Query 037564
Match_columns 93
No_of_seqs 187 out of 1221
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 13:33:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037564.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037564hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 99.9 2.1E-23 4.5E-28 140.7 10.3 89 3-93 180-269 (889)
2 PF00931 NB-ARC: NB-ARC domain 99.9 5.2E-23 1.1E-27 124.6 9.1 91 2-93 19-109 (287)
3 PLN03210 Resistant to P. syrin 99.6 1.4E-15 3.1E-20 105.9 9.0 82 3-93 208-304 (1153)
4 PF13401 AAA_22: AAA domain; P 99.5 1E-13 2.2E-18 75.5 5.4 86 2-93 4-95 (131)
5 cd01128 rho_factor Transcripti 99.5 4E-13 8.7E-18 80.5 7.3 90 3-93 17-111 (249)
6 TIGR03015 pepcterm_ATPase puta 99.4 2.9E-11 6.4E-16 72.9 11.0 83 3-93 44-131 (269)
7 PRK00411 cdc6 cell division co 99.3 2.7E-11 5.9E-16 76.6 10.1 87 3-93 56-146 (394)
8 PRK09376 rho transcription ter 99.3 4.6E-12 9.9E-17 79.8 5.6 90 3-93 170-264 (416)
9 TIGR02928 orc1/cdc6 family rep 99.3 4.5E-11 9.8E-16 74.9 9.9 86 3-93 41-137 (365)
10 TIGR00767 rho transcription te 99.2 5.4E-11 1.2E-15 75.2 7.4 90 3-93 169-263 (415)
11 PF05729 NACHT: NACHT domain 99.2 2.4E-10 5.1E-15 64.1 7.0 81 3-93 1-89 (166)
12 COG1474 CDC6 Cdc6-related prot 99.1 2.7E-09 5.8E-14 67.3 9.1 83 5-93 45-131 (366)
13 PRK04841 transcriptional regul 98.9 1.2E-08 2.6E-13 70.1 9.6 86 2-93 32-129 (903)
14 smart00382 AAA ATPases associa 98.9 1.2E-08 2.7E-13 55.2 6.9 23 2-24 2-24 (148)
15 PF13173 AAA_14: AAA domain 98.9 5.6E-09 1.2E-13 56.9 5.2 41 1-44 1-41 (128)
16 PTZ00202 tuzin; Provisional 98.9 5.2E-08 1.1E-12 62.9 9.8 76 2-91 286-367 (550)
17 cd00009 AAA The AAA+ (ATPases 98.9 2.9E-08 6.3E-13 54.2 7.7 40 2-43 19-58 (151)
18 PRK08118 topology modulation p 98.9 1.1E-09 2.3E-14 62.3 1.8 34 4-37 3-37 (167)
19 PF13191 AAA_16: AAA ATPase do 98.8 1.1E-08 2.4E-13 58.4 5.6 28 2-31 24-51 (185)
20 PF04665 Pox_A32: Poxvirus A32 98.8 1.1E-08 2.4E-13 61.2 5.5 34 4-39 15-48 (241)
21 PRK12608 transcription termina 98.8 3.3E-08 7.1E-13 62.4 7.7 88 4-93 135-228 (380)
22 PRK07261 topology modulation p 98.8 3.6E-08 7.9E-13 56.3 6.4 54 4-57 2-56 (171)
23 PRK09361 radB DNA repair and r 98.8 3.8E-08 8.3E-13 58.2 6.6 43 3-48 24-66 (225)
24 PRK11331 5-methylcytosine-spec 98.8 1.7E-08 3.7E-13 65.0 5.1 49 3-51 195-243 (459)
25 PTZ00112 origin recognition co 98.8 1.2E-07 2.6E-12 65.5 9.2 86 3-93 782-877 (1164)
26 PRK08116 hypothetical protein; 98.8 6.9E-08 1.5E-12 58.8 7.4 34 4-39 116-149 (268)
27 TIGR02237 recomb_radB DNA repa 98.7 9.3E-08 2E-12 55.9 7.5 47 2-51 12-58 (209)
28 PF00004 AAA: ATPase family as 98.7 1.3E-08 2.7E-13 55.2 3.5 20 5-24 1-20 (132)
29 PF00448 SRP54: SRP54-type pro 98.7 9.3E-08 2E-12 55.8 6.8 55 2-58 1-56 (196)
30 cd01123 Rad51_DMC1_radA Rad51_ 98.7 1.2E-07 2.5E-12 56.4 7.2 91 2-93 19-123 (235)
31 PF01637 Arch_ATPase: Archaeal 98.7 2.3E-08 4.9E-13 58.8 4.1 23 2-24 20-42 (234)
32 PF13207 AAA_17: AAA domain; P 98.7 1.5E-08 3.3E-13 54.4 2.7 21 4-24 1-21 (121)
33 PF05621 TniB: Bacterial TniB 98.7 4.5E-07 9.8E-12 55.8 9.0 86 4-93 63-153 (302)
34 KOG0744 AAA+-type ATPase [Post 98.7 7.1E-08 1.5E-12 59.9 5.3 25 2-26 177-201 (423)
35 KOG2543 Origin recognition com 98.6 2.5E-07 5.4E-12 58.4 7.2 86 3-93 31-123 (438)
36 TIGR02012 tigrfam_recA protein 98.6 1.5E-07 3.3E-12 58.5 6.1 83 3-92 56-140 (321)
37 cd00983 recA RecA is a bacter 98.6 1.6E-07 3.5E-12 58.5 6.1 83 3-92 56-140 (325)
38 cd01133 F1-ATPase_beta F1 ATP 98.6 1.7E-07 3.7E-12 57.1 6.1 89 3-93 70-171 (274)
39 cd01394 radB RadB. The archaea 98.6 3.2E-07 6.8E-12 54.1 7.0 40 3-44 20-59 (218)
40 COG2256 MGS1 ATPase related to 98.6 1.7E-07 3.7E-12 59.4 6.1 26 5-32 51-76 (436)
41 PF00485 PRK: Phosphoribulokin 98.6 5.4E-07 1.2E-11 52.3 7.7 80 4-87 1-85 (194)
42 COG2909 MalT ATP-dependent tra 98.6 7.9E-07 1.7E-11 60.8 9.3 89 2-93 37-137 (894)
43 cd01120 RecA-like_NTPases RecA 98.6 9.8E-07 2.1E-11 49.1 8.4 40 4-45 1-40 (165)
44 PRK08233 hypothetical protein; 98.6 3.8E-07 8.3E-12 52.1 6.7 23 2-24 3-25 (182)
45 PRK09354 recA recombinase A; P 98.6 2.5E-07 5.5E-12 58.1 6.3 83 3-92 61-145 (349)
46 PRK05541 adenylylsulfate kinas 98.6 2E-07 4.3E-12 53.3 5.2 34 3-38 8-41 (176)
47 KOG2028 ATPase related to the 98.6 3.6E-07 7.7E-12 57.9 6.5 49 4-56 164-212 (554)
48 PRK12377 putative replication 98.6 5.6E-07 1.2E-11 54.3 7.1 35 4-40 103-137 (248)
49 cd01393 recA_like RecA is a b 98.6 1.5E-06 3.2E-11 51.4 8.8 88 3-93 20-122 (226)
50 PF05496 RuvB_N: Holliday junc 98.6 5.3E-07 1.2E-11 53.5 6.7 26 5-32 53-78 (233)
51 COG0572 Udk Uridine kinase [Nu 98.5 3.2E-07 6.9E-12 54.1 5.6 22 3-24 9-30 (218)
52 PF01695 IstB_IS21: IstB-like 98.5 2.8E-07 6.1E-12 53.0 5.2 35 3-39 48-82 (178)
53 PRK07952 DNA replication prote 98.5 7.9E-07 1.7E-11 53.5 7.0 34 4-39 101-134 (244)
54 PRK14088 dnaA chromosomal repl 98.5 5.7E-07 1.2E-11 58.2 6.7 26 4-31 132-157 (440)
55 PRK06762 hypothetical protein; 98.5 1E-07 2.2E-12 54.0 2.9 24 1-24 1-24 (166)
56 PF08423 Rad51: Rad51; InterP 98.5 4.5E-07 9.8E-12 54.9 5.7 90 3-93 39-141 (256)
57 cd03115 SRP The signal recogni 98.5 1.2E-06 2.6E-11 49.9 7.0 21 4-24 2-22 (173)
58 TIGR03499 FlhF flagellar biosy 98.5 2.3E-06 4.9E-11 52.5 8.5 84 3-92 195-279 (282)
59 PRK00080 ruvB Holliday junctio 98.5 9.3E-07 2E-11 55.2 6.9 22 3-24 52-73 (328)
60 TIGR00635 ruvB Holliday juncti 98.5 8.4E-07 1.8E-11 54.6 6.5 21 4-24 32-52 (305)
61 COG1484 DnaC DNA replication p 98.5 1.4E-06 3E-11 52.8 7.1 34 4-39 107-140 (254)
62 PRK08939 primosomal protein Dn 98.5 1E-06 2.3E-11 54.6 6.7 35 4-40 158-192 (306)
63 PTZ00301 uridine kinase; Provi 98.5 2.7E-07 5.9E-12 54.4 3.8 22 3-24 4-25 (210)
64 cd02025 PanK Pantothenate kina 98.5 2.4E-06 5.2E-11 50.7 7.8 21 4-24 1-21 (220)
65 TIGR03689 pup_AAA proteasome A 98.4 6.5E-07 1.4E-11 58.8 5.8 22 3-24 217-238 (512)
66 PRK08181 transposase; Validate 98.4 1.3E-06 2.9E-11 53.2 6.7 34 4-39 108-141 (269)
67 PRK06921 hypothetical protein; 98.4 1.2E-06 2.7E-11 53.3 6.5 36 3-40 118-154 (266)
68 PRK04301 radA DNA repair and r 98.4 1.6E-06 3.6E-11 53.9 6.9 55 3-58 103-161 (317)
69 COG1618 Predicted nucleotide k 98.4 2.8E-07 6.1E-12 52.0 3.1 22 3-24 6-27 (179)
70 PRK13342 recombination factor 98.4 1.3E-06 2.8E-11 56.1 6.4 21 4-24 38-58 (413)
71 PF00308 Bac_DnaA: Bacterial d 98.4 1.6E-06 3.4E-11 51.5 6.2 26 3-30 35-60 (219)
72 PRK00771 signal recognition pa 98.4 4.6E-06 1E-10 54.0 8.6 56 2-59 95-151 (437)
73 PRK12422 chromosomal replicati 98.4 2.4E-06 5.3E-11 55.4 7.4 34 4-39 143-176 (445)
74 PF13238 AAA_18: AAA domain; P 98.4 2.7E-07 5.9E-12 49.7 2.6 20 5-24 1-20 (129)
75 PRK04296 thymidine kinase; Pro 98.4 7.3E-07 1.6E-11 51.7 4.5 24 1-24 1-24 (190)
76 PLN03187 meiotic recombination 98.4 1E-06 2.2E-11 55.4 5.3 55 3-58 127-185 (344)
77 TIGR00362 DnaA chromosomal rep 98.4 1.8E-06 4E-11 55.3 6.4 26 4-31 138-163 (405)
78 PRK10867 signal recognition pa 98.4 3.9E-06 8.5E-11 54.2 7.9 23 2-24 100-122 (433)
79 TIGR02238 recomb_DMC1 meiotic 98.4 1.5E-06 3.3E-11 54.0 5.7 55 3-58 97-155 (313)
80 TIGR02236 recomb_radA DNA repa 98.4 3E-06 6.5E-11 52.5 7.0 55 3-58 96-154 (310)
81 cd02028 UMPK_like Uridine mono 98.4 1.3E-06 2.8E-11 50.3 5.1 21 4-24 1-21 (179)
82 cd02024 NRK1 Nicotinamide ribo 98.4 1.4E-06 2.9E-11 50.6 5.1 21 4-24 1-21 (187)
83 PRK14722 flhF flagellar biosyn 98.4 3.4E-06 7.4E-11 53.6 7.3 23 2-24 137-159 (374)
84 TIGR00959 ffh signal recogniti 98.4 3.4E-06 7.4E-11 54.5 7.3 23 2-24 99-121 (428)
85 PRK06835 DNA replication prote 98.4 3.5E-06 7.6E-11 52.8 7.2 35 3-39 184-218 (329)
86 PF13671 AAA_33: AAA domain; P 98.4 4.5E-07 9.9E-12 49.9 3.0 21 4-24 1-21 (143)
87 PRK11889 flhF flagellar biosyn 98.3 7E-06 1.5E-10 52.7 8.3 23 2-24 241-263 (436)
88 PRK05480 uridine/cytidine kina 98.3 4.5E-07 9.7E-12 53.2 2.8 22 3-24 7-28 (209)
89 TIGR02239 recomb_RAD51 DNA rep 98.3 2.4E-06 5.1E-11 53.2 6.0 55 3-58 97-155 (316)
90 PRK00149 dnaA chromosomal repl 98.3 3E-06 6.6E-11 55.0 6.7 28 3-32 149-176 (450)
91 PF00154 RecA: recA bacterial 98.3 5E-06 1.1E-10 51.9 7.3 84 2-92 53-138 (322)
92 PRK06526 transposase; Provisio 98.3 2.5E-06 5.5E-11 51.6 5.9 22 3-24 99-120 (254)
93 PRK04040 adenylate kinase; Pro 98.3 6.9E-07 1.5E-11 51.8 3.3 24 1-24 1-24 (188)
94 PF01583 APS_kinase: Adenylyls 98.3 8.4E-07 1.8E-11 50.0 3.5 35 2-38 2-36 (156)
95 PRK09183 transposase/IS protei 98.3 6.1E-06 1.3E-10 50.1 7.4 22 3-24 103-124 (259)
96 TIGR00235 udk uridine kinase. 98.3 4.9E-07 1.1E-11 53.0 2.6 22 3-24 7-28 (207)
97 PRK08972 fliI flagellum-specif 98.3 4.8E-06 1E-10 53.8 7.1 87 3-93 163-260 (444)
98 PRK04195 replication factor C 98.3 5.1E-06 1.1E-10 54.4 7.4 23 2-24 39-61 (482)
99 TIGR01242 26Sp45 26S proteasom 98.3 2.2E-06 4.7E-11 54.2 5.5 22 3-24 157-178 (364)
100 cd02019 NK Nucleoside/nucleoti 98.3 6.5E-07 1.4E-11 43.8 2.5 21 4-24 1-21 (69)
101 TIGR00064 ftsY signal recognit 98.3 1.1E-05 2.3E-10 49.4 8.3 22 3-24 73-94 (272)
102 COG0563 Adk Adenylate kinase a 98.3 1.6E-06 3.4E-11 49.9 4.4 22 4-25 2-23 (178)
103 PRK14721 flhF flagellar biosyn 98.3 1.4E-05 3.1E-10 51.5 9.0 23 2-24 191-213 (420)
104 cd00227 CPT Chloramphenicol (C 98.3 7.6E-07 1.7E-11 50.9 3.0 23 2-24 2-24 (175)
105 PRK09519 recA DNA recombinatio 98.3 4.1E-06 8.9E-11 57.4 6.8 83 3-92 61-145 (790)
106 cd01131 PilT Pilus retraction 98.3 1.3E-06 2.8E-11 51.0 4.0 22 3-24 2-23 (198)
107 PTZ00035 Rad51 protein; Provis 98.3 1E-05 2.3E-10 50.8 8.1 55 3-58 119-177 (337)
108 PRK10078 ribose 1,5-bisphospho 98.3 8.8E-07 1.9E-11 51.1 3.2 25 1-25 1-25 (186)
109 PF07728 AAA_5: AAA domain (dy 98.3 2.8E-06 6.2E-11 46.7 5.1 42 5-51 2-43 (139)
110 PRK05703 flhF flagellar biosyn 98.3 1.1E-05 2.3E-10 52.2 8.3 23 2-24 221-243 (424)
111 cd01122 GP4d_helicase GP4d_hel 98.3 2.6E-05 5.6E-10 47.4 9.6 49 3-55 31-80 (271)
112 COG4608 AppF ABC-type oligopep 98.3 9.8E-06 2.1E-10 49.2 7.6 22 3-24 40-61 (268)
113 cd02023 UMPK Uridine monophosp 98.3 6.7E-07 1.5E-11 52.0 2.5 21 4-24 1-21 (198)
114 PRK12724 flagellar biosynthesi 98.3 5.5E-06 1.2E-10 53.4 6.8 22 3-24 224-245 (432)
115 PRK06696 uridine kinase; Valid 98.3 1.8E-06 4E-11 51.2 4.4 22 3-24 23-44 (223)
116 PLN00020 ribulose bisphosphate 98.3 3.2E-06 7E-11 53.7 5.6 23 2-24 148-170 (413)
117 PRK08149 ATP synthase SpaL; Va 98.3 1.3E-05 2.7E-10 51.8 8.3 87 3-93 152-249 (428)
118 PRK12726 flagellar biosynthesi 98.3 1.7E-05 3.6E-10 50.7 8.7 23 2-24 206-228 (407)
119 PRK12723 flagellar biosynthesi 98.3 1.5E-05 3.2E-10 51.0 8.5 23 2-24 174-196 (388)
120 PRK06067 flagellar accessory p 98.3 1.4E-05 3.1E-10 47.6 8.1 47 3-53 26-72 (234)
121 PF08433 KTI12: Chromatin asso 98.3 3.7E-06 8.1E-11 51.3 5.5 22 3-24 2-23 (270)
122 PRK03839 putative kinase; Prov 98.2 7.8E-07 1.7E-11 51.0 2.5 21 4-24 2-22 (180)
123 PRK03992 proteasome-activating 98.2 5E-06 1.1E-10 53.1 6.3 22 3-24 166-187 (389)
124 TIGR03420 DnaA_homol_Hda DnaA 98.2 1.3E-06 2.8E-11 51.6 3.4 37 2-40 38-74 (226)
125 COG0468 RecA RecA/RadA recombi 98.2 9.7E-06 2.1E-10 49.7 7.2 85 3-93 61-149 (279)
126 PRK07594 type III secretion sy 98.2 1.9E-05 4.1E-10 51.1 8.8 87 3-93 156-253 (433)
127 COG0467 RAD55 RecA-superfamily 98.2 5E-06 1.1E-10 50.4 5.9 48 2-53 23-70 (260)
128 TIGR03263 guanyl_kin guanylate 98.2 1.2E-06 2.6E-11 50.1 3.1 23 2-24 1-23 (180)
129 PRK12727 flagellar biosynthesi 98.2 1.1E-05 2.3E-10 53.4 7.7 23 2-24 350-372 (559)
130 PRK06893 DNA replication initi 98.2 1.3E-06 2.9E-11 52.0 3.2 37 3-41 40-76 (229)
131 PTZ00454 26S protease regulato 98.2 1.1E-05 2.3E-10 51.8 7.4 22 3-24 180-201 (398)
132 TIGR02322 phosphon_PhnN phosph 98.2 1.2E-06 2.6E-11 50.1 2.9 22 3-24 2-23 (179)
133 PRK06547 hypothetical protein; 98.2 1.2E-06 2.5E-11 50.2 2.8 23 2-24 15-37 (172)
134 cd01136 ATPase_flagellum-secre 98.2 2E-05 4.2E-10 49.4 8.3 87 3-93 70-167 (326)
135 PRK06002 fliI flagellum-specif 98.2 1.8E-05 3.9E-10 51.4 8.3 88 3-93 166-262 (450)
136 cd01121 Sms Sms (bacterial rad 98.2 2.4E-05 5.1E-10 49.9 8.8 83 3-93 83-166 (372)
137 PRK14974 cell division protein 98.2 1.5E-05 3.4E-10 50.0 7.8 23 2-24 140-162 (336)
138 PLN03186 DNA repair protein RA 98.2 1.8E-05 3.9E-10 49.9 7.9 55 3-58 124-182 (342)
139 TIGR01360 aden_kin_iso1 adenyl 98.2 1.4E-06 3.1E-11 49.9 2.9 23 2-24 3-25 (188)
140 PRK08084 DNA replication initi 98.2 4.4E-06 9.5E-11 50.0 5.0 37 3-41 46-82 (235)
141 PRK00131 aroK shikimate kinase 98.2 1.5E-06 3.4E-11 49.2 2.9 23 2-24 4-26 (175)
142 KOG3347 Predicted nucleotide k 98.2 3E-06 6.6E-11 47.4 3.9 67 4-84 9-75 (176)
143 COG1419 FlhF Flagellar GTP-bin 98.2 2.5E-05 5.4E-10 50.0 8.3 82 2-89 203-286 (407)
144 PRK14087 dnaA chromosomal repl 98.2 8.3E-06 1.8E-10 53.1 6.4 21 4-24 143-163 (450)
145 TIGR01359 UMP_CMP_kin_fam UMP- 98.2 1.3E-06 2.9E-11 50.1 2.5 21 4-24 1-21 (183)
146 PRK00300 gmk guanylate kinase; 98.2 1.7E-06 3.7E-11 50.4 3.0 24 2-25 5-28 (205)
147 PF05673 DUF815: Protein of un 98.2 9.7E-06 2.1E-10 48.7 6.1 22 3-24 53-74 (249)
148 COG0194 Gmk Guanylate kinase [ 98.2 3E-06 6.6E-11 48.9 3.8 24 2-25 4-27 (191)
149 PRK13975 thymidylate kinase; P 98.2 1.7E-06 3.7E-11 50.1 2.9 24 1-24 1-24 (196)
150 PF00625 Guanylate_kin: Guanyl 98.2 3.2E-06 6.9E-11 48.7 4.0 34 2-37 2-35 (183)
151 cd02020 CMPK Cytidine monophos 98.2 1.5E-06 3.3E-11 47.9 2.5 21 4-24 1-21 (147)
152 PRK00625 shikimate kinase; Pro 98.2 1.5E-06 3.3E-11 49.8 2.5 21 4-24 2-22 (173)
153 PRK14723 flhF flagellar biosyn 98.2 3.4E-05 7.4E-10 53.0 9.2 23 2-24 185-207 (767)
154 PRK07667 uridine kinase; Provi 98.2 1.8E-06 3.9E-11 50.2 2.7 22 3-24 18-39 (193)
155 cd02021 GntK Gluconate kinase 98.2 1.8E-06 4E-11 48.0 2.6 21 4-24 1-21 (150)
156 TIGR00554 panK_bact pantothena 98.2 1.7E-05 3.7E-10 48.9 7.0 22 3-24 63-84 (290)
157 PF00006 ATP-synt_ab: ATP synt 98.2 7.6E-06 1.7E-10 48.5 5.3 50 3-56 16-66 (215)
158 PRK06217 hypothetical protein; 98.1 1.8E-06 3.8E-11 49.8 2.5 22 4-25 3-24 (183)
159 cd00071 GMPK Guanosine monopho 98.1 2.6E-06 5.6E-11 47.1 3.1 21 4-24 1-21 (137)
160 PRK06936 type III secretion sy 98.1 3E-05 6.5E-10 50.3 8.2 87 3-93 163-260 (439)
161 PRK09280 F0F1 ATP synthase sub 98.1 2.2E-05 4.7E-10 51.2 7.4 90 3-93 145-246 (463)
162 PRK11823 DNA repair protein Ra 98.1 3.8E-05 8.3E-10 50.0 8.6 83 3-93 81-164 (446)
163 PRK13947 shikimate kinase; Pro 98.1 2E-06 4.3E-11 48.8 2.5 21 4-24 3-23 (171)
164 TIGR01425 SRP54_euk signal rec 98.1 2.5E-05 5.5E-10 50.5 7.6 23 2-24 100-122 (429)
165 TIGR03498 FliI_clade3 flagella 98.1 3.4E-05 7.3E-10 49.8 8.2 87 3-93 141-238 (418)
166 PRK05642 DNA replication initi 98.1 6.7E-06 1.4E-10 49.2 4.8 36 3-40 46-81 (234)
167 PRK10416 signal recognition pa 98.1 4E-05 8.7E-10 47.9 8.3 22 3-24 115-136 (318)
168 TIGR03496 FliI_clade1 flagella 98.1 2.1E-05 4.5E-10 50.7 7.2 87 3-93 138-235 (411)
169 PRK08927 fliI flagellum-specif 98.1 2.5E-05 5.4E-10 50.7 7.5 87 3-93 159-256 (442)
170 cd01135 V_A-ATPase_B V/A-type 98.1 3.5E-05 7.6E-10 47.2 7.8 91 3-93 70-174 (276)
171 PRK12597 F0F1 ATP synthase sub 98.1 1.1E-05 2.4E-10 52.5 5.9 90 3-93 144-245 (461)
172 cd01672 TMPK Thymidine monopho 98.1 1.1E-05 2.3E-10 46.5 5.4 21 4-24 2-22 (200)
173 PRK09099 type III secretion sy 98.1 2.5E-05 5.3E-10 50.7 7.4 87 3-93 164-261 (441)
174 PRK05922 type III secretion sy 98.1 3.9E-05 8.5E-10 49.7 8.3 87 3-93 158-255 (434)
175 PRK12678 transcription termina 98.1 8.2E-06 1.8E-10 54.5 5.3 88 4-93 418-511 (672)
176 TIGR02655 circ_KaiC circadian 98.1 3.2E-05 6.8E-10 50.8 8.0 85 3-92 264-360 (484)
177 PF07726 AAA_3: ATPase family 98.1 2.8E-06 6.1E-11 46.4 2.7 27 5-33 2-28 (131)
178 PRK14530 adenylate kinase; Pro 98.1 3E-06 6.4E-11 50.0 3.0 23 2-24 3-25 (215)
179 PF00910 RNA_helicase: RNA hel 98.1 2.3E-06 5.1E-11 45.3 2.3 20 5-24 1-20 (107)
180 TIGR01241 FtsH_fam ATP-depende 98.1 2E-05 4.4E-10 51.8 7.0 21 4-24 90-110 (495)
181 PRK06761 hypothetical protein; 98.1 9.3E-06 2E-10 49.9 5.1 23 2-24 3-25 (282)
182 PF12775 AAA_7: P-loop contain 98.1 3.2E-06 6.9E-11 51.7 3.0 22 3-24 34-55 (272)
183 TIGR02880 cbbX_cfxQ probable R 98.1 2.3E-05 5E-10 48.2 6.8 21 4-24 60-80 (284)
184 cd03222 ABC_RNaseL_inhibitor T 98.1 4E-05 8.7E-10 44.1 7.4 22 3-24 26-47 (177)
185 PTZ00361 26 proteosome regulat 98.1 8.1E-06 1.8E-10 52.9 5.0 28 3-32 218-245 (438)
186 PRK06995 flhF flagellar biosyn 98.1 4.6E-05 1E-09 50.0 8.3 23 2-24 256-278 (484)
187 PRK09270 nucleoside triphospha 98.1 2.8E-05 6.1E-10 46.3 6.9 22 3-24 34-55 (229)
188 cd01132 F1_ATPase_alpha F1 ATP 98.1 2.7E-05 5.8E-10 47.7 6.8 87 3-93 70-169 (274)
189 PTZ00185 ATPase alpha subunit; 98.1 8.6E-05 1.9E-09 49.2 9.5 91 3-93 190-297 (574)
190 PRK10751 molybdopterin-guanine 98.1 3.8E-06 8.2E-11 48.2 3.0 23 2-24 6-28 (173)
191 COG1124 DppF ABC-type dipeptid 98.1 6.6E-06 1.4E-10 49.3 4.1 22 3-24 34-55 (252)
192 COG0003 ArsA Predicted ATPase 98.1 8.6E-06 1.9E-10 50.9 4.7 24 1-24 1-24 (322)
193 PHA00729 NTP-binding motif con 98.1 2.9E-06 6.3E-11 50.5 2.5 21 4-24 19-39 (226)
194 COG1428 Deoxynucleoside kinase 98.1 1.1E-05 2.4E-10 47.5 4.7 23 2-24 4-26 (216)
195 KOG0733 Nuclear AAA ATPase (VC 98.1 1.9E-05 4E-10 53.0 6.3 22 3-24 224-245 (802)
196 TIGR03575 selen_PSTK_euk L-ser 98.1 3.3E-05 7.1E-10 48.7 7.1 21 4-24 1-21 (340)
197 PRK00889 adenylylsulfate kinas 98.1 3.8E-06 8.2E-11 48.0 2.8 23 2-24 4-26 (175)
198 PRK06793 fliI flagellum-specif 98.1 4.1E-05 8.8E-10 49.6 7.6 87 3-93 157-254 (432)
199 PHA02530 pseT polynucleotide k 98.1 3.7E-06 8.1E-11 51.7 2.9 24 1-24 1-24 (300)
200 cd02029 PRK_like Phosphoribulo 98.1 3.5E-05 7.6E-10 47.1 6.9 21 4-24 1-21 (277)
201 cd03223 ABCD_peroxisomal_ALDP 98.1 7.9E-05 1.7E-09 42.3 8.1 23 3-25 28-50 (166)
202 PRK13949 shikimate kinase; Pro 98.1 3.6E-06 7.8E-11 48.1 2.6 21 4-24 3-23 (169)
203 KOG0735 AAA+-type ATPase [Post 98.1 1.9E-05 4E-10 53.8 6.2 39 3-42 432-470 (952)
204 TIGR01313 therm_gnt_kin carboh 98.1 3.3E-06 7.1E-11 47.6 2.3 20 5-24 1-20 (163)
205 PRK03731 aroL shikimate kinase 98.1 4.6E-06 9.9E-11 47.4 2.9 24 1-24 1-24 (171)
206 PRK15453 phosphoribulokinase; 98.0 7E-05 1.5E-09 46.1 8.1 22 3-24 6-27 (290)
207 PRK14737 gmk guanylate kinase; 98.0 6E-06 1.3E-10 47.8 3.4 23 2-24 4-26 (186)
208 PRK05688 fliI flagellum-specif 98.0 5.1E-05 1.1E-09 49.4 7.9 87 3-93 169-266 (451)
209 cd01124 KaiC KaiC is a circadi 98.0 6.9E-06 1.5E-10 47.1 3.6 45 4-52 1-45 (187)
210 smart00072 GuKc Guanylate kina 98.0 6.8E-06 1.5E-10 47.4 3.6 23 2-24 2-24 (184)
211 PRK05439 pantothenate kinase; 98.0 2.7E-05 5.9E-10 48.5 6.4 22 3-24 87-108 (311)
212 COG1936 Predicted nucleotide k 98.0 4.2E-06 9.1E-11 47.8 2.6 20 4-23 2-21 (180)
213 PRK13946 shikimate kinase; Pro 98.0 5E-06 1.1E-10 48.0 3.0 23 2-24 10-32 (184)
214 PTZ00088 adenylate kinase 1; P 98.0 6.7E-06 1.5E-10 49.1 3.6 20 5-24 9-28 (229)
215 cd00544 CobU Adenosylcobinamid 98.0 3.8E-05 8.2E-10 43.9 6.5 47 4-56 1-47 (169)
216 PRK14086 dnaA chromosomal repl 98.0 2.9E-05 6.2E-10 52.2 6.8 21 4-24 316-336 (617)
217 COG2255 RuvB Holliday junction 98.0 3.9E-06 8.5E-11 51.5 2.5 20 5-24 55-74 (332)
218 PRK13948 shikimate kinase; Pro 98.0 4.9E-06 1.1E-10 48.1 2.9 23 2-24 10-32 (182)
219 cd03214 ABC_Iron-Siderophores_ 98.0 7.9E-05 1.7E-09 42.8 7.8 22 3-24 26-47 (180)
220 COG1066 Sms Predicted ATP-depe 98.0 8E-05 1.7E-09 47.9 8.3 81 3-92 94-175 (456)
221 PRK03846 adenylylsulfate kinas 98.0 4.9E-06 1.1E-10 48.5 2.8 23 2-24 24-46 (198)
222 PRK12339 2-phosphoglycerate ki 98.0 5.1E-06 1.1E-10 48.6 2.8 23 2-24 3-25 (197)
223 PRK08903 DnaA regulatory inact 98.0 6.2E-06 1.3E-10 48.9 3.2 22 3-24 43-64 (227)
224 CHL00176 ftsH cell division pr 98.0 2.7E-05 5.9E-10 52.6 6.5 22 3-24 217-238 (638)
225 TIGR03877 thermo_KaiC_1 KaiC d 98.0 2.4E-05 5.2E-10 46.9 5.7 48 3-54 22-69 (237)
226 TIGR00763 lon ATP-dependent pr 98.0 1.6E-05 3.4E-10 54.9 5.4 22 3-24 348-369 (775)
227 PRK13768 GTPase; Provisional 98.0 9.8E-06 2.1E-10 49.0 4.0 24 1-24 1-24 (253)
228 TIGR03305 alt_F1F0_F1_bet alte 98.0 2.4E-05 5.1E-10 50.9 5.9 90 3-93 139-240 (449)
229 PRK00698 tmk thymidylate kinas 98.0 2.1E-05 4.5E-10 45.8 5.3 23 2-24 3-25 (205)
230 TIGR00041 DTMP_kinase thymidyl 98.0 2.3E-05 5.1E-10 45.3 5.5 22 3-24 4-25 (195)
231 COG3903 Predicted ATPase [Gene 98.0 7.7E-06 1.7E-10 52.2 3.6 81 3-93 15-96 (414)
232 TIGR00416 sms DNA repair prote 98.0 7.8E-05 1.7E-09 48.7 8.2 83 3-93 95-178 (454)
233 PRK14531 adenylate kinase; Pro 98.0 6.2E-06 1.3E-10 47.5 2.9 24 1-24 1-24 (183)
234 PRK05973 replicative DNA helic 98.0 2.8E-05 6.2E-10 46.7 5.8 48 3-54 65-112 (237)
235 COG1126 GlnQ ABC-type polar am 98.0 5.7E-06 1.2E-10 48.9 2.8 22 3-24 29-50 (240)
236 PRK14738 gmk guanylate kinase; 98.0 6.7E-06 1.5E-10 48.3 3.1 23 2-24 13-35 (206)
237 COG1763 MobB Molybdopterin-gua 98.0 4.5E-06 9.6E-11 47.3 2.2 24 1-24 1-24 (161)
238 COG4240 Predicted kinase [Gene 98.0 4.3E-05 9.2E-10 45.8 6.3 79 4-85 52-133 (300)
239 COG1102 Cmk Cytidylate kinase 98.0 4.5E-06 9.8E-11 47.3 2.2 22 4-25 2-23 (179)
240 cd00464 SK Shikimate kinase (S 98.0 5.3E-06 1.2E-10 46.1 2.5 20 5-24 2-21 (154)
241 PLN02796 D-glycerate 3-kinase 98.0 2.5E-05 5.3E-10 49.2 5.6 21 4-24 102-122 (347)
242 PRK08472 fliI flagellum-specif 98.0 6.6E-05 1.4E-09 48.7 7.7 22 3-24 158-179 (434)
243 PF03266 NTPase_1: NTPase; In 98.0 5.3E-06 1.2E-10 47.4 2.5 20 5-24 2-21 (168)
244 PF03205 MobB: Molybdopterin g 98.0 6.4E-06 1.4E-10 45.7 2.7 38 3-42 1-39 (140)
245 cd02027 APSK Adenosine 5'-phos 98.0 5.6E-06 1.2E-10 46.3 2.5 21 4-24 1-21 (149)
246 TIGR02881 spore_V_K stage V sp 98.0 5E-06 1.1E-10 50.4 2.5 21 4-24 44-64 (261)
247 TIGR03497 FliI_clade2 flagella 98.0 6.3E-05 1.4E-09 48.6 7.5 87 3-93 138-235 (413)
248 COG3267 ExeA Type II secretory 98.0 0.00014 3E-09 44.1 8.4 81 3-93 52-139 (269)
249 PF02374 ArsA_ATPase: Anion-tr 98.0 1.3E-05 2.7E-10 49.8 4.2 23 2-24 1-23 (305)
250 PLN03025 replication factor C 98.0 4.8E-05 1E-09 47.4 6.7 20 5-24 37-56 (319)
251 COG0466 Lon ATP-dependent Lon 98.0 4.4E-06 9.6E-11 56.5 2.2 28 3-32 351-378 (782)
252 PF08477 Miro: Miro-like prote 98.0 6.9E-06 1.5E-10 43.8 2.6 22 5-26 2-23 (119)
253 PLN02924 thymidylate kinase 98.0 3.4E-05 7.3E-10 45.9 5.7 23 2-24 16-38 (220)
254 PRK08099 bifunctional DNA-bind 98.0 6.8E-06 1.5E-10 52.7 3.0 24 1-24 218-241 (399)
255 PRK08533 flagellar accessory p 98.0 3.7E-05 8E-10 46.0 5.9 47 3-53 25-71 (230)
256 PRK14963 DNA polymerase III su 98.0 3E-06 6.4E-11 55.8 1.4 23 3-25 37-59 (504)
257 PF00005 ABC_tran: ABC transpo 98.0 8.7E-06 1.9E-10 44.5 3.0 24 2-25 11-34 (137)
258 TIGR01243 CDC48 AAA family ATP 98.0 2.1E-05 4.6E-10 53.9 5.5 22 3-24 213-234 (733)
259 TIGR02546 III_secr_ATP type II 98.0 0.00018 3.8E-09 46.7 9.3 87 3-93 146-243 (422)
260 PRK05800 cobU adenosylcobinami 98.0 0.00012 2.5E-09 42.0 7.6 22 3-24 2-23 (170)
261 PRK06620 hypothetical protein; 98.0 8.9E-06 1.9E-10 48.1 3.1 23 3-25 45-67 (214)
262 PRK04182 cytidylate kinase; Pr 98.0 7.5E-06 1.6E-10 46.6 2.7 21 4-24 2-22 (180)
263 cd00820 PEPCK_HprK Phosphoenol 98.0 8.6E-06 1.9E-10 43.2 2.7 21 3-23 16-36 (107)
264 PRK05057 aroK shikimate kinase 98.0 8.2E-06 1.8E-10 46.7 2.8 22 3-24 5-26 (172)
265 TIGR00602 rad24 checkpoint pro 98.0 9.7E-06 2.1E-10 54.7 3.5 22 3-24 111-132 (637)
266 PF13521 AAA_28: AAA domain; P 98.0 6E-06 1.3E-10 46.6 2.2 20 5-24 2-21 (163)
267 smart00763 AAA_PrkA PrkA AAA d 98.0 7E-06 1.5E-10 51.9 2.7 22 3-24 79-100 (361)
268 TIGR03574 selen_PSTK L-seryl-t 98.0 6.5E-06 1.4E-10 49.6 2.5 21 4-24 1-21 (249)
269 PRK08727 hypothetical protein; 98.0 1.1E-05 2.3E-10 48.3 3.3 36 4-41 43-78 (233)
270 PRK14527 adenylate kinase; Pro 97.9 8.4E-06 1.8E-10 47.2 2.8 23 2-24 6-28 (191)
271 TIGR01026 fliI_yscN ATPase Fli 97.9 7.6E-05 1.6E-09 48.6 7.3 22 3-24 164-185 (440)
272 TIGR02640 gas_vesic_GvpN gas v 97.9 2.7E-05 5.9E-10 47.3 5.0 22 3-24 22-43 (262)
273 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.9 0.00035 7.6E-09 38.8 9.0 23 3-25 27-49 (144)
274 PRK09825 idnK D-gluconate kina 97.9 9.9E-06 2.2E-10 46.5 2.9 22 3-24 4-25 (176)
275 PRK08356 hypothetical protein; 97.9 9.4E-06 2E-10 47.2 2.9 21 3-23 6-26 (195)
276 TIGR03878 thermo_KaiC_2 KaiC d 97.9 4E-05 8.7E-10 46.6 5.6 38 3-42 37-74 (259)
277 CHL00195 ycf46 Ycf46; Provisio 97.9 3.9E-05 8.4E-10 50.5 5.9 22 3-24 260-281 (489)
278 PRK06820 type III secretion sy 97.9 0.00037 8.1E-09 45.4 10.2 22 3-24 164-185 (440)
279 PLN02200 adenylate kinase fami 97.9 8.9E-06 1.9E-10 48.7 2.8 22 3-24 44-65 (234)
280 TIGR02173 cyt_kin_arch cytidyl 97.9 9.1E-06 2E-10 46.0 2.7 21 4-24 2-22 (171)
281 COG0703 AroK Shikimate kinase 97.9 1.1E-05 2.3E-10 46.2 2.9 29 2-32 2-30 (172)
282 COG0593 DnaA ATPase involved i 97.9 5E-05 1.1E-09 48.8 6.1 39 2-42 113-151 (408)
283 PF13086 AAA_11: AAA domain; P 97.9 1.7E-05 3.6E-10 46.6 3.8 50 4-55 19-75 (236)
284 PRK07721 fliI flagellum-specif 97.9 0.00011 2.3E-09 47.9 7.6 22 3-24 159-180 (438)
285 TIGR00678 holB DNA polymerase 97.9 0.00015 3.3E-09 41.8 7.6 23 2-24 14-36 (188)
286 COG0529 CysC Adenylylsulfate k 97.9 8.2E-06 1.8E-10 46.9 2.2 26 3-30 24-49 (197)
