BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037564
         (93 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2PZZ|A Chain A, 2.2 A Resolution Crystal Structure Of Upf0201 Protein From
           Methanococcus Jannaschii
 pdb|2PZZ|B Chain B, 2.2 A Resolution Crystal Structure Of Upf0201 Protein From
           Methanococcus Jannaschii
 pdb|2PZZ|C Chain C, 2.2 A Resolution Crystal Structure Of Upf0201 Protein From
           Methanococcus Jannaschii
 pdb|2PZZ|D Chain D, 2.2 A Resolution Crystal Structure Of Upf0201 Protein From
           Methanococcus Jannaschii
          Length = 147

 Score = 30.0 bits (66), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 21/43 (48%)

Query: 28  VKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGED 70
           V F  D H  + V I  D    +  IIK + P ++  VII ED
Sbjct: 94  VNFDIDTHGGIFVKILADENEDIXKIIKDIAPRTKGGVIINED 136


>pdb|3BH4|A Chain A, High Resolution Crystal Structure Of Bacillus
           Amyloliquefaciens Alpha-Amylase
 pdb|3BH4|B Chain B, High Resolution Crystal Structure Of Bacillus
           Amyloliquefaciens Alpha-Amylase
          Length = 483

 Score = 27.3 bits (59), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 13  FDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQ 72
            +KT+F    ++   V  +F+  A       YD R +LD  + S  P   V+ +   D Q
Sbjct: 274 LNKTSFNQSVFD---VPLHFNLQAASSQGGGYDMRRLLDGTVVSRHPEKAVTFVENHDTQ 330

Query: 73  LKKSI 77
             +S+
Sbjct: 331 PGQSL 335


>pdb|3TD7|A Chain A, Crysal Structure Of The Mimivirus Sulfhydryl Oxidase R596
          Length = 295

 Score = 26.6 bits (57), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 15  KTAFTADTYNNNHV--KFYFDCHAWVRVSISYDFRMVLDDII 54
           KTA T +   N H   K+++D H  V   +  D+ +  +D++
Sbjct: 98  KTALTNEVLRNRHTLTKWFYDVHNAVNNKLEVDYGLSYEDVV 139


>pdb|3GWN|A Chain A, Crystal Structure Of The Fad Binding Domain From Mimivirus
           Sulfhydryl Oxidase R596
 pdb|3GWN|B Chain B, Crystal Structure Of The Fad Binding Domain From Mimivirus
           Sulfhydryl Oxidase R596
          Length = 114

 Score = 25.8 bits (55), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 15  KTAFTADTYNNNHV--KFYFDCHAWVRVSISYDFRMVLDDII 54
           KTA T +   N H   K+++D H  V   +  D+ +  +D++
Sbjct: 64  KTALTNEVLRNRHTLTKWFYDVHNAVNNKLEVDYGLSYEDVV 105


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.140    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,673,897
Number of Sequences: 62578
Number of extensions: 86916
Number of successful extensions: 228
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 4
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)