666666665 222211 111 1234566666666553 22100
Q ss_pred ---cchhhhcccccceecccccc
Q 037562 89 ---TSSIAKTLVRLRYMEIESCD 108 (670)
Q Consensus 89 ---~~~~~~~l~~L~~L~i~~c~ 108 (670)
.+..+..+++|++|++++|.
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSC
T ss_pred HHHHHHHHHhCCCCCEEECcCCC
Confidence 01233455666666665553
No 199
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.06 E-value=6.1e-05 Score=71.65 Aligned_cols=195 Identities=13% Similarity=0.135 Sum_probs=143.4
Q ss_pred HHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHH-
Q 037562 454 RLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVI- 532 (670)
Q Consensus 454 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~- 532 (670)
.++..|.+++.+.+..++.-|..+...+...+..++..+++..|+.+.... +...+..+..++.++... .....-++
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~-v~Gm~gvvs 199 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLF-VDGMLGVVA 199 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhc-cccccchhC
Confidence 344555566777888899999986656778888999999999999999998 999999999999999664 33343444
Q ss_pred hcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHH-------c---CCcHHHHhhcc---CCChHHHHHHH
Q 037562 533 DSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVR-------E---GCVKPLCDLLL---CADPKIVTVCL 599 (670)
Q Consensus 533 ~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~-------~---~~i~~L~~ll~---~~~~~v~~~a~ 599 (670)
...+|..+..++.+.+..|.+.|...|..++... +.....+.+ . .-++.|+.+++ +.|.+++..++
T Consensus 200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~s-e~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYS-ENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccC-cccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 4557888888888888999999999999998763 222222221 1 13778888886 78999999999
Q ss_pred HHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCC--CHHHHHHHHHHHHH
Q 037562 600 EGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHD--DNGISEKAVEILET 659 (670)
Q Consensus 600 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~--~~~v~~~a~~~l~~ 659 (670)
..+..++...+... ....+...+++.|.-..+...+... ++++++. ..+.+.
T Consensus 279 tLIN~lL~~apd~d-------~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q-l~iyE~ 332 (339)
T 3dad_A 279 TLINKTLAALPDQD-------SFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ-LVLYEN 332 (339)
T ss_dssp HHHHHHHHHCSSHH-------HHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH-HHHHHH
T ss_pred HHHHHHHhcCCChh-------HHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH-HHHHHH
Confidence 99999988754322 1224677888888777788766554 6776654 334433
No 200
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.06 E-value=9.4e-06 Score=72.32 Aligned_cols=133 Identities=13% Similarity=0.072 Sum_probs=95.7
Q ss_pred ccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceecccccccccc
Q 037562 44 SVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQD 123 (670)
Q Consensus 44 ~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~ 123 (670)
..+++|+.|++++| .+..++.....+++|+.|+++++ .++.+ +.+..+++|++|+++++. +..++. .
T Consensus 16 ~~~~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~~-------~ 82 (176)
T 1a9n_A 16 TNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDN-EIRKL---DGFPLLRRLKTLLVNNNR-ICRIGE-------G 82 (176)
T ss_dssp ECTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSS-CCCEE---CCCCCCSSCCEEECCSSC-CCEECS-------C
T ss_pred CCcCCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCC-CCCcc---cccccCCCCCEEECCCCc-ccccCc-------c
Confidence 35778999999998 46666433233459999999998 45555 466789999999999885 544431 1
Q ss_pred ccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccC----CcCCCCccceeeeeccC
Q 037562 124 EVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGG----ELSTPNLHKVQLSRWDG 191 (670)
Q Consensus 124 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~----~~~~~~L~~l~i~~~~~ 191 (670)
....+|+|+.|.++++. ++.++.-.....+|+|+.|++.+++ +..+|.. ...+|+|+.|+++++..
T Consensus 83 ~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 83 LDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred hhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 12458999999999863 4555431134578999999999986 4566764 55689999998876654
No 201
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.05 E-value=3e-05 Score=71.82 Aligned_cols=147 Identities=12% Similarity=0.100 Sum_probs=100.7
Q ss_pred cEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCC--Cccccccceeeecccccccccccchhhhccccccee
Q 037562 25 KISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPS--STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM 102 (670)
Q Consensus 25 ~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~--~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L 102 (670)
+.+++++. +++.+|.. ..+.++.|+++++. +..+++. +..+++|+.|+++++. ++.+. +..+..+++|++|
T Consensus 14 ~~l~~s~n-~l~~iP~~---~~~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~-~~~~~~l~~L~~L 86 (220)
T 2v70_A 14 TTVDCSNQ-KLNKIPEH---IPQYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNK-ITDIE-EGAFEGASGVNEI 86 (220)
T ss_dssp TEEECCSS-CCSSCCSC---CCTTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSC-CCEEC-TTTTTTCTTCCEE
T ss_pred CEeEeCCC-CcccCccC---CCCCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCc-CCEEC-HHHhCCCCCCCEE
Confidence 45665554 46666642 34578899998874 6666432 4678999999998874 55542 2356789999999
Q ss_pred ccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCcccc-ccCCcCCCCc
Q 037562 103 EIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIF-SGGELSTPNL 181 (670)
Q Consensus 103 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~-p~~~~~~~~L 181 (670)
+++++. ++.++. .....+++|++|.+++.. ++.+... ....+++|+.|++.++ +++.+ |..+..+++|
T Consensus 87 ~Ls~N~-l~~~~~-------~~~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 155 (220)
T 2v70_A 87 LLTSNR-LENVQH-------KMFKGLESLKTLMLRSNR-ITCVGND-SFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSL 155 (220)
T ss_dssp ECCSSC-CCCCCG-------GGGTTCSSCCEEECTTSC-CCCBCTT-SSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTC
T ss_pred ECCCCc-cCccCH-------hHhcCCcCCCEEECCCCc-CCeECHh-HcCCCccCCEEECCCC-cCCEECHHHhcCCCCC
Confidence 998875 333321 123457889999998764 5554332 3456899999999987 46666 6666678999
Q ss_pred cceeeeec
Q 037562 182 HKVQLSRW 189 (670)
Q Consensus 182 ~~l~i~~~ 189 (670)
+.|++++.
T Consensus 156 ~~L~L~~N 163 (220)
T 2v70_A 156 STLNLLAN 163 (220)
T ss_dssp CEEECCSC
T ss_pred CEEEecCc
Confidence 99988643
No 202
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.00 E-value=0.00066 Score=75.46 Aligned_cols=299 Identities=15% Similarity=0.179 Sum_probs=200.1
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc---hhHHHH
Q 037562 286 FVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSP---RCRDLV 362 (670)
Q Consensus 286 L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~---~~~~~i 362 (670)
+++-+...+ ..-+..++..+..+..+..... .+..+++..+.+.+.+.... +.|+.++..++.... .....+
T Consensus 19 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~ 93 (986)
T 2iw3_A 19 LFQKLSVAT-ADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI 93 (986)
T ss_dssp HHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred HHhhccccc-hhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch
Confidence 344444433 2334556666666654221111 11125677777777764434 899999999984332 222233
Q ss_pred HhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccC-ChhHHHHHHHHHHHhccCChH
Q 037562 363 LSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSN-DEEVLTDACWALSYLSDGTND 441 (670)
Q Consensus 363 ~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~al~~L~~l~~~~~~ 441 (670)
+ +.++.++... .+....|+..|..+...+...-+. .....++|.|+..+.+. ....+..|+.++..++...+.
T Consensus 94 ~--~~~~~~~~~~-~dk~~~v~~aa~~~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~ 167 (986)
T 2iw3_A 94 V--QLVPAICTNA-GNKDKEIQSVASETLISIVNAVNP---VAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKD 167 (986)
T ss_dssp H--TTHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSCG---GGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHH
T ss_pred H--HHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHH
Confidence 3 4678888887 566678888887777777765322 22377889999988765 588999999999999976555
Q ss_pred HHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcC--CchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHH
Q 037562 442 KVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKG--DDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISN 519 (670)
Q Consensus 442 ~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~ 519 (670)
+....+. .++|.+...+.+..++|...|..++..+|.- +.+.. ..+|.|++.+.++ +. .-++...|+.
T Consensus 168 ~~~~~~~-~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~------~~~~~~~~~~~~p-~~--~~~~~~~l~~ 237 (986)
T 2iw3_A 168 QVALRMP-ELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIE------RFIPSLIQCIADP-TE--VPETVHLLGA 237 (986)
T ss_dssp HHHHHHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTG------GGHHHHHHHHHCT-TH--HHHHHHHHTT
T ss_pred HHHHhcc-chhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchh------hhHHHHHHHhcCh-hh--hHHHHHHhhc
Confidence 5443333 6889999999999999999999999998862 22222 4789999999877 32 2333444443
Q ss_pred hhcC---CHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCC-CCHHHHHHHHHcCCcHHHHhhcc-CCChHH
Q 037562 520 ITCG---NREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKF-GTHEQIKHLVREGCVKPLCDLLL-CADPKI 594 (670)
Q Consensus 520 l~~~---~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~-~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v 594 (670)
-+.- ..... .+ ++|.|.+-|......+++.++-.+.||+.- .+|.....|+. ..+|.+....+ -.+|++
T Consensus 238 ~tfv~~v~~~~l-~~----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~ 311 (986)
T 2iw3_A 238 TTFVAEVTPATL-SI----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPEA 311 (986)
T ss_dssp CCCCSCCCHHHH-HH----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHH
T ss_pred CeeEeeecchhH-HH----HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHH
Confidence 3321 11111 11 467777788888899999999999999874 35666666554 36777777664 478999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 037562 595 VTVCLEGLENILKVGVA 611 (670)
Q Consensus 595 ~~~a~~~l~~l~~~~~~ 611 (670)
|..+.+++..+.+.+..
T Consensus 312 r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 312 REVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 99999999998877654
No 203
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.98 E-value=3.9e-05 Score=71.04 Aligned_cols=130 Identities=14% Similarity=0.168 Sum_probs=94.3
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccc-cCCCccccccceeeecccccccccccchhhhcccccce
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINL-VPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY 101 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~-~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~ 101 (670)
+|+.|.+.+. +++.++......+++|+.|+++++. +..+ +..+..+++|++|+++++ +++.+ +...+..+++|++
T Consensus 33 ~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l-~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 33 TITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGN-KITEL-PKSLFEGLFSLQL 108 (220)
T ss_dssp TCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSS-CCCCC-CTTTTTTCTTCCE
T ss_pred CCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCC-cCCcc-CHhHccCCCCCCE
Confidence 7999999887 5777776555778999999999885 5565 455677899999999987 45554 2334578999999
Q ss_pred eccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCC
Q 037562 102 MEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCP 166 (670)
Q Consensus 102 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~ 166 (670)
|+++++. ++.+. ......+++|+.|.+.+.. ++.+..+ ....+++|+.|++.+.|
T Consensus 109 L~L~~N~-l~~~~-------~~~~~~l~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 109 LLLNANK-INCLR-------VDAFQDLHNLNLLSLYDNK-LQTIAKG-TFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp EECCSSC-CCCCC-------TTTTTTCTTCCEEECCSSC-CSCCCTT-TTTTCTTCCEEECCSSC
T ss_pred EECCCCC-CCEeC-------HHHcCCCCCCCEEECCCCc-CCEECHH-HHhCCCCCCEEEeCCCC
Confidence 9999874 43332 1233457899999998753 5555442 24467899999988754
No 204
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.95 E-value=3.5e-05 Score=80.12 Aligned_cols=72 Identities=17% Similarity=0.104 Sum_probs=43.8
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM 102 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L 102 (670)
+|++|+++++ +++.++. .+++|++|+++++ .+..++ ....+++|+.|++++|. ++.+ +. ..++|++|
T Consensus 154 ~L~~L~l~~N-~l~~lp~----~~~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N~-l~~l---~~--~~~~L~~L 220 (454)
T 1jl5_A 154 FLKIIDVDNN-SLKKLPD----LPPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNNS-LKKL---PD--LPLSLESI 220 (454)
T ss_dssp TCCEEECCSS-CCSCCCC----CCTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSC-CSSC---CC--CCTTCCEE
T ss_pred CCCEEECCCC-cCcccCC----CcccccEEECcCC-cCCcCc-cccCCCCCCEEECCCCc-CCcC---CC--CcCcccEE
Confidence 5666666655 3444332 3458888888887 455554 46677888888887773 3332 11 12467777
Q ss_pred ccccc
Q 037562 103 EIESC 107 (670)
Q Consensus 103 ~i~~c 107 (670)
++++|
T Consensus 221 ~l~~n 225 (454)
T 1jl5_A 221 VAGNN 225 (454)
T ss_dssp ECCSS
T ss_pred ECcCC
Confidence 77666
No 205
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.93 E-value=0.002 Score=74.13 Aligned_cols=329 Identities=10% Similarity=-0.013 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHHhcC-CCCCcHHHHHHcCCHHHHHHhhc----------------CCCCHHHHHHHHHHHHHHcCCChh
Q 037562 253 SLQLEATTLFINLLSF-DRSPPIDEVIQSGVVPRFVEFLM----------------RQDYPQLQFKAAWALTNIASGTSE 315 (670)
Q Consensus 253 ~~~~~a~~~L~~l~~~-~~~~~~~~~~~~g~l~~L~~ll~----------------~~~~~~v~~~a~~~L~~l~~~~~~ 315 (670)
+++..++.++...... . .+.. .....++.+.. +. +++ ++++..|+.++..+....+.
T Consensus 204 ~~~~~al~~l~~~~~~~~-ip~~---~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~l~~i~~~~~~ 277 (971)
T 2x1g_F 204 SNMNRAVKCVGTWIKNIG-YTIE---GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADE-NELAESCLKTMVNIIIQPDC 277 (971)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCGG---GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHH-HHHHHHHHHHHHHHHHCSGG
T ss_pred hHHHHHHHHHHHHHhhCC-cCcc---ccccHHHHHHh-hhhhhccccccccccccCcCC-cHHHHHHHHHHHHHHcCccc
Confidence 6788888888776551 1 1111 23345665665 41 134 78999999999999873221
Q ss_pred -hHHHHHhCCChHHHHHh-------hCCCC---HHHHHHHHHHHHHhhCCCchh-H-----------HHHHhcCChHHHH
Q 037562 316 -NTKVVIDHGAVPIFVKL-------LASPS---VDVRKQTVWALGNVAGDSPRC-R-----------DLVLSQGALIPLL 372 (670)
Q Consensus 316 -~~~~i~~~~~i~~L~~l-------L~~~~---~~v~~~a~~~L~~l~~~~~~~-~-----------~~i~~~~~i~~Ll 372 (670)
.....+. .+++.++.+ +...+ ++.....+..+..++...+.. . ..+. ..++.++
T Consensus 278 ~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~l~~ll 354 (971)
T 2x1g_F 278 HNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELSILVH--RIVQEIL 354 (971)
T ss_dssp GGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHHHHHH--HHHHHHH
T ss_pred cccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccHHHH--HHHHHHH
Confidence 1111111 123333331 23334 266666677776665322111 0 1111 1234444
Q ss_pred HHhcc----cCChhHHHHHHHHHHhhhcCC--------CCCChhh----hhhhHHHHHHhhccCC---------------
Q 037562 373 AELNE----NANLSMLRTATWTLFNFCRGK--------PQPPFNQ----VRPALPVLAQLIRSND--------------- 421 (670)
Q Consensus 373 ~~l~~----~~~~~~~~~a~~~L~~l~~~~--------~~~~~~~----~~~~i~~L~~lL~~~~--------------- 421 (670)
..... ..+.++...+++++..++... ....... ...+++.++..+..++
T Consensus 355 ~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f 434 (971)
T 2x1g_F 355 HCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECF 434 (971)
T ss_dssp HHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHH
T ss_pred HHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHH
Confidence 44322 246788889998888876511 0111111 2334444444443221
Q ss_pred hhHHHHHHHHHHHhccCCh-HHHHHHHHcCCHHHHHHhcCC-----CCccchhHHHHHHHHhhcCCchhhHHHHhCCChH
Q 037562 422 EEVLTDACWALSYLSDGTN-DKVQAVIEAGVYPRLVELLGH-----SSSSVLTPALRTIRNIVKGDDFQTQCIINCGALP 495 (670)
Q Consensus 422 ~~v~~~al~~L~~l~~~~~-~~~~~~~~~~~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~ 495 (670)
...|..+..++..++.... .....+ ++.+...+.+ .++..++.|+.+++.++.+...... ..++
T Consensus 435 ~~~R~~~~~~l~~~~~~~~~~~l~~~-----~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~-----~~l~ 504 (971)
T 2x1g_F 435 RCYRQDISDTFMYCYDVLNDYILEIL-----AAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEK-----RQIP 504 (971)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHHHHHH-----HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC-----------CHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhh-----HHHH
Confidence 1355666666666664433 222212 2233333332 6788999999999999876543221 2233
Q ss_pred HHHHhh---c--cCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHH
Q 037562 496 YFLDML---V--HNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQ 570 (670)
Q Consensus 496 ~L~~~l---~--~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~ 570 (670)
.++.++ . +. ++.+|..++|+++.++..-....+.+. .+++.++..+ + +.|+..|++++.+++.......
T Consensus 505 ~l~~~l~~l~~~d~-~~~vr~~a~~~l~~~~~~l~~~~~~l~--~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l 578 (971)
T 2x1g_F 505 RLMRVLAEIPYEKL-NVKLLGTALETMGSYCNWLMENPAYIP--PAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQL 578 (971)
T ss_dssp HHHHHHHHSCTTTS-CHHHHHHHHHHHHHTHHHHC----CHH--HHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHhcCcccc-CHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhc
Confidence 333332 3 23 789999999999998752111111111 2456666666 3 7899999999999997643333
Q ss_pred HHHHHHcCCcHHHHhhccC--CChHHHHHHHHHHHHHHHh
Q 037562 571 IKHLVREGCVKPLCDLLLC--ADPKIVTVCLEGLENILKV 608 (670)
Q Consensus 571 ~~~l~~~~~i~~L~~ll~~--~~~~v~~~a~~~l~~l~~~ 608 (670)
..++ ..++..+..++.. -+.+.+..+..++..++..
T Consensus 579 ~p~~--~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 579 KPYA--DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHH--HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred cccH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 2222 2356666777766 3578888999999998864
No 206
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.92 E-value=3.6e-05 Score=77.51 Aligned_cols=136 Identities=17% Similarity=0.156 Sum_probs=65.5
Q ss_pred cccEEEeccCcCcccccccccc-cCCCCcEEEEecCCCCccccC-CCccccccceeeecccccccccccchhhhcccccc
Q 037562 23 EVKISEAYNCYRLENILIEESS-VMNNLVILCVHCCDHLINLVP-SSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLR 100 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~-~~~~L~~L~i~~c~~l~~~~~-~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~ 100 (670)
.++.|++++. +++.++..... .+++|+.|+++++. +..+++ .+..+++|++|+++++. ++.+ ++..+..+++|+
T Consensus 40 ~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~ 115 (361)
T 2xot_A 40 YTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNH-LHTL-DEFLFSDLQALE 115 (361)
T ss_dssp TCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEE-CTTTTTTCTTCC
T ss_pred CCCEEECCCC-CCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCc-CCcC-CHHHhCCCcCCC
Confidence 4556666554 35554443223 55666666665552 444443 24455666666666652 4443 122344566666
Q ss_pred eeccccccccceeccccccccccccccccccccccccccccccccccCCc--ccCCCCccEEeEecCCCccccc
Q 037562 101 YMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNC--AFTFPSLEILVVNYCPNMKIFS 172 (670)
Q Consensus 101 ~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~~~~L~~L~i~~C~~l~~~p 172 (670)
+|+++++. +..+. ......+++|+.|.+.+. +++.++.... ...+++|+.|+++++ +++.+|
T Consensus 116 ~L~L~~N~-i~~~~-------~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~ 179 (361)
T 2xot_A 116 VLLLYNNH-IVVVD-------RNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLP 179 (361)
T ss_dssp EEECCSSC-CCEEC-------TTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCC
T ss_pred EEECCCCc-ccEEC-------HHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccC
Confidence 66666553 22221 112234556666666553 3444333210 023566666666654 344444
No 207
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.90 E-value=2e-05 Score=79.41 Aligned_cols=147 Identities=19% Similarity=0.196 Sum_probs=103.5
Q ss_pred cEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCc--cccccceeeecccccccccccchhhhccccccee
Q 037562 25 KISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSST--SFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM 102 (670)
Q Consensus 25 ~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~--~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L 102 (670)
+.+...+. +|+.+|.. ..+.++.|+++++ .+..+++... .+++|+.|+++++ +++.+. +..+..+++|++|
T Consensus 21 ~~l~c~~~-~l~~iP~~---~~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~-~~~~~~l~~L~~L 93 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQS---LPSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFIS-SEAFVPVPNLRYL 93 (361)
T ss_dssp TEEECCSS-CCSSCCSS---CCTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEEC-TTTTTTCTTCCEE
T ss_pred CEEEeCCC-CcCccCcc---CCCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccC-hhhccCCCCCCEE
Confidence 45554433 57777753 3567999999987 4777766543 7899999999987 555552 2346789999999
Q ss_pred ccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCC----cCC
Q 037562 103 EIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGE----LST 178 (670)
Q Consensus 103 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~----~~~ 178 (670)
+++++. ++.+.. .....+++|+.|.+.+.. ++.+..+ ....+++|+.|++.++ ++..+|... ..+
T Consensus 94 ~Ls~N~-l~~~~~-------~~~~~l~~L~~L~L~~N~-i~~~~~~-~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l 162 (361)
T 2xot_A 94 DLSSNH-LHTLDE-------FLFSDLQALEVLLLYNNH-IVVVDRN-AFEDMAQLQKLYLSQN-QISRFPVELIKDGNKL 162 (361)
T ss_dssp ECCSSC-CCEECT-------TTTTTCTTCCEEECCSSC-CCEECTT-TTTTCTTCCEEECCSS-CCCSCCGGGTC----C
T ss_pred ECCCCc-CCcCCH-------HHhCCCcCCCEEECCCCc-ccEECHH-HhCCcccCCEEECCCC-cCCeeCHHHhcCcccC
Confidence 999875 555532 123457899999998864 4454332 3456899999999987 577788765 357
Q ss_pred CCccceeeeec
Q 037562 179 PNLHKVQLSRW 189 (670)
Q Consensus 179 ~~L~~l~i~~~ 189 (670)
++|+.|++++.
T Consensus 163 ~~L~~L~L~~N 173 (361)
T 2xot_A 163 PKLMLLDLSSN 173 (361)
T ss_dssp TTCCEEECCSS
T ss_pred CcCCEEECCCC
Confidence 89999988653
No 208
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.88 E-value=0.0031 Score=71.83 Aligned_cols=339 Identities=11% Similarity=0.093 Sum_probs=184.4
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHH-HhhcCCCCHHHHHHHHHHHHHHcCCC---h--hhHHHHHh
Q 037562 249 SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFV-EFLMRQDYPQLQFKAAWALTNIASGT---S--ENTKVVID 322 (670)
Q Consensus 249 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~-~ll~~~~~~~v~~~a~~~L~~l~~~~---~--~~~~~i~~ 322 (670)
..++++...++.++....+- -....+++.+.++.+. .++.+ ++++..|+.+|..+.... + ...+.+..
T Consensus 206 ~~~~~l~~~~L~~l~s~l~W---I~i~~i~~~~ll~~l~~~~L~~---~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~ 279 (1023)
T 4hat_C 206 GASSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMTS---PDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL 279 (1023)
T ss_dssp CSSCHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHHS---HHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHh---CCHHHhcchhHHHHHHHHHcCC---HHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence 45678888899999888664 3356778888999999 88853 789999999999998622 2 12211110
Q ss_pred --CCChHHH--------------HHhhCCCCHHHHHHHHHHHHHhhC-------CCchhHHHHHhcCChHHHHHHhcccC
Q 037562 323 --HGAVPIF--------------VKLLASPSVDVRKQTVWALGNVAG-------DSPRCRDLVLSQGALIPLLAELNENA 379 (670)
Q Consensus 323 --~~~i~~L--------------~~lL~~~~~~v~~~a~~~L~~l~~-------~~~~~~~~i~~~~~i~~Ll~~l~~~~ 379 (670)
.+.++.+ ...-...+.+....-+..+..+.. ..+..+..+. .++..++..- ..+
T Consensus 280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~-~~~ 356 (1023)
T 4hat_C 280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLS-KIE 356 (1023)
T ss_dssp HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHT-TSS
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhh-CCC
Confidence 0111111 111122345555555555544431 1122222221 0123344432 455
Q ss_pred ChhHHHHHHHHHHhhhcCC--CCCChhhhhhhH----HHHHHhhccCC--------------------hh-HH----HHH
Q 037562 380 NLSMLRTATWTLFNFCRGK--PQPPFNQVRPAL----PVLAQLIRSND--------------------EE-VL----TDA 428 (670)
Q Consensus 380 ~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~~i----~~L~~lL~~~~--------------------~~-v~----~~a 428 (670)
+.++...++.....++..- .........+++ +.++.-+..+. ++ .. +.+
T Consensus 357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~ 436 (1023)
T 4hat_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREV 436 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHH
Confidence 7777777766655555421 111222333333 44443333221 00 11 122
Q ss_pred HHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC--CCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhcc---
Q 037562 429 CWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH--SSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVH--- 503 (670)
Q Consensus 429 l~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~--- 503 (670)
+..+.++.. ++..+ -+++.+...+.. .++..++.++++++.++.+.......-.-..+++.|+.++.+
T Consensus 437 L~~l~~l~~--~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~ 509 (1023)
T 4hat_C 437 LVYLTHLNV--IDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRG 509 (1023)
T ss_dssp HHHHHHHCH--HHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHhccCH--HHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcccc
Confidence 223333221 11111 122334444443 578899999999999997654432222223467788888764
Q ss_pred --CCchhHHHHHHHHHHHhhc---CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHH------
Q 037562 504 --NHEESIKKEVSWIISNITC---GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIK------ 572 (670)
Q Consensus 504 --~~~~~v~~~a~~~L~~l~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~------ 572 (670)
. ...++..++|+++..+. ..++... .++..|+..+.++++.++..|++++.+++..+......
T Consensus 510 ~d~-k~~v~~t~~~~lGry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~ 583 (1023)
T 4hat_C 510 KDN-KAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRES 583 (1023)
T ss_dssp HHH-HHHHHHHHHHHHHTCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCS
T ss_pred Ccc-hHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 2 44567788899998865 2333222 24555666666677899999999999999853322110
Q ss_pred -HHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhh
Q 037562 573 -HLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGV 610 (670)
Q Consensus 573 -~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~ 610 (670)
..++ .++..+......-++.-+..+.+++..++...+
T Consensus 584 ~p~~~-~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 584 EPFIQ-TIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp SCHHH-HHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred chhHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 0000 122333333444566666788888888776543
No 209
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.84 E-value=0.0026 Score=73.23 Aligned_cols=343 Identities=11% Similarity=0.081 Sum_probs=185.8
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhh---CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCC
Q 037562 291 MRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLL---ASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGA 367 (670)
Q Consensus 291 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL---~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~ 367 (670)
.+.+ ...++.++++++.++.+..... ...++.++..+ .++++.++..++++++.++..-....+.+ ..+
T Consensus 459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~v 530 (963)
T 2x19_B 459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI--NSV 530 (963)
T ss_dssp CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTT
T ss_pred CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHH
Confidence 4455 6889999999999998543211 12334444433 33678899999999999974211111221 246
Q ss_pred hHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccC--ChhHHHHHHHHHHHhccCCh-HHHH
Q 037562 368 LIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSN--DEEVLTDACWALSYLSDGTN-DKVQ 444 (670)
Q Consensus 368 i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~al~~L~~l~~~~~-~~~~ 444 (670)
++.++..+ .+ +.++..|++++.+++......-......+++.+..++... +...+..+..+++.++...+ +...
T Consensus 531 l~~l~~~l-~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~ 607 (963)
T 2x19_B 531 LPLVLHAL-GN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL 607 (963)
T ss_dssp HHHHHHHT-TC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHh-CC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence 77888887 33 7899999999999997543222233456667777777753 57888889999999876543 3333
Q ss_pred HHHHcCCHHHHHHhc----CCC-Cccchh---HHHHHHHHhhcCCch---------------------hhHHHHhCCChH
Q 037562 445 AVIEAGVYPRLVELL----GHS-SSSVLT---PALRTIRNIVKGDDF---------------------QTQCIINCGALP 495 (670)
Q Consensus 445 ~~~~~~~i~~L~~lL----~~~-~~~v~~---~a~~~L~~l~~~~~~---------------------~~~~l~~~~~~~ 495 (670)
..++ .+++.+...+ +.. +++.+. .++.+|+.+...-.. ..-.-+...+++
T Consensus 608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (963)
T 2x19_B 608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQ 686 (963)
T ss_dssp HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHH
Confidence 3333 3444444333 222 333333 344555555432110 000011223455
Q ss_pred HHHHhhcc-CCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHH----hhc-CChhHHHHHHHHHHHhcCCC-CH
Q 037562 496 YFLDMLVH-NHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNL----LQN-TEFDTKKEAAWAISNATKFG-TH 568 (670)
Q Consensus 496 ~L~~~l~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~l----l~~-~~~~v~~~a~~aL~~l~~~~-~~ 568 (670)
.+..++.. ..++.+.+.++.++..++....+.. ...++.++.. ... +.+.+..-+...+..+.... ..
T Consensus 687 ~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~-----~~~l~~~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~~~~ 761 (963)
T 2x19_B 687 LIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDF-----APMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHF 761 (963)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTT-----GGGHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCTTTC
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHHhhcccc-----cccHHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCcchH
Confidence 55555542 1267888999999988754211110 1123433333 222 22222222222222222210 01
Q ss_pred HHHHHHHHcCCcHHHHhhcc---CCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCC
Q 037562 569 EQIKHLVREGCVKPLCDLLL---CADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHD 645 (670)
Q Consensus 569 ~~~~~l~~~~~i~~L~~ll~---~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~ 645 (670)
+....+.+ ..+..+..++. ..+++++......+..++......--.+ ...+... ++.+.....+.
T Consensus 762 ~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~-----~~~~~~i------~~~~~~~l~~~ 829 (963)
T 2x19_B 762 PPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCE-----RLDVKAV------FQCAVLALKFP 829 (963)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCT-----TSCHHHH------HHHHHHHTTCS
T ss_pred HHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCC-----cccHHHH------HHHHHHHcCCC
Confidence 11211111 12333333332 2469999999999999998765433110 0002222 33433445688
Q ss_pred CHHHHHHHHHHHHHhcC
Q 037562 646 DNGISEKAVEILETYWS 662 (670)
Q Consensus 646 ~~~v~~~a~~~l~~~~~ 662 (670)
+.++...+.+.+..++.
T Consensus 830 ~~~~~~~~l~~l~~l~~ 846 (963)
T 2x19_B 830 EAPTVKASCGFFTELLP 846 (963)
T ss_dssp CHHHHHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 89999999998888764
No 210
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=97.83 E-value=0.0017 Score=74.77 Aligned_cols=390 Identities=8% Similarity=0.015 Sum_probs=212.2
Q ss_pred hccHHHHHHHhc-CCChHHHHHHHHHHHHHhcCC---CCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC
Q 037562 237 LEILPAMVDGVW-SDDNSLQLEATTLFINLLSFD---RSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASG 312 (670)
Q Consensus 237 ~~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 312 (670)
.+....+...+. +.++.++..|+..|.+..... =++..+..+...+++.+.+.- ... +.++...+.++..++..
T Consensus 38 p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~-~~~-~~vr~kl~~~la~i~~~ 115 (971)
T 2x1g_F 38 PQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFA-GGP-KIVLNRLCISLGAYIVH 115 (971)
T ss_dssp THHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHT-TSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhC-CCC-HHHHHHHHHHHHHHHHH
Confidence 455666777775 567899999999999887542 022234444555666665543 334 79999999999999874
Q ss_pred ChhhHHHHHhCCChHHHHHhhCCC------CHHHHHHHHHHHHHhhCC----Cc-hh----HHHHHhcCChHHHHHHh--
Q 037562 313 TSENTKVVIDHGAVPIFVKLLASP------SVDVRKQTVWALGNVAGD----SP-RC----RDLVLSQGALIPLLAEL-- 375 (670)
Q Consensus 313 ~~~~~~~i~~~~~i~~L~~lL~~~------~~~v~~~a~~~L~~l~~~----~~-~~----~~~i~~~~~i~~Ll~~l-- 375 (670)
... .-.+.++.++..++++ ++...+.++.+|..++.+ .+ .- ++.+.. .++.++.++
T Consensus 116 ~~p-----~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~--~~~~vl~ll~~ 188 (971)
T 2x1g_F 116 MLG-----EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAK--RVQLVIHTVER 188 (971)
T ss_dssp TTC-----C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHT--THHHHHHHHHH
T ss_pred ccc-----cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 321 1235778888888764 567788888888887732 11 11 122211 244444333
Q ss_pred --cccCCh-------hHHHHHHHHHHhhhc--CCCCCChhhhhhhHHHHHHhhc----------------cCChhHHHHH
Q 037562 376 --NENANL-------SMLRTATWTLFNFCR--GKPQPPFNQVRPALPVLAQLIR----------------SNDEEVLTDA 428 (670)
Q Consensus 376 --~~~~~~-------~~~~~a~~~L~~l~~--~~~~~~~~~~~~~i~~L~~lL~----------------~~~~~v~~~a 428 (670)
....++ .++..++.++..... .-+.. .....++.+.. +. .++++++..|
T Consensus 189 ~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~---~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~a 264 (971)
T 2x1g_F 189 YLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE---GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAESC 264 (971)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG---GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHHH
T ss_pred HHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc---ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHHH
Confidence 222222 677788888876555 22222 44667777766 41 1457899999
Q ss_pred HHHHHHhccCCh-----HHHHHHHHcCCHHH---HHHhcCCCCc---cchhHHHHHHHHhhcCCchhhH-----------
Q 037562 429 CWALSYLSDGTN-----DKVQAVIEAGVYPR---LVELLGHSSS---SVLTPALRTIRNIVKGDDFQTQ----------- 486 (670)
Q Consensus 429 l~~L~~l~~~~~-----~~~~~~~~~~~i~~---L~~lL~~~~~---~v~~~a~~~L~~l~~~~~~~~~----------- 486 (670)
+.++..+....+ .....++. +.+.. +...+..++. ......++.+..++........
T Consensus 265 ~~~l~~i~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 343 (971)
T 2x1g_F 265 LKTMVNIIIQPDCHNYPKTAFVLIK-MFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPELS 343 (971)
T ss_dssp HHHHHHHHHCSGGGGCHHHHHHHHH-HHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHcCccccccHHHHHHHHH-HHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCccccc
Confidence 999999886433 11111221 11111 1112244443 6666777777777643222111
Q ss_pred HHHhCCChHHHHHhhcc----CCchhHHHHHHHHHHHhhcC--------C-HHHH---HHHHhcCChHHHHHHhhcCCh-
Q 037562 487 CIINCGALPYFLDMLVH----NHEESIKKEVSWIISNITCG--------N-REQI---QAVIDSGLIGPIVNLLQNTEF- 549 (670)
Q Consensus 487 ~l~~~~~~~~L~~~l~~----~~~~~v~~~a~~~L~~l~~~--------~-~~~~---~~l~~~~~i~~L~~ll~~~~~- 549 (670)
..+ ..+++.++.+... ..++++...+++....++.. . +... ..+.. .+++.++..+..++.
T Consensus 344 ~~l-~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~~l~~~~~~p~~~ 421 (971)
T 2x1g_F 344 ILV-HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYA-HLTRILVRKSEQPDEK 421 (971)
T ss_dssp HHH-HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHH-HHHHHHHHHTSCCCTT
T ss_pred HHH-HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH-HHHHHHHHHhcCCCcc
Confidence 001 1345555555533 22678888999888777541 0 1111 11111 345555555432111
Q ss_pred --------------hHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccC-----CChHHHHHHHHHHHHHHHhhh
Q 037562 550 --------------DTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLC-----ADPKIVTVCLEGLENILKVGV 610 (670)
Q Consensus 550 --------------~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-----~~~~v~~~a~~~l~~l~~~~~ 610 (670)
..|..+..++..++..........+ .+.+...+.. .+...++.++.+++.+.+...