287 PRK07196 fliI flagellum-specif 97.9 9.1E-05 2E-09 48.1 7.1 22 3-24 156-177 (434)
288 PRK14532 adenylate kinase; Pro 97.9 9.9E-06 2.1E-10 46.7 2.6 20 5-24 3-22 (188)
289 TIGR00176 mobB molybdopterin-g 97.9 1E-05 2.2E-10 45.6 2.5 21 4-24 1-21 (155)
290 PRK14493 putative bifunctional 97.9 1.4E-05 3.1E-10 48.9 3.3 28 3-32 2-29 (274)
291 cd01428 ADK Adenylate kinase ( 97.9 9.9E-06 2.1E-10 46.7 2.5 20 5-24 2-21 (194)
292 cd03225 ABC_cobalt_CbiO_domain 97.9 1.3E-05 2.8E-10 47.0 3.0 23 3-25 28-50 (211)
293 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.9 1.3E-05 2.8E-10 47.2 3.0 23 3-25 31-53 (218)
294 KOG1969 DNA replication checkp 97.9 3.6E-05 7.7E-10 52.5 5.3 50 3-57 327-376 (877)
295 TIGR01041 ATP_syn_B_arch ATP s 97.9 6.6E-05 1.4E-09 49.0 6.4 91 3-93 142-246 (458)
296 TIGR02639 ClpA ATP-dependent C 97.9 5.9E-05 1.3E-09 51.8 6.5 20 5-24 206-225 (731)
297 PRK13185 chlL protochlorophyll 97.9 2.6E-05 5.6E-10 47.4 4.4 24 1-24 1-24 (270)
298 TIGR00960 3a0501s02 Type II (G 97.9 1.4E-05 3E-10 47.1 3.0 23 3-25 30-52 (216)
299 cd03238 ABC_UvrA The excision 97.9 1.5E-05 3.2E-10 45.9 3.1 22 3-24 22-43 (176)
300 TIGR01039 atpD ATP synthase, F 97.9 0.00015 3.2E-09 47.4 7.8 90 3-93 144-245 (461)
301 PRK09087 hypothetical protein; 97.9 1.4E-05 2.9E-10 47.7 2.9 22 3-24 45-66 (226)
302 PRK13233 nifH nitrogenase redu 97.9 1.3E-05 2.9E-10 48.8 3.0 24 1-24 1-24 (275)
303 PRK06731 flhF flagellar biosyn 97.9 0.00021 4.5E-09 43.8 8.1 22 3-24 76-97 (270)
304 cd01134 V_A-ATPase_A V/A-type 97.9 0.00078 1.7E-08 42.8 10.7 48 3-54 158-206 (369)
305 TIGR00150 HI0065_YjeE ATPase, 97.9 1.5E-05 3.3E-10 43.9 2.9 23 3-25 23-45 (133)
306 PF14516 AAA_35: AAA-like doma 97.9 0.00023 5E-09 44.8 8.4 89 2-93 31-135 (331)
307 COG1116 TauB ABC-type nitrate/ 97.9 1.4E-05 3.1E-10 48.0 2.8 22 3-24 30-51 (248)
308 COG1157 FliI Flagellar biosynt 97.9 0.00017 3.7E-09 46.4 7.7 86 3-92 164-260 (441)
309 TIGR01166 cbiO cobalt transpor 97.9 1.6E-05 3.5E-10 46.0 3.0 23 3-25 19-41 (190)
310 TIGR01243 CDC48 AAA family ATP 97.9 6.1E-05 1.3E-09 51.7 6.2 21 4-24 489-509 (733)
311 TIGR01040 V-ATPase_V1_B V-type 97.9 9.1E-05 2E-09 48.3 6.6 91 3-93 142-255 (466)
312 COG1120 FepC ABC-type cobalami 97.9 1.6E-05 3.5E-10 48.2 3.1 22 3-24 29-50 (258)
313 COG1100 GTPase SAR1 and relate 97.9 1.4E-05 3E-10 46.9 2.8 22 4-25 7-28 (219)
314 PF06745 KaiC: KaiC; InterPro 97.9 2.3E-05 5E-10 46.5 3.7 86 3-93 20-123 (226)
315 PF09848 DUF2075: Uncharacteri 97.9 9.8E-05 2.1E-09 46.7 6.7 39 3-43 2-42 (352)
316 cd03269 ABC_putative_ATPase Th 97.9 1.7E-05 3.6E-10 46.5 3.0 23 3-25 27-49 (210)
317 PF03029 ATP_bind_1: Conserved 97.9 1.8E-05 3.9E-10 47.6 3.2 19 7-25 1-19 (238)
318 cd02022 DPCK Dephospho-coenzym 97.9 1.3E-05 2.9E-10 46.0 2.6 21 4-24 1-21 (179)
319 PRK10865 protein disaggregatio 97.9 4.9E-05 1.1E-09 53.0 5.7 22 3-24 599-620 (857)
320 CHL00095 clpC Clp protease ATP 97.9 6.5E-05 1.4E-09 52.2 6.2 21 4-24 202-222 (821)
321 TIGR01287 nifH nitrogenase iro 97.8 2.1E-05 4.5E-10 48.0 3.5 22 3-24 1-22 (275)
322 cd02026 PRK Phosphoribulokinas 97.8 1.3E-05 2.9E-10 49.0 2.6 21 4-24 1-21 (273)
323 PRK13973 thymidylate kinase; P 97.8 7.1E-05 1.5E-09 44.2 5.6 22 3-24 4-25 (213)
324 cd03261 ABC_Org_Solvent_Resist 97.8 1.8E-05 3.8E-10 47.2 3.0 23 3-25 27-49 (235)
325 TIGR02673 FtsE cell division A 97.8 1.8E-05 3.9E-10 46.5 3.1 23 3-25 29-51 (214)
326 PRK04328 hypothetical protein; 97.8 7.4E-05 1.6E-09 45.1 5.7 39 3-43 24-62 (249)
327 COG1136 SalX ABC-type antimicr 97.8 1.7E-05 3.6E-10 47.3 2.9 22 3-24 32-53 (226)
328 PLN02348 phosphoribulokinase 97.8 1.4E-05 3.1E-10 51.0 2.7 22 3-24 50-71 (395)
329 TIGR02315 ABC_phnC phosphonate 97.8 1.8E-05 4E-10 47.3 3.0 22 3-24 29-50 (243)
330 cd03263 ABC_subfamily_A The AB 97.8 1.9E-05 4E-10 46.6 3.0 23 3-25 29-51 (220)
331 COG0237 CoaE Dephospho-CoA kin 97.8 1.8E-05 3.8E-10 46.5 2.9 24 1-24 1-24 (201)
332 PRK14490 putative bifunctional 97.8 1.9E-05 4.1E-10 50.2 3.2 28 2-31 5-32 (369)
333 cd03293 ABC_NrtD_SsuB_transpor 97.8 1.9E-05 4.1E-10 46.7 3.0 23 3-25 31-53 (220)
334 CHL00059 atpA ATP synthase CF1 97.8 0.00015 3.3E-09 47.6 7.3 87 3-93 142-241 (485)
335 cd03235 ABC_Metallic_Cations A 97.8 1.8E-05 3.8E-10 46.5 2.9 23 3-25 26-48 (213)
336 TIGR00017 cmk cytidylate kinas 97.8 2E-05 4.3E-10 46.7 3.1 24 1-24 1-24 (217)
337 CHL00060 atpB ATP synthase CF1 97.8 6.6E-05 1.4E-09 49.3 5.7 52 3-55 162-214 (494)
338 cd03256 ABC_PhnC_transporter A 97.8 1.9E-05 4.1E-10 47.1 3.0 23 3-25 28-50 (241)
339 PRK07960 fliI flagellum-specif 97.8 6.8E-05 1.5E-09 48.8 5.7 22 3-24 176-197 (455)
340 PF13245 AAA_19: Part of AAA d 97.8 2.5E-05 5.5E-10 39.0 3.0 22 2-23 10-31 (76)
341 cd03292 ABC_FtsE_transporter F 97.8 2E-05 4.3E-10 46.3 3.1 23 3-25 28-50 (214)
342 TIGR01420 pilT_fam pilus retra 97.8 2.9E-05 6.4E-10 48.9 4.0 23 2-24 122-144 (343)
343 KOG3308 Uncharacterized protei 97.8 4.8E-05 1E-09 44.6 4.5 21 4-24 6-26 (225)
344 cd02034 CooC The accessory pro 97.8 0.00019 4.1E-09 38.6 6.6 20 5-24 2-21 (116)
345 PRK14956 DNA polymerase III su 97.8 7.4E-05 1.6E-09 49.0 5.8 21 4-24 42-62 (484)
346 PLN03046 D-glycerate 3-kinase; 97.8 7.5E-05 1.6E-09 48.4 5.7 22 3-24 213-234 (460)
347 COG0464 SpoVK ATPases of the A 97.8 8.7E-05 1.9E-09 48.8 6.2 28 3-32 277-304 (494)
348 cd03259 ABC_Carb_Solutes_like 97.8 2.1E-05 4.5E-10 46.2 3.0 23 3-25 27-49 (213)
349 cd03260 ABC_PstB_phosphate_tra 97.8 2.1E-05 4.5E-10 46.6 3.1 22 3-24 27-48 (227)
350 cd04139 RalA_RalB RalA/RalB su 97.8 2E-05 4.4E-10 43.9 2.9 22 4-25 2-23 (164)
351 cd03296 ABC_CysA_sulfate_impor 97.8 2.1E-05 4.5E-10 47.1 3.0 23 3-25 29-51 (239)
352 PRK05896 DNA polymerase III su 97.8 4.8E-05 1E-09 51.1 4.9 22 3-24 39-60 (605)
353 PRK10463 hydrogenase nickel in 97.8 0.00033 7.1E-09 43.3 8.2 28 3-32 105-132 (290)
354 TIGR03864 PQQ_ABC_ATP ABC tran 97.8 2.1E-05 4.6E-10 46.9 3.1 23 3-25 28-50 (236)
355 cd03229 ABC_Class3 This class 97.8 2E-05 4.4E-10 45.2 2.9 22 3-24 27-48 (178)
356 cd00984 DnaB_C DnaB helicase C 97.8 8.3E-05 1.8E-09 44.4 5.6 48 3-54 14-62 (242)
357 cd03226 ABC_cobalt_CbiO_domain 97.8 2.2E-05 4.7E-10 45.9 3.0 23 3-25 27-49 (205)
358 PRK10584 putative ABC transpor 97.8 2.3E-05 4.9E-10 46.5 3.1 23 3-25 37-59 (228)
359 TIGR03881 KaiC_arch_4 KaiC dom 97.8 9.8E-05 2.1E-09 43.8 5.8 38 3-42 21-58 (229)
360 cd04163 Era Era subfamily. Er 97.8 2.2E-05 4.7E-10 43.6 2.9 24 2-25 3-26 (168)
361 PRK01184 hypothetical protein; 97.8 1.8E-05 3.8E-10 45.5 2.5 21 3-24 2-22 (184)
362 PRK13343 F0F1 ATP synthase sub 97.8 0.00014 3E-09 48.0 6.8 87 3-93 163-262 (502)
363 PRK15177 Vi polysaccharide exp 97.8 2.5E-05 5.3E-10 46.1 3.1 23 3-25 14-36 (213)
364 PF03193 DUF258: Protein of un 97.8 3.1E-05 6.7E-10 44.0 3.3 23 3-25 36-58 (161)
365 cd03265 ABC_DrrA DrrA is the A 97.8 2.4E-05 5.2E-10 46.2 3.1 23 3-25 27-49 (220)
366 PRK12338 hypothetical protein; 97.8 2E-05 4.3E-10 49.2 2.7 23 2-24 4-26 (319)
367 COG2607 Predicted ATPase (AAA+ 97.8 0.0001 2.2E-09 44.5 5.5 29 3-33 86-114 (287)
368 cd03258 ABC_MetN_methionine_tr 97.8 2.5E-05 5.4E-10 46.5 3.1 23 3-25 32-54 (233)
369 KOG2227 Pre-initiation complex 97.8 0.00032 7E-09 45.9 8.1 88 2-93 175-264 (529)
370 CHL00181 cbbX CbbX; Provisiona 97.8 1.8E-05 3.9E-10 48.7 2.5 21 4-24 61-81 (287)
371 PRK11629 lolD lipoprotein tran 97.8 2.5E-05 5.4E-10 46.5 3.0 23 3-25 36-58 (233)
372 PRK11248 tauB taurine transpor 97.8 2.5E-05 5.4E-10 47.3 3.1 23 3-25 28-50 (255)
373 cd03264 ABC_drug_resistance_li 97.8 2.1E-05 4.6E-10 46.1 2.7 21 4-24 27-47 (211)
374 cd03116 MobB Molybdenum is an 97.8 2.2E-05 4.8E-10 44.5 2.7 22 3-24 2-23 (159)
375 TIGR02211 LolD_lipo_ex lipopro 97.8 2.6E-05 5.6E-10 46.0 3.0 23 3-25 32-54 (221)
376 cd03237 ABC_RNaseL_inhibitor_d 97.8 2.5E-05 5.5E-10 47.1 3.0 23 3-25 26-48 (246)
377 COG0541 Ffh Signal recognition 97.8 0.00028 6.1E-09 45.7 7.8 57 2-61 100-158 (451)
378 PRK14529 adenylate kinase; Pro 97.8 0.00012 2.6E-09 43.7 5.8 20 5-24 3-22 (223)
379 TIGR03324 alt_F1F0_F1_al alter 97.8 0.00012 2.6E-09 48.2 6.2 87 3-93 163-262 (497)
380 TIGR02655 circ_KaiC circadian 97.8 7.6E-05 1.6E-09 49.1 5.4 49 2-53 21-69 (484)
381 PF01926 MMR_HSR1: 50S ribosom 97.8 2.8E-05 6E-10 41.4 2.9 21 5-25 2-22 (116)
382 PRK13341 recombination factor 97.8 1.9E-05 4.1E-10 54.1 2.7 27 4-32 54-80 (725)
383 PRK13541 cytochrome c biogenes 97.8 2.7E-05 5.8E-10 45.2 3.0 23 3-25 27-49 (195)
384 TIGR01351 adk adenylate kinase 97.8 2E-05 4.4E-10 46.3 2.5 20 5-24 2-21 (210)
385 TIGR03608 L_ocin_972_ABC putat 97.8 2.7E-05 5.9E-10 45.5 3.0 23 3-25 25-47 (206)
386 PF07724 AAA_2: AAA domain (Cd 97.8 3.8E-05 8.1E-10 44.0 3.5 40 4-45 5-45 (171)
387 cd03224 ABC_TM1139_LivF_branch 97.8 2.5E-05 5.4E-10 46.1 2.9 22 3-24 27-48 (222)
388 TIGR03880 KaiC_arch_3 KaiC dom 97.8 0.00012 2.6E-09 43.4 5.7 48 2-53 16-63 (224)
389 cd03257 ABC_NikE_OppD_transpor 97.8 2.7E-05 5.8E-10 46.1 3.0 23 3-25 32-54 (228)
390 cd03297 ABC_ModC_molybdenum_tr 97.8 2.5E-05 5.4E-10 45.9 2.8 23 3-25 24-46 (214)
391 PRK09302 circadian clock prote 97.8 0.00031 6.8E-09 46.4 8.1 86 3-93 274-371 (509)
392 cd04119 RJL RJL (RabJ-Like) su 97.8 2.5E-05 5.5E-10 43.6 2.7 21 5-25 3-23 (168)
393 PLN02318 phosphoribulokinase/u 97.8 2.3E-05 5E-10 52.6 2.8 22 3-24 66-87 (656)
394 cd04155 Arl3 Arl3 subfamily. 97.8 2.5E-05 5.5E-10 44.1 2.7 22 4-25 16-37 (173)
395 cd03278 ABC_SMC_barmotin Barmo 97.8 2.8E-05 6E-10 45.4 2.9 21 3-23 23-43 (197)
396 cd02040 NifH NifH gene encodes 97.8 5.9E-05 1.3E-09 45.7 4.4 22 3-24 2-23 (270)
397 cd04159 Arl10_like Arl10-like 97.8 2.6E-05 5.6E-10 43.0 2.6 21 5-25 2-22 (159)
398 cd02117 NifH_like This family 97.8 2.8E-05 6E-10 45.8 2.9 22 3-24 1-22 (212)
399 PRK14949 DNA polymerase III su 97.8 1.3E-05 2.8E-10 55.7 1.7 22 4-25 40-61 (944)
400 TIGR01184 ntrCD nitrate transp 97.8 3E-05 6.5E-10 46.2 3.1 23 3-25 12-34 (230)
401 cd01673 dNK Deoxyribonucleosid 97.8 2.3E-05 5E-10 45.3 2.5 21 4-24 1-21 (193)
402 COG1123 ATPase components of v 97.8 2.6E-05 5.5E-10 51.6 2.9 22 3-24 318-339 (539)
403 PRK13538 cytochrome c biogenes 97.8 3.1E-05 6.6E-10 45.3 3.0 23 3-25 28-50 (204)
404 TIGR02770 nickel_nikD nickel i 97.8 3E-05 6.4E-10 46.2 3.0 23 3-25 13-35 (230)
405 PRK10247 putative ABC transpor 97.8 3.1E-05 6.7E-10 46.0 3.1 23 3-25 34-56 (225)
406 cd03262 ABC_HisP_GlnQ_permease 97.8 3.1E-05 6.8E-10 45.4 3.1 23 3-25 27-49 (213)
407 smart00173 RAS Ras subfamily o 97.8 2.7E-05 5.9E-10 43.6 2.7 22 4-25 2-23 (164)
408 TIGR00455 apsK adenylylsulfate 97.8 3.4E-05 7.4E-10 44.4 3.1 23 2-24 18-40 (184)
409 cd03219 ABC_Mj1267_LivG_branch 97.8 2.9E-05 6.2E-10 46.3 2.9 23 3-25 27-49 (236)
410 TIGR00764 lon_rel lon-related 97.7 0.00011 2.4E-09 49.6 5.8 53 4-59 39-92 (608)
411 PRK04196 V-type ATP synthase s 97.7 0.00013 2.7E-09 47.8 5.9 90 3-93 144-248 (460)
412 cd03295 ABC_OpuCA_Osmoprotecti 97.7 3.2E-05 6.9E-10 46.3 3.1 23 3-25 28-50 (242)
413 PRK05416 glmZ(sRNA)-inactivati 97.7 2.9E-05 6.3E-10 47.9 2.9 22 2-23 6-27 (288)
414 cd03218 ABC_YhbG The ABC trans 97.7 3.2E-05 6.9E-10 46.0 3.0 23 3-25 27-49 (232)
415 PRK10908 cell division protein 97.7 3.3E-05 7.1E-10 45.7 3.1 23 3-25 29-51 (222)
416 cd01862 Rab7 Rab7 subfamily. 97.7 3E-05 6.5E-10 43.6 2.8 21 5-25 3-23 (172)
417 PRK00279 adk adenylate kinase; 97.7 2.5E-05 5.4E-10 46.1 2.5 21 4-24 2-22 (215)
418 TIGR03345 VI_ClpV1 type VI sec 97.7 8.6E-05 1.9E-09 51.8 5.4 20 5-24 211-230 (852)
419 cd03301 ABC_MalK_N The N-termi 97.7 3.3E-05 7.2E-10 45.3 3.1 23 3-25 27-49 (213)
420 PRK11124 artP arginine transpo 97.7 3.3E-05 7.1E-10 46.3 3.1 23 3-25 29-51 (242)
421 PLN02165 adenylate isopentenyl 97.7 2.9E-05 6.3E-10 48.7 2.9 22 3-24 44-65 (334)
422 TIGR00390 hslU ATP-dependent p 97.7 9.4E-05 2E-09 47.9 5.2 28 3-32 48-75 (441)
423 COG4619 ABC-type uncharacteriz 97.7 5.6E-05 1.2E-09 43.5 3.7 21 4-24 31-51 (223)
424 COG1222 RPT1 ATP-dependent 26S 97.7 2.4E-05 5.1E-10 49.4 2.4 21 5-25 188-208 (406)
425 PRK02496 adk adenylate kinase; 97.7 2.6E-05 5.7E-10 44.8 2.5 20 5-24 4-23 (184)
426 TIGR03345 VI_ClpV1 type VI sec 97.7 0.0001 2.2E-09 51.4 5.7 21 4-24 598-618 (852)
427 cd03268 ABC_BcrA_bacitracin_re 97.7 3.4E-05 7.5E-10 45.1 3.0 23 3-25 27-49 (208)
428 PRK14955 DNA polymerase III su 97.7 0.00024 5.1E-09 45.7 7.0 21 4-24 40-60 (397)
429 PRK14250 phosphate ABC transpo 97.7 3.4E-05 7.4E-10 46.2 3.1 23 3-25 30-52 (241)
430 PRK00440 rfc replication facto 97.7 0.00026 5.7E-09 43.8 7.0 21 4-24 40-60 (319)
431 TIGR02639 ClpA ATP-dependent C 97.7 0.00013 2.9E-09 50.1 6.2 21 4-24 486-506 (731)
432 TIGR01978 sufC FeS assembly AT 97.7 3.4E-05 7.3E-10 46.1 3.0 23 3-25 27-49 (243)
433 PRK13539 cytochrome c biogenes 97.7 3.6E-05 7.9E-10 45.1 3.1 23 3-25 29-51 (207)
434 PRK14247 phosphate ABC transpo 97.7 3.5E-05 7.5E-10 46.4 3.0 23 3-25 30-52 (250)
435 cd03266 ABC_NatA_sodium_export 97.7 3.5E-05 7.7E-10 45.4 3.0 23 3-25 32-54 (218)
436 PRK09281 F0F1 ATP synthase sub 97.7 0.00023 5E-09 47.0 7.0 87 3-93 163-262 (502)
437 cd01130 VirB11-like_ATPase Typ 97.7 3.7E-05 8.1E-10 44.4 3.0 22 3-24 26-47 (186)
438 COG3842 PotA ABC-type spermidi 97.7 3.1E-05 6.7E-10 48.9 2.8 23 3-25 32-54 (352)
439 cd00876 Ras Ras family. The R 97.7 3.3E-05 7.3E-10 42.8 2.7 21 5-25 2-22 (160)
440 PRK11247 ssuB aliphatic sulfon 97.7 3.7E-05 8E-10 46.6 3.1 23 3-25 39-61 (257)
441 PF10662 PduV-EutP: Ethanolami 97.7 7.8E-05 1.7E-09 41.5 4.1 22 4-25 3-24 (143)
442 cd03232 ABC_PDR_domain2 The pl 97.7 3.7E-05 8.1E-10 44.6 3.0 22 3-24 34-55 (192)
443 PRK09493 glnQ glutamine ABC tr 97.7 3.8E-05 8.2E-10 45.9 3.0 23 3-25 28-50 (240)
444 TIGR00073 hypB hydrogenase acc 97.7 3.1E-05 6.8E-10 45.4 2.6 22 3-24 23-44 (207)
445 COG3638 ABC-type phosphate/pho 97.7 0.00014 2.9E-09 43.8 5.2 22 3-24 31-52 (258)
446 PRK14242 phosphate transporter 97.7 3.8E-05 8.3E-10 46.2 3.1 22 3-24 33-54 (253)
447 cd01983 Fer4_NifH The Fer4_Nif 97.7 3.4E-05 7.4E-10 39.3 2.5 21 4-24 1-21 (99)
448 COG4639 Predicted kinase [Gene 97.7 9.1E-05 2E-09 41.8 4.3 24 1-24 1-24 (168)
449 KOG1532 GTPase XAB1, interacts 97.7 3.2E-05 6.9E-10 47.5 2.7 30 3-34 20-49 (366)
450 TIGR00101 ureG urease accessor 97.7 5.4E-05 1.2E-09 44.3 3.6 21 4-24 3-23 (199)
451 cd04138 H_N_K_Ras_like H-Ras/N 97.7 3.5E-05 7.5E-10 42.8 2.7 21 5-25 4-24 (162)
452 PRK07429 phosphoribulokinase; 97.7 3.5E-05 7.5E-10 48.4 2.9 22 3-24 9-30 (327)
453 COG2842 Uncharacterized ATPase 97.7 0.00039 8.4E-09 43.0 7.2 79 2-93 94-173 (297)
454 cd03252 ABCC_Hemolysin The ABC 97.7 4E-05 8.7E-10 45.7 3.0 23 3-25 29-51 (237)
455 cd03246 ABCC_Protease_Secretio 97.7 4.4E-05 9.6E-10 43.6 3.1 23 3-25 29-51 (173)
456 PRK13645 cbiO cobalt transport 97.7 3.9E-05 8.4E-10 47.2 3.0 23 3-25 38-60 (289)
457 COG3640 CooC CO dehydrogenase 97.7 8.5E-05 1.8E-09 44.5 4.3 21 4-24 2-22 (255)
458 cd03273 ABC_SMC2_euk Eukaryoti 97.7 4E-05 8.7E-10 46.2 3.0 22 2-23 25-46 (251)
459 TIGR02324 CP_lyasePhnL phospho 97.7 4.1E-05 8.9E-10 45.3 3.0 23 3-25 35-57 (224)
460 PRK13695 putative NTPase; Prov 97.7 3.3E-05 7.2E-10 44.1 2.5 21 4-24 2-22 (174)
461 COG1121 ZnuC ABC-type Mn/Zn tr 97.7 4.1E-05 8.9E-10 46.3 3.0 22 3-24 31-52 (254)
462 PF03308 ArgK: ArgK protein; 97.7 2.7E-05 5.8E-10 47.3 2.2 23 2-24 29-51 (266)
463 TIGR00972 3a0107s01c2 phosphat 97.7 4.2E-05 9E-10 46.0 3.1 22 3-24 28-49 (247)
464 PRK11264 putative amino-acid A 97.7 4.2E-05 9.1E-10 46.0 3.1 23 3-25 30-52 (250)
465 PRK13230 nitrogenase reductase 97.7 5.1E-05 1.1E-09 46.4 3.5 22 3-24 2-23 (279)
466 PRK14950 DNA polymerase III su 97.7 0.0001 2.3E-09 49.5 5.2 21 4-24 40-60 (585)
467 TIGR01618 phage_P_loop phage n 97.7 3.4E-05 7.4E-10 45.9 2.6 22 3-24 13-34 (220)
468 PRK10575 iron-hydroxamate tran 97.7 3.9E-05 8.4E-10 46.6 2.9 23 3-25 38-60 (265)
469 TIGR01277 thiQ thiamine ABC tr 97.7 4.3E-05 9.3E-10 45.0 3.0 23 3-25 25-47 (213)
470 PRK14528 adenylate kinase; Pro 97.7 3.7E-05 8E-10 44.5 2.7 21 4-24 3-23 (186)
471 PRK10619 histidine/lysine/argi 97.7 4.2E-05 9.1E-10 46.2 3.0 23 3-25 32-54 (257)
472 PRK05201 hslU ATP-dependent pr 97.7 8.4E-05 1.8E-09 48.1 4.5 22 3-24 51-72 (443)
473 PRK10865 protein disaggregatio 97.7 0.00015 3.2E-09 50.8 5.9 21 4-24 201-221 (857)
474 cd03247 ABCC_cytochrome_bd The 97.7 4.6E-05 1E-09 43.7 3.1 23 3-25 29-51 (178)
475 PRK10895 lipopolysaccharide AB 97.7 4.3E-05 9.3E-10 45.7 3.0 23 3-25 30-52 (241)
476 TIGR01526 nadR_NMN_Atrans nico 97.7 4E-05 8.7E-10 48.0 3.0 23 2-24 162-184 (325)
477 PRK11022 dppD dipeptide transp 97.7 4.2E-05 9E-10 47.9 3.1 23 3-25 34-56 (326)
478 smart00175 RAB Rab subfamily o 97.7 4.1E-05 8.8E-10 42.7 2.8 21 5-25 3-23 (164)
479 PRK14241 phosphate transporter 97.7 4.3E-05 9.3E-10 46.2 3.0 22 3-24 31-52 (258)
480 cd03267 ABC_NatA_like Similar 97.7 4.4E-05 9.6E-10 45.6 3.0 23 3-25 48-70 (236)
481 PRK09435 membrane ATPase/prote 97.7 8.3E-05 1.8E-09 46.8 4.3 23 2-24 56-78 (332)
482 TIGR00231 small_GTP small GTP- 97.7 4.3E-05 9.2E-10 41.9 2.8 23 4-26 3-25 (161)
483 cd03245 ABCC_bacteriocin_expor 97.7 4.6E-05 1E-09 44.9 3.1 23 3-25 31-53 (220)
484 KOG2004 Mitochondrial ATP-depe 97.7 2.3E-05 5E-10 53.4 1.9 29 2-32 438-466 (906)
485 cd03114 ArgK-like The function 97.7 9.9E-05 2.2E-09 41.3 4.2 21 4-24 1-21 (148)
486 TIGR03410 urea_trans_UrtE urea 97.7 4.5E-05 9.8E-10 45.3 3.0 23 3-25 27-49 (230)
487 TIGR00962 atpA proton transloc 97.7 0.00035 7.5E-09 46.2 7.2 87 3-93 162-261 (501)
488 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.7 4.6E-05 1E-09 45.5 3.0 23 3-25 30-52 (238)
489 PRK10787 DNA-binding ATP-depen 97.7 0.00024 5.2E-09 49.3 6.7 22 3-24 350-371 (784)
490 COG0125 Tmk Thymidylate kinase 97.7 0.00018 4E-09 42.5 5.4 51 2-54 3-53 (208)
491 PRK09544 znuC high-affinity zi 97.7 4.7E-05 1E-09 46.0 3.1 23 3-25 31-53 (251)
492 cd04113 Rab4 Rab4 subfamily. 97.7 4.3E-05 9.3E-10 42.7 2.7 21 5-25 3-23 (161)
493 TIGR01188 drrA daunorubicin re 97.7 4.7E-05 1E-09 47.1 3.1 23 3-25 20-42 (302)
494 PRK13540 cytochrome c biogenes 97.7 4.9E-05 1.1E-09 44.3 3.1 23 3-25 28-50 (200)
495 PRK13649 cbiO cobalt transport 97.7 4.5E-05 9.8E-10 46.7 3.0 23 3-25 34-56 (280)
496 PRK10744 pstB phosphate transp 97.7 4.7E-05 1E-09 46.1 3.1 22 3-24 40-61 (260)
497 cd03230 ABC_DR_subfamily_A Thi 97.7 5.1E-05 1.1E-09 43.3 3.0 23 3-25 27-49 (173)
498 PRK14267 phosphate ABC transpo 97.7 4.7E-05 1E-09 45.9 3.0 23 3-25 31-53 (253)
499 PRK14961 DNA polymerase III su 97.7 4E-05 8.7E-10 48.6 2.8 22 3-24 39-60 (363)
500 cd01876 YihA_EngB The YihA (En 97.7 4E-05 8.8E-10 42.6 2.6 20 5-24 2-21 (170)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.90 E-value=2.1e-23 Score=140.73 Aligned_cols=89 Identities=25% Similarity=0.325 Sum_probs=78.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcc-cccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHHHHHHh
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNH-VKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY 81 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~-~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 81 (93)
++++|+||||+||||||++++++.. +.++|+..+|+++|+.++...++.+|+..++....... +.+.+.+...|.+.
T Consensus 180 ~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~--~~~~~~~~~~i~~~ 257 (889)
T KOG4658|consen 180 GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWE--DKEEDELASKLLNL 257 (889)
T ss_pred CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccc--hhhHHHHHHHHHHH
Confidence 5899999999999999999999876 89999999999999999999999999999875333210 03457899999999
Q ss_pred cCCCeEEEEeeC
Q 037564 82 LTNKKYFIVLDD 93 (93)
Q Consensus 82 L~~kr~LlVlDD 93 (93)
|+.|||+|||||
T Consensus 258 L~~krfllvLDD 269 (889)
T KOG4658|consen 258 LEGKRFLLVLDD 269 (889)
T ss_pred hccCceEEEEec
Confidence 999999999998
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.89 E-value=5.2e-23 Score=124.62 Aligned_cols=91 Identities=23% Similarity=0.364 Sum_probs=77.4
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHHHHHHh
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY 81 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 81 (93)
.++|+|+||+|+||||||.+++++..++.+|+.++|+.+++..+...++.+|+.++....... ....+.+.+...+.+.
T Consensus 19 ~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~l~~~ 97 (287)
T PF00931_consen 19 VRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSI-SDPKDIEELQDQLREL 97 (287)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STS-SCCSSHHHHHHHHHHH
T ss_pred eEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccchhh
Confidence 478999999999999999999996558899999999999998888999999999998653211 0016788899999999
Q ss_pred cCCCeEEEEeeC
Q 037564 82 LTNKKYFIVLDD 93 (93)
Q Consensus 82 L~~kr~LlVlDD 93 (93)
|.++++||||||
T Consensus 98 L~~~~~LlVlDd 109 (287)
T PF00931_consen 98 LKDKRCLLVLDD 109 (287)
T ss_dssp HCCTSEEEEEEE
T ss_pred hccccceeeeee
Confidence 999999999997
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.64 E-value=1.4e-15 Score=105.88 Aligned_cols=82 Identities=17% Similarity=0.299 Sum_probs=56.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEe---CCC-----------CC-HHHHHHHHHHhhCCCCCCcccc
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRV---SIS-----------YD-FRMVLDDIIKSVMPPSRVSVII 67 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~---~~~-----------~~-~~~ll~~il~~l~~~~~~~~~~ 67 (93)
++|+||||+|+||||||+.+|+ ++...|+..+|+.. ... ++ ...++.+++.++........
T Consensus 208 ~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~-- 283 (1153)
T PLN03210 208 RMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKI-- 283 (1153)
T ss_pred EEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCccc--
Confidence 6899999999999999999999 78889998887642 111 01 12345555655542221110
Q ss_pred CCCHHHHHHHHHHhcCCCeEEEEeeC
Q 037564 68 GEDYQLKKSILRDYLTNKKYFIVLDD 93 (93)
Q Consensus 68 ~~~~~~l~~~l~~~L~~kr~LlVlDD 93 (93)
.. ...+++.|.++|+||||||
T Consensus 284 -~~----~~~~~~~L~~krvLLVLDd 304 (1153)
T PLN03210 284 -YH----LGAMEERLKHRKVLIFIDD 304 (1153)
T ss_pred -CC----HHHHHHHHhCCeEEEEEeC
Confidence 11 2467788999999999998
No 4
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=99.48 E-value=1e-13 Score=75.50 Aligned_cols=86 Identities=16% Similarity=0.157 Sum_probs=62.2
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccC-----CCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHH
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFY-----FDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKS 76 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~-----f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~ 76 (93)
.+.+.|+|++|+|||++++.+.+ ..... -...+|+.+....+...+.+.+++.+..+.... .+.+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~----~~~~~l~~ 77 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLAR--QLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSR----QTSDELRS 77 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHH--HHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSST----S-HHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHH--HhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccccc----CCHHHHHH
Confidence 46789999999999999999998 33321 234568888877799999999999998654431 46777778
Q ss_pred HHHHhcCCC-eEEEEeeC
Q 037564 77 ILRDYLTNK-KYFIVLDD 93 (93)
Q Consensus 77 ~l~~~L~~k-r~LlVlDD 93 (93)
.+.+.+... ..+||+||
T Consensus 78 ~~~~~l~~~~~~~lviDe 95 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDE 95 (131)
T ss_dssp HHHHHHHHCTEEEEEEET
T ss_pred HHHHHHHhcCCeEEEEeC
Confidence 888888554 45999997
No 5
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.46 E-value=4e-13 Score=80.51 Aligned_cols=90 Identities=11% Similarity=-0.022 Sum_probs=58.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCC--CCHHHHHHHHHHhhCCCCCCcc-ccC-CCHHHHHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSIS--YDFRMVLDDIIKSVMPPSRVSV-IIG-EDYQLKKSIL 78 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~ll~~il~~l~~~~~~~~-~~~-~~~~~l~~~l 78 (93)
..++|.|++|+|||||++.++++.... +|+..+|+++.+. .+..++++.+...+-....... ... .-........
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a 95 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKA 95 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 468899999999999999999954333 7999999987665 7889999998433221111100 000 1111222233
Q ss_pred HHh-cCCCeEEEEeeC
Q 037564 79 RDY-LTNKKYFIVLDD 93 (93)
Q Consensus 79 ~~~-L~~kr~LlVlDD 93 (93)
... -+++++++++|+
T Consensus 96 ~~~~~~G~~vll~iDe 111 (249)
T cd01128 96 KRLVEHGKDVVILLDS 111 (249)
T ss_pred HHHHHCCCCEEEEEEC
Confidence 322 257899999996
No 6
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.36 E-value=2.9e-11 Score=72.92 Aligned_cols=83 Identities=16% Similarity=0.103 Sum_probs=52.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHHHHH---
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILR--- 79 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~--- 79 (93)
+.+.|+|++|+||||+++.+++. ....--...|+ .....+..+++..++..++.+... .+...+...+.
