Query 037564
Match_columns 93
No_of_seqs 187 out of 1221
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 23:31:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037564.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037564hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 2E-23 6.8E-28 134.8 10.9 92 2-93 152-251 (549)
2 1vt4_I APAF-1 related killer D 99.8 1.2E-19 4.1E-24 123.5 6.0 92 2-93 150-252 (1221)
3 3sfz_A APAF-1, apoptotic pepti 99.8 4.5E-18 1.5E-22 116.5 9.2 92 2-93 147-244 (1249)
4 1z6t_A APAF-1, apoptotic prote 99.7 6.3E-17 2.2E-21 105.0 7.4 90 2-93 147-244 (591)
5 1w5s_A Origin recognition comp 99.4 4.9E-13 1.7E-17 83.3 8.1 86 3-93 51-146 (412)
6 2v1u_A Cell division control p 99.4 3.9E-12 1.3E-16 78.5 9.7 87 2-93 44-138 (387)
7 2qby_B CDC6 homolog 3, cell di 99.4 2.8E-12 9.6E-17 79.3 7.9 88 2-93 45-141 (384)
8 1fnn_A CDC6P, cell division co 99.3 2.5E-11 8.6E-16 75.0 10.6 85 4-93 46-133 (389)
9 2qby_A CDC6 homolog 1, cell di 99.3 4.6E-12 1.6E-16 78.1 6.2 87 2-93 45-136 (386)
10 3te6_A Regulatory protein SIR3 99.1 6.1E-10 2.1E-14 68.2 9.5 87 2-93 45-140 (318)
11 2qen_A Walker-type ATPase; unk 99.1 1E-10 3.6E-15 71.3 5.9 84 3-93 32-136 (350)
12 2fna_A Conserved hypothetical 99.0 2.5E-09 8.4E-14 65.3 9.2 48 3-55 31-83 (357)
13 2cvh_A DNA repair and recombin 98.8 3.9E-08 1.3E-12 56.6 8.8 85 3-93 21-113 (220)
14 2w58_A DNAI, primosome compone 98.8 1.5E-08 5E-13 57.9 6.0 36 3-40 55-90 (202)
15 2chg_A Replication factor C sm 98.8 3E-08 1E-12 56.6 6.5 21 4-24 40-60 (226)
16 1jbk_A CLPB protein; beta barr 98.7 5.4E-08 1.8E-12 54.4 6.0 22 3-24 44-65 (195)
17 3ec2_A DNA replication protein 98.6 5.8E-08 2E-12 54.6 5.3 22 3-24 39-60 (180)
18 1njg_A DNA polymerase III subu 98.6 3.6E-09 1.2E-13 61.2 0.2 22 3-24 46-67 (250)
19 2zr9_A Protein RECA, recombina 98.6 3.5E-07 1.2E-11 56.7 8.9 85 2-93 61-147 (349)
20 3hr8_A Protein RECA; alpha and 98.6 2.3E-07 7.9E-12 57.6 8.0 85 2-93 61-147 (356)
21 2z4s_A Chromosomal replication 98.6 1.1E-07 3.7E-12 60.5 6.3 27 3-31 131-157 (440)
22 2vhj_A Ntpase P4, P4; non- hyd 98.6 6.1E-08 2.1E-12 59.5 4.7 65 3-93 124-190 (331)
23 1xp8_A RECA protein, recombina 98.6 5.2E-07 1.8E-11 56.3 8.9 85 2-93 74-160 (366)
24 1u94_A RECA protein, recombina 98.6 3.3E-07 1.1E-11 56.9 7.5 84 2-93 63-149 (356)
25 1xwi_A SKD1 protein; VPS4B, AA 98.5 3.9E-07 1.3E-11 55.8 7.3 22 3-24 46-67 (322)
26 3h4m_A Proteasome-activating n 98.5 1.2E-07 4.1E-12 56.6 4.8 22 3-24 52-73 (285)
27 1qhx_A CPT, protein (chloramph 98.5 6.6E-08 2.3E-12 54.1 3.0 23 2-24 3-25 (178)
28 1sxj_B Activator 1 37 kDa subu 98.5 3.4E-07 1.2E-11 55.3 5.8 20 5-24 45-64 (323)
29 1n0w_A DNA repair protein RAD5 98.5 7.5E-07 2.5E-11 51.9 7.1 90 3-93 25-127 (243)
30 1v5w_A DMC1, meiotic recombina 98.5 1.1E-06 3.9E-11 54.2 7.9 55 3-58 123-181 (343)
31 1l8q_A Chromosomal replication 98.4 8.2E-07 2.8E-11 54.1 6.9 22 3-24 38-59 (324)
32 1ly1_A Polynucleotide kinase; 98.4 1.2E-07 4.2E-12 52.9 3.0 24 1-24 1-24 (181)
33 2qz4_A Paraplegin; AAA+, SPG7, 98.4 3.1E-07 1.1E-11 54.1 4.6 22 3-24 40-61 (262)
34 1ex7_A Guanylate kinase; subst 98.4 1.1E-07 3.8E-12 54.2 2.5 23 2-24 1-23 (186)
35 3cf0_A Transitional endoplasmi 98.4 1.1E-06 3.9E-11 53.1 7.0 22 3-24 50-71 (301)
36 2i1q_A DNA repair and recombin 98.4 7.7E-07 2.6E-11 54.3 6.1 90 3-93 99-212 (322)
37 3io5_A Recombination and repai 98.4 1.9E-06 6.6E-11 52.9 7.7 83 3-92 29-118 (333)
38 1lv7_A FTSH; alpha/beta domain 98.4 1.9E-06 6.5E-11 50.8 7.6 22 3-24 46-67 (257)
39 2z43_A DNA repair and recombin 98.4 1.4E-06 4.7E-11 53.4 7.0 91 2-93 107-211 (324)
40 1kag_A SKI, shikimate kinase I 98.4 2.4E-07 8.2E-12 51.5 3.2 23 2-24 4-26 (173)
41 1d2n_A N-ethylmaleimide-sensit 98.4 8.8E-07 3E-11 52.7 5.3 22 3-24 65-86 (272)
42 1zp6_A Hypothetical protein AT 98.4 2.9E-07 9.8E-12 52.0 3.1 23 3-25 10-32 (191)
43 2b8t_A Thymidine kinase; deoxy 98.4 2.2E-07 7.4E-12 54.4 2.6 83 3-93 13-97 (223)
44 2w0m_A SSO2452; RECA, SSPF, un 98.4 2.8E-06 9.5E-11 49.0 7.3 47 3-53 24-70 (235)
45 3b9p_A CG5977-PA, isoform A; A 98.4 6.9E-07 2.4E-11 53.7 4.9 22 3-24 55-76 (297)
46 3syl_A Protein CBBX; photosynt 98.3 1.1E-06 3.9E-11 52.9 5.7 21 4-24 69-89 (309)
47 3lw7_A Adenylate kinase relate 98.3 3E-07 1E-11 50.9 3.0 20 3-22 2-21 (179)
48 2px0_A Flagellar biosynthesis 98.3 4.4E-06 1.5E-10 50.7 8.2 23 2-24 105-127 (296)
49 2iyv_A Shikimate kinase, SK; t 98.3 2.9E-07 9.9E-12 51.8 2.8 24 1-24 1-24 (184)
50 3a00_A Guanylate kinase, GMP k 98.3 3.5E-07 1.2E-11 51.8 3.0 23 2-24 1-23 (186)
51 3bh0_A DNAB-like replicative h 98.3 1.5E-05 5.1E-10 48.7 10.4 50 3-56 69-118 (315)
52 3eie_A Vacuolar protein sortin 98.3 6.3E-07 2.2E-11 54.7 4.3 22 3-24 52-73 (322)
53 1kgd_A CASK, peripheral plasma 98.3 4.3E-07 1.5E-11 51.2 3.3 23 2-24 5-27 (180)
54 3kb2_A SPBC2 prophage-derived 98.3 3.3E-07 1.1E-11 50.8 2.8 22 3-24 2-23 (173)
55 2bdt_A BH3686; alpha-beta prot 98.3 4.1E-07 1.4E-11 51.4 2.9 23 2-24 2-24 (189)
56 3t61_A Gluconokinase; PSI-biol 98.3 4.4E-07 1.5E-11 51.8 3.0 22 3-24 19-40 (202)
57 3bos_A Putative DNA replicatio 98.3 5.2E-07 1.8E-11 52.3 3.2 36 3-40 53-88 (242)
58 2qp9_X Vacuolar protein sortin 98.3 1.3E-06 4.4E-11 54.1 5.0 21 4-24 86-106 (355)
59 1sxj_A Activator 1 95 kDa subu 98.3 1.6E-06 5.4E-11 56.1 5.5 22 3-24 78-99 (516)
60 3tr0_A Guanylate kinase, GMP k 98.3 6.2E-07 2.1E-11 51.1 3.2 22 3-24 8-29 (205)
61 3trf_A Shikimate kinase, SK; a 98.3 5.7E-07 1.9E-11 50.6 3.0 23 2-24 5-27 (185)
62 1vma_A Cell division protein F 98.3 5.5E-06 1.9E-10 50.5 7.4 22 3-24 105-126 (306)
63 3vaa_A Shikimate kinase, SK; s 98.3 5.4E-07 1.8E-11 51.4 2.8 22 3-24 26-47 (199)
64 3d8b_A Fidgetin-like protein 1 98.3 2.6E-06 8.8E-11 52.8 5.9 22 3-24 118-139 (357)
65 1kht_A Adenylate kinase; phosp 98.2 6.5E-07 2.2E-11 50.4 3.0 23 2-24 3-25 (192)
66 3uie_A Adenylyl-sulfate kinase 98.2 7E-07 2.4E-11 51.0 3.1 22 3-24 26-47 (200)
67 2qor_A Guanylate kinase; phosp 98.2 6.2E-07 2.1E-11 51.4 2.8 22 3-24 13-34 (204)
68 2zan_A Vacuolar protein sortin 98.2 1.9E-06 6.6E-11 54.8 5.2 22 3-24 168-189 (444)
69 1e6c_A Shikimate kinase; phosp 98.2 7.3E-07 2.5E-11 49.5 3.0 24 1-24 1-24 (173)
70 3tau_A Guanylate kinase, GMP k 98.2 8.1E-07 2.8E-11 51.1 3.2 22 3-24 9-30 (208)
71 4eun_A Thermoresistant glucoki 98.2 8.4E-07 2.9E-11 50.7 3.2 22 3-24 30-51 (200)
72 2rhm_A Putative kinase; P-loop 98.2 7.4E-07 2.5E-11 50.3 2.9 23 2-24 5-27 (193)
73 1jjv_A Dephospho-COA kinase; P 98.2 9.7E-07 3.3E-11 50.5 3.3 23 2-24 2-24 (206)
74 3c8u_A Fructokinase; YP_612366 98.2 7.1E-07 2.4E-11 51.3 2.7 22 3-24 23-44 (208)
75 4b4t_K 26S protease regulatory 98.2 1.4E-06 4.8E-11 55.4 4.1 22 3-24 207-228 (428)
76 2j41_A Guanylate kinase; GMP, 98.2 9.9E-07 3.4E-11 50.2 3.2 23 2-24 6-28 (207)
77 3t15_A Ribulose bisphosphate c 98.2 7.9E-07 2.7E-11 53.7 2.9 22 3-24 37-58 (293)
78 1nks_A Adenylate kinase; therm 98.2 7.9E-07 2.7E-11 50.0 2.7 22 3-24 2-23 (194)
79 1knq_A Gluconate kinase; ALFA/ 98.2 1E-06 3.5E-11 49.1 3.1 22 3-24 9-30 (175)
80 1odf_A YGR205W, hypothetical 3 98.2 9.9E-06 3.4E-10 49.0 7.4 22 3-24 32-53 (290)
81 3lda_A DNA repair protein RAD5 98.2 7.3E-06 2.5E-10 51.7 7.1 55 3-58 179-237 (400)
82 4gp7_A Metallophosphoesterase; 98.2 9.7E-07 3.3E-11 49.4 2.9 22 3-24 10-31 (171)
83 4b4t_J 26S protease regulatory 98.2 1.6E-06 5.5E-11 54.7 4.1 22 3-24 183-204 (405)
84 3iij_A Coilin-interacting nucl 98.2 9.7E-07 3.3E-11 49.5 2.8 22 3-24 12-33 (180)
85 1lvg_A Guanylate kinase, GMP k 98.2 1E-06 3.4E-11 50.4 2.9 22 3-24 5-26 (198)
86 4b4t_L 26S protease subunit RP 98.2 1.7E-06 5.9E-11 55.1 4.2 22 3-24 216-237 (437)
87 1qf9_A UMP/CMP kinase, protein 98.2 1.1E-06 3.6E-11 49.5 2.9 23 2-24 6-28 (194)
88 4b4t_M 26S protease regulatory 98.2 1.3E-06 4.6E-11 55.5 3.6 22 3-24 216-237 (434)
89 1pzn_A RAD51, DNA repair and r 98.2 4.9E-06 1.7E-10 51.5 5.9 54 3-57 132-189 (349)
90 4b4t_H 26S protease regulatory 98.2 1.8E-06 6.1E-11 55.3 3.9 22 3-24 244-265 (467)
91 3asz_A Uridine kinase; cytidin 98.2 1.3E-06 4.3E-11 50.1 3.0 22 3-24 7-28 (211)
92 1via_A Shikimate kinase; struc 98.2 1.1E-06 3.8E-11 49.1 2.7 22 3-24 5-26 (175)
93 3kl4_A SRP54, signal recogniti 98.2 1.7E-05 5.9E-10 50.5 8.4 23 2-24 97-119 (433)
94 1cke_A CK, MSSA, protein (cyti 98.2 1.3E-06 4.6E-11 50.5 3.1 22 3-24 6-27 (227)
95 3ake_A Cytidylate kinase; CMP 98.2 1.4E-06 4.7E-11 49.7 3.1 24 1-24 1-24 (208)
96 3vfd_A Spastin; ATPase, microt 98.2 5.8E-06 2E-10 51.7 6.2 22 3-24 149-170 (389)
97 1tev_A UMP-CMP kinase; ploop, 98.2 1.2E-06 4.2E-11 49.3 2.8 23 2-24 3-25 (196)
98 2ze6_A Isopentenyl transferase 98.2 1.1E-06 3.9E-11 52.1 2.7 22 3-24 2-23 (253)
99 2bbw_A Adenylate kinase 4, AK4 98.2 1.5E-06 5.1E-11 51.1 3.2 21 3-23 28-48 (246)
100 2jaq_A Deoxyguanosine kinase; 98.2 1.2E-06 4.2E-11 49.7 2.8 21 4-24 2-22 (205)
101 3cf2_A TER ATPase, transitiona 98.1 4E-06 1.4E-10 56.9 5.6 22 3-24 239-260 (806)
102 2bwj_A Adenylate kinase 5; pho 98.1 1.4E-06 4.6E-11 49.4 2.9 23 2-24 12-34 (199)
103 3n70_A Transport activator; si 98.1 4.3E-06 1.5E-10 45.5 4.8 22 4-25 26-47 (145)
104 2q6t_A DNAB replication FORK h 98.1 2E-05 6.9E-10 50.1 8.5 50 2-55 200-250 (444)
105 1z6g_A Guanylate kinase; struc 98.1 1.5E-06 5.2E-11 50.4 3.1 22 3-24 24-45 (218)
106 2plr_A DTMP kinase, probable t 98.1 1.3E-06 4.6E-11 49.8 2.8 23 2-24 4-26 (213)
107 2c95_A Adenylate kinase 1; tra 98.1 1.5E-06 5E-11 49.2 2.9 22 3-24 10-31 (196)
108 1znw_A Guanylate kinase, GMP k 98.1 1.7E-06 5.8E-11 49.7 3.2 22 3-24 21-42 (207)
109 1ye8_A Protein THEP1, hypothet 98.1 1.7E-06 5.7E-11 48.9 3.1 21 4-24 2-22 (178)
110 3cmu_A Protein RECA, recombina 98.1 1.3E-05 4.5E-10 58.8 8.0 85 2-93 1427-1513(2050)
111 2if2_A Dephospho-COA kinase; a 98.1 1.4E-06 4.8E-11 49.7 2.7 22 3-24 2-23 (204)
112 2ffh_A Protein (FFH); SRP54, s 98.1 2.2E-05 7.4E-10 49.9 8.2 23 2-24 98-120 (425)
113 1y63_A LMAJ004144AAA protein; 98.1 1.8E-06 6.2E-11 48.7 3.0 22 3-24 11-32 (184)
114 1s96_A Guanylate kinase, GMP k 98.1 2E-06 6.7E-11 50.1 3.2 23 2-24 16-38 (219)
115 3ice_A Transcription terminati 98.1 1E-06 3.6E-11 55.5 2.1 39 3-44 175-216 (422)
116 2qt1_A Nicotinamide riboside k 98.1 1.9E-06 6.5E-11 49.3 3.1 22 3-24 22-43 (207)
117 3ney_A 55 kDa erythrocyte memb 98.1 2.1E-06 7.2E-11 49.4 3.2 22 3-24 20-41 (197)
118 1sky_E F1-ATPase, F1-ATP synth 98.1 4.9E-06 1.7E-10 53.5 5.1 51 3-55 152-204 (473)
119 2wwf_A Thymidilate kinase, put 98.1 2E-06 6.7E-11 49.2 3.1 23 2-24 10-32 (212)
120 1zuh_A Shikimate kinase; alpha 98.1 1.8E-06 6.3E-11 47.8 2.8 22 3-24 8-29 (168)
121 2cdn_A Adenylate kinase; phosp 98.1 2E-06 6.8E-11 49.0 3.0 22 3-24 21-42 (201)
122 3hu3_A Transitional endoplasmi 98.1 5.8E-06 2E-10 53.4 5.4 22 3-24 239-260 (489)
123 2kjq_A DNAA-related protein; s 98.1 1.2E-06 4.3E-11 48.1 2.1 22 3-24 37-58 (149)
124 3dm5_A SRP54, signal recogniti 98.1 2.4E-05 8.3E-10 50.0 8.1 23 2-24 100-122 (443)
125 2z0h_A DTMP kinase, thymidylat 98.1 6.4E-06 2.2E-10 46.5 5.1 21 4-24 2-22 (197)
126 4a1f_A DNAB helicase, replicat 98.1 2.2E-05 7.4E-10 48.6 7.6 50 2-55 46-95 (338)
127 2jeo_A Uridine-cytidine kinase 98.1 2.1E-06 7.1E-11 50.5 3.0 22 3-24 26-47 (245)
128 3cm0_A Adenylate kinase; ATP-b 98.1 1.9E-06 6.5E-11 48.4 2.8 22 3-24 5-26 (186)
129 3aez_A Pantothenate kinase; tr 98.1 2.1E-06 7.1E-11 52.5 3.1 22 3-24 91-112 (312)
130 2yvu_A Probable adenylyl-sulfa 98.1 2E-06 6.8E-11 48.5 2.8 22 3-24 14-35 (186)
131 1ltq_A Polynucleotide kinase; 98.1 2E-06 6.8E-11 51.8 3.0 24 1-24 1-24 (301)
132 2ce7_A Cell division protein F 98.1 5.4E-06 1.8E-10 53.4 5.0 21 4-24 51-71 (476)
133 1nn5_A Similar to deoxythymidy 98.1 2.1E-06 7.3E-11 49.1 2.9 23 2-24 9-31 (215)
134 3m6a_A ATP-dependent protease 98.1 4.1E-06 1.4E-10 54.6 4.5 22 3-24 109-130 (543)
135 1j8m_F SRP54, signal recogniti 98.1 3.5E-05 1.2E-09 46.8 8.3 22 3-24 99-120 (297)
136 1in4_A RUVB, holliday junction 98.1 2E-06 6.7E-11 52.8 2.8 22 3-24 52-73 (334)
137 2p65_A Hypothetical protein PF 98.1 1.5E-06 5.1E-11 48.4 2.1 22 3-24 44-65 (187)
138 4b4t_I 26S protease regulatory 98.1 3.4E-06 1.2E-10 53.6 3.9 22 3-24 217-238 (437)
139 1hqc_A RUVB; extended AAA-ATPa 98.1 4.6E-06 1.6E-10 50.5 4.4 22 3-24 39-60 (324)
140 2vli_A Antibiotic resistance p 98.1 1.4E-06 4.9E-11 48.7 2.0 22 3-24 6-27 (183)
141 1q57_A DNA primase/helicase; d 98.1 4E-05 1.4E-09 49.4 8.8 49 3-55 243-292 (503)
142 4a74_A DNA repair and recombin 98.1 1.7E-05 5.9E-10 45.7 6.6 22 3-24 26-47 (231)
143 2v54_A DTMP kinase, thymidylat 98.1 2.5E-06 8.7E-11 48.5 3.0 23 2-24 4-26 (204)
144 3hjn_A DTMP kinase, thymidylat 98.1 7.6E-06 2.6E-10 46.9 4.9 86 4-92 2-88 (197)
145 2ehv_A Hypothetical protein PH 98.1 2.9E-06 1E-10 49.5 3.2 22 3-24 31-52 (251)
146 1ukz_A Uridylate kinase; trans 98.1 2.5E-06 8.6E-11 48.6 2.8 22 3-24 16-37 (203)
147 1gvn_B Zeta; postsegregational 98.1 2.1E-06 7.2E-11 51.8 2.6 22 3-24 34-55 (287)
148 2pbr_A DTMP kinase, thymidylat 98.1 2.5E-06 8.5E-11 48.1 2.8 21 4-24 2-22 (195)
149 4e22_A Cytidylate kinase; P-lo 98.1 2.7E-06 9.3E-11 50.3 3.0 21 3-23 28-48 (252)
150 3a4m_A L-seryl-tRNA(SEC) kinas 98.1 2.4E-06 8.3E-11 50.7 2.8 22 3-24 5-26 (260)
151 1uf9_A TT1252 protein; P-loop, 98.1 2.6E-06 8.8E-11 48.4 2.8 22 3-24 9-30 (203)
152 2pt5_A Shikimate kinase, SK; a 98.0 2.7E-06 9.2E-11 47.0 2.8 21 4-24 2-22 (168)
153 1rz3_A Hypothetical protein rb 98.0 3.1E-06 1.1E-10 48.4 3.0 22 3-24 23-44 (201)
154 3lnc_A Guanylate kinase, GMP k 98.0 1.7E-06 5.9E-11 50.3 2.0 21 3-23 28-48 (231)
155 3e70_C DPA, signal recognition 98.0 2.8E-05 9.7E-10 47.8 7.3 22 3-24 130-151 (328)
156 2dhr_A FTSH; AAA+ protein, hex 98.0 1.3E-05 4.4E-10 51.9 5.9 20 5-24 67-86 (499)
157 3u61_B DNA polymerase accessor 98.0 1.8E-05 6.3E-10 48.0 6.2 22 3-24 49-70 (324)
158 1htw_A HI0065; nucleotide-bind 98.0 4.2E-06 1.4E-10 46.5 3.1 22 3-24 34-55 (158)
159 1gtv_A TMK, thymidylate kinase 98.0 1.2E-06 4.3E-11 50.1 1.0 22 3-24 1-22 (214)
160 1ixz_A ATP-dependent metallopr 98.0 3E-06 1E-10 49.9 2.6 20 5-24 52-71 (254)
161 1zd8_A GTP:AMP phosphotransfer 98.0 3.5E-06 1.2E-10 48.9 2.9 22 3-24 8-29 (227)
162 3tif_A Uncharacterized ABC tra 98.0 4E-06 1.4E-10 49.3 3.1 22 3-24 32-53 (235)
163 2pez_A Bifunctional 3'-phospho 98.0 3.6E-06 1.2E-10 47.1 2.8 23 2-24 5-27 (179)
164 1rj9_A FTSY, signal recognitio 98.0 4.1E-06 1.4E-10 51.0 3.2 22 3-24 103-124 (304)
165 1fx0_B ATP synthase beta chain 98.0 8.1E-05 2.8E-09 48.2 9.2 52 3-56 166-219 (498)
166 2x8a_A Nuclear valosin-contain 98.0 3.1E-06 1.1E-10 50.8 2.6 20 5-24 47-66 (274)
167 1uj2_A Uridine-cytidine kinase 98.0 3.4E-06 1.2E-10 49.8 2.8 22 3-24 23-44 (252)
168 2pcj_A ABC transporter, lipopr 98.0 4E-06 1.4E-10 48.9 3.0 22 3-24 31-52 (224)
169 3umf_A Adenylate kinase; rossm 98.0 3.6E-06 1.2E-10 49.0 2.8 23 2-24 29-51 (217)
170 2r6a_A DNAB helicase, replicat 98.0 2.4E-05 8.1E-10 49.9 6.8 48 3-54 204-252 (454)
171 1aky_A Adenylate kinase; ATP:A 98.0 3.9E-06 1.3E-10 48.5 3.0 22 3-24 5-26 (220)
172 3fb4_A Adenylate kinase; psych 98.0 3.6E-06 1.2E-10 48.4 2.8 21 4-24 2-22 (216)
173 1m7g_A Adenylylsulfate kinase; 98.0 3.9E-06 1.3E-10 48.3 2.8 23 2-24 25-47 (211)
174 3cmw_A Protein RECA, recombina 98.0 2.3E-05 7.7E-10 56.9 7.1 84 2-92 383-468 (1706)
175 1cr0_A DNA primase/helicase; R 98.0 1.8E-05 6.3E-10 47.6 5.9 22 3-24 36-57 (296)
176 2grj_A Dephospho-COA kinase; T 98.0 3.9E-06 1.4E-10 47.9 2.8 22 3-24 13-34 (192)
177 3nwj_A ATSK2; P loop, shikimat 98.0 4.2E-06 1.4E-10 49.7 3.0 23 2-24 48-70 (250)
178 3fwy_A Light-independent proto 98.0 4.3E-06 1.5E-10 51.2 3.1 23 2-24 48-70 (314)
179 2i3b_A HCR-ntpase, human cance 98.0 4.7E-06 1.6E-10 47.5 3.0 22 3-24 2-23 (189)
180 3cmu_A Protein RECA, recombina 98.0 3.4E-05 1.2E-09 56.7 7.9 84 2-92 383-468 (2050)
181 1zak_A Adenylate kinase; ATP:A 98.0 4.3E-06 1.5E-10 48.4 2.8 22 3-24 6-27 (222)
182 3dl0_A Adenylate kinase; phosp 98.0 4.3E-06 1.5E-10 48.1 2.8 21 4-24 2-22 (216)
183 1ls1_A Signal recognition part 98.0 4.6E-05 1.6E-09 46.2 7.4 23 2-24 98-120 (295)
184 2cbz_A Multidrug resistance-as 98.0 5.2E-06 1.8E-10 48.9 3.1 23 3-25 32-54 (237)
185 1vht_A Dephospho-COA kinase; s 98.0 4.6E-06 1.6E-10 48.1 2.8 22 3-24 5-26 (218)
186 1b0u_A Histidine permease; ABC 98.0 5.2E-06 1.8E-10 49.6 3.1 22 3-24 33-54 (262)
187 1sq5_A Pantothenate kinase; P- 98.0 4.8E-06 1.6E-10 50.7 2.9 22 3-24 81-102 (308)
188 2f1r_A Molybdopterin-guanine d 98.0 2.5E-06 8.4E-11 48.0 1.6 23 2-24 2-24 (171)
189 3d3q_A TRNA delta(2)-isopenten 98.0 4.9E-06 1.7E-10 51.4 3.0 22 3-24 8-29 (340)
190 3tqc_A Pantothenate kinase; bi 98.0 5E-06 1.7E-10 51.0 3.0 21 4-24 94-114 (321)
191 2onk_A Molybdate/tungstate ABC 98.0 5.4E-06 1.9E-10 48.9 3.0 22 3-24 25-46 (240)
192 1xjc_A MOBB protein homolog; s 98.0 5.5E-06 1.9E-10 46.6 2.8 22 3-24 5-26 (169)