T Consensus 422 ~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~-----~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~ 496 (971)
T 2x1g_F 422 SLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEIL-----AAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFG 496 (971)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHH-----HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC--
T ss_pred cccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcC
Confidence 3566777777777665332333332 2233333322 567789999999988765433
Q ss_pred hhhccCCCCCCccHHHHHHHHhchHHHHHHhhc-CCCHHHHHHHHHHHHHhc
Q 037562 611 AEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQS-HDDNGISEKAVEILETYW 661 (670)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~-~~~~~v~~~a~~~l~~~~ 661 (670)
... ...... .++.+..+.. +.++.|+..+.+++.+|-
T Consensus 497 ~~~---------~~~l~~-----l~~~l~~l~~~d~~~~vr~~a~~~l~~~~ 534 (971)
T 2x1g_F 497 GEE---------KRQIPR-----LMRVLAEIPYEKLNVKLLGTALETMGSYC 534 (971)
T ss_dssp -------------CHHHH-----HHHHHHHSCTTTSCHHHHHHHHHHHHHTH
T ss_pred hhh---------hHHHHH-----HHHHHHhcCccccCHHHHHHHHHHHHHHH
Confidence 211 011111 1334444442 358899999999999874
No 211
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.83 E-value=1e-06 Score=92.47 Aligned_cols=83 Identities=11% Similarity=0.114 Sum_probs=45.4
Q ss_pred cccEEEeccCcCccccc----ccccccCCCCcEEEEecCCCCccc-----cC-CCccccccceeeecccccccccc---c
Q 037562 23 EVKISEAYNCYRLENIL----IEESSVMNNLVILCVHCCDHLINL-----VP-SSTSFQNLTNLVVSHCKRLKIVL---T 89 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~----~~~~~~~~~L~~L~i~~c~~l~~~-----~~-~~~~~~~L~~L~i~~c~~l~~l~---~ 89 (670)
+|++|++++|. ++... ......+++|++|++++|. +... .+ ....+++|++|++++| .++... .
T Consensus 200 ~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l 276 (461)
T 1z7x_W 200 QLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDL 276 (461)
T ss_dssp CCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHH
T ss_pred CceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHH
Confidence 78888888773 44321 1112456777777777773 3321 11 1123567777777777 444310 0
Q ss_pred chhhhcccccceecccccc
Q 037562 90 SSIAKTLVRLRYMEIESCD 108 (670)
Q Consensus 90 ~~~~~~l~~L~~L~i~~c~ 108 (670)
+..+..+++|++|+++++.
T Consensus 277 ~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 277 CRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHCTTCCEEECTTCC
T ss_pred HHHHhhCCCcceEECCCCC
Confidence 1234456777777776653
No 212
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.83 E-value=4.9e-05 Score=80.75 Aligned_cols=131 Identities=17% Similarity=0.132 Sum_probs=92.3
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhccccccee
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM 102 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L 102 (670)
+|+.|++.++ +++.++.. .+++|+.|+++++. +..+| ..+++|+.|+++++ +++.+. . +.. +|++|
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~---l~~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N-~l~~ip--~-l~~--~L~~L 125 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDN---LPPQITVLEITQNA-LISLP---ELPASLEYLDACDN-RLSTLP--E-LPA--SLKHL 125 (571)
T ss_dssp TCSEEECCSS-CCSCCCSC---CCTTCSEEECCSSC-CSCCC---CCCTTCCEEECCSS-CCSCCC--C-CCT--TCCEE
T ss_pred CccEEEeCCC-CCCccCHh---HcCCCCEEECcCCC-Ccccc---cccCCCCEEEccCC-CCCCcc--h-hhc--CCCEE
Confidence 7899999887 47776653 35899999999884 66776 45799999999998 566542 2 222 99999
Q ss_pred ccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCcCCCCcc
Q 037562 103 EIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLH 182 (670)
Q Consensus 103 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~ 182 (670)
+++++. +..++. .+++|+.|.++++. ++.++. .+++|+.|++.+|. +..+|. +. ++|+
T Consensus 126 ~Ls~N~-l~~lp~-----------~l~~L~~L~Ls~N~-l~~lp~-----~l~~L~~L~Ls~N~-L~~lp~-l~--~~L~ 183 (571)
T 3cvr_A 126 DVDNNQ-LTMLPE-----------LPALLEYINADNNQ-LTMLPE-----LPTSLEVLSVRNNQ-LTFLPE-LP--ESLE 183 (571)
T ss_dssp ECCSSC-CSCCCC-----------CCTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSSC-CSCCCC-CC--TTCC
T ss_pred ECCCCc-CCCCCC-----------cCccccEEeCCCCc-cCcCCC-----cCCCcCEEECCCCC-CCCcch-hh--CCCC
Confidence 998874 444321 46788888887753 444432 45778888888774 666776 32 7788
Q ss_pred ceeeeec
Q 037562 183 KVQLSRW 189 (670)
Q Consensus 183 ~l~i~~~ 189 (670)
.|++++.
T Consensus 184 ~L~Ls~N 190 (571)
T 3cvr_A 184 ALDVSTN 190 (571)
T ss_dssp EEECCSS
T ss_pred EEECcCC
Confidence 8877654
No 213
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.82 E-value=2.5e-06 Score=87.14 Aligned_cols=83 Identities=10% Similarity=0.001 Sum_probs=44.5
Q ss_pred CccccEEEeccCcCccc-----ccccccccCCCCcEEEEecCCCCccc-----cCCCccc---------cccceeeeccc
Q 037562 21 GMEVKISEAYNCYRLEN-----ILIEESSVMNNLVILCVHCCDHLINL-----VPSSTSF---------QNLTNLVVSHC 81 (670)
Q Consensus 21 ~~~L~~L~i~~c~~l~~-----~~~~~~~~~~~L~~L~i~~c~~l~~~-----~~~~~~~---------~~L~~L~i~~c 81 (670)
..+|++|+++++. +.. ++. ....+++|++|++++|. +... +.....+ ++|++|++++|
T Consensus 93 ~~~L~~L~Ls~n~-l~~~~~~~l~~-~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 93 CPKLHTVRLSDNA-FGPTAQEPLID-FLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp CTTCCEEECCSCC-CCTTTHHHHHH-HHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred CCcccEEECCCCc-CCHHHHHHHHH-HHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 4478888887764 333 222 23557788888887775 2211 1111112 67777777776
Q ss_pred ccccccccc---hhhhcccccceeccccc
Q 037562 82 KRLKIVLTS---SIAKTLVRLRYMEIESC 107 (670)
Q Consensus 82 ~~l~~l~~~---~~~~~l~~L~~L~i~~c 107 (670)
. +.....+ ..+..+++|++|++++|
T Consensus 170 ~-l~~~~~~~l~~~l~~~~~L~~L~L~~n 197 (386)
T 2ca6_A 170 R-LENGSMKEWAKTFQSHRLLHTVKMVQN 197 (386)
T ss_dssp C-CTGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred C-CCcHHHHHHHHHHHhCCCcCEEECcCC
Confidence 3 2211111 12345667777777666
No 214
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.82 E-value=0.015 Score=67.38 Aligned_cols=358 Identities=9% Similarity=0.097 Sum_probs=191.6
Q ss_pred hhccHHHHHHHhcCCChHHHHHHHHHHHHHhcC---CCCC---c-H-----HHHHH--cCCHHHHHHhhcCCCCHHHHHH
Q 037562 236 KLEILPAMVDGVWSDDNSLQLEATTLFINLLSF---DRSP---P-I-----DEVIQ--SGVVPRFVEFLMRQDYPQLQFK 301 (670)
Q Consensus 236 ~~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~---~~~~---~-~-----~~~~~--~g~l~~L~~ll~~~~~~~v~~~ 301 (670)
..+.++.+++.++ .++.....++..|..+... .+.+ . . ..+.. ..+++.+...+.+..++.++..
T Consensus 136 Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~ 214 (1049)
T 3m1i_C 136 WPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVA 214 (1049)
T ss_dssp CTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred chHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 4466888888886 4444555556666555421 0011 0 0 11221 1123334455544433789999
Q ss_pred HHHHHHHHcCCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCC--ch---hHHHHHhcCChHHHHHHh
Q 037562 302 AAWALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSVDVRKQTVWALGNVAGDS--PR---CRDLVLSQGALIPLLAEL 375 (670)
Q Consensus 302 a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~--~~---~~~~i~~~~~i~~Ll~~l 375 (670)
++.++.....--+ ...+.+...++.+.+ ++ .+++++..|+.+|..+.... +. ....+.. .++.++..+
T Consensus 215 aL~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~--l~~~~l~~l 288 (1049)
T 3m1i_C 215 TLESLLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL--FFQNTLQQI 288 (1049)
T ss_dssp HHHHHHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHH--HHHHHHHHH
Confidence 9999988765222 233555667777773 44 37899999999999988542 21 1111111 112222211
Q ss_pred c-----------------ccCChhHHHHHHHHHHhhhcCC------CCCChhhhhhhHHHHHHhhccCChhHHHHHHHHH
Q 037562 376 N-----------------ENANLSMLRTATWTLFNFCRGK------PQPPFNQVRPALPVLAQLIRSNDEEVLTDACWAL 432 (670)
Q Consensus 376 ~-----------------~~~~~~~~~~a~~~L~~l~~~~------~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L 432 (670)
. .+.+.+.....+..+..+.... +.........+++.++.....++.++...++...
T Consensus 289 ~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw 368 (1049)
T 3m1i_C 289 ATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYW 368 (1049)
T ss_dssp HHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 0 1223444445555444332210 1111222345677777777777888888888777
Q ss_pred HHhcc----C--ChHHHHHHHHcCCHHHHHHhcCCCCc----------------------cchhHHHHHHHHhhcCCchh
Q 037562 433 SYLSD----G--TNDKVQAVIEAGVYPRLVELLGHSSS----------------------SVLTPALRTIRNIVKGDDFQ 484 (670)
Q Consensus 433 ~~l~~----~--~~~~~~~~~~~~~i~~L~~lL~~~~~----------------------~v~~~a~~~L~~l~~~~~~~ 484 (670)
..++. . .......++. .+++.++..+..++. ..+..+..+|..++...+..
T Consensus 369 ~~l~~~l~~~~~~~~~~~~~l~-~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~ 447 (1049)
T 3m1i_C 369 HNLVADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVID 447 (1049)
T ss_dssp HHHHHHHHHSTTCGGGGHHHHH-HHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHhchhHHHHHHHHHH-HHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHH
Confidence 77654 1 1111222222 345556665543210 11234555666665322221
Q ss_pred hHHHHhCCChHHHHHhhcc-CCchhHHHHHHHHHHHhhcCCHHH-HHHHHhcCChHHHHHHhhc-----CChhHHHHHHH
Q 037562 485 TQCIINCGALPYFLDMLVH-NHEESIKKEVSWIISNITCGNREQ-IQAVIDSGLIGPIVNLLQN-----TEFDTKKEAAW 557 (670)
Q Consensus 485 ~~~l~~~~~~~~L~~~l~~-~~~~~v~~~a~~~L~~l~~~~~~~-~~~l~~~~~i~~L~~ll~~-----~~~~v~~~a~~ 557 (670)
.-. -+.+.+-..+.+ ..+...++.|+++++.++.+.... ...+. ..+++.+..+... +.+.++..+++
T Consensus 448 ~l~----~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l-~~v~~~l~~l~~~~~~~~~~~~v~~~~~~ 522 (1049)
T 3m1i_C 448 TEE----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLTVKKRGKDNKAVVASDIMY 522 (1049)
T ss_dssp HHH----HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHTTSSCSHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHH-HHHHHHHHHHHhhhccccchHHHHHHHHH
Confidence 111 123444444543 227788999999999997643222 11111 1244444443331 23445556889
Q ss_pred HHHHhcCC--CCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhh
Q 037562 558 AISNATKF--GTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVA 611 (670)
Q Consensus 558 aL~~l~~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~ 611 (670)
+++.++.. ..++.... +++.+++.++++++.|+..|+.++.++++....
T Consensus 523 ~lgry~~~~~~~~~~l~~-----vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~ 573 (1049)
T 3m1i_C 523 VVGQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1049)
T ss_dssp HHHHCHHHHHHCHHHHHH-----HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHhHHHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99877642 12222222 577788888888999999999999999986543
No 215
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.80 E-value=0.00011 Score=67.86 Aligned_cols=130 Identities=15% Similarity=0.151 Sum_probs=94.1
Q ss_pred cccEEEeccCcCcccccc-cccccCCCCcEEEEecCCCCccccC-CCccccccceeeecccccccccccchhhhcccccc
Q 037562 23 EVKISEAYNCYRLENILI-EESSVMNNLVILCVHCCDHLINLVP-SSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLR 100 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~-~~~~~~~~L~~L~i~~c~~l~~~~~-~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~ 100 (670)
.++.|.+++. +++.++. .....+++|+.|+++++. +..+++ .+..+++|+.|+++++. ++.+ ++..+..+++|+
T Consensus 33 ~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~ 108 (220)
T 2v70_A 33 YTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNR-LENV-QHKMFKGLESLK 108 (220)
T ss_dssp TCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCCC-CGGGGTTCSSCC
T ss_pred CCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCc-cCcc-CHhHhcCCcCCC
Confidence 6789999887 4666642 334679999999998875 667665 56788999999999884 4444 234467899999
Q ss_pred eeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCC
Q 037562 101 YMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCP 166 (670)
Q Consensus 101 ~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~ 166 (670)
+|+++++. +..+. +.....+++|+.|.+.+. +++.+... ....+++|+.|++.+.|
T Consensus 109 ~L~Ls~N~-l~~~~-------~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 109 TLMLRSNR-ITCVG-------NDSFIGLSSVRLLSLYDN-QITTVAPG-AFDTLHSLSTLNLLANP 164 (220)
T ss_dssp EEECTTSC-CCCBC-------TTSSTTCTTCSEEECTTS-CCCCBCTT-TTTTCTTCCEEECCSCC
T ss_pred EEECCCCc-CCeEC-------HhHcCCCccCCEEECCCC-cCCEECHH-HhcCCCCCCEEEecCcC
Confidence 99999875 33332 123345789999999885 56665432 34568999999998764
No 216
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.76 E-value=3.5e-05 Score=85.08 Aligned_cols=111 Identities=15% Similarity=0.017 Sum_probs=78.7
Q ss_pred cCCCccccccceeeecccccccccccchhhhcccccceeccccccccceecccccccccccccccccccccccccccccc
Q 037562 64 VPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLI 143 (670)
Q Consensus 64 ~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 143 (670)
+..+..+++|+.|+++++. +..+ +..+..+++|++|+++++. +..++. ....+++|+.|.|+++. |+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~-l~~l--~~~~~~l~~L~~L~Ls~N~-l~~lp~--------~~~~l~~L~~L~Ls~N~-l~ 283 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQ-IFNI--SANIFKYDFLTRLYLNGNS-LTELPA--------EIKNLSNLRVLDLSHNR-LT 283 (727)
T ss_dssp -----CCCCCCEEECTTSC-CSCC--CGGGGGCCSCSCCBCTTSC-CSCCCG--------GGGGGTTCCEEECTTSC-CS
T ss_pred hhhhccCCCCcEEECCCCC-CCCC--ChhhcCCCCCCEEEeeCCc-CcccCh--------hhhCCCCCCEEeCcCCc-CC
Confidence 4445667889999998885 3444 2345578899999998874 444431 23468889999998865 66
Q ss_pred ccccCCcccCCCCccEEeEecCCCccccccCCcCCCCccceeeeecc
Q 037562 144 SFCSGNCAFTFPSLEILVVNYCPNMKIFSGGELSTPNLHKVQLSRWD 190 (670)
Q Consensus 144 ~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~~~~~L~~l~i~~~~ 190 (670)
.++.. ...+++|+.|++.+| ++..+|.++..+++|+.|++++..
T Consensus 284 ~lp~~--~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 284 SLPAE--LGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SCCSS--GGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSC
T ss_pred ccChh--hcCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCc
Confidence 66543 567889999999988 678899888888999999886544
No 217
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.75 E-value=5.2e-05 Score=80.91 Aligned_cols=122 Identities=18% Similarity=0.178 Sum_probs=86.8
Q ss_pred CCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceeccccccccccccc
Q 037562 47 NNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVI 126 (670)
Q Consensus 47 ~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~ 126 (670)
..|+.|+++++ .+..+|. ++.+++|+.|+++++ +++.+ |..+..+++|+.|+++++. ++.++ ...
T Consensus 441 ~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N-~l~~l--p~~~~~l~~L~~L~Ls~N~-l~~lp---------~l~ 505 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHN-RLRAL--PPALAALRCLEVLQASDNA-LENVD---------GVA 505 (567)
T ss_dssp TTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSS-CCCCC--CGGGGGCTTCCEEECCSSC-CCCCG---------GGT
T ss_pred cCceEEEecCC-CCCCCcC-ccccccCcEeecCcc-ccccc--chhhhcCCCCCEEECCCCC-CCCCc---------ccC
Confidence 36889999887 5777765 788899999999987 45554 3467789999999998874 44332 234
Q ss_pred cccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCc----CCCCcccee
Q 037562 127 TFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGEL----STPNLHKVQ 185 (670)
Q Consensus 127 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~----~~~~L~~l~ 185 (670)
.+++|+.|.++++ +++.+........+++|+.|++++++ +..+|.... .+|+|+.|+
T Consensus 506 ~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 506 NLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp TCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 5888999999875 56665311135678999999999875 666665432 268888774
No 218
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.74 E-value=5.6e-05 Score=80.66 Aligned_cols=102 Identities=15% Similarity=0.172 Sum_probs=76.4
Q ss_pred cccceeeecccccccccccchhhhcccccceeccccccccceeccccccccccccccccccccccccccccccccccCCc
Q 037562 71 QNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNC 150 (670)
Q Consensus 71 ~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 150 (670)
..|+.|+++++ +++.+ +.+..+++|+.|+++++. ++.++. ....+++|+.|.+++. .++.++ .
T Consensus 441 ~~L~~L~Ls~n-~l~~l---p~~~~l~~L~~L~Ls~N~-l~~lp~--------~~~~l~~L~~L~Ls~N-~l~~lp---~ 503 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTVL---CHLEQLLLVTHLDLSHNR-LRALPP--------ALAALRCLEVLQASDN-ALENVD---G 503 (567)
T ss_dssp TTCSEEECTTS-CCSSC---CCGGGGTTCCEEECCSSC-CCCCCG--------GGGGCTTCCEEECCSS-CCCCCG---G
T ss_pred cCceEEEecCC-CCCCC---cCccccccCcEeecCccc-ccccch--------hhhcCCCCCEEECCCC-CCCCCc---c
Confidence 36899999987 66665 237889999999998874 445432 3346889999999875 455554 2
Q ss_pred ccCCCCccEEeEecCCCcccc--ccCCcCCCCccceeeeecc
Q 037562 151 AFTFPSLEILVVNYCPNMKIF--SGGELSTPNLHKVQLSRWD 190 (670)
Q Consensus 151 ~~~~~~L~~L~i~~C~~l~~~--p~~~~~~~~L~~l~i~~~~ 190 (670)
...+++|+.|+++++ ++..+ |..+..+++|+.|++++.+
T Consensus 504 l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 504 VANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp GTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred cCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 567899999999987 56766 7777788999999886543
No 219
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.73 E-value=2.5e-05 Score=77.98 Aligned_cols=154 Identities=12% Similarity=-0.027 Sum_probs=88.4
Q ss_pred cccEEEeccCcC----cc-----cccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhh
Q 037562 23 EVKISEAYNCYR----LE-----NILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIA 93 (670)
Q Consensus 23 ~L~~L~i~~c~~----l~-----~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~ 93 (670)
+|+.|.|.+... +. .+. .....+|+|+.|.+.+|..+ .+++ ...++|++|++..|. +..-. ...+
T Consensus 140 ~L~~L~l~~~~~e~~~is~~~~~~L~-~ll~~~P~L~~L~L~g~~~l-~l~~--~~~~~L~~L~L~~~~-l~~~~-l~~l 213 (362)
T 2ra8_A 140 HFEGLFWGDIDFEEQEISWIEQVDLS-PVLDAMPLLNNLKIKGTNNL-SIGK--KPRPNLKSLEIISGG-LPDSV-VEDI 213 (362)
T ss_dssp TCSEEEECCCCTTTCCGGGCBCCBCH-HHHHTCTTCCEEEEECCBTC-BCCS--CBCTTCSEEEEECSB-CCHHH-HHHH
T ss_pred hhhheeecCcchhhcccccccccCHH-HHHhcCCCCcEEEEeCCCCc-eecc--ccCCCCcEEEEecCC-CChHH-HHHH
Confidence 788888864311 10 011 11246789999999888544 3333 237899999998764 32210 0112
Q ss_pred --hcccccceecccccccc-------ceeccccccccccccccccccccccccccccccccccC-CcccCCCCccEEeEe
Q 037562 94 --KTLVRLRYMEIESCDKI-------TEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSG-NCAFTFPSLEILVVN 163 (670)
Q Consensus 94 --~~l~~L~~L~i~~c~~l-------~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~~~L~~L~i~ 163 (670)
..+|+|++|+++.+.+. +.+- .......||+|+.|.+.+|.--...... .....+|+|+.|+++
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~------~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs 287 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFR------PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTG------GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHH------HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC
Confidence 26899999988643221 1110 0011135899999999886533211110 012357899999997
Q ss_pred cCCCccc-----cccCCcCCCCccceeeeec
Q 037562 164 YCPNMKI-----FSGGELSTPNLHKVQLSRW 189 (670)
Q Consensus 164 ~C~~l~~-----~p~~~~~~~~L~~l~i~~~ 189 (670)
.+ .+.. ++.++..+++|+.|+++.+
T Consensus 288 ~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 288 AG-VLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp SS-CCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CC-CCChHHHHHHHhhcccCCcceEEECCCC
Confidence 54 4542 4555556789999988543
No 220
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.69 E-value=0.00021 Score=63.53 Aligned_cols=59 Identities=15% Similarity=0.203 Sum_probs=28.5
Q ss_pred CCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhcccccceeccccc
Q 037562 46 MNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESC 107 (670)
Q Consensus 46 ~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 107 (670)
+++|+.|+++++. +..+++. +..+++|++|+++++ +++.+ ++..+..+++|++|+++++
T Consensus 27 ~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 27 PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSL-PDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSS
T ss_pred CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEe-ChhHccCCCccCEEECCCC
Confidence 3566666666543 4444432 244556666666555 33332 1122344555555555544
No 221
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.66 E-value=3.8e-06 Score=88.05 Aligned_cols=83 Identities=14% Similarity=0.124 Sum_probs=46.9
Q ss_pred cccEEEeccCcCccccc----ccccccCCCCcEEEEecCCCCccccC-----C-Cccccccceeeeccccccccccc---
Q 037562 23 EVKISEAYNCYRLENIL----IEESSVMNNLVILCVHCCDHLINLVP-----S-STSFQNLTNLVVSHCKRLKIVLT--- 89 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~----~~~~~~~~~L~~L~i~~c~~l~~~~~-----~-~~~~~~L~~L~i~~c~~l~~l~~--- 89 (670)
+|++|++++|. ++... ......+++|++|++++|. +..... . ....++|++|++++| ++.....
T Consensus 86 ~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l 162 (461)
T 1z7x_W 86 KIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPL 162 (461)
T ss_dssp CCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHH
T ss_pred ceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHH
Confidence 58888888884 44211 2223567788888888775 432111 0 112346788888777 3332110
Q ss_pred chhhhcccccceecccccc
Q 037562 90 SSIAKTLVRLRYMEIESCD 108 (670)
Q Consensus 90 ~~~~~~l~~L~~L~i~~c~ 108 (670)
+..+..+++|++|++++|.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHHHCTTCCEEECCSSB
T ss_pred HHHHhhCCCCCEEECcCCC
Confidence 1234456777777777665
No 222
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.65 E-value=0.00019 Score=64.82 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=21.1
Q ss_pred CCCCccEEeEecCCCcccc-ccCCcCCCCccceeeee
Q 037562 153 TFPSLEILVVNYCPNMKIF-SGGELSTPNLHKVQLSR 188 (670)
Q Consensus 153 ~~~~L~~L~i~~C~~l~~~-p~~~~~~~~L~~l~i~~ 188 (670)
.+++|+.|+++++. +..+ |..+..+++|+.|++++
T Consensus 100 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 100 GLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp TCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTT
T ss_pred CCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCC
Confidence 45667777776653 3433 44555567777777643
No 223
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.64 E-value=5e-05 Score=83.82 Aligned_cols=115 Identities=17% Similarity=0.124 Sum_probs=87.6
Q ss_pred cccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceeccccccccc
Q 037562 43 SSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQ 122 (670)
Q Consensus 43 ~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~ 122 (670)
...+++|+.|+++++. +..++.....+++|++|+++++ +++.+ +..+..|++|++|+++++. ++.++.
T Consensus 220 ~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N-~l~~l--p~~~~~l~~L~~L~Ls~N~-l~~lp~------- 287 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGN-SLTEL--PAEIKNLSNLRVLDLSHNR-LTSLPA------- 287 (727)
T ss_dssp --CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTS-CCSCC--CGGGGGGTTCCEEECTTSC-CSSCCS-------
T ss_pred hccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCC-cCccc--ChhhhCCCCCCEEeCcCCc-CCccCh-------
Confidence 4678899999999886 5578877778999999999998 55554 3556889999999999986 545532
Q ss_pred cccccccccccccccccccccccccCCcccCCCCccEEeEecCCCcccccc
Q 037562 123 DEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSG 173 (670)
Q Consensus 123 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~ 173 (670)
....+++|+.|.|.++ .++.++.. ...+++|+.|++.+++--..+|.
T Consensus 288 -~~~~l~~L~~L~L~~N-~l~~lp~~--~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 288 -ELGSCFQLKYFYFFDN-MVTTLPWE--FGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp -SGGGGTTCSEEECCSS-CCCCCCSS--TTSCTTCCCEECTTSCCCSHHHH
T ss_pred -hhcCCCCCCEEECCCC-CCCccChh--hhcCCCccEEeCCCCccCCCChH
Confidence 3356899999999987 57777663 66789999999999864333443
No 224
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=97.64 E-value=0.015 Score=67.40 Aligned_cols=350 Identities=10% Similarity=0.085 Sum_probs=182.5
Q ss_pred HHHHhc-CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHH-hhcCCCCHHHHHHHHHHHHHHcCCC--hh---
Q 037562 243 MVDGVW-SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVE-FLMRQDYPQLQFKAAWALTNIASGT--SE--- 315 (670)
Q Consensus 243 l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~-ll~~~~~~~v~~~a~~~L~~l~~~~--~~--- 315 (670)
+.+.+. .++.+++..++.++....... + ...+.+...++.+.+ ++. + ++++..|+.+|..+.... +.
T Consensus 199 ~~~~l~~~~~~~~~~~aL~~l~~~l~wi--~-~~~~~~~~ll~~l~~~~l~--~-~~~~~~a~~~L~~i~~~~~~~~~~~ 272 (1049)
T 3m1i_C 199 CFQVLEQGSSSSLIVATLESLLRYLHWI--P-YRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDNDL 272 (1049)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHTTTS--C-THHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHHCCCCTTCHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhhC--C-HHHHhhhhHHHHHHHHhCC--C-HhHHHHHHHHHHHHHhCCCCcchhh
Confidence 334443 355788999999998876642 2 344566677777773 443 4 799999999999988632 21
Q ss_pred hHHHHHh--CCChHHHHH-h-------------hCCCCHHHHHHHHHHHHHhhC-------CCchhHHHHHhcCChHHHH
Q 037562 316 NTKVVID--HGAVPIFVK-L-------------LASPSVDVRKQTVWALGNVAG-------DSPRCRDLVLSQGALIPLL 372 (670)
Q Consensus 316 ~~~~i~~--~~~i~~L~~-l-------------L~~~~~~v~~~a~~~L~~l~~-------~~~~~~~~i~~~~~i~~Ll 372 (670)
....+.. .+++..+.. + -.+.+.+.....+..+..+.. ..+..+..+. ..++.++
T Consensus 273 ~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~--~~l~~ll 350 (1049)
T 3m1i_C 273 IKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLI 350 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHH--HHHHHHH
Confidence 1111110 112222211 1 112344444444544443321 1111122211 1345555
Q ss_pred HHhcccCChhHHHHHHHHHHhhhc----CCCCC--ChhhhhhhHHHHHHhhccC-------------------Ch---hH
Q 037562 373 AELNENANLSMLRTATWTLFNFCR----GKPQP--PFNQVRPALPVLAQLIRSN-------------------DE---EV 424 (670)
Q Consensus 373 ~~l~~~~~~~~~~~a~~~L~~l~~----~~~~~--~~~~~~~~i~~L~~lL~~~-------------------~~---~v 424 (670)
... ...+.++...++..+..++. ..... .......+++.++..+..+ |. ..
T Consensus 351 ~~~-~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~ 429 (1049)
T 3m1i_C 351 QLS-KIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQL 429 (1049)
T ss_dssp HHH-TSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHH
T ss_pred HHH-cCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHH
Confidence 554 45577888888877777776 32111 1122244455555544211 10 22
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcC--CCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhc
Q 037562 425 LTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLG--HSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLV 502 (670)
Q Consensus 425 ~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~ 502 (670)
+..+..+|..++.......-. -+.+.+...+. ..++..++.|+++++.++.........-.-..+++.+..+..
T Consensus 430 ~~~~~~~L~~l~~~~~~~~l~----~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~ 505 (1049)
T 3m1i_C 430 YKSEREVLVYLTHLNVIDTEE----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTV 505 (1049)
T ss_dssp HHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCHHHHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHh
Confidence 334445555555322221111 12344444554 356788999999999998654322111111224444544332
Q ss_pred c----CCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHH-------
Q 037562 503 H----NHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQI------- 571 (670)
Q Consensus 503 ~----~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~------- 571 (670)
. .+.+.++..++|+++.++.--......+. .+++.++..+.++++.|+..|+.++.+++..+.....
T Consensus 506 ~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~--~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~ 583 (1049)
T 3m1i_C 506 KKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRES 583 (1049)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH--HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCS
T ss_pred hhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Confidence 1 11455666789999987641111111121 3566777788888899999999999999985332211
Q ss_pred -HHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhh
Q 037562 572 -KHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVG 609 (670)
Q Consensus 572 -~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~ 609 (670)
.++ ..++..+..++..-+.+-.....+++..++...
T Consensus 584 ~p~~--~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~ 620 (1049)
T 3m1i_C 584 EPFI--QTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1049)
T ss_dssp SCHH--HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred CcHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence 111 113333444455555555566777777776543
No 225
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=97.63 E-value=0.0086 Score=68.22 Aligned_cols=358 Identities=10% Similarity=0.090 Sum_probs=194.3
Q ss_pred hccHHHHHHHhcCCChHHHHHHHHHHHHHhcC----CCC--Cc-HH-----HHHH--cCCHHHHHHhhcCCCCHHHHHHH
Q 037562 237 LEILPAMVDGVWSDDNSLQLEATTLFINLLSF----DRS--PP-ID-----EVIQ--SGVVPRFVEFLMRQDYPQLQFKA 302 (670)
Q Consensus 237 ~~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~----~~~--~~-~~-----~~~~--~g~l~~L~~ll~~~~~~~v~~~a 302 (670)
.+.++.+++.++++ +.....++..|..+... .+. .. +. .+.. ..+++.+..++.+...+++...+
T Consensus 137 p~~l~dL~~~l~~~-~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~~~~~I~~ll~~iL~~~~~~~l~~~~ 215 (1023)
T 4hat_C 137 PEFIPELIGSSSSS-VNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGASSSLIVAT 215 (1023)
T ss_dssp TTHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred hHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 45577888877643 34455555666554332 101 11 11 1111 12344444555444337888899
Q ss_pred HHHHHHHcCCChhhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCC---c--hhHHHHHhc--CChHHH---
Q 037562 303 AWALTNIASGTSENTKVVIDHGAVPIFV-KLLASPSVDVRKQTVWALGNVAGDS---P--RCRDLVLSQ--GALIPL--- 371 (670)
Q Consensus 303 ~~~L~~l~~~~~~~~~~i~~~~~i~~L~-~lL~~~~~~v~~~a~~~L~~l~~~~---~--~~~~~i~~~--~~i~~L--- 371 (670)
+.++..... --....+++.+.++.+. .++. ++.++..|+.+|..+.... + ...+.+... +.+..+
T Consensus 216 L~~l~s~l~--WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~lf~~~l~~l~~~ 291 (1023)
T 4hat_C 216 LESLLRYLH--WIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATS 291 (1023)
T ss_dssp HHHHHHHTT--TSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--hCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999876 22345677888999999 8874 6789999999999998632 2 122111110 011111
Q ss_pred --------HHHhc--ccCChhHHHHHHHHHHhhhcCCCC-----CC-hhhhhhhHHHHHHhhccCChhHHHHHHHHHHHh
Q 037562 372 --------LAELN--ENANLSMLRTATWTLFNFCRGKPQ-----PP-FNQVRPALPVLAQLIRSNDEEVLTDACWALSYL 435 (670)
Q Consensus 372 --------l~~l~--~~~~~~~~~~a~~~L~~l~~~~~~-----~~-~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l 435 (670)
-..+. +..|.+..+..+..+..+...... .. ......++..++..-..++.++...++..-..+
T Consensus 292 i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~Ll~~~~~~d~ei~~~tl~FW~~L 371 (1023)
T 4hat_C 292 VMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNL 371 (1023)
T ss_dssp TCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred hCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Confidence 11111 223556666677776655543311 00 111122344555555567788877776655455
Q ss_pred ccC---C---hHHHHHHHHcCCHHHHHHhcCCCC---------ccc-h--------hHHH----HHHHHhhcCCc-hhhH
Q 037562 436 SDG---T---NDKVQAVIEAGVYPRLVELLGHSS---------SSV-L--------TPAL----RTIRNIVKGDD-FQTQ 486 (670)
Q Consensus 436 ~~~---~---~~~~~~~~~~~~i~~L~~lL~~~~---------~~v-~--------~~a~----~~L~~l~~~~~-~~~~ 486 (670)
+.. . ......++. .+++.++..+..+. .+. + .... .+|..++.-.. +...
T Consensus 372 ~~~l~~e~~~~~~~~~~~~-~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~~f~~~Rd~L~~l~~l~~~~~~~ 450 (1023)
T 4hat_C 372 VADLFYEPLKKHIYEEICS-QLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTEE 450 (1023)
T ss_dssp HHHHTTSTTTGGGGHHHHH-HHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHhchHHHHHHHHHHH-HHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence 421 0 111121222 45666666666543 011 0 0111 22222221111 1111
Q ss_pred HHHhCCChHHHHHhhccC-CchhHHHHHHHHHHHhhcCCHHH-HHHHHhcCChHHHHHHhhc-----CChhHHHHHHHHH
Q 037562 487 CIINCGALPYFLDMLVHN-HEESIKKEVSWIISNITCGNREQ-IQAVIDSGLIGPIVNLLQN-----TEFDTKKEAAWAI 559 (670)
Q Consensus 487 ~l~~~~~~~~L~~~l~~~-~~~~v~~~a~~~L~~l~~~~~~~-~~~l~~~~~i~~L~~ll~~-----~~~~v~~~a~~aL 559 (670)
-.++.+.+.+.+. .+...++.++|+++.++.+..+. ...++ ..+++.|+.+... ....++..+++++
T Consensus 451 -----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~l 524 (1023)
T 4hat_C 451 -----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLCVKKRGKDNKAVVASDIMYVV 524 (1023)
T ss_dssp -----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHH-HHHHHHHHHhhhccccCcchHHHHHHHHHHH
Confidence 1233344444432 27889999999999998753332 22222 2377888888763 2345667788999
Q ss_pred HHhcCCC--CHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhh
Q 037562 560 SNATKFG--THEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVA 611 (670)
Q Consensus 560 ~~l~~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~ 611 (670)
+..+..- .++..+. ++..|.+.+.+.++.+...|++++.++.+.+..
T Consensus 525 Gry~~wl~~~~~~L~~-----vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~ 573 (1023)
T 4hat_C 525 GQYPRFLKAHWNFLRT-----VILKLFEFMHETHEGVQDMACDTFIKIVQKCKY 573 (1023)
T ss_dssp HTCHHHHHHCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHhccHHHHHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 8876531 2333222 566677777778899999999999999987553
No 226
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.59 E-value=3.4e-06 Score=76.92 Aligned_cols=124 Identities=13% Similarity=0.122 Sum_probs=88.8
Q ss_pred CCcEEEEecC-CCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceeccccccccccccc
Q 037562 48 NLVILCVHCC-DHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVI 126 (670)
Q Consensus 48 ~L~~L~i~~c-~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~ 126 (670)
.|+.+.+.+. +.++.++..+..+++|+.|+++++ .++.+ +.+..+++|++|++++|. ++.++ ....
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l---~~~~~l~~L~~L~l~~n~-l~~l~--------~~~~ 90 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKI---SSLSGMENLRILSLGRNL-IKKIE--------NLDA 90 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCC---CCHHHHTTCCEEEEEEEE-ECSCS--------SHHH
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCccc---cccccCCCCCEEECCCCC-ccccc--------chhh
Confidence 4566666554 345556656677899999999988 46664 367789999999999884 44442 1223
Q ss_pred cccccccccccccccccccccCCcccCCCCccEEeEecCCCcccccc--CCcCCCCccceeeeec
Q 037562 127 TFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSG--GELSTPNLHKVQLSRW 189 (670)
Q Consensus 127 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~--~~~~~~~L~~l~i~~~ 189 (670)
.+|+|+.|.++++ .++.++. ...+++|+.|++.++. +..+|. ....+++|+.|++++.