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~--l~~~~~~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-----~~~~~~~~~l~~~l 115 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKR--LDQERVVAAKL-VNTRVDAEDLLRMVAADFGLETEG-----RDKAALLRELEDFL 115 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHh--cCCCCeEEeee-eCCCCCHHHHHHHHHHHcCCCCCC-----CCHHHHHHHHHHHH
Confidence 47899999999999999999984 32110112232 233456778888898887654221 22333333333
Q ss_pred -Hhc-CCCeEEEEeeC
Q 037564 80 -DYL-TNKKYFIVLDD 93 (93)
Q Consensus 80 -~~L-~~kr~LlVlDD 93 (93)
... .++++++|+||
T Consensus 116 ~~~~~~~~~~vliiDe 131 (269)
T TIGR03015 116 IEQFAAGKRALLVVDE 131 (269)
T ss_pred HHHHhCCCCeEEEEEC
Confidence 322 67788999997
No 7
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.34 E-value=2.7e-11 Score=76.58 Aligned_cols=87 Identities=14% Similarity=0.196 Sum_probs=62.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCC--CeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHHHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYF--DCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILRD 80 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f--~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 80 (93)
+.+.|+|++|+|||++++.+++ +..... -..+++++....+...++..+++++....... ...+.+++.+.+.+
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~--~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~~~ 131 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFE--ELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPS--SGLSFDELFDKIAE 131 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCC--CCCCHHHHHHHHHH
Confidence 4578999999999999999998 443322 23556666677788889999999987422111 01466777788888
Q ss_pred hcC--CCeEEEEeeC
Q 037564 81 YLT--NKKYFIVLDD 93 (93)
Q Consensus 81 ~L~--~kr~LlVlDD 93 (93)
.+. ++..+||||+
T Consensus 132 ~l~~~~~~~viviDE 146 (394)
T PRK00411 132 YLDERDRVLIVALDD 146 (394)
T ss_pred HHHhcCCEEEEEECC
Confidence 774 3568889996
No 8
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=99.31 E-value=4.6e-12 Score=79.80 Aligned_cols=90 Identities=12% Similarity=0.024 Sum_probs=56.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCC--CHHHHHHHHHHhhCCCCCCcc-ccC-CCHHHHHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISY--DFRMVLDDIIKSVMPPSRVSV-IIG-EDYQLKKSIL 78 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~--~~~~ll~~il~~l~~~~~~~~-~~~-~~~~~l~~~l 78 (93)
.-..|+|++|+||||||+.++++.... +|+..+|+.+.+.+ ...++++++...+-....... ... .........-
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 356899999999999999999953333 79999999988776 677788777632221111110 000 1111111222
Q ss_pred HHh-cCCCeEEEEeeC
Q 037564 79 RDY-LTNKKYFIVLDD 93 (93)
Q Consensus 79 ~~~-L~~kr~LlVlDD 93 (93)
+.. ..+++++|++|+
T Consensus 249 e~~~e~G~dVlL~iDs 264 (416)
T PRK09376 249 KRLVEHGKDVVILLDS 264 (416)
T ss_pred HHHHHcCCCEEEEEEC
Confidence 222 267999999996
No 9
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.31 E-value=4.5e-11 Score=74.90 Aligned_cols=86 Identities=19% Similarity=0.113 Sum_probs=59.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCC------CeeEEEEeCCCCCHHHHHHHHHHhhCC---CCCCccccCCCHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYF------DCHAWVRVSISYDFRMVLDDIIKSVMP---PSRVSVIIGEDYQL 73 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f------~~~~wv~~~~~~~~~~ll~~il~~l~~---~~~~~~~~~~~~~~ 73 (93)
+.+.|+|++|+|||++++.+++ ++.... -..+|+++....+...++..+++++.. ..+.. ..+..+
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~~--~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~---~~~~~~ 115 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVMK--ELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTT---GLSTSE 115 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHHH--HHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCC---CCCHHH
Confidence 5688999999999999999998 332211 134677777777788899999998842 11111 034556
Q ss_pred HHHHHHHhcC--CCeEEEEeeC
Q 037564 74 KKSILRDYLT--NKKYFIVLDD 93 (93)
Q Consensus 74 l~~~l~~~L~--~kr~LlVlDD 93 (93)
+...+.+.+. +++++||||+
T Consensus 116 ~~~~l~~~l~~~~~~~vlvIDE 137 (365)
T TIGR02928 116 VFRRLYKELNERGDSLIIVLDE 137 (365)
T ss_pred HHHHHHHHHHhcCCeEEEEECc
Confidence 6666666663 5678899996
No 10
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=99.24 E-value=5.4e-11 Score=75.23 Aligned_cols=90 Identities=10% Similarity=-0.036 Sum_probs=57.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCC--CCHHHHHHHHHHhhCCCCCCccc-cC-CCHHHHHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSIS--YDFRMVLDDIIKSVMPPSRVSVI-IG-EDYQLKKSIL 78 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~--~~~~~ll~~il~~l~~~~~~~~~-~~-~~~~~l~~~l 78 (93)
..++|+|++|+|||||++.+++.... .+|+..+|+.+.+. .+..++++.++..+-........ .. .-.....+..
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~A 247 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKA 247 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHH
Confidence 46889999999999999999994322 26998899988755 78899999986544322211110 00 0111222222
Q ss_pred HHh-cCCCeEEEEeeC
Q 037564 79 RDY-LTNKKYFIVLDD 93 (93)
Q Consensus 79 ~~~-L~~kr~LlVlDD 93 (93)
... -++++++|++|+
T Consensus 248 e~~~~~GkdVVLlIDE 263 (415)
T TIGR00767 248 KRLVEHKKDVVILLDS 263 (415)
T ss_pred HHHHHcCCCeEEEEEC
Confidence 222 267899999995
No 11
>PF05729 NACHT: NACHT domain
Probab=99.16 E-value=2.4e-10 Score=64.14 Aligned_cols=81 Identities=14% Similarity=0.111 Sum_probs=45.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccC----CCeeEEEEeCCCCCHH---HHHHHHHHhhCCCCCCccccCCCHHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFY----FDCHAWVRVSISYDFR---MVLDDIIKSVMPPSRVSVIIGEDYQLKK 75 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~---~ll~~il~~l~~~~~~~~~~~~~~~~l~ 75 (93)
|++.|.|.+|+||||+++.++........ +...+|++........ .+...+..+..... .....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-------~~~~~-- 71 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI-------APIEE-- 71 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch-------hhhHH--
Confidence 68999999999999999998874222222 3345566554433222 33333333333111 11112
Q ss_pred HHHHHhc-CCCeEEEEeeC
Q 037564 76 SILRDYL-TNKKYFIVLDD 93 (93)
Q Consensus 76 ~~l~~~L-~~kr~LlVlDD 93 (93)
.+...+ ..+++++|+|+
T Consensus 72 -~~~~~~~~~~~~llilDg 89 (166)
T PF05729_consen 72 -LLQELLEKNKRVLLILDG 89 (166)
T ss_pred -HHHHHHHcCCceEEEEec
Confidence 222222 56899999995
No 12
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.7e-09 Score=67.30 Aligned_cols=83 Identities=16% Similarity=0.082 Sum_probs=65.0
Q ss_pred eeEEcCCCCcHHHHHHHHhcCcccccCCC-e-eEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHHHHHHhc
Q 037564 5 KPILDSSSFDKTAFTADTYNNNHVKFYFD-C-HAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYL 82 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~~~~~~~~f~-~-~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L 82 (93)
+.|.|.+|+|||+.++.+.+ ++.+... . .+++++....+..+++..|++++... +... .+..+....+.+.+
T Consensus 45 ~~iyG~~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~-p~~g---~~~~~~~~~l~~~~ 118 (366)
T COG1474 45 IIIYGPTGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKILNKLGKV-PLTG---DSSLEILKRLYDNL 118 (366)
T ss_pred EEEECCCCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCC-CCCC---CchHHHHHHHHHHH
Confidence 78899999999999999999 5554422 1 68899999999999999999998622 2111 67777788888887
Q ss_pred C--CCeEEEEeeC
Q 037564 83 T--NKKYFIVLDD 93 (93)
Q Consensus 83 ~--~kr~LlVlDD 93 (93)
. ++.+++|||+
T Consensus 119 ~~~~~~~IvvLDE 131 (366)
T COG1474 119 SKKGKTVIVILDE 131 (366)
T ss_pred HhcCCeEEEEEcc
Confidence 4 4778888996
No 13
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.95 E-value=1.2e-08 Score=70.13 Aligned_cols=86 Identities=10% Similarity=0.080 Sum_probs=55.3
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCC-CCCHHHHHHHHHHhhCCCCCCc---c-----ccC-CCH
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSI-SYDFRMVLDDIIKSVMPPSRVS---V-----IIG-EDY 71 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~il~~l~~~~~~~---~-----~~~-~~~ 71 (93)
.+++.|.|++|.||||++.++.+ . +..+.|+++.. +.++..+...++..+....... . ... .+.
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~--~----~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 105 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAA--G----KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASL 105 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--h----CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCH
Confidence 46899999999999999999886 2 23688999964 4566677777777664211110 0 001 223
Q ss_pred HHHHHHHHHhcC--CCeEEEEeeC
Q 037564 72 QLKKSILRDYLT--NKKYFIVLDD 93 (93)
Q Consensus 72 ~~l~~~l~~~L~--~kr~LlVlDD 93 (93)
..+...+...+. +.+++||+||
T Consensus 106 ~~~~~~~~~~l~~~~~~~~lvlDD 129 (903)
T PRK04841 106 SSLFAQLFIELADWHQPLYLVIDD 129 (903)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeC
Confidence 334444444442 5789999998
No 14
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.90 E-value=1.2e-08 Score=55.15 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=21.2
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+.+.|.|++|+||||+++.++.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~ 24 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAR 24 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHh
Confidence 46789999999999999999998
No 15
>PF13173 AAA_14: AAA domain
Probab=98.89 E-value=5.6e-09 Score=56.91 Aligned_cols=41 Identities=5% Similarity=-0.059 Sum_probs=29.6
Q ss_pred CCceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCC
Q 037564 1 FSGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISY 44 (93)
Q Consensus 1 ~~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 44 (93)
+.+++.|.|+.|+|||||+++++.+ .. .-...+|+++....
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~--~~-~~~~~~yi~~~~~~ 41 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKD--LL-PPENILYINFDDPR 41 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH--hc-ccccceeeccCCHH
Confidence 3578999999999999999999873 22 22345666665443
No 16
>PTZ00202 tuzin; Provisional
Probab=98.88 E-value=5.2e-08 Score=62.88 Aligned_cols=76 Identities=11% Similarity=0.040 Sum_probs=50.6
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHHHHHHh
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY 81 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 81 (93)
++++.|.|++|+|||||++.+.. ... + ..++.- ..+..++++.++.+|+.+.. ....++.+.|.+.
T Consensus 286 privvLtG~~G~GKTTLlR~~~~--~l~--~--~qL~vN--prg~eElLr~LL~ALGV~p~------~~k~dLLrqIqea 351 (550)
T PTZ00202 286 PRIVVFTGFRGCGKSSLCRSAVR--KEG--M--PAVFVD--VRGTEDTLRSVVKALGVPNV------EACGDLLDFISEA 351 (550)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh--cCC--c--eEEEEC--CCCHHHHHHHHHHHcCCCCc------ccHHHHHHHHHHH
Confidence 35889999999999999999987 332 1 122222 22779999999999995322 3334555555555
Q ss_pred c-----C-CCeEEEEe
Q 037564 82 L-----T-NKKYFIVL 91 (93)
Q Consensus 82 L-----~-~kr~LlVl 91 (93)
| . +++.+||+
T Consensus 352 Ll~~~~e~GrtPVLII 367 (550)
T PTZ00202 352 CRRAKKMNGETPLLVL 367 (550)
T ss_pred HHHHHHhCCCCEEEEE
Confidence 4 2 56666665
No 17
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.87 E-value=2.9e-08 Score=54.16 Aligned_cols=40 Identities=10% Similarity=-0.086 Sum_probs=28.0
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCC
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSIS 43 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 43 (93)
.+.+.|+|++|+|||++++.+++ .....-...+++...+.
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~~~~~ 58 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIAN--ELFRPGAPFLYLNASDL 58 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HhhcCCCCeEEEehhhh
Confidence 35788999999999999999998 33222233455555443
No 18
>PRK08118 topology modulation protein; Reviewed
Probab=98.86 E-value=1.1e-09 Score=62.34 Aligned_cols=34 Identities=12% Similarity=0.185 Sum_probs=26.4
Q ss_pred eeeEEcCCCCcHHHHHHHHhcCcccc-cCCCeeEE
Q 037564 4 CKPILDSSSFDKTAFTADTYNNNHVK-FYFDCHAW 37 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~w 37 (93)
-|.|+|++|+||||||+.+++...+. -+|+...|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 47899999999999999999854433 34666664
No 19
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.84 E-value=1.1e-08 Score=58.44 Aligned_cols=28 Identities=11% Similarity=-0.013 Sum_probs=19.6
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccC
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFY 31 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~ 31 (93)
++.+.|+|++|+|||+|.+.++. .....
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~--~~~~~ 51 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLD--RLAER 51 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHH--HHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--HHHhc
Confidence 46789999999999999999988 44444
No 20
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=98.84 E-value=1.1e-08 Score=61.16 Aligned_cols=34 Identities=18% Similarity=0.147 Sum_probs=27.8
Q ss_pred eeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEE
Q 037564 4 CKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVR 39 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~ 39 (93)
-++|.|.+|+|||||...++. .....|.+..+++
T Consensus 15 r~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEe
Confidence 468999999999999999998 6777886655543
No 21
>PRK12608 transcription termination factor Rho; Provisional
Probab=98.83 E-value=3.3e-08 Score=62.41 Aligned_cols=88 Identities=11% Similarity=-0.042 Sum_probs=54.1
Q ss_pred eeeEEcCCCCcHHHHHHHHhcCcccccCC-Ce-eEEEEeCC-CCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHH
Q 037564 4 CKPILDSSSFDKTAFTADTYNNNHVKFYF-DC-HAWVRVSI-SYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILR 79 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f-~~-~~wv~~~~-~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~ 79 (93)
-+.|.|.+|+|||||++.+++ .+.... +. ++|+.+.+ ..+..++++.+...+..+........ ...-.....+-
T Consensus 135 R~LIvG~pGtGKTTLl~~la~--~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~A 212 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAA--AVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERA 212 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHH
Confidence 468999999999999999888 443322 33 46666654 56778899988876654322111000 11111222233
Q ss_pred Hhc--CCCeEEEEeeC
Q 037564 80 DYL--TNKKYFIVLDD 93 (93)
Q Consensus 80 ~~L--~~kr~LlVlDD 93 (93)
+++ ++++++||+|+
T Consensus 213 e~f~~~GkdVVLvlDs 228 (380)
T PRK12608 213 KRLVEQGKDVVILLDS 228 (380)
T ss_pred HHHHHcCCCEEEEEeC
Confidence 333 57899999996
No 22
>PRK07261 topology modulation protein; Provisional
Probab=98.79 E-value=3.6e-08 Score=56.28 Aligned_cols=54 Identities=13% Similarity=0.059 Sum_probs=32.0
Q ss_pred eeeEEcCCCCcHHHHHHHHhcCcccc-cCCCeeEEEEeCCCCCHHHHHHHHHHhh
Q 037564 4 CKPILDSSSFDKTAFTADTYNNNHVK-FYFDCHAWVRVSISYDFRMVLDDIIKSV 57 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~~~~~ll~~il~~l 57 (93)
-|.|+|++|+||||||+.+.....+. -+.+...|-.-....+..++...+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~ 56 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNFL 56 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHHH
Confidence 48899999999999999987632221 1344455533223334444444444433
No 23
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.78 E-value=3.8e-08 Score=58.22 Aligned_cols=43 Identities=7% Similarity=-0.089 Sum_probs=32.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRM 48 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 48 (93)
.++.|+|.+|+|||++|.+++. .....-..++|++.. ..+...
T Consensus 24 ~i~~i~G~~GsGKT~l~~~la~--~~~~~~~~v~yi~~e-~~~~~r 66 (225)
T PRK09361 24 TITQIYGPPGSGKTNICLQLAV--EAAKNGKKVIYIDTE-GLSPER 66 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEECC-CCCHHH
Confidence 5789999999999999999887 333344567888877 455443
No 24
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.77 E-value=1.7e-08 Score=64.98 Aligned_cols=49 Identities=10% Similarity=-0.060 Sum_probs=37.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLD 51 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~ 51 (93)
+-+.+.|++|+|||++|+.+++.......+....|+.+.+.++...++.
T Consensus 195 ~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 195 KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc
Confidence 4578899999999999999988433334677778999988887666543
No 25
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.76 E-value=1.2e-07 Score=65.48 Aligned_cols=86 Identities=9% Similarity=-0.046 Sum_probs=55.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCccccc-----CCC--eeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKF-----YFD--CHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKK 75 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~-----~f~--~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~ 75 (93)
.++.|.|++|+|||+.++.+.. ++.+ ... ..+++++........+...|.+++....+... .+.....
T Consensus 782 nvLYIyG~PGTGKTATVK~VLr--ELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~G---lsS~evL 856 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYSVIQ--LLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNA---LNSFKIL 856 (1164)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCcc---ccHHHHH
Confidence 4567999999999999999987 3321 112 24567766667788888888888854332211 3444555
Q ss_pred HHHHHhcC--CC-eEEEEeeC
Q 037564 76 SILRDYLT--NK-KYFIVLDD 93 (93)
Q Consensus 76 ~~l~~~L~--~k-r~LlVlDD 93 (93)
..+...+. .+ ..+||||+
T Consensus 857 erLF~~L~k~~r~v~IIILDE 877 (1164)
T PTZ00112 857 DRLFNQNKKDNRNVSILIIDE 877 (1164)
T ss_pred HHHHhhhhcccccceEEEeeh
Confidence 55555542 22 35888996
No 26
>PRK08116 hypothetical protein; Validated
Probab=98.76 E-value=6.9e-08 Score=58.75 Aligned_cols=34 Identities=18% Similarity=-0.105 Sum_probs=25.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEE
Q 037564 4 CKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVR 39 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~ 39 (93)
-+.++|.+|+|||.||..+++ .+...-...+|++
T Consensus 116 gl~l~G~~GtGKThLa~aia~--~l~~~~~~v~~~~ 149 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIAN--ELIEKGVPVIFVN 149 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEE
Confidence 378999999999999999999 5544333445554
No 27
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.75 E-value=9.3e-08 Score=55.95 Aligned_cols=47 Identities=6% Similarity=-0.139 Sum_probs=34.7
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHH
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLD 51 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~ 51 (93)
.+++.|+|++|+|||+++.+++. .....-..++|++... ++...+.+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~--~~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAV--NAARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCC-CCHHHHHH
Confidence 35789999999999999999887 3333446788988865 55555443
No 28
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.74 E-value=1.3e-08 Score=55.19 Aligned_cols=20 Identities=10% Similarity=0.018 Sum_probs=18.8
Q ss_pred eeEEcCCCCcHHHHHHHHhc
Q 037564 5 KPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~ 24 (93)
|.++|++|+|||++|+.+++
T Consensus 1 ill~G~~G~GKT~l~~~la~ 20 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ 20 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHh
Confidence 57899999999999999999
No 29
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.72 E-value=9.3e-08 Score=55.77 Aligned_cols=55 Identities=11% Similarity=-0.014 Sum_probs=33.4
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCC-CHHHHHHHHHHhhC
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISY-DFRMVLDDIIKSVM 58 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~ll~~il~~l~ 58 (93)
+++|.++|+.|+||||.+.+++. .....-..+..++..... ...+-++..++.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa--~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~ 56 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAA--RLKLKGKKVALISADTYRIGAVEQLKTYAEILG 56 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEESTSSTHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHH--HHhhccccceeecCCCCCccHHHHHHHHHHHhc
Confidence 46899999999999998888777 333222233445544322 33444555555555
No 30
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.71 E-value=1.2e-07 Score=56.37 Aligned_cols=91 Identities=8% Similarity=0.033 Sum_probs=51.3
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccC----CCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCC---cc-ccC-CCH-
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFY----FDCHAWVRVSISYDFRMVLDDIIKSVMPPSRV---SV-IIG-EDY- 71 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~---~~-~~~-~~~- 71 (93)
..++.|.|.+|+|||+||.+++........ -..++|++....++...+ .++++........ .. -.. .+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYNSD 97 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCCHH
Confidence 357899999999999999998753122211 256789888776665443 3333333211100 00 001 222
Q ss_pred --HHHHHHHHHhcC-C-CeEEEEeeC
Q 037564 72 --QLKKSILRDYLT-N-KKYFIVLDD 93 (93)
Q Consensus 72 --~~l~~~l~~~L~-~-kr~LlVlDD 93 (93)
......+.+.+. . +--++|+|.
T Consensus 98 ~l~~~l~~l~~~l~~~~~~~liVIDS 123 (235)
T cd01123 98 HQLQLLEELEAILIESSRIKLVIVDS 123 (235)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEeC
Confidence 334455555553 3 556899983
No 31
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.71 E-value=2.3e-08 Score=58.79 Aligned_cols=23 Identities=17% Similarity=0.104 Sum_probs=21.2
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
++.+.|+|+.|+|||+|++.+.+
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~ 42 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFIN 42 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCcCCHHHHHHHHHH
Confidence 46889999999999999999988
No 32
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.69 E-value=1.5e-08 Score=54.43 Aligned_cols=21 Identities=10% Similarity=0.056 Sum_probs=19.9
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+|.|.|++|+||||+|+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999988
No 33
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.67 E-value=4.5e-07 Score=55.77 Aligned_cols=86 Identities=14% Similarity=0.059 Sum_probs=59.1
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC-ccccc---CCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHHHHH
Q 037564 4 CKPILDSSSFDKTAFTADTYNN-NHVKF---YFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILR 79 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~-~~~~~---~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 79 (93)
.+.|+|.++.|||++++++... +...+ .--+++.+.+...++...+...|++.++.+.... .+...+.....
T Consensus 63 ~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~----~~~~~~~~~~~ 138 (302)
T PF05621_consen 63 NLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPR----DRVAKLEQQVL 138 (302)
T ss_pred ceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCC----CCHHHHHHHHH
Confidence 5789999999999999998863 11111 1124667788888999999999999999765432 44555555555
Q ss_pred HhcCC-CeEEEEeeC
Q 037564 80 DYLTN-KKYFIVLDD 93 (93)
Q Consensus 80 ~~L~~-kr~LlVlDD 93 (93)
..|+. +-=+||+|+
T Consensus 139 ~llr~~~vrmLIIDE 153 (302)
T PF05621_consen 139 RLLRRLGVRMLIIDE 153 (302)
T ss_pred HHHHHcCCcEEEeec
Confidence 56643 223777774
No 34
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=7.1e-08 Score=59.91 Aligned_cols=25 Identities=8% Similarity=-0.041 Sum_probs=22.6
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNN 26 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~ 26 (93)
.|+|.++|++|.|||+|++.+++..
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkL 201 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKL 201 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhh
Confidence 4789999999999999999999953
No 35
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.63 E-value=2.5e-07 Score=58.43 Aligned_cols=86 Identities=16% Similarity=0.259 Sum_probs=59.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhC-CCCCCcc-ccC-CCHHHHHHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVM-PPSRVSV-IIG-EDYQLKKSILR 79 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~-~~~~~~~-~~~-~~~~~l~~~l~ 79 (93)
..|-|.|-+|.|||.+.+++++.. . ....|+++-..++...+++.|+.+.. .+..... +.. .+..+.+..+.
T Consensus 31 S~~~iyG~sgTGKT~~~r~~l~~~--n---~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~ 105 (438)
T KOG2543|consen 31 SIVHIYGHSGTGKTYLVRQLLRKL--N---LENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLV 105 (438)
T ss_pred eeEEEeccCCCchhHHHHHHHhhc--C---CcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHH
Confidence 356789999999999999999943 2 23589999999999999999999985 2221111 111 23334444444
Q ss_pred Hh--cC--CCeEEEEeeC
Q 037564 80 DY--LT--NKKYFIVLDD 93 (93)
Q Consensus 80 ~~--L~--~kr~LlVlDD 93 (93)
.+ .+ ++.++||||+
T Consensus 106 q~~~~t~~d~~~~liLDn 123 (438)
T KOG2543|consen 106 QWPAATNRDQKVFLILDN 123 (438)
T ss_pred hhHHhhccCceEEEEEcC
Confidence 42 22 4589999996
No 36
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=98.63 E-value=1.5e-07 Score=58.52 Aligned_cols=83 Identities=12% Similarity=0.039 Sum_probs=49.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHHh
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRDY 81 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~~ 81 (93)
+++-|.|++|+||||||.+++. .....-..++|+...+.++.. .+++++.....-.-.+ .+.++....+...
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~--~~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~l 128 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAETL 128 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 5788999999999999998877 333334556788766655542 2344432211110111 4555566666555
Q ss_pred cCC-CeEEEEee
Q 037564 82 LTN-KKYFIVLD 92 (93)
Q Consensus 82 L~~-kr~LlVlD 92 (93)
++. .--++|+|
T Consensus 129 i~~~~~~lIVID 140 (321)
T TIGR02012 129 VRSGAVDIIVVD 140 (321)
T ss_pred hhccCCcEEEEc
Confidence 543 44578887
No 37
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=98.62 E-value=1.6e-07 Score=58.47 Aligned_cols=83 Identities=14% Similarity=0.051 Sum_probs=50.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHHh
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRDY 81 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~~ 81 (93)
+++-|.|++|+||||||.+++. .....-..++|+.....+++. .+++++.....-.-.. .+.++....+...
T Consensus 56 ~iteI~Gp~GsGKTtLal~~~~--~~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~l 128 (325)
T cd00983 56 RIIEIYGPESSGKTTLALHAIA--EAQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADSL 128 (325)
T ss_pred eEEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHHH
Confidence 5788999999999999999876 333334567788776655542 2334432211100111 4556666666655
Q ss_pred cCC-CeEEEEee
Q 037564 82 LTN-KKYFIVLD 92 (93)
Q Consensus 82 L~~-kr~LlVlD 92 (93)
++. .--++|+|
T Consensus 129 i~s~~~~lIVID 140 (325)
T cd00983 129 VRSGAVDLIVVD 140 (325)
T ss_pred HhccCCCEEEEc
Confidence 543 34578887
No 38
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=98.62 E-value=1.7e-07 Score=57.06 Aligned_cols=89 Identities=12% Similarity=0.187 Sum_probs=52.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCC-eeEEEEeCCC-CCHHHHHHHHHHhhCCCCCCcc--ccCC-CHH-----
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFD-CHAWVRVSIS-YDFRMVLDDIIKSVMPPSRVSV--IIGE-DYQ----- 72 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~-~~~wv~~~~~-~~~~~ll~~il~~l~~~~~~~~--~~~~-~~~----- 72 (93)
.-++|.|.+|+|||||+..+++ .++.+|. .++++-+.+. ....++.+.+.+.-......-. ..+. ...
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~ 147 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVA 147 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 4578999999999999999998 5554554 4455566554 3456666666543211100000 0001 111
Q ss_pred HHHHHHHHhc--C-CCeEEEEeeC
Q 037564 73 LKKSILRDYL--T-NKKYFIVLDD 93 (93)
Q Consensus 73 ~l~~~l~~~L--~-~kr~LlVlDD 93 (93)
...-.+-+++ + ++.+|+++||
T Consensus 148 ~~a~~~AEyfr~~~g~~Vl~~~Ds 171 (274)
T cd01133 148 LTGLTMAEYFRDEEGQDVLLFIDN 171 (274)
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeC
Confidence 1223355555 3 8899999997
No 39
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.61 E-value=3.2e-07 Score=54.07 Aligned_cols=40 Identities=8% Similarity=-0.105 Sum_probs=29.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISY 44 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~ 44 (93)
.++.|.|.+|+||||+|.+++. .....-..++|++....+
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~--~~~~~g~~v~yi~~e~~~ 59 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAV--ETAGQGKKVAYIDTEGLS 59 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCCCC
Confidence 5788999999999999999887 433333456677655444
No 40
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.61 E-value=1.7e-07 Score=59.44 Aligned_cols=26 Identities=12% Similarity=0.031 Sum_probs=20.6
Q ss_pred eeEEcCCCCcHHHHHHHHhcCcccccCC
Q 037564 5 KPILDSSSFDKTAFTADTYNNNHVKFYF 32 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~~~~~~~~f 32 (93)
.-+||++|+||||||+.+.. .....|
T Consensus 51 mIl~GPPG~GKTTlA~liA~--~~~~~f 76 (436)
T COG2256 51 MILWGPPGTGKTTLARLIAG--TTNAAF 76 (436)
T ss_pred eEEECCCCCCHHHHHHHHHH--hhCCce
Confidence 35799999999999999988 444344
No 41
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.60 E-value=5.4e-07 Score=52.33 Aligned_cols=80 Identities=14% Similarity=-0.033 Sum_probs=42.2
Q ss_pred eeeEEcCCCCcHHHHHHHHhcCcccccC-CCe---eEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHH
Q 037564 4 CKPILDSSSFDKTAFTADTYNNNHVKFY-FDC---HAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSIL 78 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~-f~~---~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l 78 (93)
||+|.|++|+||||+|+.+.. .+... ..+ ....+............. ..... ......... .+.+.+.+.+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~--~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~-~~~~~~~p~a~d~~~l~~~l 76 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQ--ILNKRGIPAMEMDIILSLDDFYDDYHLRDR-KGRGE-NRYNFDHPDAFDFDLLKEDL 76 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH--HHTTCTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCT-TTSSTTSGGGBSHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH--HhCccCcCccceeEEEeecccccccchhhH-hhccc-cccCCCCccccCHHHHHHHH
Confidence 699999999999999999987 44422 221 223333322222222222 11111 110000112 6777787777
Q ss_pred HHhcCCCeE
Q 037564 79 RDYLTNKKY 87 (93)
Q Consensus 79 ~~~L~~kr~ 87 (93)
....+++.+
T Consensus 77 ~~L~~g~~i 85 (194)
T PF00485_consen 77 KALKNGGSI 85 (194)
T ss_dssp HHHHTTSCE
T ss_pred HHHhCCCcc
Confidence 776665543
No 42
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.60 E-value=7.9e-07 Score=60.77 Aligned_cols=89 Identities=19% Similarity=0.135 Sum_probs=62.2
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCC-CCCHHHHHHHHHHhhCCCCCCcc--------ccC-CCH
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSI-SYDFRMVLDDIIKSVMPPSRVSV--------IIG-EDY 71 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~il~~l~~~~~~~~--------~~~-~~~ 71 (93)
.|.+.|..|.|.|||||+.+... ... .-..+.|.++.. +.++..+++.++..+....+... ... .+.
T Consensus 37 ~RL~li~APAGfGKttl~aq~~~--~~~-~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l 113 (894)
T COG2909 37 YRLILISAPAGFGKTTLLAQWRE--LAA-DGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSL 113 (894)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHH--hcC-cccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccH
Confidence 47899999999999999999865 222 334578999875 45778899999988863222111 111 455
Q ss_pred HHHHHHHHHhcC--CCeEEEEeeC
Q 037564 72 QLKKSILRDYLT--NKKYFIVLDD 93 (93)
Q Consensus 72 ~~l~~~l~~~L~--~kr~LlVlDD 93 (93)
..+.+.+..-+. ++++.+||||
T Consensus 114 ~~l~~~L~~Ela~~~~pl~LVlDD 137 (894)
T COG2909 114 ESLLSSLLNELASYEGPLYLVLDD 137 (894)
T ss_pred HHHHHHHHHHHHhhcCceEEEecc
Confidence 566666666553 4688999998
No 43
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.60 E-value=9.8e-07 Score=49.14 Aligned_cols=40 Identities=8% Similarity=0.009 Sum_probs=28.8
Q ss_pred eeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCC
Q 037564 4 CKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYD 45 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 45 (93)
++.|.|++|+||||++..+.. .....-..+.|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~--~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLAL--NIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHH--HHHhcCCEEEEEECCcchH
Confidence 468999999999999999988 3333334566776655443
No 44
>PRK08233 hypothetical protein; Provisional
Probab=98.58 E-value=3.8e-07 Score=52.10 Aligned_cols=23 Identities=22% Similarity=0.072 Sum_probs=21.2
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~ 25 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTH 25 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999987
No 45
>PRK09354 recA recombinase A; Provisional
Probab=98.58 E-value=2.5e-07 Score=58.06 Aligned_cols=83 Identities=13% Similarity=0.044 Sum_probs=51.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHHh
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRDY 81 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~~ 81 (93)
+++-|.|++|+||||||-+++. .....-..++|+.....++.. .+++++.....-.-.+ .+.++....+...
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~--~~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~l 133 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIA--EAQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADTL 133 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 5788999999999999999877 333344567888777666642 3344432211111111 4556666666665
Q ss_pred cCC-CeEEEEee
Q 037564 82 LTN-KKYFIVLD 92 (93)
Q Consensus 82 L~~-kr~LlVlD 92 (93)
++. .--++|+|
T Consensus 134 i~s~~~~lIVID 145 (349)
T PRK09354 134 VRSGAVDLIVVD 145 (349)
T ss_pred hhcCCCCEEEEe
Confidence 543 44588888
No 46
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.57 E-value=2e-07 Score=53.27 Aligned_cols=34 Identities=15% Similarity=0.153 Sum_probs=26.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEE
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWV 38 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv 38 (93)
.+|.+.|++|+||||+|+.++. ++...+....++
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 4789999999999999999988 555444444444
No 47
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.56 E-value=3.6e-07 Score=57.89 Aligned_cols=49 Identities=12% Similarity=0.067 Sum_probs=32.4
Q ss_pred eeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHh
Q 037564 4 CKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKS 56 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~ 56 (93)
-+.+||++|+||||||+.+....+-.. ..|+..+-......-.+.+.++
T Consensus 164 SmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred ceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHH
Confidence 356899999999999999998544333 3456666544444444555443
No 48
>PRK12377 putative replication protein; Provisional
Probab=98.56 E-value=5.6e-07 Score=54.27 Aligned_cols=35 Identities=14% Similarity=-0.098 Sum_probs=26.4
Q ss_pred eeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEe
Q 037564 4 CKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRV 40 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~ 40 (93)
-+.++|.+|+|||.||..+++ .+......+.++++
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~--~l~~~g~~v~~i~~ 137 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGN--RLLAKGRSVIVVTV 137 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEH
Confidence 578999999999999999999 55444334456544
No 49
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=98.56 E-value=1.5e-06 Score=51.42 Aligned_cols=88 Identities=7% Similarity=0.029 Sum_probs=51.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCC------CeeEEEEeCCCCCHHHHHHHHHHhhCCCCC---Ccc-ccC-CCH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYF------DCHAWVRVSISYDFRMVLDDIIKSVMPPSR---VSV-IIG-EDY 71 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f------~~~~wv~~~~~~~~~~ll~~il~~l~~~~~---~~~-~~~-~~~ 71 (93)
.++.|.|++|+|||+||.+++.. ....- ..++|+.....++...+ .++.+....... ... -.. .+.
T Consensus 20 ~v~~I~G~~GsGKT~l~~~ia~~--~~~~~~~~g~~~~v~yi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (226)
T cd01393 20 RITEIFGEFGSGKTQLCLQLAVE--AQLPGELGGLEGKVVYIDTEGAFRPERL-VQLAVRFGLDPEEVLDNIYVARPYNG 96 (226)
T ss_pred cEEEEeCCCCCChhHHHHHHHHH--hhcccccCCCcceEEEEecCCCCCHHHH-HHHHHHhccchhhhhccEEEEeCCCH
Confidence 58899999999999999998763 22222 45678887766665444 333333221100 001 111 455
Q ss_pred HHHHHHHHHhcC---C-CeEEEEeeC
Q 037564 72 QLKKSILRDYLT---N-KKYFIVLDD 93 (93)
Q Consensus 72 ~~l~~~l~~~L~---~-kr~LlVlDD 93 (93)
+++...+.+... . +--|+|+|.
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~lvVIDs 122 (226)
T cd01393 97 EQQLEIVEELERIMSSGRVDLVVVDS 122 (226)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEcC
Confidence 666666655543 3 445888884
No 50
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.55 E-value=5.3e-07 Score=53.50 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=20.8
Q ss_pred eeEEcCCCCcHHHHHHHHhcCcccccCC
Q 037564 5 KPILDSSSFDKTAFTADTYNNNHVKFYF 32 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~~~~~~~~f 32 (93)
+.+||++|+||||||..+.+ +....|
T Consensus 53 ~lf~GPPG~GKTTLA~IIA~--e~~~~~ 78 (233)
T PF05496_consen 53 MLFYGPPGLGKTTLARIIAN--ELGVNF 78 (233)
T ss_dssp EEEESSTTSSHHHHHHHHHH--HCT--E
T ss_pred EEEECCCccchhHHHHHHHh--ccCCCe
Confidence 57899999999999999999 554444
No 51
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.54 E-value=3.2e-07 Score=54.10 Aligned_cols=22 Identities=18% Similarity=0.016 Sum_probs=20.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|.+|+||||+|+.+..
T Consensus 9 iiIgIaG~SgSGKTTva~~l~~ 30 (218)
T COG0572 9 IIIGIAGGSGSGKTTVAKELSE 30 (218)
T ss_pred EEEEEeCCCCCCHHHHHHHHHH
Confidence 4899999999999999999988
No 52
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.54 E-value=2.8e-07 Score=52.99 Aligned_cols=35 Identities=9% Similarity=-0.078 Sum_probs=23.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEE
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVR 39 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~ 39 (93)
.-+.++|++|+|||.||..+.+ +.-.+=..+.|+.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~--~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIAN--EAIRKGYSVLFIT 82 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEE
T ss_pred eEEEEEhhHhHHHHHHHHHHHH--HhccCCcceeEee
Confidence 3478899999999999999987 3333222345554
No 53
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.52 E-value=7.9e-07 Score=53.50 Aligned_cols=34 Identities=9% Similarity=-0.038 Sum_probs=24.8
Q ss_pred eeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEE
Q 037564 4 CKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVR 39 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~ 39 (93)
.+.++|.+|+|||+||..+++ .+...-..+++++
T Consensus 101 ~~~l~G~~GtGKThLa~aia~--~l~~~g~~v~~it 134 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICN--ELLLRGKSVLIIT 134 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEE
Confidence 578899999999999999998 4433333344543
No 54
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.51 E-value=5.7e-07 Score=58.21 Aligned_cols=26 Identities=19% Similarity=-0.028 Sum_probs=21.9
Q ss_pred eeeEEcCCCCcHHHHHHHHhcCcccccC
Q 037564 4 CKPILDSSSFDKTAFTADTYNNNHVKFY 31 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~ 31 (93)
-+.|+|++|+|||+|++.+++ .+...
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~--~l~~~ 157 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGN--YVVQN 157 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHH--HHHHh
Confidence 478999999999999999998 55443
No 55
>PRK06762 hypothetical protein; Provisional
Probab=98.51 E-value=1e-07 Score=53.97 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=22.1
Q ss_pred CCceeeEEcCCCCcHHHHHHHHhc
Q 037564 1 FSGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 1 ~~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
|+.+|.|.|++|+||||+|+.+..
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~ 24 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQE 24 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999877
No 56
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=98.50 E-value=4.5e-07 Score=54.89 Aligned_cols=90 Identities=16% Similarity=0.126 Sum_probs=51.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccC----CCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCC---cc-ccC-CCHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFY----FDCHAWVRVSISYDFRMVLDDIIKSVMPPSRV---SV-IIG-EDYQL 73 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~---~~-~~~-~~~~~ 73 (93)
.+.=|+|++|+|||.|+-+++-...+... =..++|++-...++...+ .+|++........ .+ -.. .+.++
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl-~~i~~~~~~~~~~~l~~I~v~~~~~~~~ 117 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERL-QQIAERFGLDPEEILDNIFVIRVFDLEE 117 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHH-HHHHHHTTS-HHHHHHTEEEEE-SSHHH
T ss_pred cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHH-HHHhhccccccchhhhceeeeecCCHHH
Confidence 46779999999999999887653333322 235789988888887665 4566654322110 00 111 34444
Q ss_pred HHHHH---HHhcC-CCeEEEEeeC
Q 037564 74 KKSIL---RDYLT-NKKYFIVLDD 93 (93)
Q Consensus 74 l~~~l---~~~L~-~kr~LlVlDD 93 (93)
+...+ ...+. ++--|||+|.