193 3crm_A TRNA delta(2)-isopenten 97.9 5.3E-06 1.8E-10 51.0 3.0 23 2-24 5-27 (323)
194 1ypw_A Transitional endoplasmi 97.9 1.3E-05 4.5E-10 54.4 5.0 22 3-24 239-260 (806)
195 1g6h_A High-affinity branched- 97.9 6.1E-06 2.1E-10 49.1 3.1 22 3-24 34-55 (257)
196 2xxa_A Signal recognition part 97.9 7E-05 2.4E-09 47.7 8.1 23 2-24 100-122 (433)
197 4g1u_C Hemin import ATP-bindin 97.9 6.1E-06 2.1E-10 49.4 3.1 22 3-24 38-59 (266)
198 3b9q_A Chloroplast SRP recepto 97.9 5.9E-06 2E-10 50.3 3.1 22 3-24 101-122 (302)
199 1sgw_A Putative ABC transporte 97.9 5.9E-06 2E-10 48.0 2.9 22 3-24 36-57 (214)
200 3gfo_A Cobalt import ATP-bindi 97.9 6.1E-06 2.1E-10 49.6 3.1 22 3-24 35-56 (275)
201 1iy2_A ATP-dependent metallopr 97.9 4.7E-06 1.6E-10 49.8 2.6 20 5-24 76-95 (278)
202 1ji0_A ABC transporter; ATP bi 97.9 6.3E-06 2.2E-10 48.5 3.1 22 3-24 33-54 (240)
203 3co5_A Putative two-component 97.9 2.6E-06 8.9E-11 46.3 1.3 22 4-25 29-50 (143)
204 3tlx_A Adenylate kinase 2; str 97.9 5.6E-06 1.9E-10 48.7 2.8 22 3-24 30-51 (243)
205 2p5t_B PEZT; postsegregational 97.9 3.2E-06 1.1E-10 50.0 1.8 22 3-24 33-54 (253)
206 2dr3_A UPF0273 protein PH0284; 97.9 1E-05 3.4E-10 47.1 3.9 46 3-52 24-69 (247)
207 2olj_A Amino acid ABC transpor 97.9 6.6E-06 2.3E-10 49.2 3.1 22 3-24 51-72 (263)
208 3b85_A Phosphate starvation-in 97.9 5.1E-06 1.8E-10 48.0 2.5 22 3-24 23-44 (208)
209 2pze_A Cystic fibrosis transme 97.9 6.8E-06 2.3E-10 48.1 3.1 22 3-24 35-56 (229)
210 2d2e_A SUFC protein; ABC-ATPas 97.9 7.2E-06 2.5E-10 48.6 3.2 22 3-24 30-51 (250)
211 1np6_A Molybdopterin-guanine d 97.9 7.8E-06 2.7E-10 46.1 3.1 22 3-24 7-28 (174)
212 2ff7_A Alpha-hemolysin translo 97.9 7.2E-06 2.5E-10 48.5 3.1 22 3-24 36-57 (247)
213 2qgz_A Helicase loader, putati 97.9 8.4E-06 2.9E-10 49.7 3.4 22 3-24 153-174 (308)
214 2bjv_A PSP operon transcriptio 97.9 1.1E-05 3.8E-10 47.7 3.9 23 3-25 30-52 (265)
215 2f6r_A COA synthase, bifunctio 97.9 6.9E-06 2.3E-10 49.4 3.0 22 3-24 76-97 (281)
216 1zu4_A FTSY; GTPase, signal re 97.9 3E-05 1E-09 47.6 5.8 23 2-24 105-127 (320)
217 3bgw_A DNAB-like replicative h 97.9 9.5E-05 3.2E-09 47.2 8.3 49 2-54 197-245 (444)
218 2ghi_A Transport protein; mult 97.9 7.7E-06 2.6E-10 48.7 3.1 22 3-24 47-68 (260)
219 2zu0_C Probable ATP-dependent 97.9 8.2E-06 2.8E-10 48.8 3.2 22 3-24 47-68 (267)
220 1mv5_A LMRA, multidrug resista 97.9 7.4E-06 2.5E-10 48.3 2.9 22 3-24 29-50 (243)
221 4fcw_A Chaperone protein CLPB; 97.9 7.5E-06 2.6E-10 49.3 3.0 22 3-24 48-69 (311)
222 1vpl_A ABC transporter, ATP-bi 97.9 8E-06 2.8E-10 48.6 3.1 22 3-24 42-63 (256)
223 2ixe_A Antigen peptide transpo 97.9 8.2E-06 2.8E-10 48.9 3.1 22 3-24 46-67 (271)
224 4eaq_A DTMP kinase, thymidylat 97.9 1.6E-05 5.4E-10 46.5 4.2 22 3-24 27-48 (229)
225 4hlc_A DTMP kinase, thymidylat 97.9 1.1E-05 3.9E-10 46.5 3.5 31 1-33 1-31 (205)
226 2yz2_A Putative ABC transporte 97.9 8.8E-06 3E-10 48.6 3.1 22 3-24 34-55 (266)
227 2ck3_D ATP synthase subunit be 97.9 0.0002 6.9E-09 46.2 9.4 52 3-56 154-207 (482)
228 2r62_A Cell division protease 97.9 4.7E-06 1.6E-10 49.4 1.9 21 4-24 46-66 (268)
229 1qvr_A CLPB protein; coiled co 97.9 3.4E-05 1.2E-09 52.6 6.2 21 4-24 193-213 (854)
230 2qi9_C Vitamin B12 import ATP- 97.9 9E-06 3.1E-10 48.2 3.1 22 3-24 27-48 (249)
231 3uk6_A RUVB-like 2; hexameric 97.9 7.8E-06 2.7E-10 50.4 2.9 22 3-24 71-92 (368)
232 1e4v_A Adenylate kinase; trans 97.9 7.1E-06 2.4E-10 47.2 2.6 21 4-24 2-22 (214)
233 4edh_A DTMP kinase, thymidylat 97.9 3E-05 1E-09 44.9 5.2 22 3-24 7-28 (213)
234 2xb4_A Adenylate kinase; ATP-b 97.9 7.8E-06 2.7E-10 47.5 2.8 21 4-24 2-22 (223)
235 2ihy_A ABC transporter, ATP-bi 97.9 9E-06 3.1E-10 49.0 3.1 22 3-24 48-69 (279)
236 3pfi_A Holliday junction ATP-d 97.9 7.4E-06 2.5E-10 50.0 2.7 22 3-24 56-77 (338)
237 2eyu_A Twitching motility prot 97.9 9.6E-06 3.3E-10 48.4 3.1 22 3-24 26-47 (261)
238 2nq2_C Hypothetical ABC transp 97.9 9.6E-06 3.3E-10 48.2 3.0 22 3-24 32-53 (253)
239 3be4_A Adenylate kinase; malar 97.9 8.5E-06 2.9E-10 47.1 2.7 22 3-24 6-27 (217)
240 2og2_A Putative signal recogni 97.9 9.7E-06 3.3E-10 50.5 3.1 22 3-24 158-179 (359)
241 2vp4_A Deoxynucleoside kinase; 97.9 7.3E-06 2.5E-10 47.8 2.4 22 3-24 21-42 (230)
242 3zvl_A Bifunctional polynucleo 97.9 9.8E-06 3.4E-10 51.2 3.1 22 3-24 259-280 (416)
243 3r20_A Cytidylate kinase; stru 97.9 1.1E-05 3.6E-10 47.6 3.0 22 3-24 10-31 (233)
244 2v9p_A Replication protein E1; 97.8 1.1E-05 3.8E-10 49.2 3.2 22 3-24 127-148 (305)
245 3pvs_A Replication-associated 97.8 7.5E-06 2.6E-10 52.3 2.4 21 4-24 52-72 (447)
246 1ak2_A Adenylate kinase isoenz 97.8 1.2E-05 4.1E-10 46.9 3.1 22 3-24 17-38 (233)
247 1nlf_A Regulatory protein REPA 97.8 1.2E-05 4.2E-10 48.0 3.2 23 2-24 30-52 (279)
248 3vr4_D V-type sodium ATPase su 97.8 2.1E-05 7.1E-10 50.4 4.3 51 3-55 152-207 (465)
249 1ofh_A ATP-dependent HSL prote 97.8 1E-05 3.6E-10 48.5 2.8 22 3-24 51-72 (310)
250 3foz_A TRNA delta(2)-isopenten 97.8 1.1E-05 3.9E-10 49.3 3.0 23 2-24 10-32 (316)
251 1a7j_A Phosphoribulokinase; tr 97.8 3.8E-06 1.3E-10 50.8 0.9 22 3-24 6-27 (290)
252 3cmw_A Protein RECA, recombina 97.8 4.8E-05 1.6E-09 55.2 6.4 84 2-92 1431-1516(1706)
253 3hws_A ATP-dependent CLP prote 97.8 1.1E-05 3.6E-10 50.0 2.7 22 3-24 52-73 (363)
254 3a8t_A Adenylate isopentenyltr 97.8 1.3E-05 4.4E-10 49.6 3.0 22 3-24 41-62 (339)
255 2qe7_A ATP synthase subunit al 97.8 0.00018 6E-09 46.7 8.3 87 3-93 163-262 (502)
256 2pjz_A Hypothetical protein ST 97.8 1.4E-05 4.9E-10 47.7 3.1 22 3-24 31-52 (263)
257 3sr0_A Adenylate kinase; phosp 97.8 1.3E-05 4.3E-10 46.3 2.8 21 4-24 2-22 (206)
258 1fx0_A ATP synthase alpha chai 97.8 4.1E-05 1.4E-09 49.6 5.3 49 3-55 164-215 (507)
259 1um8_A ATP-dependent CLP prote 97.8 1.3E-05 4.5E-10 49.7 2.9 22 3-24 73-94 (376)
260 2zej_A Dardarin, leucine-rich 97.8 1.5E-05 5E-10 44.7 2.8 22 4-25 4-25 (184)
261 1tf7_A KAIC; homohexamer, hexa 97.8 9.8E-05 3.3E-09 47.9 6.9 22 3-24 282-303 (525)
262 1svm_A Large T antigen; AAA+ f 97.8 1.6E-05 5.6E-10 49.8 3.2 22 3-24 170-191 (377)
263 2bbs_A Cystic fibrosis transme 97.8 1.6E-05 5.5E-10 48.2 3.1 22 3-24 65-86 (290)
264 3kta_A Chromosome segregation 97.8 1.9E-05 6.4E-10 44.2 3.2 21 3-23 27-47 (182)
265 2yhs_A FTSY, cell division pro 97.8 1.5E-05 5.2E-10 51.5 3.1 22 3-24 294-315 (503)
266 1oix_A RAS-related protein RAB 97.8 1.7E-05 5.8E-10 44.8 2.9 22 4-25 31-52 (191)
267 3exa_A TRNA delta(2)-isopenten 97.8 1.5E-05 5.2E-10 48.9 2.8 23 2-24 3-25 (322)
268 2hf9_A Probable hydrogenase ni 97.8 1.6E-05 5.4E-10 45.9 2.8 23 3-25 39-61 (226)
269 2r9v_A ATP synthase subunit al 97.8 4.1E-05 1.4E-09 49.6 4.9 49 3-55 176-227 (515)
270 3sop_A Neuronal-specific septi 97.8 1.5E-05 5.1E-10 47.8 2.7 22 3-24 3-24 (270)
271 3nh6_A ATP-binding cassette SU 97.8 1.2E-05 4.3E-10 49.0 2.4 22 3-24 81-102 (306)
272 3fvq_A Fe(3+) IONS import ATP- 97.8 1.8E-05 6.3E-10 49.3 3.2 22 3-24 31-52 (359)
273 1lw7_A Transcriptional regulat 97.8 1.7E-05 5.9E-10 49.2 3.0 23 2-24 170-192 (365)
274 2wji_A Ferrous iron transport 97.8 2E-05 6.8E-10 43.4 3.0 23 3-25 4-26 (165)
275 2ocp_A DGK, deoxyguanosine kin 97.8 1.7E-05 5.8E-10 46.4 2.8 23 2-24 2-24 (241)
276 1q3t_A Cytidylate kinase; nucl 97.7 2.2E-05 7.5E-10 45.9 3.2 22 3-24 17-38 (236)
277 2f9l_A RAB11B, member RAS onco 97.7 1.9E-05 6.5E-10 44.8 2.9 22 4-25 7-28 (199)
278 3v9p_A DTMP kinase, thymidylat 97.7 3.3E-05 1.1E-09 45.3 3.9 22 3-24 26-47 (227)
279 1jr3_A DNA polymerase III subu 97.7 2E-05 6.8E-10 48.5 3.1 22 3-24 39-60 (373)
280 1z47_A CYSA, putative ABC-tran 97.7 2.1E-05 7.3E-10 48.9 3.2 22 3-24 42-63 (355)
281 3lv8_A DTMP kinase, thymidylat 97.7 6.3E-05 2.1E-09 44.3 5.0 22 3-24 28-49 (236)
282 3tui_C Methionine import ATP-b 97.7 2.2E-05 7.4E-10 49.1 3.2 22 3-24 55-76 (366)
283 1sxj_D Activator 1 41 kDa subu 97.7 1.7E-05 5.8E-10 48.5 2.6 20 5-24 61-80 (353)
284 4tmk_A Protein (thymidylate ki 97.7 7.5E-05 2.6E-09 43.3 5.2 52 2-55 3-55 (213)
285 2yyz_A Sugar ABC transporter, 97.7 2.4E-05 8.1E-10 48.8 3.2 22 3-24 30-51 (359)
286 2it1_A 362AA long hypothetical 97.7 2.3E-05 8E-10 48.8 3.2 22 3-24 30-51 (362)
287 2wsm_A Hydrogenase expression/ 97.7 2E-05 7E-10 45.2 2.8 22 3-24 31-52 (221)
288 1g29_1 MALK, maltose transport 97.7 2.4E-05 8.3E-10 48.9 3.2 22 3-24 30-51 (372)
289 2qmh_A HPR kinase/phosphorylas 97.7 2.5E-05 8.5E-10 45.1 2.9 23 2-24 34-56 (205)
290 1sxj_E Activator 1 40 kDa subu 97.7 1.7E-05 5.9E-10 48.6 2.5 20 5-24 39-58 (354)
291 3rlf_A Maltose/maltodextrin im 97.7 2.6E-05 8.9E-10 49.0 3.2 22 3-24 30-51 (381)
292 1v43_A Sugar-binding transport 97.7 2.6E-05 8.9E-10 48.8 3.2 22 3-24 38-59 (372)
293 1yrb_A ATP(GTP)binding protein 97.7 2.8E-05 9.4E-10 45.8 3.1 22 3-24 15-36 (262)
294 1iqp_A RFCS; clamp loader, ext 97.7 2.1E-05 7.2E-10 47.5 2.6 21 4-24 48-68 (327)
295 2wjg_A FEOB, ferrous iron tran 97.7 2.8E-05 9.7E-10 43.4 2.9 22 4-25 9-30 (188)
296 2j37_W Signal recognition part 97.7 0.00063 2.1E-08 44.2 9.4 22 3-24 102-123 (504)
297 3cf2_A TER ATPase, transitiona 97.7 0.00011 3.6E-09 50.2 6.0 22 3-24 512-533 (806)
298 3ld9_A DTMP kinase, thymidylat 97.7 5.3E-05 1.8E-09 44.3 4.1 22 3-24 22-43 (223)
299 1tue_A Replication protein E1; 97.7 1.8E-05 6E-10 45.9 2.0 21 4-24 60-80 (212)
300 1sxj_C Activator 1 40 kDa subu 97.7 2.3E-05 7.8E-10 48.1 2.6 20 5-24 49-68 (340)
301 3d31_A Sulfate/molybdate ABC t 97.7 2.1E-05 7.2E-10 48.8 2.4 22 3-24 27-48 (348)
302 2gza_A Type IV secretion syste 97.7 2.9E-05 1E-09 48.2 3.1 23 3-25 176-198 (361)
303 1p5z_B DCK, deoxycytidine kina 97.6 1.8E-05 6.3E-10 46.9 1.9 22 3-24 25-46 (263)
304 2h92_A Cytidylate kinase; ross 97.6 3.1E-05 1.1E-09 44.5 2.8 22 3-24 4-25 (219)
305 3gqb_B V-type ATP synthase bet 97.6 3.1E-05 1.1E-09 49.6 3.0 53 3-55 148-210 (464)
306 2nzj_A GTP-binding protein REM 97.6 3.6E-05 1.2E-09 42.3 2.9 22 4-25 6-27 (175)
307 3l0o_A Transcription terminati 97.6 4E-06 1.4E-10 52.9 -1.1 22 3-24 176-197 (427)
308 2ck3_A ATP synthase subunit al 97.6 7.8E-05 2.7E-09 48.4 4.7 53 3-55 163-222 (510)
309 1ojl_A Transcriptional regulat 97.6 4.6E-05 1.6E-09 46.3 3.6 22 3-24 26-47 (304)
310 1nij_A Hypothetical protein YJ 97.6 2.4E-05 8.3E-10 47.8 2.3 23 3-25 5-27 (318)
311 2pt7_A CAG-ALFA; ATPase, prote 97.6 3.6E-05 1.2E-09 47.4 3.0 22 3-24 172-193 (330)
312 1oxx_K GLCV, glucose, ABC tran 97.6 1.8E-05 6.2E-10 49.2 1.7 22 3-24 32-53 (353)
313 3oaa_A ATP synthase subunit al 97.6 0.00044 1.5E-08 44.9 8.0 50 3-56 163-215 (513)
314 2v3c_C SRP54, signal recogniti 97.6 2.5E-05 8.7E-10 49.7 2.4 22 3-24 100-121 (432)
315 2ewv_A Twitching motility prot 97.6 3.3E-05 1.1E-09 48.3 2.8 22 3-24 137-158 (372)
316 2axn_A 6-phosphofructo-2-kinas 97.6 3.4E-05 1.2E-09 50.1 3.0 22 3-24 36-57 (520)
317 2dyk_A GTP-binding protein; GT 97.6 3.4E-05 1.2E-09 41.8 2.6 22 4-25 3-24 (161)
318 2r44_A Uncharacterized protein 97.6 2E-05 7E-10 48.0 1.8 21 4-24 48-68 (331)
319 3jvv_A Twitching mobility prot 97.6 3.5E-05 1.2E-09 47.9 2.9 22 3-24 124-145 (356)
320 3end_A Light-independent proto 97.6 7.4E-05 2.5E-09 45.1 4.3 23 2-24 41-63 (307)
321 2gj8_A MNME, tRNA modification 97.6 4.1E-05 1.4E-09 42.5 2.9 22 4-25 6-27 (172)
322 1z2a_A RAS-related protein RAB 97.6 4.2E-05 1.4E-09 41.7 2.9 22 4-25 7-28 (168)
323 3cr8_A Sulfate adenylyltranfer 97.6 2.5E-05 8.6E-10 51.1 2.2 22 3-24 370-391 (552)
324 2c9o_A RUVB-like 1; hexameric 97.6 3.7E-05 1.3E-09 49.1 3.0 22 3-24 64-85 (456)
325 2ce2_X GTPase HRAS; signaling 97.6 3.6E-05 1.2E-09 41.7 2.6 22 4-25 5-26 (166)
326 3gd7_A Fusion complex of cysti 97.6 4.3E-05 1.5E-09 48.1 3.2 22 3-24 48-69 (390)
327 2qm8_A GTPase/ATPase; G protei 97.6 4.3E-05 1.5E-09 47.1 3.1 22 3-24 56-77 (337)
328 3q85_A GTP-binding protein REM 97.6 4.6E-05 1.6E-09 41.7 3.0 21 4-24 4-24 (169)
329 3eph_A TRNA isopentenyltransfe 97.6 3.3E-05 1.1E-09 48.8 2.6 22 3-24 3-24 (409)
330 1pui_A ENGB, probable GTP-bind 97.6 2E-05 6.9E-10 44.8 1.5 23 3-25 27-49 (210)
331 1g8p_A Magnesium-chelatase 38 97.6 1.6E-05 5.5E-10 48.6 1.1 21 4-24 47-67 (350)
332 3nbx_X ATPase RAVA; AAA+ ATPas 97.6 3.6E-05 1.2E-09 49.8 2.8 22 3-24 42-63 (500)
333 1ega_A Protein (GTP-binding pr 97.6 3.9E-05 1.3E-09 46.6 2.7 24 2-25 8-31 (301)
334 2erx_A GTP-binding protein DI- 97.6 4.8E-05 1.6E-09 41.6 2.9 22 4-25 5-26 (172)
335 3q72_A GTP-binding protein RAD 97.6 4.1E-05 1.4E-09 41.8 2.6 22 4-25 4-25 (166)
336 2npi_A Protein CLP1; CLP1-PCF1 97.6 4.4E-05 1.5E-09 49.0 3.0 23 3-25 139-161 (460)
337 2ged_A SR-beta, signal recogni 97.6 4.3E-05 1.5E-09 42.8 2.6 22 4-25 50-71 (193)
338 2c61_A A-type ATP synthase non 97.6 4.4E-05 1.5E-09 49.1 2.9 54 3-56 153-209 (469)
339 3p32_A Probable GTPase RV1496/ 97.6 5.1E-05 1.7E-09 47.0 3.1 22 3-24 80-101 (355)
340 3con_A GTPase NRAS; structural 97.6 5.1E-05 1.8E-09 42.4 2.9 22 4-25 23-44 (190)
341 3mfy_A V-type ATP synthase alp 97.6 0.00024 8.2E-09 46.7 6.2 47 3-53 228-275 (588)
342 2r8r_A Sensor protein; KDPD, P 97.6 0.00013 4.4E-09 42.8 4.6 39 4-45 8-47 (228)
343 2ga8_A Hypothetical 39.9 kDa p 97.6 4.1E-05 1.4E-09 47.7 2.6 21 4-24 26-46 (359)
344 2qnr_A Septin-2, protein NEDD5 97.6 3.9E-05 1.3E-09 46.6 2.4 21 4-24 20-40 (301)
345 1kao_A RAP2A; GTP-binding prot 97.5 5E-05 1.7E-09 41.3 2.6 22 4-25 5-26 (167)
346 1u8z_A RAS-related protein RAL 97.5 5.8E-05 2E-09 41.0 2.9 22 4-25 6-27 (168)
347 1m7b_A RND3/RHOE small GTP-bin 97.5 4.8E-05 1.6E-09 42.5 2.6 22 4-25 9-30 (184)
348 4dzz_A Plasmid partitioning pr 97.5 0.00033 1.1E-08 39.6 6.1 41 3-45 2-43 (206)
349 1tq4_A IIGP1, interferon-induc 97.5 5.7E-05 1.9E-09 47.9 3.1 22 3-24 70-91 (413)
350 1cp2_A CP2, nitrogenase iron p 97.5 0.00013 4.5E-09 43.1 4.5 22 3-24 2-23 (269)
351 1z08_A RAS-related protein RAB 97.5 5.1E-05 1.8E-09 41.5 2.6 22 4-25 8-29 (170)
352 2yv5_A YJEQ protein; hydrolase 97.5 6.4E-05 2.2E-09 45.7 3.2 21 3-23 166-186 (302)
353 3fdi_A Uncharacterized protein 97.5 5E-05 1.7E-09 43.6 2.6 22 3-24 7-28 (201)
354 1c1y_A RAS-related protein RAP 97.5 6E-05 2.1E-09 41.0 2.9 22 4-25 5-26 (167)
355 1g41_A Heat shock protein HSLU 97.5 4.3E-05 1.5E-09 48.9 2.5 22 3-24 51-72 (444)
356 2chq_A Replication factor C sm 97.5 4.6E-05 1.6E-09 45.8 2.6 20 5-24 41-60 (319)
357 1ek0_A Protein (GTP-binding pr 97.5 5.3E-05 1.8E-09 41.3 2.6 22 4-25 5-26 (170)
358 3pxg_A Negative regulator of g 97.5 3.8E-05 1.3E-09 49.2 2.3 21 4-24 203-223 (468)
359 2orw_A Thymidine kinase; TMTK, 97.5 6.1E-05 2.1E-09 42.6 2.9 23 2-24 3-25 (184)
360 1fzq_A ADP-ribosylation factor 97.5 5.3E-05 1.8E-09 42.3 2.6 22 4-25 18-39 (181)
361 3tw8_B RAS-related protein RAB 97.5 5.5E-05 1.9E-09 41.7 2.7 22 4-25 11-32 (181)
362 2cxx_A Probable GTP-binding pr 97.5 5.9E-05 2E-09 42.0 2.8 22 4-25 3-24 (190)
363 1r8s_A ADP-ribosylation factor 97.5 5.7E-05 1.9E-09 41.1 2.6 20 5-24 3-22 (164)
364 3k1j_A LON protease, ATP-depen 97.5 0.00012 4.2E-09 48.2 4.6 22 3-24 61-82 (604)
365 2hxs_A RAB-26, RAS-related pro 97.5 6.5E-05 2.2E-09 41.4 2.9 22 4-25 8-29 (178)
366 1svi_A GTP-binding protein YSX 97.5 6.1E-05 2.1E-09 42.2 2.8 23 3-25 24-46 (195)
367 2obl_A ESCN; ATPase, hydrolase 97.5 5.8E-05 2E-09 46.8 2.9 22 3-24 72-93 (347)
368 2rcn_A Probable GTPase ENGC; Y 97.5 6.8E-05 2.3E-09 46.7 3.2 23 3-25 216-238 (358)
369 1ky3_A GTP-binding protein YPT 97.5 5.6E-05 1.9E-09 41.7 2.6 22 4-25 10-31 (182)
370 1z0j_A RAB-22, RAS-related pro 97.5 5.7E-05 2E-09 41.2 2.6 22 4-25 8-29 (170)
371 2www_A Methylmalonic aciduria 97.5 6.5E-05 2.2E-09 46.5 3.1 22 3-24 75-96 (349)
372 3ihw_A Centg3; RAS, centaurin, 97.5 5.7E-05 2E-09 42.4 2.6 22 4-25 22-43 (184)
373 3cbq_A GTP-binding protein REM 97.5 5.3E-05 1.8E-09 42.9 2.5 21 4-24 25-45 (195)
374 1f6b_A SAR1; gtpases, N-termin 97.5 4.7E-05 1.6E-09 43.2 2.3 22 4-25 27-48 (198)
375 2lkc_A Translation initiation 97.5 8.3E-05 2.8E-09 41.0 3.2 23 3-25 9-31 (178)
376 3pqc_A Probable GTP-binding pr 97.5 6.4E-05 2.2E-09 42.0 2.8 22 4-25 25-46 (195)
377 1nrj_B SR-beta, signal recogni 97.5 5.7E-05 2E-09 43.2 2.6 22 4-25 14-35 (218)
378 1wms_A RAB-9, RAB9, RAS-relate 97.5 5.9E-05 2E-09 41.5 2.6 22 4-25 9-30 (177)
379 1x6v_B Bifunctional 3'-phospho 97.5 5.6E-05 1.9E-09 50.2 2.8 22 3-24 53-74 (630)
380 1bif_A 6-phosphofructo-2-kinas 97.5 5.6E-05 1.9E-09 48.4 2.8 21 4-24 41-61 (469)
381 1r2q_A RAS-related protein RAB 97.5 6.3E-05 2.1E-09 41.0 2.6 22 4-25 8-29 (170)
382 1g16_A RAS-related protein SEC 97.5 6.1E-05 2.1E-09 41.1 2.6 22 4-25 5-26 (170)
383 2fn4_A P23, RAS-related protei 97.5 6E-05 2E-09 41.6 2.6 22 4-25 11-32 (181)
384 2qag_B Septin-6, protein NEDD5 97.5 6.2E-05 2.1E-09 47.9 2.8 21 5-25 45-65 (427)
385 1p9r_A General secretion pathw 97.5 6.4E-05 2.2E-09 47.7 2.9 22 3-24 168-189 (418)
386 3tmk_A Thymidylate kinase; pho 97.5 0.00017 5.9E-09 41.9 4.5 23 2-24 5-27 (216)
387 1m2o_B GTP-binding protein SAR 97.5 6.2E-05 2.1E-09 42.4 2.6 22 4-25 25-46 (190)