T Consensus 91 ~~~~L~~L~L~~N-~l~~l~~---~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 91 VADTLEELWISYN-QIASLSG---IEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HHHHCSEEEEEEE-ECCCHHH---HHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSC
T ss_pred cCCcCCEEECcCC-cCCcCCc---cccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCC
Confidence 4689999999987 5666542 4467899999999884 555554 4556899999988654
No 227
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=97.57 E-value=0.019 Score=65.99 Aligned_cols=350 Identities=11% Similarity=0.068 Sum_probs=184.8
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHH----H--cCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC
Q 037562 239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVI----Q--SGVVPRFVEFLMRQDYPQLQFKAAWALTNIASG 312 (670)
Q Consensus 239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~----~--~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~ 312 (670)
.++.+++.+ ++++.+..|+.++..+............+ . .+..+.+...+...+ .+.....++.+..++..
T Consensus 242 ll~~l~~~l--~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d-~~~~~~~~~l~~~~~~~ 318 (963)
T 2x19_B 242 LIQAAFAAL--QDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGD-METSHGICRIAVALGEN 318 (963)
T ss_dssp HHHHHHHHT--TSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCC-HHHHHHHHHHHHHHHHH
Confidence 356666665 35778899999999998753111111111 1 112223333334455 56666677777776641
Q ss_pred Chhh-------HHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCC--------chhHHHHHh--cCChHH
Q 037562 313 TSEN-------TKVVIDHGAVPIFVKLLAS-----PSVDVRKQTVWALGNVAGDS--------PRCRDLVLS--QGALIP 370 (670)
Q Consensus 313 ~~~~-------~~~i~~~~~i~~L~~lL~~-----~~~~v~~~a~~~L~~l~~~~--------~~~~~~i~~--~~~i~~ 370 (670)
.+.. ...+. .+++.++..... .++.+...++..+..++... +.....+.. ...++.
T Consensus 319 ~~~~l~~~~~~~~~~~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 396 (963)
T 2x19_B 319 HSRALLDQVEHWQSFL--ALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDV 396 (963)
T ss_dssp HHHHHHHCGGGHHHHH--HHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHcCccchHHHH--HHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 1110 11111 345555555554 35566777777766665311 111111110 012344
Q ss_pred HHHHhcccCCh--------------hHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhh----ccCChhHHHHHHHHH
Q 037562 371 LLAELNENANL--------------SMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLI----RSNDEEVLTDACWAL 432 (670)
Q Consensus 371 Ll~~l~~~~~~--------------~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL----~~~~~~v~~~al~~L 432 (670)
++..+....+. +.++.+..+|..++...+ ......+++.+...+ .+.+...++.++.++
T Consensus 397 ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al 473 (963)
T 2x19_B 397 LLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLG---AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGF 473 (963)
T ss_dssp HHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHH
T ss_pred HHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 44444211110 223455556655553321 122233444555555 456778899999999
Q ss_pred HHhccCChHHHHHHHHcCCHHHHHHhc---CCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhH
Q 037562 433 SYLSDGTNDKVQAVIEAGVYPRLVELL---GHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESI 509 (670)
Q Consensus 433 ~~l~~~~~~~~~~~~~~~~i~~L~~lL---~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v 509 (670)
+.++....... ...++.++..+ .++++.++..++++++.++..-..... .+ ..+++.++..+.+ +.|
T Consensus 474 ~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~l-~~vl~~l~~~l~~---~~V 543 (963)
T 2x19_B 474 QSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-MI-NSVLPLVLHALGN---PEL 543 (963)
T ss_dssp HHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-HH-TTTHHHHHHHTTC---GGG
T ss_pred HHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-HH-HHHHHHHHHHhCC---chH
Confidence 99986643211 12233333332 335677999999999999863222222 22 3688888888853 689
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcC--ChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhc
Q 037562 510 KKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNT--EFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLL 587 (670)
Q Consensus 510 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll 587 (670)
+..|++++.+++........... ..++..+..++..+ +.+.+..+..+++.++....++.....++ ..++.+...+
T Consensus 544 ~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~-~l~~~l~~~l 621 (963)
T 2x19_B 544 SVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLH-SLISPYIQQL 621 (963)
T ss_dssp HHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHH
Confidence 99999999999864332111111 12344455555542 56889999999999987543222222222 1444444433
Q ss_pred ----cC-CChHHHH---HHHHHHHHHHHh
Q 037562 588 ----LC-ADPKIVT---VCLEGLENILKV 608 (670)
Q Consensus 588 ----~~-~~~~v~~---~a~~~l~~l~~~ 608 (670)
+. .+++.+. ..+.++..+++.
T Consensus 622 ~~~~~~~~~~~~~~~~~~~l~~l~~i~~~ 650 (963)
T 2x19_B 622 EKLAEEIPNPSNKLAIVHILGLLSNLFTT 650 (963)
T ss_dssp HHHHSSCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 22 2454444 445556555554
No 228
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.56 E-value=0.00017 Score=64.07 Aligned_cols=105 Identities=12% Similarity=0.133 Sum_probs=73.1
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCC-Cccccccceeeecccccccccccchhhhcccccce
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY 101 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~ 101 (670)
+|+.|.+.++. ++.++......+++|++|+++++ .+..+++. +..+++|+.|+++++ +++.+ ++..+..+++|++
T Consensus 29 ~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~L~~ 104 (177)
T 2o6r_A 29 SATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSL-PNGVFDKLTQLKE 104 (177)
T ss_dssp TCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCE
T ss_pred CCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-Ccccc-CHHHhhCCcccCE
Confidence 89999999874 77766554467899999999987 47777665 367899999999987 45554 2234567889999
Q ss_pred eccccccccceecccccccccccccccccccccccccc
Q 037562 102 MEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQM 139 (670)
Q Consensus 102 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 139 (670)
|+++++. ++.++. .....+++|+.|.+.+.
T Consensus 105 L~l~~N~-l~~~~~-------~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 105 LALDTNQ-LKSVPD-------GIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp EECCSSC-CSCCCT-------TTTTTCTTCCEEECCSS
T ss_pred EECcCCc-ceEeCH-------HHhcCCcccCEEEecCC
Confidence 9998873 444321 11123556666666544
No 229
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.49 E-value=0.0003 Score=63.41 Aligned_cols=58 Identities=16% Similarity=0.131 Sum_probs=34.1
Q ss_pred ccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccC-CcCCCCccceeeee
Q 037562 128 FRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGG-ELSTPNLHKVQLSR 188 (670)
Q Consensus 128 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~-~~~~~~L~~l~i~~ 188 (670)
+++|+.|.+++.. ++.+... ....+++|+.|++.++ ++..+|.+ ...+++|+.|++++
T Consensus 77 l~~L~~L~Ls~N~-l~~i~~~-~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 77 MTQLLTLILSYNR-LRCIPPR-TFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp CTTCCEEECCSSC-CCBCCTT-TTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCCCCEEECCCCc-cCEeCHH-HhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCC
Confidence 4555555555432 3333332 2345677888888775 46667665 34577888887753
No 230
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.49 E-value=0.00039 Score=62.64 Aligned_cols=125 Identities=16% Similarity=0.160 Sum_probs=77.8
Q ss_pred cEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCC--Cccccccceeeecccccccccccchhhhccccccee
Q 037562 25 KISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPS--STSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYM 102 (670)
Q Consensus 25 ~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~--~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L 102 (670)
+.+.+++. +++.+|.. ..++|+.|+++++ .+..+++. +..+++|++|+++++ .++.+. +..+..+++|++|
T Consensus 11 ~~l~~s~~-~l~~ip~~---~~~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRD---IPLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIE-PNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTTS-CCSSCCSC---CCTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBC-TTTTTTCTTCCEE
T ss_pred CEEEcCCC-CcCcCccC---CCCCCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcC-HhHcCCcccCCEE
Confidence 45555543 45666642 2348888888877 46666553 567888888888877 344432 2445678888888
Q ss_pred ccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCC
Q 037562 103 EIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCP 166 (670)
Q Consensus 103 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~ 166 (670)
+++++. ++.+.. .....+++|+.|.+++. +++.+... ....+++|+.|++.+.+
T Consensus 84 ~Ls~N~-l~~~~~-------~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 84 QLGENK-IKEISN-------KMFLGLHQLKTLNLYDN-QISCVMPG-SFEHLNSLTSLNLASNP 137 (192)
T ss_dssp ECCSCC-CCEECS-------SSSTTCTTCCEEECCSS-CCCEECTT-SSTTCTTCCEEECTTCC
T ss_pred ECCCCc-CCccCH-------HHhcCCCCCCEEECCCC-cCCeeCHH-HhhcCCCCCEEEeCCCC
Confidence 888764 444321 12234778888888775 34444332 24457888888887654
No 231
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.0037 Score=60.01 Aligned_cols=188 Identities=11% Similarity=0.110 Sum_probs=126.0
Q ss_pred HHHhcCCCCccchhHHHHHHHHhhcCCchhh--HHHH--hCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCC------
Q 037562 455 LVELLGHSSSSVLTPALRTIRNIVKGDDFQT--QCII--NCGALPYFLDMLVHNHEESIKKEVSWIISNITCGN------ 524 (670)
Q Consensus 455 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~--~~l~--~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~------ 524 (670)
+-.-|.+.+|..|..|+..+..+....+... .... -....+.+...+.+. +..+...++.++..++...
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~ 92 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLK 92 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CC
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 5577899999999999999988776443211 1111 113456677788888 9999999999999887521
Q ss_pred HHHHHHHHhcCChHHHHHH-hhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHH
Q 037562 525 REQIQAVIDSGLIGPIVNL-LQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLE 603 (670)
Q Consensus 525 ~~~~~~l~~~~~i~~L~~l-l~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~ 603 (670)
....... -..+++.|+.- +.+....++..|..++..++....+.. . +++.+...+++.+|.++..++..|.
T Consensus 93 ~~~~~~~-~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~--~-----~~e~l~~~l~~Knpkv~~~~l~~l~ 164 (278)
T 4ffb_C 93 NAHNITL-ISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT--Q-----SVELVIPFFEKKLPKLIAAAANCVY 164 (278)
T ss_dssp HHHHHHH-HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH--H-----HHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred cchhHHH-HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH--H-----HHHHHHHHHhccCHHHHHHHHHHHH
Confidence 1111111 23467777764 667788899999888888765422111 1 3566778889999999999999999
Q ss_pred HHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 037562 604 NILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYWS 662 (670)
Q Consensus 604 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~~ 662 (670)
.++........ ....... ..++.+..+.++.+++||..|..++-.+|.
T Consensus 165 ~~l~~fg~~~~------~~k~~l~-----~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 165 ELMAAFGLTNV------NVQTFLP-----ELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHTTTTC------CHHHHHH-----HHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcC------CchhHHH-----HHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 98875432110 1111111 124567778899999999999998877763
No 232
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.38 E-value=0.0031 Score=71.74 Aligned_cols=307 Identities=8% Similarity=-0.013 Sum_probs=167.6
Q ss_pred CCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc--hhHHHHHhcCChH
Q 037562 292 RQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSP--RCRDLVLSQGALI 369 (670)
Q Consensus 292 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~i~~~~~i~ 369 (670)
+.+ +.++..++.++..... --....+++.+.++.+..++.+ ++++..|+.+|..+..... ..+..++..=.+.
T Consensus 204 ~~~-~~l~~~~L~~l~s~i~--wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~ 278 (980)
T 3ibv_A 204 AKN-YGTVGLCLQVYAQWVS--WININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLN 278 (980)
T ss_dssp TTC-HHHHHHHHHHHHHHTT--TSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred cCC-HHHHHHHHHHHHHHHh--hcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHH
Confidence 355 7899999999999887 2234556666788888888864 7999999999999984432 2222222210011
Q ss_pred HHHHHhcc-cCChhHHHHHHHHH-------HhhhcCCCC-CC-------hhhhhhhHHHHHHhhccCChhHHHHHHHHHH
Q 037562 370 PLLAELNE-NANLSMLRTATWTL-------FNFCRGKPQ-PP-------FNQVRPALPVLAQLIRSNDEEVLTDACWALS 433 (670)
Q Consensus 370 ~Ll~~l~~-~~~~~~~~~a~~~L-------~~l~~~~~~-~~-------~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~ 433 (670)
..+..+.. ..|.++.+..+..+ ..+ ...+. .. .....+.++.++.++.+++.++...++..+.
T Consensus 279 ~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~ 357 (980)
T 3ibv_A 279 LFFSKSQEQSTDPNFDEHVAKLINAQGVELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLS 357 (980)
T ss_dssp HHHCC-----CCHHHHHHHHHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHH
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 11221211 45666554333333 233 22221 01 1333678899999999888888777666655
Q ss_pred HhccC---------ChHHHHHHHHcCCHHHHHHhcCCCCc----------------cchhHHHHHHHHhhcCCchhhHHH
Q 037562 434 YLSDG---------TNDKVQAVIEAGVYPRLVELLGHSSS----------------SVLTPALRTIRNIVKGDDFQTQCI 488 (670)
Q Consensus 434 ~l~~~---------~~~~~~~~~~~~~i~~L~~lL~~~~~----------------~v~~~a~~~L~~l~~~~~~~~~~l 488 (670)
.+... -......++. .+++.++..+..++. +.|......+..++.-.++.....
T Consensus 358 ~~l~~~~~~~~~~~~~~~~~~~l~-~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~ 436 (980)
T 3ibv_A 358 DLLVSLRKESSSKELSASLKEFLK-SLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSY 436 (980)
T ss_dssp HHHHHHHHHTTSCCCCHHHHHHHH-HHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHhccccccccHHHHHHHH-HHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 54421 0122222222 455566666654211 133333322222222122211110
Q ss_pred HhCCChHHHHHhhc---cCCchhHHHHHHHHHHHhhcCCHHHHHHH-HhcC----ChHHHHHHhh-----cCChhHHHHH
Q 037562 489 INCGALPYFLDMLV---HNHEESIKKEVSWIISNITCGNREQIQAV-IDSG----LIGPIVNLLQ-----NTEFDTKKEA 555 (670)
Q Consensus 489 ~~~~~~~~L~~~l~---~~~~~~v~~~a~~~L~~l~~~~~~~~~~l-~~~~----~i~~L~~ll~-----~~~~~v~~~a 555 (670)
+-.-+.+.+.+.+. +. +...++.|..+++.++.+........ -... +++.+..++. .+.+.|+..+
T Consensus 437 ~~~~i~~~l~~~l~~~~~~-~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~ 515 (980)
T 3ibv_A 437 MYSAITSSLSTAATLSPEN-SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLY 515 (980)
T ss_dssp HHHHHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 00011222223332 23 67788999999999987533211110 0111 3444555544 5678999999
Q ss_pred HHHHHHhcCCC--CHHHHHHHHHcCCcHHHHh--hccCCChHHHHHHHHHHHHHHHhhhh
Q 037562 556 AWAISNATKFG--THEQIKHLVREGCVKPLCD--LLLCADPKIVTVCLEGLENILKVGVA 611 (670)
Q Consensus 556 ~~aL~~l~~~~--~~~~~~~l~~~~~i~~L~~--ll~~~~~~v~~~a~~~l~~l~~~~~~ 611 (670)
+++++..+..- .++.... +++.+++ -+.++++.|+.+|..++.++++....
T Consensus 516 ~~~l~rys~~~~~~~~~l~~-----~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~ 570 (980)
T 3ibv_A 516 MEILVRYASFFDYESAAIPA-----LIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK 570 (980)
T ss_dssp HHHHHHTGGGGGTCCTTHHH-----HHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCchhHHH-----HHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence 99999987642 1221111 3444444 45567889999999999999987654
No 233
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.36 E-value=4.1e-05 Score=77.16 Aligned_cols=83 Identities=13% Similarity=0.003 Sum_probs=39.6
Q ss_pred cccEEEeccCcCcccccc----cccccCC-CCcEEEEecCCCCccccC-CCcc-----ccccceeeecccccccccccch
Q 037562 23 EVKISEAYNCYRLENILI----EESSVMN-NLVILCVHCCDHLINLVP-SSTS-----FQNLTNLVVSHCKRLKIVLTSS 91 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~----~~~~~~~-~L~~L~i~~c~~l~~~~~-~~~~-----~~~L~~L~i~~c~~l~~l~~~~ 91 (670)
+|++|++++|. ++..+. .....++ +|++|++++|. +....+ .... +++|++|++++|. +....+..
T Consensus 23 ~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~ 99 (362)
T 3goz_A 23 GVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDE 99 (362)
T ss_dssp TCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHH
T ss_pred CceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHH
Confidence 46777776664 444432 2223455 67777776663 333211 1111 2566666666664 33221110
Q ss_pred ---hhhcc-cccceecccccc
Q 037562 92 ---IAKTL-VRLRYMEIESCD 108 (670)
Q Consensus 92 ---~~~~l-~~L~~L~i~~c~ 108 (670)
.+..+ ++|++|++++|.
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~ 120 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWND 120 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSC
T ss_pred HHHHHHhCCCCccEEECcCCc
Confidence 12223 566666666654
No 234
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=97.32 E-value=4.7e-05 Score=76.71 Aligned_cols=84 Identities=13% Similarity=0.127 Sum_probs=47.1
Q ss_pred ccccEEEeccCcCcccccccc----cccC-CCCcEEEEecCCCCccccCC-----Ccc-ccccceeeeccccccccccc-
Q 037562 22 MEVKISEAYNCYRLENILIEE----SSVM-NNLVILCVHCCDHLINLVPS-----STS-FQNLTNLVVSHCKRLKIVLT- 89 (670)
Q Consensus 22 ~~L~~L~i~~c~~l~~~~~~~----~~~~-~~L~~L~i~~c~~l~~~~~~-----~~~-~~~L~~L~i~~c~~l~~l~~- 89 (670)
.+|++|++++|. ++...... ...+ ++|++|++++|. +...+.. ... .++|++|++++|. +.....
T Consensus 80 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~ 156 (362)
T 3goz_A 80 ANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSD 156 (362)
T ss_dssp TTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHH
T ss_pred CCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHH
Confidence 478889888885 44333211 1233 788888888875 4333221 111 2478888888773 332110
Q ss_pred --chhhhccc-ccceecccccc
Q 037562 90 --SSIAKTLV-RLRYMEIESCD 108 (670)
Q Consensus 90 --~~~~~~l~-~L~~L~i~~c~ 108 (670)
...+..++ +|++|++++|.
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n~ 178 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGNN 178 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSC
T ss_pred HHHHHHhcCCccccEeeecCCC
Confidence 12233444 78888887774
No 235
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.26 E-value=0.0013 Score=59.23 Aligned_cols=125 Identities=13% Similarity=0.151 Sum_probs=87.9
Q ss_pred cEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceecc
Q 037562 25 KISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEI 104 (670)
Q Consensus 25 ~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i 104 (670)
+.+.+++. +++.+|.. ..++|+.|++++.. +..++..+..+++|+.|+++++ .++.+ ++..+..+++|++|++
T Consensus 13 ~~l~~~~~-~l~~ip~~---~~~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N-~i~~i-~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKG---IPRDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNN-RISTL-SNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTTS-CCSSCCSC---CCTTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEEC
T ss_pred CEEEcCCC-CCCcCCCC---CCCCCCEEECCCCc-CchhHHHhhcccCCCEEECCCC-cCCEe-CHhHccCCCCCCEEEC
Confidence 44554443 47777743 35799999998874 6677777778899999999987 45554 2344678999999999
Q ss_pred ccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCccEEeEecCC
Q 037562 105 ESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCP 166 (670)
Q Consensus 105 ~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~ 166 (670)
+++. ++.+.. .....+++|+.|.+.+. .++.++.+ ....+++|+.|++.+.|
T Consensus 86 s~N~-l~~i~~-------~~f~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 86 SYNR-LRCIPP-------RTFDGLKSLRLLSLHGN-DISVVPEG-AFNDLSALSHLAIGANP 137 (193)
T ss_dssp CSSC-CCBCCT-------TTTTTCTTCCEEECCSS-CCCBCCTT-TTTTCTTCCEEECCSSC
T ss_pred CCCc-cCEeCH-------HHhCCCCCCCEEECCCC-CCCeeChh-hhhcCccccEEEeCCCC
Confidence 9875 444431 12345789999999885 46666553 24467899999887643
No 236
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.20 E-value=0.0036 Score=58.35 Aligned_cols=181 Identities=13% Similarity=0.069 Sum_probs=118.8
Q ss_pred HHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhc----CCchhhHHH
Q 037562 413 LAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVK----GDDFQTQCI 488 (670)
Q Consensus 413 L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~----~~~~~~~~l 488 (670)
+...+-+.|..-+..++..|.......+......++ .+++.+.-.+.+++..+...++.+|..+.. ........
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lD-ll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~- 128 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQE- 128 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHH-HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHH-
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHH-
Confidence 444555566666666776666654333322221111 123333333446788888888888877642 11111111
Q ss_pred HhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc-CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCC
Q 037562 489 INCGALPYFLDMLVHNHEESIKKEVSWIISNITC-GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGT 567 (670)
Q Consensus 489 ~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 567 (670)
-..-++|.|+.-+.+. ...+|..+-.++..+.. ..+. .+++.+.+-+.+.+..+|..++..+..+.....
T Consensus 129 ea~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G 199 (266)
T 2of3_A 129 EVSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITNAG 199 (266)
T ss_dssp HHHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence 0123689999999888 88899998888877754 2222 356677888889999999999999999875321
Q ss_pred HHHHHHHHHcCCc---HHHHhhccCCChHHHHHHHHHHHHHHHhhh
Q 037562 568 HEQIKHLVREGCV---KPLCDLLLCADPKIVTVCLEGLENILKVGV 610 (670)
Q Consensus 568 ~~~~~~l~~~~~i---~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~ 610 (670)
.. ...++ +.+..++.+.|..||.+|+.++..++....
T Consensus 200 ~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~G 239 (266)
T 2of3_A 200 IS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEG 239 (266)
T ss_dssp SG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHT
T ss_pred CC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 11 23478 999999999999999999999998876543
No 237
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.20 E-value=8.3e-05 Score=69.03 Aligned_cols=185 Identities=17% Similarity=0.121 Sum_probs=128.6
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCC
Q 037562 288 EFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGA 367 (670)
Q Consensus 288 ~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~ 367 (670)
.++.+++ +.+|..++..+ ....+..++.++++.||..++..|.
T Consensus 57 ~ll~d~~-~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L~------------------ 99 (244)
T 1lrv_A 57 QYLADPF-WERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRLP------------------ 99 (244)
T ss_dssp GGTTCSS-HHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTSC------------------
T ss_pred HHhcCCC-HHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHCC------------------
Confidence 4557777 89999988843 1234777889999999998886421
Q ss_pred hHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHH
Q 037562 368 LIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVI 447 (670)
Q Consensus 368 i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~ 447 (670)
.+.+..++ .+.+..|+..++..+ . .+.+..+++++++.|+..++.. +.
T Consensus 100 ~~~L~~ll-~D~d~~VR~~aA~~l---~--------------~~~L~~L~~D~d~~VR~~aA~~---l~----------- 147 (244)
T 1lrv_A 100 REQLSALM-FDEDREVRITVADRL---P--------------LEQLEQMAADRDYLVRAYVVQR---IP----------- 147 (244)
T ss_dssp SGGGGGTT-TCSCHHHHHHHHHHS---C--------------TGGGGGGTTCSSHHHHHHHHHH---SC-----------
T ss_pred HHHHHHHH-cCCCHHHHHHHHHhC---C--------------HHHHHHHHcCCCHHHHHHHHHh---cC-----------
Confidence 12234444 788889998887743 1 0235566788899999888863 21
Q ss_pred HcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHH
Q 037562 448 EAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQ 527 (670)
Q Consensus 448 ~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~ 527 (670)
.+.+..+++++++.||..++..+ ..+.+..+++++ ++.||..++..+
T Consensus 148 ----~~~l~~l~~D~d~~VR~~aa~~l------------------~~~ll~~ll~D~-d~~VR~aaa~~l---------- 194 (244)
T 1lrv_A 148 ----PGRLFRFMRDEDRQVRKLVAKRL------------------PEESLGLMTQDP-EPEVRRIVASRL---------- 194 (244)
T ss_dssp ----GGGGGGTTTCSCHHHHHHHHHHS------------------CGGGGGGSTTCS-SHHHHHHHHHHC----------
T ss_pred ----HHHHHHHHcCCCHHHHHHHHHcC------------------CHHHHHHHHcCC-CHHHHHHHHHhC----------
Confidence 12345677888889999887751 113344667777 999999888652
Q ss_pred HHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHH
Q 037562 528 IQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGL 602 (670)
Q Consensus 528 ~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l 602 (670)
..+.|..++.++++.||..++..+. .+.|..+ +++++.|+..+...|
T Consensus 195 --------~~~~L~~Ll~D~d~~VR~~aa~~l~-------------------~~~L~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 195 --------RGDDLLELLHDPDWTVRLAAVEHAS-------------------LEALREL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp --------CGGGGGGGGGCSSHHHHHHHHHHSC-------------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred --------CHHHHHHHHcCCCHHHHHHHHHcCC-------------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence 1245677788999999999998753 2455556 889999998886654
No 238
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=97.17 E-value=0.00011 Score=68.23 Aligned_cols=184 Identities=12% Similarity=0.058 Sum_probs=128.3
Q ss_pred hcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCCh
Q 037562 247 VWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAV 326 (670)
Q Consensus 247 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i 326 (670)
++++++.++..|+..+ . ...+..++++++ +.||..++..+ . .
T Consensus 59 l~d~~~~VR~~AA~~l--------~-----------~~~l~~L~~D~~-~~VR~~aA~~L---~---------------~ 100 (244)
T 1lrv_A 59 LADPFWERRAIAVRYS--------P-----------VEALTPLIRDSD-EVVRRAVAYRL---P---------------R 100 (244)
T ss_dssp TTCSSHHHHHHHHTTS--------C-----------GGGGGGGTTCSS-HHHHHHHHTTS---C---------------S
T ss_pred hcCCCHHHHHHHHHhC--------C-----------HHHHHHHccCcC-HHHHHHHHHHC---C---------------H
Confidence 4688899998888743 1 223677788888 89999998642 1 1
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhh
Q 037562 327 PIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQV 406 (670)
Q Consensus 327 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 406 (670)
+.+..++.+++..||..++..+ . + ..+. .+.++.+..|+..++..+ .
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~l---~---~------------~~L~-~L~~D~d~~VR~~aA~~l---~----------- 147 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADRL---P---L------------EQLE-QMAADRDYLVRAYVVQRI---P----------- 147 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHHS---C---T------------GGGG-GGTTCSSHHHHHHHHHHS---C-----------
T ss_pred HHHHHHHcCCCHHHHHHHHHhC---C---H------------HHHH-HHHcCCCHHHHHHHHHhc---C-----------
Confidence 4577889999999999888742 1 1 1122 333788899999888632 1
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhH
Q 037562 407 RPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQ 486 (670)
Q Consensus 407 ~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 486 (670)
.+.+..+++++++.|+..++.. +. .+.+..++.++++.||..++..+
T Consensus 148 ---~~~l~~l~~D~d~~VR~~aa~~---l~---------------~~ll~~ll~D~d~~VR~aaa~~l------------ 194 (244)
T 1lrv_A 148 ---PGRLFRFMRDEDRQVRKLVAKR---LP---------------EESLGLMTQDPEPEVRRIVASRL------------ 194 (244)
T ss_dssp ---GGGGGGTTTCSCHHHHHHHHHH---SC---------------GGGGGGSTTCSSHHHHHHHHHHC------------
T ss_pred ---HHHHHHHHcCCCHHHHHHHHHc---CC---------------HHHHHHHHcCCCHHHHHHHHHhC------------
Confidence 1234567778899999888775 11 13455778889999999888652
Q ss_pred HHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHH
Q 037562 487 CIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAIS 560 (670)
Q Consensus 487 ~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 560 (670)
..+.|..++.+. +..||..++..++ .+.+..+ +++++.|+..|...|+
T Consensus 195 ------~~~~L~~Ll~D~-d~~VR~~aa~~l~------------------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 195 ------RGDDLLELLHDP-DWTVRLAAVEHAS------------------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp ------CGGGGGGGGGCS-SHHHHHHHHHHSC------------------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred ------CHHHHHHHHcCC-CHHHHHHHHHcCC------------------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 124567778888 9999999888753 2344445 8888999998876543
No 239
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.0085 Score=57.40 Aligned_cols=192 Identities=14% Similarity=0.102 Sum_probs=124.8
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcH-HHHH--HcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCh
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPI-DEVI--QSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTS 314 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~--~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~ 314 (670)
..+| +-+.+.+.+...|.+|+..+.++......... .... -....+.+-..+.+.+ ..++..++.++..++....
T Consensus 10 sklp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN-~~v~~~al~~l~~~~~~~~ 87 (278)
T 4ffb_C 10 TTLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSN-VVAQEQAIVALNSLIDAFA 87 (278)
T ss_dssp -CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSS-HHHHHHHHHHHHHHHTTCC
T ss_pred hcCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHhh
Confidence 3455 66788999999999999999988765321111 1111 1224556667777777 8999999999998875221
Q ss_pred -----hhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHH
Q 037562 315 -----ENTKVVIDHGAVPIFVK-LLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTAT 388 (670)
Q Consensus 315 -----~~~~~i~~~~~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~ 388 (670)
.......-..+++.++. .+.+....++..+..++..++...... .. .++.++..+ .+.++.++..++
T Consensus 88 ~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l-~~Knpkv~~~~l 160 (278)
T 4ffb_C 88 SSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFF-EKKLPKLIAAAA 160 (278)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGG-GCSCHHHHHHHH
T ss_pred hhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHH-hccCHHHHHHHH
Confidence 11111112245677776 478888999999998888776332211 11 134444555 677889999888
Q ss_pred HHHHhhhcCCCC--C-ChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccC
Q 037562 389 WTLFNFCRGKPQ--P-PFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDG 438 (670)
Q Consensus 389 ~~L~~l~~~~~~--~-~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~ 438 (670)
..|..+...... . .......+++.+.+++.+.|+.||..|..++..+-..
T Consensus 161 ~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 161 NCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 888877654211 1 1223355677788899999999999999999887643
No 240
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=97.10 E-value=0.0047 Score=70.21 Aligned_cols=303 Identities=10% Similarity=0.024 Sum_probs=164.4
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC--hhhHHHHHhCCCh
Q 037562 249 SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGT--SENTKVVIDHGAV 326 (670)
Q Consensus 249 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~i~~~~~i 326 (670)
+.++++...++.++...... -....++..+.++.+.+++.+ ++++..|+.+|..+.... ++.+..++..=.+
T Consensus 204 ~~~~~l~~~~L~~l~s~i~w---i~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L 277 (980)
T 3ibv_A 204 AKNYGTVGLCLQVYAQWVSW---ININLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNL 277 (980)
T ss_dssp TTCHHHHHHHHHHHHHHTTT---SCHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhh---cCHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence 46788889999999888764 345677777889989988875 799999999999988633 3333333322111
Q ss_pred HHHHHhhC--CCCHHHHHHHHHHHHHhh------CCCc-----hhHHHH--HhcCChHHHHHHhcccCChhHHHHHHHHH
Q 037562 327 PIFVKLLA--SPSVDVRKQTVWALGNVA------GDSP-----RCRDLV--LSQGALIPLLAELNENANLSMLRTATWTL 391 (670)
Q Consensus 327 ~~L~~lL~--~~~~~v~~~a~~~L~~l~------~~~~-----~~~~~i--~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L 391 (670)
...+..+. ..+.++.+..+..+..++ ...+ +.+... .-.+.++.++..+ .+.+.++...+...+
T Consensus 278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~Fw 356 (980)
T 3ibv_A 278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPFL 356 (980)
T ss_dssp HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence 22222222 366666654444443332 1111 111000 0113677777887 555667766666555
Q ss_pred HhhhcCC---CC--CChhh----hhhhHHHHHHhhccC-----------C-----hhHHHHHHHHHHHhccCChHHHHH-
Q 037562 392 FNFCRGK---PQ--PPFNQ----VRPALPVLAQLIRSN-----------D-----EEVLTDACWALSYLSDGTNDKVQA- 445 (670)
Q Consensus 392 ~~l~~~~---~~--~~~~~----~~~~i~~L~~lL~~~-----------~-----~~v~~~al~~L~~l~~~~~~~~~~- 445 (670)
..+.... +. ..... ...+++.++.-++-+ + .+.|......+..++.-.++..-.
T Consensus 357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~ 436 (980)
T 3ibv_A 357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSY 436 (980)
T ss_dssp HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 5544221 11 11122 233444444444311 1 124444442222232222222211
Q ss_pred HHHcCCHHHHHHhcC---CCCccchhHHHHHHHHhhcCCchhhHHHH-hC----CChHHHHHhhc-----cCCchhHHHH
Q 037562 446 VIEAGVYPRLVELLG---HSSSSVLTPALRTIRNIVKGDDFQTQCII-NC----GALPYFLDMLV-----HNHEESIKKE 512 (670)
Q Consensus 446 ~~~~~~i~~L~~lL~---~~~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~----~~~~~L~~~l~-----~~~~~~v~~~ 512 (670)
+.+ -+.+.+...+. +.++..++.|+.+++.++.+-........ .. .+++.+..+++ .. .+.|+..
T Consensus 437 ~~~-~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~~ 514 (980)
T 3ibv_A 437 MYS-AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQLL 514 (980)
T ss_dssp HHH-HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHHH
T ss_pred HHH-HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHHH
Confidence 111 11122333342 24678899999999999876543222110 11 23445555544 44 7899999
Q ss_pred HHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh------cCChhHHHHHHHHHHHhcCCC
Q 037562 513 VSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ------NTEFDTKKEAAWAISNATKFG 566 (670)
Q Consensus 513 a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~------~~~~~v~~~a~~aL~~l~~~~ 566 (670)
++++++..+.--.. ....++.++..+- +++..|+..|+.++.+++..+
T Consensus 515 ~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~ 568 (980)
T 3ibv_A 515 YMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSI 568 (980)
T ss_dssp HHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHh
Confidence 99999998762111 1234555555443 456789999999999998754
No 241
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.08 E-value=0.00021 Score=71.28 Aligned_cols=154 Identities=18% Similarity=0.110 Sum_probs=86.9
Q ss_pred cccEEEeccCcCcc--cc---c---ccccccCCCCcEEEEecCCC----Cc-----cccCCCccccccceeeeccccccc
Q 037562 23 EVKISEAYNCYRLE--NI---L---IEESSVMNNLVILCVHCCDH----LI-----NLVPSSTSFQNLTNLVVSHCKRLK 85 (670)
Q Consensus 23 ~L~~L~i~~c~~l~--~~---~---~~~~~~~~~L~~L~i~~c~~----l~-----~~~~~~~~~~~L~~L~i~~c~~l~ 85 (670)
.++.|.+..+. .. .. . ......+++|+.|.|.+... +. .+......+|+|++|.|.+|..++
T Consensus 108 ~v~~L~lg~~~-~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~ 186 (362)
T 2ra8_A 108 SLKQITIGXWG-YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS 186 (362)
T ss_dssp GCSEEEECCCC-SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred hcceEEEcccc-cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence 56777777553 22 11 0 11124678999999965321 10 111222457999999999985543
Q ss_pred ccccchhhhcccccceeccccccccceecccccccccccccccccccccccccccc-------ccccccCCcccCCCCcc
Q 037562 86 IVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQN-------LISFCSGNCAFTFPSLE 158 (670)
Q Consensus 86 ~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------l~~~~~~~~~~~~~~L~ 158 (670)
+ +.. .+++|++|++..|.--.+.+. ......+|+|+.|.|+...+ ++.+........||+|+
T Consensus 187 -l---~~~-~~~~L~~L~L~~~~l~~~~l~------~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr 255 (362)
T 2ra8_A 187 -I---GKK-PRPNLKSLEIISGGLPDSVVE------DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLK 255 (362)
T ss_dssp -C---CSC-BCTTCSEEEEECSBCCHHHHH------HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCC
T ss_pred -e---ccc-cCCCCcEEEEecCCCChHHHH------HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcC
Confidence 2 112 489999999987751111000 00112589999998863221 22222111123589999
Q ss_pred EEeEecCCCccccccCC---cCCCCccceeeee
Q 037562 159 ILVVNYCPNMKIFSGGE---LSTPNLHKVQLSR 188 (670)
Q Consensus 159 ~L~i~~C~~l~~~p~~~---~~~~~L~~l~i~~ 188 (670)
.|.+.+|.--...+... ...|+|+.|+++.