T Consensus 118 l~~~L~~l~~~l~~~~ikLIVIDS 141 (256)
T PF08423_consen 118 LLELLEQLPKLLSESKIKLIVIDS 141 (256)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEET
T ss_pred HHHHHHHHHhhccccceEEEEecc
Confidence 44443 33342 3444888984
No 57
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.49 E-value=1.2e-06 Score=49.91 Aligned_cols=21 Identities=14% Similarity=0.004 Sum_probs=19.1
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
++.+.|++|+||||++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678899999999999998877
No 58
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.48 E-value=2.3e-06 Score=52.52 Aligned_cols=84 Identities=18% Similarity=0.146 Sum_probs=44.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCC-CHHHHHHHHHHhhCCCCCCccccCCCHHHHHHHHHHh
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISY-DFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY 81 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 81 (93)
++++++|++|+||||++..+......+..-..+..++..... ...+.+....+.++.+... . .+...+...+..
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~-~---~~~~~l~~~l~~- 269 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKV-A---RDPKELRKALDR- 269 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceec-c---CCHHHHHHHHHH-
Confidence 589999999999999999988732212111233445543322 2233333434443322211 1 345555555544
Q ss_pred cCCCeEEEEee
Q 037564 82 LTNKKYFIVLD 92 (93)
Q Consensus 82 L~~kr~LlVlD 92 (93)
+.+.. ++++|
T Consensus 270 ~~~~d-~vliD 279 (282)
T TIGR03499 270 LRDKD-LILID 279 (282)
T ss_pred ccCCC-EEEEe
Confidence 44443 66676
No 59
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.48 E-value=9.3e-07 Score=55.16 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.+.++|++|+|||+||+.+++
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~ 73 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIAN 73 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHH
Confidence 4578999999999999999998
No 60
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.47 E-value=8.4e-07 Score=54.64 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+.++|++|+|||+||+.+++
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~ 52 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIAN 52 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999988
No 61
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.46 E-value=1.4e-06 Score=52.77 Aligned_cols=34 Identities=12% Similarity=-0.025 Sum_probs=24.9
Q ss_pred eeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEE
Q 037564 4 CKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVR 39 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~ 39 (93)
-+.+.|.+|+|||.||.++.+ ++...-..+.|++
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~--~l~~~g~sv~f~~ 140 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGN--ELLKAGISVLFIT 140 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEEE
Confidence 367899999999999999999 5553323344544
No 62
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.46 E-value=1e-06 Score=54.58 Aligned_cols=35 Identities=9% Similarity=-0.084 Sum_probs=25.1
Q ss_pred eeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEe
Q 037564 4 CKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRV 40 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~ 40 (93)
-+.++|..|+|||.||..+++ .+...-..+.|+++
T Consensus 158 gl~L~G~~G~GKThLa~Aia~--~l~~~g~~v~~~~~ 192 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIAN--ELAKKGVSSTLLHF 192 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHH--HHHHcCCCEEEEEH
Confidence 467899999999999999999 44333223455543
No 63
>PTZ00301 uridine kinase; Provisional
Probab=98.45 E-value=2.7e-07 Score=54.37 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-+|+|.|.+|+||||||+.+..
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHH
Confidence 4899999999999999998765
No 64
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.45 E-value=2.4e-06 Score=50.71 Aligned_cols=21 Identities=14% Similarity=-0.037 Sum_probs=19.6
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+|+|.|.+|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999887
No 65
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.45 E-value=6.5e-07 Score=58.76 Aligned_cols=22 Identities=14% Similarity=0.052 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+-+.++|++|+|||++|+.+++
T Consensus 217 ~GILLyGPPGTGKT~LAKAlA~ 238 (512)
T TIGR03689 217 KGVLLYGPPGCGKTLIAKAVAN 238 (512)
T ss_pred cceEEECCCCCcHHHHHHHHHH
Confidence 3478899999999999999998
No 66
>PRK08181 transposase; Validated
Probab=98.44 E-value=1.3e-06 Score=53.23 Aligned_cols=34 Identities=9% Similarity=-0.174 Sum_probs=24.4
Q ss_pred eeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEE
Q 037564 4 CKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVR 39 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~ 39 (93)
-+.++|++|+|||.||..+.+ +.......+.|++
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~--~a~~~g~~v~f~~ 141 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGL--ALIENGWRVLFTR 141 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHH--HHHHcCCceeeee
Confidence 478999999999999999987 4333322344543
No 67
>PRK06921 hypothetical protein; Provisional
Probab=98.44 E-value=1.2e-06 Score=53.30 Aligned_cols=36 Identities=11% Similarity=-0.030 Sum_probs=26.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccC-CCeeEEEEe
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFY-FDCHAWVRV 40 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~ 40 (93)
.-+.++|.+|+|||.||..+++ .+... -..++|++.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~--~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAAN--ELMRKKGVPVLYFPF 154 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHH--HHhhhcCceEEEEEH
Confidence 3578999999999999999998 54443 334456653
No 68
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=98.42 E-value=1.6e-06 Score=53.88 Aligned_cols=55 Identities=5% Similarity=-0.040 Sum_probs=37.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccC----CCeeEEEEeCCCCCHHHHHHHHHHhhC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFY----FDCHAWVRVSISYDFRMVLDDIIKSVM 58 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~ll~~il~~l~ 58 (93)
.++-|+|++|+|||+++.+++........ =...+|++....+++..+. ++++.++
T Consensus 103 ~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 103 SITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred cEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 57789999999999999998863222111 1367899988877776654 3444443
No 69
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.41 E-value=2.8e-07 Score=52.02 Aligned_cols=22 Identities=14% Similarity=-0.041 Sum_probs=20.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
--|+|.||+|+||||++.++.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHH
Confidence 3589999999999999999987
No 70
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.41 E-value=1.3e-06 Score=56.10 Aligned_cols=21 Identities=10% Similarity=-0.005 Sum_probs=19.2
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+.++|++|+||||||+.+++
T Consensus 38 ~ilL~GppGtGKTtLA~~ia~ 58 (413)
T PRK13342 38 SMILWGPPGTGKTTLARIIAG 58 (413)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999988
No 71
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.40 E-value=1.6e-06 Score=51.45 Aligned_cols=26 Identities=15% Similarity=0.056 Sum_probs=21.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCccccc
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKF 30 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~ 30 (93)
..+.|+|.+|+|||.|.+.+++ ++..
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~--~~~~ 60 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIAN--EAQK 60 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH--HHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH--HHHh
Confidence 3578999999999999999998 5443
No 72
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.39 E-value=4.6e-06 Score=53.99 Aligned_cols=56 Identities=11% Similarity=-0.139 Sum_probs=33.6
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCC-CCHHHHHHHHHHhhCC
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSIS-YDFRMVLDDIIKSVMP 59 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~ll~~il~~l~~ 59 (93)
+.+|.++|.+|+||||.+..++. .+...-.....++.... ....+.+..+.++++.
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~--~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLAR--YFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHH--HHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 46889999999999999999887 34332112233333221 1224445556666543
No 73
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.39 E-value=2.4e-06 Score=55.40 Aligned_cols=34 Identities=12% Similarity=0.004 Sum_probs=24.6
Q ss_pred eeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEE
Q 037564 4 CKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVR 39 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~ 39 (93)
-+.|+|++|+|||+|++.+++ .+........|++
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~--~l~~~~~~v~yi~ 176 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVH--ALRESGGKILYVR 176 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHH--HHHHcCCCEEEee
Confidence 478999999999999999998 4443222334443
No 74
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.39 E-value=2.7e-07 Score=49.75 Aligned_cols=20 Identities=15% Similarity=0.039 Sum_probs=18.7
Q ss_pred eeEEcCCCCcHHHHHHHHhc
Q 037564 5 KPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~ 24 (93)
|.|.|.+|+||||+|+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 68999999999999999887
No 75
>PRK04296 thymidine kinase; Provisional
Probab=98.39 E-value=7.3e-07 Score=51.74 Aligned_cols=24 Identities=8% Similarity=-0.060 Sum_probs=21.0
Q ss_pred CCceeeEEcCCCCcHHHHHHHHhc
Q 037564 1 FSGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 1 ~~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
++.++.+.|+.|.||||++..++.
T Consensus 1 ~g~i~litG~~GsGKTT~~l~~~~ 24 (190)
T PRK04296 1 MAKLEFIYGAMNSGKSTELLQRAY 24 (190)
T ss_pred CcEEEEEECCCCCHHHHHHHHHHH
Confidence 356888999999999999998887
No 76
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=98.38 E-value=1e-06 Score=55.38 Aligned_cols=55 Identities=7% Similarity=-0.025 Sum_probs=38.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCccccc----CCCeeEEEEeCCCCCHHHHHHHHHHhhC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKF----YFDCHAWVRVSISYDFRMVLDDIIKSVM 58 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~ll~~il~~l~ 58 (93)
.++-|.|++|+|||+|+.+++-...... .-...+|++....+++..+.+ +++.++
T Consensus 127 ~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g 185 (344)
T PLN03187 127 CITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFG 185 (344)
T ss_pred eEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 4667999999999999998864222221 123578999888888777544 555554
No 77
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.37 E-value=1.8e-06 Score=55.25 Aligned_cols=26 Identities=15% Similarity=-0.038 Sum_probs=21.8
Q ss_pred eeeEEcCCCCcHHHHHHHHhcCcccccC
Q 037564 4 CKPILDSSSFDKTAFTADTYNNNHVKFY 31 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~ 31 (93)
.+.|+|++|+|||+|++.+++ ++...
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~--~l~~~ 163 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGN--EILEN 163 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHH--HHHHh
Confidence 578999999999999999998 54433
No 78
>PRK10867 signal recognition particle protein; Provisional
Probab=98.37 E-value=3.9e-06 Score=54.24 Aligned_cols=23 Identities=9% Similarity=-0.019 Sum_probs=19.8
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+|.++|++|+||||.+.+++.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHH
Confidence 36889999999999998877766
No 79
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=98.36 E-value=1.5e-06 Score=54.05 Aligned_cols=55 Identities=7% Similarity=-0.002 Sum_probs=38.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCccccc----CCCeeEEEEeCCCCCHHHHHHHHHHhhC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKF----YFDCHAWVRVSISYDFRMVLDDIIKSVM 58 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~ll~~il~~l~ 58 (93)
+++-|+|++|+|||+|+.+++-...... .=..++|++....+++..+. +++++++
T Consensus 97 ~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g 155 (313)
T TIGR02238 97 SITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFG 155 (313)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcC
Confidence 4677999999999999988764222221 12357899988888877764 4556554
No 80
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=98.36 E-value=3e-06 Score=52.53 Aligned_cols=55 Identities=5% Similarity=-0.002 Sum_probs=38.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccC----CCeeEEEEeCCCCCHHHHHHHHHHhhC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFY----FDCHAWVRVSISYDFRMVLDDIIKSVM 58 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~ll~~il~~l~ 58 (93)
.++-|+|++|+|||+++.+++........ -..++|++....++...+. ++++.++
T Consensus 96 ~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 96 AITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 57789999999999999998764222111 1267899988888876654 4444443
No 81
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.36 E-value=1.3e-06 Score=50.28 Aligned_cols=21 Identities=29% Similarity=0.232 Sum_probs=19.7
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+|+|.|.+|+||||||+.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~ 21 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSN 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999887
No 82
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.36 E-value=1.4e-06 Score=50.58 Aligned_cols=21 Identities=14% Similarity=-0.028 Sum_probs=19.7
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+|+|.|.+|+||||+|+.+..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~ 21 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQR 21 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999988
No 83
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.36 E-value=3.4e-06 Score=53.58 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.9
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++.++|++|+||||++.++..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 84
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.36 E-value=3.4e-06 Score=54.47 Aligned_cols=23 Identities=9% Similarity=-0.073 Sum_probs=20.1
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.++.++|.+|+||||.+..++.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~ 121 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAY 121 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHH
Confidence 35889999999999999888776
No 85
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.35 E-value=3.5e-06 Score=52.77 Aligned_cols=35 Identities=6% Similarity=-0.145 Sum_probs=25.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEE
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVR 39 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~ 39 (93)
.-+.++|.+|+|||.||..+++ .+...-..++|++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~--~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAK--ELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHH--HHHHCCCeEEEEE
Confidence 3578999999999999999988 4443323445554
No 86
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.35 E-value=4.5e-07 Score=49.89 Aligned_cols=21 Identities=5% Similarity=-0.026 Sum_probs=19.3
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999885
No 87
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.34 E-value=7e-06 Score=52.66 Aligned_cols=23 Identities=13% Similarity=0.049 Sum_probs=20.7
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+++|+++|++|+||||++..++.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHH
Confidence 36899999999999999999876
No 88
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.33 E-value=4.5e-07 Score=53.16 Aligned_cols=22 Identities=23% Similarity=0.155 Sum_probs=20.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|.+|+|||||++.+..
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999987
No 89
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=98.33 E-value=2.4e-06 Score=53.25 Aligned_cols=55 Identities=9% Similarity=-0.031 Sum_probs=36.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccC----CCeeEEEEeCCCCCHHHHHHHHHHhhC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFY----FDCHAWVRVSISYDFRMVLDDIIKSVM 58 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~ll~~il~~l~ 58 (93)
.++.|.|.+|+|||+|+..++........ -..++|++....++... +.++++.+.
T Consensus 97 ~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~ 155 (316)
T TIGR02239 97 SITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYG 155 (316)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcC
Confidence 57789999999999999988752122111 12468888777777665 344455443
No 90
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.32 E-value=3e-06 Score=54.97 Aligned_cols=28 Identities=14% Similarity=-0.107 Sum_probs=22.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYF 32 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f 32 (93)
+-+.|+|++|+|||+|++.+.+ ++...+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~--~~~~~~ 176 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGN--YILEKN 176 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHHhC
Confidence 3478999999999999999998 555443
No 91
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=98.32 E-value=5e-06 Score=51.87 Aligned_cols=84 Identities=12% Similarity=0.067 Sum_probs=51.5
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHH
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRD 80 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~ 80 (93)
.+++-|.|+.|+||||||-.+.. ..+..-..++|+......++.. ++.++.....-.-.. .+.++..+.+..
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHHH
Confidence 46899999999999999999887 5554556788998877766533 344443221111111 455666666666
Q ss_pred hcCC-CeEEEEee
Q 037564 81 YLTN-KKYFIVLD 92 (93)
Q Consensus 81 ~L~~-kr~LlVlD 92 (93)
.++. .--++|+|
T Consensus 126 lirsg~~~lVVvD 138 (322)
T PF00154_consen 126 LIRSGAVDLVVVD 138 (322)
T ss_dssp HHHTTSESEEEEE
T ss_pred HhhcccccEEEEe
Confidence 6644 34588888
No 92
>PRK06526 transposase; Provisional
Probab=98.32 E-value=2.5e-06 Score=51.65 Aligned_cols=22 Identities=14% Similarity=-0.046 Sum_probs=19.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.-+.++|++|+|||+||..+..
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~ 120 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHH
Confidence 3578999999999999999877
No 93
>PRK04040 adenylate kinase; Provisional
Probab=98.32 E-value=6.9e-07 Score=51.81 Aligned_cols=24 Identities=8% Similarity=0.062 Sum_probs=21.7
Q ss_pred CCceeeEEcCCCCcHHHHHHHHhc
Q 037564 1 FSGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 1 ~~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+..+|+|+|++|+||||+++.+..
T Consensus 1 ~~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 1 MMKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 356899999999999999999988
No 94
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.32 E-value=8.4e-07 Score=50.00 Aligned_cols=35 Identities=9% Similarity=-0.264 Sum_probs=26.5
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEE
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWV 38 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv 38 (93)
+.+|.+.|.+|+||||||+.+.. ++...-....++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~L 36 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLL 36 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEe
Confidence 35889999999999999999998 665554444554
No 95
>PRK09183 transposase/IS protein; Provisional
Probab=98.31 E-value=6.1e-06 Score=50.11 Aligned_cols=22 Identities=18% Similarity=0.052 Sum_probs=19.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+.|+|++|+|||+||..+..
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~ 124 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGY 124 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 3577999999999999999976
No 96
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.31 E-value=4.9e-07 Score=52.99 Aligned_cols=22 Identities=23% Similarity=0.089 Sum_probs=20.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|++|+|||||++.+..
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 97
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=98.31 E-value=4.8e-06 Score=53.85 Aligned_cols=87 Identities=10% Similarity=0.116 Sum_probs=49.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCC-CCHHHHHHHHHHhhCCCCCCcc-c-cCCCH------HH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSIS-YDFRMVLDDIIKSVMPPSRVSV-I-IGEDY------QL 73 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~ll~~il~~l~~~~~~~~-~-~~~~~------~~ 73 (93)
..++|.|.+|+|||||++.+... .. .+..++.-+.+. ....++.+.++..-......-. . .+.+. -.
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~--~~--~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRG--TT--ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCE 238 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccC--CC--CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHH
Confidence 46899999999999999999872 22 245555556544 3445566665443211110000 0 00111 11
Q ss_pred HHHHHHHhc--CCCeEEEEeeC
Q 037564 74 KKSILRDYL--TNKKYFIVLDD 93 (93)
Q Consensus 74 l~~~l~~~L--~~kr~LlVlDD 93 (93)
..-.+-+++ +++++|+++||
T Consensus 239 ~A~tiAEyfrd~G~~VLl~~Ds 260 (444)
T PRK08972 239 TATTIAEYFRDQGLNVLLLMDS 260 (444)
T ss_pred HHHHHHHHHHHcCCCEEEEEcC
Confidence 122344555 67899999997
No 98
>PRK04195 replication factor C large subunit; Provisional
Probab=98.30 E-value=5.1e-06 Score=54.37 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=20.9
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+.+.|+|++|+||||+|+.+++
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~ 61 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAN 61 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999998
No 99
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.30 E-value=2.2e-06 Score=54.24 Aligned_cols=22 Identities=9% Similarity=0.007 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+-+.++|++|+|||++|+.+++
T Consensus 157 ~gvLL~GppGtGKT~lakaia~ 178 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLAKAVAH 178 (364)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999998
No 100
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.30 E-value=6.5e-07 Score=43.84 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=19.4
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+|+|.|.+|+||||+++.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999887
No 101
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.30 E-value=1.1e-05 Score=49.38 Aligned_cols=22 Identities=18% Similarity=0.095 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+++.++|++|+||||++.+++.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~ 94 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLAN 94 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 6889999999999999888876
No 102
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.30 E-value=1.6e-06 Score=49.94 Aligned_cols=22 Identities=14% Similarity=0.102 Sum_probs=19.8
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.|.|.|++|+||||+|+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999884
No 103
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.29 E-value=1.4e-05 Score=51.54 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.2
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+++++|+.|+||||+...+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999987765
No 104
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.29 E-value=7.6e-07 Score=50.90 Aligned_cols=23 Identities=13% Similarity=0.010 Sum_probs=21.3
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+++|.+.|++|+||||+|+.+..
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~ 24 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQS 24 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999887
No 105
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=98.29 E-value=4.1e-06 Score=57.44 Aligned_cols=83 Identities=12% Similarity=0.059 Sum_probs=51.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHHh
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRDY 81 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~~ 81 (93)
+++-|.|++|+|||||+.+++. .....-..++|+.....++.. .+++++.....-.-.. .+.+.....+...
T Consensus 61 siteI~G~~GsGKTtLal~~~~--~a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~~l 133 (790)
T PRK09519 61 RVIEIYGPESSGKTTVALHAVA--NAQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIADML 133 (790)
T ss_pred eEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHHHH
Confidence 5777999999999999988665 222233556888776666632 5566654321111111 4556666666666
Q ss_pred cCC-CeEEEEee
Q 037564 82 LTN-KKYFIVLD 92 (93)
Q Consensus 82 L~~-kr~LlVlD 92 (93)
++. +--|+|+|
T Consensus 134 v~~~~~~LVVID 145 (790)
T PRK09519 134 IRSGALDIVVID 145 (790)
T ss_pred hhcCCCeEEEEc
Confidence 644 44578888
No 106
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.28 E-value=1.3e-06 Score=50.98 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=20.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
++|.|.|+.|+||||++..+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~ 23 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMID 23 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998776
No 107
>PTZ00035 Rad51 protein; Provisional
Probab=98.28 E-value=1e-05 Score=50.84 Aligned_cols=55 Identities=5% Similarity=-0.029 Sum_probs=36.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCccccc----CCCeeEEEEeCCCCCHHHHHHHHHHhhC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKF----YFDCHAWVRVSISYDFRMVLDDIIKSVM 58 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~ll~~il~~l~ 58 (93)
.++.|+|.+|+|||+|+..++-..++.. .-..++|+.....+++.. +.++++.+.
T Consensus 119 ~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g 177 (337)
T PTZ00035 119 SITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFG 177 (337)
T ss_pred eEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhC
Confidence 5778999999999999998875322211 112456888777667665 344455543
No 108
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.28 E-value=8.8e-07 Score=51.13 Aligned_cols=25 Identities=12% Similarity=0.046 Sum_probs=22.1
Q ss_pred CCceeeEEcCCCCcHHHHHHHHhcC
Q 037564 1 FSGCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 1 ~~~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
++.++.|.|++|+|||||++.+...
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999773
No 109
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.28 E-value=2.8e-06 Score=46.67 Aligned_cols=42 Identities=7% Similarity=-0.009 Sum_probs=29.3
Q ss_pred eeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHH
Q 037564 5 KPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLD 51 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~ 51 (93)
|.++|++|+|||+||+.+++ ... .....+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~--~~~---~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAA--LLG---RPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHH--HHT---CEEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHH--Hhh---cceEEEEecccccccccee
Confidence 57899999999999999988 331 1223456677777666543
No 110
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.28 E-value=1.1e-05 Score=52.22 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=20.0
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++.++|++|+||||++..++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999998888776
No 111
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.27 E-value=2.6e-05 Score=47.37 Aligned_cols=49 Identities=6% Similarity=-0.098 Sum_probs=32.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccC-CCeeEEEEeCCCCCHHHHHHHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFY-FDCHAWVRVSISYDFRMVLDDIIK 55 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~ll~~il~ 55 (93)
.++.|.|.+|+||||++.+++. ..... -..+.|+++.. +..++...+..
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~--~~~~~~g~~vl~iS~E~--~~~~~~~r~~~ 80 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYAL--DLITQHGVRVGTISLEE--PVVRTARRLLG 80 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHH--HHHHhcCceEEEEEccc--CHHHHHHHHHH
Confidence 5788999999999999999877 33222 24567777654 33444444433
No 112
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.27 E-value=9.8e-06 Score=49.21 Aligned_cols=22 Identities=9% Similarity=0.051 Sum_probs=20.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++++|.+|+||||+++.+..
T Consensus 40 e~~glVGESG~GKSTlgr~i~~ 61 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILG 61 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHc
Confidence 4789999999999999999988
No 113
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.27 E-value=6.7e-07 Score=51.99 Aligned_cols=21 Identities=19% Similarity=0.124 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+|+|.|++|+|||||++.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 114
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.27 E-value=5.5e-06 Score=53.35 Aligned_cols=22 Identities=14% Similarity=-0.029 Sum_probs=20.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.++.++|++|+||||++.+++.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999886
No 115
>PRK06696 uridine kinase; Validated
Probab=98.27 E-value=1.8e-06 Score=51.16 Aligned_cols=22 Identities=18% Similarity=0.061 Sum_probs=20.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|.+|+||||+|+.+..
T Consensus 23 ~iI~I~G~sgsGKSTlA~~L~~ 44 (223)
T PRK06696 23 LRVAIDGITASGKTTFADELAE 44 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999987
No 116
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.27 E-value=3.2e-06 Score=53.65 Aligned_cols=23 Identities=9% Similarity=-0.081 Sum_probs=21.4
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
++.++|||++|.|||.+|+.++.
T Consensus 148 PlgllL~GPPGcGKTllAraiA~ 170 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFK 170 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHH
Confidence 46789999999999999999999
No 117
>PRK08149 ATP synthase SpaL; Validated
Probab=98.26 E-value=1.3e-05 Score=51.85 Aligned_cols=87 Identities=14% Similarity=0.129 Sum_probs=48.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeC-CCCCHHHHHHHHHHhhCCCCCCcc--ccCC------CHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVS-ISYDFRMVLDDIIKSVMPPSRVSV--IIGE------DYQL 73 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~ll~~il~~l~~~~~~~~--~~~~------~~~~ 73 (93)
..++|.|.+|+|||||+..++... .-+..++..+. +..+..++....+.........-. ..+. ....
T Consensus 152 q~i~I~G~sG~GKTTLl~~i~~~~----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~ 227 (428)
T PRK08149 152 QRMGIFASAGCGKTSLMNMLIEHS----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAAL 227 (428)
T ss_pred CEEEEECCCCCChhHHHHHHhcCC----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHH
Confidence 468999999999999999988732 12233333343 344556666666654321111000 0001 1112
Q ss_pred HHHHHHHhc--CCCeEEEEeeC
Q 037564 74 KKSILRDYL--TNKKYFIVLDD 93 (93)
Q Consensus 74 l~~~l~~~L--~~kr~LlVlDD 93 (93)
..-.+-+++ ++|++|+++||
T Consensus 228 ~a~tiAE~fr~~G~~Vll~~Ds 249 (428)
T PRK08149 228 VATTVAEYFRDQGKRVVLFIDS 249 (428)
T ss_pred HHHHHHHHHHHcCCCEEEEccc
Confidence 223344454 58999999997
No 118
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.26 E-value=1.7e-05 Score=50.71 Aligned_cols=23 Identities=9% Similarity=-0.019 Sum_probs=20.6
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++.++|+.|+||||++..+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36889999999999999998886
No 119
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.26 E-value=1.5e-05 Score=51.01 Aligned_cols=23 Identities=13% Similarity=0.046 Sum_probs=20.5
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+++|.++|+.|+||||.+.+++.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~ 196 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988876
No 120
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.26 E-value=1.4e-05 Score=47.61 Aligned_cols=47 Identities=6% Similarity=-0.128 Sum_probs=32.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDI 53 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i 53 (93)
.++.|.|.+|+|||+++.++.. .....=..+.|++..+ ++.++++++
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~--~~~~~g~~~~y~~~e~--~~~~~~~~~ 72 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVY--GALKQGKKVYVITTEN--TSKSYLKQM 72 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHH--HHHhCCCEEEEEEcCC--CHHHHHHHH
Confidence 5788999999999999999865 2212234567777754 345555553
No 121
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.25 E-value=3.7e-06 Score=51.32 Aligned_cols=22 Identities=9% Similarity=-0.108 Sum_probs=17.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..|.|+|.+|+||||+|+++..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~ 23 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKK 23 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHH
Confidence 3688999999999999999887
No 122
>PRK03839 putative kinase; Provisional
Probab=98.25 E-value=7.8e-07 Score=50.99 Aligned_cols=21 Identities=14% Similarity=0.055 Sum_probs=19.6
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.|.|.|++|+||||+++.+++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999988
No 123
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.25 E-value=5e-06 Score=53.13 Aligned_cols=22 Identities=9% Similarity=0.007 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+-|.++|++|+|||++|+.+++
T Consensus 166 ~gvLL~GppGtGKT~lAkaia~ 187 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAVAH 187 (389)
T ss_pred CceEEECCCCCChHHHHHHHHH
Confidence 3478899999999999999998
No 124
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.25 E-value=1.3e-06 Score=51.61 Aligned_cols=37 Identities=5% Similarity=-0.041 Sum_probs=26.1
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEe
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRV 40 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~ 40 (93)
.+.+.++|++|+|||+||+.+++ .........+|+++
T Consensus 38 ~~~lll~G~~G~GKT~la~~~~~--~~~~~~~~~~~i~~ 74 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQAACA--AAEERGKSAIYLPL 74 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHhcCCcEEEEeH
Confidence 35688999999999999999987 33322333445543
No 125
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=98.25 E-value=9.7e-06 Score=49.70 Aligned_cols=85 Identities=13% Similarity=0.022 Sum_probs=52.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHh-h---CCCCCCccccCCCHHHHHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKS-V---MPPSRVSVIIGEDYQLKKSIL 78 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~-l---~~~~~~~~~~~~~~~~l~~~l 78 (93)
+++=|+|+.|+||||+|-+++- ..+..-..++|+.-...+++..+ .++... + ....+... .....+++.+
T Consensus 61 ~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~-~~l~~~~~d~l~v~~~~~~---e~q~~i~~~~ 134 (279)
T COG0468 61 RITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERA-KQLGVDLLDNLLVSQPDTG---EQQLEIAEKL 134 (279)
T ss_pred eEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHH-HHHHHhhhcceeEecCCCH---HHHHHHHHHH
Confidence 5778999999999999999887 33333447889998888887654 334443 2 11111111 2333444555
Q ss_pred HHhcCCCeEEEEeeC
Q 037564 79 RDYLTNKKYFIVLDD 93 (93)
Q Consensus 79 ~~~L~~kr~LlVlDD 93 (93)
.....++--|+|+|.
T Consensus 135 ~~~~~~~i~LvVVDS 149 (279)
T COG0468 135 ARSGAEKIDLLVVDS 149 (279)
T ss_pred HHhccCCCCEEEEec
Confidence 555544345888873
No 126
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.24 E-value=1.9e-05 Score=51.11 Aligned_cols=87 Identities=14% Similarity=0.154 Sum_probs=48.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCC-CCCHHHHHHHHHHhhCCCCCCcc--ccC-CCHHH-----
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSI-SYDFRMVLDDIIKSVMPPSRVSV--IIG-EDYQL----- 73 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~il~~l~~~~~~~~--~~~-~~~~~----- 73 (93)
..++|.|.+|+|||||++.+... . +.+...+..+.+ .....+++.+....-........ ..+ ...+.
T Consensus 156 qrigI~G~sG~GKSTLL~~I~~~--~--~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~~ 231 (433)
T PRK07594 156 QRVGIFSAPGVGKSTLLAMLCNA--P--DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALF 231 (433)
T ss_pred CEEEEECCCCCCccHHHHHhcCC--C--CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHHH
Confidence 57899999999999999988873 2 234455555554 34445666655431110000000 001 11111
Q ss_pred HHHHHHHhc--CCCeEEEEeeC
Q 037564 74 KKSILRDYL--TNKKYFIVLDD 93 (93)
Q Consensus 74 l~~~l~~~L--~~kr~LlVlDD 93 (93)
..-.+-+++ +++++|+++||
T Consensus 232 ~a~tiAEyfrd~G~~VLl~~Ds 253 (433)
T PRK07594 232 VATTIAEFFRDNGKRVVLLADS 253 (433)
T ss_pred HHHHHHHHHHHCCCcEEEEEeC
Confidence 122345555 57899999997
No 127
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=98.24 E-value=5e-06 Score=50.35 Aligned_cols=48 Identities=15% Similarity=0.008 Sum_probs=37.6
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHH
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDI 53 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i 53 (93)
.+++.|.|.+|+|||+++.++.. +.......++|++..+. ..++++.+
T Consensus 23 g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~--~~~l~~~~ 70 (260)
T COG0467 23 GSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES--PEELLENA 70 (260)
T ss_pred CcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC--HHHHHHHH
Confidence 36889999999999999999998 66666888999987764 34444444
No 128
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.24 E-value=1.2e-06 Score=50.08 Aligned_cols=23 Identities=13% Similarity=0.031 Sum_probs=21.1
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+|+|+|++|+|||||++.+..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHc
Confidence 36899999999999999999988
No 129
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.24 E-value=1.1e-05 Score=53.44 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=20.5
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.++++++|++|+||||++.++..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999988876
No 130
>PRK06893 DNA replication initiation factor; Validated
Probab=98.23 E-value=1.3e-06 Score=52.02 Aligned_cols=37 Identities=16% Similarity=0.084 Sum_probs=27.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVS 41 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~ 41 (93)
+.+.++|++|+|||+|+..+++ +.........|+.+.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~--~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSN--HYLLNQRTAIYIPLS 76 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEeeHH
Confidence 4578999999999999999998 443333345666654
No 131
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.22 E-value=1.1e-05 Score=51.81 Aligned_cols=22 Identities=9% Similarity=0.016 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+-+.++|++|+|||+||+.+++
T Consensus 180 kgvLL~GppGTGKT~LAkalA~ 201 (398)
T PTZ00454 180 RGVLLYGPPGTGKTMLAKAVAH 201 (398)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999998
No 132
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.22 E-value=1.2e-06 Score=50.10 Aligned_cols=22 Identities=9% Similarity=-0.028 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.++.|.|++|+||||+++.+..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998866
No 133
>PRK06547 hypothetical protein; Provisional
Probab=98.22 E-value=1.2e-06 Score=50.24 Aligned_cols=23 Identities=17% Similarity=-0.074 Sum_probs=20.7
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.+|+|.|++|+||||+|+.+..
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~ 37 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAA 37 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 134
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.22 E-value=2e-05 Score=49.39 Aligned_cols=87 Identities=13% Similarity=0.163 Sum_probs=48.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeC-CCCCHHHHHHHHHHhhCCCCCCcc--ccCC------CHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVS-ISYDFRMVLDDIIKSVMPPSRVSV--IIGE------DYQL 73 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~ll~~il~~l~~~~~~~~--~~~~------~~~~ 73 (93)
..++|.|.+|.|||||.+.+... ... +...+..+. +.....++....+..-......-. ..+. ....
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~--~~~--~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~ 145 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARG--TTA--DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAY 145 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCC--CCC--CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHH
Confidence 47899999999999999998873 221 234444444 344556666555543221110000 0001 1111
Q ss_pred HHHHHHHhc--CCCeEEEEeeC
Q 037564 74 KKSILRDYL--TNKKYFIVLDD 93 (93)
Q Consensus 74 l~~~l~~~L--~~kr~LlVlDD 93 (93)
..-.+-+++ ++|.+|+++||
T Consensus 146 ~a~~~AEyfr~~g~~Vll~~Ds 167 (326)
T cd01136 146 TATAIAEYFRDQGKDVLLLMDS 167 (326)
T ss_pred HHHHHHHHHHHcCCCeEEEecc
Confidence 222344444 57899999997
No 135
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.22 E-value=1.8e-05 Score=51.41 Aligned_cols=88 Identities=11% Similarity=0.112 Sum_probs=45.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCC------CCccccC-CCHHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPS------RVSVIIG-EDYQLKK 75 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~------~~~~~~~-~~~~~l~ 75 (93)
..++|.|.+|+|||||++.+... .. .....++..-.+..+..++....+....... ....... ...-...
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l--~~-pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a 242 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARA--DA-FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTA 242 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC--CC-CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 47899999999999999988762 21 1222333322234455555554444331110 0000000 0011122
Q ss_pred HHHHHhc--CCCeEEEEeeC
Q 037564 76 SILRDYL--TNKKYFIVLDD 93 (93)
Q Consensus 76 ~~l~~~L--~~kr~LlVlDD 93 (93)
-.+-+++ +++++|+++||
T Consensus 243 ~~iAEyfrd~G~~Vll~~Ds 262 (450)
T PRK06002 243 TAIAEYFRDRGENVLLIVDS 262 (450)
T ss_pred HHHHHHHHHcCCCEEEeccc
Confidence 2344444 57899999997
No 136
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.21 E-value=2.4e-05 Score=49.86 Aligned_cols=83 Identities=6% Similarity=-0.024 Sum_probs=45.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHHh
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRDY 81 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~~ 81 (93)
.++.|.|.+|+|||||+.+++. .....-...+|++... +..++... +++++.......-.. .+.+.+.+.+.+
T Consensus 83 slvLI~G~pG~GKStLllq~a~--~~a~~g~~VlYvs~EE--s~~qi~~R-a~rlg~~~~~l~l~~e~~le~I~~~i~~- 156 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAA--RLAKRGGKVLYVSGEE--SPEQIKLR-ADRLGISTENLYLLAETNLEDILASIEE- 156 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEEEECCc--CHHHHHHH-HHHcCCCcccEEEEccCcHHHHHHHHHh-
Confidence 5788999999999999999887 3333334566766543 33333222 334442211100011 344555544432
Q ss_pred cCCCeEEEEeeC
Q 037564 82 LTNKKYFIVLDD 93 (93)
Q Consensus 82 L~~kr~LlVlDD 93 (93)
.+.-++|+|.
T Consensus 157 --~~~~lVVIDS 166 (372)
T cd01121 157 --LKPDLVIIDS 166 (372)
T ss_pred --cCCcEEEEcc
Confidence 3455788884
No 137
>PRK14974 cell division protein FtsY; Provisional
Probab=98.21 E-value=1.5e-05 Score=50.05 Aligned_cols=23 Identities=13% Similarity=-0.058 Sum_probs=20.0
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+|.++|++|+||||++.+++.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999998887776
No 138
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=98.20 E-value=1.8e-05 Score=49.86 Aligned_cols=55 Identities=7% Similarity=-0.015 Sum_probs=38.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccC----CCeeEEEEeCCCCCHHHHHHHHHHhhC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFY----FDCHAWVRVSISYDFRMVLDDIIKSVM 58 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~ll~~il~~l~ 58 (93)
.++-|.|.+|+|||+|+..++-....... -..++|++....+++..+ .++++.+.
T Consensus 124 ~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~ 182 (342)
T PLN03186 124 SITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFG 182 (342)
T ss_pred eEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcC
Confidence 46779999999999999887742222111 125789998888887665 45566554
No 139
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.20 E-value=1.4e-06 Score=49.94 Aligned_cols=23 Identities=9% Similarity=-0.059 Sum_probs=20.7
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+|.|.|++|+||||+|+.+..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999886
No 140
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.19 E-value=4.4e-06 Score=50.00 Aligned_cols=37 Identities=5% Similarity=0.046 Sum_probs=26.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVS 41 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~ 41 (93)
+.+.++|++|+|||+|+..+++ .....-....|+++.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~--~~~~~~~~v~y~~~~ 82 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACA--ELSQRGRAVGYVPLD 82 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEEHH
Confidence 4678999999999999999887 333222234555554
No 141
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.19 E-value=1.5e-06 Score=49.16 Aligned_cols=23 Identities=4% Similarity=-0.132 Sum_probs=20.9
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
...|.+.|++|+||||+|+.+..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~ 26 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAK 26 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHH
Confidence 45789999999999999999988
No 142
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=98.19 E-value=3e-06 Score=47.43 Aligned_cols=67 Identities=6% Similarity=-0.003 Sum_probs=38.6
Q ss_pred eeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYLT 83 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L~ 83 (93)
-|.|.|-+|+||||++.++.. . +. .-|+++++-....++....-+... ..+ .+.+.+.+.|...+.
T Consensus 9 NILvtGTPG~GKstl~~~lae--~----~~-~~~i~isd~vkEn~l~~gyDE~y~----c~i---~DEdkv~D~Le~~m~ 74 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAE--K----TG-LEYIEISDLVKENNLYEGYDEEYK----CHI---LDEDKVLDELEPLMI 74 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHH--H----hC-CceEehhhHHhhhcchhccccccc----Ccc---ccHHHHHHHHHHHHh
Confidence 478999999999999999986 2 11 235555543332222222111111 112 567777777776664
Q ss_pred C
Q 037564 84 N 84 (93)
Q Consensus 84 ~ 84 (93)
.