388 1g5t_A COB(I)alamin adenosyltr 97.5 7.4E-05 2.5E-09 42.9 2.9 21 4-24 30-50 (196)
389 1yqt_A RNAse L inhibitor; ATP- 97.5 7.4E-05 2.5E-09 48.8 3.2 22 3-24 48-69 (538)
390 1c9k_A COBU, adenosylcobinamid 97.5 0.00021 7.1E-09 40.5 4.6 21 4-24 1-21 (180)
391 3c5c_A RAS-like protein 12; GD 97.5 6.6E-05 2.3E-09 42.1 2.6 22 4-25 23-44 (187)
392 1z0f_A RAB14, member RAS oncog 97.5 6.9E-05 2.4E-09 41.3 2.6 22 4-25 17-38 (179)
393 3ozx_A RNAse L inhibitor; ATP 97.5 7.3E-05 2.5E-09 48.8 3.1 22 3-24 295-316 (538)
394 1m8p_A Sulfate adenylyltransfe 97.5 6.5E-05 2.2E-09 49.4 2.8 22 3-24 397-418 (573)
395 3ozx_A RNAse L inhibitor; ATP 97.5 6.8E-05 2.3E-09 49.0 2.9 22 3-24 26-47 (538)
396 3bc1_A RAS-related protein RAB 97.5 7.1E-05 2.4E-09 41.7 2.6 22 4-25 13-34 (195)
397 1upt_A ARL1, ADP-ribosylation 97.5 7.5E-05 2.6E-09 40.9 2.6 22 4-25 9-30 (171)
398 1yqt_A RNAse L inhibitor; ATP- 97.5 8.4E-05 2.9E-09 48.5 3.2 23 3-25 313-335 (538)
399 3kkq_A RAS-related protein M-R 97.5 8.6E-05 2.9E-09 41.2 2.9 22 4-25 20-41 (183)
400 2cjw_A GTP-binding protein GEM 97.5 8.5E-05 2.9E-09 42.0 2.9 21 4-24 8-28 (192)
401 4dsu_A GTPase KRAS, isoform 2B 97.5 7.4E-05 2.5E-09 41.5 2.6 22 4-25 6-27 (189)
402 2oil_A CATX-8, RAS-related pro 97.5 7.5E-05 2.6E-09 41.9 2.6 22 4-25 27-48 (193)
403 2bme_A RAB4A, RAS-related prot 97.5 7.5E-05 2.6E-09 41.5 2.6 22 4-25 12-33 (186)
404 1zbd_A Rabphilin-3A; G protein 97.5 9.1E-05 3.1E-09 41.9 2.9 22 4-25 10-31 (203)
405 2zts_A Putative uncharacterize 97.4 0.0001 3.5E-09 42.9 3.2 49 3-54 31-79 (251)
406 3t1o_A Gliding protein MGLA; G 97.4 7.8E-05 2.7E-09 41.7 2.6 21 4-24 16-36 (198)
407 3iev_A GTP-binding protein ERA 97.4 7.9E-05 2.7E-09 45.3 2.8 24 2-25 10-33 (308)
408 1mh1_A RAC1; GTP-binding, GTPa 97.4 8E-05 2.7E-09 41.3 2.6 22 4-25 7-28 (186)
409 2y8e_A RAB-protein 6, GH09086P 97.4 9E-05 3.1E-09 40.8 2.8 22 4-25 16-37 (179)
410 3euj_A Chromosome partition pr 97.4 8.5E-05 2.9E-09 48.0 3.0 22 3-24 30-51 (483)
411 3clv_A RAB5 protein, putative; 97.4 8E-05 2.7E-09 41.7 2.6 22 4-25 9-30 (208)
412 3lxx_A GTPase IMAP family memb 97.4 9.2E-05 3.2E-09 43.2 2.9 22 4-25 31-52 (239)
413 3kjh_A CO dehydrogenase/acetyl 97.4 0.00018 6.2E-09 41.8 4.2 39 5-45 3-41 (254)
414 2a9k_A RAS-related protein RAL 97.4 9.5E-05 3.3E-09 40.9 2.9 22 4-25 20-41 (187)
415 2afh_E Nitrogenase iron protei 97.4 0.00018 6.3E-09 43.1 4.3 22 3-24 3-24 (289)
416 3b60_A Lipid A export ATP-bind 97.4 9E-05 3.1E-09 48.7 3.1 22 3-24 370-391 (582)
417 1u0l_A Probable GTPase ENGC; p 97.4 9.4E-05 3.2E-09 44.9 3.0 23 3-25 170-192 (301)
418 3pxi_A Negative regulator of g 97.4 9.8E-05 3.4E-09 49.8 3.3 21 4-24 523-543 (758)
419 2iwr_A Centaurin gamma 1; ANK 97.4 5.3E-05 1.8E-09 41.9 1.8 22 4-25 9-30 (178)
420 3t5g_A GTP-binding protein RHE 97.4 9.5E-05 3.3E-09 40.9 2.8 22 4-25 8-29 (181)
421 3llu_A RAS-related GTP-binding 97.4 9.9E-05 3.4E-09 41.6 2.9 22 4-25 22-43 (196)
422 2atv_A RERG, RAS-like estrogen 97.4 8.4E-05 2.9E-09 41.9 2.6 22 4-25 30-51 (196)
423 1ksh_A ARF-like protein 2; sma 97.4 9.7E-05 3.3E-09 41.1 2.8 23 4-26 20-42 (186)
424 3gmt_A Adenylate kinase; ssgci 97.4 8.3E-05 2.8E-09 43.7 2.6 21 4-24 10-30 (230)
425 2p67_A LAO/AO transport system 97.4 9.7E-05 3.3E-09 45.5 3.0 22 3-24 57-78 (341)
426 3bk7_A ABC transporter ATP-bin 97.4 9.8E-05 3.4E-09 48.9 3.2 23 3-25 383-405 (607)
427 2efe_B Small GTP-binding prote 97.4 0.0001 3.4E-09 40.8 2.8 22 4-25 14-35 (181)
428 3bwd_D RAC-like GTP-binding pr 97.4 8.9E-05 3E-09 41.0 2.6 22 4-25 10-31 (182)
429 2g6b_A RAS-related protein RAB 97.4 9E-05 3.1E-09 40.9 2.6 22 4-25 12-33 (180)
430 2qag_C Septin-7; cell cycle, c 97.4 8.7E-05 3E-09 47.1 2.8 21 5-25 34-54 (418)
431 2dpy_A FLII, flagellum-specifi 97.4 9E-05 3.1E-09 47.3 2.9 22 3-24 158-179 (438)
432 1tf7_A KAIC; homohexamer, hexa 97.4 0.0001 3.4E-09 47.9 3.2 20 3-22 40-59 (525)
433 2q3h_A RAS homolog gene family 97.4 0.00011 3.6E-09 41.5 3.0 22 4-25 22-43 (201)
434 3b5x_A Lipid A export ATP-bind 97.4 9.7E-05 3.3E-09 48.5 3.1 22 3-24 370-391 (582)
435 1moz_A ARL1, ADP-ribosylation 97.4 6.5E-05 2.2E-09 41.7 2.0 22 4-25 20-41 (183)
436 3j16_B RLI1P; ribosome recycli 97.4 0.0001 3.5E-09 48.8 3.2 22 3-24 379-400 (608)
437 1vg8_A RAS-related protein RAB 97.4 9E-05 3.1E-09 41.9 2.6 22 4-25 10-31 (207)
438 4bas_A ADP-ribosylation factor 97.4 9.6E-05 3.3E-09 41.5 2.7 23 3-25 18-40 (199)
439 3j16_B RLI1P; ribosome recycli 97.4 0.0001 3.5E-09 48.8 3.2 22 3-24 104-125 (608)
440 1gwn_A RHO-related GTP-binding 97.4 8.8E-05 3E-09 42.4 2.6 22 4-25 30-51 (205)
441 2bov_A RAla, RAS-related prote 97.4 0.0001 3.6E-09 41.5 2.9 22 4-25 16-37 (206)
442 2ew1_A RAS-related protein RAB 97.4 9E-05 3.1E-09 42.2 2.6 22 4-25 28-49 (201)
443 1f2t_A RAD50 ABC-ATPase; DNA d 97.4 0.00013 4.3E-09 40.0 3.1 21 3-23 24-44 (149)
444 2o52_A RAS-related protein RAB 97.4 0.00011 3.7E-09 41.6 2.9 22 4-25 27-48 (200)
445 2fg5_A RAB-22B, RAS-related pr 97.4 9.2E-05 3.1E-09 41.6 2.6 22 4-25 25-46 (192)
446 1wf3_A GTP-binding protein; GT 97.4 9.7E-05 3.3E-09 44.9 2.8 24 2-25 7-30 (301)
447 3oes_A GTPase rhebl1; small GT 97.4 9.3E-05 3.2E-09 41.9 2.6 22 4-25 26-47 (201)
448 2b6h_A ADP-ribosylation factor 97.4 9.7E-05 3.3E-09 41.6 2.6 22 4-25 31-52 (192)
449 1g8f_A Sulfate adenylyltransfe 97.4 8.3E-05 2.8E-09 48.3 2.6 22 3-24 396-417 (511)
450 3dz8_A RAS-related protein RAB 97.4 9.6E-05 3.3E-09 41.5 2.6 22 4-25 25-46 (191)
451 1zj6_A ADP-ribosylation factor 97.4 0.00012 3.9E-09 41.0 2.9 22 4-25 18-39 (187)
452 2fh5_B SR-beta, signal recogni 97.4 9.7E-05 3.3E-09 42.1 2.6 22 4-25 9-30 (214)
453 3tkl_A RAS-related protein RAB 97.4 0.0001 3.4E-09 41.3 2.6 22 4-25 18-39 (196)
454 2qu8_A Putative nucleolar GTP- 97.4 0.00011 3.7E-09 42.5 2.8 23 3-25 30-52 (228)
455 1zd9_A ADP-ribosylation factor 97.4 0.0001 3.5E-09 41.3 2.6 22 4-25 24-45 (188)
456 2il1_A RAB12; G-protein, GDP, 97.4 0.00011 3.6E-09 41.4 2.7 22 4-25 28-49 (192)
457 2j1l_A RHO-related GTP-binding 97.4 0.00012 4E-09 42.0 2.9 22 4-25 36-57 (214)
458 3llm_A ATP-dependent RNA helic 97.4 0.00075 2.6E-08 39.3 6.4 90 3-93 77-184 (235)
459 3reg_A RHO-like small GTPase; 97.4 0.0001 3.6E-09 41.4 2.6 22 4-25 25-46 (194)
460 2gf9_A RAS-related protein RAB 97.4 0.00011 3.6E-09 41.2 2.6 22 4-25 24-45 (189)
461 3bk7_A ABC transporter ATP-bin 97.4 0.00011 3.8E-09 48.6 3.1 22 3-24 118-139 (607)
462 2oap_1 GSPE-2, type II secreti 97.4 0.00012 4E-09 47.6 3.1 22 3-24 261-282 (511)
463 2a5j_A RAS-related protein RAB 97.4 0.00011 3.7E-09 41.2 2.6 22 4-25 23-44 (191)
464 2gf0_A GTP-binding protein DI- 97.4 0.0001 3.5E-09 41.4 2.6 22 4-25 10-31 (199)
465 1z06_A RAS-related protein RAB 97.4 0.00011 3.7E-09 41.1 2.6 22 4-25 22-43 (189)
466 2g3y_A GTP-binding protein GEM 97.4 0.00013 4.5E-09 42.1 2.9 21 4-24 39-59 (211)
467 2p5s_A RAS and EF-hand domain 97.4 0.00011 3.9E-09 41.5 2.6 22 4-25 30-51 (199)
468 1x3s_A RAS-related protein RAB 97.4 0.00012 4E-09 41.0 2.6 22 4-25 17-38 (195)
469 3k53_A Ferrous iron transport 97.4 0.00012 4.2E-09 43.6 2.8 23 3-25 4-26 (271)
470 3zq6_A Putative arsenical pump 97.4 0.00036 1.2E-08 42.7 5.0 22 3-24 15-36 (324)
471 2h57_A ADP-ribosylation factor 97.4 0.00011 3.6E-09 41.2 2.4 22 4-25 23-44 (190)
472 2yl4_A ATP-binding cassette SU 97.4 9E-05 3.1E-09 48.8 2.4 23 3-25 371-393 (595)
473 2h17_A ADP-ribosylation factor 97.4 0.00011 3.9E-09 40.8 2.5 22 4-25 23-44 (181)
474 1ypw_A Transitional endoplasmi 97.3 6.6E-05 2.2E-09 51.1 1.7 22 3-24 512-533 (806)
475 3iqw_A Tail-anchored protein t 97.3 0.00038 1.3E-08 43.0 4.9 22 3-24 17-38 (334)
476 3q9l_A Septum site-determining 97.3 0.00036 1.2E-08 40.9 4.6 39 1-41 1-40 (260)
477 1t9h_A YLOQ, probable GTPase E 97.3 4.2E-05 1.4E-09 46.7 0.7 23 3-25 174-196 (307)
478 3io3_A DEHA2D07832P; chaperone 97.3 0.00035 1.2E-08 43.4 4.7 22 3-24 19-40 (348)
479 2bcg_Y Protein YP2, GTP-bindin 97.3 0.00013 4.3E-09 41.4 2.6 22 4-25 10-31 (206)
480 2f7s_A C25KG, RAS-related prot 97.3 0.00015 5.3E-09 41.3 2.9 22 4-25 27-48 (217)
481 3tqf_A HPR(Ser) kinase; transf 97.3 0.00016 5.5E-09 40.9 2.9 22 3-24 17-38 (181)
482 2atx_A Small GTP binding prote 97.3 0.00013 4.6E-09 40.9 2.6 22 4-25 20-41 (194)
483 3qf4_B Uncharacterized ABC tra 97.3 0.00011 3.9E-09 48.4 2.5 22 3-24 382-403 (598)
484 3pxi_A Negative regulator of g 97.3 9.7E-05 3.3E-09 49.8 2.3 21 4-24 203-223 (758)
485 4dkx_A RAS-related protein RAB 97.3 0.00014 4.9E-09 42.1 2.7 21 5-25 16-36 (216)
486 2fv8_A H6, RHO-related GTP-bin 97.3 0.00013 4.6E-09 41.4 2.6 22 4-25 27-48 (207)
487 2gk6_A Regulator of nonsense t 97.3 0.00023 7.7E-09 47.2 3.9 50 3-54 196-245 (624)
488 3igf_A ALL4481 protein; two-do 97.3 0.00012 4E-09 45.9 2.4 24 1-24 1-24 (374)
489 2j0v_A RAC-like GTP-binding pr 97.3 0.00014 4.8E-09 41.4 2.6 22 4-25 11-32 (212)
490 3cph_A RAS-related protein SEC 97.3 0.00017 5.8E-09 40.9 2.9 22 4-25 22-43 (213)
491 2fu5_C RAS-related protein RAB 97.3 7.7E-05 2.6E-09 41.4 1.4 22 4-25 10-31 (183)
492 4gzl_A RAS-related C3 botulinu 97.3 0.00015 5E-09 41.3 2.6 22 4-25 32-53 (204)
493 2hup_A RAS-related protein RAB 97.3 0.00015 5E-09 41.2 2.6 22 4-25 31-52 (201)
494 1u0j_A DNA replication protein 97.3 0.00017 5.7E-09 43.3 2.9 21 4-24 106-126 (267)
495 4a82_A Cystic fibrosis transme 97.3 9.5E-05 3.3E-09 48.5 1.9 22 3-24 368-389 (578)
496 2xtp_A GTPase IMAP family memb 97.3 0.00017 5.9E-09 42.5 2.9 23 3-25 23-45 (260)
497 2gco_A H9, RHO-related GTP-bin 97.3 0.00015 5.3E-09 41.0 2.6 22 4-25 27-48 (201)
498 3hdt_A Putative kinase; struct 97.3 0.00016 5.6E-09 42.2 2.7 22 3-24 15-36 (223)
499 3q3j_B RHO-related GTP-binding 97.3 0.00016 5.6E-09 41.4 2.6 22 4-25 29-50 (214)
500 3vr4_A V-type sodium ATPase ca 97.3 0.0024 8.1E-08 42.3 8.1 47 3-53 233-280 (600)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.90 E-value=2e-23 Score=134.82 Aligned_cols=92 Identities=13% Similarity=0.205 Sum_probs=77.0
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc--CcccccCCCeeEEEEeCCCC--CHHHHHHHHHHhhCCCCC-Ccc-ccC-CCHHHH
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN--NNHVKFYFDCHAWVRVSISY--DFRMVLDDIIKSVMPPSR-VSV-IIG-EDYQLK 74 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~--~~~~~~~f~~~~wv~~~~~~--~~~~ll~~il~~l~~~~~-~~~-~~~-~~~~~l 74 (93)
.++|+|+||||+||||||+++|+ +.++..+|+.++|+++++.. +...++..|+.++..... ... ..+ .+.+.+
T Consensus 152 ~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l 231 (549)
T 2a5y_B 152 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVL 231 (549)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHH
Confidence 37899999999999999999997 66889999999999999875 789999999999975421 111 122 466788
Q ss_pred HHHHHHhcCCC-eEEEEeeC
Q 037564 75 KSILRDYLTNK-KYFIVLDD 93 (93)
Q Consensus 75 ~~~l~~~L~~k-r~LlVlDD 93 (93)
...+++.|.++ ||||||||
T Consensus 232 ~~~l~~~L~~~kr~LlVLDd 251 (549)
T 2a5y_B 232 KRMICNALIDRPNTLFVFDD 251 (549)
T ss_dssp HHHHHHHHTTSTTEEEEEEE
T ss_pred HHHHHHHHcCCCcEEEEEEC
Confidence 99999999996 99999997
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.79 E-value=1.2e-19 Score=123.49 Aligned_cols=92 Identities=16% Similarity=0.058 Sum_probs=69.0
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCCCe-eEEEEeCCCCCHHHHHHHHHHhhCC---CCCCccc--c-C-CCHHH
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDC-HAWVRVSISYDFRMVLDDIIKSVMP---PSRVSVI--I-G-EDYQL 73 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~ll~~il~~l~~---~~~~~~~--~-~-~~~~~ 73 (93)
.++|+|+||||+||||||++++++.++..+|+. ++|+++++.++...++..+++.+.. ....... . . .+.+.
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~lee 229 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCcccccccccccCCCCCHHH
Confidence 379999999999999999999987678889987 8999999998888888887774321 1000000 0 0 24455
Q ss_pred HHHHHHHhc---CCCeEEEEeeC
Q 037564 74 KKSILRDYL---TNKKYFIVLDD 93 (93)
Q Consensus 74 l~~~l~~~L---~~kr~LlVlDD 93 (93)
+...+++.| .++|+||||||
T Consensus 230 L~e~Lr~lL~~l~~KRvLLVLDD 252 (1221)
T 1vt4_I 230 IQAELRRLLKSKPYENCLLVLLN 252 (1221)
T ss_dssp HHHHHHHHHHHSTTSSCEEEEES
T ss_pred HHHHHHHHHHhhcCCCEEEEEeC
Confidence 667777765 78999999998
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.75 E-value=4.5e-18 Score=116.47 Aligned_cols=92 Identities=18% Similarity=0.286 Sum_probs=68.1
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCccc-ccCC-CeeEEEEeCCCCC--HHHHHHHHHHhhCCCCCCccccCCCHHHHHHH
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHV-KFYF-DCHAWVRVSISYD--FRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSI 77 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~-~~~f-~~~~wv~~~~~~~--~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~ 77 (93)
.++|+|+||||+||||||++++++.+. ..+| +.++|+++++... ....+..++..+............+.+.+...
T Consensus 147 ~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 226 (1249)
T 3sfz_A 147 PGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDR 226 (1249)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHH
Confidence 368999999999999999999996433 4445 5566999988544 34446777777764332111111678889999
Q ss_pred HHHhcCCC--eEEEEeeC
Q 037564 78 LRDYLTNK--KYFIVLDD 93 (93)
Q Consensus 78 l~~~L~~k--r~LlVlDD 93 (93)
++..|.++ |+||||||
T Consensus 227 l~~~l~~~~~~~LlvlDd 244 (1249)
T 3sfz_A 227 LRVLMLRKHPRSLLILDD 244 (1249)
T ss_dssp HHHHTSSSSCSCEEEEES
T ss_pred HHHHHhccCCCEEEEEec
Confidence 99999877 99999998
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.69 E-value=6.3e-17 Score=104.97 Aligned_cols=90 Identities=19% Similarity=0.225 Sum_probs=63.7
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCccc-ccCCC-eeEEEEeCCCCCHHHHHHHH---HHhhCCCCCCccccC-CCHHHHH
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHV-KFYFD-CHAWVRVSISYDFRMVLDDI---IKSVMPPSRVSVIIG-EDYQLKK 75 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~-~~~f~-~~~wv~~~~~~~~~~ll~~i---l~~l~~~~~~~~~~~-~~~~~l~ 75 (93)
.++|+|+||+|+||||||.+++++.+. ..+|. .++|++++.. +...++..+ +..+....... ... .+.+.+.
T Consensus 147 ~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~~~l~~~~~~~-~~~~~~~~~~~ 224 (591)
T 1z6t_A 147 PGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQDESFS-QRLPLNIEEAK 224 (591)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHHHHHCSSCCSC-SSCCCSHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHHHHhccccccc-cCCCCCHHHHH
Confidence 468999999999999999999996555 67884 7899998765 333344333 44454211100 111 5777888
Q ss_pred HHHHHhcCC--CeEEEEeeC
Q 037564 76 SILRDYLTN--KKYFIVLDD 93 (93)
Q Consensus 76 ~~l~~~L~~--kr~LlVlDD 93 (93)
..+++.+.+ +++||||||
T Consensus 225 ~~l~~~l~~~~~~~LLVLDd 244 (591)
T 1z6t_A 225 DRLRILMLRKHPRSLLILDD 244 (591)
T ss_dssp HHHHHHHHHTCTTCEEEEEE
T ss_pred HHHHHHHccCCCCeEEEEeC
Confidence 888888865 789999997
No 5
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.44 E-value=4.9e-13 Score=83.31 Aligned_cols=86 Identities=19% Similarity=0.128 Sum_probs=62.2
Q ss_pred ceeeE--EcCCCCcHHHHHHHHhcCcccccC-----CC-eeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHH
Q 037564 3 GCKPI--LDSSSFDKTAFTADTYNNNHVKFY-----FD-CHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLK 74 (93)
Q Consensus 3 ~~i~i--~G~~G~GKTtLa~~~~~~~~~~~~-----f~-~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l 74 (93)
+.+.| +|++|+|||||++.+++ ..... +. ..+|+++....+...++..++.+++....... .+...+
T Consensus 51 ~~~li~i~G~~G~GKT~L~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~ 125 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAKFTVK--RVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRG---APALDI 125 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHHHHHH--HHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTT---CCHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHHHHHH--HHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCHHHH
Confidence 45666 99999999999999998 44331 22 34677766777888999999999864422111 456667
Q ss_pred HHHHHHhcC--CCeEEEEeeC
Q 037564 75 KSILRDYLT--NKKYFIVLDD 93 (93)
Q Consensus 75 ~~~l~~~L~--~kr~LlVlDD 93 (93)
...+.+.+. +++++|||||
T Consensus 126 ~~~l~~~l~~~~~~~llvlDe 146 (412)
T 1w5s_A 126 LKALVDNLYVENHYLLVILDE 146 (412)
T ss_dssp HHHHHHHHHHHTCEEEEEEES
T ss_pred HHHHHHHHHhcCCeEEEEEeC
Confidence 777777774 6789999997
No 6
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.39 E-value=3.9e-12 Score=78.49 Aligned_cols=87 Identities=16% Similarity=0.029 Sum_probs=63.5
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccC------CCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHH
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFY------FDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKK 75 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~------f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~ 75 (93)
++.+.|+|++|+||||+|+.+++ ..... -...+|+++....+...++..+++.+........ .+...+.