T Consensus 256 ~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 256 WLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp EEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred EEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence 99999987532111111 2368999998853
No 242
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.05 E-value=0.0066 Score=61.35 Aligned_cols=243 Identities=12% Similarity=0.081 Sum_probs=157.8
Q ss_pred CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh--hHHHHHhCCChHHHHHhh--CC--------CCHHHHHHHHHHHH
Q 037562 282 VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSE--NTKVVIDHGAVPIFVKLL--AS--------PSVDVRKQTVWALG 349 (670)
Q Consensus 282 ~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~--~~~~i~~~~~i~~L~~lL--~~--------~~~~v~~~a~~~L~ 349 (670)
+...|+.-|-++. .++|.-|+.+|..+...... .+....+..+.-.++.++ .. .-..||+.|+.+|+
T Consensus 175 fcE~L~~DLFdp~-WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNLLSYE-WYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHTTCSS-HHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 4566777778889 59999999999998752211 010001112233333332 11 22589999999999
Q ss_pred HhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHH
Q 037562 350 NVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDAC 429 (670)
Q Consensus 350 ~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al 429 (670)
.+ ..-+.. ..++..++..+ .....+++..++-.|.++..--. . ..++++.++..|++.|++|+..|+
T Consensus 254 aL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL~DLL~--~---Ld~Vv~aVL~GL~D~DDDVRAVAA 320 (800)
T 3oc3_A 254 RI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYLKEFVE--D---KDGLCRKLVSLLSSPDEDIKLLSA 320 (800)
T ss_dssp HH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHTGGGCC--C---HHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHHHHHHH--H---HHHHHHHHHhhcCCcccHHHHHHH
Confidence 99 655442 23444455433 55667888888888998821111 1 578899999999999999999999
Q ss_pred HHHHHhccCChHHHHHHHHcCCHHHHHHhcCCC-Ccc-chhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCch
Q 037562 430 WALSYLSDGTNDKVQAVIEAGVYPRLVELLGHS-SSS-VLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEE 507 (670)
Q Consensus 430 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~-v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~ 507 (670)
.+|..++ .++... .++..+...|.+- +-. -.......|+.++...... ......+|.|..++.+. -+
T Consensus 321 etLiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHt-IT 389 (800)
T 3oc3_A 321 ELLCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSP-VP 389 (800)
T ss_dssp HHHTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCS-SH
T ss_pred HHhhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCC-cH
Confidence 9999998 222333 3445566666553 222 2334556677776654321 12347899999999999 99
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHH-HHhhcCChhHHHHHHHHHH
Q 037562 508 SIKKEVSWIISNITCGNREQIQAVIDSGLIGPIV-NLLQNTEFDTKKEAAWAIS 560 (670)
Q Consensus 508 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~-~ll~~~~~~v~~~a~~aL~ 560 (670)
.||..+..++..+. ... ++..+. .++-.++.+++..+..+..
T Consensus 390 SVR~AVL~TL~tfL--~~~---------~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 390 EVRTSILNMVKNLS--EES---------IDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp HHHHHHHHHTTTCC--CHH---------HHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hhh---------HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999998886 222 222222 3455778888888887775
No 243
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.85 E-value=0.025 Score=51.34 Aligned_cols=186 Identities=10% Similarity=0.105 Sum_probs=127.1
Q ss_pred ChhHHHHHHHHHHHhccCChHHHHHHHHc-CCHHHHHH-------hcCCCCcc----ch-hHHHHHHHHhhcCCchhhHH
Q 037562 421 DEEVLTDACWALSYLSDGTNDKVQAVIEA-GVYPRLVE-------LLGHSSSS----VL-TPALRTIRNIVKGDDFQTQC 487 (670)
Q Consensus 421 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~-~~i~~L~~-------lL~~~~~~----v~-~~a~~~L~~l~~~~~~~~~~ 487 (670)
+++.|+.|+.-|+.--+..++....+..+ |.+..+++ .+..+.-. -| .+|+..+-.+|. +++....
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhH
Confidence 45568778777776555555555555554 55554432 23322211 12 334555555665 5566677
Q ss_pred HHhCCChHHHHHhhccCC----chhHHHHHHHHHHHhhc-CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHh
Q 037562 488 IINCGALPYFLDMLVHNH----EESIKKEVSWIISNITC-GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNA 562 (670)
Q Consensus 488 l~~~~~~~~L~~~l~~~~----~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l 562 (670)
++++.+.-.|..+|+... -+.+|-.+.++++.+.. .+++.+..+++.+++|..++.++.++.-.|..|...+..+
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 889988888888886542 24578889999999886 6788899999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHH--------cCCcHHHH-hhccCCChHHHHHHHHHHHHHHHhh
Q 037562 563 TKFGTHEQIKHLVR--------EGCVKPLC-DLLLCADPKIVTVCLEGLENILKVG 609 (670)
Q Consensus 563 ~~~~~~~~~~~l~~--------~~~i~~L~-~ll~~~~~~v~~~a~~~l~~l~~~~ 609 (670)
.. ++....++.+ ..++..++ .+.+.+++.+.+.++++..++.++.
T Consensus 173 L~--dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ 226 (268)
T 2fv2_A 173 LL--DDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP 226 (268)
T ss_dssp HH--SHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred hc--cchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence 87 3444444332 11232233 3447788899999999988877543
No 244
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.83 E-value=0.13 Score=58.48 Aligned_cols=356 Identities=11% Similarity=0.113 Sum_probs=185.9
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCC-------c-----HHHHHHc--CCHHHHHHhhcCCCCHHHHHHHH
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSP-------P-----IDEVIQS--GVVPRFVEFLMRQDYPQLQFKAA 303 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~-------~-----~~~~~~~--g~l~~L~~ll~~~~~~~v~~~a~ 303 (670)
+.++.+++.+++ ++......+..|..+...-... . .+.+.+. .+++.+...+....++++...+.
T Consensus 150 ~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L 228 (1073)
T 3gjx_A 150 TFISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATL 228 (1073)
T ss_dssp THHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Confidence 446666666543 2344455666666654431000 0 1112221 12333334454444478888899
Q ss_pred HHHHHHcCCChhhHHHHHhCCChHHH-HHhhCCCCHHHHHHHHHHHHHhhCCC-chhHHHHHhcCChHHHH----HHh--
Q 037562 304 WALTNIASGTSENTKVVIDHGAVPIF-VKLLASPSVDVRKQTVWALGNVAGDS-PRCRDLVLSQGALIPLL----AEL-- 375 (670)
Q Consensus 304 ~~L~~l~~~~~~~~~~i~~~~~i~~L-~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~~~i~~Ll----~~l-- 375 (670)
.+++.+.. - -....+++.+.++.+ ..++ +++.++..|+.+|..+.... ++..+.+.. .+..++ ..+
T Consensus 229 ~~L~~~~s-W-I~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~--lf~~~~~~i~~ilp~ 302 (1073)
T 3gjx_A 229 ETLLRFLN-W-IPLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFET--LFTLTMMQLKQMLPL 302 (1073)
T ss_dssp HHHHHHTT-T-SCTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHHH--HHHHHHHHHHHHSCT
T ss_pred HHHHHHHH-h-cCHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHHH--HHHHHHHHHHHhcCC
Confidence 99999886 2 234567788888888 4666 46789999999999987532 222222211 111111 111
Q ss_pred ----------cccCChhHHHHHHHHHHhhhcCCC-----C-CChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccC-
Q 037562 376 ----------NENANLSMLRTATWTLFNFCRGKP-----Q-PPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDG- 438 (670)
Q Consensus 376 ----------~~~~~~~~~~~a~~~L~~l~~~~~-----~-~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~- 438 (670)
....|++.....+.++..+..... . ........++..++.+-..+|.++...++..-..++..
T Consensus 303 ~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L 382 (1073)
T 3gjx_A 303 NTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAEL 382 (1073)
T ss_dssp TSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 122234555566666665544320 0 01112233445556666677888877766554443311
Q ss_pred ---C------------------hHHH---HHHHHcCCHHHHHHhcCCCCc---------c-chh------------HHHH
Q 037562 439 ---T------------------NDKV---QAVIEAGVYPRLVELLGHSSS---------S-VLT------------PALR 472 (670)
Q Consensus 439 ---~------------------~~~~---~~~~~~~~i~~L~~lL~~~~~---------~-v~~------------~a~~ 472 (670)
. .... ..++. .+...++..+..+++ + +|. ..-.
T Consensus 383 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~-~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd 461 (1073)
T 3gjx_A 383 YRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLS-KVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRE 461 (1073)
T ss_dssp HHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHH-HHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHH
T ss_pred HhhccccccccccccccccccchhHHHHHHHHHH-HHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHH
Confidence 0 0111 11111 334445555554321 1 111 0111
Q ss_pred HHHHhhcCCchhhHHHHhCCChHHHHHhhccC-CchhHHHHHHHHHHHhhcC-CHH-HHHHHHhcCChHHHHHHhhcCC-
Q 037562 473 TIRNIVKGDDFQTQCIINCGALPYFLDMLVHN-HEESIKKEVSWIISNITCG-NRE-QIQAVIDSGLIGPIVNLLQNTE- 548 (670)
Q Consensus 473 ~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~-~~~~v~~~a~~~L~~l~~~-~~~-~~~~l~~~~~i~~L~~ll~~~~- 548 (670)
++..++.-.......+ ..+.+.+.+... .+....+.++|+++.++.. .++ ....+.+ +++.|+.+.+...
T Consensus 462 ~L~~lt~l~~~~~~~i----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~--vi~~Ll~L~e~~~~ 535 (1073)
T 3gjx_A 462 TLVYLTHLDYVDTEII----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVT--VIKDLLGLCEQKRG 535 (1073)
T ss_dssp HHHHHHHHCHHHHHHH----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH--HHHHHHHHHHHSCS
T ss_pred HHHHHhcCCHHHHHHH----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHH--HHHHHhcccccccc
Confidence 2222221111111111 233344444432 2678899999999999764 222 2233333 6777777776441
Q ss_pred ----hhHHHHHHHHHHHhcCC--CCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhh
Q 037562 549 ----FDTKKEAAWAISNATKF--GTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAE 612 (670)
Q Consensus 549 ----~~v~~~a~~aL~~l~~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~ 612 (670)
..++...+++++..... ..++..+. ++..|++.+.+.++.|+..|+.++..+...+...
T Consensus 536 kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~ 600 (1073)
T 3gjx_A 536 KDNKAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRH 600 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGG
T ss_pred cchhHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 23455556777775443 13333333 5777888888899999999999999998877653
No 245
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.80 E-value=0.056 Score=51.42 Aligned_cols=201 Identities=11% Similarity=0.102 Sum_probs=145.0
Q ss_pred HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCch----hHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhh
Q 037562 319 VVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPR----CRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNF 394 (670)
Q Consensus 319 ~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~----~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l 394 (670)
.+...+.+..|+..|..-+-+.|..+..++.++...... ..+.+.. --..+..++..-.++++.-.+...|...
T Consensus 73 ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRec 150 (341)
T 1upk_A 73 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLREC 150 (341)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHHH
Confidence 344567888999999988899999999999998865432 2233332 2333334443344556666666667777
Q ss_pred hcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHc---CCHHHHHHhcCCCCccchhHHH
Q 037562 395 CRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEA---GVYPRLVELLGHSSSSVLTPAL 471 (670)
Q Consensus 395 ~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~---~~i~~L~~lL~~~~~~v~~~a~ 471 (670)
.++..........+.+-.+....+.++-++...|..++..+..........++.. .++...-.+|.+++--++.+++
T Consensus 151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl 230 (341)
T 1upk_A 151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL 230 (341)
T ss_dssp HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence 7665444444445666677788888999999999999998876666555555554 4677888899999999999999
Q ss_pred HHHHHhhcCCch---hhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc
Q 037562 472 RTIRNIVKGDDF---QTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC 522 (670)
Q Consensus 472 ~~L~~l~~~~~~---~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 522 (670)
..|+.+...... ..+.+-+..-+..++.+|.+. +..++.+|..++.-+.+
T Consensus 231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeee
Confidence 999999874322 233333556688899999999 99999999999988877
No 246
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.76 E-value=0.0013 Score=66.41 Aligned_cols=244 Identities=15% Similarity=0.125 Sum_probs=150.7
Q ss_pred cHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHH-HHHcCCHHHHHHhhc---------CCCCHHHHHHHHHHHHH
Q 037562 239 ILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDE-VIQSGVVPRFVEFLM---------RQDYPQLQFKAAWALTN 308 (670)
Q Consensus 239 ~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~g~l~~L~~ll~---------~~~~~~v~~~a~~~L~~ 308 (670)
....|+..|-++..++|--|+-+|+.+........... ....+..-.++..+. +.-...||+.|+.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 45678888889999999999999998865421100000 000022333333221 22226899999999999
Q ss_pred HcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHH
Q 037562 309 IASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTAT 388 (670)
Q Consensus 309 l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~ 388 (670)
+ .+-+.. ..++..++..+..+..+++..++-.|..+. +-... + .++++.++..| .+.|.+|+..|+
T Consensus 255 L-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~-L--d~Vv~aVL~GL-~D~DDDVRAVAA 320 (800)
T 3oc3_A 255 I-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED-K--DGLCRKLVSLL-SSPDEDIKLLSA 320 (800)
T ss_dssp H-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC-H--HHHHHHHHHHT-TCSSHHHHHHHH
T ss_pred H-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH-H--HHHHHHHHhhc-CCcccHHHHHHH
Confidence 9 644433 345566666667889999999999999882 11111 1 23467777777 677889999999
Q ss_pred HHHHhhhcCCCCCChhhhhhhHHHHHHhhccCC--hhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccc
Q 037562 389 WTLFNFCRGKPQPPFNQVRPALPVLAQLIRSND--EEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSV 466 (670)
Q Consensus 389 ~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~--~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v 466 (670)
.+|.-++ .+ .....++..+-..|.+.| ......++..|+.+...+... ..+...++.+.+++.+.-.+|
T Consensus 321 etLiPIA--~p----~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHtITSV 391 (800)
T 3oc3_A 321 ELLCHFP--IT----DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSPVPEV 391 (800)
T ss_dssp HHHTTSC--CS----STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCSSHHH
T ss_pred HHhhhhc--ch----hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCCcHHH
Confidence 9999988 11 223455555555555432 222333444555554332210 112378899999999999999
Q ss_pred hhHHHHHHHHhhcCCchhhHHHHhCCChHHHH-HhhccCCchhHHHHHHHHH
Q 037562 467 LTPALRTIRNIVKGDDFQTQCIINCGALPYFL-DMLVHNHEESIKKEVSWII 517 (670)
Q Consensus 467 ~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~-~~l~~~~~~~v~~~a~~~L 517 (670)
|..++.++..+. ... ++..+. .+|-.. +++++..+..+-
T Consensus 392 R~AVL~TL~tfL--~~~---------~LRLIFQNILLE~-neeIl~lS~~VW 431 (800)
T 3oc3_A 392 RTSILNMVKNLS--EES---------IDFLVAEVVLIEE-KDEIREMAIKLL 431 (800)
T ss_dssp HHHHHHHTTTCC--CHH---------HHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hhh---------HHHHHHHHHHhCC-cHHHHHHHHHHH
Confidence 999999997776 111 222222 334444 677777666555
No 247
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.76 E-value=0.024 Score=52.83 Aligned_cols=178 Identities=14% Similarity=0.066 Sum_probs=115.8
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHh---cccCChhHHHHHHHHHHhhh----cCCC
Q 037562 327 PIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAEL---NENANLSMLRTATWTLFNFC----RGKP 399 (670)
Q Consensus 327 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l---~~~~~~~~~~~a~~~L~~l~----~~~~ 399 (670)
+.+...+-+.+..-+..++..|.......+. .+.. .+..++..+ ..+.+..+...++.+|..+. ....
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPR---SLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 3445555556666666666666665433221 1111 222333322 13556777776666666543 3222
Q ss_pred CCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 037562 400 QPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVK 479 (670)
Q Consensus 400 ~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 479 (670)
.-.......++|.|+.-+.++.+.+|..+-.++..+....+ ...+++.+...+.+.++.+|..++..++.+..
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~ 196 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYIT 196 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 22333346788999999988889999988888876653111 12356778888999999999999999999975
Q ss_pred CCchhhHHHHhCCCh---HHHHHhhccCCchhHHHHHHHHHHHhhc
Q 037562 480 GDDFQTQCIINCGAL---PYFLDMLVHNHEESIKKEVSWIISNITC 522 (670)
Q Consensus 480 ~~~~~~~~l~~~~~~---~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 522 (670)
..... ...++ +.+..++.+. |..||..|..++..+-.
T Consensus 197 ~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 197 NAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred hcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence 33221 13467 9999999998 99999999999987754
No 248
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.76 E-value=0.0024 Score=56.27 Aligned_cols=101 Identities=15% Similarity=0.249 Sum_probs=65.1
Q ss_pred cEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccC-CCccccccceeeecccccccccccchhhhcccccceec
Q 037562 25 KISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVP-SSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYME 103 (670)
Q Consensus 25 ~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~-~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~ 103 (670)
+.+.+++. +++.+|.. ..++|+.|+++++. +..+++ .+..+++|+.|++++. +++.+ ++..+..+++|++|+
T Consensus 15 ~~l~~~~n-~l~~iP~~---~~~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i-~~~~~~~l~~L~~L~ 87 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAG---IPTDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSN-KLTAI-PTGVFDKLTQLTQLD 87 (174)
T ss_dssp SEEECCSS-CCSSCCSC---CCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEE
T ss_pred cEEEeCCC-CCCccCCC---cCCCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCC-CCCcc-ChhHhCCcchhhEEE
Confidence 44554443 46666643 24788888888774 556543 4567888899988887 56665 223356788899988
Q ss_pred cccccccceeccccccccccccccccccccccccccc
Q 037562 104 IESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQ 140 (670)
Q Consensus 104 i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 140 (670)
+++.. ++.++. .....+++|+.|.+.+.+
T Consensus 88 L~~N~-l~~l~~-------~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 88 LNDNH-LKSIPR-------GAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCSSC-CCCCCT-------TTTTTCTTCSEEECCSSC
T ss_pred CCCCc-cceeCH-------HHhccccCCCEEEeCCCC
Confidence 88763 444431 123457888888887653
No 249
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.73 E-value=0.0044 Score=61.19 Aligned_cols=32 Identities=13% Similarity=0.089 Sum_probs=15.3
Q ss_pred CCCCcEEEEecCCCCccccCC-Cccccccceeeec
Q 037562 46 MNNLVILCVHCCDHLINLVPS-STSFQNLTNLVVS 79 (670)
Q Consensus 46 ~~~L~~L~i~~c~~l~~~~~~-~~~~~~L~~L~i~ 79 (670)
+++|++|.+.+ +++.++.. +..+++|+.|.+.
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~ 132 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIR 132 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBC
T ss_pred cCCCcEEECCc--cccchhHHHhhcCcccceEEcC
Confidence 55555555554 44444432 2334555555553
No 250
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=96.73 E-value=0.12 Score=49.28 Aligned_cols=203 Identities=12% Similarity=0.100 Sum_probs=146.4
Q ss_pred HHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCch----hhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHH
Q 037562 444 QAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDF----QTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISN 519 (670)
Q Consensus 444 ~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~----~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~ 519 (670)
+.++..+.+..++..|..=+.+.|..+..+..++...... ....+.. -.+.+..++..-.++++.-.+...|..
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~diAl~~G~mLRe 149 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESPEIALNCGIMLRE 149 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGSTTTHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccchhHhHHHHHHHH
Confidence 4466779999999999998999999999999999875542 2333332 233333333332245666666666666
Q ss_pred hhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcC---CcHHHHhhccCCChHHHH
Q 037562 520 ITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREG---CVKPLCDLLLCADPKIVT 596 (670)
Q Consensus 520 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~---~i~~L~~ll~~~~~~v~~ 596 (670)
++. .+.....++..+.+..+.+..+.++.++...|..++..+... .+.....++..+ .+.....++.+++.-++.
T Consensus 150 cir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~-Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkR 227 (341)
T 1upk_A 150 CIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTR-HKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR 227 (341)
T ss_dssp HHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhc-cHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHH
Confidence 655 466777788888888999999999999999999999998776 344444444433 466777899999999999
Q ss_pred HHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 037562 597 VCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETY 660 (670)
Q Consensus 597 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~ 660 (670)
.+++.|+.++-+-.+.. .....+....-+..+-.|+.+++..++..|-.+..-+
T Consensus 228 QSlKLLgelLldr~N~~----------vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvF 281 (341)
T 1upk_A 228 QSLKLLGELLLDRHNFT----------IMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVF 281 (341)
T ss_dssp HHHHHHHHHHHSGGGHH----------HHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchHHH----------HHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeee
Confidence 99999999997654432 2344455555566777888999999998887776544
No 251
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.71 E-value=0.061 Score=48.80 Aligned_cols=191 Identities=13% Similarity=0.082 Sum_probs=125.9
Q ss_pred CccchhHHHHHHHHhhcCCchhhHHHHhC-CChHHHHHhhcc-------CC-chhHH---HHHHHHHHHhhcCCHHHHHH
Q 037562 463 SSSVLTPALRTIRNIVKGDDFQTQCIINC-GALPYFLDMLVH-------NH-EESIK---KEVSWIISNITCGNREQIQA 530 (670)
Q Consensus 463 ~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-~~~~~L~~~l~~-------~~-~~~v~---~~a~~~L~~l~~~~~~~~~~ 530 (670)
+++.|+.|+.-|+.=-...++....+..+ |.+..|++=+-+ +. ....- ..|...+..++ ..++.+..
T Consensus 14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvA-shpetr~~ 92 (268)
T 2fv2_A 14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVA-SHPETRSA 92 (268)
T ss_dssp STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHH-HCTTTHHH
T ss_pred CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHH-cCcchhhH
Confidence 44468888777766544444444444433 555554433211 10 11122 23333444454 45788889
Q ss_pred HHhcCChHHHHHHhhcCC-----hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHH
Q 037562 531 VIDSGLIGPIVNLLQNTE-----FDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENI 605 (670)
Q Consensus 531 l~~~~~i~~L~~ll~~~~-----~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l 605 (670)
++++++.-.|..++...+ +.+|..+.++++.+...++++...++.+.++++...+.++.++.-.+..|..++.++
T Consensus 93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI 172 (268)
T 2fv2_A 93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI 172 (268)
T ss_dssp HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 999999888888888443 578999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhccCCCCCCccHHHHHHHHhchHHH-HHHhhcCCCHHHHHHHHHHHHHh
Q 037562 606 LKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEK-IENLQSHDDNGISEKAVEILETY 660 (670)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-l~~L~~~~~~~v~~~a~~~l~~~ 660 (670)
+.++.-....+.. ..+|... ...+.. +.++...+++.+-+.......++
T Consensus 173 L~dd~GL~YiC~t---~eRF~av---~~vL~~mV~~l~~~ps~RLLKhiircYlRL 222 (268)
T 2fv2_A 173 LLDDTGLAYICQT---YERFSHV---AMILGKMVLQLSKEPSARLLKHVVRCYLRL 222 (268)
T ss_dssp HHSHHHHHHHTSS---HHHHHHH---HHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred hccchhHHHHHcc---HHHHHHH---HHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 9887766655442 2222211 112222 34566677777665544444333
No 252
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.65 E-value=0.0038 Score=62.16 Aligned_cols=100 Identities=19% Similarity=0.164 Sum_probs=67.8
Q ss_pred EEeccCcCcccccccccccCCCCcEEEEecCCCCccccC-CCccccccceeeecccccccccccchhhhcccccceeccc
Q 037562 27 SEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVP-SSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIE 105 (670)
Q Consensus 27 L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~-~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~ 105 (670)
+...+..+|+.+|. ...+++|+.|+++++..+..+++ .+..+++|+.|++++. +|+.+. +..+..|++|++|+++
T Consensus 13 v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 13 LRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVA-PDAFHFTPRLSRLNLS 88 (347)
T ss_dssp EECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEEC-TTGGGSCSCCCEEECC
T ss_pred EEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeC-HHHhcCCcCCCEEeCC
Confidence 33333335777776 46778899999988778888875 4667899999999987 577653 3456789999999998
Q ss_pred cccccceecccccccccccccccccccccccccc
Q 037562 106 SCDKITEIVLVDDVVAQDEVITFRELKELNLLQM 139 (670)
Q Consensus 106 ~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 139 (670)
+. .+..++.. ....+ +|+.|.+.+.
T Consensus 89 ~N-~l~~~~~~-------~~~~~-~L~~l~l~~N 113 (347)
T 2ifg_A 89 FN-ALESLSWK-------TVQGL-SLQELVLSGN 113 (347)
T ss_dssp SS-CCSCCCST-------TTCSC-CCCEEECCSS
T ss_pred CC-ccceeCHH-------HcccC-CceEEEeeCC
Confidence 75 35544321 11112 2777877653
No 253
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.62 E-value=0.0079 Score=59.33 Aligned_cols=78 Identities=18% Similarity=0.111 Sum_probs=40.8
Q ss_pred ccccceeccccccccceeccccccccccccccccccccccccccccccccccCCcccCCCCcc-EEeEecCCCccccccC
Q 037562 96 LVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCSGNCAFTFPSLE-ILVVNYCPNMKIFSGG 174 (670)
Q Consensus 96 l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~-~L~i~~C~~l~~~p~~ 174 (670)
+++|++|++.++. ++.+.. .....+++|+.+.+.+ +++.+..+ ....+++|+ .+.+.+ +++.++.+
T Consensus 225 ~~~L~~l~L~~n~-i~~I~~-------~aF~~~~~L~~l~l~~--ni~~I~~~-aF~~~~~L~~~l~l~~--~l~~I~~~ 291 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIPD-------FTFAQKKYLLKIKLPH--NLKTIGQR-VFSNCGRLAGTLELPA--SVTAIEFG 291 (329)
T ss_dssp CTTCCEEECTTBC-CCEECT-------TTTTTCTTCCEEECCT--TCCEECTT-TTTTCTTCCEEEEECT--TCCEECTT
T ss_pred cCCCeEEECCCCC-cceecH-------hhhhCCCCCCEEECCc--ccceehHH-HhhCChhccEEEEEcc--cceEEchh
Confidence 4566666665432 333321 1122355666666654 35555443 244566676 776665 56666543
Q ss_pred -CcCCCCccceee
Q 037562 175 -ELSTPNLHKVQL 186 (670)
Q Consensus 175 -~~~~~~L~~l~i 186 (670)
...+++|+.+++
T Consensus 292 aF~~c~~L~~l~l 304 (329)
T 3sb4_A 292 AFMGCDNLRYVLA 304 (329)
T ss_dssp TTTTCTTEEEEEE
T ss_pred hhhCCccCCEEEe
Confidence 234566666665
No 254
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=96.58 E-value=0.26 Score=46.54 Aligned_cols=171 Identities=15% Similarity=0.132 Sum_probs=113.4
Q ss_pred HHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhc-cCChhHHH
Q 037562 348 LGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIR-SNDEEVLT 426 (670)
Q Consensus 348 L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~-~~~~~v~~ 426 (670)
|.++..++...-+-++..+++..+...+ +-++.++.+..+..|...+.... -...-....+|.++..+. ++++++..
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~Tvi-nYpN~~l~RaG~KLLLQVSDaks-L~~t~L~e~LPFi~~~i~~h~eDdvvY 343 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVV-QYPNNDLIRAGCKLLLQVSDAKA-LAKTPLENILPFLLRLIEIHPDDEVIY 343 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHTTCGG-GGTSCCTTHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEe-ecCCcHHHHhhhheeeeecchHH-HhhccccccchHHHHHhccCCCcceEE
Confidence 3445556666677788888899888888 77888999999999988887641 122223567788887776 67899999
Q ss_pred HHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCC-------CccchhHHHHHHHHhhc--------------------
Q 037562 427 DACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHS-------SSSVLTPALRTIRNIVK-------------------- 479 (670)
Q Consensus 427 ~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-------~~~v~~~a~~~L~~l~~-------------------- 479 (670)
.....++|...+.....+..+..|++..+-..+... +..-+..||.+++|...
T Consensus 344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~ 423 (619)
T 3c2g_A 344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA 423 (619)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence 999999999988777777777889998888776431 22234445555544321
Q ss_pred CC--chhhHHHHhCCChHHHHHhhccCC-----chhHHHHHHHHHHHh
Q 037562 480 GD--DFQTQCIINCGALPYFLDMLVHNH-----EESIKKEVSWIISNI 520 (670)
Q Consensus 480 ~~--~~~~~~l~~~~~~~~L~~~l~~~~-----~~~v~~~a~~~L~~l 520 (670)
+. ..+...+++..++..|+..|+.+. --++|........-+
T Consensus 424 G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~Lv 471 (619)
T 3c2g_A 424 GPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILL 471 (619)
T ss_dssp CHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHH
Confidence 00 112233456677888888886542 124455544444333
No 255
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.53 E-value=0.0069 Score=53.29 Aligned_cols=102 Identities=18% Similarity=0.187 Sum_probs=65.1
Q ss_pred cEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceecccccccccccccccc
Q 037562 50 VILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFR 129 (670)
Q Consensus 50 ~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~ 129 (670)
+.+++++. .+..+|... +++|+.|++++.. ++.+. +..+..+++|++|++++. .++.++. .....++
T Consensus 15 ~~l~~~~n-~l~~iP~~~--~~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~i~~-------~~~~~l~ 81 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAGI--PTDKQRLWLNNNQ-ITKLE-PGVFDHLVNLQQLYFNSN-KLTAIPT-------GVFDKLT 81 (174)
T ss_dssp SEEECCSS-CCSSCCSCC--CTTCSEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-------TTTTTCT
T ss_pred cEEEeCCC-CCCccCCCc--CCCCcEEEeCCCC-ccccC-HHHhcCCcCCCEEECCCC-CCCccCh-------hHhCCcc
Confidence 34555443 356666543 3788899888773 55442 344667888999988877 3555432 1123578
Q ss_pred ccccccccccccccccccCCcccCCCCccEEeEecCC
Q 037562 130 ELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCP 166 (670)
Q Consensus 130 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~ 166 (670)
+|+.|.+.+. +++.++.+ ....+++|+.|++.+.+
T Consensus 82 ~L~~L~L~~N-~l~~l~~~-~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 82 QLTQLDLNDN-HLKSIPRG-AFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TCCEEECCSS-CCCCCCTT-TTTTCTTCSEEECCSSC
T ss_pred hhhEEECCCC-ccceeCHH-HhccccCCCEEEeCCCC
Confidence 8888888874 56665542 24457888888888764
No 256
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.50 E-value=0.0046 Score=54.18 Aligned_cols=102 Identities=14% Similarity=0.207 Sum_probs=66.7
Q ss_pred cccEEEeccCcCcccccccccccCCCCcEEEEecCCCCccccC-CCccccccceeeecccccccccccchhhhcccccce
Q 037562 23 EVKISEAYNCYRLENILIEESSVMNNLVILCVHCCDHLINLVP-SSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRY 101 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~-~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~ 101 (670)
..+.+++++. +++.+|.. ..++|+.|++++.. +..+++ .+..+++|+.|++++. +++.+ ++..+..+++|++
T Consensus 10 ~~~~l~~s~n-~l~~ip~~---~~~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l-~~~~f~~l~~L~~ 82 (170)
T 3g39_A 10 SGTTVDCSGK-SLASVPTG---IPTTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNN-QLTVL-PAGVFDKLTQLTQ 82 (170)
T ss_dssp ETTEEECTTS-CCSSCCSC---CCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCE
T ss_pred CCCEEEeCCC-CcCccCcc---CCCCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCC-CcCcc-ChhhccCCCCCCE
Confidence 3456666653 46666643 34788888888764 556643 4567888899998877 46654 2234567888999
Q ss_pred eccccccccceecccccccccccccccccccccccccc
Q 037562 102 MEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQM 139 (670)
Q Consensus 102 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 139 (670)
|++++.. ++.++. .....+++|+.|.+.+-
T Consensus 83 L~L~~N~-l~~~~~-------~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 83 LSLNDNQ-LKSIPR-------GAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp EECCSSC-CCCCCT-------TTTTTCTTCCEEECCSS
T ss_pred EECCCCc-cCEeCH-------HHhcCCCCCCEEEeCCC
Confidence 9888763 544431 12335788888888764
No 257
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=96.48 E-value=0.25 Score=56.27 Aligned_cols=297 Identities=12% Similarity=0.135 Sum_probs=155.7
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCCC-hhhHHHHHh--CC
Q 037562 249 SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRF-VEFLMRQDYPQLQFKAAWALTNIASGT-SENTKVVID--HG 324 (670)
Q Consensus 249 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L-~~ll~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~--~~ 324 (670)
..++++...++.++....+-- ....+++.+.++.+ ..++. + ++++..|+.+|..+...+ ++..+.+.. .+
T Consensus 218 ~~~~~lv~~~L~~L~~~~sWI---~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~~~~~lf~~ 291 (1073)
T 3gjx_A 218 SQNAPLVHATLETLLRFLNWI---PLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEEQFETLFTL 291 (1073)
T ss_dssp CCCHHHHHHHHHHHHHHTTTS---CTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhc---CHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 567788888899999887763 35678888888887 46664 4 789999999999987632 222222211 01
Q ss_pred ChHHHHHhh-------------CCCCHHHHHHHHHHHHHhhCC-------CchhHHHHHhcCChHHHHHHhcccCChhHH
Q 037562 325 AVPIFVKLL-------------ASPSVDVRKQTVWALGNVAGD-------SPRCRDLVLSQGALIPLLAELNENANLSML 384 (670)
Q Consensus 325 ~i~~L~~lL-------------~~~~~~v~~~a~~~L~~l~~~-------~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~ 384 (670)
++..+..++ ...+.+....-+..+..+... .|..+..+.. ++..++.+- ..++.++.
T Consensus 292 ~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~--~l~~ll~~s-~~~d~ei~ 368 (1073)
T 3gjx_A 292 TMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALME--ALHYMLLVS-EVEETEIF 368 (1073)
T ss_dssp HHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHH--HHHHHHHHT-TCSCHHHH
T ss_pred HHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHH--HHHHHHHHh-CCCcHHHH
Confidence 111121222 112334444455555544311 1111111111 122233333 45677777
Q ss_pred HHHHHHHHhhhcC----CC-----C------------CChhhhhhhHHHHHHhh----ccCC------------------
Q 037562 385 RTATWTLFNFCRG----KP-----Q------------PPFNQVRPALPVLAQLI----RSND------------------ 421 (670)
Q Consensus 385 ~~a~~~L~~l~~~----~~-----~------------~~~~~~~~~i~~L~~lL----~~~~------------------ 421 (670)
+.+......+... .+ . .+.....+++..+...+ ..++
T Consensus 369 kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~ 448 (1073)
T 3gjx_A 369 KICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMK 448 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECS
T ss_pred HHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHh
Confidence 7665554433321 11 0 01111234444443332 2111
Q ss_pred --h-----hHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC--CCccchhHHHHHHHHhhcCCchhhHHHHhCC
Q 037562 422 --E-----EVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH--SSSSVLTPALRTIRNIVKGDDFQTQCIINCG 492 (670)
Q Consensus 422 --~-----~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~ 492 (670)
. .+...++..+.++.. ++... + .++.+...+.. .++.....++++++.++..-......-+-..
T Consensus 449 d~~~~~ly~~mrd~L~~lt~l~~--~~~~~-i----~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~ 521 (1073)
T 3gjx_A 449 DTDSINLYKNMRETLVYLTHLDY--VDTEI-I----MTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVT 521 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCH--HHHHH-H----HHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHhcCCH--HHHHH-H----HHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHH
Confidence 0 122233333333321 11111 1 22344444443 3577899999999999854332222111124
Q ss_pred ChHHHHHhhccCC----chhHHHHHHHHHHHhhc---CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCC
Q 037562 493 ALPYFLDMLVHNH----EESIKKEVSWIISNITC---GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKF 565 (670)
Q Consensus 493 ~~~~L~~~l~~~~----~~~v~~~a~~~L~~l~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 565 (670)
+++.|+.+..... ...++...+|+++..+. ..++... .++..+++.+.+.++.|+..|+.|+..++..