T Consensus 75 ~ 75 (176)
T KOG3347|consen 75 E 75 (176)
T ss_pred c
Confidence 3
No 143
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.18 E-value=2.5e-05 Score=49.98 Aligned_cols=82 Identities=10% Similarity=-0.042 Sum_probs=40.6
Q ss_pred CceeeEEcCCCCcHHH-HHHHHhcCcccccCCCeeEEEEeCCCCC-HHHHHHHHHHhhCCCCCCccccCCCHHHHHHHHH
Q 037564 2 SGCKPILDSSSFDKTA-FTADTYNNNHVKFYFDCHAWVRVSISYD-FRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILR 79 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTt-La~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 79 (93)
.++|.++|+.|+|||| ||+..+... ....=..+..++.....- ..+-++.-++-++.+... . .+..++...+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~-~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~v-v---~~~~el~~ai~ 277 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYV-MLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEV-V---YSPKELAEAIE 277 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH-hhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEE-e---cCHHHHHHHHH
Confidence 5799999999999996 555433311 111122344555544332 233333333333433211 1 45555655554
Q ss_pred HhcCCCeEEE
Q 037564 80 DYLTNKKYFI 89 (93)
Q Consensus 80 ~~L~~kr~Ll 89 (93)
. |++++++|
T Consensus 278 ~-l~~~d~IL 286 (407)
T COG1419 278 A-LRDCDVIL 286 (407)
T ss_pred H-hhcCCEEE
Confidence 3 44555444
No 144
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.18 E-value=8.3e-06 Score=53.07 Aligned_cols=21 Identities=24% Similarity=0.110 Sum_probs=19.4
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-+.|+|..|+|||+|++.+.+
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~ 163 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKN 163 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999988
No 145
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.18 E-value=1.3e-06 Score=50.05 Aligned_cols=21 Identities=14% Similarity=0.033 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+|.|.|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999887
No 146
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.18 E-value=1.7e-06 Score=50.45 Aligned_cols=24 Identities=8% Similarity=-0.015 Sum_probs=21.5
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcC
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
..+|+|+|++|+|||||++.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999873
No 147
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.18 E-value=9.7e-06 Score=48.75 Aligned_cols=22 Identities=9% Similarity=0.087 Sum_probs=19.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.-+.+||..|+|||++++.+.+
T Consensus 53 nnvLL~G~rGtGKSSlVkall~ 74 (249)
T PF05673_consen 53 NNVLLWGARGTGKSSLVKALLN 74 (249)
T ss_pred cceEEecCCCCCHHHHHHHHHH
Confidence 4567899999999999999988
No 148
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.18 E-value=3e-06 Score=48.86 Aligned_cols=24 Identities=8% Similarity=0.044 Sum_probs=21.5
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcC
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
..++.|.|++|+||+||++.++.+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 457899999999999999999984
No 149
>PRK13975 thymidylate kinase; Provisional
Probab=98.18 E-value=1.7e-06 Score=50.08 Aligned_cols=24 Identities=8% Similarity=-0.154 Sum_probs=22.0
Q ss_pred CCceeeEEcCCCCcHHHHHHHHhc
Q 037564 1 FSGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 1 ~~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
|...|.|.|+.|+||||+++.+..
T Consensus 1 m~~~I~ieG~~GsGKtT~~~~L~~ 24 (196)
T PRK13975 1 MNKFIVFEGIDGSGKTTQAKLLAE 24 (196)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999988
No 150
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.17 E-value=3.2e-06 Score=48.68 Aligned_cols=34 Identities=9% Similarity=-0.040 Sum_probs=27.2
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEE
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAW 37 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~w 37 (93)
.+++.|+|++|+|||||++.+.. ...+.|...+.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~ 35 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVS 35 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hccccccccee
Confidence 57899999999999999999988 55556643333
No 151
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.17 E-value=1.5e-06 Score=47.92 Aligned_cols=21 Identities=10% Similarity=-0.072 Sum_probs=19.6
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+|.|.|++|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999887
No 152
>PRK00625 shikimate kinase; Provisional
Probab=98.17 E-value=1.5e-06 Score=49.81 Aligned_cols=21 Identities=14% Similarity=0.041 Sum_probs=19.2
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.|.++||+|+||||+++.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999977
No 153
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.17 E-value=3.4e-05 Score=52.97 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.6
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.++++++|+.|+||||.+.+++.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 36899999999999999988887
No 154
>PRK07667 uridine kinase; Provisional
Probab=98.16 E-value=1.8e-06 Score=50.20 Aligned_cols=22 Identities=27% Similarity=0.043 Sum_probs=20.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|.+|+||||+|+.+..
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~ 39 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKE 39 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4889999999999999999887
No 155
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.15 E-value=1.8e-06 Score=48.00 Aligned_cols=21 Identities=10% Similarity=0.017 Sum_probs=19.2
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
++.+.|++|+||||+|+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHh
Confidence 478999999999999999887
No 156
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.15 E-value=1.7e-05 Score=48.92 Aligned_cols=22 Identities=14% Similarity=-0.079 Sum_probs=19.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-+|+|.|.+|+||||+|+.+..
T Consensus 63 ~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 63 YIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999987654
No 157
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=98.15 E-value=7.6e-06 Score=48.46 Aligned_cols=50 Identities=12% Similarity=0.163 Sum_probs=35.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCC-CCHHHHHHHHHHh
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSIS-YDFRMVLDDIIKS 56 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~ll~~il~~ 56 (93)
.-++|.|.+|+|||+|+..+.++ .. -+..+++.+.+. ....++.+++...
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~--~~--~d~~V~~~iGer~~Ev~~~~~~~~~~ 66 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANN--QD--ADVVVYALIGERGREVTEFIEELKGE 66 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH--CT--TTEEEEEEESECHHHHHHHHHHHHHT
T ss_pred CEEEEEcCcccccchhhHHHHhc--cc--ccceeeeeccccchhHHHHHHHHhhc
Confidence 45789999999999999999883 22 234477777654 4556666666543
No 158
>PRK06217 hypothetical protein; Validated
Probab=98.15 E-value=1.8e-06 Score=49.77 Aligned_cols=22 Identities=18% Similarity=0.037 Sum_probs=20.0
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.|.|.|.+|+||||+|+.+...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999874
No 159
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.14 E-value=2.6e-06 Score=47.06 Aligned_cols=21 Identities=10% Similarity=0.058 Sum_probs=19.4
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.|+|+|++|+|||||++.+..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~ 21 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLE 21 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999988
No 160
>PRK06936 type III secretion system ATPase; Provisional
Probab=98.14 E-value=3e-05 Score=50.26 Aligned_cols=87 Identities=11% Similarity=0.144 Sum_probs=49.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCC-CCHHHHHHHHHHhhCCCCCCcc-cc-CCCHHH------
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSIS-YDFRMVLDDIIKSVMPPSRVSV-II-GEDYQL------ 73 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~ll~~il~~l~~~~~~~~-~~-~~~~~~------ 73 (93)
..++|.|.+|+|||||...+++. .. -+.+++.-+.+. ....++.+..+..-......-. .. +.+...
T Consensus 163 q~~~I~G~sG~GKStLl~~Ia~~--~~--~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~ 238 (439)
T PRK06936 163 QRMGIFAAAGGGKSTLLASLIRS--AE--VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGF 238 (439)
T ss_pred CEEEEECCCCCChHHHHHHHhcC--CC--CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHH
Confidence 47899999999999999999883 22 245667767554 4445555554432111110000 00 011111
Q ss_pred HHHHHHHhc--CCCeEEEEeeC
Q 037564 74 KKSILRDYL--TNKKYFIVLDD 93 (93)
Q Consensus 74 l~~~l~~~L--~~kr~LlVlDD 93 (93)
..-.+-+++ +++++|+++||
T Consensus 239 ~a~tiAEyfrd~G~~Vll~~Ds 260 (439)
T PRK06936 239 VATSIAEYFRDQGKRVLLLMDS 260 (439)
T ss_pred HHHHHHHHHHHcCCCEEEeccc
Confidence 112344554 57999999997
No 161
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=98.13 E-value=2.2e-05 Score=51.20 Aligned_cols=90 Identities=13% Similarity=0.157 Sum_probs=51.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCC-CCCHHHHHHHHHHhhCCCCCCcc-c-cCC-CHH-----H
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSI-SYDFRMVLDDIIKSVMPPSRVSV-I-IGE-DYQ-----L 73 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~il~~l~~~~~~~~-~-~~~-~~~-----~ 73 (93)
.-++|.|.+|+|||||+..+....... +=+.++++-+.+ .....++++++...-......-. . .+. ... .
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~ 223 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVAL 223 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 457899999999999999876632211 113566766654 44556677777654221111000 0 011 111 1
Q ss_pred HHHHHHHhc---CCCeEEEEeeC
Q 037564 74 KKSILRDYL---TNKKYFIVLDD 93 (93)
Q Consensus 74 l~~~l~~~L---~~kr~LlVlDD 93 (93)
..-.+-+++ +++++|+++||
T Consensus 224 ~a~tiAEyfrd~~G~~VLll~Ds 246 (463)
T PRK09280 224 TGLTMAEYFRDVEGQDVLLFIDN 246 (463)
T ss_pred HHHHHHHHHHHhcCCceEEEecc
Confidence 223366666 56899999997
No 162
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.13 E-value=3.8e-05 Score=50.01 Aligned_cols=83 Identities=10% Similarity=0.049 Sum_probs=45.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHHh
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRDY 81 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~~ 81 (93)
.++.|.|.+|+|||||+.+++. .....-..++|++... +..++... ++.++.......-.. .+.+.+.+.+.+
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~--~~a~~g~~vlYvs~Ee--s~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~~- 154 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAA--RLAAAGGKVLYVSGEE--SASQIKLR-AERLGLPSDNLYLLAETNLEAILATIEE- 154 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEEccc--cHHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHHh-
Confidence 4778999999999999999987 3332223456766543 33444333 344442211100011 445555554433
Q ss_pred cCCCeEEEEeeC
Q 037564 82 LTNKKYFIVLDD 93 (93)
Q Consensus 82 L~~kr~LlVlDD 93 (93)
.+.-++|+|.
T Consensus 155 --~~~~lVVIDS 164 (446)
T PRK11823 155 --EKPDLVVIDS 164 (446)
T ss_pred --hCCCEEEEec
Confidence 2444788883
No 163
>PRK13947 shikimate kinase; Provisional
Probab=98.13 E-value=2e-06 Score=48.83 Aligned_cols=21 Identities=10% Similarity=-0.045 Sum_probs=19.3
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-|.|.|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 378999999999999999988
No 164
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.13 E-value=2.5e-05 Score=50.50 Aligned_cols=23 Identities=9% Similarity=-0.076 Sum_probs=20.6
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+++|.++|++|+||||++.+++.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998876
No 165
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.13 E-value=3.4e-05 Score=49.83 Aligned_cols=87 Identities=16% Similarity=0.166 Sum_probs=47.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeC-CCCCHHHHHHHHHHhhCCCCCCcc--ccC-CCHHH-----
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVS-ISYDFRMVLDDIIKSVMPPSRVSV--IIG-EDYQL----- 73 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~ll~~il~~l~~~~~~~~--~~~-~~~~~----- 73 (93)
..++|.|.+|+|||||++.+... ... +......+. +.....++.+..+..-......-+ ..+ .....
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~--~~~--~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~ 216 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARN--TDA--DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAY 216 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCC--CCC--CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHH
Confidence 47899999999999999988873 221 223333333 344455555554443221110000 001 11111
Q ss_pred HHHHHHHhc--CCCeEEEEeeC
Q 037564 74 KKSILRDYL--TNKKYFIVLDD 93 (93)
Q Consensus 74 l~~~l~~~L--~~kr~LlVlDD 93 (93)
..-.+-+++ +++++|+++||
T Consensus 217 ~a~~iAEyfrd~G~~Vll~~Ds 238 (418)
T TIGR03498 217 TATAIAEYFRDQGKDVLLLMDS 238 (418)
T ss_pred HHHHHHHHHHHcCCCEEEeccc
Confidence 222355555 57899999997
No 166
>PRK05642 DNA replication initiation factor; Validated
Probab=98.13 E-value=6.7e-06 Score=49.21 Aligned_cols=36 Identities=0% Similarity=-0.036 Sum_probs=25.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEe
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRV 40 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~ 40 (93)
+.+.|+|.+|+|||.|++.+++ +....-..++|++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~--~~~~~~~~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACL--RFEQRGEPAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHhCCCcEEEeeH
Confidence 4578999999999999999987 33322233556654
No 167
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.12 E-value=4e-05 Score=47.90 Aligned_cols=22 Identities=9% Similarity=-0.026 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++++|++|+||||++..++.
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 5899999999999999998877
No 168
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.12 E-value=2.1e-05 Score=50.69 Aligned_cols=87 Identities=14% Similarity=0.179 Sum_probs=46.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCC-CCHHHHHHHHHHhhCCCCCCcc-c-cCC-CH-----HH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSIS-YDFRMVLDDIIKSVMPPSRVSV-I-IGE-DY-----QL 73 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~ll~~il~~l~~~~~~~~-~-~~~-~~-----~~ 73 (93)
..++|.|.+|+|||||+..+... .. -+..++..+.+. ....++.+.....-......-+ . .+. .. -.
T Consensus 138 q~~~I~G~sG~GKTtLl~~I~~~--~~--~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~ 213 (411)
T TIGR03496 138 QRMGIFAGSGVGKSTLLGMMARY--TE--ADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAF 213 (411)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC--CC--CCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHH
Confidence 46899999999999999988873 22 133344445443 3445555554433111100000 0 001 11 11
Q ss_pred HHHHHHHhc--CCCeEEEEeeC
Q 037564 74 KKSILRDYL--TNKKYFIVLDD 93 (93)
Q Consensus 74 l~~~l~~~L--~~kr~LlVlDD 93 (93)
..-.+-+++ +++++|+++||
T Consensus 214 ~a~tiAEyfr~~G~~Vll~~Ds 235 (411)
T TIGR03496 214 YATAIAEYFRDQGKDVLLLMDS 235 (411)
T ss_pred HHHHHHHHHHHCCCCEEEEEeC
Confidence 122344454 57899999997
No 169
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=98.12 E-value=2.5e-05 Score=50.69 Aligned_cols=87 Identities=15% Similarity=0.134 Sum_probs=48.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCC-CCCHHHHHHHHHHhhCCCCCCcc-c-cCC-CH-----HH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSI-SYDFRMVLDDIIKSVMPPSRVSV-I-IGE-DY-----QL 73 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~il~~l~~~~~~~~-~-~~~-~~-----~~ 73 (93)
..++|.|.+|+|||||++.+... .. -+..++.-+.+ .....++.+..+..-......-. . .+. .. -.
T Consensus 159 qri~I~G~sG~GKTtLL~~I~~~--~~--~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~ 234 (442)
T PRK08927 159 QRMGIFAGSGVGKSVLLSMLARN--AD--ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAY 234 (442)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc--cC--CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHH
Confidence 57899999999999999998873 22 23445555544 34455666555443221110000 0 001 11 11
Q ss_pred HHHHHHHhc--CCCeEEEEeeC
Q 037564 74 KKSILRDYL--TNKKYFIVLDD 93 (93)
Q Consensus 74 l~~~l~~~L--~~kr~LlVlDD 93 (93)
..-.+-+++ +++++|+++||
T Consensus 235 ~a~tiAEyfrd~G~~Vll~~Ds 256 (442)
T PRK08927 235 LTLAIAEYFRDQGKDVLCLMDS 256 (442)
T ss_pred HHHHHHHHHHHCCCcEEEEEeC
Confidence 222345555 57899999997
No 170
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=98.12 E-value=3.5e-05 Score=47.18 Aligned_cols=91 Identities=18% Similarity=0.191 Sum_probs=53.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCccc--ccCCCeeEEEEeCCCC-CHHHHHHHHHHhhCCCCCCcc--ccC-CCH-----
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHV--KFYFDCHAWVRVSISY-DFRMVLDDIIKSVMPPSRVSV--IIG-EDY----- 71 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~--~~~f~~~~wv~~~~~~-~~~~ll~~il~~l~~~~~~~~--~~~-~~~----- 71 (93)
.-++|.|.+|+|||+|+..+.++..+ +.+-+.++++-+.+.. ...++.+++.+.-......-. ..+ ...
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 45789999999999999998874321 1224678888887654 556677666654221110000 000 111
Q ss_pred HHHHHHHHHhc--C-CCeEEEEeeC
Q 037564 72 QLKKSILRDYL--T-NKKYFIVLDD 93 (93)
Q Consensus 72 ~~l~~~l~~~L--~-~kr~LlVlDD 93 (93)
--..-.+-+++ + ++++|+++||
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~ 174 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTD 174 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcC
Confidence 11123355565 3 6899999997
No 171
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=98.12 E-value=1.1e-05 Score=52.53 Aligned_cols=90 Identities=16% Similarity=0.158 Sum_probs=52.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCC-CCCHHHHHHHHHHhhCCCCCCcc-cc-CC------CHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSI-SYDFRMVLDDIIKSVMPPSRVSV-II-GE------DYQL 73 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~il~~l~~~~~~~~-~~-~~------~~~~ 73 (93)
.-++|.|.+|+|||||+..+...... .+-+.++++-+.+ .....++.+.+...-......-+ .. +. ..-.
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~ 222 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVL 222 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHH
Confidence 46799999999999999888874221 2446677776654 34556677766653221111000 00 01 1112
Q ss_pred HHHHHHHhc--C-CCeEEEEeeC
Q 037564 74 KKSILRDYL--T-NKKYFIVLDD 93 (93)
Q Consensus 74 l~~~l~~~L--~-~kr~LlVlDD 93 (93)
..-.+-+++ + ++++|+++||
T Consensus 223 ~a~tiAEyfrd~~G~~VLl~~Ds 245 (461)
T PRK12597 223 TGLTIAEYLRDEEKEDVLLFIDN 245 (461)
T ss_pred HHHHHHHHHHHhcCCceEEEecc
Confidence 233455665 3 7899999997
No 172
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.11 E-value=1.1e-05 Score=46.54 Aligned_cols=21 Identities=10% Similarity=-0.130 Sum_probs=19.8
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+|+|.|+.|+||||+++.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~ 22 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAE 22 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 173
>PRK09099 type III secretion system ATPase; Provisional
Probab=98.11 E-value=2.5e-05 Score=50.74 Aligned_cols=87 Identities=10% Similarity=0.154 Sum_probs=48.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeC-CCCCHHHHHHHHHHhhCCCCCCcc-c-cCC-CH-----HH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVS-ISYDFRMVLDDIIKSVMPPSRVSV-I-IGE-DY-----QL 73 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~ll~~il~~l~~~~~~~~-~-~~~-~~-----~~ 73 (93)
..++|.|.+|+|||||++.+..... -+...+..+. +.....++.+.+...-......-. . .+. .. ..
T Consensus 164 q~~~I~G~sG~GKTtLl~~ia~~~~----~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~ 239 (441)
T PRK09099 164 QRMGIFAPAGVGKSTLMGMFARGTQ----CDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAY 239 (441)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC----CCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHH
Confidence 5789999999999999999987322 1233444444 344555555655543221110000 0 001 11 11
Q ss_pred HHHHHHHhc--CCCeEEEEeeC
Q 037564 74 KKSILRDYL--TNKKYFIVLDD 93 (93)
Q Consensus 74 l~~~l~~~L--~~kr~LlVlDD 93 (93)
..-.+-+++ +++++|+++||
T Consensus 240 ~a~tiAEyfrd~G~~VLl~~Ds 261 (441)
T PRK09099 240 VATAIAEYFRDRGLRVLLMMDS 261 (441)
T ss_pred HHHHHHHHHHHcCCCEEEeccc
Confidence 222345555 57899999997
No 174
>PRK05922 type III secretion system ATPase; Validated
Probab=98.11 E-value=3.9e-05 Score=49.71 Aligned_cols=87 Identities=6% Similarity=0.112 Sum_probs=47.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCC-CCCHHHHHHHHHHhhCCCCCCcc-c-cCC-CHH-----H
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSI-SYDFRMVLDDIIKSVMPPSRVSV-I-IGE-DYQ-----L 73 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~il~~l~~~~~~~~-~-~~~-~~~-----~ 73 (93)
..++|.|.+|+|||||.+.+... . .-+...+..+.+ .......+.+...........-+ . .+. ... .
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~--~--~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~ 233 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKG--S--KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGR 233 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhcc--C--CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHH
Confidence 46899999999999999999873 2 223344444433 33444555555443322111100 0 001 111 1
Q ss_pred HHHHHHHhc--CCCeEEEEeeC
Q 037564 74 KKSILRDYL--TNKKYFIVLDD 93 (93)
Q Consensus 74 l~~~l~~~L--~~kr~LlVlDD 93 (93)
..-.+-+++ +++++|+++||
T Consensus 234 ~a~tiAEyfrd~G~~VLl~~Ds 255 (434)
T PRK05922 234 AAMTIAEYFRDQGHRVLFIMDS 255 (434)
T ss_pred HHHHHHHHHHHcCCCEEEeccc
Confidence 223355555 57899999997
No 175
>PRK12678 transcription termination factor Rho; Provisional
Probab=98.11 E-value=8.2e-06 Score=54.46 Aligned_cols=88 Identities=15% Similarity=0.078 Sum_probs=45.7
Q ss_pred eeeEEcCCCCcHHHHHHHHhcCccccc-CCCeeE-EEEeCC-CCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHH
Q 037564 4 CKPILDSSSFDKTAFTADTYNNNHVKF-YFDCHA-WVRVSI-SYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILR 79 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~-~f~~~~-wv~~~~-~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~ 79 (93)
-..|+|++|+|||||++.+.+ .+.. +-++.+ ++-+.+ +....++.+.+-..+........... .....+.-.+-
T Consensus 418 R~LIvgpp~aGKTtLL~~IAn--~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~~A 495 (672)
T PRK12678 418 RGLIVSPPKAGKTTILQNIAN--AITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERA 495 (672)
T ss_pred EeEEeCCCCCCHHHHHHHHHH--HHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHHHH
Confidence 468999999999999999888 3422 223333 344444 33444444333111111111100000 11222333345
Q ss_pred Hhc--CCCeEEEEeeC
Q 037564 80 DYL--TNKKYFIVLDD 93 (93)
Q Consensus 80 ~~L--~~kr~LlVlDD 93 (93)
++| +++.+||++|+
T Consensus 496 e~fre~G~dVlillDS 511 (672)
T PRK12678 496 KRLVELGKDVVVLLDS 511 (672)
T ss_pred HHHHHcCCCEEEEEeC
Confidence 555 67899999996
No 176
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.11 E-value=3.2e-05 Score=50.82 Aligned_cols=85 Identities=9% Similarity=-0.040 Sum_probs=51.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCC-----cc-----ccC-CCH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRV-----SV-----IIG-EDY 71 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~-----~~-----~~~-~~~ 71 (93)
.++.|.|++|+|||||+.+++. .....-..++|++..+ +..++.+++ +.++..... .. ... ...
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~--~~~~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLE--NACANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 5788999999999999999888 3333334566666544 555555554 344322110 00 001 344
Q ss_pred HHHHHHHHHhcCC-CeEEEEee
Q 037564 72 QLKKSILRDYLTN-KKYFIVLD 92 (93)
Q Consensus 72 ~~l~~~l~~~L~~-kr~LlVlD 92 (93)
++.+..+.+.+.+ +.-.+|+|
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvID 360 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAID 360 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEc
Confidence 6677777777744 33467777
No 177
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.11 E-value=2.8e-06 Score=46.38 Aligned_cols=27 Identities=11% Similarity=0.116 Sum_probs=18.4
Q ss_pred eeEEcCCCCcHHHHHHHHhcCcccccCCC
Q 037564 5 KPILDSSSFDKTAFTADTYNNNHVKFYFD 33 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~~~~~~~~f~ 33 (93)
+.++|.+|+|||++|+.+.. .+...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 57899999999999999998 5555554
No 178
>PRK14530 adenylate kinase; Provisional
Probab=98.11 E-value=3e-06 Score=49.99 Aligned_cols=23 Identities=9% Similarity=0.016 Sum_probs=20.5
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
...|.|.|++|+||||+|+.+..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999876
No 179
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.10 E-value=2.3e-06 Score=45.30 Aligned_cols=20 Identities=10% Similarity=0.116 Sum_probs=17.7
Q ss_pred eeEEcCCCCcHHHHHHHHhc
Q 037564 5 KPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~ 24 (93)
|.|+|++|+|||+||+.++.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999665
No 180
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.10 E-value=2e-05 Score=51.78 Aligned_cols=21 Identities=10% Similarity=0.041 Sum_probs=19.3
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-+.++|++|+|||+||+.++.
T Consensus 90 giLL~GppGtGKT~la~alA~ 110 (495)
T TIGR01241 90 GVLLVGPPGTGKTLLAKAVAG 110 (495)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 477899999999999999988
No 181
>PRK06761 hypothetical protein; Provisional
Probab=98.10 E-value=9.3e-06 Score=49.87 Aligned_cols=23 Identities=13% Similarity=0.018 Sum_probs=21.6
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+++|.|.|++|+||||+++.+..
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~ 25 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLND 25 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999998
No 182
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.10 E-value=3.2e-06 Score=51.68 Aligned_cols=22 Identities=14% Similarity=0.099 Sum_probs=19.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+-+.++|++|+|||++++....
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCchhHHHHhhhc
Confidence 3468899999999999999887
No 183
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.09 E-value=2.3e-05 Score=48.20 Aligned_cols=21 Identities=10% Similarity=0.010 Sum_probs=18.1
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-+.++|++|+|||++|+.+..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999977665
No 184
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.09 E-value=4e-05 Score=44.13 Aligned_cols=22 Identities=14% Similarity=-0.032 Sum_probs=20.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.+..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHc
Confidence 4789999999999999999887
No 185
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.09 E-value=8.1e-06 Score=52.91 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=22.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYF 32 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f 32 (93)
+-+.++|++|+|||++|+.+++ +....|
T Consensus 218 ~gVLL~GPPGTGKT~LAraIA~--el~~~f 245 (438)
T PTZ00361 218 KGVILYGPPGTGKTLLAKAVAN--ETSATF 245 (438)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--hhCCCE
Confidence 3477899999999999999998 444443
No 186
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.09 E-value=4.6e-05 Score=50.02 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.8
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.++++++|+.|+||||++.+++.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 36899999999999999999887
No 187
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.09 E-value=2.8e-05 Score=46.31 Aligned_cols=22 Identities=9% Similarity=-0.065 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||++.+..
T Consensus 34 ~iigi~G~~GsGKTTl~~~L~~ 55 (229)
T PRK09270 34 TIVGIAGPPGAGKSTLAEFLEA 55 (229)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998887
No 188
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=98.09 E-value=2.7e-05 Score=47.66 Aligned_cols=87 Identities=15% Similarity=0.158 Sum_probs=46.8
Q ss_pred ceeeEEcCCCCcHHHHH-HHHhcCcccccCCCe-eEEEEeCCC-CCHHHHHHHHHHhhCCCCCCcc--ccCC-CHHH---
Q 037564 3 GCKPILDSSSFDKTAFT-ADTYNNNHVKFYFDC-HAWVRVSIS-YDFRMVLDDIIKSVMPPSRVSV--IIGE-DYQL--- 73 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa-~~~~~~~~~~~~f~~-~~wv~~~~~-~~~~~ll~~il~~l~~~~~~~~--~~~~-~~~~--- 73 (93)
.-++|.|.+|+|||+|| ..+.+ .. +-+. ++++-+.+. ....++.+.+.+.-......-+ ..+. ....
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~--~~--~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a 145 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIIN--QK--GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLA 145 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHH--hc--CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHH
Confidence 45789999999999996 55555 22 1233 356666554 4456666666653211110000 0001 1111
Q ss_pred --HHHHHHHhc--CCCeEEEEeeC
Q 037564 74 --KKSILRDYL--TNKKYFIVLDD 93 (93)
Q Consensus 74 --l~~~l~~~L--~~kr~LlVlDD 93 (93)
..-.+-+++ +++.+|+++||
T Consensus 146 ~~~a~aiAE~fr~~G~~Vlvl~Ds 169 (274)
T cd01132 146 PYTGCAMGEYFMDNGKHALIIYDD 169 (274)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEcC
Confidence 112333444 57899999997
No 189
>PTZ00185 ATPase alpha subunit; Provisional
Probab=98.09 E-value=8.6e-05 Score=49.17 Aligned_cols=91 Identities=13% Similarity=0.135 Sum_probs=49.8
Q ss_pred ceeeEEcCCCCcHHHHH-HHHhcCccc-----ccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCcc--c-cCC-CHH
Q 037564 3 GCKPILDSSSFDKTAFT-ADTYNNNHV-----KFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSV--I-IGE-DYQ 72 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa-~~~~~~~~~-----~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~--~-~~~-~~~ 72 (93)
.-++|.|.+|+|||+|| ..+.+...+ ..+-..++|+.+.+..+...-+.+.+++-+.-..... . .+. ...
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~ 269 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGL 269 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHH
Confidence 35789999999999997 555664322 1233567888888766543334444444331111100 0 001 111
Q ss_pred H-----HHHHHHHhc--CCCeEEEEeeC
Q 037564 73 L-----KKSILRDYL--TNKKYFIVLDD 93 (93)
Q Consensus 73 ~-----l~~~l~~~L--~~kr~LlVlDD 93 (93)
+ ..-.+-+++ +++.+|+|+||
T Consensus 270 r~~Apy~a~tiAEYFrd~GkdVLiv~DD 297 (574)
T PTZ00185 270 QYLAPYSGVTMGEYFMNRGRHCLCVYDD 297 (574)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 1 112234444 57899999998
No 190
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=98.09 E-value=3.8e-06 Score=48.17 Aligned_cols=23 Identities=17% Similarity=-0.038 Sum_probs=21.0
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+++|+|.+|+|||||++.+..
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHH
Confidence 45899999999999999999887
No 191
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.08 E-value=6.6e-06 Score=49.30 Aligned_cols=22 Identities=14% Similarity=0.021 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-+++|+|.+|+|||||++.+..
T Consensus 34 e~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhc
Confidence 4789999999999999999876
No 192
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=98.08 E-value=8.6e-06 Score=50.87 Aligned_cols=24 Identities=17% Similarity=0.065 Sum_probs=20.8
Q ss_pred CCceeeEEcCCCCcHHHHHHHHhc
Q 037564 1 FSGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 1 ~~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+++++.+.|.||+||||+|....-
T Consensus 1 ~~riv~f~GKGGVGKTT~aaA~A~ 24 (322)
T COG0003 1 MTRIVFFTGKGGVGKTTIAAATAV 24 (322)
T ss_pred CcEEEEEecCCcccHHHHHHHHHH
Confidence 468999999999999999988554
No 193
>PHA00729 NTP-binding motif containing protein
Probab=98.08 E-value=2.9e-06 Score=50.47 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=19.3
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-|.|.|.+|+||||||..+.+
T Consensus 19 nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999988
No 194
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=98.07 E-value=1.1e-05 Score=47.46 Aligned_cols=23 Identities=9% Similarity=-0.073 Sum_probs=21.5
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.+|+|-||=|+||||||+.+.+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~ 26 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAE 26 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHH
Confidence 56899999999999999999988
No 195
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.9e-05 Score=53.03 Aligned_cols=22 Identities=9% Similarity=0.016 Sum_probs=20.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+=+.++|++|.|||.||+.+..
T Consensus 224 rGvLlHGPPGCGKT~lA~AiAg 245 (802)
T KOG0733|consen 224 RGVLLHGPPGCGKTSLANAIAG 245 (802)
T ss_pred CceeeeCCCCccHHHHHHHHhh
Confidence 4467899999999999999999
No 196
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.07 E-value=3.3e-05 Score=48.66 Aligned_cols=21 Identities=5% Similarity=-0.048 Sum_probs=18.7
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
++++.|++|+||||+++.+.+
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~ 21 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSA 21 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999887
No 197
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.06 E-value=3.8e-06 Score=47.96 Aligned_cols=23 Identities=13% Similarity=-0.107 Sum_probs=20.8
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+|.+.|++|+||||+|+.+..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~ 26 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAE 26 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35889999999999999999887
No 198
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.06 E-value=4.1e-05 Score=49.62 Aligned_cols=87 Identities=14% Similarity=0.127 Sum_probs=47.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeC-CCCCHHHHHHHHHHhhCCCCCCcc-c-cCC------CHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVS-ISYDFRMVLDDIIKSVMPPSRVSV-I-IGE------DYQL 73 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~ll~~il~~l~~~~~~~~-~-~~~------~~~~ 73 (93)
..++|.|.+|+|||||+..++... +. +......+. +.....+++++.+..-+.....-. . .+. ....
T Consensus 157 qri~I~G~sG~GKTtLl~~Ia~~~--~~--~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~ 232 (432)
T PRK06793 157 QKIGIFAGSGVGKSTLLGMIAKNA--KA--DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAK 232 (432)
T ss_pred cEEEEECCCCCChHHHHHHHhccC--CC--CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHH
Confidence 478999999999999999988732 21 222222333 335666666655544221110000 0 001 1112
Q ss_pred HHHHHHHhc--CCCeEEEEeeC
Q 037564 74 KKSILRDYL--TNKKYFIVLDD 93 (93)
Q Consensus 74 l~~~l~~~L--~~kr~LlVlDD 93 (93)
....+.+++ +++++|+++||
T Consensus 233 ~a~~iAEyfr~~G~~VLlilDs 254 (432)
T PRK06793 233 LATSIAEYFRDQGNNVLLMMDS 254 (432)
T ss_pred HHHHHHHHHHHcCCcEEEEecc
Confidence 223344444 57899999997
No 199
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.06 E-value=3.7e-06 Score=51.69 Aligned_cols=24 Identities=4% Similarity=-0.013 Sum_probs=21.5
Q ss_pred CCceeeEEcCCCCcHHHHHHHHhc
Q 037564 1 FSGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 1 ~~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
|..+|.+.|++|+||||+|+.+..
T Consensus 1 m~~liil~G~pGSGKSTla~~L~~ 24 (300)
T PHA02530 1 MMKIILTVGVPGSGKSTWAREFAA 24 (300)
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHH
Confidence 457889999999999999999877
No 200
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.06 E-value=3.5e-05 Score=47.09 Aligned_cols=21 Identities=14% Similarity=0.026 Sum_probs=19.4
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+|+|.|.+|+||||+++.+.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~ 21 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEH 21 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998876
No 201
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.06 E-value=7.9e-05 Score=42.33 Aligned_cols=23 Identities=13% Similarity=-0.058 Sum_probs=20.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|.|||||++.+...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999884
No 202
>PRK13949 shikimate kinase; Provisional
Probab=98.06 E-value=3.6e-06 Score=48.05 Aligned_cols=21 Identities=10% Similarity=-0.080 Sum_probs=19.4
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-|.|+|++|+||||+++.+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999887
No 203
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.9e-05 Score=53.83 Aligned_cols=39 Identities=15% Similarity=0.065 Sum_probs=26.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSI 42 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 42 (93)
+-|-+.|+.|+|||+|++.+++... +++.-...++.++.
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~ 470 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCST 470 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechh
Confidence 4577899999999999999999432 22233334555443
No 204
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.05 E-value=3.3e-06 Score=47.63 Aligned_cols=20 Identities=5% Similarity=0.066 Sum_probs=18.2
Q ss_pred eeEEcCCCCcHHHHHHHHhc
Q 037564 5 KPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~ 24 (93)
|.+.|++|+||||+|+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999887
No 205
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.05 E-value=4.6e-06 Score=47.41 Aligned_cols=24 Identities=8% Similarity=0.001 Sum_probs=21.2
Q ss_pred CCceeeEEcCCCCcHHHHHHHHhc
Q 037564 1 FSGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 1 ~~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
|+..|.++|++|+||||+|+.+..
T Consensus 1 ~~~~i~~~G~~GsGKst~~~~la~ 24 (171)
T PRK03731 1 MTQPLFLVGARGCGKTTVGMALAQ 24 (171)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 346788999999999999999987
No 206
>PRK15453 phosphoribulokinase; Provisional
Probab=98.05 E-value=7e-05 Score=46.10 Aligned_cols=22 Identities=14% Similarity=-0.022 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|.+|+||||+|+.+.+
T Consensus 6 piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 6 PIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998875
No 207
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.05 E-value=6e-06 Score=47.84 Aligned_cols=23 Identities=9% Similarity=-0.077 Sum_probs=21.0
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.++|.|+|++|+|||||++.+..
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~ 26 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLE 26 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHh
Confidence 46889999999999999999987
No 208
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=98.05 E-value=5.1e-05 Score=49.38 Aligned_cols=87 Identities=9% Similarity=0.087 Sum_probs=47.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCC-CCHHHHHHHHHHhhCCCCCCcc--ccC-CCHH-----H
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSIS-YDFRMVLDDIIKSVMPPSRVSV--IIG-EDYQ-----L 73 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~ll~~il~~l~~~~~~~~--~~~-~~~~-----~ 73 (93)
..++|.|.+|+|||||++.+... . ..+..++..+... ....++...+...-......-+ ..+ .... .
T Consensus 169 qrigI~G~sG~GKSTLl~~I~g~--~--~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~~ 244 (451)
T PRK05688 169 QRLGLFAGTGVGKSVLLGMMTRF--T--EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAM 244 (451)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC--C--CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHHH
Confidence 47899999999999999988772 1 1233333344433 3445555555443221110000 000 1111 1
Q ss_pred HHHHHHHhc--CCCeEEEEeeC
Q 037564 74 KKSILRDYL--TNKKYFIVLDD 93 (93)
Q Consensus 74 l~~~l~~~L--~~kr~LlVlDD 93 (93)
..-.+-+++ +++++|+++||
T Consensus 245 ~a~aiAEyfrd~G~~VLl~~Ds 266 (451)
T PRK05688 245 YCTRIAEYFRDKGKNVLLLMDS 266 (451)
T ss_pred HHHHHHHHHHHCCCCEEEEecc
Confidence 122345555 57899999997
No 209
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.05 E-value=6.9e-06 Score=47.10 Aligned_cols=45 Identities=9% Similarity=0.010 Sum_probs=29.6
Q ss_pred eeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHH
Q 037564 4 CKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDD 52 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~ 52 (93)
++.|.|++|+|||+|+.++... ....=..+.|++... +..++.+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~--~~~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYA--GLARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH--HHHCCCcEEEEECCC--CHHHHHHH
Confidence 3678999999999999988763 222224566776544 34444444
No 210
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.04 E-value=6.8e-06 Score=47.39 Aligned_cols=23 Identities=13% Similarity=0.046 Sum_probs=21.5
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+.+.++|++|+||+||+..+..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~ 24 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQ 24 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHh
Confidence 57899999999999999999988
No 211
>PRK05439 pantothenate kinase; Provisional
Probab=98.04 E-value=2.7e-05 Score=48.46 Aligned_cols=22 Identities=14% Similarity=-0.130 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-+|+|.|.+|+||||+|+.+..