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~ 118 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLR--RLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTG---LSVGEVY 118 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHH--HHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSC---CCHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH--HHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCC---CCHHHHH
Confidence 35688999999999999999998 44321 1235677777888889999999999865332211 4566777
Q ss_pred HHHHHhc--CCCeEEEEeeC
Q 037564 76 SILRDYL--TNKKYFIVLDD 93 (93)
Q Consensus 76 ~~l~~~L--~~kr~LlVlDD 93 (93)
..+.+.+ .+++++|+|||
T Consensus 119 ~~l~~~l~~~~~~~vlilDE 138 (387)
T 2v1u_A 119 ERLVKRLSRLRGIYIIVLDE 138 (387)
T ss_dssp HHHHHHHTTSCSEEEEEEET
T ss_pred HHHHHHHhccCCeEEEEEcc
Confidence 7777777 34688999997
No 7
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.37 E-value=2.8e-12 Score=79.33 Aligned_cols=88 Identities=16% Similarity=0.056 Sum_probs=62.3
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccC--------CCeeEEEEeCCCC-CHHHHHHHHHHhhCCCCCCccccCCCHH
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFY--------FDCHAWVRVSISY-DFRMVLDDIIKSVMPPSRVSVIIGEDYQ 72 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~--------f~~~~wv~~~~~~-~~~~ll~~il~~l~~~~~~~~~~~~~~~ 72 (93)
++.+.|+|++|+|||+||+.+++ ..... ....+|+++.... +...++..++..+....... ...+..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~ 120 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFN--EIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPK--HGINLG 120 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH--HHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCS--SSSCTH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH--HHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCC--CCCCHH
Confidence 35789999999999999999998 43221 2345677766666 88888899888873221110 004556
Q ss_pred HHHHHHHHhcCCCeEEEEeeC
Q 037564 73 LKKSILRDYLTNKKYFIVLDD 93 (93)
Q Consensus 73 ~l~~~l~~~L~~kr~LlVlDD 93 (93)
.+...+.+.+..++.+|+|||
T Consensus 121 ~~~~~l~~~l~~~~~vlilDE 141 (384)
T 2qby_B 121 EYIDKIKNGTRNIRAIIYLDE 141 (384)
T ss_dssp HHHHHHHHHHSSSCEEEEEET
T ss_pred HHHHHHHHHhccCCCEEEEEC
Confidence 777888888877766999997
No 8
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.33 E-value=2.5e-11 Score=75.05 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=61.7
Q ss_pred eeeEEcCCCCcHHHHHHHHhcCcccccCC-CeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYNNNHVKFYF-DCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILRDYL 82 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~~L 82 (93)
.+.|+|++|+|||||++.+++ ...... ...+|++++...+...++..++..++....... .+...+.+.+.+.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~~~l~~~l 120 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWE--LYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRG---LSRDEFLALLVEHL 120 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSC---CCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH--HHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCC---CCHHHHHHHHHHHH
Confidence 789999999999999999988 444331 245677777777888999999988864322111 45666667776666
Q ss_pred C--CCeEEEEeeC
Q 037564 83 T--NKKYFIVLDD 93 (93)
Q Consensus 83 ~--~kr~LlVlDD 93 (93)
. +++.+|+|||
T Consensus 121 ~~~~~~~vlilDE 133 (389)
T 1fnn_A 121 RERDLYMFLVLDD 133 (389)
T ss_dssp HHTTCCEEEEEET
T ss_pred hhcCCeEEEEEEC
Confidence 3 5678999996
No 9
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.31 E-value=4.6e-12 Score=78.07 Aligned_cols=87 Identities=17% Similarity=0.073 Sum_probs=60.0
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCC---CeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHHHH
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYF---DCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSIL 78 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f---~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l 78 (93)
++.+.|+|++|+|||||++.+++ .....+ ...+|+++....+...++..++..++....... .+.......+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~~l 119 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTG---LSIAELYRRL 119 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSS---CCHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCHHHHHHHH
Confidence 35789999999999999999998 444332 245667766666777788888877754322111 4456666666
Q ss_pred HHhcC--CCeEEEEeeC
Q 037564 79 RDYLT--NKKYFIVLDD 93 (93)
Q Consensus 79 ~~~L~--~kr~LlVlDD 93 (93)
.+.+. +++.+|+|||
T Consensus 120 ~~~l~~~~~~~vlilDE 136 (386)
T 2qby_A 120 VKAVRDYGSQVVIVLDE 136 (386)
T ss_dssp HHHHHTCCSCEEEEEET
T ss_pred HHHHhccCCeEEEEEcC
Confidence 66663 4588999996
No 10
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.14 E-value=6.1e-10 Score=68.16 Aligned_cols=87 Identities=7% Similarity=0.015 Sum_probs=56.3
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccC-----C-C-eeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHH
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFY-----F-D-CHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLK 74 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~-----f-~-~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l 74 (93)
++.+.|+|++|+|||++++.+++ ++... . . ..+++++....+...++..|++++.+...... ...+.+
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~--~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~---~~~~~L 119 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMD--ELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGD---ISLEAL 119 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHH--HHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CC---CCHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH--HHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCch---HHHHHH
Confidence 45688999999999999999998 44321 1 1 24566767778889999999999965422111 334444
Q ss_pred HHHHHHh--cCCCeEEEEeeC
Q 037564 75 KSILRDY--LTNKKYFIVLDD 93 (93)
Q Consensus 75 ~~~l~~~--L~~kr~LlVlDD 93 (93)
...+... -.+++++++||+
T Consensus 120 ~~~f~~~~~~~~~~~ii~lDE 140 (318)
T 3te6_A 120 NFYITNVPKAKKRKTLILIQN 140 (318)
T ss_dssp HHHHHHSCGGGSCEEEEEEEC
T ss_pred HHHHHHhhhccCCceEEEEec
Confidence 4444432 145678999995
No 11
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.13 E-value=1e-10 Score=71.27 Aligned_cols=84 Identities=10% Similarity=0.099 Sum_probs=53.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCC------CHHHHHHHHHHhhCCC------------C-CC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISY------DFRMVLDDIIKSVMPP------------S-RV 63 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~------~~~~ll~~il~~l~~~------------~-~~ 63 (93)
+++.|+|++|+|||||++++++ +. . .+|+++.... +...++..+.+.+... . ..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~--~~----~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 104 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLN--ER----P-GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFL 104 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH--HS----S-EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGG
T ss_pred CeEEEECCCcCCHHHHHHHHHH--Hc----C-cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecce
Confidence 5789999999999999999987 32 2 5666654322 5566666666654320 0 00
Q ss_pred ccccC-CCHHHHHHHHHHhcCC-CeEEEEeeC
Q 037564 64 SVIIG-EDYQLKKSILRDYLTN-KKYFIVLDD 93 (93)
Q Consensus 64 ~~~~~-~~~~~l~~~l~~~L~~-kr~LlVlDD 93 (93)
..... .+..++.+.+.+.... ++++||+||
T Consensus 105 ~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe 136 (350)
T 2qen_A 105 TLEPRKLSLREVFRELNDLGEELGEFIVAFDE 136 (350)
T ss_dssp TSCGGGCCHHHHHHHHHHHHHHHSCEEEEEET
T ss_pred eeccccchHHHHHHHHHHHHhccCCEEEEEeC
Confidence 00011 4566677777666643 389999997
No 12
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.04 E-value=2.5e-09 Score=65.29 Aligned_cols=48 Identities=10% Similarity=0.102 Sum_probs=32.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCC-----CCHHHHHHHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSIS-----YDFRMVLDDIIK 55 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-----~~~~~ll~~il~ 55 (93)
+++.|+|++|+|||+|++.+.+ +... ..+|+.+... .+...++..+.+
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGIN--ELNL---PYIYLDLRKFEERNYISYKDFLLELQK 83 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH--HHTC---CEEEEEGGGGTTCSCCCHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH--hcCC---CEEEEEchhhccccCCCHHHHHHHHHH
Confidence 4789999999999999999988 3332 2467776532 344444444443
No 13
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.84 E-value=3.9e-08 Score=56.59 Aligned_cols=85 Identities=9% Similarity=0.015 Sum_probs=48.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCC-----cc-cc-C-CCHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRV-----SV-II-G-EDYQLK 74 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~-----~~-~~-~-~~~~~l 74 (93)
.++.|.|++|+|||||+..++. . .-..++|++.....+...+.+ +.+........ .. .. . ......
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQRRV 94 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHHHH
Confidence 5789999999999999999987 1 123567777666555554433 33332210000 00 00 0 222345
Q ss_pred HHHHHHhcCCCeEEEEeeC
Q 037564 75 KSILRDYLTNKKYFIVLDD 93 (93)
Q Consensus 75 ~~~l~~~L~~kr~LlVlDD 93 (93)
...++..+..+.-++|+|.
T Consensus 95 ~~~~~~l~~~~~~lliiD~ 113 (220)
T 2cvh_A 95 IGSLKKTVDSNFALVVVDS 113 (220)
T ss_dssp HHHHHHHCCTTEEEEEEEC
T ss_pred HHHHHHHhhcCCCEEEEcC
Confidence 5566666644566888984
No 14
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.80 E-value=1.5e-08 Score=57.91 Aligned_cols=36 Identities=19% Similarity=-0.066 Sum_probs=26.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEe
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRV 40 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~ 40 (93)
+.+.|+|++|+|||+||+.+++ ..........|+++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~--~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN--ELAKRNVSSLIVYV 90 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH--HHHTTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEh
Confidence 5788999999999999999998 44433334555543
No 15
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.76 E-value=3e-08 Score=56.64 Aligned_cols=21 Identities=14% Similarity=-0.083 Sum_probs=19.4
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+.|+|++|+|||++|+.+++
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999987
No 16
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.69 E-value=5.4e-08 Score=54.42 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=20.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.+.|+|++|+|||++|+.+++
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~ 65 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999987
No 17
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.65 E-value=5.8e-08 Score=54.58 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=20.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+.++|++|+|||||++.+++
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999988
No 18
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.64 E-value=3.6e-09 Score=61.18 Aligned_cols=22 Identities=9% Similarity=-0.047 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.+.|+|++|+||||||+.+++
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999987
No 19
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.63 E-value=3.5e-07 Score=56.68 Aligned_cols=85 Identities=13% Similarity=0.059 Sum_probs=51.6
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHH
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRD 80 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~ 80 (93)
.+++.|.|++|+||||||.++.. .....=..++|++.....+.. .++.++.......-.. .+.++....+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~--~~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVA--NAQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 36789999999999999999886 333223457788887766643 2344442211100011 456666666655
Q ss_pred hcCC-CeEEEEeeC
Q 037564 81 YLTN-KKYFIVLDD 93 (93)
Q Consensus 81 ~L~~-kr~LlVlDD 93 (93)
..+. +.-+||+|.
T Consensus 134 l~~~~~~~lIVIDs 147 (349)
T 2zr9_A 134 LVRSGALDIIVIDS 147 (349)
T ss_dssp HHTTTCCSEEEEEC
T ss_pred HHhcCCCCEEEEcC
Confidence 5543 445888884
No 20
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.63 E-value=2.3e-07 Score=57.65 Aligned_cols=85 Identities=14% Similarity=0.102 Sum_probs=52.3
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHH
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRD 80 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~ 80 (93)
.+++.|.|++|+|||||+.+++. .....-..++|++.....+.. .+++++.......-.. .+.++....+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~--~~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIA--EAQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 35889999999999999999987 333222346788776666644 3445543221111111 566666666666
Q ss_pred hcC-CCeEEEEeeC
Q 037564 81 YLT-NKKYFIVLDD 93 (93)
Q Consensus 81 ~L~-~kr~LlVlDD 93 (93)
.++ .+.-++|+|.
T Consensus 134 l~~~~~~dlvVIDS 147 (356)
T 3hr8_A 134 LVRSGVVDLIVVDS 147 (356)
T ss_dssp HHHTSCCSEEEEEC
T ss_pred HhhhcCCCeEEehH
Confidence 553 3445788884
No 21
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.61 E-value=1.1e-07 Score=60.46 Aligned_cols=27 Identities=19% Similarity=-0.022 Sum_probs=22.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFY 31 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~ 31 (93)
.-+.|+|++|+||||||+.+++ .+...
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~--~l~~~ 157 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGN--YVVQN 157 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHH--HHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHHh
Confidence 3578999999999999999998 54433
No 22
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.60 E-value=6.1e-08 Score=59.52 Aligned_cols=65 Identities=12% Similarity=0.098 Sum_probs=40.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEe--CCCCCHHHHHHHHHHhhCCCCCCccccCCCHHHHHHHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRV--SISYDFRMVLDDIIKSVMPPSRVSVIIGEDYQLKKSILRD 80 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 80 (93)
+++.|+|++|+|||+||.++.. . . -..+.|++. .+..+ . .. .+.+.....+.+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~--~-~--G~~VlyIs~~~eE~v~-------------~--~~-----~~le~~l~~i~~ 178 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGE--A-L--GGKDKYATVRFGEPLS-------------G--YN-----TDFNVFVDDIAR 178 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHH--H-H--HTTSCCEEEEBSCSST-------------T--CB-----CCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH--h-C--CCCEEEEEecchhhhh-------------h--hh-----cCHHHHHHHHHH
Confidence 4678999999999999999987 3 1 123456666 22211 0 00 244555555666
Q ss_pred hcCCCeEEEEeeC
Q 037564 81 YLTNKKYFIVLDD 93 (93)
Q Consensus 81 ~L~~kr~LlVlDD 93 (93)
.+...+ ++|+|+
T Consensus 179 ~l~~~~-LLVIDs 190 (331)
T 2vhj_A 179 AMLQHR-VIVIDS 190 (331)
T ss_dssp HHHHCS-EEEEEC
T ss_pred HHhhCC-EEEEec
Confidence 665555 888885
No 23
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.59 E-value=5.2e-07 Score=56.26 Aligned_cols=85 Identities=11% Similarity=0.051 Sum_probs=52.8
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHH
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRD 80 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~ 80 (93)
.+++.|.|.+|+||||||.++.. .....-..++|++.....+.. .++.++.......-.+ .+.+++...+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~--~~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVA--QAQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHH--HHHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 35788999999999999999887 333223467888887766643 1344442211100011 456677777766
Q ss_pred hcCC-CeEEEEeeC
Q 037564 81 YLTN-KKYFIVLDD 93 (93)
Q Consensus 81 ~L~~-kr~LlVlDD 93 (93)
..+. .--+||+|.
T Consensus 147 l~~~~~~~lVVIDs 160 (366)
T 1xp8_A 147 LVRSGAIDVVVVDS 160 (366)
T ss_dssp HHTTTCCSEEEEEC
T ss_pred HHhcCCCCEEEEeC
Confidence 6644 344888884
No 24
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.57 E-value=3.3e-07 Score=56.93 Aligned_cols=84 Identities=13% Similarity=0.016 Sum_probs=50.6
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCcc-ccC-CCHHHHHHHHH
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSV-IIG-EDYQLKKSILR 79 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~-~~~-~~~~~l~~~l~ 79 (93)
.+++.|.|.+|+||||||.+++. .....-..++|++.....+... ++.++... ... -.+ .+.+++.+.++
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~--~~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~-~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDI-DNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCCCCHHH-----HHHTTCCG-GGCEEECCSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEeCCCCccHHH-----HHHcCCCh-hheeeeCCCCHHHHHHHHH
Confidence 36889999999999999999887 3332334578888877666432 34444221 111 011 34555555555
Q ss_pred HhcC-CCeEEEEeeC
Q 037564 80 DYLT-NKKYFIVLDD 93 (93)
Q Consensus 80 ~~L~-~kr~LlVlDD 93 (93)
...+ .+.-+||+|.
T Consensus 135 ~l~~~~~~~lVVIDs 149 (356)
T 1u94_A 135 ALARSGAVDVIVVDS 149 (356)
T ss_dssp HHHHHTCCSEEEEEC
T ss_pred HHHhccCCCEEEEcC
Confidence 4432 3344888884
No 25
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.55 E-value=3.9e-07 Score=55.77 Aligned_cols=22 Identities=5% Similarity=-0.008 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+-+.++|++|+|||+||+.+++
T Consensus 46 ~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 4578999999999999999998
No 26
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.53 E-value=1.2e-07 Score=56.64 Aligned_cols=22 Identities=9% Similarity=-0.010 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+-+.|+|++|+|||+||+.+++
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4578999999999999999988
No 27
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.51 E-value=6.6e-08 Score=54.08 Aligned_cols=23 Identities=13% Similarity=-0.031 Sum_probs=21.1
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.+|.+.|++|+||||+|+.+..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999887
No 28
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.48 E-value=3.4e-07 Score=55.26 Aligned_cols=20 Identities=15% Similarity=-0.069 Sum_probs=19.0
Q ss_pred eeEEcCCCCcHHHHHHHHhc
Q 037564 5 KPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.++|++|+|||++|+.+++
T Consensus 45 ~ll~G~~G~GKt~la~~l~~ 64 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAH 64 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHH
Confidence 78999999999999999988
No 29
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.48 E-value=7.5e-07 Score=51.88 Aligned_cols=90 Identities=6% Similarity=-0.013 Sum_probs=49.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCccccc----CCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCC---Ccccc-C-CCHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKF----YFDCHAWVRVSISYDFRMVLDDIIKSVMPPSR---VSVII-G-EDYQL 73 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~---~~~~~-~-~~~~~ 73 (93)
.++.|.|++|+|||||+..++....... .-...+|+.....+....+. ++++.+..... ..... . .+.++
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTDH 103 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHHH
Confidence 5789999999999999999887211111 12456787766655554433 34444432110 00000 0 22232
Q ss_pred ---HHHHHHHhcC-CCeEEEEeeC
Q 037564 74 ---KKSILRDYLT-NKKYFIVLDD 93 (93)
Q Consensus 74 ---l~~~l~~~L~-~kr~LlVlDD 93 (93)
....+.+.+. .+.-++|+|+
T Consensus 104 ~~~~~~~~~~~~~~~~~~lliiD~ 127 (243)
T 1n0w_A 104 QTQLLYQASAMMVESRYALLIVDS 127 (243)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEET
T ss_pred HHHHHHHHHHHHhcCCceEEEEeC
Confidence 3334555553 4566888985
No 30
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.46 E-value=1.1e-06 Score=54.18 Aligned_cols=55 Identities=7% Similarity=-0.040 Sum_probs=37.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCccccc----CCCeeEEEEeCCCCCHHHHHHHHHHhhC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKF----YFDCHAWVRVSISYDFRMVLDDIIKSVM 58 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~ll~~il~~l~ 58 (93)
.++.|.|++|+|||+||.+++....... .-..++|++....++...+.. ++..++
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 5788999999999999999887322211 124577888877777665543 344443
No 31
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.45 E-value=8.2e-07 Score=54.07 Aligned_cols=22 Identities=23% Similarity=0.010 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.+.|+|++|+||||||+.+++
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4688999999999999999988
No 32
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.44 E-value=1.2e-07 Score=52.92 Aligned_cols=24 Identities=4% Similarity=0.058 Sum_probs=21.6
Q ss_pred CCceeeEEcCCCCcHHHHHHHHhc
Q 037564 1 FSGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 1 ~~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
|+.+|.|.|++|+||||+|+.+..
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHh
Confidence 456899999999999999999876
No 33
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.43 E-value=3.1e-07 Score=54.08 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+-+.++|++|+|||++|+.+++
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999988
No 34
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.42 E-value=1.1e-07 Score=54.21 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=21.2
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
||.|.|.|++|+|||||++.+..
T Consensus 1 ~RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 1 SRPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999999876
No 35
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.42 E-value=1.1e-06 Score=53.12 Aligned_cols=22 Identities=14% Similarity=0.031 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.+.++|++|+|||+||+.+++
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHH
Confidence 4588999999999999999998
No 36
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=98.41 E-value=7.7e-07 Score=54.30 Aligned_cols=90 Identities=8% Similarity=0.054 Sum_probs=52.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCccccc---------CC-----CeeEEEEeCCCCCHHHHHHHHHHhhCCCCC---Ccc
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKF---------YF-----DCHAWVRVSISYDFRMVLDDIIKSVMPPSR---VSV 65 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~---------~f-----~~~~wv~~~~~~~~~~ll~~il~~l~~~~~---~~~ 65 (93)
.++.|.|.+|+|||+||.+++....... .. ..++|++....++...+.+ +++.++.... ...
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l 177 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDNT 177 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHTE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcCE
Confidence 5789999999999999999886321211 11 3567888887777666554 3445543210 000
Q ss_pred -ccC-CCHH---HHHHHHHHhcCC--CeEEEEeeC
Q 037564 66 -IIG-EDYQ---LKKSILRDYLTN--KKYFIVLDD 93 (93)
Q Consensus 66 -~~~-~~~~---~l~~~l~~~L~~--kr~LlVlDD 93 (93)
-.+ .+.+ ++...+.+.+.. +.-+||+|.
T Consensus 178 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDs 212 (322)
T 2i1q_A 178 FVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDS 212 (322)
T ss_dssp EEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEEC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEEC
Confidence 001 2333 344556565543 445888984
No 37
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=98.41 E-value=1.9e-06 Score=52.93 Aligned_cols=83 Identities=8% Similarity=0.038 Sum_probs=50.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccC--CCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHH-HHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFY--FDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLK-KSIL 78 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l-~~~l 78 (93)
+++-|.|++|+|||||+-+++. ..... -..++|++.....+.. -+++++.....-.-.. .+.++. ...+
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~--~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~ 101 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVS--SYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMV 101 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH--HHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHH
Confidence 3678899999999999998877 33332 2457888877777653 2566664322111111 455555 4443
Q ss_pred HHh--c-CCCeEEEEee
Q 037564 79 RDY--L-TNKKYFIVLD 92 (93)
Q Consensus 79 ~~~--L-~~kr~LlVlD 92 (93)
... + .++.-|+|+|
T Consensus 102 ~~l~~i~~~~~~lvVID 118 (333)
T 3io5_A 102 NQLDAIERGEKVVVFID 118 (333)
T ss_dssp HHHHTCCTTCCEEEEEE
T ss_pred HHHHHhhccCceEEEEe
Confidence 332 3 3456788888
No 38
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.40 E-value=1.9e-06 Score=50.84 Aligned_cols=22 Identities=9% Similarity=0.009 Sum_probs=19.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+-+.++|++|+||||||+.+++
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3478999999999999999988
No 39
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.40 E-value=1.4e-06 Score=53.36 Aligned_cols=91 Identities=10% Similarity=0.071 Sum_probs=52.9
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccC----CCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCC---ccc-cC-CCHH
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFY----FDCHAWVRVSISYDFRMVLDDIIKSVMPPSRV---SVI-IG-EDYQ 72 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~---~~~-~~-~~~~ 72 (93)
..++.|.|++|+|||+||.+++........ -..++|++....++...+.+ +++.++..... ... .+ .+.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHH
Confidence 357899999999999999998863211111 23578888887777666543 34555422100 000 01 2333
Q ss_pred ---HHHHHHHHhcC--CCeEEEEeeC
Q 037564 73 ---LKKSILRDYLT--NKKYFIVLDD 93 (93)
Q Consensus 73 ---~l~~~l~~~L~--~kr~LlVlDD 93 (93)
++...+...+. .+.-+||+|.
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDs 211 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDS 211 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETT
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeC
Confidence 34555555553 4556888884
No 40
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.38 E-value=2.4e-07 Score=51.54 Aligned_cols=23 Identities=4% Similarity=-0.055 Sum_probs=20.9
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+|+|.|++|+||||+++.+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999877
No 41
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.35 E-value=8.8e-07 Score=52.72 Aligned_cols=22 Identities=18% Similarity=0.040 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+-+.++|++|+|||++|+.+++
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 3578999999999999999988
No 42
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.35 E-value=2.9e-07 Score=51.99 Aligned_cols=23 Identities=9% Similarity=-0.033 Sum_probs=20.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.+...
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 57899999999999999999873
No 43
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=98.35 E-value=2.2e-07 Score=54.39 Aligned_cols=83 Identities=12% Similarity=-0.033 Sum_probs=43.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHHh
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRDY 81 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~~ 81 (93)
.++.++|..|+||||++..+.+ +...+-..+..+....... ...+++++++.... ... .+..++.+.+.+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~--r~~~~g~kVli~~~~~d~r---~~~~i~srlG~~~~---~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLH--RLEYADVKYLVFKPKIDTR---SIRNIQSRTGTSLP---SVEVESAPEILNYIMSN 84 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH--HHHHTTCCEEEEEECCCGG---GCSSCCCCCCCSSC---CEEESSTHHHHHHHHST
T ss_pred EEEEEECCCCCcHHHHHHHHHH--HHHhcCCEEEEEEeccCch---HHHHHHHhcCCCcc---ccccCCHHHHHHHHHHH
Confidence 5788899999999999998877 4433322333333222111 11123333322111 111 3445555666655
Q ss_pred cCCCeE-EEEeeC
Q 037564 82 LTNKKY-FIVLDD 93 (93)
Q Consensus 82 L~~kr~-LlVlDD 93 (93)
+.+.++ +|++|.