T Consensus 522 vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~-----~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~ 596 (1073)
T 3gjx_A 522 VIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK-----TVVNKLFEFMHETHDGVQDMACDTFIKIAQK 596 (1073)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-----HHHHHHHHHTTCCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 5667776665431 22355556688888755 2333222 2556777778888899999999999999875
Q ss_pred C
Q 037562 566 G 566 (670)
Q Consensus 566 ~ 566 (670)
+
T Consensus 597 C 597 (1073)
T 3gjx_A 597 C 597 (1073)
T ss_dssp T
T ss_pred H
Confidence 4
No 258
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.40 E-value=0.0095 Score=52.15 Aligned_cols=101 Identities=13% Similarity=0.095 Sum_probs=61.9
Q ss_pred cEEEEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceecccccccccccccccc
Q 037562 50 VILCVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFR 129 (670)
Q Consensus 50 ~~L~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~ 129 (670)
+.+++++. .+..+|... +++|+.|++++. +++.+. +..+..+++|++|++++.. ++.++. .....++
T Consensus 12 ~~l~~s~n-~l~~ip~~~--~~~l~~L~L~~N-~i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~l~~-------~~f~~l~ 78 (170)
T 3g39_A 12 TTVDCSGK-SLASVPTGI--PTTTQVLYLYDN-QITKLE-PGVFDRLTQLTRLDLDNNQ-LTVLPA-------GVFDKLT 78 (170)
T ss_dssp TEEECTTS-CCSSCCSCC--CTTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSSC-CCCCCT-------TTTTTCT
T ss_pred CEEEeCCC-CcCccCccC--CCCCcEEEcCCC-cCCccC-hhhhcCcccCCEEECCCCC-cCccCh-------hhccCCC
Confidence 45555553 356666543 477888888876 444442 2345678888888887763 444431 1123577
Q ss_pred ccccccccccccccccccCCcccCCCCccEEeEecC
Q 037562 130 ELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYC 165 (670)
Q Consensus 130 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C 165 (670)
+|+.|.+.+. +++.++.+ ....+++|+.|++.+-
T Consensus 79 ~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 79 QLTQLSLNDN-QLKSIPRG-AFDNLKSLTHIWLLNN 112 (170)
T ss_dssp TCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSS
T ss_pred CCCEEECCCC-ccCEeCHH-HhcCCCCCCEEEeCCC
Confidence 8888888765 46665542 2445778888888763
No 259
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=96.37 E-value=0.12 Score=51.74 Aligned_cols=255 Identities=14% Similarity=0.075 Sum_probs=146.6
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhh
Q 037562 328 IFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVR 407 (670)
Q Consensus 328 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 407 (670)
.++...+ +++..+.-|+..+.....+-|+.++. ++..++.++ .+.|..+|..|...|..+|.+ ....
T Consensus 33 ~Il~~~k-g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~ 99 (507)
T 3u0r_A 33 VILDGVK-GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLP 99 (507)
T ss_dssp HHHHGGG-SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHH
T ss_pred HHHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhh
Confidence 3444333 56899999999999999888887666 578899999 888999999999999999987 2367
Q ss_pred hhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcC-CchhhH
Q 037562 408 PALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKG-DDFQTQ 486 (670)
Q Consensus 408 ~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~-~~~~~~ 486 (670)
.+...|+++|+.+++.-...+-.+|..+...++. +.+..+...+..+++.+|+.++..|..=... ..+...
T Consensus 100 kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~ 171 (507)
T 3u0r_A 100 RVADILTQLLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLT 171 (507)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSC
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhcc
Confidence 8889999999998877776666777666544332 2334444444446778898888887544332 111111
Q ss_pred HHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc-CCHHHHHHHHhcCChHHHHHHhh------cCChhHHHHHHH--
Q 037562 487 CIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC-GNREQIQAVIDSGLIGPIVNLLQ------NTEFDTKKEAAW-- 557 (670)
Q Consensus 487 ~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~------~~~~~v~~~a~~-- 557 (670)
.-++.-++..+.+.|++- ..+-=.-....|..+-. ......+.++ +.+.+... ..|.+.....+.
T Consensus 172 ~E~E~~i~~~ikK~L~DV-T~~EF~L~m~lL~~lkl~~t~~g~qeLv-----~ii~eQa~L~~~f~~sD~e~vdRlI~C~ 245 (507)
T 3u0r_A 172 KEVEELILTESKKVLEDV-TGEEFVLFMKILSGLKSLQTVSGRQQLV-----ELVAEQADLEQTFNPSDPDCVDRLLQCT 245 (507)
T ss_dssp HHHHHHHHHHHHHHTTSC-CHHHHHHHHHHHHTSGGGSSHHHHHHHH-----HHHHHHHTTTSCCCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHhcccccCchHHHHHH-----HHHHHHHhccCCCCCcCHHHHHHHHHHH
Confidence 122223445566666554 22222222233333322 2333333332 22222211 134443333333
Q ss_pred --HHHHhcCC-CCHHHHHHHHHcCCcHHHHhhccCC-ChHHHHHHHHHHHHHHHhhh
Q 037562 558 --AISNATKF-GTHEQIKHLVREGCVKPLCDLLLCA-DPKIVTVCLEGLENILKVGV 610 (670)
Q Consensus 558 --aL~~l~~~-~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~l~~l~~~~~ 610 (670)
|+--++.. .+.....++.+. ++|.+-.+-... .++.+...++++..+..+..
T Consensus 246 ~~ALP~FS~~v~StkFv~y~~~k-IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~ 301 (507)
T 3u0r_A 246 RQAVPLFSKNVHSTRFVTYFCEQ-VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCG 301 (507)
T ss_dssp HHHGGGCBTTBCCHHHHHHHHHH-TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhccCCChHHHHHHHHHh-hccchhhccccccchHHHHHHHHHHHHHccCCC
Confidence 33333332 245566666654 777665554432 22355555666655554433
No 260
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.36 E-value=0.006 Score=60.71 Aligned_cols=83 Identities=22% Similarity=0.136 Sum_probs=48.7
Q ss_pred EEecCCCCccccCCCccccccceeeecccccccccccchhhhcccccceeccccccccceeccccccccccccccccccc
Q 037562 53 CVHCCDHLINLVPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELK 132 (670)
Q Consensus 53 ~i~~c~~l~~~~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~ 132 (670)
+.++..+|..+|. +..+++|+.|+++++.+++.+. +..+..|++|+.|++++. .++.++. .....+++|+
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~~-------~~~~~l~~L~ 83 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKS-GLRFVAP-------DAFHFTPRLS 83 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSS-CCCEECT-------TGGGSCSCCC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcC-hhHhccccCCCEEECCCC-ccceeCH-------HHhcCCcCCC
Confidence 3333335666776 6777778888888777777652 234567778888877776 3554431 1122355666
Q ss_pred cccccccccccccc
Q 037562 133 ELNLLQMQNLISFC 146 (670)
Q Consensus 133 ~L~l~~~~~l~~~~ 146 (670)
.|.|++ .+|+.++
T Consensus 84 ~L~l~~-N~l~~~~ 96 (347)
T 2ifg_A 84 RLNLSF-NALESLS 96 (347)
T ss_dssp EEECCS-SCCSCCC
T ss_pred EEeCCC-CccceeC
Confidence 666655 2344443
No 261
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.18 E-value=0.047 Score=55.18 Aligned_cols=56 Identities=11% Similarity=0.131 Sum_probs=31.8
Q ss_pred cccccccccccccccccccccCCcccCCCCccEEeEecCCCccccccCCc-CCCCccceeeee
Q 037562 127 TFRELKELNLLQMQNLISFCSGNCAFTFPSLEILVVNYCPNMKIFSGGEL-STPNLHKVQLSR 188 (670)
Q Consensus 127 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~i~~C~~l~~~p~~~~-~~~~L~~l~i~~ 188 (670)
.+++|+.+.|. .+++.+..+ ....|++|+.+.+.+ +++.++.+.. .+ +|+.+.+.+
T Consensus 298 ~c~~L~~l~l~--~~i~~I~~~-aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 298 GCPKLARFEIP--ESIRILGQG-LLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEG 354 (401)
T ss_dssp TCTTCCEECCC--TTCCEECTT-TTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECC
T ss_pred CCccCCeEEeC--CceEEEhhh-hhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcC
Confidence 35566666665 245555443 244567777777742 4566654432 34 777776654
No 262
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=96.11 E-value=0.18 Score=45.50 Aligned_cols=144 Identities=17% Similarity=0.049 Sum_probs=104.2
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhC-CCchhHH
Q 037562 283 VPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVK-LLASPSVDVRKQTVWALGNVAG-DSPRCRD 360 (670)
Q Consensus 283 l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~-~~~~~~~ 360 (670)
++....+.+++. .++|..|+..|+.. ... ...++.+.. +..+++-.|++.+..++..++. ..++.
T Consensus 73 ~~la~~L~~~~~-deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-- 139 (240)
T 3l9t_A 73 KKLAFLAYQSDV-YQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-- 139 (240)
T ss_dssp HHHHHHHHTCSS-HHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--
T ss_pred HHHHHHHHhCcc-hHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--
Confidence 444455666777 79999999999887 311 124566666 5667899999999999999984 33331
Q ss_pred HHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCh
Q 037562 361 LVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTN 440 (670)
Q Consensus 361 ~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~ 440 (670)
.++.+.... .+.+..+++.|+..+.-.+.. + ........++|.+..+..+++.-|+..+.+.|..++..++
T Consensus 140 ------~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~P 210 (240)
T 3l9t_A 140 ------ALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFP 210 (240)
T ss_dssp ------THHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred ------HHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCH
Confidence 355566665 888999999998887654443 1 1122235577888888888899999999999999999888
Q ss_pred HHHHHHHH
Q 037562 441 DKVQAVIE 448 (670)
Q Consensus 441 ~~~~~~~~ 448 (670)
+....+++
T Consensus 211 d~V~~~~~ 218 (240)
T 3l9t_A 211 DLVKIELK 218 (240)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77665554
No 263
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.09 E-value=0.042 Score=55.59 Aligned_cols=35 Identities=14% Similarity=0.308 Sum_probs=23.2
Q ss_pred ccCCCCccEEeEecCCCccccccCCc-CCCCccceeee
Q 037562 151 AFTFPSLEILVVNYCPNMKIFSGGEL-STPNLHKVQLS 187 (670)
Q Consensus 151 ~~~~~~L~~L~i~~C~~l~~~p~~~~-~~~~L~~l~i~ 187 (670)
...|++|+.+.+. .+++.++.+.. .+++|+.+.|.
T Consensus 296 F~~c~~L~~l~l~--~~i~~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 296 LEGCPKLARFEIP--ESIRILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp TTTCTTCCEECCC--TTCCEECTTTTTTCCSCCEEEEC
T ss_pred hhCCccCCeEEeC--CceEEEhhhhhcCCCCccEEEEC
Confidence 3456778888776 35677766543 46788888773
No 264
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=95.84 E-value=0.00031 Score=70.60 Aligned_cols=158 Identities=13% Similarity=0.049 Sum_probs=84.7
Q ss_pred cccEEEeccCcCccccccccc-----ccCCCCcEEEEecCCCCccc--cCCCccccccceeeecccccccccccch---h
Q 037562 23 EVKISEAYNCYRLENILIEES-----SVMNNLVILCVHCCDHLINL--VPSSTSFQNLTNLVVSHCKRLKIVLTSS---I 92 (670)
Q Consensus 23 ~L~~L~i~~c~~l~~~~~~~~-----~~~~~L~~L~i~~c~~l~~~--~~~~~~~~~L~~L~i~~c~~l~~l~~~~---~ 92 (670)
+|+.|++++|. +........ ...++|++|++++|. +... ..-...+++|++|++++| .+....... .
T Consensus 73 ~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~ 149 (372)
T 3un9_A 73 SLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDL 149 (372)
T ss_dssp TCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHH
T ss_pred hCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHH
Confidence 67888888775 443221111 123688888888875 3221 111224667888888888 343321111 1
Q ss_pred h-hcccccceeccccccccceecccccccccccccccccccccccccccccccccc---CCcccCCCCccEEeEecCCCc
Q 037562 93 A-KTLVRLRYMEIESCDKITEIVLVDDVVAQDEVITFRELKELNLLQMQNLISFCS---GNCAFTFPSLEILVVNYCPNM 168 (670)
Q Consensus 93 ~-~~l~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~---~~~~~~~~~L~~L~i~~C~~l 168 (670)
+ ...++|++|++++|. +..... ..........++|++|.++++. +..... .......++|+.|++++|. +
T Consensus 150 L~~~~~~L~~L~Ls~n~-l~~~~~---~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i 223 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNP-LTAAGV---AVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-A 223 (372)
T ss_dssp HHSTTCCCCEEECCSSC-CHHHHH---HHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-C
T ss_pred HHhcCCccceeeCCCCC-CChHHH---HHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-C
Confidence 1 235778888888884 321100 0000112346778888888765 332110 0012345688889888884 3
Q ss_pred c-----ccccCCcCCCCccceeeeec
Q 037562 169 K-----IFSGGELSTPNLHKVQLSRW 189 (670)
Q Consensus 169 ~-----~~p~~~~~~~~L~~l~i~~~ 189 (670)
. .++......++|+.|++++.
T Consensus 224 ~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 224 GDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp CHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred CHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 3 22332334578888887654
No 265
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=95.79 E-value=0.064 Score=48.33 Aligned_cols=148 Identities=13% Similarity=0.053 Sum_probs=103.1
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHH-hcCCCCccchhHHHHHHHHhhc-CCchh
Q 037562 407 RPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVE-LLGHSSSSVLTPALRTIRNIVK-GDDFQ 484 (670)
Q Consensus 407 ~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~-~~~~~ 484 (670)
...++....+.+++..++|..|+.+|+.+ .... ..++.+.. +..++++.|+..++.+++.++. ..++
T Consensus 70 ~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe- 138 (240)
T 3l9t_A 70 EYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK- 138 (240)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-
Confidence 34555666677777889999999998887 2111 24556666 5567888999999999999885 3332
Q ss_pred hHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcC
Q 037562 485 TQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATK 564 (670)
Q Consensus 485 ~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 564 (670)
..++.+.....++ +..+|+.|...+.-.+.. +.... --.-+++.+-.+..+++..||+...++|..++.
T Consensus 139 -------~~l~~~~~W~~d~-n~~VRR~Ase~~rpW~~~-~~~k~--dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 139 -------KALPIIDEWLKSS-NLHTRRAATEGLRIWTNR-PYFKE--NPNEAIRRIADLKEDVSEYVRKSVGNALRDISK 207 (240)
T ss_dssp -------TTHHHHHHHHHCS-SHHHHHHHHHHTCSGGGS-TTTTT--CHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHT
T ss_pred -------HHHHHHHHHhcCC-CHHHHHHHHHhhHHHhcc-chhhc--CHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Confidence 2567788899999 999999998887654332 10000 001134555556668889999999999999999
Q ss_pred CCCHHHHHHHHHc
Q 037562 565 FGTHEQIKHLVRE 577 (670)
Q Consensus 565 ~~~~~~~~~l~~~ 577 (670)
. +|+-...+++.
T Consensus 208 ~-~Pd~V~~~~~~ 219 (240)
T 3l9t_A 208 K-FPDLVKIELKN 219 (240)
T ss_dssp T-CHHHHHHHHHT
T ss_pred h-CHHHHHHHHHH
Confidence 7 77766665553
No 266
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=95.01 E-value=0.23 Score=45.66 Aligned_cols=161 Identities=14% Similarity=0.105 Sum_probs=106.7
Q ss_pred hhhHHHHhCCChHHHHHhhcc----------CCchhHHHHHHHHHHHhhcCCHHHHHHHHh-cCChHHHHHHhhcCChhH
Q 037562 483 FQTQCIINCGALPYFLDMLVH----------NHEESIKKEVSWIISNITCGNREQIQAVID-SGLIGPIVNLLQNTEFDT 551 (670)
Q Consensus 483 ~~~~~l~~~~~~~~L~~~l~~----------~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v 551 (670)
...+.+ ..+|+..|+..|.. ..+......+..++..+.. +......++. .+.+..+...+.++++.+
T Consensus 35 ~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~ 112 (233)
T 2f31_A 35 SWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNM 112 (233)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHHHHHHTTCCTTSHHH
T ss_pred HHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHHHHHHHHhCCCCchH
Confidence 344444 34566666666532 1144667788888888854 4555555554 557888888888889999
Q ss_pred HHHHHHHHHHhcCCCCHHH-HH----H------HHHcCCcHHHHhhcc-CCChHHHHHHHHHHHHHHHhhhhhhccCCCC
Q 037562 552 KKEAAWAISNATKFGTHEQ-IK----H------LVREGCVKPLCDLLL-CADPKIVTVCLEGLENILKVGVAEMNTGTAV 619 (670)
Q Consensus 552 ~~~a~~aL~~l~~~~~~~~-~~----~------l~~~~~i~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 619 (670)
+..|+..|..++....++. .. . .-+..-+..+++.++ +.+.+.+..++..+..++...+...
T Consensus 113 r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~------ 186 (233)
T 2f31_A 113 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD------ 186 (233)
T ss_dssp HHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH------
T ss_pred HHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHH------
Confidence 9999988877776532111 11 1 122345667888776 4566788787777777776544322
Q ss_pred CCccHHHHHHHHhchHHHHHHhhcCCCHHHHHH
Q 037562 620 GDFNQYAQLVEEAEGLEKIENLQSHDDNGISEK 652 (670)
Q Consensus 620 ~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~ 652 (670)
..-..+..|...|..+.+..+...+++++...
T Consensus 187 -~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Q 218 (233)
T 2f31_A 187 -FRVHIRSELMRLGLHQVLQELREIENEDMKVQ 218 (233)
T ss_dssp -HHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHH
T ss_pred -HHHHHHHHHHHCChHHHHHHHhccCCHHHHHH
Confidence 23346777889999999999998888887655
No 267
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=94.97 E-value=0.14 Score=51.23 Aligned_cols=122 Identities=16% Similarity=0.201 Sum_probs=93.8
Q ss_pred chhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHh
Q 037562 506 EESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCD 585 (670)
Q Consensus 506 ~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ 585 (670)
+...++-|+..+..+...-|+. +...+..++++.+++|..||..|+..|-.++.. +.... +.+.|.+
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~l-----~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~---~~i~k-----iaDvL~Q 107 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPEL-----ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG---ENLPR-----VADILTQ 107 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGGG-----HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT---TCHHH-----HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhChhh-----HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh---hhhhh-----HHHHHHH
Confidence 6889999999999998877773 345678899999999999999999999999985 33333 5788999
Q ss_pred hccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562 586 LLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYW 661 (670)
Q Consensus 586 ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~ 661 (670)
+|..+++.-...+-++|..+++...... +..+ + .++.. .++.+++++.+.|....
T Consensus 108 lLqtdd~~E~~~V~~sL~sllk~Dpk~t-----------l~~l------f---~~i~~-~~e~~Rer~lkFi~~kl 162 (507)
T 3u0r_A 108 LLQTDDSAEFNLVNNALLSIFKMDAKGT-----------LGGL------F---SQILQ-GEDIVRERAIKFLSTKL 162 (507)
T ss_dssp HTTCCCHHHHHHHHHHHHHHHHHCHHHH-----------HHHH------H---HHHHH-SCHHHHHHHHHHHHHHG
T ss_pred HHhccchHHHHHHHHHHHHHHhcChHHH-----------HHHH------H---HHHcc-cchHHHHHHHHHHHHHH
Confidence 9999999888888999999998766533 1111 2 33333 35788888888886543
No 268
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.58 E-value=1.1 Score=51.28 Aligned_cols=172 Identities=16% Similarity=0.132 Sum_probs=108.5
Q ss_pred hHHHHHHhcc---cCChhHHHHHHHHHHhhh----cCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCCh
Q 037562 368 LIPLLAELNE---NANLSMLRTATWTLFNFC----RGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTN 440 (670)
Q Consensus 368 i~~Ll~~l~~---~~~~~~~~~a~~~L~~l~----~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~ 440 (670)
+..+..++.. ..++.++..+..+++.+. ...+......+..+...+...+...+.+-+..++.+|+|+...
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p-- 470 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP-- 470 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--
Confidence 4444555522 234556666666665554 3333323333456666777777788888889999999999742
Q ss_pred HHHHHHHHcCCHHHHHHhcCC-----C--CccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhcc-CCchhHHHH
Q 037562 441 DKVQAVIEAGVYPRLVELLGH-----S--SSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVH-NHEESIKKE 512 (670)
Q Consensus 441 ~~~~~~~~~~~i~~L~~lL~~-----~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~-~~~~~v~~~ 512 (670)
..++.+.+++.. . ...++..|+++|.+++...+...+ +.++++..+ ..++++|..
T Consensus 471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRia 533 (1056)
T 1lsh_A 471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIR 533 (1056)
T ss_dssp ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHH
T ss_pred ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHHH
Confidence 345667777642 1 224778899999999875544333 456666632 228899999
Q ss_pred HHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh-cCChhHHHHHHHHHHHhcCCCCH
Q 037562 513 VSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ-NTEFDTKKEAAWAISNATKFGTH 568 (670)
Q Consensus 513 a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~ 568 (670)
|+..|... ..+.. .+..+...+. +.+.+|.......|.+++....|
T Consensus 534 A~~~Lm~t-~P~~~---------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P 580 (1056)
T 1lsh_A 534 SCIVFFES-KPSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP 580 (1056)
T ss_dssp HHHHHHHT-CCCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHH-CcCHH---------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence 98888554 22222 2344455555 46778888888888888886554
No 269
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=94.58 E-value=2.8 Score=38.70 Aligned_cols=101 Identities=10% Similarity=0.060 Sum_probs=71.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHH
Q 037562 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKV 319 (670)
Q Consensus 240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 319 (670)
+-.+++..+....+.+...+.....++...+..... .+++.++++..+++ .++|...+..+...+...++...
T Consensus 17 v~~lln~A~~~~~~~kl~~L~qa~el~~~~dp~ll~-----~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~- 89 (257)
T 3gs3_A 17 VVDWCNELVIASPSTKCELLAKVQETVLGSCAELAE-----EFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLP- 89 (257)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-
T ss_pred HHHHHHHhhhcCcHHHHHHHHHHHHHHHccCHhHHH-----HHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHH-
Confidence 344555555433368888888888877664222222 25777788776766 89999999999998864444332
Q ss_pred HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 037562 320 VIDHGAVPIFVKLLASPSVDVRKQTVWALGNV 351 (670)
Q Consensus 320 i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l 351 (670)
..++.|..+++++++.+...++.+..++
T Consensus 90 ----~~l~~L~~Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 90 ----HVINVVSMLLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp ----HHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3467888889999999999988888776
No 270
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=94.48 E-value=2.3 Score=48.78 Aligned_cols=166 Identities=16% Similarity=0.136 Sum_probs=109.6
Q ss_pred hHHHHHhhCC----CCHHHHHHHHHHHHHhh----CCCchhHHHHHhcCChHHHHHHhc---ccCChhHHHHHHHHHHhh
Q 037562 326 VPIFVKLLAS----PSVDVRKQTVWALGNVA----GDSPRCRDLVLSQGALIPLLAELN---ENANLSMLRTATWTLFNF 394 (670)
Q Consensus 326 i~~L~~lL~~----~~~~v~~~a~~~L~~l~----~~~~~~~~~i~~~~~i~~Ll~~l~---~~~~~~~~~~a~~~L~~l 394 (670)
+..+..++.+ .++.+++.|+-+++.+. ...+.+.. ..++.+.+.+. ...+.+-+..++.+|.|+
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~-----~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPD-----ELLQPLHDLLSQSSDRAKEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCG-----GGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCH-----HHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc
Confidence 4566666765 56778888888887775 22222111 12344444332 344566677899999999
Q ss_pred hcCCCCCChhhhhhhHHHHHHhhcc-------CChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcC--CCCcc
Q 037562 395 CRGKPQPPFNQVRPALPVLAQLIRS-------NDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLG--HSSSS 465 (670)
Q Consensus 395 ~~~~~~~~~~~~~~~i~~L~~lL~~-------~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~ 465 (670)
... ..++.+.+++.. ....++..|+++|..++...+...+ +.+.++.. ..+.+
T Consensus 468 g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~E 529 (1056)
T 1lsh_A 468 GQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSE 529 (1056)
T ss_dssp TCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHH
T ss_pred CCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChH
Confidence 863 356777777742 1356889999999999876654444 55667763 35667
Q ss_pred chhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCC
Q 037562 466 VLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGN 524 (670)
Q Consensus 466 v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~ 524 (670)
+|..|+..|... +|.. ..+..+...+..+++..|.......|.+++...
T Consensus 530 vRiaA~~~Lm~t---~P~~-------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~ 578 (1056)
T 1lsh_A 530 LRIRSCIVFFES---KPSV-------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 578 (1056)
T ss_dssp HHHHHHHHHHHT---CCCH-------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHH---CcCH-------HHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcC
Confidence 888888777432 2221 135567777777668899999999999998753
No 271
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.34 E-value=1.4 Score=42.10 Aligned_cols=123 Identities=13% Similarity=0.089 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhc---ccCChhHHHHHHHHHHhhhcCC-CCCChhhhhhhHH
Q 037562 336 PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELN---ENANLSMLRTATWTLFNFCRGK-PQPPFNQVRPALP 411 (670)
Q Consensus 336 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~---~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~ 411 (670)
..+..+-.++++++|+..... .++.+.. ....++..+. .+.+..++..++..+.|++-.. ..........++.
T Consensus 160 ~~p~n~ml~lR~l~NlF~~~~-g~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~ 236 (304)
T 3ebb_A 160 GKPANQLLALRTFCNCFVGQA-GQKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLS 236 (304)
T ss_dssp SCHHHHHHHHHHHHHGGGSHH-HHHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHccCCch-hHHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHH
Confidence 456678899999999986644 5555554 2344444432 3456788888888888888543 1112222334555
Q ss_pred HHHHhhc-cCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCC
Q 037562 412 VLAQLIR-SNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGH 461 (670)
Q Consensus 412 ~L~~lL~-~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~ 461 (670)
.+..+++ ..|.+....++.+++++...+.+..+.....|+-..+-+..+.
T Consensus 237 ~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 237 LISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence 5566665 3588999999999999997755444433333444444444444
No 272
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=94.34 E-value=0.0035 Score=62.89 Aligned_cols=138 Identities=11% Similarity=0.078 Sum_probs=83.0
Q ss_pred cCCCCcEEEEecCCCCccccC-----CC-ccccccceeeecccccccccccchhhhcccccceeccccccccceeccccc
Q 037562 45 VMNNLVILCVHCCDHLINLVP-----SS-TSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDD 118 (670)
Q Consensus 45 ~~~~L~~L~i~~c~~l~~~~~-----~~-~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~ 118 (670)
.+++|+.|++++|. +..... .. ...++|++|++++|. +...........+++|++|++++|. +.....
T Consensus 70 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~--- 143 (372)
T 3un9_A 70 VLSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNS-LGPEAC--- 143 (372)
T ss_dssp HHTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSC-CCHHHH---
T ss_pred HHhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCC-CCHHHH---
Confidence 35789999999986 432211 11 123689999999994 4332112234467899999999984 321100
Q ss_pred ccccccc-ccccccccccccccccccccccC---CcccCCCCccEEeEecCCCcc-----ccccCCcCCCCccceeeeec
Q 037562 119 VVAQDEV-ITFRELKELNLLQMQNLISFCSG---NCAFTFPSLEILVVNYCPNMK-----IFSGGELSTPNLHKVQLSRW 189 (670)
Q Consensus 119 ~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~---~~~~~~~~L~~L~i~~C~~l~-----~~p~~~~~~~~L~~l~i~~~ 189 (670)
....... ...++|++|.+++|. ++..... .....+++|++|++++|. +. .++......++|+.|+++++
T Consensus 144 ~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 144 KDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred HHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 0000001 135789999999984 4332110 012357899999999986 33 23444455679999998764
Q ss_pred c
Q 037562 190 D 190 (670)
Q Consensus 190 ~ 190 (670)
.
T Consensus 222 ~ 222 (372)
T 3un9_A 222 G 222 (372)
T ss_dssp C
T ss_pred C
Confidence 3
No 273
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=94.08 E-value=5.8 Score=46.30 Aligned_cols=300 Identities=9% Similarity=0.046 Sum_probs=166.9
Q ss_pred HHHHHHHhcCC--ChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhc-CCCCHHHHHHHHHHHHHHcCC----
Q 037562 240 LPAMVDGVWSD--DNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLM-RQDYPQLQFKAAWALTNIASG---- 312 (670)
Q Consensus 240 i~~l~~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~-~~~~~~v~~~a~~~L~~l~~~---- 312 (670)
+..+++...++ +.+.+.+|-..|.++-.. .+ ....+...|. ...++.+|..|+..|.+....
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~--p~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~ 81 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEK--CP---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNG 81 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH--CT---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhC--ch---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhccc
Confidence 44555444444 667788888888777433 11 3344444343 333389999999999987642
Q ss_pred -ChhhHHHHHhCCChHHHHHhhCC---CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHH
Q 037562 313 -TSENTKVVIDHGAVPIFVKLLAS---PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTAT 388 (670)
Q Consensus 313 -~~~~~~~i~~~~~i~~L~~lL~~---~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~ 388 (670)
+++.+..+. ..+++.+...... .+..++...+.++..++...-.. . -.+.++.++..+.. ++.....++
T Consensus 82 l~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~--~--Wp~ll~~L~~~~~~--~~~~~e~~L 154 (1204)
T 3a6p_A 82 MSRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ--H--WPDMLIELDTLSKQ--GETQTELVM 154 (1204)
T ss_dssp SCHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT--T--CTTHHHHHHHHHHT--CHHHHHHHH
T ss_pred CCHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc--c--chHHHHHHHHHhcC--CHHHHHHHH
Confidence 344444443 3344444433211 46889999999999887432110 0 12356777777733 445567788
Q ss_pred HHHHhhhcCC---CCCChhh-------h----hhhHHHHHHhhcc-------------------CChhHHHHHHHHHHHh
Q 037562 389 WTLFNFCRGK---PQPPFNQ-------V----RPALPVLAQLIRS-------------------NDEEVLTDACWALSYL 435 (670)
Q Consensus 389 ~~L~~l~~~~---~~~~~~~-------~----~~~i~~L~~lL~~-------------------~~~~v~~~al~~L~~l 435 (670)
.+|..++... ....... . ..+++.+..++.. .+..++..++.++.+.
T Consensus 155 ~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~ 234 (1204)
T 3a6p_A 155 FILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGY 234 (1204)
T ss_dssp HHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHH
Confidence 8888876541 1111110 0 1333444444432 1245677788888776
Q ss_pred ccCChHHHHHHHHcC--CHHHHHHhcCCCCccchhHHHHHHHHhhcCCc--hhhHHHHhC---CChHHHHHhhc------
Q 037562 436 SDGTNDKVQAVIEAG--VYPRLVELLGHSSSSVLTPALRTIRNIVKGDD--FQTQCIINC---GALPYFLDMLV------ 502 (670)
Q Consensus 436 ~~~~~~~~~~~~~~~--~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~--~~~~~l~~~---~~~~~L~~~l~------ 502 (670)
..-.+. ..+.+.. +++.+..++. +++++..|+.+|..++.... .....++.. ..+..++....
T Consensus 235 l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~ 310 (1204)
T 3a6p_A 235 IDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGG 310 (1204)
T ss_dssp TTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCS
T ss_pred HhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCC
Confidence 543331 2233332 6677776665 46799999999999987442 211112211 11233444432
Q ss_pred -cCCchhHHHHHHHHHHHhhcCCHHHHHHHHh-----------cCChHHHHHHhhcCChhHHHHHHHHHHHhcCC
Q 037562 503 -HNHEESIKKEVSWIISNITCGNREQIQAVID-----------SGLIGPIVNLLQNTEFDTKKEAAWAISNATKF 565 (670)
Q Consensus 503 -~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-----------~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 565 (670)
++.+.++.+..+..+..+.. . ...++. .++++.++.+..+++..+...++.....+...
T Consensus 311 ~~e~d~e~~k~l~~ll~~lg~---~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 311 LVEKHYVFLKRLCQVLCALGN---Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH---H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred CccHHHHHHHHHHHHHHHHHH---H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 11145667777777777652 1 112211 13577777777777777877777766656543
No 274
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.97 E-value=0.66 Score=46.12 Aligned_cols=161 Identities=14% Similarity=0.100 Sum_probs=109.3
Q ss_pred hhhHHHHhCCChHHHHHhhcc----------CCchhHHHHHHHHHHHhhcCCHHHHHHHHh-cCChHHHHHHhhcCChhH
Q 037562 483 FQTQCIINCGALPYFLDMLVH----------NHEESIKKEVSWIISNITCGNREQIQAVID-SGLIGPIVNLLQNTEFDT 551 (670)
Q Consensus 483 ~~~~~l~~~~~~~~L~~~l~~----------~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v 551 (670)
..++.+. .+|+..|+.+|.. ..+...+..+..++..+.. +......++. ...+..+...+.+..+.+
T Consensus 101 sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~ 178 (383)
T 3eg5_B 101 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNM 178 (383)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHH
T ss_pred HHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhc-chhhHHHHHcChHHHHHHHHHhCCCchHH
Confidence 4455554 4567777777641 1144677788888888854 4555555554 557888999998999999
Q ss_pred HHHHHHHHHHhcCCCCHHH-HHHH----------HHcCCcHHHHhhccC-CChHHHHHHHHHHHHHHHhhhhhhccCCCC
Q 037562 552 KKEAAWAISNATKFGTHEQ-IKHL----------VREGCVKPLCDLLLC-ADPKIVTVCLEGLENILKVGVAEMNTGTAV 619 (670)
Q Consensus 552 ~~~a~~aL~~l~~~~~~~~-~~~l----------~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 619 (670)
+..|...|..++....++. ...+ -+..-+..+++.++. .+.+.+..++..+..++...+...
T Consensus 179 ~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~------ 252 (383)
T 3eg5_B 179 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD------ 252 (383)
T ss_dssp HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH------
T ss_pred HHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHH------
Confidence 9999999988876533111 1111 234457788888876 577888888887777776543322
Q ss_pred CCccHHHHHHHHhchHHHHHHhhcCCCHHHHHH
Q 037562 620 GDFNQYAQLVEEAEGLEKIENLQSHDDNGISEK 652 (670)
Q Consensus 620 ~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~ 652 (670)
..-..+..|..+|..+.+..+...+++++...
T Consensus 253 -~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~Q 284 (383)
T 3eg5_B 253 -FRVHIRSELMRLGLHQVLQELREIENEDMKVQ 284 (383)
T ss_dssp -HHHHHHHHHHHTTHHHHHHHHTTSCCHHHHHH
T ss_pred -HHHHHHHHHHHCChHHHHHHHhcCCChhHHHH
Confidence 23346777889999999999988788876643
No 275
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=93.65 E-value=0.55 Score=44.42 Aligned_cols=314 Identities=16% Similarity=0.192 Sum_probs=174.9
Q ss_pred HHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccC
Q 037562 300 FKAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENA 379 (670)
Q Consensus 300 ~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~ 379 (670)
..+...|. +..++....+.++..+++..+...+.-++.++....+..|...+....-+..-+ ...+|-++..+..+.
T Consensus 261 tR~FDLL~-LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~h~ 337 (619)
T 3c2g_A 261 IRTFDLLG-LLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEIHP 337 (619)
T ss_dssp HHHHHHHH-HHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHHCC
T ss_pred HHHHHHHH-HHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhccCC
Confidence 33444444 445589999999999999999999999999999999999998874432221111 134777888888888
Q ss_pred ChhHHHHHHHHHHhhhcCC-CCCChhhhhhhHHHHHHhhcc-------CChhHHHHHHHHHHHhccC-------------
Q 037562 380 NLSMLRTATWTLFNFCRGK-PQPPFNQVRPALPVLAQLIRS-------NDEEVLTDACWALSYLSDG------------- 438 (670)
Q Consensus 380 ~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~i~~L~~lL~~-------~~~~v~~~al~~L~~l~~~------------- 438 (670)
+.++.....+.|+|...+. +.+......++++.+-..+.. .+..-+..++.+++|-.+.
T Consensus 338 eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~N 417 (619)
T 3c2g_A 338 DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPN 417 (619)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTT
T ss_pred CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCC
Confidence 9999999999999999887 444455557888888776642 1333344444444332210
Q ss_pred ------Ch-H--HHHHHHHcCCHHHHHHhcCCCCc------cchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhcc
Q 037562 439 ------TN-D--KVQAVIEAGVYPRLVELLGHSSS------SVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVH 503 (670)
Q Consensus 439 ------~~-~--~~~~~~~~~~i~~L~~lL~~~~~------~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~ 503 (670)
.+ + +...+++.+++..++.+|+-+.- ++|...++..--+... +..-+ .++ .....+
T Consensus 418 Gqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlRT-P~~Pk----d~~----l~VtDd 488 (619)
T 3c2g_A 418 GETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLRT-PFVPK----DGV----LNVIDE 488 (619)
T ss_dssp SCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHTC-TTSCC----TTG----GGCCCT
T ss_pred CccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhcC-CCCch----hhh----ccccch
Confidence 01 1 11224444677777777765432 2444455444433332 11100 111 111111
Q ss_pred CCchhHHHHHH----HHHHHhhc-CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcC
Q 037562 504 NHEESIKKEVS----WIISNITC-GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREG 578 (670)
Q Consensus 504 ~~~~~v~~~a~----~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~ 578 (670)
.....+.-..+ |+.+.=.. ...+..+.+++ ..+..|+.+++.-..+. +++..+..