T Consensus 87 ~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 87 FIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998876
No 212
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=98.04 E-value=4.2e-06 Score=47.77 Aligned_cols=20 Identities=15% Similarity=0.009 Sum_probs=18.4
Q ss_pred eeeEEcCCCCcHHHHHHHHh
Q 037564 4 CKPILDSSSFDKTAFTADTY 23 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~ 23 (93)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999886
No 213
>PRK13946 shikimate kinase; Provisional
Probab=98.04 E-value=5e-06 Score=47.96 Aligned_cols=23 Identities=4% Similarity=-0.071 Sum_probs=20.9
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+.|.+.|++|+||||+++.+..
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~ 32 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLAT 32 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 36789999999999999999987
No 214
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.04 E-value=6.7e-06 Score=49.12 Aligned_cols=20 Identities=10% Similarity=0.122 Sum_probs=18.8
Q ss_pred eeEEcCCCCcHHHHHHHHhc
Q 037564 5 KPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~ 24 (93)
|.|.|++|+||||+|+.+..
T Consensus 9 Ivl~G~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSK 28 (229)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999999877
No 215
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=98.04 E-value=3.8e-05 Score=43.94 Aligned_cols=47 Identities=9% Similarity=0.086 Sum_probs=33.1
Q ss_pred eeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHh
Q 037564 4 CKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKS 56 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~ 56 (93)
++.|.|.+|+|||++|.++... ......|+.-.+.++. ++.+.|...
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H 47 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARH 47 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHH
Confidence 4678999999999999998762 2235667766666654 455555553
No 216
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.04 E-value=2.9e-05 Score=52.18 Aligned_cols=21 Identities=19% Similarity=0.020 Sum_probs=19.7
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+.|+|.+|+|||.|+..+++
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~ 336 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGH 336 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999998
No 217
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.03 E-value=3.9e-06 Score=51.45 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=18.7
Q ss_pred eeEEcCCCCcHHHHHHHHhc
Q 037564 5 KPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.+.|++|.||||||..+++
T Consensus 55 vLl~GPPGlGKTTLA~IIA~ 74 (332)
T COG2255 55 VLLFGPPGLGKTTLAHIIAN 74 (332)
T ss_pred EEeeCCCCCcHHHHHHHHHH
Confidence 56899999999999999999
No 218
>PRK13948 shikimate kinase; Provisional
Probab=98.03 E-value=4.9e-06 Score=48.08 Aligned_cols=23 Identities=4% Similarity=-0.120 Sum_probs=20.8
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
++.|.+.|+.|+||||+++.+..
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999987
No 219
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.03 E-value=7.9e-05 Score=42.80 Aligned_cols=22 Identities=14% Similarity=0.077 Sum_probs=20.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|.+|+|||||++.++.
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G 47 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAG 47 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999987
No 220
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=8e-05 Score=47.90 Aligned_cols=81 Identities=11% Similarity=0.050 Sum_probs=48.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHHh
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRDY 81 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~~ 81 (93)
.+|.|-|-+|+|||||.-++.. ++...- .+.|| +...+..++ +--+++++.+.....-.. .+.++..+.+.+
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~--~lA~~~-~vLYV--sGEES~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~- 166 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAA--RLAKRG-KVLYV--SGEESLQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQ- 166 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHH--HHHhcC-cEEEE--eCCcCHHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHh-
Confidence 4788899999999999999988 555433 45555 444454443 222345553332111111 455555555544
Q ss_pred cCCCeEEEEee
Q 037564 82 LTNKKYFIVLD 92 (93)
Q Consensus 82 L~~kr~LlVlD 92 (93)
.+.-|+|+|
T Consensus 167 --~~p~lvVID 175 (456)
T COG1066 167 --EKPDLVVID 175 (456)
T ss_pred --cCCCEEEEe
Confidence 566788888
No 221
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.02 E-value=4.9e-06 Score=48.52 Aligned_cols=23 Identities=9% Similarity=-0.132 Sum_probs=20.8
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.+|.+.|++|+||||||+.+..
T Consensus 24 ~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999887
No 222
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.02 E-value=5.1e-06 Score=48.57 Aligned_cols=23 Identities=17% Similarity=0.006 Sum_probs=21.1
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.+|.|.|.+|+||||+|+.+..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~ 25 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIAR 25 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999988
No 223
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.02 E-value=6.2e-06 Score=48.90 Aligned_cols=22 Identities=0% Similarity=-0.090 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.+.++|++|+|||+||+.+++
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~ 64 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVA 64 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999988
No 224
>CHL00176 ftsH cell division protein; Validated
Probab=98.02 E-value=2.7e-05 Score=52.64 Aligned_cols=22 Identities=9% Similarity=0.013 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+-+.++|++|+|||+||+.++.
T Consensus 217 ~gVLL~GPpGTGKT~LAralA~ 238 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIAG 238 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999988
No 225
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=98.02 E-value=2.4e-05 Score=46.86 Aligned_cols=48 Identities=8% Similarity=-0.043 Sum_probs=33.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDII 54 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il 54 (93)
.++.|.|.+|+|||++|.++.. +....-..++|++... ++.++.+++.
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~--~~~~~ge~~lyvs~ee--~~~~i~~~~~ 69 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLW--NGLQMGEPGIYVALEE--HPVQVRRNMA 69 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEEEeeC--CHHHHHHHHH
Confidence 5788999999999999998766 2222345678887655 4555655543
No 226
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.01 E-value=1.6e-05 Score=54.87 Aligned_cols=22 Identities=9% Similarity=0.063 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.++.++|++|+|||++|+.+++
T Consensus 348 ~~lll~GppG~GKT~lAk~iA~ 369 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGKSIAK 369 (775)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999998
No 227
>PRK13768 GTPase; Provisional
Probab=98.01 E-value=9.8e-06 Score=49.05 Aligned_cols=24 Identities=17% Similarity=0.059 Sum_probs=20.8
Q ss_pred CCceeeEEcCCCCcHHHHHHHHhc
Q 037564 1 FSGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 1 ~~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
|..++.+.|++|+||||++..+..
T Consensus 1 ~~~~i~v~G~~G~GKTt~~~~~~~ 24 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLTKALSD 24 (253)
T ss_pred CcEEEEEECCCCccHHHHHHHHHH
Confidence 456899999999999999888776
No 228
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=98.01 E-value=2.4e-05 Score=50.87 Aligned_cols=90 Identities=10% Similarity=0.156 Sum_probs=53.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCC-CCHHHHHHHHHHhhCCCCCCcc-c-cCC------CHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSIS-YDFRMVLDDIIKSVMPPSRVSV-I-IGE------DYQL 73 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~ll~~il~~l~~~~~~~~-~-~~~------~~~~ 73 (93)
.-++|.|.+|+|||+|+..+..+.. ..+-+.++|+-+.+. ....++.+++...-......-+ . .+. ..-.
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~ 217 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGH 217 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHH
Confidence 4578999999999999999877422 222367778877654 4456666666653211110000 0 001 1112
Q ss_pred HHHHHHHhcC---CCeEEEEeeC
Q 037564 74 KKSILRDYLT---NKKYFIVLDD 93 (93)
Q Consensus 74 l~~~l~~~L~---~kr~LlVlDD 93 (93)
..-.+-++++ ++++|+++||
T Consensus 218 ~a~tiAEyfrd~~G~~VLl~~Ds 240 (449)
T TIGR03305 218 TALTMAEYFRDDEKQDVLLLIDN 240 (449)
T ss_pred HHHHHHHHHHHhcCCceEEEecC
Confidence 2334566664 5899999997
No 229
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.01 E-value=2.1e-05 Score=45.77 Aligned_cols=23 Identities=9% Similarity=-0.172 Sum_probs=21.1
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.+|+|.|+.|+||||+++.+.+
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~ 25 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKE 25 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999887
No 230
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.01 E-value=2.3e-05 Score=45.32 Aligned_cols=22 Identities=14% Similarity=-0.188 Sum_probs=20.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|..|+||||+++.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~ 25 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKK 25 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 231
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.01 E-value=7.7e-06 Score=52.16 Aligned_cols=81 Identities=11% Similarity=0.121 Sum_probs=53.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeE-EEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHHHHHHh
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHA-WVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY 81 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~-wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 81 (93)
+.++++|.+|+||||++-.+.+ +...|.... ++.+.+-.+...+.-.+...+.-.. .+-+.-...+...
T Consensus 15 RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~-------~~g~~~~~~~~~~ 84 (414)
T COG3903 15 RLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHV-------QPGDSAVDTLVRR 84 (414)
T ss_pred heeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccc-------ccchHHHHHHHHH
Confidence 6789999999999999998877 455676555 4455555555555555555555332 2333445556666
Q ss_pred cCCCeEEEEeeC
Q 037564 82 LTNKKYFIVLDD 93 (93)
Q Consensus 82 L~~kr~LlVlDD 93 (93)
..++|.++|+||
T Consensus 85 ~~~rr~llvldn 96 (414)
T COG3903 85 IGDRRALLVLDN 96 (414)
T ss_pred HhhhhHHHHhcC
Confidence 677888888876
No 232
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.01 E-value=7.8e-05 Score=48.69 Aligned_cols=83 Identities=7% Similarity=0.005 Sum_probs=44.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHHh
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRDY 81 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~~ 81 (93)
.++.|.|.+|+|||||+.++.. .....-..++|++... +..++... ++.++.......-.. .+.+.+...+.+
T Consensus 95 svilI~G~pGsGKTTL~lq~a~--~~a~~g~kvlYvs~EE--s~~qi~~r-a~rlg~~~~~l~~~~e~~~~~I~~~i~~- 168 (454)
T TIGR00416 95 SLILIGGDPGIGKSTLLLQVAC--QLAKNQMKVLYVSGEE--SLQQIKMR-AIRLGLPEPNLYVLSETNWEQICANIEE- 168 (454)
T ss_pred eEEEEEcCCCCCHHHHHHHHHH--HHHhcCCcEEEEECcC--CHHHHHHH-HHHcCCChHHeEEcCCCCHHHHHHHHHh-
Confidence 5788999999999999999877 3332223466776543 33333322 233332111100011 445555544433
Q ss_pred cCCCeEEEEeeC
Q 037564 82 LTNKKYFIVLDD 93 (93)
Q Consensus 82 L~~kr~LlVlDD 93 (93)
.+.-++|+|.
T Consensus 169 --~~~~~vVIDS 178 (454)
T TIGR00416 169 --ENPQACVIDS 178 (454)
T ss_pred --cCCcEEEEec
Confidence 2344788883
No 233
>PRK14531 adenylate kinase; Provisional
Probab=98.00 E-value=6.2e-06 Score=47.52 Aligned_cols=24 Identities=13% Similarity=-0.013 Sum_probs=21.1
Q ss_pred CCceeeEEcCCCCcHHHHHHHHhc
Q 037564 1 FSGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 1 ~~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
|...|.+.|++|+||||+++.+..
T Consensus 1 ~~~~i~i~G~pGsGKsT~~~~la~ 24 (183)
T PRK14531 1 MKQRLLFLGPPGAGKGTQAARLCA 24 (183)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999877
No 234
>PRK05973 replicative DNA helicase; Provisional
Probab=98.00 E-value=2.8e-05 Score=46.69 Aligned_cols=48 Identities=8% Similarity=-0.077 Sum_probs=31.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDII 54 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il 54 (93)
.++.|.|.+|+|||+++.++... ....-..++|++...+ ..++...+.
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~--~a~~Ge~vlyfSlEes--~~~i~~R~~ 112 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVE--AMKSGRTGVFFTLEYT--EQDVRDRLR 112 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEEEeCC--HHHHHHHHH
Confidence 57889999999999999998763 2222334566665543 445555543
No 235
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.00 E-value=5.7e-06 Score=48.95 Aligned_cols=22 Identities=14% Similarity=0.045 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.+..
T Consensus 29 evv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 4889999999999999998765
No 236
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.00 E-value=6.7e-06 Score=48.29 Aligned_cols=23 Identities=22% Similarity=0.020 Sum_probs=20.5
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
++.|.|.|++|+|||||++.+..
T Consensus 13 ~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 13 PLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CeEEEEECcCCCCHHHHHHHHHh
Confidence 46789999999999999999865
No 237
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=98.00 E-value=4.5e-06 Score=47.33 Aligned_cols=24 Identities=13% Similarity=0.040 Sum_probs=21.5
Q ss_pred CCceeeEEcCCCCcHHHHHHHHhc
Q 037564 1 FSGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 1 ~~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+..+++|+|+.++|||||..++..
T Consensus 1 m~~Il~ivG~k~SGKTTLie~lv~ 24 (161)
T COG1763 1 MMKILGIVGYKNSGKTTLIEKLVR 24 (161)
T ss_pred CCcEEEEEecCCCChhhHHHHHHH
Confidence 457999999999999999999866
No 238
>COG4240 Predicted kinase [General function prediction only]
Probab=98.00 E-value=4.3e-05 Score=45.85 Aligned_cols=79 Identities=13% Similarity=-0.014 Sum_probs=46.9
Q ss_pred eeeEEcCCCCcHHHHHHHHhcCcccccCC-CeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC--CCHHHHHHHHHH
Q 037564 4 CKPILDSSSFDKTAFTADTYNNNHVKFYF-DCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG--EDYQLKKSILRD 80 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~--~~~~~l~~~l~~ 80 (93)
+++|.|+.|+||||++..++. .+.... ......++..-+-...-...++++...-.... +.. .+..-+...+..
T Consensus 52 i~gisGpQGSGKStls~~i~~--~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~R-GlpGTHD~tlglnVLna 128 (300)
T COG4240 52 IVGISGPQGSGKSTLSALIVR--LLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTR-GLPGTHDPTLGLNVLNA 128 (300)
T ss_pred EEEeecCCCCchhhHHHHHHH--HHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhccc-CCCCCCchHHHHHHHHH
Confidence 789999999999999999988 555444 34555555544444444444555532111000 111 566666666666
Q ss_pred hcCCC
Q 037564 81 YLTNK 85 (93)
Q Consensus 81 ~L~~k 85 (93)
..+++
T Consensus 129 i~~g~ 133 (300)
T COG4240 129 IARGG 133 (300)
T ss_pred HhcCC
Confidence 65554
No 239
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.00 E-value=4.5e-06 Score=47.26 Aligned_cols=22 Identities=14% Similarity=0.058 Sum_probs=20.3
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
+|+|.|++|+||||+|+.+.++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~ 23 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEH 23 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHH
Confidence 6899999999999999999883
No 240
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.00 E-value=5.3e-06 Score=46.15 Aligned_cols=20 Identities=10% Similarity=-0.077 Sum_probs=18.7
Q ss_pred eeEEcCCCCcHHHHHHHHhc
Q 037564 5 KPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~ 24 (93)
|.++|++|+||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999999986
No 241
>PLN02796 D-glycerate 3-kinase
Probab=97.99 E-value=2.5e-05 Score=49.24 Aligned_cols=21 Identities=14% Similarity=0.004 Sum_probs=19.7
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+|+|.|.+|+|||||++.+..
T Consensus 102 iIGI~G~sGSGKSTLa~~L~~ 122 (347)
T PLN02796 102 VIGISAPQGCGKTTLVFALVY 122 (347)
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 589999999999999999887
No 242
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=97.99 E-value=6.6e-05 Score=48.70 Aligned_cols=22 Identities=14% Similarity=0.073 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..++|.|.+|+|||||++.+..
T Consensus 158 q~~~i~G~sG~GKStLl~~i~~ 179 (434)
T PRK08472 158 QKLGIFAGSGVGKSTLMGMIVK 179 (434)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 4789999999999999999987
No 243
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.99 E-value=5.3e-06 Score=47.36 Aligned_cols=20 Identities=15% Similarity=0.096 Sum_probs=17.7
Q ss_pred eeEEcCCCCcHHHHHHHHhc
Q 037564 5 KPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~ 24 (93)
|.|.|.+|+|||||.+++++
T Consensus 2 i~iTG~pG~GKTTll~k~i~ 21 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIE 21 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 68999999999999999887
No 244
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.99 E-value=6.4e-06 Score=45.72 Aligned_cols=38 Identities=11% Similarity=0.066 Sum_probs=26.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccc-cCCCeeEEEEeCC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVK-FYFDCHAWVRVSI 42 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~wv~~~~ 42 (93)
.+|.|+|..++|||||++.+.+ .+. ..+...+......
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~--~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN--ELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH--HHHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHhHcCCceEEEEEccC
Confidence 4789999999999999999998 444 3455554555443
No 245
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.99 E-value=5.6e-06 Score=46.31 Aligned_cols=21 Identities=10% Similarity=-0.073 Sum_probs=19.2
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
++.|.|.+|+||||+|+.+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~ 21 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEE 21 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999998877
No 246
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.99 E-value=5e-06 Score=50.40 Aligned_cols=21 Identities=10% Similarity=-0.133 Sum_probs=18.7
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-+.++|++|+||||+|+.+++
T Consensus 44 ~vll~GppGtGKTtlA~~ia~ 64 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGK 64 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999876
No 247
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=97.99 E-value=6.3e-05 Score=48.57 Aligned_cols=87 Identities=14% Similarity=0.163 Sum_probs=45.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCC-CHHHHHHHHHHhhCCCCCCcc--ccC-CCHH-----H
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISY-DFRMVLDDIIKSVMPPSRVSV--IIG-EDYQ-----L 73 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~-~~~~ll~~il~~l~~~~~~~~--~~~-~~~~-----~ 73 (93)
..++|.|.+|+|||||++.+... ... +......+.+.. ...++....+.+-......-. ..+ .... .
T Consensus 138 qri~I~G~sG~GKTtLl~~i~~~--~~~--~~gvi~~~Ger~~ev~e~~~~~l~~~~~~~~v~v~~tsd~~~~~r~~~~~ 213 (413)
T TIGR03497 138 QRVGIFAGSGVGKSTLLGMIARN--AKA--DINVIALIGERGREVRDFIEKDLGEEGLKRSVVVVATSDQPALMRLKAAF 213 (413)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--CCC--CeEEEEEEccchHHHHHHHHHHhcccccceEEEEEECCCCCHHHHHHHHH
Confidence 57899999999999999988873 222 223333344332 444455444432111100000 000 1111 2
Q ss_pred HHHHHHHhc--CCCeEEEEeeC
Q 037564 74 KKSILRDYL--TNKKYFIVLDD 93 (93)
Q Consensus 74 l~~~l~~~L--~~kr~LlVlDD 93 (93)
..-.+-+++ +++++|+++||
T Consensus 214 ~a~tiAEyfr~~G~~Vll~~Ds 235 (413)
T TIGR03497 214 TATAIAEYFRDQGKDVLLMMDS 235 (413)
T ss_pred HHHHHHHHHHHCCCCEEEEEcC
Confidence 223344555 57899999997
No 248
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.99 E-value=0.00014 Score=44.09 Aligned_cols=81 Identities=14% Similarity=0.174 Sum_probs=49.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeC-CCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHHH----
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVS-ISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSI---- 77 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~-~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~---- 77 (93)
+++.++|.-|+|||.+++.+.. ... . +.++-+.+. +..+...+...+...+..+.. .+.......
T Consensus 52 g~~~vtGevGsGKTv~~Ral~~--s~~-~-d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~------~~~~~~~e~~~~~ 121 (269)
T COG3267 52 GILAVTGEVGSGKTVLRRALLA--SLN-E-DQVAVVVIDKPTLSDATLLEAIVADLESQPK------VNVNAVLEQIDRE 121 (269)
T ss_pred ceEEEEecCCCchhHHHHHHHH--hcC-C-CceEEEEecCcchhHHHHHHHHHHHhccCcc------chhHHHHHHHHHH
Confidence 4889999999999999995443 111 1 112224444 445778888888888875222 333433333
Q ss_pred HHHhc-CCCe-EEEEeeC
Q 037564 78 LRDYL-TNKK-YFIVLDD 93 (93)
Q Consensus 78 l~~~L-~~kr-~LlVlDD 93 (93)
+.... +++| +.++.||
T Consensus 122 L~al~~~g~r~v~l~vdE 139 (269)
T COG3267 122 LAALVKKGKRPVVLMVDE 139 (269)
T ss_pred HHHHHHhCCCCeEEeehh
Confidence 33333 5666 7777764
No 249
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=97.99 E-value=1.3e-05 Score=49.84 Aligned_cols=23 Identities=13% Similarity=-0.127 Sum_probs=19.1
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.|++.+.|-||+||||+|....-
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~ 23 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALAL 23 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCcHHHHHHHHH
Confidence 37899999999999999876554
No 250
>PLN03025 replication factor C subunit; Provisional
Probab=97.98 E-value=4.8e-05 Score=47.45 Aligned_cols=20 Identities=10% Similarity=-0.092 Sum_probs=18.3
Q ss_pred eeEEcCCCCcHHHHHHHHhc
Q 037564 5 KPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.++|++|+||||+|..+++
T Consensus 37 lll~Gp~G~GKTtla~~la~ 56 (319)
T PLN03025 37 LILSGPPGTGKTTSILALAH 56 (319)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999887
No 251
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=4.4e-06 Score=56.48 Aligned_cols=28 Identities=11% Similarity=0.069 Sum_probs=24.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYF 32 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f 32 (93)
.+++++|++|+|||+|++.++. .+...|
T Consensus 351 pILcLVGPPGVGKTSLgkSIA~--al~Rkf 378 (782)
T COG0466 351 PILCLVGPPGVGKTSLGKSIAK--ALGRKF 378 (782)
T ss_pred cEEEEECCCCCCchhHHHHHHH--HhCCCE
Confidence 5899999999999999999998 666555
No 252
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.98 E-value=6.9e-06 Score=43.76 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=19.7
Q ss_pred eeEEcCCCCcHHHHHHHHhcCc
Q 037564 5 KPILDSSSFDKTAFTADTYNNN 26 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~~~ 26 (93)
|.|.|.+|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6899999999999999998753
No 253
>PLN02924 thymidylate kinase
Probab=97.98 E-value=3.4e-05 Score=45.88 Aligned_cols=23 Identities=9% Similarity=-0.074 Sum_probs=21.1
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+..|+|.|..|+||||+++.+..
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~ 38 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVS 38 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999988
No 254
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.98 E-value=6.8e-06 Score=52.73 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.8
Q ss_pred CCceeeEEcCCCCcHHHHHHHHhc
Q 037564 1 FSGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 1 ~~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.+.|+|.|.+|+|||||++.+..
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~ 241 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLAN 241 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999887
No 255
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.97 E-value=3.7e-05 Score=45.97 Aligned_cols=47 Identities=9% Similarity=0.008 Sum_probs=29.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDI 53 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i 53 (93)
.++.|.|++|+||||+|.+++.. -.+.. ..++|++ ...+..++++++
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~-~~~~g-~~~~yi~--~e~~~~~~~~~~ 71 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYG-FLQNG-YSVSYVS--TQLTTTEFIKQM 71 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH-HHhCC-CcEEEEe--CCCCHHHHHHHH
Confidence 57899999999999998776652 11222 3345555 333445666665
No 256
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=3e-06 Score=55.77 Aligned_cols=23 Identities=9% Similarity=-0.152 Sum_probs=19.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
..+.++|++|+||||+|+.+++.
T Consensus 37 ha~Lf~GppGtGKTTlA~~lA~~ 59 (504)
T PRK14963 37 HAYLFSGPRGVGKTTTARLIAMA 59 (504)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 34678999999999999998873
No 257
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.97 E-value=8.7e-06 Score=44.52 Aligned_cols=24 Identities=8% Similarity=0.019 Sum_probs=21.3
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcC
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
..+++|+|..|+|||||.+.++..
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEEccCCCccccceeeeccc
Confidence 357899999999999999998874
No 258
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.97 E-value=2.1e-05 Score=53.88 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=20.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+-+.++|++|+|||+||+.+++
T Consensus 213 ~giLL~GppGtGKT~laraia~ 234 (733)
T TIGR01243 213 KGVLLYGPPGTGKTLLAKAVAN 234 (733)
T ss_pred ceEEEECCCCCChHHHHHHHHH
Confidence 4578999999999999999988
No 259
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=97.97 E-value=0.00018 Score=46.69 Aligned_cols=87 Identities=10% Similarity=0.151 Sum_probs=47.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCC-CCCHHHHHHHHHHhhCCCCCCcc-cc-CCCHH------H
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSI-SYDFRMVLDDIIKSVMPPSRVSV-II-GEDYQ------L 73 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~il~~l~~~~~~~~-~~-~~~~~------~ 73 (93)
..++|.|.+|+|||||.+.+... .. -+...+..+.. ..+..++..+...........-+ .. +.+.. .
T Consensus 146 q~~~I~G~sG~GKStLl~~I~~~--~~--~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~~tvvv~~~s~~p~~~r~~~~~ 221 (422)
T TIGR02546 146 QRIGIFAGAGVGKSTLLGMIARG--AS--ADVNVIALIGERGREVREFIEHHLGEEGRKRSVLVVSTSDRPSLERLKAAY 221 (422)
T ss_pred CEEEEECCCCCChHHHHHHHhCC--CC--CCEEEEEEEccCCcCHHHHHHHHhccccccceEEEeccccCCHHHHHHHHH
Confidence 46899999999999999998883 22 23344444443 44555555554433211110000 00 01111 1
Q ss_pred HHHHHHHhc--CCCeEEEEeeC
Q 037564 74 KKSILRDYL--TNKKYFIVLDD 93 (93)
Q Consensus 74 l~~~l~~~L--~~kr~LlVlDD 93 (93)
..-.+.+++ +++++|+++||
T Consensus 222 ~a~~~AE~f~~~g~~Vl~~~Ds 243 (422)
T TIGR02546 222 TATAIAEYFRDQGKRVLLMMDS 243 (422)
T ss_pred HHHHHHHHHHHCCCcEEEEEeC
Confidence 223345555 56899999997
No 260
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.97 E-value=0.00012 Score=41.99 Aligned_cols=22 Identities=9% Similarity=-0.017 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.++.|.|.+|+|||++|..+..
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~ 23 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAA 23 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 3688999999999999999887
No 261
>PRK06620 hypothetical protein; Validated
Probab=97.96 E-value=8.9e-06 Score=48.11 Aligned_cols=23 Identities=30% Similarity=-0.093 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
+.+.++|++|+|||+|++.+++.
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~ 67 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNL 67 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhc
Confidence 45889999999999999988774
No 262
>PRK04182 cytidylate kinase; Provisional
Probab=97.96 E-value=7.5e-06 Score=46.64 Aligned_cols=21 Identities=14% Similarity=-0.042 Sum_probs=19.9
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+|+|.|++|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKstia~~la~ 22 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 263
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.96 E-value=8.6e-06 Score=43.22 Aligned_cols=21 Identities=19% Similarity=0.090 Sum_probs=19.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHh
Q 037564 3 GCKPILDSSSFDKTAFTADTY 23 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~ 23 (93)
..++|.|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 478999999999999999976
No 264
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.95 E-value=8.2e-06 Score=46.68 Aligned_cols=22 Identities=5% Similarity=-0.059 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..|.+.|++|+||||+++.+..
T Consensus 5 ~~I~liG~~GaGKStl~~~La~ 26 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHH
Confidence 4689999999999999999987
No 265
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.95 E-value=9.7e-06 Score=54.66 Aligned_cols=22 Identities=14% Similarity=-0.080 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+++.++|++|+||||+++.++.
T Consensus 111 ~illL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 111 RILLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 266
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.95 E-value=6e-06 Score=46.61 Aligned_cols=20 Identities=20% Similarity=0.059 Sum_probs=16.9
Q ss_pred eeEEcCCCCcHHHHHHHHhc
Q 037564 5 KPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~ 24 (93)
|+|.|..|+|||||++.+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~ 21 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAA 21 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999987
No 267
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.95 E-value=7e-06 Score=51.86 Aligned_cols=22 Identities=9% Similarity=-0.061 Sum_probs=20.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+++.++|++|+||||||+.+.+
T Consensus 79 ~il~L~GPPGsGKStla~~La~ 100 (361)
T smart00763 79 QILYLLGPVGGGKSSLVECLKR 100 (361)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999988
No 268
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.95 E-value=6.5e-06 Score=49.55 Aligned_cols=21 Identities=10% Similarity=0.124 Sum_probs=19.1
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+|.++|++|+||||+|+.+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~ 21 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAK 21 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 269
>PRK08727 hypothetical protein; Validated
Probab=97.95 E-value=1.1e-05 Score=48.33 Aligned_cols=36 Identities=8% Similarity=-0.018 Sum_probs=26.3
Q ss_pred eeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeC
Q 037564 4 CKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVS 41 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~ 41 (93)
.+.++|.+|+|||.|+..+++ +.........|++..
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~--~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCA--AAEQAGRSSAYLPLQ 78 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEeHH
Confidence 588999999999999999987 443333344566543
No 270
>PRK14527 adenylate kinase; Provisional
Probab=97.95 E-value=8.4e-06 Score=47.23 Aligned_cols=23 Identities=9% Similarity=-0.038 Sum_probs=20.6
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.+|.+.|++|+||||+|+.+..
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~ 28 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQ 28 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 271
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=97.94 E-value=7.6e-05 Score=48.56 Aligned_cols=22 Identities=14% Similarity=0.048 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..++|.|.+|+|||||.+.+..
T Consensus 164 q~~~I~G~sG~GKStLl~~I~~ 185 (440)
T TIGR01026 164 QRIGIFAGSGVGKSTLLGMIAR 185 (440)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999998887
No 272
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.94 E-value=2.7e-05 Score=47.34 Aligned_cols=22 Identities=9% Similarity=-0.038 Sum_probs=19.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+-+.+.|++|+|||+||+.+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHH
Confidence 4577899999999999999987
No 273
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.94 E-value=0.00035 Score=38.84 Aligned_cols=23 Identities=4% Similarity=-0.028 Sum_probs=20.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|.+|.|||||++.+...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 47899999999999999998874
No 274
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.93 E-value=9.9e-06 Score=46.54 Aligned_cols=22 Identities=9% Similarity=0.019 Sum_probs=20.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.++.+.|++|+||||+++.+..
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~ 25 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAA 25 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999887
No 275
>PRK08356 hypothetical protein; Provisional
Probab=97.93 E-value=9.4e-06 Score=47.23 Aligned_cols=21 Identities=10% Similarity=-0.132 Sum_probs=18.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHh
Q 037564 3 GCKPILDSSSFDKTAFTADTY 23 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~ 23 (93)
.+|+|+|++|+||||+|+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999983
No 276
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.93 E-value=4e-05 Score=46.56 Aligned_cols=38 Identities=13% Similarity=-0.063 Sum_probs=28.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSI 42 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 42 (93)
.++.|.|++|+|||++|.+++.. ....=..++|++...
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~--~a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVT--QASRGNPVLFVTVES 74 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH--HHhCCCcEEEEEecC
Confidence 57889999999999999997662 222234677887764
No 277
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.93 E-value=3.9e-05 Score=50.47 Aligned_cols=22 Identities=9% Similarity=-0.055 Sum_probs=20.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+-|.++|++|+|||.+|+.+.+
T Consensus 260 kGILL~GPpGTGKTllAkaiA~ 281 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTAKAIAN 281 (489)
T ss_pred ceEEEECCCCCcHHHHHHHHHH
Confidence 4478999999999999999988
No 278
>PRK06820 type III secretion system ATPase; Validated
Probab=97.93 E-value=0.00037 Score=45.39 Aligned_cols=22 Identities=9% Similarity=0.048 Sum_probs=19.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..++|.|.+|+|||||++.+..
T Consensus 164 qri~I~G~sG~GKStLl~~I~~ 185 (440)
T PRK06820 164 QRIGIFAAAGVGKSTLLGMLCA 185 (440)
T ss_pred CEEEEECCCCCChHHHHHHHhc
Confidence 4689999999999999998877
No 279
>PLN02200 adenylate kinase family protein
Probab=97.93 E-value=8.9e-06 Score=48.73 Aligned_cols=22 Identities=9% Similarity=-0.073 Sum_probs=20.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|.|.|++|+||||+|+.+..
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998877
No 280
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=97.93 E-value=9.1e-06 Score=45.97 Aligned_cols=21 Identities=14% Similarity=-0.035 Sum_probs=19.8
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+|+|.|++|+||||+|+.+.+
T Consensus 2 iI~i~G~~GSGKstia~~la~ 22 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAE 22 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999977
No 281
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.92 E-value=1.1e-05 Score=46.17 Aligned_cols=29 Identities=7% Similarity=0.011 Sum_probs=23.0
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCC
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYF 32 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f 32 (93)
++-|.++||.|+||||+.+.+.. .+.-.|
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk--~L~~~F 30 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAK--ALNLPF 30 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHH--HcCCCc
Confidence 35688999999999999999987 444344
No 282
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.92 E-value=5e-05 Score=48.83 Aligned_cols=39 Identities=13% Similarity=-0.118 Sum_probs=29.7
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCC
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSI 42 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 42 (93)
...+.|||..|.|||.|++.+.+ ...........++++.
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~~s 151 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYLTS 151 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEeccH
Confidence 35689999999999999999999 6665555445555544
No 283
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.92 E-value=1.7e-05 Score=46.64 Aligned_cols=50 Identities=14% Similarity=0.016 Sum_probs=29.6
Q ss_pred eeeEEcCCCCcHHHHHHHHhcCccc-------ccCCCeeEEEEeCCCCCHHHHHHHHHH
Q 037564 4 CKPILDSSSFDKTAFTADTYNNNHV-------KFYFDCHAWVRVSISYDFRMVLDDIIK 55 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~~~~-------~~~f~~~~wv~~~~~~~~~~ll~~il~ 55 (93)
+..|+|++|+|||+++..+.. .+ ...-...+-+....+.....++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~--~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIA--QLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHH--HH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHH--HhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 478999999999986666555 22 122334444454555555666666665
No 284
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.92 E-value=0.00011 Score=47.85 Aligned_cols=22 Identities=14% Similarity=0.064 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..++|.|.+|+|||||++.+..
T Consensus 159 q~i~I~G~sG~GKStLl~~I~~ 180 (438)
T PRK07721 159 QRVGIFAGSGVGKSTLMGMIAR 180 (438)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999998887
No 285
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.91 E-value=0.00015 Score=41.84 Aligned_cols=23 Identities=4% Similarity=-0.038 Sum_probs=19.9
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+..+.++|+.|+|||++|+.+..
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~ 36 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAK 36 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35678899999999999998876
No 286
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.91 E-value=8.2e-06 Score=46.88 Aligned_cols=26 Identities=8% Similarity=-0.112 Sum_probs=22.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCccccc
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKF 30 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~ 30 (93)
.+|.+.|.+|+||||+|..+.. ++..
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~--~L~~ 49 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEE--KLFA 49 (197)
T ss_pred eEEEeecCCCCCHHHHHHHHHH--HHHH
Confidence 4788889999999999999988 5443
No 287
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=97.90 E-value=9.1e-05 Score=48.07 Aligned_cols=22 Identities=9% Similarity=0.045 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..++|.|.+|+|||||++.+..
T Consensus 156 Q~igI~G~sGaGKSTLl~~I~g 177 (434)
T PRK07196 156 QRVGLMAGSGVGKSVLLGMITR 177 (434)
T ss_pred eEEEEECCCCCCccHHHHHHhc
Confidence 5789999999999999998877
No 288
>PRK14532 adenylate kinase; Provisional
Probab=97.90 E-value=9.9e-06 Score=46.71 Aligned_cols=20 Identities=5% Similarity=-0.024 Sum_probs=18.6
Q ss_pred eeEEcCCCCcHHHHHHHHhc
Q 037564 5 KPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~ 24 (93)
|.+.|++|+||||+|+.+..
T Consensus 3 i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 77899999999999999987
No 289
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=97.90 E-value=1e-05 Score=45.63 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=19.6
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+++|+|+.|+|||||+..+..
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~ 21 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVK 21 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999988
No 290
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=97.90 E-value=1.4e-05 Score=48.93 Aligned_cols=28 Identities=11% Similarity=-0.017 Sum_probs=23.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYF 32 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f 32 (93)
++|+|+|.+|+|||||+.++.. .+++..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~--~L~~~G 29 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVD--RLSGRG 29 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HHHhCC
Confidence 5799999999999999999988 555543
No 291
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.90 E-value=9.9e-06 Score=46.74 Aligned_cols=20 Identities=10% Similarity=-0.019 Sum_probs=18.8
Q ss_pred eeEEcCCCCcHHHHHHHHhc
Q 037564 5 KPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~ 24 (93)
|.|.|++|+||||+|+.+..
T Consensus 2 I~i~G~pGsGKst~a~~La~ 21 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAK 21 (194)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999887
No 292
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.90 E-value=1.3e-05 Score=47.00 Aligned_cols=23 Identities=9% Similarity=-0.064 Sum_probs=20.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.++..
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998863
No 293
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.90 E-value=1.3e-05 Score=47.21 Aligned_cols=23 Identities=13% Similarity=-0.038 Sum_probs=20.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.++.-
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 47899999999999999998774
No 294
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.89 E-value=3.6e-05 Score=52.51 Aligned_cols=50 Identities=14% Similarity=0.066 Sum_probs=36.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhh
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSV 57 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l 57 (93)
++..++|++|.||||||..++++. .|. ++-++.|...+...+-..|...+
T Consensus 327 KilLL~GppGlGKTTLAHViAkqa----GYs-VvEINASDeRt~~~v~~kI~~av 376 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQA----GYS-VVEINASDERTAPMVKEKIENAV 376 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhc----Cce-EEEecccccccHHHHHHHHHHHH
Confidence 578899999999999999998832 232 34567777777766666655544
No 295
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=97.89 E-value=6.6e-05 Score=49.00 Aligned_cols=91 Identities=13% Similarity=0.128 Sum_probs=51.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCC--CeeEEEEeCC-CCCHHHHHHHHHHhhCCCCCCcc-c-cC-CCH-----
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYF--DCHAWVRVSI-SYDFRMVLDDIIKSVMPPSRVSV-I-IG-EDY----- 71 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f--~~~~wv~~~~-~~~~~~ll~~il~~l~~~~~~~~-~-~~-~~~----- 71 (93)
.-++|.|.+|+|||+|+..+.+.......+ ..++++.+.+ .....++++.+...-......-. . .+ ...
T Consensus 142 QR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~~a 221 (458)
T TIGR01041 142 QKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERIVT 221 (458)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHHHH
Confidence 457899999999999999988843322111 1456666654 44556666666643221111000 0 00 111
Q ss_pred HHHHHHHHHhcC---CCeEEEEeeC
Q 037564 72 QLKKSILRDYLT---NKKYFIVLDD 93 (93)
Q Consensus 72 ~~l~~~l~~~L~---~kr~LlVlDD 93 (93)
--..-.+-++++ ++++|+++||
T Consensus 222 ~~~a~tiAEyfr~d~G~~VLli~Ds 246 (458)
T TIGR01041 222 PRMALTAAEYLAFEKDMHVLVILTD 246 (458)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcC
Confidence 112233566664 6789999997
No 296
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.89 E-value=5.9e-05 Score=51.80 Aligned_cols=20 Identities=15% Similarity=0.107 Sum_probs=18.3
Q ss_pred eeEEcCCCCcHHHHHHHHhc
Q 037564 5 KPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.++|++|+|||++|+.+++
T Consensus 206 ~lL~G~pG~GKT~l~~~la~ 225 (731)
T TIGR02639 206 PLLVGEPGVGKTAIAEGLAL 225 (731)
T ss_pred eEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999887
No 297
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=97.89 E-value=2.6e-05 Score=47.40 Aligned_cols=24 Identities=4% Similarity=0.087 Sum_probs=21.2
Q ss_pred CCceeeEEcCCCCcHHHHHHHHhc
Q 037564 1 FSGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 1 ~~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
|+++|+|.|-||+||||++..+..