T Consensus 85 ~~~~~~dvViIDE 97 (223)
T 2b8t_A 85 SFNDETKVIGIDE 97 (223)
T ss_dssp TSCTTCCEEEECS
T ss_pred hhCCCCCEEEEec
Confidence 544444 777773
No 44
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.35 E-value=2.8e-06 Score=49.00 Aligned_cols=47 Identities=11% Similarity=-0.056 Sum_probs=29.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDI 53 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~i 53 (93)
.++.|.|++|+|||||++.++. .....-..+.|+.... ....+...+
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~--~~~~~~~~v~~~~~~~--~~~~~~~~~ 70 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIA--KGLRDGDPCIYVTTEE--SRDSIIRQA 70 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH--HHHHHTCCEEEEESSS--CHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH--HHHHCCCeEEEEEccc--CHHHHHHHH
Confidence 5789999999999999999886 2222112345555433 444444443
No 45
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.35 E-value=6.9e-07 Score=53.66 Aligned_cols=22 Identities=9% Similarity=0.004 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+-+.++|++|+|||++|+.++.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4688999999999999999988
No 46
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.34 E-value=1.1e-06 Score=52.93 Aligned_cols=21 Identities=10% Similarity=0.018 Sum_probs=19.0
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-+.++|++|+|||++|+.+++
T Consensus 69 ~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998777
No 47
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.34 E-value=3e-07 Score=50.86 Aligned_cols=20 Identities=15% Similarity=0.013 Sum_probs=18.7
Q ss_pred ceeeEEcCCCCcHHHHHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADT 22 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~ 22 (93)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999998
No 48
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.34 E-value=4.4e-06 Score=50.69 Aligned_cols=23 Identities=22% Similarity=0.081 Sum_probs=20.7
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.++++++|++|+||||++..+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999886
No 49
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.33 E-value=2.9e-07 Score=51.77 Aligned_cols=24 Identities=4% Similarity=-0.020 Sum_probs=21.1
Q ss_pred CCceeeEEcCCCCcHHHHHHHHhc
Q 037564 1 FSGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 1 ~~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
|..+|.|.|++|+||||+|+.+..
T Consensus 1 M~~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 1 MAPKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp -CCSEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 50
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.33 E-value=3.5e-07 Score=51.76 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=20.8
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+++++|.|++|+|||||++.+..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999875
No 51
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.33 E-value=1.5e-05 Score=48.67 Aligned_cols=50 Identities=18% Similarity=0.116 Sum_probs=34.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHh
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKS 56 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~ 56 (93)
.++.|.|.+|+||||+|.+++.+ ....-..++|++.. .+..++...++..
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~--~a~~g~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKN--MSDNDDVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH--HHTTTCEEEEEESS--SCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEECC--CCHHHHHHHHHHH
Confidence 57889999999999999998863 22222567777765 4556666665543
No 52
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.32 E-value=6.3e-07 Score=54.70 Aligned_cols=22 Identities=5% Similarity=-0.017 Sum_probs=20.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+-+.++|++|+|||+||+.+++
T Consensus 52 ~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3578999999999999999988
No 53
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.32 E-value=4.3e-07 Score=51.17 Aligned_cols=23 Identities=4% Similarity=0.056 Sum_probs=20.9
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.++++|+|++|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999876
No 54
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.32 E-value=3.3e-07 Score=50.80 Aligned_cols=22 Identities=9% Similarity=-0.073 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 55
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.30 E-value=4.1e-07 Score=51.41 Aligned_cols=23 Identities=9% Similarity=-0.058 Sum_probs=20.8
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+++|.|++|+|||||++.+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 46889999999999999999975
No 56
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.29 E-value=4.4e-07 Score=51.79 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|.|.|++|+||||+|+.+..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998876
No 57
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.28 E-value=5.2e-07 Score=52.25 Aligned_cols=36 Identities=3% Similarity=-0.047 Sum_probs=25.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEe
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRV 40 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~ 40 (93)
+.+.|+|++|+||||||+.+++ ..........|+..
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~--~~~~~~~~~~~~~~ 88 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACA--RANELERRSFYIPL 88 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEEG
T ss_pred CeEEEECCCCCCHHHHHHHHHH--HHHHcCCeEEEEEH
Confidence 5688999999999999999987 43332233445554
No 58
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.28 E-value=1.3e-06 Score=54.12 Aligned_cols=21 Identities=5% Similarity=-0.024 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-+.++|++|+|||+||+.+++
T Consensus 86 ~iLL~GppGtGKT~la~ala~ 106 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVAT 106 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 478899999999999999998
No 59
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.27 E-value=1.6e-06 Score=56.10 Aligned_cols=22 Identities=9% Similarity=0.006 Sum_probs=20.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.+.++|++|+|||++|+.+++
T Consensus 78 ~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999988
No 60
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.27 E-value=6.2e-07 Score=51.07 Aligned_cols=22 Identities=18% Similarity=0.028 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999876
No 61
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.26 E-value=5.7e-07 Score=50.56 Aligned_cols=23 Identities=9% Similarity=-0.065 Sum_probs=20.6
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+.|.+.|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999876
No 62
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.26 E-value=5.5e-06 Score=50.53 Aligned_cols=22 Identities=9% Similarity=-0.076 Sum_probs=20.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|+|++|+||||++..++.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHH
Confidence 5899999999999999999887
No 63
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.26 E-value=5.4e-07 Score=51.44 Aligned_cols=22 Identities=9% Similarity=-0.186 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|.|.|++|+||||+++.+..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 64
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.25 E-value=2.6e-06 Score=52.76 Aligned_cols=22 Identities=9% Similarity=-0.067 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+-+.++|++|+|||+||+.+++
T Consensus 118 ~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999988
No 65
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.25 E-value=6.5e-07 Score=50.35 Aligned_cols=23 Identities=4% Similarity=-0.019 Sum_probs=20.8
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.+|.|.|++|+||||+++.+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999887
No 66
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.24 E-value=7e-07 Score=51.01 Aligned_cols=22 Identities=9% Similarity=-0.047 Sum_probs=20.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|++|+||||+++.+..
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999887
No 67
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.24 E-value=6.2e-07 Score=51.36 Aligned_cols=22 Identities=9% Similarity=0.024 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|.|.|++|+||||+++.+..
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999999876
No 68
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.23 E-value=1.9e-06 Score=54.80 Aligned_cols=22 Identities=5% Similarity=-0.008 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+-+.++|++|+|||+||+.+++
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999998
No 69
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.23 E-value=7.3e-07 Score=49.51 Aligned_cols=24 Identities=4% Similarity=-0.027 Sum_probs=21.3
Q ss_pred CCceeeEEcCCCCcHHHHHHHHhc
Q 037564 1 FSGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 1 ~~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
|..+|.|.|++|+||||+|+.+..
T Consensus 1 m~~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 1 MTEPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCCCEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 70
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.23 E-value=8.1e-07 Score=51.12 Aligned_cols=22 Identities=9% Similarity=0.039 Sum_probs=20.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||++.+..
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999999986
No 71
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.23 E-value=8.4e-07 Score=50.68 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|++|+|||||++.+..
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 72
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.23 E-value=7.4e-07 Score=50.25 Aligned_cols=23 Identities=9% Similarity=0.033 Sum_probs=20.6
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+|.+.|++|+||||+++.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999876
No 73
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.22 E-value=9.7e-07 Score=50.47 Aligned_cols=23 Identities=9% Similarity=-0.103 Sum_probs=20.5
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+|+|.|++|+||||+++.+..
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
No 74
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.22 E-value=7.1e-07 Score=51.29 Aligned_cols=22 Identities=5% Similarity=0.004 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||++.+..
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4889999999999999999877
No 75
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.21 E-value=1.4e-06 Score=55.36 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=20.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+=+.++|++|+|||+||+.+++
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3478899999999999999998
No 76
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.21 E-value=9.9e-07 Score=50.24 Aligned_cols=23 Identities=9% Similarity=0.030 Sum_probs=20.7
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+++|.|++|+||||+++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 77
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.21 E-value=7.9e-07 Score=53.73 Aligned_cols=22 Identities=9% Similarity=-0.098 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.+.++|++|+|||+||+.+++
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4678899999999999999998
No 78
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.20 E-value=7.9e-07 Score=50.04 Aligned_cols=22 Identities=9% Similarity=0.018 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999987
No 79
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.20 E-value=1e-06 Score=49.11 Aligned_cols=22 Identities=14% Similarity=0.135 Sum_probs=20.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|++|+||||+++.+..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4789999999999999998876
No 80
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.19 E-value=9.9e-06 Score=49.05 Aligned_cols=22 Identities=14% Similarity=-0.013 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|++|+||||||+.+..
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998877
No 81
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.19 E-value=7.3e-06 Score=51.69 Aligned_cols=55 Identities=4% Similarity=-0.048 Sum_probs=34.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCccccc----CCCeeEEEEeCCCCCHHHHHHHHHHhhC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKF----YFDCHAWVRVSISYDFRMVLDDIIKSVM 58 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~ll~~il~~l~ 58 (93)
.++.|.|++|+|||||+..++-...... .-...+|+.....+....+ ..+++.++
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 5789999999999999997653111111 1234678776665555443 33555554
No 82
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.19 E-value=9.7e-07 Score=49.38 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++++|++|+|||||++.++.
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHcc
Confidence 4789999999999999996543
No 83
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.19 E-value=1.6e-06 Score=54.70 Aligned_cols=22 Identities=9% Similarity=-0.000 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+=+.++|++|+|||.||+.+++
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHH
Confidence 4467899999999999999998
No 84
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.19 E-value=9.7e-07 Score=49.48 Aligned_cols=22 Identities=9% Similarity=0.051 Sum_probs=20.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..|.|.|++|+||||+++.+..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 85
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.19 E-value=1e-06 Score=50.42 Aligned_cols=22 Identities=9% Similarity=0.072 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.++|+|++|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999998875
No 86
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.18 E-value=1.7e-06 Score=55.07 Aligned_cols=22 Identities=9% Similarity=-0.016 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+=|.++|++|+|||+||+.+++
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4578899999999999999998
No 87
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.18 E-value=1.1e-06 Score=49.49 Aligned_cols=23 Identities=13% Similarity=0.058 Sum_probs=20.6
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+|+|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999876
No 88
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.18 E-value=1.3e-06 Score=55.51 Aligned_cols=22 Identities=9% Similarity=-0.011 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+=|.++|++|+|||.||+.+++
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHH
Confidence 4578899999999999999998
No 89
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.17 E-value=4.9e-06 Score=51.53 Aligned_cols=54 Identities=7% Similarity=0.068 Sum_probs=33.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCC----CeeEEEEeCCCCCHHHHHHHHHHhh
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYF----DCHAWVRVSISYDFRMVLDDIIKSV 57 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f----~~~~wv~~~~~~~~~~ll~~il~~l 57 (93)
.++.|.|++|+|||||+..++......... ..++|+.....+....+ ..+++..
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~ 189 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNR 189 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHc
Confidence 588999999999999999988732111111 23478776555443333 3344443
No 90
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.16 E-value=1.8e-06 Score=55.33 Aligned_cols=22 Identities=14% Similarity=-0.005 Sum_probs=20.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+=|.++|++|+|||.||+.+++
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHH
T ss_pred CceEeeCCCCCcHHHHHHHHHh
Confidence 4577899999999999999998
No 91
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.16 E-value=1.3e-06 Score=50.12 Aligned_cols=22 Identities=14% Similarity=-0.005 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|++|+|||||++.+..
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999877
No 92
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.16 E-value=1.1e-06 Score=49.08 Aligned_cols=22 Identities=5% Similarity=-0.074 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..|.|.|++|+||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999877
No 93
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.16 E-value=1.7e-05 Score=50.51 Aligned_cols=23 Identities=9% Similarity=-0.113 Sum_probs=20.6
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+++|.++|++|+||||++..++.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~ 119 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAY 119 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998886
No 94
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.16 E-value=1.3e-06 Score=50.46 Aligned_cols=22 Identities=14% Similarity=-0.014 Sum_probs=20.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|++|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 95
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.16 E-value=1.4e-06 Score=49.70 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=21.3
Q ss_pred CCceeeEEcCCCCcHHHHHHHHhc
Q 037564 1 FSGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 1 ~~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
|..+|+|.|++|+||||+++.+..
T Consensus 1 m~~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 1 MRGIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999876
No 96
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.16 E-value=5.8e-06 Score=51.66 Aligned_cols=22 Identities=9% Similarity=0.004 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+-+.|+|++|+|||+||+.+++
T Consensus 149 ~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999987
No 97
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.16 E-value=1.2e-06 Score=49.31 Aligned_cols=23 Identities=13% Similarity=-0.032 Sum_probs=20.6
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.+|+|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998876
No 98
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.15 E-value=1.1e-06 Score=52.06 Aligned_cols=22 Identities=14% Similarity=0.024 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|.|.|++|+||||||+.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4789999999999999999876
No 99
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.15 E-value=1.5e-06 Score=51.12 Aligned_cols=21 Identities=14% Similarity=-0.048 Sum_probs=19.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHh
Q 037564 3 GCKPILDSSSFDKTAFTADTY 23 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~ 23 (93)
.+|+|.|++|+|||||++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 100
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.15 E-value=1.2e-06 Score=49.70 Aligned_cols=21 Identities=14% Similarity=0.183 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.|+|.|++|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999887
No 101
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.15 E-value=4e-06 Score=56.89 Aligned_cols=22 Identities=14% Similarity=0.024 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+=|.++|++|+|||+||+.+++
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~ 260 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999
No 102
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.15 E-value=1.4e-06 Score=49.39 Aligned_cols=23 Identities=9% Similarity=-0.055 Sum_probs=20.7
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+|+|.|++|+||||+|+.+..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999877
No 103
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.15 E-value=4.3e-06 Score=45.49 Aligned_cols=22 Identities=0% Similarity=-0.219 Sum_probs=19.8
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.|+|++|+|||++|+.+++.
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999999873
No 104
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=98.15 E-value=2e-05 Score=50.13 Aligned_cols=50 Identities=12% Similarity=0.001 Sum_probs=34.3
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccC-CCeeEEEEeCCCCCHHHHHHHHHH
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFY-FDCHAWVRVSISYDFRMVLDDIIK 55 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~ll~~il~ 55 (93)
+.++.|.|.+|+||||+|..++.+ .... =..++|++.. -+..++...++.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~--~a~~~g~~vl~~slE--~~~~~l~~R~~~ 250 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQN--AALKEGVGVGIYSLE--MPAAQLTLRMMC 250 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHH--HHHTTCCCEEEEESS--SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH--HHHhCCCeEEEEECC--CCHHHHHHHHHH
Confidence 357889999999999999998873 3321 2346676654 345666666654
No 105
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.14 E-value=1.5e-06 Score=50.41 Aligned_cols=22 Identities=18% Similarity=0.025 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|+|++|+|||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999998876
No 106
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.14 E-value=1.3e-06 Score=49.81 Aligned_cols=23 Identities=4% Similarity=-0.175 Sum_probs=20.9
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35789999999999999999987
No 107
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.14 E-value=1.5e-06 Score=49.16 Aligned_cols=22 Identities=5% Similarity=-0.058 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|++|+||||+|+.+..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 108
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.14 E-value=1.7e-06 Score=49.69 Aligned_cols=22 Identities=9% Similarity=-0.004 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||++.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5889999999999999998764
No 109
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.14 E-value=1.7e-06 Score=48.91 Aligned_cols=21 Identities=14% Similarity=0.067 Sum_probs=19.1
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.++|+|++|+|||||++.++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998876
No 110
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.13 E-value=1.3e-05 Score=58.78 Aligned_cols=85 Identities=13% Similarity=0.006 Sum_probs=52.2
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHH
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRD 80 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~ 80 (93)
.+.+.|+|++|+|||+||.++.. +....=..+.|+......+... ++.++.....-.-.. .+.++..+.++.
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~--ea~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~ 1499 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1499 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHH
Confidence 36789999999999999999887 3333333567777777666554 344432211100001 445566666665
Q ss_pred hcC-CCeEEEEeeC
Q 037564 81 YLT-NKKYFIVLDD 93 (93)
Q Consensus 81 ~L~-~kr~LlVlDD 93 (93)
..+ .+..+||+|.
T Consensus 1500 lvr~~~~~lVVIDs 1513 (2050)
T 3cmu_A 1500 LARSGAVDVIVVDS 1513 (2050)
T ss_dssp HHHHTCCSEEEESC
T ss_pred HHhcCCCCEEEEcC
Confidence 543 4556888985
No 111
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.13 E-value=1.4e-06 Score=49.68 Aligned_cols=22 Identities=5% Similarity=-0.102 Sum_probs=19.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|++|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999998876
No 112
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.12 E-value=2.2e-05 Score=49.94 Aligned_cols=23 Identities=13% Similarity=-0.098 Sum_probs=20.5
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..++.++|++|+||||++..++.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35889999999999999998887
No 113
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.12 E-value=1.8e-06 Score=48.70 Aligned_cols=22 Identities=14% Similarity=-0.070 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..|.|.|++|+||||+++.+..
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998877
No 114
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.12 E-value=2e-06 Score=50.14 Aligned_cols=23 Identities=9% Similarity=0.014 Sum_probs=20.8
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+++|.|++|+|||||.+.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35889999999999999999876
No 115
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.12 E-value=1e-06 Score=55.46 Aligned_cols=39 Identities=8% Similarity=-0.029 Sum_probs=27.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCccccc---CCCeeEEEEeCCCC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKF---YFDCHAWVRVSISY 44 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~---~f~~~~wv~~~~~~ 44 (93)
..++|+|++|+|||||++.+.+ .+.. .+. ++++-+.+..
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar--~i~~~~~~v~-~I~~lIGER~ 216 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQ--SIAYNHPDCV-LMVLLIDERP 216 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHH--HHHHHCTTSE-EEEEEESSCH
T ss_pred cEEEEecCCCCChhHHHHHHHH--HHhhcCCCee-EEEEEecCCh
Confidence 4689999999999999998877 3322 222 4456666543
No 116
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.12 E-value=1.9e-06 Score=49.32 Aligned_cols=22 Identities=14% Similarity=-0.010 Sum_probs=20.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|++|+||||+++.+..
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999887
No 117
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.11 E-value=2.1e-06 Score=49.35 Aligned_cols=22 Identities=5% Similarity=0.117 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
++++|.|++|+|||||++.+..
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHh
Confidence 5889999999999999999886
No 118
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=98.11 E-value=4.9e-06 Score=53.46 Aligned_cols=51 Identities=10% Similarity=0.072 Sum_probs=34.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCccccc-CCCeeEEEEeCCCCC-HHHHHHHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKF-YFDCHAWVRVSISYD-FRMVLDDIIK 55 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~-~f~~~~wv~~~~~~~-~~~ll~~il~ 55 (93)
..++|+|.+|+|||||+..+..+ ... .-+.+++..+.+... ..++.+++.+
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~--~~~~~~~i~V~~~iGerttev~el~~~l~~ 204 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHN--IAQEHGGISVFAGVGERTREGNDLYHEMKD 204 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHH--HHHHTCCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhh--hhhccCcEEEEeeeccCchHHHHHHHHhhh
Confidence 46789999999999999998873 332 224456667766543 3455555543
No 119
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.11 E-value=2e-06 Score=49.22 Aligned_cols=23 Identities=4% Similarity=-0.190 Sum_probs=20.9
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.+|+|.|++|+||||+++.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 120
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.11 E-value=1.8e-06 Score=47.83 Aligned_cols=22 Identities=5% Similarity=-0.064 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|++|+||||+|+.+..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999877
No 121
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.11 E-value=2e-06 Score=49.02 Aligned_cols=22 Identities=9% Similarity=-0.074 Sum_probs=20.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|.|.|++|+||||+|+.+..
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 122
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=98.10 E-value=5.8e-06 Score=53.35 Aligned_cols=22 Identities=14% Similarity=0.024 Sum_probs=20.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+-+.|+|++|+|||++|+.+++
T Consensus 239 ~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEECcCCCCHHHHHHHHHH
Confidence 3578999999999999999987
No 123
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.10 E-value=1.2e-06 Score=48.08 Aligned_cols=22 Identities=5% Similarity=-0.099 Sum_probs=20.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+.|+|++|+|||||++.++.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999988
No 124
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.10 E-value=2.4e-05 Score=49.96 Aligned_cols=23 Identities=13% Similarity=-0.025 Sum_probs=20.5
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.+|.++|.+|+||||++..++.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHH
Confidence 46899999999999999988876
No 125
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.10 E-value=6.4e-06 Score=46.50 Aligned_cols=21 Identities=5% Similarity=-0.203 Sum_probs=19.6
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.|+|.|+.|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999887
No 126
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.09 E-value=2.2e-05 Score=48.58 Aligned_cols=50 Identities=10% Similarity=-0.096 Sum_probs=33.9
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHH
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIK 55 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~ 55 (93)
+.++.|.|.+|+||||+|..++.+ ....=..+.|++.. -+..++...++.
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~--~a~~g~~Vl~fSlE--ms~~ql~~Rlls 95 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLS--ALNDDRGVAVFSLE--MSAEQLALRALS 95 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHH--HHHTTCEEEEEESS--SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH--HHHcCCeEEEEeCC--CCHHHHHHHHHH
Confidence 357889999999999999998873 32222345666653 455666666544
No 127
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.09 E-value=2.1e-06 Score=50.53 Aligned_cols=22 Identities=5% Similarity=-0.050 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|+.|+|||||++.+..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998876
No 128
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.09 E-value=1.9e-06 Score=48.37 Aligned_cols=22 Identities=9% Similarity=-0.028 Sum_probs=20.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..|++.|++|+||||+++.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 129
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.09 E-value=2.1e-06 Score=52.49 Aligned_cols=22 Identities=9% Similarity=-0.127 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||++.+..
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHHHHh
Confidence 4899999999999999999877
No 130
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.09 E-value=2e-06 Score=48.46 Aligned_cols=22 Identities=9% Similarity=-0.099 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|.+.|++|+||||+++.+..
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999999877
No 131
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.09 E-value=2e-06 Score=51.79 Aligned_cols=24 Identities=4% Similarity=0.058 Sum_probs=21.5
Q ss_pred CCceeeEEcCCCCcHHHHHHHHhc
Q 037564 1 FSGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 1 ~~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
|+.+|.|.|++|+||||+|+.+..
T Consensus 1 M~~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 1 MKKIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
No 132
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.09 E-value=5.4e-06 Score=53.36 Aligned_cols=21 Identities=10% Similarity=0.031 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-+.++|++|+|||+||+.++.
T Consensus 51 gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 477999999999999999988
No 133
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.08 E-value=2.1e-06 Score=49.11 Aligned_cols=23 Identities=4% Similarity=-0.065 Sum_probs=20.9
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.+|+|.|++|+||||+++.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999987
No 134
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.08 E-value=4.1e-06 Score=54.58 Aligned_cols=22 Identities=9% Similarity=0.043 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+.++|++|+||||||+.++.
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999987
No 135
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.08 E-value=3.5e-05 Score=46.78 Aligned_cols=22 Identities=9% Similarity=-0.081 Sum_probs=20.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.++++.|.+|+||||++..++.
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999998886
No 136
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.08 E-value=2e-06 Score=52.83 Aligned_cols=22 Identities=9% Similarity=0.036 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+.++|++|+||||||+.++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~ 73 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIAS 73 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4688999999999999999987
No 137
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.08 E-value=1.5e-06 Score=48.39 Aligned_cols=22 Identities=18% Similarity=0.104 Sum_probs=19.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.+.|+|++|+|||++|+.+++
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999987
No 138
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.07 E-value=3.4e-06 Score=53.61 Aligned_cols=22 Identities=14% Similarity=0.052 Sum_probs=20.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+=|.++|++|+|||.||+.+++
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHH
Confidence 4478899999999999999998
No 139
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.07 E-value=4.6e-06 Score=50.50 Aligned_cols=22 Identities=9% Similarity=0.083 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+.|+|++|+|||++|+.+++
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999987
No 140
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.07 E-value=1.4e-06 Score=48.72 Aligned_cols=22 Identities=14% Similarity=-0.158 Sum_probs=16.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|.|.|++|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 141
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=98.07 E-value=4e-05 Score=49.42 Aligned_cols=49 Identities=8% Similarity=-0.042 Sum_probs=33.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccC-CCeeEEEEeCCCCCHHHHHHHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFY-FDCHAWVRVSISYDFRMVLDDIIK 55 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~-f~~~~wv~~~~~~~~~~ll~~il~ 55 (93)
.++.|.|.+|+||||||.+++. ..... =..++|++... +..++...++.
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~--~~a~~~g~~vl~~s~E~--s~~~l~~r~~~ 292 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQAL--QWGTAMGKKVGLAMLEE--SVEETAEDLIG 292 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHH--HHTTTSCCCEEEEESSS--CHHHHHHHHHH
T ss_pred eEEEEeecCCCCchHHHHHHHH--HHHHhcCCcEEEEeccC--CHHHHHHHHHH
Confidence 5788999999999999999887 33322 23566776544 45566666544
No 142
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.07 E-value=1.7e-05 Score=45.68 Aligned_cols=22 Identities=9% Similarity=0.016 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||++.++.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999875
No 143
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=98.06 E-value=2.5e-06 Score=48.47 Aligned_cols=23 Identities=9% Similarity=-0.078 Sum_probs=21.0
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+..|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 144
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=98.06 E-value=7.6e-06 Score=46.88 Aligned_cols=86 Identities=9% Similarity=-0.012 Sum_probs=45.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRDYL 82 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~~L 82 (93)
.|++-|.-|+||||.++.+.+ .+...-....+..-+......+.++.++..-........-.- .+..+....+...|
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L 79 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYL 79 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999999988 554433333443333333445555555543221100000000 23334455666666
Q ss_pred CCCeEEEEee
Q 037564 83 TNKKYFIVLD 92 (93)
Q Consensus 83 ~~kr~LlVlD 92 (93)
...+ .+|.|
T Consensus 80 ~~g~-~Vi~D 88 (197)
T 3hjn_A 80 SEGY-AVLLD 88 (197)
T ss_dssp TTTC-EEEEE
T ss_pred HCCC-eEEec
Confidence 5554 45555
No 145
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.06 E-value=2.9e-06 Score=49.51 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=19.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||++.++.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 5789999999999999998873
No 146
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.06 E-value=2.5e-06 Score=48.58 Aligned_cols=22 Identities=9% Similarity=-0.009 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|++|+||||+++.+..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 147
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.06 E-value=2.1e-06 Score=51.83 Aligned_cols=22 Identities=9% Similarity=0.084 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|.+.|++|+||||+|+.+..