T Consensus 489 ~rk~NLvGHIciA~sWa~~Q~tNertqdTkqQLiE-R~fSLL~~LmEQc~~E~--qVAh~~Ys----------------- 548 (619)
T 3c2g_A 489 NRKENLIGHICAAYSWVFRQPNNTRTQSTKQQLVE-RTISLLLVLMEQCGAEK--EVAQYSYS----------------- 548 (619)
T ss_dssp TTCCCHHHHHHHHHHHHHHSCCCTTTHHHHHHHHH-HHHHHHHHHHHHTTCHH--HHHHTTTT-----------------
T ss_pred hhhhhhHHHHHHHHHHhhcCccccchhhHHHHHHH-HHHHHHHHHHHHhhhHH--HHHhheee-----------------
Confidence 11122222233 33222211 23344555554 35566666665322221 11111111
Q ss_pred CcHHHHhhccCC--ChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHH
Q 037562 579 CVKPLCDLLLCA--DPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEI 656 (670)
Q Consensus 579 ~i~~L~~ll~~~--~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~ 656 (670)
+..=..++++. .|.....++..-..+++.++..... - .-.-..++-+.+|+++++.+.|..+
T Consensus 549 -IsCPLnlLn~nQ~KP~FI~NVL~VcDKILeHcP~~Ad~-------------W--~i~r~tle~l~NHsNsDIa~aasSL 612 (619)
T 3c2g_A 549 -IDCPLNLLNGNQVKPTFIHNVLVVCDKILEHCPTRADI-------------W--TIDRPMLEGLTNHRNSDIAKAANSL 612 (619)
T ss_dssp -SCCGGGGGSSCCCCHHHHHHHHHHHHHHHHHCTTHHHH-------------S--CCCHHHHHHHHTCSSHHHHHHHHHH
T ss_pred -ccCchhhhcccccChHHHHHHHHHHHHHHHhCcchhcc-------------c--eechHHHHHHhcCCCchHHHHHHHH
Confidence 22223455443 4566667777777777655432210 0 0012446788999999999988888
Q ss_pred HHHhc
Q 037562 657 LETYW 661 (670)
Q Consensus 657 l~~~~ 661 (670)
+.++-
T Consensus 613 L~rfP 617 (619)
T 3c2g_A 613 LSRFP 617 (619)
T ss_dssp HTTSC
T ss_pred HHhCC
Confidence 87653
No 276
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=92.80 E-value=5.7 Score=39.05 Aligned_cols=88 Identities=9% Similarity=0.104 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHh
Q 037562 253 SLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKL 332 (670)
Q Consensus 253 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~l 332 (670)
+.+...+..+.+++-+.+.. .-..+++.++++-.+++ .++|..++..|...+....+... .+++.|..+
T Consensus 40 ~~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~L 108 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLL-----KLIANLNML 108 (386)
T ss_dssp THHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence 46888888888875542121 22458999999988888 89999999999998864444332 346788888
Q ss_pred hCCCCHHHHHHHHHHHHHh
Q 037562 333 LASPSVDVRKQTVWALGNV 351 (670)
Q Consensus 333 L~~~~~~v~~~a~~~L~~l 351 (670)
+.++++.+...++.+.+++
T Consensus 109 L~d~d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 109 LRDENVNVVKKAILTMTQL 127 (386)
T ss_dssp HTCSSHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHH
Confidence 9889999999988888876
No 277
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=92.61 E-value=4.6 Score=36.81 Aligned_cols=123 Identities=11% Similarity=0.136 Sum_probs=77.8
Q ss_pred HHHHHHcCCHHHHHHhhcC----C------CCHHHHHHHHHHHHHHcCCChhhHHHHHh-CCChHHHHHhhCCCCHHHHH
Q 037562 274 IDEVIQSGVVPRFVEFLMR----Q------DYPQLQFKAAWALTNIASGTSENTKVVID-HGAVPIFVKLLASPSVDVRK 342 (670)
Q Consensus 274 ~~~~~~~g~l~~L~~ll~~----~------~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~~~i~~L~~lL~~~~~~v~~ 342 (670)
++.+ ..+++..|+..|.. . ...+.+..+++||..+.. +....+.++. .+++..+...+.++++.++.
T Consensus 37 v~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~ 114 (233)
T 2f31_A 37 VQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMI 114 (233)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHH
T ss_pred HHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHHHHHHHHhCCCCchHHH
Confidence 3444 34556666665532 1 115778899999999987 5555665554 56789999999999999999
Q ss_pred HHHHHHHHhhCCCc-hh-HHHHH----------hcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCC
Q 037562 343 QTVWALGNVAGDSP-RC-RDLVL----------SQGALIPLLAELNENANLSMLRTATWTLFNFCRGK 398 (670)
Q Consensus 343 ~a~~~L~~l~~~~~-~~-~~~i~----------~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~ 398 (670)
.++..|..+|.... .. ...+. +..-+.+++..+....+.+.+..++..+..+....
T Consensus 115 ~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~ 182 (233)
T 2f31_A 115 DAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPA 182 (233)
T ss_dssp HHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCC
Confidence 99999998886543 22 22222 22235556666644445555555555555555543
No 278
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=92.16 E-value=2 Score=42.78 Aligned_cols=161 Identities=13% Similarity=0.091 Sum_probs=105.6
Q ss_pred hhhHHHHhCCChHHHHHhhcc----C------CchhHHHHHHHHHHHhhcCCHHHHHHHHh-cCChHHHHHHhhcCChhH
Q 037562 483 FQTQCIINCGALPYFLDMLVH----N------HEESIKKEVSWIISNITCGNREQIQAVID-SGLIGPIVNLLQNTEFDT 551 (670)
Q Consensus 483 ~~~~~l~~~~~~~~L~~~l~~----~------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v 551 (670)
...+.+. .+|+..|+.+|.. . .+......+..+|..+.. +......++. .+.+..+...+.+.++.+
T Consensus 39 ~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~ 116 (386)
T 2bnx_A 39 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNM 116 (386)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHHHHHHTCCTTSHHH
T ss_pred HHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHHHHHHHHhCCCCchH
Confidence 3344443 3555555555531 1 145667788888888854 3445555554 567888888888888999
Q ss_pred HHHHHHHHHHhcCCCCHHH-HHH----------HHHcCCcHHHHhhcc-CCChHHHHHHHHHHHHHHHhhhhhhccCCCC
Q 037562 552 KKEAAWAISNATKFGTHEQ-IKH----------LVREGCVKPLCDLLL-CADPKIVTVCLEGLENILKVGVAEMNTGTAV 619 (670)
Q Consensus 552 ~~~a~~aL~~l~~~~~~~~-~~~----------l~~~~~i~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 619 (670)
+..++..|..++....+.. ... .-+..-+..+++.++ +.+.+.+..++..+..++...+...
T Consensus 117 r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~------ 190 (386)
T 2bnx_A 117 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD------ 190 (386)
T ss_dssp HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHH------
T ss_pred HHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHH------
Confidence 9999888877776533111 111 122345667777776 5566788787777777776554322
Q ss_pred CCccHHHHHHHHhchHHHHHHhhcCCCHHHHHH
Q 037562 620 GDFNQYAQLVEEAEGLEKIENLQSHDDNGISEK 652 (670)
Q Consensus 620 ~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~ 652 (670)
.....+..|..+|..+.+..+....++++...
T Consensus 191 -~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 191 -FRVHIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp -HHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred -HHHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 23456788889999999999988888887655
No 279
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=92.10 E-value=5.4 Score=39.53 Aligned_cols=156 Identities=11% Similarity=0.081 Sum_probs=98.1
Q ss_pred HHHHHHhcCCCh-HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcC-----------CCCHHHHHHHHHHHHH
Q 037562 241 PAMVDGVWSDDN-SLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMR-----------QDYPQLQFKAAWALTN 308 (670)
Q Consensus 241 ~~l~~~l~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~-----------~~~~~v~~~a~~~L~~ 308 (670)
..+++.|+++.. .-....+..|+.........-++.++ .+++..|+.+|.. .+ ...+..+++||..
T Consensus 69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d-~~~q~~~l~CLka 146 (383)
T 3eg5_B 69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYD-SRNQHEIIRCLKA 146 (383)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------C-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhh-HHHHHHHHHHHHH
Confidence 445666664432 22233455555444433223356665 5677888877741 13 5788999999999
Q ss_pred HcCCChhhHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCc-hh-HHHHH----------hcCChHHHHHHh
Q 037562 309 IASGTSENTKVVI-DHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSP-RC-RDLVL----------SQGALIPLLAEL 375 (670)
Q Consensus 309 l~~~~~~~~~~i~-~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~-~~~i~----------~~~~i~~Ll~~l 375 (670)
+.. +......++ ....+..+...+.++++.++..|+..|..+|.... .. ...+. +..-+.+++..+
T Consensus 147 lmN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L 225 (383)
T 3eg5_B 147 FMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGL 225 (383)
T ss_dssp HTS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTT
T ss_pred Hhc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 987 555565555 45788999999999999999999999999996543 22 22322 223466677777
Q ss_pred cccCChhHHHHHHHHHHhhhcCCC
Q 037562 376 NENANLSMLRTATWTLFNFCRGKP 399 (670)
Q Consensus 376 ~~~~~~~~~~~a~~~L~~l~~~~~ 399 (670)
....+.+.+..++..+..+....+
T Consensus 226 ~~~~~~e~~~~~m~lIN~li~~~~ 249 (383)
T 3eg5_B 226 KSGTSIALKVGCLQLINALITPAE 249 (383)
T ss_dssp STTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HccCcHHHHHHHHHHHHHHHcCCC
Confidence 544555666655555555555543
No 280
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=91.87 E-value=4.2 Score=47.48 Aligned_cols=284 Identities=10% Similarity=0.042 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHHHHcCCChhhHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCC-----CchhHHHHHhcCCh
Q 037562 296 PQLQFKAAWALTNIASGTSENTKVVIDHGAVPIFVKLL--ASPSVDVRKQTVWALGNVAGD-----SPRCRDLVLSQGAL 368 (670)
Q Consensus 296 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~L~~lL--~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~i~~~~~i 368 (670)
...|.+|-..|..+-. ++ .+...+...| .+.+..+|..|+..|.+.... +++.+..+.
T Consensus 27 ~~~r~~Ae~~L~~~~~-~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir----- 91 (1204)
T 3a6p_A 27 QRYRLEALKFCEEFKE-KC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK----- 91 (1204)
T ss_dssp HHHHHHHHHHHHHHHH-HC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-----
T ss_pred hHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-----
Confidence 6788888888888754 22 2334444433 456889999999999987632 223333332
Q ss_pred HHHHHHhccc------CChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccC----
Q 037562 369 IPLLAELNEN------ANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDG---- 438 (670)
Q Consensus 369 ~~Ll~~l~~~------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~---- 438 (670)
..++..+... .+..++..++.+++.++...-. ......++.++.++++ ++..+..++.+|..+++.
T Consensus 92 ~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p---~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~ 167 (1204)
T 3a6p_A 92 NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP---QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTF 167 (1204)
T ss_dssp HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST---TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc---ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccc
Confidence 2344444322 3567788889899988866411 1235678888888866 556677777777777532
Q ss_pred ---ChHHHHH----HHHc--CCHHHHHHhcCC-------------------CCccchhHHHHHHHHhhcCCchhhHHHHh
Q 037562 439 ---TNDKVQA----VIEA--GVYPRLVELLGH-------------------SSSSVLTPALRTIRNIVKGDDFQTQCIIN 490 (670)
Q Consensus 439 ---~~~~~~~----~~~~--~~i~~L~~lL~~-------------------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~ 490 (670)
...+... +.+. .++..+..++.. .+..++..++.++.+...--+ ...+++
T Consensus 168 ~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~--~~~i~~ 245 (1204)
T 3a6p_A 168 QTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVS--MSHITA 245 (1204)
T ss_dssp CCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSC--HHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccC--HHHHHh
Confidence 1111111 1111 223333333322 122356667777766544222 222334
Q ss_pred CC--ChHHHHHhhccCCchhHHHHHHHHHHHhhcCC--HHHHHHHHhc---CChHHHHHHhh--------cCChhHHHHH
Q 037562 491 CG--ALPYFLDMLVHNHEESIKKEVSWIISNITCGN--REQIQAVIDS---GLIGPIVNLLQ--------NTEFDTKKEA 555 (670)
Q Consensus 491 ~~--~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~l~~~---~~i~~L~~ll~--------~~~~~v~~~a 555 (670)
.. .++.+..++. +++++..|+.+|..++... ++....++.. ..+..++.... +.+.++.+..
T Consensus 246 ~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l 322 (1204)
T 3a6p_A 246 ENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRL 322 (1204)
T ss_dssp TTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHH
T ss_pred ccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHH
Confidence 33 6677776665 4578999999999998732 3333323321 11234444432 1235666666
Q ss_pred HHHHHHhcCCCCHHHHHHHHH-----------cCCcHHHHhhccCCChHHHHHHHHHHHHHHHh
Q 037562 556 AWAISNATKFGTHEQIKHLVR-----------EGCVKPLCDLLLCADPKIVTVCLEGLENILKV 608 (670)
Q Consensus 556 ~~aL~~l~~~~~~~~~~~l~~-----------~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~ 608 (670)
+..+..+.. . ...++. .+.++.+..+..+++..+...++..-..+++.
T Consensus 323 ~~ll~~lg~----~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~ 381 (1204)
T 3a6p_A 323 CQVLCALGN----Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH 381 (1204)
T ss_dssp HHHHHHHHH----H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHH----H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence 766666652 1 111111 12466666666777777666666554444443
No 281
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=91.58 E-value=1.3 Score=42.24 Aligned_cols=152 Identities=9% Similarity=0.032 Sum_probs=91.1
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcC----CHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCChh
Q 037562 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSG----VVPRFVEFLMRQDYPQLQFKAAWALTNIASGTSE 315 (670)
Q Consensus 240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g----~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~ 315 (670)
+..+.+.+ +=..+.++.++..++-++.+ ......+.+.+ ++..+...+.++..+..+..++++++|+.. ++.
T Consensus 105 l~~l~kil-~WP~~~~fPvLDLlRl~~l~--p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~ 180 (304)
T 3ebb_A 105 LQILWKAI-NCPEDIVFPALDILRLSIKH--PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFV-GQA 180 (304)
T ss_dssp HHHHHHHH-TSCTTTCHHHHHHHHHHTTS--HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGG-SHH
T ss_pred HHHHHHHH-cCCHHhHHHHHHHHHHHHcC--ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccC-Cch
Confidence 34445544 22335667777777766543 22222222222 222344445444347789999999999998 677
Q ss_pred hHHHHHhC--CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchh--HHHHHhcCChHHHHHHhcccCChhHHHHHHHHH
Q 037562 316 NTKVVIDH--GAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRC--RDLVLSQGALIPLLAELNENANLSMLRTATWTL 391 (670)
Q Consensus 316 ~~~~i~~~--~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~--~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L 391 (670)
.++.+... .+++.+...+.+++..++..++..+.|++...... .+.... .+..+...+....|.+...-++.+|
T Consensus 181 g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~--ll~~l~~il~~~~d~EalyR~LvAL 258 (304)
T 3ebb_A 181 GQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQ--CLSLISTILEVVQDLEATFRLLVAL 258 (304)
T ss_dssp HHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHH--HHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHH--HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 77776643 24445555556678999999999999998321000 011101 2334445554556778888888888
Q ss_pred HhhhcC
Q 037562 392 FNFCRG 397 (670)
Q Consensus 392 ~~l~~~ 397 (670)
.++...
T Consensus 259 GtL~~~ 264 (304)
T 3ebb_A 259 GTLISD 264 (304)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 888865
No 282
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=90.23 E-value=0.1 Score=49.04 Aligned_cols=36 Identities=25% Similarity=0.307 Sum_probs=15.5
Q ss_pred ccccceeeeccccccccccc-chhhhcccccceecccc
Q 037562 70 FQNLTNLVVSHCKRLKIVLT-SSIAKTLVRLRYMEIES 106 (670)
Q Consensus 70 ~~~L~~L~i~~c~~l~~l~~-~~~~~~l~~L~~L~i~~ 106 (670)
||+|+.|++++. ++..+.. +.....+|+|+.|++++
T Consensus 169 l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~ 205 (267)
T 3rw6_A 169 IPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSG 205 (267)
T ss_dssp CTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTT
T ss_pred CCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCC
Confidence 455555555544 2322211 11233455555555543
No 283
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=88.37 E-value=19 Score=35.58 Aligned_cols=124 Identities=10% Similarity=0.117 Sum_probs=81.1
Q ss_pred HHHHHHcCCHHHHHHhhcC----C------CCHHHHHHHHHHHHHHcCCChhhHHHHH-hCCChHHHHHhhCCCCHHHHH
Q 037562 274 IDEVIQSGVVPRFVEFLMR----Q------DYPQLQFKAAWALTNIASGTSENTKVVI-DHGAVPIFVKLLASPSVDVRK 342 (670)
Q Consensus 274 ~~~~~~~g~l~~L~~ll~~----~------~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~~~i~~L~~lL~~~~~~v~~ 342 (670)
++.+. .+++..|+..|.. . .....+..+++||..+.. +......++ ..+++..+...+.++++.++.
T Consensus 41 v~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~ 118 (386)
T 2bnx_A 41 VQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMI 118 (386)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHH
T ss_pred HHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHHHHHHHHhCCCCchHHH
Confidence 34443 4556666665531 1 125788899999999987 555555555 456889999999999999999
Q ss_pred HHHHHHHHhhCCCc-hh-HHHHH----------hcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCC
Q 037562 343 QTVWALGNVAGDSP-RC-RDLVL----------SQGALIPLLAELNENANLSMLRTATWTLFNFCRGKP 399 (670)
Q Consensus 343 ~a~~~L~~l~~~~~-~~-~~~i~----------~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~ 399 (670)
.++..|..+|.... .. ...+. +..-+.+++..+..+.+.+.+..++..+..+....+
T Consensus 119 ~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~ 187 (386)
T 2bnx_A 119 DAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAE 187 (386)
T ss_dssp HHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCC
Confidence 99999988886543 22 22222 223466677777555566666665555555666543
No 284
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=87.91 E-value=1.6 Score=35.83 Aligned_cols=77 Identities=13% Similarity=0.162 Sum_probs=55.3
Q ss_pred CcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHH-HHhchHHHHHHhhcCCC--------HHH
Q 037562 579 CVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLV-EEAEGLEKIENLQSHDD--------NGI 649 (670)
Q Consensus 579 ~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~l~~L~~~~~--------~~v 649 (670)
+.+.|.+-+++.++.++.+++.+|..++..+... +...+ .....|..+.++...++ ..|
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~------------f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~V 117 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSE------------FRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAV 117 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHH------------HHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHH
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHH------------HHHHHHHhHHHHHHHHhcCCCCCcccccchhHHH
Confidence 5677888888889999999999999998765432 33333 33333444544443333 679
Q ss_pred HHHHHHHHHHhcCCcccc
Q 037562 650 SEKAVEILETYWSSRVIG 667 (670)
Q Consensus 650 ~~~a~~~l~~~~~~~~~~ 667 (670)
+..|.++++-+|+++.+.
T Consensus 118 R~~AkEl~~ll~d~~~~~ 135 (140)
T 1vdy_A 118 RETAHETISAIFSEENGS 135 (140)
T ss_dssp HHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHhCcCCCC
Confidence 999999999999988765
No 285
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=87.37 E-value=1.4 Score=36.50 Aligned_cols=74 Identities=7% Similarity=-0.021 Sum_probs=59.2
Q ss_pred ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhh
Q 037562 536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVG 609 (670)
Q Consensus 536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~ 609 (670)
++..+..-+.++++.++..|+..|-.+..++.+.....+.....+..|..+++..++.|+..++..+.......
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f 116 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEF 116 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHh
Confidence 34556667788899999999999999999888777766666667777888887788999999999998876543
No 286
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=86.66 E-value=0.11 Score=46.00 Aligned_cols=63 Identities=8% Similarity=0.000 Sum_probs=29.9
Q ss_pred cCCCCcEEEEecCCCCcc-----ccCCCccccccceeeeccccccccccc---chhhhcccccceecccccc
Q 037562 45 VMNNLVILCVHCCDHLIN-----LVPSSTSFQNLTNLVVSHCKRLKIVLT---SSIAKTLVRLRYMEIESCD 108 (670)
Q Consensus 45 ~~~~L~~L~i~~c~~l~~-----~~~~~~~~~~L~~L~i~~c~~l~~l~~---~~~~~~l~~L~~L~i~~c~ 108 (670)
..++|++|++++|..+.. +.......++|++|++++|. +.+-.. ...+...++|++|++++|.
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 456677777766633422 11111223566666666663 222100 1123344566666666553
No 287
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=85.98 E-value=0.11 Score=46.01 Aligned_cols=83 Identities=10% Similarity=-0.019 Sum_probs=51.9
Q ss_pred CccccEEEeccCcCcccccc----cccccCCCCcEEEEecCCCCcc-----ccCCCccccccceeeeccccccccccc--
Q 037562 21 GMEVKISEAYNCYRLENILI----EESSVMNNLVILCVHCCDHLIN-----LVPSSTSFQNLTNLVVSHCKRLKIVLT-- 89 (670)
Q Consensus 21 ~~~L~~L~i~~c~~l~~~~~----~~~~~~~~L~~L~i~~c~~l~~-----~~~~~~~~~~L~~L~i~~c~~l~~l~~-- 89 (670)
...|++|++++|..+..-.. ......++|++|++++|. +.. +.......++|++|++++|. +..-..
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~ 112 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILA 112 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHHH
Confidence 44899999999866654321 112456899999999986 422 11112234789999999883 332110
Q ss_pred -chhhhcccccceeccc
Q 037562 90 -SSIAKTLVRLRYMEIE 105 (670)
Q Consensus 90 -~~~~~~l~~L~~L~i~ 105 (670)
...+...++|++|+++
T Consensus 113 l~~~L~~n~~L~~L~L~ 129 (185)
T 1io0_A 113 LVEALQSNTSLIELRID 129 (185)
T ss_dssp HHHGGGGCSSCCEEECC
T ss_pred HHHHHHhCCCceEEEec
Confidence 1234556788888883
No 288
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=85.12 E-value=2.6 Score=39.49 Aligned_cols=134 Identities=15% Similarity=0.114 Sum_probs=88.0
Q ss_pred chhHHHHHHHHhhcCCchhhHHHHh--CCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhc--CChHHHH
Q 037562 466 VLTPALRTIRNIVKGDDFQTQCIIN--CGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDS--GLIGPIV 541 (670)
Q Consensus 466 v~~~a~~~L~~l~~~~~~~~~~l~~--~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~--~~i~~L~ 541 (670)
....|+..|..++..-....+ +++ ...+..|+ +.... .+.+++.|+.+++...+.+|.....+.+. .++..+.
T Consensus 44 ~le~aLD~L~ElSHDi~~G~K-I~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf 120 (315)
T 3qml_C 44 RLEDSFDRIMEFAHDYKHGYK-IITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIM 120 (315)
T ss_dssp HHHHHHHHHGGGTTSHHHHHH-HHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHhhhH-HHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHH
Confidence 345666777777654333333 332 22333333 22334 67899999999999999999988877753 3455554
Q ss_pred HHhhc-------CChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCC--ChHHHHHHHHHHHHHHHh
Q 037562 542 NLLQN-------TEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCA--DPKIVTVCLEGLENILKV 608 (670)
Q Consensus 542 ~ll~~-------~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~~l~~l~~~ 608 (670)
.-|.. ...-+++.-+.+|.-|+... .. | ...++..|.+++... ++.++.+++..+..++..
T Consensus 121 ~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~-~~----F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~~ 190 (315)
T 3qml_C 121 AALSNLNDSNHRSSNILIKRYLSILNELPVTS-ED----L-PIYSTVVLQNVYERNNKDKQLQIKVLELISKILKA 190 (315)
T ss_dssp HHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS-TT----C---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHhcCh-Hh----h-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHccc
Confidence 44432 23467778888888888852 11 1 244678888887766 899999999999998863
No 289
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=84.61 E-value=19 Score=33.20 Aligned_cols=138 Identities=16% Similarity=0.233 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHhhcC-CHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhh
Q 037562 508 SIKKEVSWIISNITCG-NREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDL 586 (670)
Q Consensus 508 ~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~l 586 (670)
+.+.....-+..++.. ++... .++++.++.+..+.+.++|+..+..+...+.. .++.... +++.|..+
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll-----~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~-k~~l~~~-----~l~~L~~L 98 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELA-----EEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV-KVELLPH-----VINVVSML 98 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGH-----HHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHHH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHhHH-----HHHHHHHHHhccCChHHHHHHHHHHHHHHHHH-HHHHHHH-----HHHHHHHH
Confidence 4666666666665543 33322 23566677766677899999999999888754 3333332 67888889
Q ss_pred ccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCC----ccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562 587 LLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGD----FNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYW 661 (670)
Q Consensus 587 l~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~ 661 (670)
++++++.|.+.++.+..+++...-...-.. ++ .......+. ..-+.+..+..+.+..++-.|.+.+++..
T Consensus 99 l~d~d~~V~K~~I~~~~~iY~~~l~~i~~~---~~~~~~~~~~W~~m~--~lK~~Il~~~~s~n~gvkl~~iKF~e~vI 172 (257)
T 3gs3_A 99 LRDNSAQVIKRVIQACGSIYKNGLQYLCSL---MEPGDSAEQAWNILS--LIKAQILDMIDNENDGIRTNAIKFLEGVV 172 (257)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHHTTS---SSCCHHHHHHHHHHH--HHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcchHHHHHHHHH--HHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence 999999999999999888876432222110 11 112233332 22445666678889999999999999863
No 290
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=83.88 E-value=12 Score=35.13 Aligned_cols=150 Identities=13% Similarity=0.102 Sum_probs=92.6
Q ss_pred hhHHHHHHhhccC------ChhHHHHHHHHHHHhccCChHHHHHHHH--cCCHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 037562 408 PALPVLAQLIRSN------DEEVLTDACWALSYLSDGTNDKVQAVIE--AGVYPRLVELLGHSSSSVLTPALRTIRNIVK 479 (670)
Q Consensus 408 ~~i~~L~~lL~~~------~~~v~~~al~~L~~l~~~~~~~~~~~~~--~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 479 (670)
.-+..+..+++++ +.+....++..|..++.. -..--.+.+ ...+..|+ +.....+.+++.|+++|+...+
T Consensus 22 ~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHD-i~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLR 99 (315)
T 3qml_C 22 SDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHD-YKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLR 99 (315)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTS-HHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhh-HHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHc
Confidence 3344455555554 445567777777777743 222223333 23444444 3344556799999999999999
Q ss_pred CCchhhHHHHh--CCChHHHHHhhcc----C--CchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcC--Ch
Q 037562 480 GDDFQTQCIIN--CGALPYFLDMLVH----N--HEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNT--EF 549 (670)
Q Consensus 480 ~~~~~~~~l~~--~~~~~~L~~~l~~----~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~ 549 (670)
++|.....+.+ ..++..+..-|.. . ....+++.-+.+|..+...+.. + ....+..|.+++... +.
T Consensus 100 NNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~~~d~ 174 (315)
T 3qml_C 100 NNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERNNKDK 174 (315)
T ss_dssp TCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHTTTCH
T ss_pred cCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccCCCCH
Confidence 99988776654 2444444443322 1 1335666667777777665322 1 244678888888766 88
Q ss_pred hHHHHHHHHHHHhcC
Q 037562 550 DTKKEAAWAISNATK 564 (670)
Q Consensus 550 ~v~~~a~~aL~~l~~ 564 (670)
.++..++..+..+..
T Consensus 175 ~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 175 QLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc
Confidence 999999988888763
No 291
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=83.05 E-value=6.7 Score=38.56 Aligned_cols=140 Identities=16% Similarity=0.148 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhhc-CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhc
Q 037562 509 IKKEVSWIISNITC-GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLL 587 (670)
Q Consensus 509 v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll 587 (670)
.+.....-+..++. .++. .-.++++.++.+-.+.+.++|+.++..|...+.. ..+.... +++.|..++
T Consensus 41 ~Kl~~L~q~~EL~l~~dps-----Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~~el~~~-----~l~~L~~LL 109 (386)
T 3o2t_A 41 SKITVLKQVQELIINKDPT-----LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-DIELLLK-----LIANLNMLL 109 (386)
T ss_dssp HHHHHHHHHHHHHHTTCGG-----GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHH-----HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHHHHH-----HHHHHHHHH
Confidence 44444555555433 2332 2246888899888888999999999999988764 3333322 677888889
Q ss_pred cCCChHHHHHHHHHHHHHHHhhhhhhcc-CCCCCCccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 037562 588 LCADPKIVTVCLEGLENILKVGVAEMNT-GTAVGDFNQYAQLVEEAEGLEKIENLQSHDDNGISEKAVEILETYW 661 (670)
Q Consensus 588 ~~~~~~v~~~a~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~l~~L~~~~~~~v~~~a~~~l~~~~ 661 (670)
+++++.|.+.++.+..+++...-...-. +............+. ...+.|..+..+.+..++-.|.+.+++..
T Consensus 110 ~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~--~lK~~Il~~~ds~n~GVrl~aiKFle~VI 182 (386)
T 3o2t_A 110 RDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVS--AMAGDIILLLDSDNDGIRTHAIKFVEGLI 182 (386)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH--HHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHH--HHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 9999999999998888876432111110 000000012233332 22345666678889999999999999863
No 292
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=82.59 E-value=2.4 Score=35.36 Aligned_cols=73 Identities=11% Similarity=-0.042 Sum_probs=60.5
Q ss_pred ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccC------CChHHHHHHHHHHHHHHHh
Q 037562 536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLC------ADPKIVTVCLEGLENILKV 608 (670)
Q Consensus 536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~a~~~l~~l~~~ 608 (670)
++..+..-+.+.++.++..|+..|-.+..++.+.+...+.....+..|+.++.. .++.|+..++..+......
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 345666777889999999999999999999888888888777788888888853 5778999999999887654
No 293
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=81.00 E-value=2.4 Score=36.05 Aligned_cols=73 Identities=7% Similarity=-0.032 Sum_probs=58.6
Q ss_pred ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccC-CChHHHHHHHHHHHHHHHh
Q 037562 536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLC-ADPKIVTVCLEGLENILKV 608 (670)
Q Consensus 536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~~l~~~ 608 (670)
++..+..-+.++++.++..|+..|-.+..++.+.+...+.....++.|+.++.. .++.|+..++..+......
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~ 126 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEE 126 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHH
Confidence 345566677888999999999999999998888887777766777778887764 6789999999988887654
No 294
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=78.12 E-value=51 Score=32.48 Aligned_cols=238 Identities=12% Similarity=0.037 Sum_probs=113.8
Q ss_pred hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHh
Q 037562 314 SENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFN 393 (670)
Q Consensus 314 ~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~ 393 (670)
+...+..++...+..|+.++.++|+.-|...-.+|..+-+.-...|..+.. ..-..+.+.+.......-....+.+++.
T Consensus 119 ~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgs 197 (403)
T 3fga_B 119 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGS 197 (403)
T ss_dssp HHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred hhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHH
Confidence 444445555567888999999999999999988888876544444443322 1123344444333222333345555555
Q ss_pred hhcCCCCC-ChhhhhhhHHHHHHhhccCCh-hHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHH
Q 037562 394 FCRGKPQP-PFNQVRPALPVLAQLIRSNDE-EVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPAL 471 (670)
Q Consensus 394 l~~~~~~~-~~~~~~~~i~~L~~lL~~~~~-~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~ 471 (670)
+..+...+ ......-....|+.+.+...- ..-.....|+......++.....++ ..+++.=-..+..-...-+
T Consensus 198 IinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~vi-----~~LLk~WP~tns~KevlFL 272 (403)
T 3fga_B 198 IINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVV-----MALLKYWPKTHSPKEVMFL 272 (403)
T ss_dssp HHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHHH-----HHHHHTCCSSCHHHHHHHH
T ss_pred HHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHHH-----HHHHHhCCCCCcHHHHHHH
Confidence 55444221 122222333444455444331 1222333344444433443333221 1122211112222222223
Q ss_pred HHHHHhhcCC-chhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHh---cCChHHHHHHhh--
Q 037562 472 RTIRNIVKGD-DFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVID---SGLIGPIVNLLQ-- 545 (670)
Q Consensus 472 ~~L~~l~~~~-~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~---~~~i~~L~~ll~-- 545 (670)
.-+..+...- +.....+. ..++..+...+.+. +..|.+.|.....| + ....++. ..++|.+...+.
T Consensus 273 ~Ele~iLe~~~~~~f~~i~-~~lf~~la~ci~S~-hfqVAErAL~~wnN-----e-~i~~li~~n~~~IlPii~p~L~~~ 344 (403)
T 3fga_B 273 NELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWNN-----E-YIMSLISDNAAKILPIMFPSLYRN 344 (403)
T ss_dssp HHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGGC-----H-HHHHHHHTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHCCC-CHHHHHHHHHHhcc-----H-HHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3344444322 22222222 23566777778888 77787776644321 2 2222221 124555555443
Q ss_pred --cC-ChhHHHHHHHHHHHhcCC
Q 037562 546 --NT-EFDTKKEAAWAISNATKF 565 (670)
Q Consensus 546 --~~-~~~v~~~a~~aL~~l~~~ 565 (670)
.. +..++..|..++.-+...
T Consensus 345 ~~~HWn~~v~~l~~~vlk~l~e~ 367 (403)
T 3fga_B 345 SKTHWNKTIHGLIYNALKLFMEM 367 (403)
T ss_dssp TSCCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHccCHHHHHHHHHHHHHHHHh
Confidence 21 567888888887776553
No 295
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=77.92 E-value=3.2 Score=34.62 Aligned_cols=73 Identities=11% Similarity=-0.054 Sum_probs=60.3
Q ss_pred ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccC------CChHHHHHHHHHHHHHHHh
Q 037562 536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLC------ADPKIVTVCLEGLENILKV 608 (670)
Q Consensus 536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~a~~~l~~l~~~ 608 (670)
++..+..-+.++++.++..|+..|-.+..++.+.+...+.....+..|+.++.. .++.|+..++..+......
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 345566677889999999999999999999888888888878888889988864 4778999999988887654
No 296
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=77.25 E-value=2 Score=40.21 Aligned_cols=91 Identities=18% Similarity=0.073 Sum_probs=53.6
Q ss_pred ccCCCCcEEEEecCCCCccc---cCCCccccccceeeecccccccccccchhhhcccccceeccccccccceeccccccc
Q 037562 44 SVMNNLVILCVHCCDHLINL---VPSSTSFQNLTNLVVSHCKRLKIVLTSSIAKTLVRLRYMEIESCDKITEIVLVDDVV 120 (670)
Q Consensus 44 ~~~~~L~~L~i~~c~~l~~~---~~~~~~~~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~~~~~~~~~ 120 (670)
..+++|+.|++++.. +..+ +.....+++|+.|++++. +++.+.....+..+ +|++|++.+.+--..++. ....
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~-~~~y 242 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGL-KLEELWLDGNSLCDTFRD-QSTY 242 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSS-HHHH
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcccC-CcceEEccCCcCccccCc-chhH
Confidence 468999999998764 4443 333457899999999865 44444111222333 899999988762222210 0000
Q ss_pred cccccccccccccccccc
Q 037562 121 AQDEVITFRELKELNLLQ 138 (670)
Q Consensus 121 ~~~~~~~~~~L~~L~l~~ 138 (670)
.......||+|+.|+=..
T Consensus 243 ~~~il~~~P~L~~LDg~~ 260 (267)
T 3rw6_A 243 ISAIRERFPKLLRLDGHE 260 (267)
T ss_dssp HHHHHHHCTTCCEESSCB
T ss_pred HHHHHHHCcccCeECCcC
Confidence 111235689998886543
No 297
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=77.13 E-value=5.2 Score=39.97 Aligned_cols=10 Identities=50% Similarity=0.601 Sum_probs=5.9
Q ss_pred CCCCccceee
Q 037562 177 STPNLHKVQL 186 (670)
Q Consensus 177 ~~~~L~~l~i 186 (670)
.+++|+++++
T Consensus 364 ~C~~L~~i~l 373 (394)
T 4fs7_A 364 GCINLKKVEL 373 (394)
T ss_dssp TCTTCCEEEE
T ss_pred CCCCCCEEEE
Confidence 3566666655
No 298
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=75.45 E-value=3.6 Score=35.03 Aligned_cols=74 Identities=15% Similarity=0.053 Sum_probs=57.1
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIAS 311 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 311 (670)
+++..+.+.+++.++.++..|+..|-.+..........++....++..++.++.....+.|+..+...+...+.
T Consensus 52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 55778888899999999999999998887765344445666667888888888763448999998888777664
No 299
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=74.69 E-value=2.6 Score=34.78 Aligned_cols=73 Identities=16% Similarity=0.100 Sum_probs=55.4
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIAS 311 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 311 (670)
+++..+.+.+++.++.++..|+..|-.+..........++....++..++.++...+ +.|+..+...+...+.