T Consensus 1 m~~iIav~~KGGVGKTT~~~nLA~ 24 (270)
T PRK13185 1 MALVLAVYGKGGIGKSTTSSNLSA 24 (270)
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998887776
No 298
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.89 E-value=1.4e-05 Score=47.08 Aligned_cols=23 Identities=13% Similarity=0.021 Sum_probs=20.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.+..-
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998873
No 299
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.89 E-value=1.5e-05 Score=45.87 Aligned_cols=22 Identities=9% Similarity=-0.002 Sum_probs=19.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.++.
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 5789999999999999998864
No 300
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=97.88 E-value=0.00015 Score=47.40 Aligned_cols=90 Identities=13% Similarity=0.138 Sum_probs=51.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCC-CCCHHHHHHHHHHhhCCCCCCcc-c-cCCC-HH-----H
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSI-SYDFRMVLDDIIKSVMPPSRVSV-I-IGED-YQ-----L 73 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~-~~~~~~ll~~il~~l~~~~~~~~-~-~~~~-~~-----~ 73 (93)
.-++|.|.+|+|||||+..+...... ++=..++++-+.+ .....++++++...-......-+ . .+.+ .. .
T Consensus 144 Qr~~If~~~G~GKt~L~~~~~~~~~~-~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~ 222 (461)
T TIGR01039 144 GKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVAL 222 (461)
T ss_pred CEEEeecCCCCChHHHHHHHHHHHHh-cCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 45789999999999999988763111 1123566776754 44557777777543211110000 0 0011 11 1
Q ss_pred HHHHHHHhc---CCCeEEEEeeC
Q 037564 74 KKSILRDYL---TNKKYFIVLDD 93 (93)
Q Consensus 74 l~~~l~~~L---~~kr~LlVlDD 93 (93)
..-.+-+++ +++++|+++||
T Consensus 223 ~a~tiAEyfrd~~G~~VLll~Ds 245 (461)
T TIGR01039 223 TGLTMAEYFRDEQGQDVLLFIDN 245 (461)
T ss_pred HHHHHHHHHHHhcCCeeEEEecc
Confidence 223456666 45899999997
No 301
>PRK09087 hypothetical protein; Validated
Probab=97.88 E-value=1.4e-05 Score=47.72 Aligned_cols=22 Identities=9% Similarity=-0.086 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.+.|+|++|+|||+|++.++.
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~ 66 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWRE 66 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999886
No 302
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=97.88 E-value=1.3e-05 Score=48.78 Aligned_cols=24 Identities=17% Similarity=0.158 Sum_probs=21.0
Q ss_pred CCceeeEEcCCCCcHHHHHHHHhc
Q 037564 1 FSGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 1 ~~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
|+++|+|.|-||+||||+|..+..
T Consensus 1 M~~vIav~~KGGVGKTT~a~nLA~ 24 (275)
T PRK13233 1 MTRKIAIYGKGGIGKSTTTQNTAA 24 (275)
T ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Confidence 578999999999999999887666
No 303
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.88 E-value=0.00021 Score=43.81 Aligned_cols=22 Identities=14% Similarity=0.066 Sum_probs=19.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..++++|.+|+||||++..+..
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~ 97 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 5889999999999999998766
No 304
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=97.88 E-value=0.00078 Score=42.85 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=35.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCC-CCHHHHHHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSIS-YDFRMVLDDII 54 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~ll~~il 54 (93)
..++|.|..|+|||+|+..+.++. +-+.++++.+.+. ....++++++-
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 467899999999999999998842 2356778877654 44456666653
No 305
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.87 E-value=1.5e-05 Score=43.85 Aligned_cols=23 Identities=9% Similarity=0.007 Sum_probs=21.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+|.+.|..|+||||+++.++..
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 48899999999999999999884
No 306
>PF14516 AAA_35: AAA-like domain
Probab=97.87 E-value=0.00023 Score=44.76 Aligned_cols=89 Identities=10% Similarity=0.125 Sum_probs=51.7
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCccccc-CCCeeEEEEeCCC-----CCHHHHHHHHHH----hhCCCCCCcc--ccC-
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKF-YFDCHAWVRVSIS-----YDFRMVLDDIIK----SVMPPSRVSV--IIG- 68 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~-~f~~~~wv~~~~~-----~~~~~ll~~il~----~l~~~~~~~~--~~~- 68 (93)
...+.|.|+..+|||||..++.+ ..+. .+ .++++++..- .+...+++.+.. ++.....-.. ...
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~--~l~~~~~-~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~ 107 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLE--RLQQQGY-RCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEI 107 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHH--HHHHCCC-EEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhc
Confidence 35788999999999999999987 4433 34 3456665431 245555555554 4432211000 001
Q ss_pred CCHHHHHHHHHHhc---CCCeEEEEeeC
Q 037564 69 EDYQLKKSILRDYL---TNKKYFIVLDD 93 (93)
Q Consensus 69 ~~~~~l~~~l~~~L---~~kr~LlVlDD 93 (93)
.+.......+.+++ .+++.+|+||+
T Consensus 108 ~~~~~~~~~~~~~ll~~~~~~lVL~iDE 135 (331)
T PF14516_consen 108 GSKISCTEYFEEYLLKQIDKPLVLFIDE 135 (331)
T ss_pred CChhhHHHHHHHHHHhcCCCCEEEEEec
Confidence 23344455555543 25789999995
No 307
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.87 E-value=1.4e-05 Score=48.01 Aligned_cols=22 Identities=18% Similarity=0.099 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-.++|.|++|+|||||.+.+..
T Consensus 30 EfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999999876
No 308
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.87 E-value=0.00017 Score=46.43 Aligned_cols=86 Identities=13% Similarity=0.164 Sum_probs=54.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEe-CCCCCHHHHHHHHHHhhCCCCCCcc--ccC-C-----CHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRV-SISYDFRMVLDDIIKSVMPPSRVSV--IIG-E-----DYQL 73 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~-~~~~~~~~ll~~il~~l~~~~~~~~--~~~-~-----~~~~ 73 (93)
.-++|...+|+|||||.-.+++. ..+|..+-.-+ .+.....+++++.+..-+....... ..+ . ....
T Consensus 164 QRiGIFAgsGVGKStLLgMiar~----t~aDv~ViaLIGERGREVrEFIE~~Lg~egl~rsViVvATSD~s~l~R~~aa~ 239 (441)
T COG1157 164 QRIGIFAGSGVGKSTLLGMIARN----TEADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESALMRLKAAF 239 (441)
T ss_pred ceeEEEecCCCcHHHHHHHHhcc----ccCCEEEEEEeeccchhHHHHHHHhcchhhccceEEEEECCCCCHHHHHHHHH
Confidence 45889999999999999999883 24554443333 4566778888777765543221111 011 1 2223
Q ss_pred HHHHHHHhc--CCCeEEEEee
Q 037564 74 KKSILRDYL--TNKKYFIVLD 92 (93)
Q Consensus 74 l~~~l~~~L--~~kr~LlVlD 92 (93)
....+.+++ ++|++|+++|
T Consensus 240 ~At~IAEyFRDqG~~VLL~mD 260 (441)
T COG1157 240 TATTIAEYFRDQGKRVLLIMD 260 (441)
T ss_pred HHHHHHHHHHhCCCeEEEEee
Confidence 345577777 5789999998
No 309
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.87 E-value=1.6e-05 Score=45.95 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=20.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||.+.+...
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998863
No 310
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.87 E-value=6.1e-05 Score=51.72 Aligned_cols=21 Identities=10% Similarity=0.045 Sum_probs=19.4
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-+.++|++|+|||++|+.+++
T Consensus 489 giLL~GppGtGKT~lakalA~ 509 (733)
T TIGR01243 489 GVLLFGPPGTGKTLLAKAVAT 509 (733)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999998
No 311
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=97.86 E-value=9.1e-05 Score=48.31 Aligned_cols=91 Identities=10% Similarity=0.116 Sum_probs=52.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCccccc--CCC---------eeEEEEeCCCCCHHHHHHHHHHhhC-CCCCCcc-c-cC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKF--YFD---------CHAWVRVSISYDFRMVLDDIIKSVM-PPSRVSV-I-IG 68 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~--~f~---------~~~wv~~~~~~~~~~ll~~il~~l~-~~~~~~~-~-~~ 68 (93)
.-++|.|.+|+|||||+..+.+..+..+ .-+ .+++..+.+.....+.+.+.+..-+ .....-+ . .+
T Consensus 142 QRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd 221 (466)
T TIGR01040 142 QKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAN 221 (466)
T ss_pred CeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCC
Confidence 4578999999999999999887433100 011 5566777777666666666665543 1110000 0 00
Q ss_pred -CCHH-----HHHHHHHHhcC---CCeEEEEeeC
Q 037564 69 -EDYQ-----LKKSILRDYLT---NKKYFIVLDD 93 (93)
Q Consensus 69 -~~~~-----~l~~~l~~~L~---~kr~LlVlDD 93 (93)
.... ...-.+-++++ ++++|+++||
T Consensus 222 ~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~Ds 255 (466)
T TIGR01040 222 DPTIERIITPRLALTTAEYLAYQCEKHVLVILTD 255 (466)
T ss_pred CCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccC
Confidence 1111 12233566665 5899999997
No 312
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.86 E-value=1.6e-05 Score=48.18 Aligned_cols=22 Identities=14% Similarity=0.048 Sum_probs=20.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|+.|+|||||.+.++.
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999999887
No 313
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=97.86 E-value=1.4e-05 Score=46.87 Aligned_cols=22 Identities=14% Similarity=0.132 Sum_probs=20.2
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|+++|++|+|||||+.++.++
T Consensus 7 kivv~G~~g~GKTtl~~~l~~~ 28 (219)
T COG1100 7 KIVVLGDGGVGKTTLLNRLVGD 28 (219)
T ss_pred EEEEEcCCCccHHHHHHHHhcC
Confidence 5789999999999999999986
No 314
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.86 E-value=2.3e-05 Score=46.46 Aligned_cols=86 Identities=13% Similarity=0.010 Sum_probs=49.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccC-CCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCC-----cc------cc---
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFY-FDCHAWVRVSISYDFRMVLDDIIKSVMPPSRV-----SV------II--- 67 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~-----~~------~~--- 67 (93)
.++.|.|.+|+|||+++.+++. +-... =+.++|++...+ ..++.+++. .++..... .. ..
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~--~~~~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLY--NGLKNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH--HHHHHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred cEEEEEeCCCCCcHHHHHHHHH--HhhhhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEeccccccc
Confidence 5789999999999999999775 22222 345677776543 355554433 33211000 00 00
Q ss_pred --CCCHHHHHHHHHHhcCC-CeEEEEeeC
Q 037564 68 --GEDYQLKKSILRDYLTN-KKYFIVLDD 93 (93)
Q Consensus 68 --~~~~~~l~~~l~~~L~~-kr~LlVlDD 93 (93)
..+.+.+...+.+.++. +...+|+|.
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDs 123 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDS 123 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEET
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 13667777777777644 335778874
No 315
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.86 E-value=9.8e-05 Score=46.67 Aligned_cols=39 Identities=8% Similarity=-0.096 Sum_probs=29.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCccc--ccCCCeeEEEEeCCC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHV--KFYFDCHAWVRVSIS 43 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~--~~~f~~~~wv~~~~~ 43 (93)
.++.|.|.+|+|||.||-.++. ++ ........+++...+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~--~l~~~~~~~~~~~l~~n~~ 42 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAK--ELQNSEEGKKVLYLCGNHP 42 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHH--HhhccccCCceEEEEecch
Confidence 4788999999999999999998 44 444555566665543
No 316
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.86 E-value=1.7e-05 Score=46.54 Aligned_cols=23 Identities=13% Similarity=-0.048 Sum_probs=20.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.+...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999874
No 317
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.86 E-value=1.8e-05 Score=47.55 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=16.6
Q ss_pred EEcCCCCcHHHHHHHHhcC
Q 037564 7 ILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 7 i~G~~G~GKTtLa~~~~~~ 25 (93)
|.||+|+||||+++.+.+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~ 19 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEW 19 (238)
T ss_dssp -EESTTSSHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHH
Confidence 6899999999999998884
No 318
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.86 E-value=1.3e-05 Score=46.02 Aligned_cols=21 Identities=5% Similarity=-0.121 Sum_probs=19.1
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+|+|+|+.|+||||+++.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 319
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.86 E-value=4.9e-05 Score=53.01 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=19.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+.++|++|+|||++|+.+++
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~aLa~ 620 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCKALAN 620 (857)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3578899999999999999887
No 320
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.85 E-value=6.5e-05 Score=52.22 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=18.7
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-+.++|++|+|||++|+.++.
T Consensus 202 n~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 202 NPILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred CeEEECCCCCCHHHHHHHHHH
Confidence 356999999999999999887
No 321
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=97.85 E-value=2.1e-05 Score=47.95 Aligned_cols=22 Identities=14% Similarity=0.084 Sum_probs=19.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
|.|+|.|-||+||||++..+..
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~ 22 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAA 22 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHH
Confidence 5789999999999998888776
No 322
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.85 E-value=1.3e-05 Score=49.02 Aligned_cols=21 Identities=14% Similarity=0.120 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+|+|.|.+|+||||+++.+..
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ 21 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTS 21 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999886
No 323
>PRK13973 thymidylate kinase; Provisional
Probab=97.85 E-value=7.1e-05 Score=44.19 Aligned_cols=22 Identities=5% Similarity=-0.176 Sum_probs=20.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..|++-|..|+||||+++.++.
T Consensus 4 ~~IviEG~dGsGKtTq~~~l~~ 25 (213)
T PRK13973 4 RFITFEGGEGAGKSTQIRLLAE 25 (213)
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999999988
No 324
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.85 E-value=1.8e-05 Score=47.21 Aligned_cols=23 Identities=13% Similarity=0.011 Sum_probs=20.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998873
No 325
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.84 E-value=1.8e-05 Score=46.47 Aligned_cols=23 Identities=17% Similarity=0.062 Sum_probs=20.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.+..-
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998773
No 326
>PRK04328 hypothetical protein; Provisional
Probab=97.84 E-value=7.4e-05 Score=45.15 Aligned_cols=39 Identities=8% Similarity=-0.034 Sum_probs=28.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSIS 43 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~ 43 (93)
.++.|.|.+|+|||+||.++.. +....-..++|++...+
T Consensus 24 s~ili~G~pGsGKT~l~~~fl~--~~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 24 NVVLLSGGPGTGKSIFSQQFLW--NGLQMGEPGVYVALEEH 62 (249)
T ss_pred cEEEEEcCCCCCHHHHHHHHHH--HHHhcCCcEEEEEeeCC
Confidence 5788999999999999999776 22223456788877653
No 327
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.84 E-value=1.7e-05 Score=47.26 Aligned_cols=22 Identities=14% Similarity=0.003 Sum_probs=19.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-.++|.|++|+|||||...+..
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3789999999999999998764
No 328
>PLN02348 phosphoribulokinase
Probab=97.84 E-value=1.4e-05 Score=51.02 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=20.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-+|+|.|.+|+||||+|+.+.+
T Consensus 50 ~IIGIaG~SGSGKSTfA~~L~~ 71 (395)
T PLN02348 50 VVIGLAADSGCGKSTFMRRLTS 71 (395)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999887
No 329
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.84 E-value=1.8e-05 Score=47.31 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||++.++.
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~G 50 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINR 50 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999876
No 330
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.84 E-value=1.9e-05 Score=46.61 Aligned_cols=23 Identities=13% Similarity=-0.048 Sum_probs=20.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.++.-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999873
No 331
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=97.84 E-value=1.8e-05 Score=46.48 Aligned_cols=24 Identities=4% Similarity=-0.162 Sum_probs=20.6
Q ss_pred CCceeeEEcCCCCcHHHHHHHHhc
Q 037564 1 FSGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 1 ~~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+..+|+++|+.|+||||.|+.+.+
T Consensus 1 ~~~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 1 MMLIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred CceEEEEecCCCCCHHHHHHHHHH
Confidence 346899999999999999997655
No 332
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=97.84 E-value=1.9e-05 Score=50.22 Aligned_cols=28 Identities=11% Similarity=-0.108 Sum_probs=23.2
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccC
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFY 31 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~ 31 (93)
+-+|+|+|.+|+|||||+..+.. +++..
T Consensus 5 ~~~i~i~G~~gsGKTTl~~~l~~--~l~~~ 32 (369)
T PRK14490 5 PFEIAFCGYSGSGKTTLITALVR--RLSER 32 (369)
T ss_pred CEEEEEEeCCCCCHHHHHHHHHH--HHhhC
Confidence 45899999999999999999887 44433
No 333
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.84 E-value=1.9e-05 Score=46.65 Aligned_cols=23 Identities=9% Similarity=0.005 Sum_probs=20.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.++.-
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998874
No 334
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=97.84 E-value=0.00015 Score=47.58 Aligned_cols=87 Identities=15% Similarity=0.151 Sum_probs=47.0
Q ss_pred ceeeEEcCCCCcHHHHHH-HHhcCcccccCCC-eeEEEEeCCCC-CHHHHHHHHHHhhCCCCCCcc-cc-C-CCHHHH--
Q 037564 3 GCKPILDSSSFDKTAFTA-DTYNNNHVKFYFD-CHAWVRVSISY-DFRMVLDDIIKSVMPPSRVSV-II-G-EDYQLK-- 74 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~-~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~ll~~il~~l~~~~~~~~-~~-~-~~~~~l-- 74 (93)
.-++|.|.+|+|||+||. .+.+. . .-+ .++++-+.+.. ...++.+.+.+.-......-. .. + ......
T Consensus 142 QR~~I~g~~g~GKt~Lal~~I~~q--~--~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~a 217 (485)
T CHL00059 142 QRELIIGDRQTGKTAVATDTILNQ--K--GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLA 217 (485)
T ss_pred CEEEeecCCCCCHHHHHHHHHHhc--c--cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHHH
Confidence 357899999999999965 45552 1 223 34777776544 456666665543211110000 00 0 111111
Q ss_pred ---HHHHHHhc--CCCeEEEEeeC
Q 037564 75 ---KSILRDYL--TNKKYFIVLDD 93 (93)
Q Consensus 75 ---~~~l~~~L--~~kr~LlVlDD 93 (93)
.-.+-+++ +++++|+|+||
T Consensus 218 p~~a~aiAEyfr~~G~~VLlv~Dd 241 (485)
T CHL00059 218 PYTGAALAEYFMYRGRHTLIIYDD 241 (485)
T ss_pred HHHHhhHHHHHHHcCCCEEEEEcC
Confidence 12244444 57899999997
No 335
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.84 E-value=1.8e-05 Score=46.52 Aligned_cols=23 Identities=9% Similarity=0.062 Sum_probs=20.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.+...
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 47899999999999999998874
No 336
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=97.83 E-value=2e-05 Score=46.75 Aligned_cols=24 Identities=13% Similarity=0.019 Sum_probs=21.4
Q ss_pred CCceeeEEcCCCCcHHHHHHHHhc
Q 037564 1 FSGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 1 ~~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
|..+|+|.|++|+||||+++.+..
T Consensus 1 ~~~~i~i~G~~GsGKst~~~~la~ 24 (217)
T TIGR00017 1 MAMIIAIDGPSGAGKSTVAKAVAE 24 (217)
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999986
No 337
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=97.83 E-value=6.6e-05 Score=49.30 Aligned_cols=52 Identities=13% Similarity=0.060 Sum_probs=36.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCC-CCHHHHHHHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSIS-YDFRMVLDDIIK 55 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~ll~~il~ 55 (93)
.-++|.|.+|+|||+|+..+..+. .+.+=+.++++-+.+. ....+++..++.
T Consensus 162 QR~gIfgg~GvGKs~L~~~~~~~~-~~~~~dv~V~~lIGERgrEv~efi~~~~~ 214 (494)
T CHL00060 162 GKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKE 214 (494)
T ss_pred CEEeeecCCCCChhHHHHHHHHHH-HHhcCCeEEEEEeccCchHHHHHHHHHHh
Confidence 457899999999999999877731 1111266778777654 455777777766
No 338
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.83 E-value=1.9e-05 Score=47.15 Aligned_cols=23 Identities=9% Similarity=0.008 Sum_probs=20.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.++.-
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 28 EFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998763
No 339
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=97.83 E-value=6.8e-05 Score=48.81 Aligned_cols=22 Identities=9% Similarity=0.033 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..++|.|.+|+|||||.+.+..
T Consensus 176 qri~I~G~sG~GKTTLL~~Ia~ 197 (455)
T PRK07960 176 QRMGLFAGSGVGKSVLLGMMAR 197 (455)
T ss_pred cEEEEECCCCCCccHHHHHHhC
Confidence 5789999999999999998887
No 340
>PF13245 AAA_19: Part of AAA domain
Probab=97.83 E-value=2.5e-05 Score=38.96 Aligned_cols=22 Identities=18% Similarity=-0.017 Sum_probs=16.1
Q ss_pred CceeeEEcCCCCcHHHHHHHHh
Q 037564 2 SGCKPILDSSSFDKTAFTADTY 23 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~ 23 (93)
+++..|.|++|.|||+++....
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i 31 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARI 31 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4567789999999995444433
No 341
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.83 E-value=2e-05 Score=46.28 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=20.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.+...
T Consensus 28 ~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 28 EFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998874
No 342
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.83 E-value=2.9e-05 Score=48.92 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=20.6
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+.+.|.|+.|+||||+.+.+..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~ 144 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMID 144 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36889999999999999998877
No 343
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=97.83 E-value=4.8e-05 Score=44.59 Aligned_cols=21 Identities=14% Similarity=0.053 Sum_probs=18.4
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+|+|.|+.-.||||||+.+..
T Consensus 6 ivgiSG~TnsGKTTLak~l~~ 26 (225)
T KOG3308|consen 6 IVGISGCTNSGKTTLAKSLHR 26 (225)
T ss_pred EEEeecccCCCHhHHHHHHHH
Confidence 688889988999999998765
No 344
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=97.83 E-value=0.00019 Score=38.62 Aligned_cols=20 Identities=20% Similarity=0.089 Sum_probs=18.5
Q ss_pred eeEEcCCCCcHHHHHHHHhc
Q 037564 5 KPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~ 24 (93)
|.+.|.+|+||||++..+..
T Consensus 2 i~~~GkgG~GKTt~a~~la~ 21 (116)
T cd02034 2 IAITGKGGVGKTTIAALLAR 21 (116)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998877
No 345
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=7.4e-05 Score=49.02 Aligned_cols=21 Identities=10% Similarity=0.011 Sum_probs=19.1
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+.++|++|+||||+|+.+++
T Consensus 42 a~Lf~GP~GtGKTTlAriLAk 62 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILAK 62 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999988
No 346
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.83 E-value=7.5e-05 Score=48.35 Aligned_cols=22 Identities=9% Similarity=-0.133 Sum_probs=19.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-+|+|.|..|+|||||++.+..
T Consensus 213 lIIGIsG~qGSGKSTLa~~L~~ 234 (460)
T PLN03046 213 LVIGFSAPQGCGKTTLVFALDY 234 (460)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999999999865
No 347
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=8.7e-05 Score=48.80 Aligned_cols=28 Identities=11% Similarity=0.010 Sum_probs=22.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYF 32 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f 32 (93)
+.+.++|++|.|||.||+++++ .....|
T Consensus 277 ~giLl~GpPGtGKT~lAkava~--~~~~~f 304 (494)
T COG0464 277 KGVLLYGPPGTGKTLLAKAVAL--ESRSRF 304 (494)
T ss_pred CeeEEECCCCCCHHHHHHHHHh--hCCCeE
Confidence 4578899999999999999999 444444
No 348
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.82 E-value=2.1e-05 Score=46.24 Aligned_cols=23 Identities=17% Similarity=0.043 Sum_probs=20.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.+..-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998873
No 349
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.82 E-value=2.1e-05 Score=46.63 Aligned_cols=22 Identities=9% Similarity=0.086 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||++.+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G 48 (227)
T cd03260 27 EITALIGPSGCGKSTLLRLLNR 48 (227)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999876
No 350
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=97.82 E-value=2e-05 Score=43.89 Aligned_cols=22 Identities=14% Similarity=0.149 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|+++|.+|+|||||...+.+.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999998764
No 351
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.82 E-value=2.1e-05 Score=47.06 Aligned_cols=23 Identities=17% Similarity=0.010 Sum_probs=20.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.+..-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 29 ELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999998874
No 352
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.82 E-value=4.8e-05 Score=51.09 Aligned_cols=22 Identities=9% Similarity=-0.062 Sum_probs=19.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+.++|++|+||||+|+.+.+
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lAk 60 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFAK 60 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999877
No 353
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.82 E-value=0.00033 Score=43.34 Aligned_cols=28 Identities=18% Similarity=0.096 Sum_probs=22.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYF 32 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f 32 (93)
.++.|.|.+|+|||||...+.. .+....
T Consensus 105 ~~v~l~G~pGsGKTTLl~~l~~--~l~~~~ 132 (290)
T PRK10463 105 LVLNLVSSPGSGKTTLLTETLM--RLKDSV 132 (290)
T ss_pred eEEEEECCCCCCHHHHHHHHHH--HhccCC
Confidence 4789999999999999999988 444433
No 354
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.82 E-value=2.1e-05 Score=46.93 Aligned_cols=23 Identities=9% Similarity=-0.002 Sum_probs=20.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.+...
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 28 EFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999863
No 355
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.82 E-value=2e-05 Score=45.16 Aligned_cols=22 Identities=14% Similarity=0.058 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||++.+..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999886
No 356
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.82 E-value=8.3e-05 Score=44.40 Aligned_cols=48 Identities=17% Similarity=0.155 Sum_probs=31.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccC-CCeeEEEEeCCCCCHHHHHHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFY-FDCHAWVRVSISYDFRMVLDDII 54 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~ll~~il 54 (93)
.++.|.|.+|+|||+++.+++.+ .... =....|+++.. +..++..+++
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~--~~~~~g~~vly~s~E~--~~~~~~~r~~ 62 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAEN--IAKKQGKPVLFFSLEM--SKEQLLQRLL 62 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCceEEEeCCC--CHHHHHHHHH
Confidence 47889999999999999988763 2222 23456666544 3444444443
No 357
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.81 E-value=2.2e-05 Score=45.90 Aligned_cols=23 Identities=9% Similarity=-0.060 Sum_probs=20.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||.+.++.-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998873
No 358
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.81 E-value=2.3e-05 Score=46.51 Aligned_cols=23 Identities=13% Similarity=0.020 Sum_probs=20.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.++.-
T Consensus 37 e~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 37 ETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 58999999999999999998873
No 359
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.81 E-value=9.8e-05 Score=43.85 Aligned_cols=38 Identities=13% Similarity=-0.120 Sum_probs=27.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSI 42 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~ 42 (93)
.++.|.|.+|+|||+++.++... ....-...+|++...
T Consensus 21 ~~~~i~G~~G~GKT~l~~~~~~~--~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 21 FFVAVTGEPGTGKTIFCLHFAYK--GLRDGDPVIYVTTEE 58 (229)
T ss_pred eEEEEECCCCCChHHHHHHHHHH--HHhcCCeEEEEEccC
Confidence 47889999999999999987652 222334567777644
No 360
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.81 E-value=2.2e-05 Score=43.56 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=21.2
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcC
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
+..|++.|..|+||||+...+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999998764
No 361
>PRK01184 hypothetical protein; Provisional
Probab=97.80 E-value=1.8e-05 Score=45.54 Aligned_cols=21 Identities=10% Similarity=0.058 Sum_probs=17.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+++|++|+||||+++ ++.
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~ 22 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAR 22 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHH
Confidence 378999999999999987 444
No 362
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=97.80 E-value=0.00014 Score=47.99 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=48.1
Q ss_pred ceeeEEcCCCCcHHHHH-HHHhcCcccccCCCe-eEEEEeCCCC-CHHHHHHHHHHhhCCCCCCcc--ccC-CCHHHH--
Q 037564 3 GCKPILDSSSFDKTAFT-ADTYNNNHVKFYFDC-HAWVRVSISY-DFRMVLDDIIKSVMPPSRVSV--IIG-EDYQLK-- 74 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa-~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~ll~~il~~l~~~~~~~~--~~~-~~~~~l-- 74 (93)
.-++|.|.+|+|||+|| ..+.+. . .-+. ++++-+.+.. ...++.+.+...-......-. ..+ ......
T Consensus 163 QR~~I~g~~g~GKt~Lal~~i~~~--~--~~dv~~V~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atsd~~~~~r~~a 238 (502)
T PRK13343 163 QRELIIGDRQTGKTAIAIDAIINQ--K--DSDVICVYVAIGQKASAVARVIETLREHGALEYTTVVVAEASDPPGLQYLA 238 (502)
T ss_pred CEEEeeCCCCCCccHHHHHHHHhh--c--CCCEEEEEEEeccChHHHHHHHHHHHhcCccceeEEEEecccccHHHHHHH
Confidence 45789999999999996 555552 1 2233 4777776654 445666665543211110000 000 111111
Q ss_pred ---HHHHHHhc--CCCeEEEEeeC
Q 037564 75 ---KSILRDYL--TNKKYFIVLDD 93 (93)
Q Consensus 75 ---~~~l~~~L--~~kr~LlVlDD 93 (93)
.-.+-+++ +++++|+++||
T Consensus 239 p~~a~aiAEyfrd~G~~VLlv~Dd 262 (502)
T PRK13343 239 PFAGCAIAEYFRDQGQDALIVYDD 262 (502)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecc
Confidence 12344555 67899999997
No 363
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.80 E-value=2.5e-05 Score=46.11 Aligned_cols=23 Identities=22% Similarity=0.044 Sum_probs=20.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|.|||||.+.++.-
T Consensus 14 e~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 14 EHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999873
No 364
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.80 E-value=3.1e-05 Score=43.96 Aligned_cols=23 Identities=13% Similarity=0.174 Sum_probs=21.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
+++.+.|.+|+|||||...+..+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 67899999999999999999886
No 365
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.80 E-value=2.4e-05 Score=46.19 Aligned_cols=23 Identities=13% Similarity=-0.084 Sum_probs=20.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999998873
No 366
>PRK12338 hypothetical protein; Provisional
Probab=97.79 E-value=2e-05 Score=49.18 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=20.9
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.+|.|.|.+|+||||+|+.+..
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~ 26 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELAR 26 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999887
No 367
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.79 E-value=0.0001 Score=44.54 Aligned_cols=29 Identities=7% Similarity=-0.134 Sum_probs=23.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFD 33 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~ 33 (93)
.-|.+||..|+||++|.+++++ ++.+..-
T Consensus 86 NnVLLwGaRGtGKSSLVKA~~~--e~~~~gl 114 (287)
T COG2607 86 NNVLLWGARGTGKSSLVKALLN--EYADEGL 114 (287)
T ss_pred cceEEecCCCCChHHHHHHHHH--HHHhcCC
Confidence 3578999999999999999998 5555443
No 368
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.79 E-value=2.5e-05 Score=46.49 Aligned_cols=23 Identities=13% Similarity=-0.018 Sum_probs=20.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.+..-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998764
No 369
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.79 E-value=0.00032 Score=45.89 Aligned_cols=88 Identities=11% Similarity=0.100 Sum_probs=55.8
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHHHHHHh
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDY 81 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~ 81 (93)
++-+=|.|-+|.|||.+...++.+..-...=...+++++..-.....+...|...+......+ .+..+....+..+
T Consensus 175 ~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~----~~~~~~~~~~~~h 250 (529)
T KOG2227|consen 175 SGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSP----GTGMQHLEKFEKH 250 (529)
T ss_pred CcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCC----chhHHHHHHHHHH
Confidence 455668899999999999998884221111123467776665667777777777763211111 2335666777777
Q ss_pred cCCC--eEEEEeeC
Q 037564 82 LTNK--KYFIVLDD 93 (93)
Q Consensus 82 L~~k--r~LlVlDD 93 (93)
.... -+|+|+|.
T Consensus 251 ~~q~k~~~llVlDE 264 (529)
T KOG2227|consen 251 TKQSKFMLLLVLDE 264 (529)
T ss_pred HhcccceEEEEech
Confidence 7443 47888884
No 370
>CHL00181 cbbX CbbX; Provisional
Probab=97.79 E-value=1.8e-05 Score=48.75 Aligned_cols=21 Identities=14% Similarity=0.067 Sum_probs=18.8
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-+.++|++|+||||+|+.+++
T Consensus 61 ~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999977
No 371
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.79 E-value=2.5e-05 Score=46.53 Aligned_cols=23 Identities=17% Similarity=-0.019 Sum_probs=20.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.++.-
T Consensus 36 e~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 36 EMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998863
No 372
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.79 E-value=2.5e-05 Score=47.28 Aligned_cols=23 Identities=17% Similarity=0.010 Sum_probs=20.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.++.-
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999998863
No 373
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.79 E-value=2.1e-05 Score=46.11 Aligned_cols=21 Identities=14% Similarity=0.036 Sum_probs=19.7
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+++|.|++|+|||||++.++.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhC
Confidence 789999999999999999886
No 374
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.79 E-value=2.2e-05 Score=44.46 Aligned_cols=22 Identities=14% Similarity=0.013 Sum_probs=20.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+++.|+|.+|+|||||+.++..
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999988
No 375
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.79 E-value=2.6e-05 Score=46.05 Aligned_cols=23 Identities=17% Similarity=-0.026 Sum_probs=20.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||.+.++..
T Consensus 32 ~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 32 EIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998863
No 376
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.78 E-value=2.5e-05 Score=47.07 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=21.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.+...
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999874
No 377
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.78 E-value=0.00028 Score=45.66 Aligned_cols=57 Identities=12% Similarity=-0.034 Sum_probs=35.8
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCCCee-EEEEeC-CCCCHHHHHHHHHHhhCCCC
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCH-AWVRVS-ISYDFRMVLDDIIKSVMPPS 61 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~-~wv~~~-~~~~~~~ll~~il~~l~~~~ 61 (93)
+.+|.++|.-|.||||-|-++++. ++. .... .-++.. ..+...+-++++.+++..+.
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~--lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKY--LKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHH--HHH-cCCceEEEecccCChHHHHHHHHHHHHcCCce
Confidence 358899999999999999888873 333 2222 222222 22344566777777776543
No 378
>PRK14529 adenylate kinase; Provisional
Probab=97.78 E-value=0.00012 Score=43.67 Aligned_cols=20 Identities=15% Similarity=-0.051 Sum_probs=18.5
Q ss_pred eeEEcCCCCcHHHHHHHHhc
Q 037564 5 KPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~ 24 (93)
|.+.|++|+||||+|+.+..
T Consensus 3 I~l~G~PGsGK~T~a~~La~ 22 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKK 22 (223)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999998877
No 379
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=97.78 E-value=0.00012 Score=48.20 Aligned_cols=87 Identities=14% Similarity=0.092 Sum_probs=49.5
Q ss_pred ceeeEEcCCCCcHHHHH-HHHhcCcccccCCCe-eEEEEeCCCC-CHHHHHHHHHHhhCCCCCCcc-c-cC-CCHHH---
Q 037564 3 GCKPILDSSSFDKTAFT-ADTYNNNHVKFYFDC-HAWVRVSISY-DFRMVLDDIIKSVMPPSRVSV-I-IG-EDYQL--- 73 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa-~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~ll~~il~~l~~~~~~~~-~-~~-~~~~~--- 73 (93)
.-++|.|.+|+|||||| ..+.+. . .-+. ++++-+.+.. ...++.+.+.+.-......-. . .+ .....
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~q--~--~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~~a 238 (497)
T TIGR03324 163 QRELILGDRQTGKTAIAIDTILNQ--K--GRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQYIA 238 (497)
T ss_pred CEEEeecCCCCCHHHHHHHHHHHh--c--CCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHHHH
Confidence 45789999999999996 466662 1 2343 6788787654 456666666654221110000 0 00 11111
Q ss_pred --HHHHHHHhc--CCCeEEEEeeC
Q 037564 74 --KKSILRDYL--TNKKYFIVLDD 93 (93)
Q Consensus 74 --l~~~l~~~L--~~kr~LlVlDD 93 (93)
..-.+-+++ +++++|+++||
T Consensus 239 p~~a~aiAEyfrd~G~~VLlv~Dd 262 (497)
T TIGR03324 239 PYAATSIGEHFMEQGRDVLIVYDD 262 (497)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcC
Confidence 122345555 67899999997
No 380
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.78 E-value=7.6e-05 Score=49.08 Aligned_cols=49 Identities=12% Similarity=0.135 Sum_probs=33.3
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHH
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDI 53 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i 53 (93)
.+++.|.|++|+||||+|.+++.. ...+.=+.++|++..+ +..++.+.+
T Consensus 21 g~~~Li~G~pGsGKT~la~qfl~~-g~~~~ge~~lyvs~eE--~~~~l~~~~ 69 (484)
T TIGR02655 21 GRSTLVSGTSGTGKTLFSIQFLYN-GIIHFDEPGVFVTFEE--SPQDIIKNA 69 (484)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH-HHHhCCCCEEEEEEec--CHHHHHHHH
Confidence 357889999999999999998652 1222125678888753 445554443
No 381
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.78 E-value=2.8e-05 Score=41.44 Aligned_cols=21 Identities=10% Similarity=0.175 Sum_probs=19.4
Q ss_pred eeEEcCCCCcHHHHHHHHhcC
Q 037564 5 KPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~~ 25 (93)
|+|.|++|+|||||.+.+...
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999973
No 382
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.78 E-value=1.9e-05 Score=54.08 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=21.7
Q ss_pred eeeEEcCCCCcHHHHHHHHhcCcccccCC
Q 037564 4 CKPILDSSSFDKTAFTADTYNNNHVKFYF 32 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f 32 (93)
-+.++|++|+||||||+.+++ .....|
T Consensus 54 slLL~GPpGtGKTTLA~aIA~--~~~~~f 80 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIAN--HTRAHF 80 (725)
T ss_pred eEEEECCCCCCHHHHHHHHHH--HhcCcc
Confidence 467899999999999999998 444344
No 383
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.78 E-value=2.7e-05 Score=45.24 Aligned_cols=23 Identities=9% Similarity=-0.029 Sum_probs=20.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|.+|.|||||++.+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 27 AITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998874
No 384
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.78 E-value=2e-05 Score=46.32 Aligned_cols=20 Identities=10% Similarity=-0.004 Sum_probs=18.5
Q ss_pred eeEEcCCCCcHHHHHHHHhc
Q 037564 5 KPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~ 24 (93)
|.|.|++|+||||+|+.+..
T Consensus 2 I~i~G~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAE 21 (210)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999876
No 385
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.78 E-value=2.7e-05 Score=45.45 Aligned_cols=23 Identities=13% Similarity=-0.077 Sum_probs=20.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|.|||||.+.+..-
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998863
No 386
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.78 E-value=3.8e-05 Score=44.02 Aligned_cols=40 Identities=10% Similarity=-0.137 Sum_probs=28.6
Q ss_pred eeeEEcCCCCcHHHHHHHHhcCcccc-cCCCeeEEEEeCCCCC
Q 037564 4 CKPILDSSSFDKTAFTADTYNNNHVK-FYFDCHAWVRVSISYD 45 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~~ 45 (93)
.+.+.|++|+|||.||+.+.. .+. ......+-+.++....