T Consensus 34 ~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999999976
No 148
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.06 E-value=2.5e-06 Score=48.05 Aligned_cols=21 Identities=14% Similarity=0.053 Sum_probs=19.6
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+|+|.|++|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999887
No 149
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.05 E-value=2.7e-06 Score=50.34 Aligned_cols=21 Identities=10% Similarity=-0.054 Sum_probs=19.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHh
Q 037564 3 GCKPILDSSSFDKTAFTADTY 23 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~ 23 (93)
.+|+|.|++|+||||+++.+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999987
No 150
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.05 E-value=2.4e-06 Score=50.75 Aligned_cols=22 Identities=9% Similarity=0.058 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|.+.|++|+||||+|+.+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 151
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.05 E-value=2.6e-06 Score=48.38 Aligned_cols=22 Identities=14% Similarity=-0.111 Sum_probs=20.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|+.|+||||+++.+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999887
No 152
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.05 E-value=2.7e-06 Score=47.02 Aligned_cols=21 Identities=5% Similarity=-0.156 Sum_probs=19.4
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999877
No 153
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.04 E-value=3.1e-06 Score=48.40 Aligned_cols=22 Identities=18% Similarity=-0.055 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|++|+||||+++.+..
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998876
No 154
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.04 E-value=1.7e-06 Score=50.35 Aligned_cols=21 Identities=14% Similarity=0.020 Sum_probs=15.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHh
Q 037564 3 GCKPILDSSSFDKTAFTADTY 23 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~ 23 (93)
.+++|.|++|+|||||++.+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999998
No 155
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.03 E-value=2.8e-05 Score=47.83 Aligned_cols=22 Identities=18% Similarity=-0.044 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++++|++|+||||+++.+..
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999887
No 156
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.03 E-value=1.3e-05 Score=51.91 Aligned_cols=20 Identities=10% Similarity=0.117 Sum_probs=19.1
Q ss_pred eeEEcCCCCcHHHHHHHHhc
Q 037564 5 KPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.|+|++|+|||+||+.++.
T Consensus 67 vLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999988
No 157
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.01 E-value=1.8e-05 Score=48.03 Aligned_cols=22 Identities=14% Similarity=-0.077 Sum_probs=19.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.++.+.|++|+|||++|+.+++
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHHHHHH
Confidence 4667788899999999999988
No 158
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.01 E-value=4.2e-06 Score=46.48 Aligned_cols=22 Identities=14% Similarity=-0.047 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.++++.|+.|+|||||.+.+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998876
No 159
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.01 E-value=1.2e-06 Score=50.12 Aligned_cols=22 Identities=9% Similarity=-0.065 Sum_probs=19.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|++|+||||+++.+..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999876
No 160
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.01 E-value=3e-06 Score=49.94 Aligned_cols=20 Identities=10% Similarity=0.117 Sum_probs=19.0
Q ss_pred eeEEcCCCCcHHHHHHHHhc
Q 037564 5 KPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.|+|++|+|||||++.++.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999987
No 161
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.01 E-value=3.5e-06 Score=48.91 Aligned_cols=22 Identities=9% Similarity=0.009 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..|.|.|++|+||||+|+.+..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999876
No 162
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.01 E-value=4e-06 Score=49.30 Aligned_cols=22 Identities=14% Similarity=-0.006 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999876
No 163
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.01 E-value=3.6e-06 Score=47.11 Aligned_cols=23 Identities=13% Similarity=-0.071 Sum_probs=20.5
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+|++.|++|+||||+++.+..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999876
No 164
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.01 E-value=4.1e-06 Score=51.02 Aligned_cols=22 Identities=14% Similarity=0.031 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|+|++|+||||+++.+..
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 5899999999999999999875
No 165
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=98.01 E-value=8.1e-05 Score=48.16 Aligned_cols=52 Identities=12% Similarity=0.071 Sum_probs=38.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccc-cCCCeeEEEEeCCCC-CHHHHHHHHHHh
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVK-FYFDCHAWVRVSISY-DFRMVLDDIIKS 56 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~-~~f~~~~wv~~~~~~-~~~~ll~~il~~ 56 (93)
.-++|.|.+|+|||+|+..+.+ .+. .+-+.++|+-+.+.. ...++.+++.+.
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~--~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELIN--NIAKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHH--HTTTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred CeEEeecCCCCCchHHHHHHHH--HHHhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 4578999999999999998877 332 234677888887654 556777777764
No 166
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.01 E-value=3.1e-06 Score=50.77 Aligned_cols=20 Identities=15% Similarity=0.106 Sum_probs=19.1
Q ss_pred eeEEcCCCCcHHHHHHHHhc
Q 037564 5 KPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.++|++|+|||||++.++.
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999999987
No 167
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.00 E-value=3.4e-06 Score=49.79 Aligned_cols=22 Identities=9% Similarity=-0.023 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|++|+||||+|+.+..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998877
No 168
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.00 E-value=4e-06 Score=48.91 Aligned_cols=22 Identities=14% Similarity=-0.047 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999876
No 169
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.00 E-value=3.6e-06 Score=49.03 Aligned_cols=23 Identities=9% Similarity=-0.023 Sum_probs=21.1
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+++|.|.|++|+||+|.|+.+..
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999887
No 170
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.00 E-value=2.4e-05 Score=49.93 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=32.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCccccc-CCCeeEEEEeCCCCCHHHHHHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKF-YFDCHAWVRVSISYDFRMVLDDII 54 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~-~f~~~~wv~~~~~~~~~~ll~~il 54 (93)
.++.|.|.+|+|||||+..++. .... .-..+.|++... +..++...++
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~--~~~~~~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQ--NVATKTNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH--HHHHHSSCCEEEEESSS--CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHhCCCcEEEEECCC--CHHHHHHHHH
Confidence 5789999999999999999887 3332 122466766543 3455555543
No 171
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.00 E-value=3.9e-06 Score=48.46 Aligned_cols=22 Identities=5% Similarity=-0.059 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..|.+.|++|+||||+|+.+..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999877
No 172
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.00 E-value=3.6e-06 Score=48.37 Aligned_cols=21 Identities=5% Similarity=-0.034 Sum_probs=19.0
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999866
No 173
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.00 E-value=3.9e-06 Score=48.27 Aligned_cols=23 Identities=9% Similarity=-0.049 Sum_probs=20.6
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.+|.|.|++|+||||+++.+..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999876
No 174
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.00 E-value=2.3e-05 Score=56.87 Aligned_cols=84 Identities=13% Similarity=0.004 Sum_probs=52.9
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHH
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRD 80 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~ 80 (93)
.+++.|.|++|+||||||.+++. .....-..++|++.....+... ++.++.....-.-.+ .+.+++...++.
T Consensus 383 G~lilI~G~pGsGKTtLaLq~a~--~~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~ 455 (1706)
T 3cmw_A 383 GRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 455 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH--HHHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHH
Confidence 46889999999999999999887 3333334678888777766531 455543221111112 456666666665
Q ss_pred hcC-CCeEEEEee
Q 037564 81 YLT-NKKYFIVLD 92 (93)
Q Consensus 81 ~L~-~kr~LlVlD 92 (93)
..+ .+.-++|+|
T Consensus 456 lv~~~~~~lVVID 468 (1706)
T 3cmw_A 456 LARSGAVDVIVVD 468 (1706)
T ss_dssp HHHHTCCSEEEES
T ss_pred HHHhcCCCEEEEC
Confidence 443 344588888
No 175
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.99 E-value=1.8e-05 Score=47.57 Aligned_cols=22 Identities=14% Similarity=0.140 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||++.++.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 5789999999999999999887
No 176
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.99 E-value=3.9e-06 Score=47.95 Aligned_cols=22 Identities=9% Similarity=-0.106 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|+.|+||||+++.+..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998876
No 177
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.99 E-value=4.2e-06 Score=49.69 Aligned_cols=23 Identities=9% Similarity=-0.096 Sum_probs=20.8
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
...|+|.|++|+||||+++.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999876
No 178
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=97.99 E-value=4.3e-06 Score=51.16 Aligned_cols=23 Identities=4% Similarity=0.098 Sum_probs=20.5
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
++||+|.|-||+||||.+..+..
T Consensus 48 aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 48 AKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCccCHHHHHHHHHH
Confidence 68999999999999998887765
No 179
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.99 E-value=4.7e-06 Score=47.54 Aligned_cols=22 Identities=9% Similarity=0.036 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|+|++|+|||||++.++.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHh
Confidence 4789999999999999998876
No 180
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.98 E-value=3.4e-05 Score=56.71 Aligned_cols=84 Identities=13% Similarity=0.004 Sum_probs=52.8
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHH
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRD 80 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~ 80 (93)
.+++.|.|++|+||||||.+++. .....-..++|++.....+... ++.++.....-.-.+ .+.+++...++.
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~--~~a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~ 455 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 455 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH--HHHhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHH
Confidence 36889999999999999999987 3333334577887777666432 445543221111111 566677766665
Q ss_pred hcC-CCeEEEEee
Q 037564 81 YLT-NKKYFIVLD 92 (93)
Q Consensus 81 ~L~-~kr~LlVlD 92 (93)
..+ .+.-++|+|
T Consensus 456 lv~~~~~~lIVID 468 (2050)
T 3cmu_A 456 LARSGAVDVIVVD 468 (2050)
T ss_dssp HHHHTCCSEEEES
T ss_pred HHHhcCCcEEEEC
Confidence 442 344588888
No 181
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.98 E-value=4.3e-06 Score=48.36 Aligned_cols=22 Identities=9% Similarity=-0.239 Sum_probs=20.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..|.|.|++|+||||+++.+..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 182
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.97 E-value=4.3e-06 Score=48.08 Aligned_cols=21 Identities=5% Similarity=-0.086 Sum_probs=19.0
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 183
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.97 E-value=4.6e-05 Score=46.17 Aligned_cols=23 Identities=13% Similarity=-0.098 Sum_probs=20.7
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+++++|.+|+||||++..++.
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~ 120 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35889999999999999999887
No 184
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.97 E-value=5.2e-06 Score=48.85 Aligned_cols=23 Identities=4% Similarity=0.120 Sum_probs=20.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|+|++|+|||||.+.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999873
No 185
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.97 E-value=4.6e-06 Score=48.07 Aligned_cols=22 Identities=5% Similarity=-0.079 Sum_probs=19.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|+.|+||||+++.+..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998865
No 186
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.97 E-value=5.2e-06 Score=49.55 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.+..
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999876
No 187
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.96 E-value=4.8e-06 Score=50.67 Aligned_cols=22 Identities=14% Similarity=-0.065 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|++|+|||||++.+..
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998877
No 188
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.96 E-value=2.5e-06 Score=47.99 Aligned_cols=23 Identities=22% Similarity=0.128 Sum_probs=20.4
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+++|+|.+|+|||||++.+..
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999887
No 189
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.96 E-value=4.9e-06 Score=51.44 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|++|+||||||..+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4899999999999999999887
No 190
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.96 E-value=5e-06 Score=51.04 Aligned_cols=21 Identities=14% Similarity=-0.029 Sum_probs=19.6
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+|+|.|++|+||||+++.+..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999998866
No 191
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.95 E-value=5.4e-06 Score=48.91 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999876
No 192
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.95 E-value=5.5e-06 Score=46.56 Aligned_cols=22 Identities=9% Similarity=0.007 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.++.|.|.+|+|||||+..+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999887
No 193
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.95 E-value=5.3e-06 Score=50.97 Aligned_cols=23 Identities=9% Similarity=0.083 Sum_probs=20.8
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+|.|+|++|+||||||+.+..
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999887
No 194
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.94 E-value=1.3e-05 Score=54.44 Aligned_cols=22 Identities=14% Similarity=0.024 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.-+.++|++|+||||||+.+..
T Consensus 239 ~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CEEEECSCTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4588999999999999999988
No 195
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.94 E-value=6.1e-06 Score=49.09 Aligned_cols=22 Identities=9% Similarity=0.081 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.+..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999876
No 196
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.94 E-value=7e-05 Score=47.73 Aligned_cols=23 Identities=9% Similarity=-0.075 Sum_probs=20.6
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+++|.++|.+|+||||++..++.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~ 122 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGK 122 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999886
No 197
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.94 E-value=6.1e-06 Score=49.39 Aligned_cols=22 Identities=9% Similarity=0.031 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||++.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999876
No 198
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.94 E-value=5.9e-06 Score=50.30 Aligned_cols=22 Identities=14% Similarity=-0.028 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++++|++|+||||+++.++.
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999998876
No 199
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.94 E-value=5.9e-06 Score=47.99 Aligned_cols=22 Identities=9% Similarity=0.069 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999877
No 200
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.94 E-value=6.1e-06 Score=49.64 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 4789999999999999999876
No 201
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.94 E-value=4.7e-06 Score=49.78 Aligned_cols=20 Identities=10% Similarity=0.117 Sum_probs=19.0
Q ss_pred eeEEcCCCCcHHHHHHHHhc
Q 037564 5 KPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.|+|++|+|||||++.++.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAG 95 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHH
Confidence 78999999999999999987
No 202
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.94 E-value=6.3e-06 Score=48.55 Aligned_cols=22 Identities=9% Similarity=0.054 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999876
No 203
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.93 E-value=2.6e-06 Score=46.30 Aligned_cols=22 Identities=5% Similarity=-0.210 Sum_probs=19.6
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.|+|++|+|||++|+.+++.
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCT
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 4779999999999999999873
No 204
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.93 E-value=5.6e-06 Score=48.74 Aligned_cols=22 Identities=14% Similarity=0.063 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..|.|.|++|+||||+|+.+..
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999876
No 205
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.93 E-value=3.2e-06 Score=50.00 Aligned_cols=22 Identities=14% Similarity=-0.111 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|.+.|++|+||||+|+.+..
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999876
No 206
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.93 E-value=1e-05 Score=47.12 Aligned_cols=46 Identities=11% Similarity=-0.047 Sum_probs=30.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDD 52 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~ 52 (93)
.++.|.|++|+||||||.+++. .....-..++|++... +..++.+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~--~~~~~~~~v~~~~~e~--~~~~~~~~ 69 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLW--NGLKMGEPGIYVALEE--HPVQVRQN 69 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH--HHHHTTCCEEEEESSS--CHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH--HHHhcCCeEEEEEccC--CHHHHHHH
Confidence 5789999999999999988876 2222223456666443 34444443
No 207
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.93 E-value=6.6e-06 Score=49.19 Aligned_cols=22 Identities=14% Similarity=0.055 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.+..
T Consensus 51 ei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEcCCCCcHHHHHHHHHc
Confidence 4789999999999999999876
No 208
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.93 E-value=5.1e-06 Score=48.03 Aligned_cols=22 Identities=14% Similarity=-0.120 Sum_probs=20.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||++.+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~G 44 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAV 44 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999875
No 209
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.93 E-value=6.8e-06 Score=48.09 Aligned_cols=22 Identities=14% Similarity=0.048 Sum_probs=20.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.++.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999987
No 210
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.93 E-value=7.2e-06 Score=48.57 Aligned_cols=22 Identities=5% Similarity=0.066 Sum_probs=20.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999887
No 211
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.92 E-value=7.8e-06 Score=46.09 Aligned_cols=22 Identities=14% Similarity=-0.058 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.++.|.|++|+|||||++.+..
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 5789999999999999999887
No 212
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.92 E-value=7.2e-06 Score=48.53 Aligned_cols=22 Identities=18% Similarity=0.070 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.++.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999876
No 213
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.91 E-value=8.4e-06 Score=49.66 Aligned_cols=22 Identities=9% Similarity=-0.014 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.-+.++|++|+|||+||..+++
T Consensus 153 ~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5678999999999999999988
No 214
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.91 E-value=1.1e-05 Score=47.72 Aligned_cols=23 Identities=9% Similarity=-0.093 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.-+.|+|++|+|||++|+.+++.
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 35789999999999999999883
No 215
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.91 E-value=6.9e-06 Score=49.40 Aligned_cols=22 Identities=14% Similarity=-0.022 Sum_probs=19.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|++|+||||+|+.+..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998863
No 216
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.91 E-value=3e-05 Score=47.57 Aligned_cols=23 Identities=17% Similarity=0.010 Sum_probs=20.5
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+|+++|.+|+||||++..++.
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998876
No 217
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.91 E-value=9.5e-05 Score=47.21 Aligned_cols=49 Identities=18% Similarity=0.137 Sum_probs=31.7
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHH
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDII 54 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il 54 (93)
+.++.|.|.+|+||||+|.+++.+ ....=..+.|++... +..++...++
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~--~a~~g~~vl~fSlEm--s~~ql~~R~~ 245 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKN--MSDNDDVVNLHSLEM--GKKENIKRLI 245 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHH--HHHTTCEEEEECSSS--CTTHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHH--HHHcCCEEEEEECCC--CHHHHHHHHH
Confidence 357889999999999999998873 322223466665543 3334444444
No 218
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.91 E-value=7.7e-06 Score=48.75 Aligned_cols=22 Identities=9% Similarity=0.137 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.+..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999876
No 219
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.90 E-value=8.2e-06 Score=48.80 Aligned_cols=22 Identities=14% Similarity=0.216 Sum_probs=20.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.++.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999887
No 220
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.90 E-value=7.4e-06 Score=48.32 Aligned_cols=22 Identities=9% Similarity=-0.106 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999876
No 221
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.90 E-value=7.5e-06 Score=49.32 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+.++|++|+|||++|+.++.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~ 69 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAA 69 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3688999999999999999988
No 222
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.90 E-value=8e-06 Score=48.62 Aligned_cols=22 Identities=9% Similarity=-0.076 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.++.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999876
No 223
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.90 E-value=8.2e-06 Score=48.93 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.++.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999876
No 224
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.89 E-value=1.6e-05 Score=46.51 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=20.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..|+|.|++|+||||+++.+..
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4789999999999999999988
No 225
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=97.89 E-value=1.1e-05 Score=46.48 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=24.6
Q ss_pred CCceeeEEcCCCCcHHHHHHHHhcCcccccCCC
Q 037564 1 FSGCKPILDSSSFDKTAFTADTYNNNHVKFYFD 33 (93)
Q Consensus 1 ~~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~ 33 (93)
|+..|++-|.-|+||||+++.+.+ .+...++
T Consensus 1 M~kFI~~EG~dGsGKsTq~~~L~~--~L~~~~~ 31 (205)
T 4hlc_A 1 MSAFITFEGPEGSGKTTVINEVYH--RLVKDYD 31 (205)
T ss_dssp -CEEEEEECCTTSCHHHHHHHHHH--HHTTTSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHHH--HHHCCCC
Confidence 577899999999999999999888 4444443
No 226
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.88 E-value=8.8e-06 Score=48.63 Aligned_cols=22 Identities=9% Similarity=0.132 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.++.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4789999999999999999876
No 227
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=97.88 E-value=0.0002 Score=46.19 Aligned_cols=52 Identities=17% Similarity=0.175 Sum_probs=37.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCccc-ccCCCeeEEEEeCCCC-CHHHHHHHHHHh
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHV-KFYFDCHAWVRVSISY-DFRMVLDDIIKS 56 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~-~~~f~~~~wv~~~~~~-~~~~ll~~il~~ 56 (93)
.-++|.|.+|+|||+|+..+.+ .+ +.+-+.++++-+.+.. ...++++++.+.
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~--~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELIN--NVAKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH--HTTTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHH--hhHhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 4578999999999999998877 32 2233567777777654 456677777664
No 228
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.88 E-value=4.7e-06 Score=49.36 Aligned_cols=21 Identities=10% Similarity=0.041 Sum_probs=19.2
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-+.++|++|+|||+||+.+++
T Consensus 46 ~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 467899999999999999988
No 229
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.88 E-value=3.4e-05 Score=52.63 Aligned_cols=21 Identities=14% Similarity=0.147 Sum_probs=19.3
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-+.++|++|+|||++|+.+++
T Consensus 193 ~vlL~G~pG~GKT~la~~la~ 213 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQ 213 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999987
No 230
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.88 E-value=9e-06 Score=48.23 Aligned_cols=22 Identities=9% Similarity=0.075 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4789999999999999999876
No 231
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.88 E-value=7.8e-06 Score=50.36 Aligned_cols=22 Identities=18% Similarity=0.068 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.+.++|++|+|||++|+.+.+
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999988
No 232
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.88 E-value=7.1e-06 Score=47.23 Aligned_cols=21 Identities=10% Similarity=-0.086 Sum_probs=19.1
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 233
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.88 E-value=3e-05 Score=44.95 Aligned_cols=22 Identities=5% Similarity=-0.173 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..|.+.|+.|+||||+++.+..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 234
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.88 E-value=7.8e-06 Score=47.46 Aligned_cols=21 Identities=10% Similarity=-0.097 Sum_probs=19.2
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.|.+.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 235
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.88 E-value=9e-06 Score=48.97 Aligned_cols=22 Identities=9% Similarity=-0.133 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.++.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4789999999999999999876
No 236
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.88 E-value=7.4e-06 Score=50.00 Aligned_cols=22 Identities=9% Similarity=-0.023 Sum_probs=20.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.+.|+|++|+|||++|+.+++
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 3578999999999999999987
No 237
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.87 E-value=9.6e-06 Score=48.38 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|+|++|+|||||.+.+..
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 5789999999999999998776
No 238
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.87 E-value=9.6e-06 Score=48.18 Aligned_cols=22 Identities=9% Similarity=0.093 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999887
No 239
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.86 E-value=8.5e-06 Score=47.06 Aligned_cols=22 Identities=5% Similarity=-0.145 Sum_probs=19.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..|.+.|++|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999876
No 240
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.86 E-value=9.7e-06 Score=50.48 Aligned_cols=22 Identities=14% Similarity=-0.028 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++++|++|+||||+++.++.
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 5899999999999999998876
No 241
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.86 E-value=7.3e-06 Score=47.79 Aligned_cols=22 Identities=14% Similarity=-0.080 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|+.|+||||+++.+..
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGG
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999998877
No 242
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.86 E-value=9.8e-06 Score=51.22 Aligned_cols=22 Identities=9% Similarity=0.067 Sum_probs=20.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|.++|++|+||||+|+.+..
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999877
No 243
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.85 E-value=1.1e-05 Score=47.56 Aligned_cols=22 Identities=5% Similarity=-0.044 Sum_probs=20.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|++|+||||+++.+..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999876
No 244
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.85 E-value=1.1e-05 Score=49.21 Aligned_cols=22 Identities=9% Similarity=0.282 Sum_probs=20.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|+|++|+|||||++.+..
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhh
Confidence 5789999999999999998875
No 245
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.84 E-value=7.5e-06 Score=52.26 Aligned_cols=21 Identities=10% Similarity=0.017 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+.++|++|+||||+|+.+++
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999988
No 246
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.84 E-value=1.2e-05 Score=46.88 Aligned_cols=22 Identities=9% Similarity=-0.043 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..|.+.|++|+||||+|+.+..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999877
No 247
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.84 E-value=1.2e-05 Score=48.04 Aligned_cols=23 Identities=4% Similarity=0.076 Sum_probs=20.5
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..++.|.|++|+|||||+..++.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35889999999999999998876
No 248
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=97.83 E-value=2.1e-05 Score=50.43 Aligned_cols=51 Identities=12% Similarity=0.237 Sum_probs=34.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCC----eeEEEEeCCC-CCHHHHHHHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFD----CHAWVRVSIS-YDFRMVLDDIIK 55 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~----~~~wv~~~~~-~~~~~ll~~il~ 55 (93)
.-++|.|.+|+|||+|+..+.++... +-+ .++++-+.+. ....++++.+.+
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~ 207 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQ 207 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhh
Confidence 34689999999999999998884332 222 5566666654 455666676654
No 249
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.83 E-value=1e-05 Score=48.53 Aligned_cols=22 Identities=9% Similarity=0.068 Sum_probs=19.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.-+.++|++|+|||++|+.+.+
T Consensus 51 ~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999987
No 250
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.83 E-value=1.1e-05 Score=49.32 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=20.8
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+|.|.|+.|+||||||..++.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHH
Confidence 35789999999999999999887
No 251
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.83 E-value=3.8e-06 Score=50.79 Aligned_cols=22 Identities=9% Similarity=-0.037 Sum_probs=17.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|++|+||||+|+.+..
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998876
No 252
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.83 E-value=4.8e-05 Score=55.24 Aligned_cols=84 Identities=13% Similarity=0.003 Sum_probs=56.4
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHHHhhCCCCCCccccC-CCHHHHHHHHHH
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDIIKSVMPPSRVSVIIG-EDYQLKKSILRD 80 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il~~l~~~~~~~~~~~-~~~~~l~~~l~~ 80 (93)
.++|-|.|+.|+||||||-++.. +....=..++|+...+..++.- ++.++.....-.-.. .+.++.+..+..
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~ 1503 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1503 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHH
Confidence 37899999999999999999887 4444556788888877777653 566664432211112 555666666666
Q ss_pred hcCCC-eEEEEee
Q 037564 81 YLTNK-KYFIVLD 92 (93)
Q Consensus 81 ~L~~k-r~LlVlD 92 (93)
.++.. --++|+|
T Consensus 1504 ~~~s~~~~~vvvD 1516 (1706)
T 3cmw_A 1504 LARSGAVDVIVVD 1516 (1706)
T ss_dssp HHHHTCCSEEEES
T ss_pred HHHcCCCCEEEEc
Confidence 66443 3477777
No 253
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.81 E-value=1.1e-05 Score=49.99 Aligned_cols=22 Identities=9% Similarity=0.054 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+-+.++|++|+|||++|+.+++
T Consensus 52 ~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999987
No 254
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.81 E-value=1.3e-05 Score=49.59 Aligned_cols=22 Identities=9% Similarity=0.120 Sum_probs=20.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|.|.|+.|+|||||+..++.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999988
No 255
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=97.81 E-value=0.00018 Score=46.66 Aligned_cols=87 Identities=17% Similarity=0.184 Sum_probs=48.7
Q ss_pred ceeeEEcCCCCcHHHHH-HHHhcCcccccCCC-eeEEEEeCCCC-CHHHHHHHHHHhhCCCCCCcc-cc-CCCHHHH---
Q 037564 3 GCKPILDSSSFDKTAFT-ADTYNNNHVKFYFD-CHAWVRVSISY-DFRMVLDDIIKSVMPPSRVSV-II-GEDYQLK--- 74 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa-~~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~ll~~il~~l~~~~~~~~-~~-~~~~~~l--- 74 (93)
.-++|.|.+|+|||+|| ..+.+ .. +-+ .++++-+.+.. ...++.+.+.+.-......-. .. +.+....