T Consensus 42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~-~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGH-PKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHH
Confidence 557788888999999999999998888877643333445555667778888887666 8999998888877654
No 300
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=74.54 E-value=21 Score=30.53 Aligned_cols=70 Identities=17% Similarity=0.169 Sum_probs=52.2
Q ss_pred CcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhc------CCCHHHHHH
Q 037562 579 CVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQS------HDDNGISEK 652 (670)
Q Consensus 579 ~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~------~~~~~v~~~ 652 (670)
++..|..-+.+.++.++..|+..|..+++++... |...+.....++.|..+.. ..+.+|+++
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~------------Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~k 118 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR------------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTK 118 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH------------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH------------HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHH
Confidence 4566777778899999999999999999886542 4445555556677777654 346889999
Q ss_pred HHHHHHHh
Q 037562 653 AVEILETY 660 (670)
Q Consensus 653 a~~~l~~~ 660 (670)
+..+++..
T Consensus 119 il~li~~W 126 (171)
T 1juq_A 119 VIELLYSW 126 (171)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98888764
No 301
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=74.04 E-value=16 Score=41.21 Aligned_cols=187 Identities=15% Similarity=0.098 Sum_probs=114.7
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc---cCChhHHHHHHHHHHh--hhcCCC
Q 037562 325 AVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE---NANLSMLRTATWTLFN--FCRGKP 399 (670)
Q Consensus 325 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~---~~~~~~~~~a~~~L~~--l~~~~~ 399 (670)
++.-|+++--+...+||..|-.+|......-+..+..+ ++.+++.|.. +.+.+-.+-|+++|.. +... -
T Consensus 134 ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~i-----ip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~-~ 207 (997)
T 1vsy_5 134 LLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGSYGVV-----INKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRK-L 207 (997)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTHHHHH-----HHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHH-G
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccHHHHH-----HHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhH-H
Confidence 35677777778899999999999999887766666554 7888888865 5566666777776652 1111 1
Q ss_pred CCChhhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCC------------------------hHHHHHH---------
Q 037562 400 QPPFNQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGT------------------------NDKVQAV--------- 446 (670)
Q Consensus 400 ~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~------------------------~~~~~~~--------- 446 (670)
.........+++.+++....+.++++..+-.+...+.... +......
T Consensus 208 ~~d~~~~~~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~~~i~~~d~~i~~~~~~~~~~~~~~r~ 287 (997)
T 1vsy_5 208 MTDYKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKLAKKKKRE 287 (997)
T ss_dssp GGCHHHHHHHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGTGGGCCSCSSTTSHHHHHHHHTTHHHH
T ss_pred hcChHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 2234444667777777776666666655554433332210 0000000
Q ss_pred -HH---cCCHHHHHHhc-CCCC--ccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHH
Q 037562 447 -IE---AGVYPRLVELL-GHSS--SSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISN 519 (670)
Q Consensus 447 -~~---~~~i~~L~~lL-~~~~--~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~ 519 (670)
.. .++...++... .+.. ++....++..+.++....+. .....++..+++.+.++ .+.+|..|..++..
T Consensus 288 ~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~----~~~~~~v~~~~~~l~~d-hp~~R~~a~~~l~~ 362 (997)
T 1vsy_5 288 YYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLES----KPDKRAVFSIISQISTK-HPEIIHLVVKSLLS 362 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSC----CCCHHHHHHHHGGGGGC-CHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCC----CCCHHHHHHHHHhhcCC-CHHHHHHHHHHHHH
Confidence 11 12333344554 3345 88888888886666543221 11224567788888888 99999999988866
Q ss_pred hhc
Q 037562 520 ITC 522 (670)
Q Consensus 520 l~~ 522 (670)
+..
T Consensus 363 il~ 365 (997)
T 1vsy_5 363 TCN 365 (997)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 302
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=73.21 E-value=4.4 Score=33.80 Aligned_cols=73 Identities=11% Similarity=-0.004 Sum_probs=58.5
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcC------CCCHHHHHHHHHHHHHHcC
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMR------QDYPQLQFKAAWALTNIAS 311 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~------~~~~~v~~~a~~~L~~l~~ 311 (670)
+++..+.+.+++.++.++..|+..|-.+..........++....++..|+.++.. .+ +.|+..++..+...+.
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~-~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWAT-GKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCC-HHHHHHHHHHHHHHHH
Confidence 5577888889999999999999999888876544455666677889999998864 24 7999999888887765
No 303
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=72.63 E-value=16 Score=36.21 Aligned_cols=11 Identities=9% Similarity=0.011 Sum_probs=5.8
Q ss_pred CCCCccEEeEe
Q 037562 153 TFPSLEILVVN 163 (670)
Q Consensus 153 ~~~~L~~L~i~ 163 (670)
.|++|+.+.+.
T Consensus 364 ~C~~L~~i~lp 374 (394)
T 4fs7_A 364 GCINLKKVELP 374 (394)
T ss_dssp TCTTCCEEEEE
T ss_pred CCCCCCEEEEC
Confidence 44555555553
No 304
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=72.50 E-value=59 Score=32.61 Aligned_cols=226 Identities=12% Similarity=0.082 Sum_probs=122.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC-----h
Q 037562 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGT-----S 314 (670)
Q Consensus 240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~-----~ 314 (670)
+..|+..+.++|+..+...-..|..+-..- ...+..+...+-..+.+++.......-....+.+++.+..+. +
T Consensus 164 i~~Ll~lfdSeDpRERd~LktiLhrIY~Kf--~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKe 241 (449)
T 2npp_B 164 VLQLLELFDSEDPRERDFLKTTLHRIYGKF--LGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKE 241 (449)
T ss_dssp HHHHHHTTTSSTHHHHHHHHHHHHHHHHSC--TTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcH
Confidence 788999999999999988888888875542 233333333344556666644332334456777888877653 3
Q ss_pred hhHHHHHhCCChHHHHHhhCCCCHH-HHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHh
Q 037562 315 ENTKVVIDHGAVPIFVKLLASPSVD-VRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFN 393 (670)
Q Consensus 315 ~~~~~i~~~~~i~~L~~lL~~~~~~-v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~ 393 (670)
+.+..+ ...|+.+.+...-. ...+-..++..+...++.....+ +..+++.- ..++..-...-+.-+..
T Consensus 242 ehk~fl-----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~W-P~tns~KevlFL~elee 310 (449)
T 2npp_B 242 EHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYW-PKTHSPKEVMFLNELEE 310 (449)
T ss_dssp HHHHHH-----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTC-CSSCHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHH-----HHHHHHhC-CCCCchHHHHHHHHHHH
Confidence 333332 24455555543322 22344455555555555543322 33333333 22222222223333444
Q ss_pred hhcCCCCCCh-hhhhhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHH--cCCHHHHHHhcCC-----CCcc
Q 037562 394 FCRGKPQPPF-NQVRPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIE--AGVYPRLVELLGH-----SSSS 465 (670)
Q Consensus 394 l~~~~~~~~~-~~~~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~--~~~i~~L~~lL~~-----~~~~ 465 (670)
+...-+...+ .....++..+...+.+.+..|.+.|+....| +.....+.+ ..+++.+...|.. -+..
T Consensus 311 ile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N-----~~i~~li~~n~~~IlPii~p~L~~~s~~HWn~~ 385 (449)
T 2npp_B 311 ILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNN-----EYIMSLISDNAAKILPIMFPSLYRNSKTHWNKT 385 (449)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGC-----HHHHHHHHTTHHHHHHHHHHHHTSCTTCCSSTT
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCC-----HHHHHHHHhchhhhHHhhHHHHHHHHHHhcCHH
Confidence 4433222222 2335677778888889999998888754422 212221111 1244556555532 3567
Q ss_pred chhHHHHHHHHhhcCCch
Q 037562 466 VLTPALRTIRNIVKGDDF 483 (670)
Q Consensus 466 v~~~a~~~L~~l~~~~~~ 483 (670)
++..|..++.-+...++.
T Consensus 386 V~~la~~vlk~l~e~d~~ 403 (449)
T 2npp_B 386 IHGLIYNALKLFMEMNQK 403 (449)
T ss_dssp HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHCHH
Confidence 888898888877765554
No 305
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=71.73 E-value=5.3 Score=33.28 Aligned_cols=73 Identities=11% Similarity=0.004 Sum_probs=58.4
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcC------CCCHHHHHHHHHHHHHHcC
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMR------QDYPQLQFKAAWALTNIAS 311 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~------~~~~~v~~~a~~~L~~l~~ 311 (670)
+++..+.+.+++.++.++..|+..|-.+..........++....++..|++++.. .+ +.|+..++..+...+.
T Consensus 48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~-~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTS-EKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCC-HHHHHHHHHHHHHHHH
Confidence 4577888899999999999999999888776544445666677788899998864 34 7899999988888765
No 306
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=71.58 E-value=87 Score=31.40 Aligned_cols=238 Identities=12% Similarity=0.041 Sum_probs=121.2
Q ss_pred hhhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHh
Q 037562 314 SENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFN 393 (670)
Q Consensus 314 ~~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~ 393 (670)
+...+..++...+..|+.++.++|+.-|...-.+|..+-..-...|..+... .-..+.+.+.......-....+.+++.
T Consensus 152 ~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgS 230 (449)
T 2npp_B 152 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGS 230 (449)
T ss_dssp STTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHH
T ss_pred hhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHH
Confidence 3444555666788899999999999999999998888765444444444331 223445555443333444566667777
Q ss_pred hhcCCCCC-ChhhhhhhHHHHHHhhccCChh-HHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHH
Q 037562 394 FCRGKPQP-PFNQVRPALPVLAQLIRSNDEE-VLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPAL 471 (670)
Q Consensus 394 l~~~~~~~-~~~~~~~~i~~L~~lL~~~~~~-v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~ 471 (670)
+..+.... ......-....|+.+.+...-. .-.....|+......++.....++ ..|++.=-..+..-...-+
T Consensus 231 IinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi-----~~LLk~WP~tns~KevlFL 305 (449)
T 2npp_B 231 IINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVV-----MALLKYWPKTHSPKEVMFL 305 (449)
T ss_dssp HHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHHH-----HHHHHTCCSSCHHHHHHHH
T ss_pred HHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHHH-----HHHHHhCCCCCchHHHHHH
Confidence 66664222 2222233344555555544321 222233444444433443333222 2222221112222222233
Q ss_pred HHHHHhhcCC-chhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHh---cCChHHHHHHhhcC
Q 037562 472 RTIRNIVKGD-DFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVID---SGLIGPIVNLLQNT 547 (670)
Q Consensus 472 ~~L~~l~~~~-~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~---~~~i~~L~~ll~~~ 547 (670)
.-|..+.... +.....++ ..++..+...+.+. +..|.+.|.....| +... .++. ..++|.+...+...
T Consensus 306 ~eleeile~~~~~ef~~i~-~~lF~~la~ci~S~-hfqVAErAL~~w~N-----~~i~-~li~~n~~~IlPii~p~L~~~ 377 (449)
T 2npp_B 306 NELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWNN-----EYIM-SLISDNAAKILPIMFPSLYRN 377 (449)
T ss_dssp HHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGGC-----HHHH-HHHHTTHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHCC-----HHHH-HHHHhchhhhHHhhHHHHHHH
Confidence 3344444322 22222222 23567777888887 88887776644322 2211 2221 12456666655321
Q ss_pred -----ChhHHHHHHHHHHHhcCC
Q 037562 548 -----EFDTKKEAAWAISNATKF 565 (670)
Q Consensus 548 -----~~~v~~~a~~aL~~l~~~ 565 (670)
+..++..|..++.-+...
T Consensus 378 s~~HWn~~V~~la~~vlk~l~e~ 400 (449)
T 2npp_B 378 SKTHWNKTIHGLIYNALKLFMEM 400 (449)
T ss_dssp TTCCSSTTHHHHHHHHHHHHHTT
T ss_pred HHHhcCHHHHHHHHHHHHHHHHH
Confidence 457888888777766654
No 307
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=71.20 E-value=4.2 Score=34.90 Aligned_cols=73 Identities=11% Similarity=-0.005 Sum_probs=59.4
Q ss_pred ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccC------CChHHHHHHHHHHHHHHHh
Q 037562 536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLC------ADPKIVTVCLEGLENILKV 608 (670)
Q Consensus 536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~v~~~a~~~l~~l~~~ 608 (670)
++..|..-+.++++.++..|+..|-.+..++.+.+...+.....++.|+.++.. .++.|+..++..+......
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 345667777889999999999999999998777777777777788888888852 4678999999999887654
No 308
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=68.41 E-value=5.6 Score=36.01 Aligned_cols=74 Identities=11% Similarity=0.023 Sum_probs=58.3
Q ss_pred ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhcc-CCChHHHHHHHHHHHHHHHhh
Q 037562 536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLL-CADPKIVTVCLEGLENILKVG 609 (670)
Q Consensus 536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~ 609 (670)
++..|..-+.+.++.++..|+..|..+..++.+.....+.....++.|..+++ ..++.|+..++..+.......
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 120 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF 120 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 34556677788999999999999999999877777777766667777777774 357789999999998876543
No 309
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=65.46 E-value=8.2 Score=38.47 Aligned_cols=8 Identities=13% Similarity=0.293 Sum_probs=3.6
Q ss_pred cccceeee
Q 037562 71 QNLTNLVV 78 (670)
Q Consensus 71 ~~L~~L~i 78 (670)
.+|+.+.|
T Consensus 311 ~~L~~i~l 318 (394)
T 4gt6_A 311 ISLKSIDI 318 (394)
T ss_dssp TTCCEEEC
T ss_pred CCcCEEEe
Confidence 34444444
No 310
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=65.33 E-value=31 Score=39.01 Aligned_cols=221 Identities=12% Similarity=0.099 Sum_probs=117.8
Q ss_pred hHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhccCChhHHHHHHHHHH-----HhccCChHH
Q 037562 368 LIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRSNDEEVLTDACWALS-----YLSDGTNDK 442 (670)
Q Consensus 368 i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~al~~L~-----~l~~~~~~~ 442 (670)
+.-|+++- -+.-.++++.|-.+|......-+.........++..|-..+...+.+-..-|+.+|. ..+..+...
T Consensus 135 l~dL~~Ls-~S~Y~~VR~~AQ~~L~~~~~~~~gs~~~iip~ll~~L~~~~~~~~~~~iKGaLy~L~~k~~~~~~~~d~~~ 213 (997)
T 1vsy_5 135 LVDIIQLA-TSLYPDIYKPAQGTLVHCMKQLVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTDYKD 213 (997)
T ss_dssp HHHHHHHH-TSSCHHHHHHHHHHHHHHHTTBTTHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHTTSHHHHHHGGGCHHH
T ss_pred HHHHHHHh-cCchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHhhhhhhhHHhcChHH
Confidence 44555544 566779999999999988876544433333344444433333445555555665543 222222222
Q ss_pred HHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCchhhH-HHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhh
Q 037562 443 VQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDDFQTQ-CIINCGALPYFLDMLVHNHEESIKKEVSWIISNIT 521 (670)
Q Consensus 443 ~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~-~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~ 521 (670)
.. .+++.++.....++++++..+-.+...+......... .+++...+ .-+..+ +..+. .+........
T Consensus 214 ~~-----~~~~ali~~~~~dKpsI~~l~~~l~~~i~~~~~~p~~~~~~~~~~~----~~i~~~-d~~i~-~~~~~~~~~~ 282 (997)
T 1vsy_5 214 IG-----RLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAF----LPLAPP-DGTIN-LQVEAVKLAK 282 (997)
T ss_dssp HH-----HHHHHHHHTCSCSSSSTTTHHHHHHHHHHTSCCCCCSCCCCCGGGT----GGGCCS-CSSTT-SHHHHHHHHT
T ss_pred HH-----HHHHHHHHhCcCCCHHHHHHHHHHHHHHHhcccCchHHHHHHHHHH----hccCCC-cHHHH-HHHHHHHHHH
Confidence 22 4667788887778888888777666655543211000 01111111 222222 22221 1222222221
Q ss_pred cCCHHHHHHHHh--cCChHHHHHHhh-cCC--hhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHH
Q 037562 522 CGNREQIQAVID--SGLIGPIVNLLQ-NTE--FDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVT 596 (670)
Q Consensus 522 ~~~~~~~~~l~~--~~~i~~L~~ll~-~~~--~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~ 596 (670)
...+....+ .++...+++..+ +.. ......++..+.++...-+... ...++..+++.+.+++|.++.
T Consensus 283 ---~~~r~~~~~~~~~L~~~l~~~~~~~~h~~Wk~~~~~~~~l~~l~~r~d~~~-----~~~~v~~~~~~l~~dhp~~R~ 354 (997)
T 1vsy_5 283 ---KKKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESKP-----DKRAVFSIISQISTKHPEIIH 354 (997)
T ss_dssp ---THHHHHHHHHHHHHHHHHHHHHHSSTTCCSCHHHHHHHHHHHHTCCSSCCC-----CHHHHHHHHGGGGGCCHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCCCCC-----CHHHHHHHHHhhcCCCHHHHH
Confidence 111111111 234555666663 345 7888888888666664321110 111466788888999999999
Q ss_pred HHHHHHHHHHHh
Q 037562 597 VCLEGLENILKV 608 (670)
Q Consensus 597 ~a~~~l~~l~~~ 608 (670)
.|+.++..++..
T Consensus 355 ~a~~~l~~il~~ 366 (997)
T 1vsy_5 355 LVVKSLLSTCNK 366 (997)
T ss_dssp HHHHHHTHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888765
No 311
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=64.23 E-value=29 Score=28.01 Aligned_cols=95 Identities=17% Similarity=0.150 Sum_probs=60.9
Q ss_pred ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHHhhhhhhcc
Q 037562 536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILKVGVAEMNT 615 (670)
Q Consensus 536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~~ 615 (670)
+++.|+..+++.+..+...++..|...-. . .++.+.+.+++.|..=+ .+++..++..-...
T Consensus 32 ~lp~LL~WLQD~NWPvA~~i~~~L~~~~~----~---------l~p~I~~vl~s~D~~W~---ywil~~lv~~~~~~--- 92 (134)
T 3ut4_A 32 IIFDLLKWLQDYNWPIAKDILPVVVLHQS----I---------AMPHILTILQGNDIMWK---YWVIKLMIPYLIYP--- 92 (134)
T ss_dssp HHHHHHGGGSCTTSTTHHHHHHHHHHTHH----H---------HHHHHHHHHHSSCHHHH---HHHHHHHGGGCCHH---
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHccH----h---------hHHHHHHHHHcCChHHH---HHHHHHHHHcCCHH---
Confidence 57789999999999999998888886422 2 45566667777776533 44444444221111
Q ss_pred CCCCCCccHHHHHHHHhchHHHHHHhhcC-----CCHHHHHHHHHHHHHhcCC
Q 037562 616 GTAVGDFNQYAQLVEEAEGLEKIENLQSH-----DDNGISEKAVEILETYWSS 663 (670)
Q Consensus 616 ~~~~~~~~~~~~~~~~~g~~~~l~~L~~~-----~~~~v~~~a~~~l~~~~~~ 663 (670)
....+ ...|.++... ...++.+.|.++|++||++
T Consensus 93 ---------~~~~l-----~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~~~~ 131 (134)
T 3ut4_A 93 ---------NKQLV-----KSELERLSSLEIINEDIREIVNLSKDYLHFYYPD 131 (134)
T ss_dssp ---------HHHHH-----HHHHHHHHTCCCSSGGGHHHHHHHHHHHHHHC--
T ss_pred ---------HHHHH-----HHHHHHHHhCCCcchHHHHHHHHHHHHHHHHccc
Confidence 11222 3446666544 4677999999999999974
No 312
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=63.98 E-value=4.6 Score=36.55 Aligned_cols=74 Identities=15% Similarity=0.122 Sum_probs=55.9
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIAS 311 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 311 (670)
+++..|.+.+++.++.++..|+..|-.+..+.......++....++..|..+++....+.|+..++..+...+.
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 55788889999999999999999998887664333445555666777787777654447899988888877664
No 313
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=60.91 E-value=23 Score=35.15 Aligned_cols=34 Identities=12% Similarity=0.148 Sum_probs=19.6
Q ss_pred cCCCCccEEeEecCCCccccccC-CcCCCCccceeee
Q 037562 152 FTFPSLEILVVNYCPNMKIFSGG-ELSTPNLHKVQLS 187 (670)
Q Consensus 152 ~~~~~L~~L~i~~C~~l~~~p~~-~~~~~~L~~l~i~ 187 (670)
..|++|+.+.|- .+++.++.+ ...+++|+.+++.
T Consensus 331 ~~C~~L~~i~ip--~sv~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 331 AGCEQLERIAIP--SSVTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp TTCTTCCEEEEC--TTCCBCCGGGGTTCTTCCEEEES
T ss_pred hCCCCCCEEEEC--cccCEEhHhHhhCCCCCCEEEEC
Confidence 345667777663 235555443 2346778877764
No 314
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=57.52 E-value=6.7 Score=35.32 Aligned_cols=74 Identities=14% Similarity=0.081 Sum_probs=54.2
Q ss_pred ccHHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcC
Q 037562 238 EILPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIAS 311 (670)
Q Consensus 238 ~~i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~ 311 (670)
+++..|.+.+++.++.++..|+..|-.+..........++....++..|+.++.+.....|+..++..+...+.
T Consensus 42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 55778888899999999999999998887654233334555566777888877654337888888877776654
No 315
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=56.86 E-value=18 Score=30.33 Aligned_cols=73 Identities=12% Similarity=0.091 Sum_probs=55.8
Q ss_pred ChHHHHHHhh-cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHH-HHhhccC---CChHHHHHHHHHHHHHHHh
Q 037562 536 LIGPIVNLLQ-NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKP-LCDLLLC---ADPKIVTVCLEGLENILKV 608 (670)
Q Consensus 536 ~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~-L~~ll~~---~~~~v~~~a~~~l~~l~~~ 608 (670)
++..+..-+. +.++.++..|+..|-.+..++.+.....+.....++. |+.++.. .+..|+..++..+......
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~ 131 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADA 131 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 3445666676 5789999999999999999888888777777777776 7777732 3458999999988887654
No 316
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=54.61 E-value=3.1e+02 Score=31.87 Aligned_cols=171 Identities=12% Similarity=0.067 Sum_probs=89.5
Q ss_pred ChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhc-CCCCccchhHHHHHHHHhhcCCchh---hHHH------Hh
Q 037562 421 DEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELL-GHSSSSVLTPALRTIRNIVKGDDFQ---TQCI------IN 490 (670)
Q Consensus 421 ~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~---~~~l------~~ 490 (670)
...+.++.+..+.++....+ ..+++.++-++ -+.+...+..|-.++.+-+....-. .... +-
T Consensus 323 ~k~i~eAwlK~I~~~~~~~~--------hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL 394 (1323)
T 3s4w_B 323 EKTISEAWFKAIERIESAAE--------HKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVL 394 (1323)
T ss_dssp CHHHHHHHHHHHHHGGGSTT--------CCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhCCCcccc--------cchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHH
Confidence 56677777777777654322 13344333332 2223334555555555554322111 1101 11
Q ss_pred CCChHHHH----HhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCC
Q 037562 491 CGALPYFL----DMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFG 566 (670)
Q Consensus 491 ~~~~~~L~----~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 566 (670)
...++.++ .++.+. ++.++..+...-..+-...+.. .+..++..|+.-.-+++..-...|..+|..++..
T Consensus 395 ~~~f~siL~La~~Ll~S~-~~~v~~Fg~~lY~~lF~~fd~~----~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~- 468 (1323)
T 3s4w_B 395 KDICPSILLLAQTLFHSQ-DQRIILFGSLLYKYAFKFFDTY----CQQEVVGALVTHVCSGTEAEVDTALDVLLELIVL- 468 (1323)
T ss_dssp TTSHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHHSSCHH----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHhccch----hHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhc-
Confidence 23444444 345566 8888888877766665543322 2334556677766666655566688888888865
Q ss_pred CHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHH
Q 037562 567 THEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILK 607 (670)
Q Consensus 567 ~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~ 607 (670)
.+........ .+..+.+.+++-+..=...+...+..+.-
T Consensus 469 ~~~~l~~~a~--~l~giLD~l~~l~~~QiRklf~iL~~laf 507 (1323)
T 3s4w_B 469 NASAMRLNAA--FVKGILDYLENMSPQQIRKIFCILSTLAF 507 (1323)
T ss_dssp CHHHHHHTHH--HHHGGGGGGGGCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHhHHHH--HHHHHHHhhcCCCHHHHHHHHHHHHHHHc
Confidence 3443332211 24455566665555444455777776654
No 317
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=53.96 E-value=20 Score=29.35 Aligned_cols=73 Identities=19% Similarity=0.132 Sum_probs=51.9
Q ss_pred ChHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCC-cHHHHhhccCCC--------hHHHHHHHHHHHHHH
Q 037562 536 LIGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGC-VKPLCDLLLCAD--------PKIVTVCLEGLENIL 606 (670)
Q Consensus 536 ~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~-i~~L~~ll~~~~--------~~v~~~a~~~l~~l~ 606 (670)
+++.|..-|.+.++.++..|+..|..++.+|++.+...+.++-. |..+.+.--.++ ..||..|-.++.-|+
T Consensus 50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 56778888888899999999999999999999888888766421 222222211112 368888888887766
Q ss_pred Hh
Q 037562 607 KV 608 (670)
Q Consensus 607 ~~ 608 (670)
..
T Consensus 130 d~ 131 (140)
T 1vdy_A 130 SE 131 (140)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 318
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=53.87 E-value=11 Score=37.15 Aligned_cols=10 Identities=20% Similarity=0.212 Sum_probs=5.4
Q ss_pred cCCCCcEEEE
Q 037562 45 VMNNLVILCV 54 (670)
Q Consensus 45 ~~~~L~~L~i 54 (670)
.+.+|+.+.+
T Consensus 238 ~~~~L~~i~l 247 (379)
T 4h09_A 238 GMKALDEIAI 247 (379)
T ss_dssp TCSSCCEEEE
T ss_pred CCccceEEEc
Confidence 4455555555
No 319
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=53.00 E-value=19 Score=32.29 Aligned_cols=73 Identities=7% Similarity=-0.007 Sum_probs=56.0
Q ss_pred hHHHHHHhhcCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhcc-CCChHHHHHHHHHHHHHHHhh
Q 037562 537 IGPIVNLLQNTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLL-CADPKIVTVCLEGLENILKVG 609 (670)
Q Consensus 537 i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~v~~~a~~~l~~l~~~~ 609 (670)
+..+..-+.+.++.++..|+..|..+..++.+.....+.....++.|..++. ..++.|+..++..+.......
T Consensus 44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 117 (220)
T 1dvp_A 44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAF 117 (220)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Confidence 4455666778899999999999999998876666666666667777777774 456889999999988877543
No 320
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=52.97 E-value=87 Score=30.71 Aligned_cols=194 Identities=12% Similarity=0.042 Sum_probs=94.8
Q ss_pred hhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhh
Q 037562 315 ENTKVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNF 394 (670)
Q Consensus 315 ~~~~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l 394 (670)
...+..++...+..|+.++.++|+.-|.....+|..+-..-...|..+.. .+-..+.+.+.......-....+.+++.+
T Consensus 165 ~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fiye~e~~~GIaeLLeilgsI 243 (392)
T 2jak_A 165 NIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSI 243 (392)
T ss_dssp HHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHTSSCCCSCHHHHHHHHHHH
T ss_pred hhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCCCHHHHHHHHHHH
Confidence 33445556677889999999999999999999888776544444444432 12344555654444444445666666666
Q ss_pred hcCCCCC-ChhhhhhhHHHHHHhhccCCh-hHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHH
Q 037562 395 CRGKPQP-PFNQVRPALPVLAQLIRSNDE-EVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALR 472 (670)
Q Consensus 395 ~~~~~~~-~~~~~~~~i~~L~~lL~~~~~-~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~ 472 (670)
..+.... ......-....++.+.+...- ..-.....|+......++.....++ ..+++.=-..+..-...-+.
T Consensus 244 Ingfa~PLKeehk~Fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~vi-----~~LLk~WP~tns~KevlFL~ 318 (392)
T 2jak_A 244 INGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVV-----MALLKYWPKTHSPKEVMFLN 318 (392)
T ss_dssp HHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHHH-----HHHHHSSCSSCCTTHHHHHH
T ss_pred HhccCCCCcHHHHHHHHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHHH-----HHHHHhCCCCCchHHHHHHH
Confidence 6654222 222222234444555543321 1122223344333333333333222 22222211122222222333
Q ss_pred HHHHhhcCCc-hhhHHHHhCCChHHHHHhhccCCchhHHHHHHHH
Q 037562 473 TIRNIVKGDD-FQTQCIINCGALPYFLDMLVHNHEESIKKEVSWI 516 (670)
Q Consensus 473 ~L~~l~~~~~-~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~ 516 (670)
-+..+....+ .....+. ..++..+...+.+. +..|.+.|...
T Consensus 319 eleeiLe~~~~~~f~~i~-~~lF~~la~ci~S~-hfqVAErAL~~ 361 (392)
T 2jak_A 319 ELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYY 361 (392)
T ss_dssp HHHHHHHTCCHHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHGG
T ss_pred HHHHHHHhCCHHHHHHHH-HHHHHHHHHHHcCC-cHHHHHHHHHH
Confidence 3444433222 2222121 23556666777776 77776665433
No 321
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=51.73 E-value=1.3e+02 Score=34.96 Aligned_cols=171 Identities=11% Similarity=0.070 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChh----------hh
Q 037562 337 SVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFN----------QV 406 (670)
Q Consensus 337 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~----------~~ 406 (670)
+..+.+.-+..+.++..... ...+..++=++..+.+...++.+-.++.+........... +.
T Consensus 323 ~k~i~eAwlK~I~~~~~~~~--------hk~~Dl~vLlii~s~n~~~rk~aE~ilrkkI~~G~it~~ll~~~f~~h~~vL 394 (1323)
T 3s4w_B 323 EKTISEAWFKAIERIESAAE--------HKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVL 394 (1323)
T ss_dssp CHHHHHHHHHHHHHGGGSTT--------CCTHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHhCCCcccc--------cchhHHHHHHHHHcCCchhHHHHHHHHHHHHHcCCchHHHHHHHHHhhHHHH
Confidence 45555555566666542211 1233333322223334455666667777666554222111 11
Q ss_pred hhhHHHHH----HhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhcCCc
Q 037562 407 RPALPVLA----QLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVKGDD 482 (670)
Q Consensus 407 ~~~i~~L~----~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 482 (670)
...++.++ .++.+.++.++..+......+-...+.. ....++..|+..+.+++..-...|+.+|..++..++
T Consensus 395 ~~~f~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~fd~~----~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~ 470 (1323)
T 3s4w_B 395 KDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTY----CQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNA 470 (1323)
T ss_dssp TTSHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSSCHH----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccch----hHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCH
Confidence 23333333 5566788888888777666554433332 222455667766666666666679999999987655
Q ss_pred hhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc
Q 037562 483 FQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITC 522 (670)
Q Consensus 483 ~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 522 (670)
....... -.+..+++.+.+- +..--+....+++.++.
T Consensus 471 ~~l~~~a--~~l~giLD~l~~l-~~~QiRklf~iL~~laf 507 (1323)
T 3s4w_B 471 SAMRLNA--AFVKGILDYLENM-SPQQIRKIFCILSTLAF 507 (1323)
T ss_dssp HHHHHTH--HHHHGGGGGGGGC-CHHHHHHHHHHHHHHHH
T ss_pred HHHhHHH--HHHHHHHHhhcCC-CHHHHHHHHHHHHHHHc
Confidence 4333211 1234444555554 33333345777777765
No 322
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=50.76 E-value=1.9e+02 Score=28.41 Aligned_cols=231 Identities=8% Similarity=0.038 Sum_probs=118.0
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCC-CccchhHHHHHHHHhhcCCc---
Q 037562 407 RPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHS-SSSVLTPALRTIRNIVKGDD--- 482 (670)
Q Consensus 407 ~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~--- 482 (670)
...+-.|+.+++++|+.-|...-.++..+-.........+. ..+-..+..++... .-.-....+.+++.+..+..
T Consensus 128 ~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Ir-k~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PL 206 (403)
T 3fga_B 128 QKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIR-KQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPL 206 (403)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCc
Confidence 45677789999999999999988888887644443333222 12223344444332 22334566777777765442
Q ss_pred --hhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHH
Q 037562 483 --FQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAIS 560 (670)
Q Consensus 483 --~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 560 (670)
+.... ....|+.+-+...-......-+.++..+...++.....+ +..++..--..++.=...-+.-+.
T Consensus 207 keehk~f-----l~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~Ele 276 (403)
T 3fga_B 207 KEEHKIF-----LLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNELE 276 (403)
T ss_dssp CHHHHHH-----HHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHHHHHHHHH
T ss_pred hHHHHHH-----HHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCcHHHHHHHHHHH
Confidence 11111 122333333333222233344455555555444433222 122222222233322223333344
Q ss_pred HhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHH--HHhhhhhhccCCCCCCccHHHHHHHHhchHHHH
Q 037562 561 NATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENI--LKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKI 638 (670)
Q Consensus 561 ~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l 638 (670)
.+....++.....+.. .....+...+.+++..|.+.|+....+= +..-.. +.......+ +..|
T Consensus 277 ~iLe~~~~~~f~~i~~-~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~---------n~~~IlPii-----~p~L 341 (403)
T 3fga_B 277 EILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISD---------NAAKILPIM-----FPSL 341 (403)
T ss_dssp HHHTTCCHHHHHHHHH-HHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHT---------THHHHHHHH-----HHHH
T ss_pred HHHHhCCHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHH---------hHHHHHHHH-----HHHH
Confidence 4555445554444332 2566777888899999988887654221 111000 011122222 4555
Q ss_pred HH-hhcCCCHHHHHHHHHHHHHhcCC
Q 037562 639 EN-LQSHDDNGISEKAVEILETYWSS 663 (670)
Q Consensus 639 ~~-L~~~~~~~v~~~a~~~l~~~~~~ 663 (670)
.+ ..+|=++.|+..+..++..+-+-
T Consensus 342 ~~~~~~HWn~~v~~l~~~vlk~l~e~ 367 (403)
T 3fga_B 342 YRNSKTHWNKTIHGLIYNALKLFMEM 367 (403)
T ss_dssp HHTTSCCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 44 36777999999999988876443
No 323
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=50.24 E-value=1.4e+02 Score=26.55 Aligned_cols=139 Identities=9% Similarity=0.003 Sum_probs=84.4
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHhccC-ChHHHHHHHHcCCHHHHHHhcCC-CCccchhHHHHHHHHhhcCCchhhHHH
Q 037562 411 PVLAQLIRSNDEEVLTDACWALSYLSDG-TNDKVQAVIEAGVYPRLVELLGH-SSSSVLTPALRTIRNIVKGDDFQTQCI 488 (670)
Q Consensus 411 ~~L~~lL~~~~~~v~~~al~~L~~l~~~-~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l 488 (670)
..+..+.+++..+.+..++..+...... .++. ++.+-.++.+ +++.+....+.+++.+....+..
T Consensus 58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~~~---------l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~---- 124 (220)
T 2b6c_A 58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSLEE---------VVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTE---- 124 (220)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCHHH---------HHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGG----
T ss_pred HHHHHHHcCchhHHHHHHHHHHHHHHhhCCHHH---------HHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHH----
Confidence 4455666667788888888888765422 2211 2223344443 56667666556677765433321
Q ss_pred HhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc-CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCC
Q 037562 489 INCGALPYFLDMLVHNHEESIKKEVSWIISNITC-GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGT 567 (670)
Q Consensus 489 ~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 567 (670)
..+.+.....++ +.-+++.|..+...... .+++ . .++.+-..+.+++.-|++.+.|+|..++.. +
T Consensus 125 ----~~~~i~~W~~s~-~~w~rR~ai~~~l~~~~~~~~~---~-----~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~-~ 190 (220)
T 2b6c_A 125 ----LPTIFALFYGAE-NFWNRRVALNLQLMLKEKTNQD---L-----LKKAIIYDRTTEEFFIQKAIGWSLRQYSKT-N 190 (220)
T ss_dssp ----HHHHHHHHTTCS-SHHHHHHHHHTTTTCGGGCCHH---H-----HHHHHHHTTTCCCHHHHHHHHHHHHHHTTT-C
T ss_pred ----HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHCCCHH---H-----HHHHHHHhCCChHHHHHHHHHHHHHHHHhh-C
Confidence 235577888888 88888888765532221 1221 1 123333356678899999999999999998 6
Q ss_pred HHHHHHHHH
Q 037562 568 HEQIKHLVR 576 (670)
Q Consensus 568 ~~~~~~l~~ 576 (670)
++....++.