T Consensus 5 ~~ll~GpsGvGKT~la~~la~--~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAE--LLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGGHCS
T ss_pred EEEEECCCCCCHHHHHHHHHH--HhccCCccchHHHhhhcccc
Confidence 567899999999999999888 444 3444555666654333
No 387
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.78 E-value=2.5e-05 Score=46.09 Aligned_cols=22 Identities=14% Similarity=0.134 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||++.+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999998876
No 388
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.77 E-value=0.00012 Score=43.39 Aligned_cols=48 Identities=8% Similarity=-0.016 Sum_probs=32.0
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHH
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDI 53 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i 53 (93)
..++.|.|.+|+|||++|.+++. .....=..+.|++... ++.++.+.+
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~--~~~~~g~~~~y~s~e~--~~~~l~~~~ 63 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLY--QGLKNGEKAMYISLEE--REERILGYA 63 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCC--CHHHHHHHH
Confidence 35788999999999999998876 2222224566777655 344444443
No 389
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.77 E-value=2.7e-05 Score=46.10 Aligned_cols=23 Identities=9% Similarity=0.055 Sum_probs=20.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|.|||||.+.+...
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 32 ETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998863
No 390
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.77 E-value=2.5e-05 Score=45.94 Aligned_cols=23 Identities=13% Similarity=0.033 Sum_probs=20.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.+..-
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998863
No 391
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.77 E-value=0.00031 Score=46.45 Aligned_cols=86 Identities=8% Similarity=-0.056 Sum_probs=49.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCC-------cc---ccC-CCH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRV-------SV---IIG-EDY 71 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~-------~~---~~~-~~~ 71 (93)
.++.|.|.+|+|||+++.+++. .....-..++|++...+ ..++.+.+ +.++.+... .+ ... .+.
T Consensus 274 ~~~li~G~~G~GKT~l~~~~~~--~~~~~g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 274 SIILVSGATGTGKTLLASKFAE--AACRRGERCLLFAFEES--RAQLIRNA-RSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred cEEEEEcCCCCCHHHHHHHHHH--HHHhCCCcEEEEEecCC--HHHHHHHH-HHcCCChHHHhhcCCceeecCCcccCCH
Confidence 4778899999999999999887 33333456778876653 44554443 333321000 00 001 344
Q ss_pred HHHHHHHHHhcCC-CeEEEEeeC
Q 037564 72 QLKKSILRDYLTN-KKYFIVLDD 93 (93)
Q Consensus 72 ~~l~~~l~~~L~~-kr~LlVlDD 93 (93)
+.....+.+.+.. +.-++|+|.
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDs 371 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDP 371 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcC
Confidence 5666666666533 334778884
No 392
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=97.77 E-value=2.5e-05 Score=43.62 Aligned_cols=21 Identities=10% Similarity=0.071 Sum_probs=19.1
Q ss_pred eeEEcCCCCcHHHHHHHHhcC
Q 037564 5 KPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~~ 25 (93)
|.++|.+|+|||||..++...
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998874
No 393
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.77 E-value=2.3e-05 Score=52.57 Aligned_cols=22 Identities=27% Similarity=0.200 Sum_probs=20.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|++|+||||||+.+..
T Consensus 66 iIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHh
Confidence 4889999999999999999987
No 394
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.77 E-value=2.5e-05 Score=44.10 Aligned_cols=22 Identities=18% Similarity=0.054 Sum_probs=20.1
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.|+|+|.+|+|||||.+.+...
T Consensus 16 ~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 16 RILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred EEEEEccCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 395
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=97.76 E-value=2.8e-05 Score=45.43 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=18.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHh
Q 037564 3 GCKPILDSSSFDKTAFTADTY 23 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~ 23 (93)
++++|+|++|+|||||++.++
T Consensus 23 g~~~i~G~nGsGKStll~al~ 43 (197)
T cd03278 23 GLTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999876
No 396
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=97.76 E-value=5.9e-05 Score=45.70 Aligned_cols=22 Identities=14% Similarity=0.078 Sum_probs=19.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
++|+|.|-||+||||++..+..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~ 23 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSA 23 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHH
Confidence 5688889999999999988777
No 397
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.76 E-value=2.6e-05 Score=43.00 Aligned_cols=21 Identities=10% Similarity=0.036 Sum_probs=19.4
Q ss_pred eeEEcCCCCcHHHHHHHHhcC
Q 037564 5 KPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~~ 25 (93)
|+|+|.+|+|||||.+.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 789999999999999999875
No 398
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=97.76 E-value=2.8e-05 Score=45.76 Aligned_cols=22 Identities=9% Similarity=0.063 Sum_probs=19.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
|+|+|.|-||+||||++..+..
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~ 22 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSA 22 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHH
Confidence 5799999999999998877666
No 399
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=1.3e-05 Score=55.74 Aligned_cols=22 Identities=9% Similarity=-0.007 Sum_probs=19.3
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+.++|+.|+||||+|+.+++.
T Consensus 40 AyLFtGPpGtGKTTLARiLAk~ 61 (944)
T PRK14949 40 AYLFTGTRGVGKTSLARLFAKG 61 (944)
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999873
No 400
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.76 E-value=3e-05 Score=46.18 Aligned_cols=23 Identities=9% Similarity=0.013 Sum_probs=20.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.+..-
T Consensus 12 e~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 12 EFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998863
No 401
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=97.76 E-value=2.3e-05 Score=45.34 Aligned_cols=21 Identities=5% Similarity=0.025 Sum_probs=19.2
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+|+|.|+.|+||||+++.+..
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~ 21 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAE 21 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999998876
No 402
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.76 E-value=2.6e-05 Score=51.60 Aligned_cols=22 Identities=9% Similarity=0.006 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|+|.+|+||||||+.+..
T Consensus 318 E~lglVGeSGsGKSTlar~i~g 339 (539)
T COG1123 318 ETLGLVGESGSGKSTLARILAG 339 (539)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999886
No 403
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.76 E-value=3.1e-05 Score=45.31 Aligned_cols=23 Identities=13% Similarity=-0.090 Sum_probs=20.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||.+.++..
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 28 ELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998874
No 404
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.76 E-value=3e-05 Score=46.16 Aligned_cols=23 Identities=9% Similarity=-0.022 Sum_probs=20.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.++.-
T Consensus 13 e~~~i~G~nGsGKSTLl~~l~Gl 35 (230)
T TIGR02770 13 EVLALVGESGSGKSLTCLAILGL 35 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999998874
No 405
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.75 E-value=3.1e-05 Score=45.95 Aligned_cols=23 Identities=17% Similarity=0.030 Sum_probs=20.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.+...
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 34 EFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999998874
No 406
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.75 E-value=3.1e-05 Score=45.42 Aligned_cols=23 Identities=13% Similarity=-0.039 Sum_probs=20.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||.+.+..-
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999998873
No 407
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=97.75 E-value=2.7e-05 Score=43.56 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=19.2
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||+.++.+.
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3788999999999999998764
No 408
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.75 E-value=3.4e-05 Score=44.40 Aligned_cols=23 Identities=9% Similarity=-0.106 Sum_probs=20.7
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..++.+.|.+|+||||+|+.+..
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~ 40 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEK 40 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35889999999999999999887
No 409
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.75 E-value=2.9e-05 Score=46.28 Aligned_cols=23 Identities=9% Similarity=-0.013 Sum_probs=20.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.++.-
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 27 EIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred cEEEEECCCCCCHHHHHHHHcCC
Confidence 47899999999999999998863
No 410
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.75 E-value=0.00011 Score=49.62 Aligned_cols=53 Identities=2% Similarity=-0.165 Sum_probs=35.3
Q ss_pred eeeEEcCCCCcHHHHHHHHhcCcccccC-CCeeEEEEeCCCCCHHHHHHHHHHhhCC
Q 037564 4 CKPILDSSSFDKTAFTADTYNNNHVKFY-FDCHAWVRVSISYDFRMVLDDIIKSVMP 59 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~ll~~il~~l~~ 59 (93)
-+.++|++|+||||+|+.+.+ .+... |...+++. ....+...+++.++..++.
T Consensus 39 ~~ll~G~pG~GKT~la~~la~--~l~~~~~~~~~~~~-n~~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 39 NVLLIGEPGVGKSMLAKAMAE--LLPDEELEDILVYP-NPEDPNMPRIVEVPAGEGR 92 (608)
T ss_pred CEEEECCCCCCHHHHHHHHHH--HcCchhheeEEEEe-CCCCCchHHHHHHHHhhch
Confidence 356899999999999999998 55433 33333332 3334556677777776663
No 411
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=97.75 E-value=0.00013 Score=47.81 Aligned_cols=90 Identities=14% Similarity=0.205 Sum_probs=52.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccc---cCCCeeEEEEeCCC-CCHHHHHHHHHHhhCCCCCCcc-c-cCCC------
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVK---FYFDCHAWVRVSIS-YDFRMVLDDIIKSVMPPSRVSV-I-IGED------ 70 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~---~~f~~~~wv~~~~~-~~~~~ll~~il~~l~~~~~~~~-~-~~~~------ 70 (93)
.-++|.|.+|+|||+|+..+.++.... ..+ .++++.+.+. ....++++.+.+.-......-. . .+.+
T Consensus 144 QR~gIfgg~G~GKs~L~~~ia~~~~~d~~~~~~-v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 222 (460)
T PRK04196 144 QKLPIFSGSGLPHNELAAQIARQAKVLGEEENF-AVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERIL 222 (460)
T ss_pred CEEEeeCCCCCCccHHHHHHHHhhhhccCCCce-EEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHH
Confidence 457899999999999999988853321 111 5667777554 4556677777654211110000 0 0011
Q ss_pred HHHHHHHHHHhcC---CCeEEEEeeC
Q 037564 71 YQLKKSILRDYLT---NKKYFIVLDD 93 (93)
Q Consensus 71 ~~~l~~~l~~~L~---~kr~LlVlDD 93 (93)
.--..-.+-++++ ++++|+++||
T Consensus 223 a~~~a~tiAEyfr~d~G~~VLli~Ds 248 (460)
T PRK04196 223 TPRMALTAAEYLAFEKGMHVLVILTD 248 (460)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEcC
Confidence 1122234667765 4899999997
No 412
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.75 E-value=3.2e-05 Score=46.33 Aligned_cols=23 Identities=13% Similarity=-0.057 Sum_probs=20.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|.|||||++.++..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 28 EFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999998863
No 413
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.75 E-value=2.9e-05 Score=47.89 Aligned_cols=22 Identities=9% Similarity=-0.174 Sum_probs=19.7
Q ss_pred CceeeEEcCCCCcHHHHHHHHh
Q 037564 2 SGCKPILDSSSFDKTAFTADTY 23 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~ 23 (93)
..+|.|.|++|+||||+++.+.
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHHH
Confidence 3589999999999999999885
No 414
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.75 E-value=3.2e-05 Score=45.98 Aligned_cols=23 Identities=13% Similarity=-0.090 Sum_probs=20.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||.+.+..-
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998863
No 415
>PRK10908 cell division protein FtsE; Provisional
Probab=97.74 E-value=3.3e-05 Score=45.69 Aligned_cols=23 Identities=9% Similarity=-0.084 Sum_probs=20.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||.+.++..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999998864
No 416
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=97.74 E-value=3e-05 Score=43.62 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=19.1
Q ss_pred eeEEcCCCCcHHHHHHHHhcC
Q 037564 5 KPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~~ 25 (93)
|++.|.+|+|||||+..+.+.
T Consensus 3 i~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 3 VIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999998765
No 417
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.74 E-value=2.5e-05 Score=46.08 Aligned_cols=21 Identities=10% Similarity=-0.110 Sum_probs=19.1
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~ 22 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAE 22 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998876
No 418
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.74 E-value=8.6e-05 Score=51.82 Aligned_cols=20 Identities=15% Similarity=0.038 Sum_probs=18.3
Q ss_pred eeEEcCCCCcHHHHHHHHhc
Q 037564 5 KPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.++|++|+||||+|+.+..
T Consensus 211 ~lLvG~pGvGKTal~~~La~ 230 (852)
T TIGR03345 211 PILTGEAGVGKTAVVEGLAL 230 (852)
T ss_pred eeEECCCCCCHHHHHHHHHH
Confidence 46899999999999999887
No 419
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.74 E-value=3.3e-05 Score=45.33 Aligned_cols=23 Identities=17% Similarity=-0.028 Sum_probs=20.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.+...
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998874
No 420
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.74 E-value=3.3e-05 Score=46.26 Aligned_cols=23 Identities=13% Similarity=-0.044 Sum_probs=20.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.++..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 29 ETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998874
No 421
>PLN02165 adenylate isopentenyltransferase
Probab=97.74 E-value=2.9e-05 Score=48.70 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=20.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|+|+.|+|||+||..++.
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~ 65 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLAT 65 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 5899999999999999999887
No 422
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.74 E-value=9.4e-05 Score=47.87 Aligned_cols=28 Identities=11% Similarity=0.061 Sum_probs=22.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYF 32 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f 32 (93)
+-|.++|++|+|||++|+.+.. .+...|
T Consensus 48 ~~ILLiGppG~GKT~lAraLA~--~l~~~f 75 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIARRLAK--LANAPF 75 (441)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HhCCeE
Confidence 4578999999999999999988 444333
No 423
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.74 E-value=5.6e-05 Score=43.53 Aligned_cols=21 Identities=14% Similarity=0.050 Sum_probs=19.7
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+.|.|++|.||+||.+.++.
T Consensus 31 ~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHh
Confidence 578999999999999999987
No 424
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=2.4e-05 Score=49.45 Aligned_cols=21 Identities=14% Similarity=0.109 Sum_probs=19.2
Q ss_pred eeEEcCCCCcHHHHHHHHhcC
Q 037564 5 KPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~~ 25 (93)
|.++|++|.|||-||+++++.
T Consensus 188 VLLYGPPGTGKTLLAkAVA~~ 208 (406)
T COG1222 188 VLLYGPPGTGKTLLAKAVANQ 208 (406)
T ss_pred eEeeCCCCCcHHHHHHHHHhc
Confidence 568999999999999999993
No 425
>PRK02496 adk adenylate kinase; Provisional
Probab=97.74 E-value=2.6e-05 Score=44.84 Aligned_cols=20 Identities=10% Similarity=-0.085 Sum_probs=18.4
Q ss_pred eeEEcCCCCcHHHHHHHHhc
Q 037564 5 KPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.|.|++|+||||+|+.+..
T Consensus 4 i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999999876
No 426
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.74 E-value=0.0001 Score=51.44 Aligned_cols=21 Identities=14% Similarity=0.039 Sum_probs=18.8
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
++.++|++|+|||.||+.+..
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La~ 618 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALAE 618 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999998876
No 427
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.74 E-value=3.4e-05 Score=45.14 Aligned_cols=23 Identities=13% Similarity=-0.068 Sum_probs=20.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||.+.+...
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999998863
No 428
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.00024 Score=45.72 Aligned_cols=21 Identities=10% Similarity=-0.186 Sum_probs=18.3
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+.++|++|+||||+|+.+.+
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a~ 60 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFAK 60 (397)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999998776
No 429
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.73 E-value=3.4e-05 Score=46.22 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=20.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.++.-
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 30 AIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998873
No 430
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.73 E-value=0.00026 Score=43.77 Aligned_cols=21 Identities=10% Similarity=-0.105 Sum_probs=19.2
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+.++|++|+||||+++.+++
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~ 60 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALAR 60 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 468899999999999999987
No 431
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.73 E-value=0.00013 Score=50.12 Aligned_cols=21 Identities=10% Similarity=0.050 Sum_probs=19.1
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+.++|++|+|||+||+.++.
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~ 506 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAE 506 (731)
T ss_pred eEEEECCCCccHHHHHHHHHH
Confidence 467899999999999999988
No 432
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.73 E-value=3.4e-05 Score=46.13 Aligned_cols=23 Identities=9% Similarity=0.177 Sum_probs=20.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 27 EIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998874
No 433
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.73 E-value=3.6e-05 Score=45.13 Aligned_cols=23 Identities=9% Similarity=-0.093 Sum_probs=20.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|.+|.|||||++.+...
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 29 EALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999998874
No 434
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.73 E-value=3.5e-05 Score=46.36 Aligned_cols=23 Identities=9% Similarity=0.008 Sum_probs=20.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|.+|+|||||++.+...
T Consensus 30 e~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 30 TITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999998863
No 435
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.73 E-value=3.5e-05 Score=45.37 Aligned_cols=23 Identities=13% Similarity=-0.038 Sum_probs=20.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|.+|+|||||.+.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998873
No 436
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=97.73 E-value=0.00023 Score=47.04 Aligned_cols=87 Identities=17% Similarity=0.150 Sum_probs=46.5
Q ss_pred ceeeEEcCCCCcHHHHHH-HHhcCcccccCCCe-eEEEEeCCCC-CHHHHHHHHHHhhCCCCCCcc-cc-C-CCHHHH--
Q 037564 3 GCKPILDSSSFDKTAFTA-DTYNNNHVKFYFDC-HAWVRVSISY-DFRMVLDDIIKSVMPPSRVSV-II-G-EDYQLK-- 74 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~-~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~ll~~il~~l~~~~~~~~-~~-~-~~~~~l-- 74 (93)
.-++|.|.+|+|||+||. .+.+ +. .-+. ++++.+.+.. ...++.+.+.+.-......-. .. + ......
T Consensus 163 Qr~~Ifg~~g~GKt~lal~~i~~--~~--~~dv~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~~a 238 (502)
T PRK09281 163 QRELIIGDRQTGKTAIAIDTIIN--QK--GKDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQYLA 238 (502)
T ss_pred cEEEeecCCCCCchHHHHHHHHH--hc--CCCeEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHHHH
Confidence 457899999999999954 4444 21 2234 4777776654 445566665543211110000 00 0 111111
Q ss_pred ---HHHHHHhc--CCCeEEEEeeC
Q 037564 75 ---KSILRDYL--TNKKYFIVLDD 93 (93)
Q Consensus 75 ---~~~l~~~L--~~kr~LlVlDD 93 (93)
.-.+-+++ +++++|+|+||
T Consensus 239 ~~~a~tiAEyfrd~G~~VLli~Dd 262 (502)
T PRK09281 239 PYAGCAMGEYFMDNGKDALIVYDD 262 (502)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecC
Confidence 12234444 47899999997
No 437
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.73 E-value=3.7e-05 Score=44.43 Aligned_cols=22 Identities=14% Similarity=-0.011 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+.|.|+.|+||||+++.+..
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999998876
No 438
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.72 E-value=3.1e-05 Score=48.91 Aligned_cols=23 Identities=17% Similarity=0.059 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-.+++.|++|+|||||.+.++.-
T Consensus 32 ef~~lLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 32 EFVTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 36789999999999999998863
No 439
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=97.72 E-value=3.3e-05 Score=42.79 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=18.9
Q ss_pred eeEEcCCCCcHHHHHHHHhcC
Q 037564 5 KPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~~ 25 (93)
|.|+|++|+|||||...+...
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998753
No 440
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.72 E-value=3.7e-05 Score=46.65 Aligned_cols=23 Identities=9% Similarity=-0.015 Sum_probs=20.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||.+.+..-
T Consensus 39 e~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998873
No 441
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.72 E-value=7.8e-05 Score=41.53 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=19.6
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|..|+|||||++.+...
T Consensus 3 rimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 4778999999999999999874
No 442
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.72 E-value=3.7e-05 Score=44.59 Aligned_cols=22 Identities=14% Similarity=0.075 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.+..
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999986
No 443
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.72 E-value=3.8e-05 Score=45.94 Aligned_cols=23 Identities=13% Similarity=0.016 Sum_probs=20.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.+...
T Consensus 28 e~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 28 EVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998864
No 444
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.72 E-value=3.1e-05 Score=45.43 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=20.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
++|+++|..|+|||||..++.+
T Consensus 23 ~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 23 VVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999887
No 445
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.71 E-value=0.00014 Score=43.78 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-.|+|.|++|.|||||.+.+..
T Consensus 31 E~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 31 EMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred cEEEEECCCCCcHHHHHHHHhc
Confidence 3689999999999999999876
No 446
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.71 E-value=3.8e-05 Score=46.24 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.+..
T Consensus 33 e~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14242 33 QVTALIGPSGCGKSTFLRCLNR 54 (253)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4789999999999999999884
No 447
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.71 E-value=3.4e-05 Score=39.27 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=18.9
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
++.+.|.+|+||||++..+..
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~ 21 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAA 21 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999999887
No 448
>COG4639 Predicted kinase [General function prediction only]
Probab=97.71 E-value=9.1e-05 Score=41.80 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=20.4
Q ss_pred CCceeeEEcCCCCcHHHHHHHHhc
Q 037564 1 FSGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 1 ~~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
|.+++.+.|.+|+||+|.|+.-+.
T Consensus 1 ~~~LvvL~G~~~sGKsT~ak~n~~ 24 (168)
T COG4639 1 MRILVVLRGASGSGKSTFAKENFL 24 (168)
T ss_pred CceEEEEecCCCCchhHHHHHhCC
Confidence 457889999999999999998444
No 449
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.71 E-value=3.2e-05 Score=47.50 Aligned_cols=30 Identities=13% Similarity=0.020 Sum_probs=23.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCe
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDC 34 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~ 34 (93)
.+|.++||+|+||||..+++.. .++..+.+
T Consensus 20 ~~ilVvGMAGSGKTTF~QrL~~--hl~~~~~p 49 (366)
T KOG1532|consen 20 VIILVVGMAGSGKTTFMQRLNS--HLHAKKTP 49 (366)
T ss_pred cEEEEEecCCCCchhHHHHHHH--HHhhccCC
Confidence 3677889999999999999988 45544443
No 450
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.71 E-value=5.4e-05 Score=44.34 Aligned_cols=21 Identities=14% Similarity=-0.015 Sum_probs=19.7
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.|+|.|+.|+|||||.+.+.+
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~ 23 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTR 23 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 451
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=97.71 E-value=3.5e-05 Score=42.82 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=18.8
Q ss_pred eeEEcCCCCcHHHHHHHHhcC
Q 037564 5 KPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~~ 25 (93)
|.+.|.+|+|||||..++.+.
T Consensus 4 i~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 678999999999999998764
No 452
>PRK07429 phosphoribulokinase; Provisional
Probab=97.71 E-value=3.5e-05 Score=48.36 Aligned_cols=22 Identities=18% Similarity=0.095 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-+|+|.|.+|+||||+++.+..
T Consensus 9 ~IIgI~G~SGSGKSTla~~L~~ 30 (327)
T PRK07429 9 VLLGVAGDSGCGKTTFLRGLAD 30 (327)
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3789999999999999999887
No 453
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=97.71 E-value=0.00039 Score=42.95 Aligned_cols=79 Identities=13% Similarity=0.074 Sum_probs=52.8
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEE-EEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHHHHHH
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAW-VRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILRD 80 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~w-v~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 80 (93)
+....+.|++|+|||+-++.+++ . . +..| +..++.++...++..+......... .+..+....+..
T Consensus 94 g~l~~vyg~~g~gKt~a~~~y~~--s----~-p~~~l~~~~p~~~a~~~i~~i~~~~~~~~~------~~~~d~~~~~~~ 160 (297)
T COG2842 94 GSLVVVYGYAGLGKTQAAKNYAP--S----N-PNALLIEADPSYTALVLILIICAAAFGATD------GTINDLTERLMI 160 (297)
T ss_pred CceEEEeccccchhHHHHHhhcc--c----C-ccceeecCChhhHHHHHHHHHHHHHhcccc------hhHHHHHHHHHH
Confidence 34678899999999999999988 2 2 2333 3455566666666666655543322 456666777777
Q ss_pred hcCCCeEEEEeeC
Q 037564 81 YLTNKKYFIVLDD 93 (93)
Q Consensus 81 ~L~~kr~LlVlDD 93 (93)
.+++..-+++.|+
T Consensus 161 ~l~~~~~~iivDE 173 (297)
T COG2842 161 RLRDTVRLIIVDE 173 (297)
T ss_pred HHccCcceeeeeh
Confidence 7777766777763
No 454
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.71 E-value=4e-05 Score=45.71 Aligned_cols=23 Identities=17% Similarity=0.029 Sum_probs=20.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.+..-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 29 EVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998863
No 455
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.70 E-value=4.4e-05 Score=43.58 Aligned_cols=23 Identities=13% Similarity=0.072 Sum_probs=20.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|.|||||.+.+...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 47899999999999999998873
No 456
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.70 E-value=3.9e-05 Score=47.19 Aligned_cols=23 Identities=9% Similarity=0.049 Sum_probs=20.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.+..-
T Consensus 38 e~~~l~G~nGsGKSTLl~~l~Gl 60 (289)
T PRK13645 38 KVTCVIGTTGSGKSTMIQLTNGL 60 (289)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998763
No 457
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.70 E-value=8.5e-05 Score=44.53 Aligned_cols=21 Identities=19% Similarity=0.083 Sum_probs=18.1
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.|+|+|-||+||||+|..++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~ 22 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLK 22 (255)
T ss_pred eEEEecCCCccHHHHHHHHHH
Confidence 589999999999999887544
No 458
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=97.70 E-value=4e-05 Score=46.21 Aligned_cols=22 Identities=9% Similarity=0.024 Sum_probs=19.6
Q ss_pred CceeeEEcCCCCcHHHHHHHHh
Q 037564 2 SGCKPILDSSSFDKTAFTADTY 23 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~ 23 (93)
.++.+|+|++|.|||||+..++
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~ 46 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAIC 46 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3678999999999999999876
No 459
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.70 E-value=4.1e-05 Score=45.30 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=20.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|.+|.|||||++.++..
T Consensus 35 e~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 35 ECVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998864
No 460
>PRK13695 putative NTPase; Provisional
Probab=97.70 E-value=3.3e-05 Score=44.10 Aligned_cols=21 Identities=14% Similarity=0.056 Sum_probs=18.8
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.|+|.|.+|+|||||++.++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999876
No 461
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.70 E-value=4.1e-05 Score=46.34 Aligned_cols=22 Identities=5% Similarity=0.135 Sum_probs=20.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|+.|.|||||.+.++.
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999887
No 462
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.70 E-value=2.7e-05 Score=47.25 Aligned_cols=23 Identities=9% Similarity=0.034 Sum_probs=19.9
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.+|+|.|++|+||+||...+..
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~ 51 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIR 51 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHH
T ss_pred ceEEEeeCCCCCcHHHHHHHHHH
Confidence 46899999999999999998877
No 463
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.70 E-value=4.2e-05 Score=45.96 Aligned_cols=22 Identities=9% Similarity=0.167 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|.+|+|||||++.+..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G 49 (247)
T TIGR00972 28 QVTALIGPSGCGKSTLLRSLNR 49 (247)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999875
No 464
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.70 E-value=4.2e-05 Score=45.98 Aligned_cols=23 Identities=17% Similarity=0.005 Sum_probs=20.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.+...
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 30 EVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998763
No 465
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=97.70 E-value=5.1e-05 Score=46.41 Aligned_cols=22 Identities=5% Similarity=-0.064 Sum_probs=19.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
++|+|.|-||+||||++..+..
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~ 23 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAA 23 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHH
Confidence 4688889999999998888776
No 466
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.0001 Score=49.49 Aligned_cols=21 Identities=10% Similarity=-0.080 Sum_probs=18.6
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+.++|+.|+||||+|+.+.+
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA~ 60 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILAK 60 (585)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999876
No 467
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.70 E-value=3.4e-05 Score=45.87 Aligned_cols=22 Identities=14% Similarity=-0.076 Sum_probs=19.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+.|+|.+|+||||+|+.+..
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcCC
Confidence 4688999999999999998864
No 468
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.70 E-value=3.9e-05 Score=46.62 Aligned_cols=23 Identities=4% Similarity=0.007 Sum_probs=20.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|.+|+|||||++.++..
T Consensus 38 e~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 38 KVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred CEEEEECCCCCCHHHHHHHHcCC
Confidence 47899999999999999998864
No 469
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.70 E-value=4.3e-05 Score=44.95 Aligned_cols=23 Identities=13% Similarity=0.011 Sum_probs=20.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.++..
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 25 EIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999999874
No 470
>PRK14528 adenylate kinase; Provisional
Probab=97.70 E-value=3.7e-05 Score=44.50 Aligned_cols=21 Identities=5% Similarity=-0.124 Sum_probs=19.0
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.|.|.|++|+||||+|+.+..
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~ 23 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCE 23 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999999876
No 471
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.70 E-value=4.2e-05 Score=46.23 Aligned_cols=23 Identities=22% Similarity=0.096 Sum_probs=20.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.+...
T Consensus 32 e~~~l~G~nGsGKSTLl~~i~G~ 54 (257)
T PRK10619 32 DVISIIGSSGSGKSTFLRCINFL 54 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999998874
No 472
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.70 E-value=8.4e-05 Score=48.11 Aligned_cols=22 Identities=9% Similarity=0.068 Sum_probs=20.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+-|.+.|++|+|||+||+.+..
T Consensus 51 ~~ILliGp~G~GKT~LAr~LAk 72 (443)
T PRK05201 51 KNILMIGPTGVGKTEIARRLAK 72 (443)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999988
No 473
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.69 E-value=0.00015 Score=50.76 Aligned_cols=21 Identities=14% Similarity=0.147 Sum_probs=18.8
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-+.++|++|+|||++|+.+..
T Consensus 201 n~lL~G~pGvGKT~l~~~la~ 221 (857)
T PRK10865 201 NPVLIGEPGVGKTAIVEGLAQ 221 (857)
T ss_pred ceEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999888
No 474
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.69 E-value=4.6e-05 Score=43.67 Aligned_cols=23 Identities=13% Similarity=0.037 Sum_probs=20.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.+...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999998874
No 475
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.69 E-value=4.3e-05 Score=45.72 Aligned_cols=23 Identities=13% Similarity=-0.078 Sum_probs=20.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||.+.+...
T Consensus 30 e~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 30 EIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999998874
No 476
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.69 E-value=4e-05 Score=48.02 Aligned_cols=23 Identities=17% Similarity=0.125 Sum_probs=20.9
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
...|+|.|.+|+|||||++.+..
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~ 184 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAA 184 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999999887
No 477
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.69 E-value=4.2e-05 Score=47.94 Aligned_cols=23 Identities=13% Similarity=0.010 Sum_probs=20.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|+|.+|+|||||++.+..-
T Consensus 34 e~~~lvG~sGsGKSTL~~~l~Gl 56 (326)
T PRK11022 34 EVVGIVGESGSGKSVSSLAIMGL 56 (326)
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 47899999999999999998873
No 478
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=97.69 E-value=4.1e-05 Score=42.71 Aligned_cols=21 Identities=10% Similarity=0.162 Sum_probs=19.1
Q ss_pred eeEEcCCCCcHHHHHHHHhcC
Q 037564 5 KPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~~ 25 (93)
|.++|.+|+|||||...+.+.
T Consensus 3 v~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999864
No 479
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.69 E-value=4.3e-05 Score=46.21 Aligned_cols=22 Identities=9% Similarity=0.125 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.+..
T Consensus 31 e~~~i~G~nGsGKSTLl~~laG 52 (258)
T PRK14241 31 SVTAFIGPSGCGKSTVLRTLNR 52 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999886
No 480
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.69 E-value=4.4e-05 Score=45.63 Aligned_cols=23 Identities=9% Similarity=-0.127 Sum_probs=20.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|.+|+|||||++.+...
T Consensus 48 e~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 48 EIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998863
No 481
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.69 E-value=8.3e-05 Score=46.75 Aligned_cols=23 Identities=13% Similarity=-0.034 Sum_probs=20.6
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.+|+|.|.+|+|||||+..+..
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998776
No 482
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.69 E-value=4.3e-05 Score=41.86 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=20.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhcCc
Q 037564 4 CKPILDSSSFDKTAFTADTYNNN 26 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~~ 26 (93)
-|++.|.+|+|||||...+....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998864
No 483
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.68 E-value=4.6e-05 Score=44.94 Aligned_cols=23 Identities=9% Similarity=-0.086 Sum_probs=20.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|.|||||++.+..-
T Consensus 31 ~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 31 EKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999998863
No 484
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=2.3e-05 Score=53.38 Aligned_cols=29 Identities=10% Similarity=0.080 Sum_probs=24.4
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCC
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYF 32 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f 32 (93)
..+++.+|++|+|||++|+.++. .+...|
T Consensus 438 GkIlCf~GPPGVGKTSI~kSIA~--ALnRkF 466 (906)
T KOG2004|consen 438 GKILCFVGPPGVGKTSIAKSIAR--ALNRKF 466 (906)
T ss_pred CcEEEEeCCCCCCcccHHHHHHH--HhCCce
Confidence 36899999999999999999988 555554
No 485
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.68 E-value=9.9e-05 Score=41.31 Aligned_cols=21 Identities=10% Similarity=0.023 Sum_probs=18.9
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
++++.|.+|+||||++..+..
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999998877
No 486
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.68 E-value=4.5e-05 Score=45.30 Aligned_cols=23 Identities=13% Similarity=0.106 Sum_probs=20.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|.+|+|||||++.+..-
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 27 EVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998863
No 487
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=97.68 E-value=0.00035 Score=46.23 Aligned_cols=87 Identities=16% Similarity=0.188 Sum_probs=48.7
Q ss_pred ceeeEEcCCCCcHHHHH-HHHhcCcccccCCCe-eEEEEeCCCC-CHHHHHHHHHHhhCCCCCCcc-cc-CC-CHH----
Q 037564 3 GCKPILDSSSFDKTAFT-ADTYNNNHVKFYFDC-HAWVRVSISY-DFRMVLDDIIKSVMPPSRVSV-II-GE-DYQ---- 72 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa-~~~~~~~~~~~~f~~-~~wv~~~~~~-~~~~ll~~il~~l~~~~~~~~-~~-~~-~~~---- 72 (93)
.-++|.|.+|+|||+|| ..+.+. . .-+. ++++-+.+.. ...++.+.+...-......-. .. +. ...
T Consensus 162 Qr~~I~g~~g~GKt~Lal~~i~~~--~--~~dv~~V~~~IGer~rev~e~~~~~~~~~~l~~tvvV~atsd~p~~~r~~a 237 (501)
T TIGR00962 162 QRELIIGDRQTGKTAVAIDTIINQ--K--DSDVYCVYVAIGQKASTVAQVVRKLEEHGAMDYTIVVAATASDSASLQYLA 237 (501)
T ss_pred CEEEeecCCCCCccHHHHHHHHhh--c--CCCeEEEEEEccCChHHHHHHHHHHHhcCccceeEEEEecCCCCHHHHHHH
Confidence 45789999999999996 556552 1 2344 4777776644 456666666653221110000 00 01 111
Q ss_pred -HHHHHHHHhc--CCCeEEEEeeC
Q 037564 73 -LKKSILRDYL--TNKKYFIVLDD 93 (93)
Q Consensus 73 -~l~~~l~~~L--~~kr~LlVlDD 93 (93)
-..-.+-+++ +++++|+++||
T Consensus 238 ~~~a~aiAEyfrd~G~~VLlv~Dd 261 (501)
T TIGR00962 238 PYTGCTMAEYFRDNGKHALIIYDD 261 (501)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecc
Confidence 1122344454 57899999997
No 488
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.68 E-value=4.6e-05 Score=45.48 Aligned_cols=23 Identities=13% Similarity=0.024 Sum_probs=20.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|.+|+|||||++.+...
T Consensus 30 e~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 30 KTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred CEEEEEeCCCCCHHHHHHHHhcc
Confidence 57899999999999999998874
No 489
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.68 E-value=0.00024 Score=49.29 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.++.++|++|+||||+++.++.
T Consensus 350 ~~i~l~GppG~GKTtl~~~ia~ 371 (784)
T PRK10787 350 PILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999987
No 490
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=97.68 E-value=0.00018 Score=42.47 Aligned_cols=51 Identities=8% Similarity=-0.158 Sum_probs=32.4
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHH
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDII 54 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il 54 (93)
...|+|-|.-|+||||.++.+.. .++...-.+.|..-+.....-+.+++++
T Consensus 3 g~fI~iEGiDGaGKTT~~~~L~~--~l~~~g~~v~~trEP~~~~ige~iR~~l 53 (208)
T COG0125 3 GMFIVIEGIDGAGKTTQAELLKE--RLEERGIKVVLTREPGGTPIGEKIRELL 53 (208)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEeCCCCChHHHHHHHHH
Confidence 45789999999999999999988 5555443344443333323333444433
No 491
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.68 E-value=4.7e-05 Score=46.02 Aligned_cols=23 Identities=9% Similarity=0.052 Sum_probs=20.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.++.-
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999873
No 492
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=97.68 E-value=4.3e-05 Score=42.66 Aligned_cols=21 Identities=24% Similarity=0.159 Sum_probs=19.0
Q ss_pred eeEEcCCCCcHHHHHHHHhcC
Q 037564 5 KPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~~ 25 (93)
|.+.|.+|+|||||+.++...
T Consensus 3 i~v~G~~~vGKTsli~~l~~~ 23 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVEN 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998764
No 493
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.68 E-value=4.7e-05 Score=47.12 Aligned_cols=23 Identities=13% Similarity=-0.097 Sum_probs=20.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||.+.+..-
T Consensus 20 e~~~l~G~NGaGKSTLl~~l~Gl 42 (302)
T TIGR01188 20 EVFGFLGPNGAGKTTTIRMLTTL 42 (302)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998873
No 494
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.68 E-value=4.9e-05 Score=44.31 Aligned_cols=23 Identities=17% Similarity=0.020 Sum_probs=20.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|.|||||.+.+...
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999988774
No 495
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.67 E-value=4.5e-05 Score=46.66 Aligned_cols=23 Identities=4% Similarity=-0.006 Sum_probs=20.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.++.-
T Consensus 34 e~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 34 SYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998763
No 496
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.67 E-value=4.7e-05 Score=46.11 Aligned_cols=22 Identities=9% Similarity=0.119 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||++.+..
T Consensus 40 e~~~i~G~nGsGKSTLl~~l~G 61 (260)
T PRK10744 40 QVTAFIGPSGCGKSTLLRTFNR 61 (260)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999875
No 497
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.67 E-value=5.1e-05 Score=43.33 Aligned_cols=23 Identities=13% Similarity=0.018 Sum_probs=20.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999998874
No 498
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.67 E-value=4.7e-05 Score=45.87 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=20.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||.+.+..-
T Consensus 31 e~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 31 GVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999998763
No 499
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=4e-05 Score=48.63 Aligned_cols=22 Identities=9% Similarity=-0.049 Sum_probs=19.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+.++|++|+||||+|+.+++
T Consensus 39 h~~L~~Gp~G~GKTtla~~la~ 60 (363)
T PRK14961 39 HAWLLSGTRGVGKTTIARLLAK 60 (363)
T ss_pred eEEEEecCCCCCHHHHHHHHHH
Confidence 3567999999999999999887
No 500
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.67 E-value=4e-05 Score=42.61 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=18.5
Q ss_pred eeEEcCCCCcHHHHHHHHhc
Q 037564 5 KPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~ 24 (93)
|++.|.+|+|||||.+.+.+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 68999999999999999993
Done!