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~--~~--~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a 238 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIIN--QK--GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLA 238 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHG--GG--SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHH
T ss_pred CEEEEECCCCCCchHHHHHHHHH--hh--cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHH
Confidence 45789999999999995 46666 22 234 35677777654 446666666653221111000 00 0111111
Q ss_pred ---HHHHHHhc--CCCeEEEEeeC
Q 037564 75 ---KSILRDYL--TNKKYFIVLDD 93 (93)
Q Consensus 75 ---~~~l~~~L--~~kr~LlVlDD 93 (93)
.-.+-+++ +++.+|+++||
T Consensus 239 ~~~a~tiAEyfrd~G~dVLl~~Ds 262 (502)
T 2qe7_A 239 PYAGCAMGEYFMYKGKHALVVYDD 262 (502)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHcCCcEEEEEec
Confidence 12344444 57899999997
No 256
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.81 E-value=1.4e-05 Score=47.74 Aligned_cols=22 Identities=18% Similarity=0.051 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999876
No 257
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.81 E-value=1.3e-05 Score=46.35 Aligned_cols=21 Identities=10% Similarity=-0.054 Sum_probs=19.2
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+|.+.|++|+||+|.|+.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578899999999999999887
No 258
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=97.80 E-value=4.1e-05 Score=49.60 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=32.0
Q ss_pred ceeeEEcCCCCcHHHHH-HHHhcCcccccCCC-eeEEEEeCCCC-CHHHHHHHHHH
Q 037564 3 GCKPILDSSSFDKTAFT-ADTYNNNHVKFYFD-CHAWVRVSISY-DFRMVLDDIIK 55 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa-~~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~ll~~il~ 55 (93)
.-++|.|.+|+|||+|| ..+.+. .. -+ .++++-+.+.. ...++.+.+.+
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~--~~--~dv~~V~~~iGeR~~Ev~~~~~~~~~ 215 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQ--QG--QNVICVYVAIGQKASSVAQVVTNFQE 215 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTC--CT--TTCEEEEEEESCCHHHHHHHHHHTGG
T ss_pred CEEEEecCCCCCccHHHHHHHHHh--hc--CCcEEEEEEcCCCchHHHHHHHHHHh
Confidence 35789999999999995 567663 22 33 35677777654 34455555543
No 259
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.79 E-value=1.3e-05 Score=49.75 Aligned_cols=22 Identities=9% Similarity=0.052 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+.++|++|+|||++|+.+++
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999988
No 260
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.79 E-value=1.5e-05 Score=44.68 Aligned_cols=22 Identities=14% Similarity=0.096 Sum_probs=19.7
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998873
No 261
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.79 E-value=9.8e-05 Score=47.93 Aligned_cols=22 Identities=9% Similarity=-0.017 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||++.++.
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g 303 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVE 303 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 4789999999999999999886
No 262
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.78 E-value=1.6e-05 Score=49.77 Aligned_cols=22 Identities=14% Similarity=-0.017 Sum_probs=20.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|+|++|+|||||++.+..
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999886
No 263
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.78 E-value=1.6e-05 Score=48.16 Aligned_cols=22 Identities=14% Similarity=0.048 Sum_probs=20.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.+..
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999887
No 264
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.78 E-value=1.9e-05 Score=44.21 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=18.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHh
Q 037564 3 GCKPILDSSSFDKTAFTADTY 23 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~ 23 (93)
++.+|+|+.|+|||||+..++
T Consensus 27 g~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999875
No 265
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.78 E-value=1.5e-05 Score=51.53 Aligned_cols=22 Identities=9% Similarity=-0.049 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|+|.+|+|||||++.+..
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHH
Confidence 5899999999999999999876
No 266
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.77 E-value=1.7e-05 Score=44.78 Aligned_cols=22 Identities=14% Similarity=0.132 Sum_probs=19.7
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.++|.|.+|+|||||.+.+...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999998864
No 267
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.77 E-value=1.5e-05 Score=48.89 Aligned_cols=23 Identities=13% Similarity=0.065 Sum_probs=20.8
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+|.|.|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 35789999999999999999987
No 268
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.77 E-value=1.6e-05 Score=45.85 Aligned_cols=23 Identities=13% Similarity=0.068 Sum_probs=20.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
..|.|+|.+|+|||||+.++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57889999999999999998873
No 269
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=97.77 E-value=4.1e-05 Score=49.62 Aligned_cols=49 Identities=14% Similarity=0.143 Sum_probs=33.2
Q ss_pred ceeeEEcCCCCcHHHHH-HHHhcCcccccCCC-eeEEEEeCCCC-CHHHHHHHHHH
Q 037564 3 GCKPILDSSSFDKTAFT-ADTYNNNHVKFYFD-CHAWVRVSISY-DFRMVLDDIIK 55 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa-~~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~ll~~il~ 55 (93)
.-++|.|.+|+|||+|| ..+.+. . .-+ .++++-+.+.. ...++.+.+.+
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~--~--~~dv~~V~~~IGeR~~Ev~e~~~~~~~ 227 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQ--K--GQGVYCIYVAIGQKKSAIARIIDKLRQ 227 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTT--T--TTTEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCccHHHHHHHHHh--h--cCCcEEEEEEcCCCcHHHHHHHHHHHh
Confidence 45789999999999995 466663 2 234 35677777654 44566666665
No 270
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.77 E-value=1.5e-05 Score=47.78 Aligned_cols=22 Identities=9% Similarity=0.153 Sum_probs=19.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
=.++|+|++|+|||||.+.++.
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999998875
No 271
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.76 E-value=1.2e-05 Score=49.00 Aligned_cols=22 Identities=9% Similarity=0.104 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|+|++|+|||||++.+..
T Consensus 81 e~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTT
T ss_pred CEEEEECCCCchHHHHHHHHHc
Confidence 4789999999999999999876
No 272
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.76 E-value=1.8e-05 Score=49.25 Aligned_cols=22 Identities=18% Similarity=0.036 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.+..
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 4789999999999999999876
No 273
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.75 E-value=1.7e-05 Score=49.18 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=20.1
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
...++|+|++|+|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998765
No 274
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.75 E-value=2e-05 Score=43.38 Aligned_cols=23 Identities=4% Similarity=0.016 Sum_probs=20.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
..|++.|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999874
No 275
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.75 E-value=1.7e-05 Score=46.44 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=20.9
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+..|+|.|..|+||||+++.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999887
No 276
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.75 E-value=2.2e-05 Score=45.86 Aligned_cols=22 Identities=14% Similarity=-0.115 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|++|+||||+++.+..
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998875
No 277
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.75 E-value=1.9e-05 Score=44.75 Aligned_cols=22 Identities=14% Similarity=0.132 Sum_probs=19.7
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.|+|.|.+|+|||||.+.+...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999998874
No 278
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.75 E-value=3.3e-05 Score=45.29 Aligned_cols=22 Identities=9% Similarity=-0.144 Sum_probs=17.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..|.+.|+.|+||||+++.+..
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999988
No 279
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.74 E-value=2e-05 Score=48.50 Aligned_cols=22 Identities=9% Similarity=-0.047 Sum_probs=19.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+.++|++|+||||+|+.+.+
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~ 60 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAK 60 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999887
No 280
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.74 E-value=2.1e-05 Score=48.89 Aligned_cols=22 Identities=18% Similarity=0.021 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.++.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4789999999999999999876
No 281
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.74 E-value=6.3e-05 Score=44.34 Aligned_cols=22 Identities=9% Similarity=-0.135 Sum_probs=20.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..|.+.|+.|+||||+++.+..
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999987
No 282
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.74 E-value=2.2e-05 Score=49.06 Aligned_cols=22 Identities=9% Similarity=0.006 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.+..
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHhc
Confidence 4789999999999999999876
No 283
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.73 E-value=1.7e-05 Score=48.46 Aligned_cols=20 Identities=10% Similarity=-0.054 Sum_probs=18.9
Q ss_pred eeEEcCCCCcHHHHHHHHhc
Q 037564 5 KPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.++|++|+||||+|+.+.+
T Consensus 61 ~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999988
No 284
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.73 E-value=7.5e-05 Score=43.32 Aligned_cols=52 Identities=12% Similarity=-0.035 Sum_probs=32.0
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcCccccc-CCCeeEEEEeCCCCCHHHHHHHHHH
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNNNHVKF-YFDCHAWVRVSISYDFRMVLDDIIK 55 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~~~~~~-~f~~~~wv~~~~~~~~~~ll~~il~ 55 (93)
+..|.+.|+.|+||||+++.+.. .+.. .+....+..-+......+.+++++.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~--~l~~~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVE--TLEQLGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHH--HHHHTTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH--HHHHcCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 35789999999999999999987 4433 2322333222222233455555554
No 285
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.72 E-value=2.4e-05 Score=48.77 Aligned_cols=22 Identities=18% Similarity=0.028 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.+..
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHC
Confidence 4789999999999999999886
No 286
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.72 E-value=2.3e-05 Score=48.84 Aligned_cols=22 Identities=14% Similarity=0.092 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 4789999999999999999876
No 287
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.72 E-value=2e-05 Score=45.22 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
++|.++|.+|+|||||+..+..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~ 52 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIE 52 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999999887
No 288
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.72 E-value=2.4e-05 Score=48.92 Aligned_cols=22 Identities=18% Similarity=0.009 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.++.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCcHHHHHHHHHHc
Confidence 4789999999999999999876
No 289
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.71 E-value=2.5e-05 Score=45.09 Aligned_cols=23 Identities=13% Similarity=-0.012 Sum_probs=20.6
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+.|.|.|++|+||||||..+..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999987
No 290
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.71 E-value=1.7e-05 Score=48.59 Aligned_cols=20 Identities=5% Similarity=-0.049 Sum_probs=18.4
Q ss_pred eeEEcCCCCcHHHHHHHHhc
Q 037564 5 KPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.++|++|+||||+++.++.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998776
No 291
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.70 E-value=2.6e-05 Score=48.95 Aligned_cols=22 Identities=9% Similarity=0.004 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.+..
T Consensus 30 e~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHc
Confidence 4789999999999999999886
No 292
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.70 E-value=2.6e-05 Score=48.80 Aligned_cols=22 Identities=18% Similarity=0.010 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.++.
T Consensus 38 e~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHHc
Confidence 4789999999999999999876
No 293
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.69 E-value=2.8e-05 Score=45.81 Aligned_cols=22 Identities=14% Similarity=0.051 Sum_probs=19.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.++.+.|.+|+||||++..+..
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHH
Confidence 4678889999999999999974
No 294
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.69 E-value=2.1e-05 Score=47.47 Aligned_cols=21 Identities=10% Similarity=-0.069 Sum_probs=19.3
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-+.++|++|+|||++|+.+++
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~ 68 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALAR 68 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHH
Confidence 378999999999999999988
No 295
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.69 E-value=2.8e-05 Score=43.37 Aligned_cols=22 Identities=5% Similarity=0.077 Sum_probs=20.0
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.|++.|.+|+|||||...+...
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999874
No 296
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.69 E-value=0.00063 Score=44.23 Aligned_cols=22 Identities=9% Similarity=-0.075 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
++|.|+|.+|+||||++.++..
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999885
No 297
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.68 E-value=0.00011 Score=50.17 Aligned_cols=22 Identities=14% Similarity=0.031 Sum_probs=19.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+=+.++|++|+|||.+|+.+++
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~ 533 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHH
T ss_pred ceEEEecCCCCCchHHHHHHHH
Confidence 3467899999999999999999
No 298
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.68 E-value=5.3e-05 Score=44.29 Aligned_cols=22 Identities=9% Similarity=-0.206 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..|.+.|+.|+||||+++.+..
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~ 43 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAE 43 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999988
No 299
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.68 E-value=1.8e-05 Score=45.92 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=18.8
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+.++|++|+||||+|..+++
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999888776
No 300
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.67 E-value=2.3e-05 Score=48.07 Aligned_cols=20 Identities=10% Similarity=-0.057 Sum_probs=18.8
Q ss_pred eeEEcCCCCcHHHHHHHHhc
Q 037564 5 KPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.++|++|+||||+|+.++.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999887
No 301
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.67 E-value=2.1e-05 Score=48.81 Aligned_cols=22 Identities=23% Similarity=0.087 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.++.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHT
T ss_pred CEEEEECCCCccHHHHHHHHHc
Confidence 4789999999999999999886
No 302
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.67 E-value=2.9e-05 Score=48.25 Aligned_cols=23 Identities=9% Similarity=0.055 Sum_probs=20.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
..++|+|++|+|||||++.+...
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 47899999999999999998873
No 303
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.65 E-value=1.8e-05 Score=46.89 Aligned_cols=22 Identities=14% Similarity=-0.009 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..|+|.|..|+||||+++.+..
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGG
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998877
No 304
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.65 E-value=3.1e-05 Score=44.50 Aligned_cols=22 Identities=5% Similarity=-0.056 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|+.|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998766
No 305
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=97.65 E-value=3.1e-05 Score=49.61 Aligned_cols=53 Identities=11% Similarity=0.189 Sum_probs=34.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccc--------cCCC-eeEEEEeCCC-CCHHHHHHHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVK--------FYFD-CHAWVRVSIS-YDFRMVLDDIIK 55 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~--------~~f~-~~~wv~~~~~-~~~~~ll~~il~ 55 (93)
.-++|.|.+|+|||+|+..+.+..... ++=+ .++++-+.+. ....++.+.+.+
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~ 210 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFER 210 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhh
Confidence 356899999999999999988743331 1111 4566666654 345666666554
No 306
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.64 E-value=3.6e-05 Score=42.28 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=19.7
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||...+...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 4789999999999999998874
No 307
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=97.64 E-value=4e-06 Score=52.91 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=19.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.-++|.|.+|+|||+|+..+.+
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHH
Confidence 4578999999999999998887
No 308
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=97.64 E-value=7.8e-05 Score=48.36 Aligned_cols=53 Identities=9% Similarity=0.095 Sum_probs=33.8
Q ss_pred ceeeEEcCCCCcHHHHH-HHHhcCccc----ccCCC-eeEEEEeCCCC-CHHHHHHHHHH
Q 037564 3 GCKPILDSSSFDKTAFT-ADTYNNNHV----KFYFD-CHAWVRVSISY-DFRMVLDDIIK 55 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa-~~~~~~~~~----~~~f~-~~~wv~~~~~~-~~~~ll~~il~ 55 (93)
.-++|.|.+|+|||+|| ..+.+.... .++-+ .++++-+.+.. ...++.+.+.+
T Consensus 163 QR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~ 222 (510)
T 2ck3_A 163 QRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTD 222 (510)
T ss_dssp CBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHH
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHh
Confidence 35789999999999994 456663221 01233 46777777654 44566666665
No 309
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.64 E-value=4.6e-05 Score=46.28 Aligned_cols=22 Identities=14% Similarity=-0.041 Sum_probs=19.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.-|.|+|.+|+|||++|+.+++
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~ 47 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHA 47 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHH
T ss_pred CcEEEECCCCchHHHHHHHHHH
Confidence 3578999999999999999987
No 310
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.64 E-value=2.4e-05 Score=47.79 Aligned_cols=23 Identities=13% Similarity=0.062 Sum_probs=20.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.++.|.|+.|+|||||.+.+...
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 47899999999999999999863
No 311
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.63 E-value=3.6e-05 Score=47.37 Aligned_cols=22 Identities=9% Similarity=0.080 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..++|+|++|+|||||++.+..
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g 193 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIME 193 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999887
No 312
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.63 E-value=1.8e-05 Score=49.15 Aligned_cols=22 Identities=27% Similarity=0.107 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.++.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4789999999999999999876
No 313
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=97.63 E-value=0.00044 Score=44.89 Aligned_cols=50 Identities=14% Similarity=0.092 Sum_probs=33.4
Q ss_pred ceeeEEcCCCCcHHHHH-HHHhcCcccccCCC-eeEEEEeCCCC-CHHHHHHHHHHh
Q 037564 3 GCKPILDSSSFDKTAFT-ADTYNNNHVKFYFD-CHAWVRVSISY-DFRMVLDDIIKS 56 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa-~~~~~~~~~~~~f~-~~~wv~~~~~~-~~~~ll~~il~~ 56 (93)
.-++|.|.+|+|||+|+ ..+.+. . +-+ .++|+-+.+.. ...++.+.+.+.
T Consensus 163 QR~~Ifg~~g~GKT~l~l~~I~n~--~--~~dv~~V~~~IGeR~~ev~e~~~~l~~~ 215 (513)
T 3oaa_A 163 QRELIIGDRQTGKTALAIDAIINQ--R--DSGIKCIYVAIGQKASTISNVVRKLEEH 215 (513)
T ss_dssp CBCEEEESSSSSHHHHHHHHHHTT--S--SSSCEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CEEEeecCCCCCcchHHHHHHHhh--c--cCCceEEEEEecCChHHHHHHHHHHhhc
Confidence 35789999999999996 566662 1 223 35778887654 446666665543
No 314
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.62 E-value=2.5e-05 Score=49.70 Aligned_cols=22 Identities=14% Similarity=0.021 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
++|.++|.+|+||||++..+..
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998877
No 315
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.62 E-value=3.3e-05 Score=48.25 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|+|++|+||||+++.+..
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999998876
No 316
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.62 E-value=3.4e-05 Score=50.15 Aligned_cols=22 Identities=9% Similarity=-0.014 Sum_probs=20.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|.++|++|+||||+|+.+..
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~ 57 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTR 57 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4788999999999999999876
No 317
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.62 E-value=3.4e-05 Score=41.84 Aligned_cols=22 Identities=9% Similarity=0.096 Sum_probs=19.6
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998864
No 318
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.62 E-value=2e-05 Score=48.00 Aligned_cols=21 Identities=10% Similarity=-0.083 Sum_probs=19.1
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-+.++|++|+|||+||+.+.+
T Consensus 48 ~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 477899999999999999887
No 319
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.62 E-value=3.5e-05 Score=47.94 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=19.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
++++|.|+.|+|||||.+.+..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999998765
No 320
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.62 E-value=7.4e-05 Score=45.14 Aligned_cols=23 Identities=4% Similarity=0.098 Sum_probs=20.3
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.++|+|+|-||+||||+|..+..
T Consensus 41 ~~vI~v~~KGGvGKTT~a~nLA~ 63 (307)
T 3end_A 41 AKVFAVYGKGGIGKSTTSSNLSA 63 (307)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCccHHHHHHHHHH
Confidence 46888999999999999998877
No 321
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.61 E-value=4.1e-05 Score=42.50 Aligned_cols=22 Identities=9% Similarity=-0.019 Sum_probs=19.9
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.|+|+|.+|+|||||...+...
T Consensus 6 ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 322
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.61 E-value=4.2e-05 Score=41.71 Aligned_cols=22 Identities=5% Similarity=0.104 Sum_probs=19.4
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||...+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4788999999999999998864
No 323
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.61 E-value=2.5e-05 Score=51.14 Aligned_cols=22 Identities=9% Similarity=-0.147 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||++.+..
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHH
Confidence 4789999999999999999887
No 324
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.61 E-value=3.7e-05 Score=49.05 Aligned_cols=22 Identities=14% Similarity=0.054 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+-+.++|++|+|||++|+.+.+
T Consensus 64 ~~iLl~GppGtGKT~la~ala~ 85 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQ 85 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHH
Confidence 4578899999999999999988
No 325
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.61 E-value=3.6e-05 Score=41.72 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999998764
No 326
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.60 E-value=4.3e-05 Score=48.09 Aligned_cols=22 Identities=9% Similarity=0.067 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.+..
T Consensus 48 e~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 4789999999999999999876
No 327
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.60 E-value=4.3e-05 Score=47.12 Aligned_cols=22 Identities=9% Similarity=-0.144 Sum_probs=19.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.+..
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999873
No 328
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.60 E-value=4.6e-05 Score=41.68 Aligned_cols=21 Identities=10% Similarity=0.056 Sum_probs=18.6
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-|.+.|.+|+|||||...+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999864
No 329
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.60 E-value=3.3e-05 Score=48.83 Aligned_cols=22 Identities=9% Similarity=0.105 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|++|+||||||..++.
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5789999999999999998876
No 330
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.60 E-value=2e-05 Score=44.82 Aligned_cols=23 Identities=13% Similarity=-0.071 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
..|+|+|.+|+|||||.+.+...
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999988763
No 331
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.60 E-value=1.6e-05 Score=48.58 Aligned_cols=21 Identities=5% Similarity=-0.059 Sum_probs=19.2
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-+.++|++|+|||++|+.+++
T Consensus 47 ~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHH
Confidence 378999999999999999987
No 332
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.59 E-value=3.6e-05 Score=49.85 Aligned_cols=22 Identities=9% Similarity=0.007 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+-+.++|++|+|||+||+.+.+
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGG
T ss_pred CeeEeecCchHHHHHHHHHHHH
Confidence 3578999999999999999988
No 333
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.59 E-value=3.9e-05 Score=46.57 Aligned_cols=24 Identities=13% Similarity=0.242 Sum_probs=21.4
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcC
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
++.|+|+|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 357999999999999999999875
No 334
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.59 E-value=4.8e-05 Score=41.57 Aligned_cols=22 Identities=5% Similarity=0.122 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 335
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.59 E-value=4.1e-05 Score=41.77 Aligned_cols=22 Identities=14% Similarity=-0.005 Sum_probs=19.3
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998753
No 336
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.58 E-value=4.4e-05 Score=48.98 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=20.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.++.-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 57899999999999999988763
No 337
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.57 E-value=4.3e-05 Score=42.83 Aligned_cols=22 Identities=14% Similarity=0.013 Sum_probs=19.9
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.|.++|.+|+|||||...+...
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998864
No 338
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=97.57 E-value=4.4e-05 Score=49.07 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=35.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccC--CCeeEEEEeCCC-CCHHHHHHHHHHh
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFY--FDCHAWVRVSIS-YDFRMVLDDIIKS 56 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~--f~~~~wv~~~~~-~~~~~ll~~il~~ 56 (93)
.-++|.|.+|+|||+|+..++.+....+. =+.++++-+.+. ....++.+.+.+.
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~ 209 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKT 209 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhc
Confidence 35688999999999999988874333211 135667666654 3456677776653
No 339
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.56 E-value=5.1e-05 Score=47.00 Aligned_cols=22 Identities=9% Similarity=-0.141 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|+|.+|+|||||+..+..
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999865
No 340
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.56 E-value=5.1e-05 Score=42.41 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||+..+...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4788999999999999999864
No 341
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=97.56 E-value=0.00024 Score=46.69 Aligned_cols=47 Identities=13% Similarity=0.064 Sum_probs=34.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCC-HHHHHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYD-FRMVLDDI 53 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~-~~~ll~~i 53 (93)
.-++|.|.+|+|||+|+..+.+. .+-+.++++-+.+..+ ..++++.+
T Consensus 228 qr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 228 GTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp CEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHHT
T ss_pred CeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 45789999999999999998762 2335678888876654 45555554
No 342
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.56 E-value=0.00013 Score=42.83 Aligned_cols=39 Identities=8% Similarity=-0.279 Sum_probs=25.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhcCccccc-CCCeeEEEEeCCCCC
Q 037564 4 CKPILDSSSFDKTAFTADTYNNNHVKF-YFDCHAWVRVSISYD 45 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~~~~~~-~f~~~~wv~~~~~~~ 45 (93)
.|.+.|.||+||||+|..+.. .... .++ +.++.+....+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~--~l~~~G~~-V~v~d~D~q~~ 47 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAH--AQLRQGVR-VMAGVVETHGR 47 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHH--HHHHTTCC-EEEEECCCTTC
T ss_pred EEEEECCCCCcHHHHHHHHHH--HHHHCCCC-EEEEEeCCCCC
Confidence 367889999999999988887 4333 233 33444444333
No 343
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.56 E-value=4.1e-05 Score=47.67 Aligned_cols=21 Identities=14% Similarity=0.330 Sum_probs=18.8
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.|.++|++|+||||+++.++.
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 388999999999999998776
No 344
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.55 E-value=3.9e-05 Score=46.57 Aligned_cols=21 Identities=10% Similarity=0.202 Sum_probs=18.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-|+|+|.+|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 358999999999999999765
No 345
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.55 E-value=5e-05 Score=41.27 Aligned_cols=22 Identities=23% Similarity=0.219 Sum_probs=19.3
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998754
No 346
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.55 E-value=5.8e-05 Score=41.04 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||...+...
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 347
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.55 E-value=4.8e-05 Score=42.47 Aligned_cols=22 Identities=18% Similarity=0.066 Sum_probs=19.4
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4688999999999999998864
No 348
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.55 E-value=0.00033 Score=39.63 Aligned_cols=41 Identities=12% Similarity=-0.094 Sum_probs=26.6
Q ss_pred ceeeEE-cCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCC
Q 037564 3 GCKPIL-DSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYD 45 (93)
Q Consensus 3 ~~i~i~-G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 45 (93)
++|+|+ +-||+||||+|..+.. .+...-..+..+......+
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~--~la~~g~~vlliD~D~~~~ 43 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIAT--ALSRSGYNIAVVDTDPQMS 43 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHH--HHHHTTCCEEEEECCTTCH
T ss_pred eEEEEEeCCCCccHHHHHHHHHH--HHHHCCCeEEEEECCCCCC
Confidence 467777 6789999999998887 4443322345555544433
No 349
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.54 E-value=5.7e-05 Score=47.89 Aligned_cols=22 Identities=9% Similarity=0.046 Sum_probs=20.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.+..
T Consensus 70 ~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999987
No 350
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=97.54 E-value=0.00013 Score=43.12 Aligned_cols=22 Identities=14% Similarity=0.102 Sum_probs=19.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
++|+|.|-||+||||+|..+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~ 23 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTS 23 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHH
Confidence 5788899999999999998877
No 351
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.54 E-value=5.1e-05 Score=41.48 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||...+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999998864
No 352
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.54 E-value=6.4e-05 Score=45.66 Aligned_cols=21 Identities=10% Similarity=-0.056 Sum_probs=19.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHh
Q 037564 3 GCKPILDSSSFDKTAFTADTY 23 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~ 23 (93)
.++++.|++|+|||||.+.+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 478999999999999999997
No 353
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.54 E-value=5e-05 Score=43.59 Aligned_cols=22 Identities=5% Similarity=-0.260 Sum_probs=20.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|+.|+||||+++.+..
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~ 28 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAE 28 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHH
Confidence 4899999999999999999887
No 354
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.54 E-value=6e-05 Score=41.03 Aligned_cols=22 Identities=23% Similarity=0.216 Sum_probs=19.4
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||...+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998764
No 355
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.54 E-value=4.3e-05 Score=48.86 Aligned_cols=22 Identities=9% Similarity=0.068 Sum_probs=19.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+-|.++|++|+||||+|+.++.
