BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>037564
FSGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPP
SRVSVIIGEDYQLKKSILRDYLTNKKYFIVLDD

High Scoring Gene Products

Symbol, full name Information P value
AT3G46730 protein from Arabidopsis thaliana 3.4e-05
RPM1
AT3G07040 		protein from Arabidopsis thaliana 0.00027

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  037564
        (93 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:504956483 - symbol:AT3G46730 species:3702 "Ara...   110  3.4e-05   1
TAIR|locus:2077572 - symbol:RPM1 "RESISTANCE TO P. SYRING...   102  0.00027   1


>TAIR|locus:504956483 [details] [associations]
            symbol:AT3G46730 species:3702 "Arabidopsis thaliana"
            [GO:0006952 "defense response" evidence=IEA;ISS] [GO:0043531 "ADP
            binding" evidence=IEA] InterPro:IPR000767 InterPro:IPR002182
            Pfam:PF00931 PRINTS:PR00364 GO:GO:0005524 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0006952 GO:GO:0043531 EMBL:AL096859
            HOGENOM:HOG000237753 ProtClustDB:CLSN2684836 IPI:IPI00520859
            PIR:T12977 RefSeq:NP_190257.1 UniGene:At.65257
            ProteinModelPortal:Q9STE7 SMR:Q9STE7 PaxDb:Q9STE7 PRIDE:Q9STE7
            EnsemblPlants:AT3G46730.1 GeneID:823826 KEGG:ath:AT3G46730
            TAIR:At3g46730 eggNOG:NOG270317 InParanoid:Q9STE7 OMA:WHEVCAS
            PhylomeDB:Q9STE7 Genevestigator:Q9STE7 GermOnline:AT3G46730
            Uniprot:Q9STE7
        Length = 847

 Score = 110 (43.8 bits), Expect = 3.4e-05, P = 3.4e-05
 Identities = 32/91 (35%), Positives = 42/91 (46%)

Query:     7 ILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKS--VMPPSRVS 64
             I       KTA     YN+  VK  FDC AW  VS  Y  R +L  II+S  ++    + 
Sbjct:   190 IFGMGGLGKTALARKLYNSGDVKRRFDCRAWTYVSQEYKTRDILIRIIRSLGIVSAEEME 249

Query:    65 VI--IGEDYQLKKSILRDYLTNKKYFIVLDD 93
              I    ED +L+   L   L  K Y +V+DD
Sbjct:   250 KIKMFEEDEELEV-YLYGLLEGKNYMVVVDD 279


>TAIR|locus:2077572 [details] [associations]
            symbol:RPM1 "RESISTANCE TO P. SYRINGAE PV MACULICOLA 1"
            species:3702 "Arabidopsis thaliana" [GO:0006952 "defense response"
            evidence=IEA;ISS;TAS] [GO:0043531 "ADP binding" evidence=IEA]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005886 "plasma
            membrane" evidence=IDA] [GO:0000166 "nucleotide binding"
            evidence=ISS] [GO:0009626 "plant-type hypersensitive response"
            evidence=IDA] Pfam:PF00560 InterPro:IPR001611 InterPro:IPR000767
            InterPro:IPR002182 Pfam:PF00931 PRINTS:PR00364 GO:GO:0005886
            GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
            eggNOG:COG4886 GO:GO:0012505 GO:GO:0043531 GO:GO:0009626
            EMBL:AC016827 EMBL:X87851 IPI:IPI00526839 PIR:A57072
            RefSeq:NP_187360.1 UniGene:At.40415 ProteinModelPortal:Q39214
            SMR:Q39214 STRING:Q39214 PRIDE:Q39214 EnsemblPlants:AT3G07040.1
            GeneID:819889 KEGG:ath:AT3G07040 TAIR:At3g07040
            HOGENOM:HOG000237754 InParanoid:Q39214 KO:K13457 OMA:WREISIA
            PhylomeDB:Q39214 ProtClustDB:CLSN2915520 ArrayExpress:Q39214
            Genevestigator:Q39214 Uniprot:Q39214
        Length = 926

 Score = 102 (41.0 bits), Expect = 0.00027, P = 0.00027
 Identities = 27/83 (32%), Positives = 45/83 (54%)

Query:    15 KTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQL- 73
             KT  +A+ + +  V+ +F+ +AWV +S SY    V   +IK     +    I  E Y L 
Sbjct:   206 KTTLSANIFKSQSVRRHFESYAWVTISKSYVIEDVFRTMIKEFYKEADTQ-IPAELYSLG 264

Query:    74 -KKSI--LRDYLTNKKYFIVLDD 93
              ++ +  L +YL +K+Y +VLDD
Sbjct:   265 YRELVEKLVEYLQSKRYIVVLDD 287


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.140   0.426    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       93        93   0.00091  102 3  11 22  0.44    29
                                                     29  0.41    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  557 (59 KB)
  Total size of DFA:  114 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.93u 0.11s 11.04t   Elapsed:  00:00:01
  Total cpu time:  10.93u 0.11s 11.04t   Elapsed:  00:00:01
  Start:  Tue May 21 02:01:23 2013   End:  Tue May 21 02:01:24 2013

Back to top