T Consensus 191 ~~~v~~fl~ 199 (220)
T 2b6c_A 191 PQWVEELMK 199 (220)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 665554443
No 324
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=49.70 E-value=10 Score=37.37 Aligned_cols=32 Identities=9% Similarity=0.027 Sum_probs=13.2
Q ss_pred CCCCccEEeEecCCCccccccC-CcCCCCccceee
Q 037562 153 TFPSLEILVVNYCPNMKIFSGG-ELSTPNLHKVQL 186 (670)
Q Consensus 153 ~~~~L~~L~i~~C~~l~~~p~~-~~~~~~L~~l~i 186 (670)
.|++|+.+.+- .+++.++.. ...+++|+.+.+
T Consensus 308 ~c~~L~~i~lp--~~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 308 DCVKLSSVTLP--TALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TCTTCCEEECC--TTCCEECTTTTTTCTTCCCCCC
T ss_pred CCCCCCEEEcC--ccccEEHHHHhhCCCCCCEEEE
Confidence 34455555442 123334332 123445555544
No 325
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=49.36 E-value=2.9e+02 Score=30.15 Aligned_cols=110 Identities=11% Similarity=0.066 Sum_probs=68.6
Q ss_pred hHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhcc---CChhHHHHHHHHHHHhccC---ChH
Q 037562 368 LIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIRS---NDEEVLTDACWALSYLSDG---TND 441 (670)
Q Consensus 368 i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~~---~~~~v~~~al~~L~~l~~~---~~~ 441 (670)
+.+++..-..+.+..+...+..++.+|+.-.|.....+..+++..+...|++ ..+--...++.++..++.. ...
T Consensus 340 l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~~ 419 (799)
T 1vsy_4 340 FLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDKL 419 (799)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTSTT
T ss_pred HHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCcc
Confidence 3334434347778888899999999999987766677778888888888877 4455555566666655521 111
Q ss_pred HHHHHHHcCCHHHHHHhcCCCCccchhHHHHHHHHhhc
Q 037562 442 KVQAVIEAGVYPRLVELLGHSSSSVLTPALRTIRNIVK 479 (670)
Q Consensus 442 ~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~ 479 (670)
....+. .++..++.-++.+|+.--..++..+..++.
T Consensus 420 yr~hl~--~lL~l~LpgID~ND~~KT~~tl~fi~~i~s 455 (799)
T 1vsy_4 420 YRVHIT--NVLSMLVSKLDMNDTNLTSNLINGIVSIAA 455 (799)
T ss_dssp GGGHHH--HHHHHHHHTCCSSCHHHHHHHHHHHHHHHH
T ss_pred cHHHHH--HHHHHHhccCCcccHHHHHHHHHHHHHHHH
Confidence 111111 244445555555665555556666666654
No 326
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=44.73 E-value=1.6e+02 Score=26.32 Aligned_cols=139 Identities=14% Similarity=0.100 Sum_probs=82.0
Q ss_pred HHHHhhccCChhHHHHHHHHHHHhcc-CChHHHHHHHHcCCHHHHHHhcCC-CCccchhHH-HHHHHHhhcCCchhhHHH
Q 037562 412 VLAQLIRSNDEEVLTDACWALSYLSD-GTNDKVQAVIEAGVYPRLVELLGH-SSSSVLTPA-LRTIRNIVKGDDFQTQCI 488 (670)
Q Consensus 412 ~L~~lL~~~~~~v~~~al~~L~~l~~-~~~~~~~~~~~~~~i~~L~~lL~~-~~~~v~~~a-~~~L~~l~~~~~~~~~~l 488 (670)
.+..+.+++..+.+..|+..+..... ..++ .++.+-.++.. +++.+.... ..+++.+....+.
T Consensus 65 ~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~---------~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~----- 130 (232)
T 3jxy_A 65 IIRELWDLPEREFQAAALDIMQKYKKHINET---------HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPE----- 130 (232)
T ss_dssp HHHHHHTSSBHHHHHHHHHHHHHTGGGCCGG---------GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGG-----
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHhCCHH---------HHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHH-----
Confidence 45556666667788777777764321 1121 12233334433 455555443 2455555443322
Q ss_pred HhCCChHHHHHhhccCCchhHHHHHHHHHHHhhc-CCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHHHhcCCCC
Q 037562 489 INCGALPYFLDMLVHNHEESIKKEVSWIISNITC-GNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAISNATKFGT 567 (670)
Q Consensus 489 ~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 567 (670)
...+.+...+.++ +.-+++.|+..+..... .++. ..++.+...+.+++.-|+..+.|+|..++.. +
T Consensus 131 ---~~~~~l~~W~~s~-~~w~rR~ai~~~l~~~~~~d~~--------~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~-~ 197 (232)
T 3jxy_A 131 ---LISAYIPKWIASD-NIWLQRAAILFQLKYKQKMDEE--------LLFWIIGQLHSSKEFFIQKAIGWVLREYAKT-N 197 (232)
T ss_dssp ---GGGGTHHHHHHSS-CHHHHHHHHHTTTTCGGGCCHH--------HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT-C
T ss_pred ---HHHHHHHHHhcCC-chHHHHHHHHHHHHHHhCCCHH--------HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh-C
Confidence 1345677888888 88888888765422211 1211 1233445566788899999999999999998 6
Q ss_pred HHHHHHHHHc
Q 037562 568 HEQIKHLVRE 577 (670)
Q Consensus 568 ~~~~~~l~~~ 577 (670)
++....+++.
T Consensus 198 p~~v~~fl~~ 207 (232)
T 3jxy_A 198 PDVVWEYVQN 207 (232)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 327
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=43.88 E-value=27 Score=29.32 Aligned_cols=74 Identities=12% Similarity=0.000 Sum_probs=53.8
Q ss_pred ccHHHHHHHhc-CCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHH-HHHhhcCC--CCHHHHHHHHHHHHHHcC
Q 037562 238 EILPAMVDGVW-SDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPR-FVEFLMRQ--DYPQLQFKAAWALTNIAS 311 (670)
Q Consensus 238 ~~i~~l~~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~-L~~ll~~~--~~~~v~~~a~~~L~~l~~ 311 (670)
+++..+.+.++ +.++.++..|+..|-.+..........++....++.. |++++... ....|+..++..+...+.
T Consensus 53 ~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 53 DALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 55778888887 5789999999999988877653444455666677887 78887432 125888888888777654
No 328
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=41.78 E-value=76 Score=29.05 Aligned_cols=102 Identities=16% Similarity=0.148 Sum_probs=61.0
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccc-------CChhHHHHHHHHHHhhhcCCCCCChhhh
Q 037562 334 ASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEN-------ANLSMLRTATWTLFNFCRGKPQPPFNQV 406 (670)
Q Consensus 334 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 406 (670)
.+.++..+-.++++++|+..+....+..+........++..+... .+..++..++..+.|++-....... .
T Consensus 100 ~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~--~ 177 (253)
T 3gae_A 100 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS--D 177 (253)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS--C
T ss_pred CCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc--h
Confidence 345678888999999999877663455554432244455544221 2446777888888888854211000 0
Q ss_pred hhhHHHHHHhhc---------cCChhHHHHHHHHHHHhcc
Q 037562 407 RPALPVLAQLIR---------SNDEEVLTDACWALSYLSD 437 (670)
Q Consensus 407 ~~~i~~L~~lL~---------~~~~~v~~~al~~L~~l~~ 437 (670)
......++.++. ..|++....++.+++++..
T Consensus 178 ~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 178 LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp TTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 122233333333 2377888888999998874
No 329
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=40.09 E-value=44 Score=33.11 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=64.3
Q ss_pred hCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhccc-------CChhHHHHHHHHHHhhhcCCC--CCCh
Q 037562 333 LASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNEN-------ANLSMLRTATWTLFNFCRGKP--QPPF 403 (670)
Q Consensus 333 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~-------~~~~~~~~a~~~L~~l~~~~~--~~~~ 403 (670)
+.+..+..+-.++++++|+.......+..+........++..+... .+..++..++..+.|++.... ...
T Consensus 271 l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~- 349 (425)
T 3pst_A 271 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD- 349 (425)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSC-
T ss_pred cCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch-
Confidence 3456778888999999999876653444443322245566655221 234677788888888885421 111
Q ss_pred hhhhhhHHHHHHhhc---------cCChhHHHHHHHHHHHhccCC
Q 037562 404 NQVRPALPVLAQLIR---------SNDEEVLTDACWALSYLSDGT 439 (670)
Q Consensus 404 ~~~~~~i~~L~~lL~---------~~~~~v~~~al~~L~~l~~~~ 439 (670)
....+.+..++. ..|++....++.+++++....
T Consensus 350 ---~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~~ 391 (425)
T 3pst_A 350 ---LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVE 391 (425)
T ss_dssp ---TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcC
Confidence 223344444444 358899999999999998543
No 330
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=40.09 E-value=3.1e+02 Score=27.69 Aligned_cols=142 Identities=15% Similarity=0.152 Sum_probs=89.8
Q ss_pred HHHHHHHhcCC------ChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC
Q 037562 240 LPAMVDGVWSD------DNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYPQLQFKAAWALTNIASGT 313 (670)
Q Consensus 240 i~~l~~~l~~~------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~ 313 (670)
++.+-+.+.++ |++.. +..+.++... -..+.+.+.=-+..++..|.++. +.+...|+.++. .
T Consensus 75 l~~Ik~iL~~~~~~~~lD~~~L---i~Ll~~il~~---~~Fd~VLevysve~i~~aL~S~~-~~l~~~~ckVI~-----~ 142 (500)
T 3vld_A 75 LATIKRFLTSNVSYDSLNYDYL---LDVVDKLVPM---ADFDDVLEVYSAEDLVKALRSEI-DPLKVAACRVIE-----N 142 (500)
T ss_dssp HHHHHHHHHCSSCCTTCCHHHH---HHHHHHHHHH---SCHHHHHHHSCHHHHHHHHTSSC-HHHHHHHHHHHH-----T
T ss_pred HHHHHHHHcCCccccccCHHHH---HHHHHHHHhc---CCHHHHHHhCCHHHHHHHHhcCC-hHHHHHHHHHhc-----c
Confidence 55555555322 34443 3444444443 23466777777889999999987 899999999988 3
Q ss_pred hhhHHHHHhCCChHHHHHhhCCCCHH---HHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHH
Q 037562 314 SENTKVVIDHGAVPIFVKLLASPSVD---VRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNENANLSMLRTATWT 390 (670)
Q Consensus 314 ~~~~~~i~~~~~i~~L~~lL~~~~~~---v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~ 390 (670)
+..+..+...+++..++.++-+++.. +....=.++..++.+ .-.|..+.+. .. +++..+++..++.+.......
T Consensus 143 s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Lssd-eLirrril~n-nl-~lL~~vK~~~~~i~~sRLLdl 219 (500)
T 3vld_A 143 SQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLSTD-ELIRRRLFDN-NL-PYLVSVKGRMETVSFVRLIDF 219 (500)
T ss_dssp CSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTT-TH-HHHHHHHHHCCHHHHHHHHHH
T ss_pred cCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCch-HHHHHHHHHH-hH-HHHHHHhcCCCceeHHHHHHH
Confidence 45566778889999999988775433 666666677777533 3345666654 34 455555566665555544444
Q ss_pred HHhhhc
Q 037562 391 LFNFCR 396 (670)
Q Consensus 391 L~~l~~ 396 (670)
+.-+..
T Consensus 220 l~il~~ 225 (500)
T 3vld_A 220 LTIEFQ 225 (500)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 444433
No 331
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=39.73 E-value=2.1e+02 Score=28.08 Aligned_cols=184 Identities=8% Similarity=0.024 Sum_probs=90.9
Q ss_pred hhhHHHHHHhhccCChhHHHHHHHHHHHhccCChHHHHHHHHcCCHHHHHHhcCCC-CccchhHHHHHHHHhhcCCc---
Q 037562 407 RPALPVLAQLIRSNDEEVLTDACWALSYLSDGTNDKVQAVIEAGVYPRLVELLGHS-SSSVLTPALRTIRNIVKGDD--- 482 (670)
Q Consensus 407 ~~~i~~L~~lL~~~~~~v~~~al~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~--- 482 (670)
...+-.|+.++.++|+.-|.....++..+-.........+.+ .+-..+..++... ...-....+.+++.+..+..
T Consensus 173 ~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PL 251 (392)
T 2jak_A 173 QKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIINGFALPL 251 (392)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCC
Confidence 567788999999999999998888887765433333332222 3334455555442 23345667788888876643
Q ss_pred --hhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcCChhHHHHHHHHHH
Q 037562 483 --FQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNTEFDTKKEAAWAIS 560 (670)
Q Consensus 483 --~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~ 560 (670)
+... + ....|+.+.+...-......-+.++..+...++.....+ +..+++.--..+..=...-+.-+.
T Consensus 252 Keehk~-F----l~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~ele 321 (392)
T 2jak_A 252 KEEHKI-F----LLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNELE 321 (392)
T ss_dssp CHHHHH-H----HHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHSSCSSCCTTHHHHHHHHH
T ss_pred cHHHHH-H----HHHHhHhhccCCcHHHhHHHHHHHHHHHHhcCchhHHHH-----HHHHHHhCCCCCchHHHHHHHHHH
Confidence 1111 1 122333333333112222333444444444334322222 222222211222211122222233
Q ss_pred HhcCCCCHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHH
Q 037562 561 NATKFGTHEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGL 602 (670)
Q Consensus 561 ~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l 602 (670)
.+....++.....+.. .....+.+.+.+++-+|.++|+...
T Consensus 322 eiLe~~~~~~f~~i~~-~lF~~la~ci~S~hfqVAErAL~~w 362 (392)
T 2jak_A 322 EILDVIEPSEFVKIME-PLFRQLAKCVSSPHFQVAERALYYW 362 (392)
T ss_dssp HHHHTCCHHHHHHHHH-HHHHHHHHHHTCSSHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHH-HHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 3333334444333222 2566677777888888887776543
No 332
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=39.26 E-value=2.2e+02 Score=28.21 Aligned_cols=134 Identities=13% Similarity=0.073 Sum_probs=76.1
Q ss_pred chhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhh
Q 037562 466 VLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNHEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQ 545 (670)
Q Consensus 466 v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~ 545 (670)
.+-.++..+.-++...+.. . .+...+-..+.+. .+..+.-++++++|+..+.......+........+++.+.
T Consensus 242 ~~FPaLDLLRl~v~~p~~~-~-----~l~~li~~~l~~~-~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~ 314 (425)
T 3pst_A 242 IKTPAYDIVRLIVKKLPYS-S-----DIKDYIEEGLGNK-NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETID 314 (425)
T ss_dssp CCHHHHHHHHHHGGGCSCG-G-----GGHHHHHHHTTCS-SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSC
T ss_pred cccHHHHHHHHHHcCCchH-H-----HHHHHHHHhcCCC-ChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHH
Confidence 3666777777776644321 1 1122232334444 7788999999999997653322333322223444555442
Q ss_pred --------cCChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHHHHhhcc---------CCChHHHHHHHHHHHHHHHh
Q 037562 546 --------NTEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKPLCDLLL---------CADPKIVTVCLEGLENILKV 608 (670)
Q Consensus 546 --------~~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~L~~ll~---------~~~~~v~~~a~~~l~~l~~~ 608 (670)
..+..++..++..+.|++...... . .+......+.+++. ..+++...+++-|+++++..
T Consensus 315 ~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~---~-~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~~ 390 (425)
T 3pst_A 315 TEFSQASAKQSQNLAIAVSTLIFNYSALVTKG---N-SDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 390 (425)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHS---C-SCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccCCCchHHHHHHHHHHHHHHHHhcc---c-chHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 124578888888888887631000 0 00112234444443 35889999999999999865
Q ss_pred hh
Q 037562 609 GV 610 (670)
Q Consensus 609 ~~ 610 (670)
++
T Consensus 391 ~~ 392 (425)
T 3pst_A 391 EP 392 (425)
T ss_dssp CH
T ss_pred CH
Confidence 43
No 333
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=38.26 E-value=2.6e+02 Score=26.42 Aligned_cols=138 Identities=13% Similarity=0.155 Sum_probs=83.4
Q ss_pred chhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhh-----cc---CCchhHHHHHHHHHHHhhcCCHHHHHHHHhcCCh
Q 037562 466 VLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDML-----VH---NHEESIKKEVSWIISNITCGNREQIQAVIDSGLI 537 (670)
Q Consensus 466 v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l-----~~---~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i 537 (670)
+++..+..+.......++ .+ .+....+|.|++.. ++ ..+++|-...+.++..+...-.+....+.+ .++
T Consensus 45 vKkeiLkLiet~i~~~~d-~~-~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~-~VF 121 (321)
T 1w9c_A 45 VKRETLKLISGWVSRSND-PQ-MVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFD-AVF 121 (321)
T ss_dssp HHHHHHHHHHHHHTTCSC-HH-HHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHcCCC-HH-HHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHH
Confidence 555666666666554333 22 22234666666532 11 115677777777777775543444444444 245
Q ss_pred HHHHHHhh---cCChhHHHHHHHHHHHhcCCC-------CHHHHHHHHHcCCcHHHHhhccCCChHHHHHHHHHHHHHHH
Q 037562 538 GPIVNLLQ---NTEFDTKKEAAWAISNATKFG-------THEQIKHLVREGCVKPLCDLLLCADPKIVTVCLEGLENILK 607 (670)
Q Consensus 538 ~~L~~ll~---~~~~~v~~~a~~aL~~l~~~~-------~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~l~~l~~ 607 (670)
..-++++. .+-|+.|.+=...|..+..++ .+++.+. +++.++-..++.+.+|...++.++..++.
T Consensus 122 e~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fkl-----vidsiiWa~kH~~r~V~e~gL~il~~ll~ 196 (321)
T 1w9c_A 122 ECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKL-----VLDSIIWAFKHTMRNVADTGLQILFTLLQ 196 (321)
T ss_dssp HHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHH-----HHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH-----HHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 55556665 344777777666666665543 3333333 46667777899999999999999999988
Q ss_pred hhhh
Q 037562 608 VGVA 611 (670)
Q Consensus 608 ~~~~ 611 (670)
.-.+
T Consensus 197 n~~~ 200 (321)
T 1w9c_A 197 NVAQ 200 (321)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7653
No 334
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=36.27 E-value=38 Score=32.82 Aligned_cols=102 Identities=17% Similarity=0.174 Sum_probs=62.5
Q ss_pred hCCCCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc-------cCChhHHHHHHHHHHhhhcCCC--CCCh
Q 037562 333 LASPSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE-------NANLSMLRTATWTLFNFCRGKP--QPPF 403 (670)
Q Consensus 333 L~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~-------~~~~~~~~~a~~~L~~l~~~~~--~~~~ 403 (670)
+.+..+..+-.++++++|+..+....+..+........++..+.. ..+..++..++..+.|++.... ...
T Consensus 208 ~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~- 286 (362)
T 3l3f_X 208 LGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD- 286 (362)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC-
T ss_pred cCCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch-
Confidence 335667888899999999987665334444321113344554421 1234677778888888885421 111
Q ss_pred hhhhhhHHHHHHhhc---------cCChhHHHHHHHHHHHhccC
Q 037562 404 NQVRPALPVLAQLIR---------SNDEEVLTDACWALSYLSDG 438 (670)
Q Consensus 404 ~~~~~~i~~L~~lL~---------~~~~~v~~~al~~L~~l~~~ 438 (670)
....+.+..++. ..|++....++.+++++...
T Consensus 287 ---~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~ 327 (362)
T 3l3f_X 287 ---LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 327 (362)
T ss_dssp ---TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 223344555554 35889999999999999853
No 335
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=33.87 E-value=2e+02 Score=23.67 Aligned_cols=80 Identities=15% Similarity=0.185 Sum_probs=52.5
Q ss_pred cHHHHhhccC--CChHHHHHHHHHHHHHHHhhhhhhccCCCCCCccHHHHHHHHhchHHHHHHhhc------CCCHHHHH
Q 037562 580 VKPLCDLLLC--ADPKIVTVCLEGLENILKVGVAEMNTGTAVGDFNQYAQLVEEAEGLEKIENLQS------HDDNGISE 651 (670)
Q Consensus 580 i~~L~~ll~~--~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~------~~~~~v~~ 651 (670)
+..|-.-+.+ .+.....+++..+..++..+.... ....-.....+..|..++. +....|++
T Consensus 61 m~~l~kRL~d~~k~WR~vyKaL~lleyLl~nGse~v-----------v~~~r~~~~~I~~L~~F~y~d~~g~D~G~nVR~ 129 (148)
T 1inz_A 61 MSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERV-----------SQQCKENMYAVQTLKDFQYVDRDGKDQGVNVRE 129 (148)
T ss_dssp HHHHHHGGGCCSSCTHHHHHHHHHHHHHHHTTCHHH-----------HHHHHHTHHHHHHHHHCCCCCSSCCCCCHHHHH
T ss_pred HHHHHHHHccCCcchhHhhHHHHHHHHHHHhCCHHH-----------HHHHHHhHHHHHhhcceeeeCCCCcCchHHHHH
Confidence 3444444443 467788899999999998876543 2333333334556665422 22457899
Q ss_pred HHHHHHHHhcCCccccCCC
Q 037562 652 KAVEILETYWSSRVIGRGR 670 (670)
Q Consensus 652 ~a~~~l~~~~~~~~~~~~~ 670 (670)
+|..+++-+-+++-...+|
T Consensus 130 kAk~l~~LL~D~e~L~~eR 148 (148)
T 1inz_A 130 KAKQLVALLRDEDRLREER 148 (148)
T ss_dssp HHHHHHHHHTSCCSCCCCC
T ss_pred HHHHHHHHhCCHHHHHhcC
Confidence 9999999888888777776
No 336
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=32.45 E-value=49 Score=30.32 Aligned_cols=132 Identities=11% Similarity=0.021 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHH-hhcCCCCHHHHHHHHHHHHHHcCCChh-hHHHHHhCCChHHHHH
Q 037562 254 LQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVE-FLMRQDYPQLQFKAAWALTNIASGTSE-NTKVVIDHGAVPIFVK 331 (670)
Q Consensus 254 ~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~-ll~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~i~~~~~i~~L~~ 331 (670)
.++.++..++-++.+.+ . .+.+..++. .+.+.. +..+..++++++|+.. ++. .++.+........++.
T Consensus 70 ~~fP~lDllRl~~~~~~--~------~~~l~~~l~~~~~~~~-~~~~ml~lR~l~NlF~-~~~~g~~l~~~~~~~~~i~~ 139 (253)
T 3gae_A 70 IKTPAYDIVRLIVKKLP--Y------SSDIKDYIEEGLGNKN-ITLTMLTVRILVNCFN-NENWGVKLLESNQVYKSIFE 139 (253)
T ss_dssp CCHHHHHHHHHHGGGCS--C------GGGGHHHHHHHTTCSS-HHHHHHHHHHHHHHTT-CTTTHHHHHTSHHHHTTHHH
T ss_pred ccchHHHHHHHHHcCCc--h------HHHHHHHHHHhcCCCc-hhHHHHHHHHHHHccc-CCchHHHHHhcchhHHHHHH
Confidence 46778888887776632 1 123333333 233344 7899999999999998 455 4555543222333444
Q ss_pred hh----CC----CCHHHHHHHHHHHHHhhCCCchhHHHHHhcCChHHHHHHhcc--------cCChhHHHHHHHHHHhhh
Q 037562 332 LL----AS----PSVDVRKQTVWALGNVAGDSPRCRDLVLSQGALIPLLAELNE--------NANLSMLRTATWTLFNFC 395 (670)
Q Consensus 332 lL----~~----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Ll~~l~~--------~~~~~~~~~a~~~L~~l~ 395 (670)
.+ .+ ++..++..++..+.|++......+. +......++..+.. ..|++...-++.+++++.
T Consensus 140 ~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~ 216 (253)
T 3gae_A 140 TIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLA 216 (253)
T ss_dssp HSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHH
Confidence 33 22 3567888899999999832100000 11123445555532 236677777788888877
Q ss_pred cCC
Q 037562 396 RGK 398 (670)
Q Consensus 396 ~~~ 398 (670)
..+
T Consensus 217 ~~~ 219 (253)
T 3gae_A 217 TVE 219 (253)
T ss_dssp HHS
T ss_pred hCc
Confidence 543
No 337
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=28.22 E-value=50 Score=27.46 Aligned_cols=72 Identities=13% Similarity=0.020 Sum_probs=50.8
Q ss_pred hHHHHHHhhc-CChhHHHHHHHHHHHhcCCCCHHHHHHHHHcCCcHH-HHhhccCC---ChHHHHHHHHHHHHHHHh
Q 037562 537 IGPIVNLLQN-TEFDTKKEAAWAISNATKFGTHEQIKHLVREGCVKP-LCDLLLCA---DPKIVTVCLEGLENILKV 608 (670)
Q Consensus 537 i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~~~~~~~~~l~~~~~i~~-L~~ll~~~---~~~v~~~a~~~l~~l~~~ 608 (670)
+..+..-+.. .++.++..|+..|..+..++...+...+.....+.. |+.++... ...|+..++..+......
T Consensus 55 ~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~ 131 (152)
T 3rru_A 55 VKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQG 131 (152)
T ss_dssp HHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHH
Confidence 4455555653 577788889999999998888777777665555543 66666432 347999999998887654
No 338
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=28.03 E-value=1.7e+02 Score=25.41 Aligned_cols=138 Identities=13% Similarity=0.092 Sum_probs=0.0
Q ss_pred hHHHHHHhcccCChhHHHHHHHHHHhhhcCCCCCChhhhhhhHHHHHHhhc------cCChhHHHHHHHHHHHhccCChH
Q 037562 368 LIPLLAELNENANLSMLRTATWTLFNFCRGKPQPPFNQVRPALPVLAQLIR------SNDEEVLTDACWALSYLSDGTND 441 (670)
Q Consensus 368 i~~Ll~~l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~i~~L~~lL~------~~~~~v~~~al~~L~~l~~~~~~ 441 (670)
...+.+.+.. ..+..|...|..=..- ...+|.++.++. -.|.......+.....+..+..-
T Consensus 13 f~~It~a~~~----~~r~~aL~sL~~D~gL---------~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l 79 (196)
T 4atg_A 13 FDKILSMIKS----DMKDIAIECLEKESGL---------QQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHV 79 (196)
T ss_dssp HHHHHHHHTS----TTHHHHHHHHHHCSSC---------TTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHh----HHHHHHHHHHhcCCCh---------hhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCC
Q ss_pred HHHHHHHcCCHHHHHHhcCC---CCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCC-chhHHHHHHHHH
Q 037562 442 KVQAVIEAGVYPRLVELLGH---SSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNH-EESIKKEVSWII 517 (670)
Q Consensus 442 ~~~~~~~~~~i~~L~~lL~~---~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~-~~~v~~~a~~~L 517 (670)
..+..+. .+++.++.++-. ....+|..|+..++.++......-. -....+...+.+.+.++. +......|...+
T Consensus 80 ~lepYlH-~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~-~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL 157 (196)
T 4atg_A 80 FIDPYLH-QILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYK-TLAPRVLKTLKGVWMDPNRSEDSQYGALYCL 157 (196)
T ss_dssp CCGGGHH-HHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTST-THHHHHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred ChHHHHH-HHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCc-hHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Q ss_pred HHh
Q 037562 518 SNI 520 (670)
Q Consensus 518 ~~l 520 (670)
..+
T Consensus 158 ~~l 160 (196)
T 4atg_A 158 SIL 160 (196)
T ss_dssp HHH
T ss_pred HHh
No 339
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=26.49 E-value=1.4e+02 Score=24.47 Aligned_cols=77 Identities=6% Similarity=0.191 Sum_probs=54.0
Q ss_pred HHHHHHHcCCHHHHHHhcCC------CCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCC-chhHHHHHH
Q 037562 442 KVQAVIEAGVYPRLVELLGH------SSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNH-EESIKKEVS 514 (670)
Q Consensus 442 ~~~~~~~~~~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~-~~~v~~~a~ 514 (670)
....+++.|++..+-..|.. ++..+|...+.+|.++- -....+.++|+-..++.+-++.. .++.+.-|-
T Consensus 53 l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP----I~~e~Lk~SglGkvv~~l~k~~~et~~nk~la~ 128 (145)
T 2xpp_A 53 LQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK----IHKEHLVTSGVGKIVYFYSINPKESKEVRASAK 128 (145)
T ss_dssp THHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHCHHHHHHHHHHCTTSCHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC----CCHHHhhcCCCCcchhhhhcCCccCHHHHHHHH
Confidence 34568888999999999875 34568999999998873 22455667766666666555542 667888777
Q ss_pred HHHHHhhc
Q 037562 515 WIISNITC 522 (670)
Q Consensus 515 ~~L~~l~~ 522 (670)
..+...++
T Consensus 129 ~Li~~WsR 136 (145)
T 2xpp_A 129 ALVQKWTN 136 (145)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766643
No 340
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=25.98 E-value=5.2e+02 Score=26.05 Aligned_cols=189 Identities=15% Similarity=0.154 Sum_probs=109.9
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCHHHHHHhhcCCCCH-H-HHHHHHHHHHHHcCCChhhH
Q 037562 240 LPAMVDGVWSDDNSLQLEATTLFINLLSFDRSPPIDEVIQSGVVPRFVEFLMRQDYP-Q-LQFKAAWALTNIASGTSENT 317 (670)
Q Consensus 240 i~~l~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~l~~L~~ll~~~~~~-~-v~~~a~~~L~~l~~~~~~~~ 317 (670)
+..+++.|+++++.+...|+.++. . +.+...+..++++..+++++-+++.+ . +..+.=.++..++. +.-.+
T Consensus 118 ve~i~~aL~S~~~~l~~~~ckVI~----~--s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Lss-deLir 190 (500)
T 3vld_A 118 AEDLVKALRSEIDPLKVAACRVIE----N--SQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLST-DELIR 190 (500)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHH----T--CSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHTT-SHHHH
T ss_pred HHHHHHHHhcCChHHHHHHHHHhc----c--cCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCc-hHHHH
Confidence 678899999998999988888886 2 56677788899999999988766522 3 77777778888875 44456
Q ss_pred HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC--CchhHHHHHhcCChHHHHHHhcccCChhHHHHHHHHHHhhh
Q 037562 318 KVVIDHGAVPIFVKLLASPSVDVRKQTVWALGNVAGD--SPRCRDLVLSQGALIPLLAELNENANLSMLRTATWTLFNFC 395 (670)
Q Consensus 318 ~~i~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~--~~~~~~~i~~~~~i~~Ll~~l~~~~~~~~~~~a~~~L~~l~ 395 (670)
+.+.+ +..+.+...=++.++.+....+..+.-+... .++.++.++-.+ -..+.+.+ + |+-+....+..-.++.
T Consensus 191 rril~-nnl~lL~~vK~~~~~i~~sRLLdll~il~~~i~~~eF~~~Lfi~~-~~Ei~k~~-d--Dil~fI~ii~yYtkLl 265 (500)
T 3vld_A 191 RRLFD-NNLPYLVSVKGRMETVSFVRLIDFLTIEFQFISGPEFKDIIFCFT-KEEILKSV-E--DILVFIELVNYYTKFL 265 (500)
T ss_dssp HHHHT-TTHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCCTTTCCHHHHCCC-HHHHHHHT-T--SHHHHHHHHHHHHHHH
T ss_pred HHHHH-HhHHHHHHHhcCCCceeHHHHHHHHHHHhcccCcccCCcceeecc-HHHHHhhh-c--chHHHHHHHHHHHHHH
Confidence 66665 4566665554446666666566666555432 244444433222 11222222 1 3322222222211211
Q ss_pred cCC--CCCC--hhhhhhhHHHHHHhhccC--ChhHHH----HHHHHHHHhccCCh
Q 037562 396 RGK--PQPP--FNQVRPALPVLAQLIRSN--DEEVLT----DACWALSYLSDGTN 440 (670)
Q Consensus 396 ~~~--~~~~--~~~~~~~i~~L~~lL~~~--~~~v~~----~al~~L~~l~~~~~ 440 (670)
... .... .....+.++.+.++.... .++++. .....++.++..++
T Consensus 266 ~~~~~~~~~w~l~~i~p~l~~~~~ly~~~d~~~dv~~f~~s~l~~lfa~lSyl~d 320 (500)
T 3vld_A 266 LEIRNQDKYWALRHVKKILPVFAQLFEDTENYPDVRAFSTNCLLQLFAEVSRIEE 320 (500)
T ss_dssp HHHHHTTCGGGHHHHGGGHHHHHHHHHCTTTCHHHHHHSHHHHHHHHHHHTTSSC
T ss_pred HHhcccchHHHHHHhHHHHHHHHHHhcCchhhhHHHHHhHHHHHHHHHHHhhccc
Confidence 110 1222 224577888888888644 456544 44556666665443
No 341
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=21.17 E-value=2.8e+02 Score=22.65 Aligned_cols=78 Identities=13% Similarity=0.099 Sum_probs=56.1
Q ss_pred hhhHHHHhCCChHHHHHhhccC-----CchhHHHHHHHHHHHhhcCCHHHHHHHHhcCChHHHHHHhhcC--ChhHHHHH
Q 037562 483 FQTQCIINCGALPYFLDMLVHN-----HEESIKKEVSWIISNITCGNREQIQAVIDSGLIGPIVNLLQNT--EFDTKKEA 555 (670)
Q Consensus 483 ~~~~~l~~~~~~~~L~~~l~~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a 555 (670)
.....+++.|++..+-..|..- ++..+|.....+|.++- -....+.+.|+-..++.+-+++ .++.+..|
T Consensus 52 ~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~lP----I~~e~Lk~SglGkvv~~l~k~~~et~~nk~la 127 (145)
T 2xpp_A 52 ALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTMK----IHKEHLVTSGVGKIVYFYSINPKESKEVRASA 127 (145)
T ss_dssp TTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHCHHHHHHHHHHCTTSCHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHCC----CCHHHhhcCCCCcchhhhhcCCccCHHHHHHH
Confidence 4456688999999999998642 26789999999999983 2245667776666666555544 46788888
Q ss_pred HHHHHHhcC
Q 037562 556 AWAISNATK 564 (670)
Q Consensus 556 ~~aL~~l~~ 564 (670)
-..+..++.
T Consensus 128 ~~Li~~WsR 136 (145)
T 2xpp_A 128 KALVQKWTN 136 (145)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877654
No 342
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=20.88 E-value=94 Score=30.11 Aligned_cols=103 Identities=11% Similarity=0.127 Sum_probs=60.8
Q ss_pred CCCCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhcc----C---CchhHHHHHHHHHHHhhcCCHHHHHHHH
Q 037562 460 GHSSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVH----N---HEESIKKEVSWIISNITCGNREQIQAVI 532 (670)
Q Consensus 460 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~----~---~~~~v~~~a~~~L~~l~~~~~~~~~~l~ 532 (670)
.+..+..+..++++++|+..+.......+........+++.+.. . .+..++..++..+-|++....... .
T Consensus 209 ~~~~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~---~ 285 (362)
T 3l3f_X 209 GNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN---S 285 (362)
T ss_dssp TCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTC---S
T ss_pred CCCChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhccc---c
Confidence 34456688889999999987554333322221122334443311 1 145788888888999876211100 0
Q ss_pred hcCChHHHHHHhh---------cCChhHHHHHHHHHHHhcCC
Q 037562 533 DSGLIGPIVNLLQ---------NTEFDTKKEAAWAISNATKF 565 (670)
Q Consensus 533 ~~~~i~~L~~ll~---------~~~~~v~~~a~~aL~~l~~~ 565 (670)
+......+.+++. ..+.+....++-||+++...
T Consensus 286 ~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~ 327 (362)
T 3l3f_X 286 DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATV 327 (362)
T ss_dssp CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhc
Confidence 1123445555555 35889999999999999863
No 343
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=20.08 E-value=2.7e+02 Score=23.43 Aligned_cols=78 Identities=9% Similarity=0.135 Sum_probs=55.7
Q ss_pred HHHHHHHHcCCHHHHHHhcCC------CCccchhHHHHHHHHhhcCCchhhHHHHhCCChHHHHHhhccCC-chhHHHHH
Q 037562 441 DKVQAVIEAGVYPRLVELLGH------SSSSVLTPALRTIRNIVKGDDFQTQCIINCGALPYFLDMLVHNH-EESIKKEV 513 (670)
Q Consensus 441 ~~~~~~~~~~~i~~L~~lL~~------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~~~~L~~~l~~~~-~~~v~~~a 513 (670)
.....+++.|++..+-..|.. ++-.++...+.+|.++- -....+..+|+-..++-+-++.. .++.+.-|
T Consensus 67 ~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~lP----I~~e~Lk~SglGkvV~~l~k~~~et~~nkrla 142 (170)
T 3nfq_A 67 NLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDLP----VKTEHLKESGLGRVVIFYTKSKRVEAQLARLA 142 (170)
T ss_dssp GGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTSC----CCHHHHHHHSHHHHHHHHHHCTTSCHHHHHHH
T ss_pred HHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHCC----CCHHHHhhCCCCceeeehhcCCcccHHHHHHH
Confidence 345568888999999999875 34468899999998874 23455666766666665555542 67788888
Q ss_pred HHHHHHhhc
Q 037562 514 SWIISNITC 522 (670)
Q Consensus 514 ~~~L~~l~~ 522 (670)
-..+...+.
T Consensus 143 ~~Li~~WsR 151 (170)
T 3nfq_A 143 EKLIAEWTR 151 (170)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHH
Confidence 888888765
Done!