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHHHH
Confidence 3578899999999999999988
No 356
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.54 E-value=4.6e-05 Score=45.83 Aligned_cols=20 Identities=15% Similarity=-0.066 Sum_probs=18.8
Q ss_pred eeEEcCCCCcHHHHHHHHhc
Q 037564 5 KPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.++|++|+|||++|+.+++
T Consensus 41 ~ll~G~~G~GKt~la~~l~~ 60 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALAR 60 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHH
Confidence 78999999999999999887
No 357
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.54 E-value=5.3e-05 Score=41.32 Aligned_cols=22 Identities=14% Similarity=0.146 Sum_probs=19.3
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 358
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.54 E-value=3.8e-05 Score=49.25 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=18.9
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-+.++|++|+|||++|+.++.
T Consensus 203 ~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999887
No 359
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.54 E-value=6.1e-05 Score=42.64 Aligned_cols=23 Identities=13% Similarity=-0.123 Sum_probs=19.3
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..++.++|+.|+||||++.+++.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999999976665
No 360
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.53 E-value=5.3e-05 Score=42.32 Aligned_cols=22 Identities=14% Similarity=0.051 Sum_probs=19.9
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
No 361
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.53 E-value=5.5e-05 Score=41.73 Aligned_cols=22 Identities=18% Similarity=0.148 Sum_probs=19.6
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||...+...
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 362
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.53 E-value=5.9e-05 Score=42.02 Aligned_cols=22 Identities=9% Similarity=0.003 Sum_probs=19.6
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 3789999999999999998875
No 363
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.52 E-value=5.7e-05 Score=41.12 Aligned_cols=20 Identities=10% Similarity=-0.077 Sum_probs=18.3
Q ss_pred eeEEcCCCCcHHHHHHHHhc
Q 037564 5 KPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~ 24 (93)
|.+.|.+|+|||||...+..
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999999865
No 364
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.52 E-value=0.00012 Score=48.25 Aligned_cols=22 Identities=5% Similarity=0.015 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..+.|+|++|+||||||+.++.
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~ 82 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAE 82 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHhc
Confidence 4688999999999999999988
No 365
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.52 E-value=6.5e-05 Score=41.41 Aligned_cols=22 Identities=18% Similarity=0.089 Sum_probs=19.4
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||...+...
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 366
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.52 E-value=6.1e-05 Score=42.23 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
..|.++|.+|+|||||...+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999874
No 367
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.52 E-value=5.8e-05 Score=46.78 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=20.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.+..
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g 93 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICN 93 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999988
No 368
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.52 E-value=6.8e-05 Score=46.72 Aligned_cols=23 Identities=9% Similarity=0.007 Sum_probs=20.7
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.++++.|++|+|||||.+.+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCC
T ss_pred CEEEEECCCCccHHHHHHHHhcc
Confidence 47899999999999999999874
No 369
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.52 E-value=5.6e-05 Score=41.72 Aligned_cols=22 Identities=27% Similarity=0.220 Sum_probs=19.4
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||...+...
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 370
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.52 E-value=5.7e-05 Score=41.24 Aligned_cols=22 Identities=9% Similarity=0.063 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||...+...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4788999999999999998864
No 371
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.52 E-value=6.5e-05 Score=46.53 Aligned_cols=22 Identities=9% Similarity=-0.109 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|+|.+|+|||||...+..
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4789999999999999999875
No 372
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.51 E-value=5.7e-05 Score=42.35 Aligned_cols=22 Identities=18% Similarity=0.080 Sum_probs=19.0
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999887764
No 373
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.51 E-value=5.3e-05 Score=42.92 Aligned_cols=21 Identities=10% Similarity=0.056 Sum_probs=18.6
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-|.++|.+|+|||||...+..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999853
No 374
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.51 E-value=4.7e-05 Score=43.17 Aligned_cols=22 Identities=14% Similarity=-0.002 Sum_probs=19.6
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|+++|.+|+|||||...+...
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998763
No 375
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.51 E-value=8.3e-05 Score=40.98 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
..|.+.|.+|+|||||...+...
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998763
No 376
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.51 E-value=6.4e-05 Score=41.99 Aligned_cols=22 Identities=14% Similarity=0.235 Sum_probs=20.0
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.|.+.|.+|+|||||...+...
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999875
No 377
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.51 E-value=5.7e-05 Score=43.19 Aligned_cols=22 Identities=14% Similarity=0.013 Sum_probs=19.9
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.|.++|.+|+|||||...+...
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998874
No 378
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.51 E-value=5.9e-05 Score=41.55 Aligned_cols=22 Identities=14% Similarity=0.142 Sum_probs=19.4
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||...+...
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998764
No 379
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.51 E-value=5.6e-05 Score=50.21 Aligned_cols=22 Identities=14% Similarity=-0.080 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|.+.|++|+||||+|+.+..
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~ 74 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEE 74 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHH
Confidence 4789999999999999999877
No 380
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.50 E-value=5.6e-05 Score=48.41 Aligned_cols=21 Identities=10% Similarity=-0.021 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+|.++|++|+||||+++.+..
T Consensus 41 ~IvlvGlpGsGKSTia~~La~ 61 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTR 61 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999876
No 381
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.50 E-value=6.3e-05 Score=41.02 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=19.3
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998853
No 382
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.50 E-value=6.1e-05 Score=41.12 Aligned_cols=22 Identities=9% Similarity=0.113 Sum_probs=19.4
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 383
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.50 E-value=6e-05 Score=41.57 Aligned_cols=22 Identities=14% Similarity=0.155 Sum_probs=19.7
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||...+...
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999998764
No 384
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.50 E-value=6.2e-05 Score=47.90 Aligned_cols=21 Identities=10% Similarity=0.241 Sum_probs=19.2
Q ss_pred eeEEcCCCCcHHHHHHHHhcC
Q 037564 5 KPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~~ 25 (93)
++|+|++|+|||||.+.++.-
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 899999999999999998763
No 385
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.49 E-value=6.4e-05 Score=47.71 Aligned_cols=22 Identities=9% Similarity=0.025 Sum_probs=20.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|+.|+||||+.+.+..
T Consensus 168 gii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999998876
No 386
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=97.49 E-value=0.00017 Score=41.93 Aligned_cols=23 Identities=17% Similarity=-0.038 Sum_probs=20.9
Q ss_pred CceeeEEcCCCCcHHHHHHHHhc
Q 037564 2 SGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
...|.+.|+.|+||||+++.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~ 27 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYK 27 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999988
No 387
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.49 E-value=6.2e-05 Score=42.37 Aligned_cols=22 Identities=18% Similarity=0.015 Sum_probs=19.7
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|++.|.+|+|||||...+...
T Consensus 25 ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 25 KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998863
No 388
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.49 E-value=7.4e-05 Score=42.90 Aligned_cols=21 Identities=14% Similarity=0.006 Sum_probs=16.1
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.|-+++..|.||||.|-.+.-
T Consensus 30 ~i~v~tG~GkGKTTaA~Glal 50 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAA 50 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 455666678999999887765
No 389
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.49 E-value=7.4e-05 Score=48.77 Aligned_cols=22 Identities=9% Similarity=-0.082 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|+|++|+|||||++.+..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999886
No 390
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.48 E-value=0.00021 Score=40.52 Aligned_cols=21 Identities=5% Similarity=-0.031 Sum_probs=19.1
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
++.|+|.+|+|||++|.++..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~ 21 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIG 21 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHC
T ss_pred CEEEECCCCCcHHHHHHHHHh
Confidence 378999999999999999987
No 391
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.48 E-value=6.6e-05 Score=42.11 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=19.3
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4789999999999999988764
No 392
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.48 E-value=6.9e-05 Score=41.25 Aligned_cols=22 Identities=9% Similarity=0.043 Sum_probs=19.6
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998864
No 393
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.48 E-value=7.3e-05 Score=48.81 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=20.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||++.++.
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~G 316 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVG 316 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4789999999999999999987
No 394
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=97.48 E-value=6.5e-05 Score=49.41 Aligned_cols=22 Identities=9% Similarity=-0.209 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|.+.|++|+||||+|+.+..
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~ 418 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQV 418 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHH
Confidence 4789999999999999999877
No 395
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.47 E-value=6.8e-05 Score=48.97 Aligned_cols=22 Identities=14% Similarity=0.013 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.+..
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~G 47 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAG 47 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999886
No 396
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.47 E-value=7.1e-05 Score=41.68 Aligned_cols=22 Identities=18% Similarity=0.022 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998863
No 397
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.46 E-value=7.5e-05 Score=40.85 Aligned_cols=22 Identities=18% Similarity=-0.046 Sum_probs=19.4
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||...+...
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998753
No 398
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.46 E-value=8.4e-05 Score=48.52 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=21.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|+.|+|||||++.++.-
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48899999999999999999873
No 399
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.46 E-value=8.6e-05 Score=41.20 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998864
No 400
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.46 E-value=8.5e-05 Score=41.96 Aligned_cols=21 Identities=5% Similarity=0.015 Sum_probs=18.6
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-|.++|.+|+|||||...+..
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999999873
No 401
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.46 E-value=7.4e-05 Score=41.52 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||...+...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999864
No 402
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.46 E-value=7.5e-05 Score=41.88 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|+|+|.+|+|||||...+...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 403
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.45 E-value=7.5e-05 Score=41.50 Aligned_cols=22 Identities=5% Similarity=0.043 Sum_probs=19.4
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||...+...
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998764
No 404
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.45 E-value=9.1e-05 Score=41.86 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=19.7
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998874
No 405
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.45 E-value=0.0001 Score=42.88 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=30.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDII 54 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il 54 (93)
.++.|.|.+|+|||++|.+++.+. ....-..+.|++... +..++.+.+.
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~--~~~~~~~~~~ 79 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEE--RARDLRREMA 79 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSS--CHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccC--CHHHHHHHHH
Confidence 578899999999999999876521 122223455655443 4555555443
No 406
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.45 E-value=7.8e-05 Score=41.67 Aligned_cols=21 Identities=14% Similarity=-0.106 Sum_probs=18.1
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-|.++|.+|+|||||.+.+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999987764
No 407
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.45 E-value=7.9e-05 Score=45.31 Aligned_cols=24 Identities=13% Similarity=0.261 Sum_probs=21.5
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcC
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
++.|+|+|.+|+|||||...+...
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 468999999999999999998874
No 408
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.45 E-value=8e-05 Score=41.28 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=19.2
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988754
No 409
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.44 E-value=9e-05 Score=40.77 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=19.3
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4788999999999999998753
No 410
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.44 E-value=8.5e-05 Score=47.98 Aligned_cols=22 Identities=9% Similarity=-0.023 Sum_probs=19.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999998764
No 411
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.44 E-value=8e-05 Score=41.73 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=19.8
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|+++|.+|+|||||...+...
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999875
No 412
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.44 E-value=9.2e-05 Score=43.17 Aligned_cols=22 Identities=9% Similarity=0.040 Sum_probs=20.0
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|+++|.+|+|||||...+...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5789999999999999998875
No 413
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.44 E-value=0.00018 Score=41.82 Aligned_cols=39 Identities=13% Similarity=-0.039 Sum_probs=25.8
Q ss_pred eeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCC
Q 037564 5 KPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYD 45 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~ 45 (93)
|+|.|-||+||||+|..+.. .+...=..+.-+......+
T Consensus 3 I~vs~kGGvGKTt~a~~LA~--~la~~g~~VlliD~D~~~~ 41 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIK--IMASDYDKIYAVDGDPDSC 41 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHH--HHTTTCSCEEEEEECTTSC
T ss_pred EEEecCCCCCHHHHHHHHHH--HHHHCCCeEEEEeCCCCcC
Confidence 66799999999999999887 4433323344555544333
No 414
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.44 E-value=9.5e-05 Score=40.95 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4789999999999999998864
No 415
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=97.44 E-value=0.00018 Score=43.07 Aligned_cols=22 Identities=14% Similarity=0.080 Sum_probs=19.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
++|+|.|-||+||||+|..+..
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCcCcHHHHHHHHHH
Confidence 5788899999999999998887
No 416
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.44 E-value=9e-05 Score=48.67 Aligned_cols=22 Identities=9% Similarity=0.051 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|+|++|+|||||++.+..
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 4789999999999999999876
No 417
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.44 E-value=9.4e-05 Score=44.87 Aligned_cols=23 Identities=9% Similarity=0.053 Sum_probs=20.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.++++.|++|+|||||.+.+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTT
T ss_pred CeEEEECCCCCcHHHHHHHhccc
Confidence 47899999999999999998763
No 418
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.44 E-value=9.8e-05 Score=49.78 Aligned_cols=21 Identities=14% Similarity=0.107 Sum_probs=19.3
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+.++|++|+|||++|+.+++
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~ 543 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAE 543 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999887
No 419
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.43 E-value=5.3e-05 Score=41.88 Aligned_cols=22 Identities=9% Similarity=0.075 Sum_probs=19.4
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||...+...
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999998864
No 420
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.43 E-value=9.5e-05 Score=40.94 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||...+...
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5789999999999999998853
No 421
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.43 E-value=9.9e-05 Score=41.65 Aligned_cols=22 Identities=5% Similarity=0.070 Sum_probs=19.1
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||.+.+.+.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999987763
No 422
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.43 E-value=8.4e-05 Score=41.86 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 423
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.43 E-value=9.7e-05 Score=41.13 Aligned_cols=23 Identities=13% Similarity=0.047 Sum_probs=20.2
Q ss_pred eeeEEcCCCCcHHHHHHHHhcCc
Q 037564 4 CKPILDSSSFDKTAFTADTYNNN 26 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~~ 26 (93)
-|.+.|.+|+|||||...+....
T Consensus 20 ~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998653
No 424
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.43 E-value=8.3e-05 Score=43.70 Aligned_cols=21 Identities=10% Similarity=-0.095 Sum_probs=19.1
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-+++.|++|+||||+|+.+..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHH
Confidence 478999999999999998877
No 425
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.43 E-value=9.7e-05 Score=45.54 Aligned_cols=22 Identities=9% Similarity=-0.088 Sum_probs=19.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.++++.|.+|+|||||+..+..
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999999864
No 426
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.42 E-value=9.8e-05 Score=48.87 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=21.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|.|++|+|||||++.++.-
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48899999999999999999873
No 427
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.42 E-value=0.0001 Score=40.75 Aligned_cols=22 Identities=9% Similarity=0.061 Sum_probs=19.4
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999998764
No 428
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.42 E-value=8.9e-05 Score=41.00 Aligned_cols=22 Identities=14% Similarity=0.057 Sum_probs=19.4
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 429
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.42 E-value=9e-05 Score=40.92 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=19.4
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||...+...
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 430
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.42 E-value=8.7e-05 Score=47.12 Aligned_cols=21 Identities=10% Similarity=0.218 Sum_probs=19.2
Q ss_pred eeEEcCCCCcHHHHHHHHhcC
Q 037564 5 KPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~~ 25 (93)
|+|+|.+|+|||||.+.++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 689999999999999998864
No 431
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.42 E-value=9e-05 Score=47.28 Aligned_cols=22 Identities=9% Similarity=0.033 Sum_probs=20.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..++|.|++|+|||||++.+..
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag 179 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMAR 179 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999987
No 432
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.42 E-value=0.0001 Score=47.89 Aligned_cols=20 Identities=20% Similarity=0.184 Sum_probs=18.4
Q ss_pred ceeeEEcCCCCcHHHHHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADT 22 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~ 22 (93)
.+++|.|++|+|||||++.+
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 57899999999999999984
No 433
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.42 E-value=0.00011 Score=41.51 Aligned_cols=22 Identities=14% Similarity=0.145 Sum_probs=19.0
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998864
No 434
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.42 E-value=9.7e-05 Score=48.51 Aligned_cols=22 Identities=9% Similarity=0.006 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|+|++|+|||||++.+..
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999876
No 435
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.42 E-value=6.5e-05 Score=41.66 Aligned_cols=22 Identities=18% Similarity=-0.055 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||...+...
T Consensus 20 ~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998753
No 436
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.0001 Score=48.82 Aligned_cols=22 Identities=9% Similarity=-0.009 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||++.+..
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~G 400 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAG 400 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999987
No 437
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.41 E-value=9e-05 Score=41.91 Aligned_cols=22 Identities=27% Similarity=0.225 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.|+|.+|+|||||...+...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999998764
No 438
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.41 E-value=9.6e-05 Score=41.49 Aligned_cols=23 Identities=9% Similarity=-0.122 Sum_probs=20.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.-|.++|.+|+|||||...+...
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999998875
No 439
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.0001 Score=48.79 Aligned_cols=22 Identities=5% Similarity=-0.023 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.+..
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~G 125 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAG 125 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHhc
Confidence 4889999999999999999876
No 440
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.41 E-value=8.8e-05 Score=42.37 Aligned_cols=22 Identities=18% Similarity=0.066 Sum_probs=19.6
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 441
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.41 E-value=0.0001 Score=41.54 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=19.4
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||...+...
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 442
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.41 E-value=9e-05 Score=42.25 Aligned_cols=22 Identities=9% Similarity=0.092 Sum_probs=19.3
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|+++|.+|+|||||...+...
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999998753
No 443
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.41 E-value=0.00013 Score=39.99 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=18.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHh
Q 037564 3 GCKPILDSSSFDKTAFTADTY 23 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~ 23 (93)
++..|+|+.|.||||+...++
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 578899999999999988864
No 444
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=97.41 E-value=0.00011 Score=41.64 Aligned_cols=22 Identities=14% Similarity=0.108 Sum_probs=19.0
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||...+...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4788999999999999998764
No 445
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.40 E-value=9.2e-05 Score=41.62 Aligned_cols=22 Identities=9% Similarity=0.131 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|+++|.+|+|||||...+...
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 446
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.40 E-value=9.7e-05 Score=44.88 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=21.2
Q ss_pred CceeeEEcCCCCcHHHHHHHHhcC
Q 037564 2 SGCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 2 ~~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
++.|+|+|.+|+|||||...+...
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999998874
No 447
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.40 E-value=9.3e-05 Score=41.89 Aligned_cols=22 Identities=18% Similarity=0.116 Sum_probs=19.7
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999998864
No 448
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.40 E-value=9.7e-05 Score=41.64 Aligned_cols=22 Identities=9% Similarity=-0.097 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||...+...
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999764
No 449
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.40 E-value=8.3e-05 Score=48.32 Aligned_cols=22 Identities=5% Similarity=-0.025 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|.+.|++|+||||+|+.+..
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~ 417 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLS 417 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHH
T ss_pred eEEEecccCCCCHHHHHHHHHH
Confidence 4788999999999999999988
No 450
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.40 E-value=9.6e-05 Score=41.46 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=19.3
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||...+...
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 3789999999999999998863
No 451
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.40 E-value=0.00012 Score=40.95 Aligned_cols=22 Identities=18% Similarity=-0.026 Sum_probs=19.6
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999853
No 452
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.40 E-value=9.7e-05 Score=42.11 Aligned_cols=22 Identities=9% Similarity=-0.014 Sum_probs=19.7
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.|.+.|.+|+|||||...+...
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998864
No 453
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.40 E-value=0.0001 Score=41.32 Aligned_cols=22 Identities=9% Similarity=0.096 Sum_probs=19.7
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999998874
No 454
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.39 E-value=0.00011 Score=42.50 Aligned_cols=23 Identities=9% Similarity=0.050 Sum_probs=20.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.-|.++|.+|+|||||...+...
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999875
No 455
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.39 E-value=0.0001 Score=41.28 Aligned_cols=22 Identities=14% Similarity=0.030 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 456
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.39 E-value=0.00011 Score=41.40 Aligned_cols=22 Identities=18% Similarity=0.169 Sum_probs=19.1
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||...+...
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999998864
No 457
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.39 E-value=0.00012 Score=42.00 Aligned_cols=22 Identities=9% Similarity=0.019 Sum_probs=19.1
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
No 458
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.39 E-value=0.00075 Score=39.29 Aligned_cols=90 Identities=10% Similarity=0.009 Sum_probs=45.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCccc-ccCCC-eeEEEEeCCCCCHHHHHHHHHHhhCCCCCC---------------cc
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHV-KFYFD-CHAWVRVSISYDFRMVLDDIIKSVMPPSRV---------------SV 65 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~-~~~f~-~~~wv~~~~~~~~~~ll~~il~~l~~~~~~---------------~~ 65 (93)
+.+.+.|+.|+||||+.....-+... ..... ..+.+.........++.+.+...+...... ..
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 57889999999999866654332111 11111 222222232223344445555444322100 00
Q ss_pred ccC-CCHHHHHHHHHHhcCCCeEEEEeeC
Q 037564 66 IIG-EDYQLKKSILRDYLTNKKYFIVLDD 93 (93)
Q Consensus 66 ~~~-~~~~~l~~~l~~~L~~kr~LlVlDD 93 (93)
.+- .+...+.+.+...+.+-+ ++|+|.
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~~~~-~lVlDE 184 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIRGIS-HVIVDE 184 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCTTCC-EEEECC
T ss_pred eEEEECHHHHHHHHHhhhcCCc-EEEEEC
Confidence 122 466777777776665555 566664
No 459
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.38 E-value=0.0001 Score=41.36 Aligned_cols=22 Identities=9% Similarity=0.048 Sum_probs=19.6
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999998874
No 460
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.38 E-value=0.00011 Score=41.18 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998764
No 461
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.38 E-value=0.00011 Score=48.62 Aligned_cols=22 Identities=14% Similarity=-0.067 Sum_probs=20.2
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|.|++|+|||||.+.+..
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~G 139 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAG 139 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCChHHHHHHHHhC
Confidence 4789999999999999999876
No 462
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.38 E-value=0.00012 Score=47.62 Aligned_cols=22 Identities=9% Similarity=-0.055 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..++|.|+.|+||||+++.+..
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGG
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3689999999999999999887
No 463
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.38 E-value=0.00011 Score=41.25 Aligned_cols=22 Identities=9% Similarity=0.101 Sum_probs=19.4
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 464
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.38 E-value=0.0001 Score=41.35 Aligned_cols=22 Identities=5% Similarity=0.090 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4789999999999999998763
No 465
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.37 E-value=0.00011 Score=41.12 Aligned_cols=22 Identities=18% Similarity=0.122 Sum_probs=19.4
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998754
No 466
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.37 E-value=0.00013 Score=42.08 Aligned_cols=21 Identities=5% Similarity=0.015 Sum_probs=18.8
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-|.|+|.+|+|||||...+..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999999874
No 467
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.36 E-value=0.00011 Score=41.45 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||...+...
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
No 468
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.36 E-value=0.00012 Score=40.96 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=19.6
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998764
No 469
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.36 E-value=0.00012 Score=43.56 Aligned_cols=23 Identities=9% Similarity=0.043 Sum_probs=20.5
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
..|++.|.+|+|||||...+...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999998874
No 470
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.36 E-value=0.00036 Score=42.70 Aligned_cols=22 Identities=23% Similarity=0.027 Sum_probs=18.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+++...|-||+||||+|..+..
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~ 36 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATAL 36 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCchHHHHHHHHHH
Confidence 4566679999999999988765
No 471
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.36 E-value=0.00011 Score=41.19 Aligned_cols=22 Identities=14% Similarity=-0.031 Sum_probs=19.7
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||...+...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 472
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.35 E-value=9e-05 Score=48.79 Aligned_cols=23 Identities=9% Similarity=0.046 Sum_probs=20.6
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.+++|+|++|+|||||++.+..-
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998763
No 473
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.35 E-value=0.00011 Score=40.82 Aligned_cols=22 Identities=18% Similarity=-0.026 Sum_probs=19.6
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999864
No 474
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.35 E-value=6.6e-05 Score=51.11 Aligned_cols=22 Identities=14% Similarity=0.031 Sum_probs=19.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+.+.++|++|+|||+||+.++.
T Consensus 512 ~~vLL~GppGtGKT~Lakala~ 533 (806)
T 1ypw_A 512 KGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp CCCCCBCCTTSSHHHHHHHHHH
T ss_pred ceeEEECCCCCCHHHHHHHHHH
Confidence 4578899999999999999998
No 475
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=97.34 E-value=0.00038 Score=42.96 Aligned_cols=22 Identities=9% Similarity=-0.114 Sum_probs=18.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+++.+.|-||+||||+|..+..
T Consensus 17 ~i~~~sgkGGvGKTt~a~~lA~ 38 (334)
T 3iqw_A 17 RWIFVGGKGGVGKTTTSCSLAI 38 (334)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCccHHHHHHHHHH
Confidence 5677889999999999988765
No 476
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=97.34 E-value=0.00036 Score=40.93 Aligned_cols=39 Identities=8% Similarity=-0.053 Sum_probs=25.4
Q ss_pred CCceeeEE-cCCCCcHHHHHHHHhcCcccccCCCeeEEEEeC
Q 037564 1 FSGCKPIL-DSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVS 41 (93)
Q Consensus 1 ~~~~i~i~-G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~ 41 (93)
|+++|+|+ +-||+||||+|..+.. .+...=..+..+...
T Consensus 1 M~~vi~v~s~kgGvGKTt~a~~LA~--~la~~g~~VlliD~D 40 (260)
T 3q9l_A 1 MARIIVVTSGKGGVGKTTSSAAIAT--GLAQKGKKTVVIDFA 40 (260)
T ss_dssp -CEEEEEECSSTTSSHHHHHHHHHH--HHHHTTCCEEEEECC
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHH--HHHhCCCcEEEEECC
Confidence 56788887 5678999999998877 443322234445544
No 477
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.34 E-value=4.2e-05 Score=46.71 Aligned_cols=23 Identities=9% Similarity=0.046 Sum_probs=20.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
.++++.|++|+|||||.+.+...
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 47899999999999999998763
No 478
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=97.33 E-value=0.00035 Score=43.36 Aligned_cols=22 Identities=9% Similarity=-0.078 Sum_probs=18.9
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+++.+.|.||+||||+|..+..
T Consensus 19 ~i~~~~gkGGvGKTt~a~~lA~ 40 (348)
T 3io3_A 19 KWIFVGGKGGVGKTTTSSSVAV 40 (348)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCcHHHHHHHHHH
Confidence 5788889999999998887764
No 479
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.33 E-value=0.00013 Score=41.39 Aligned_cols=22 Identities=9% Similarity=0.107 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||...+...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 480
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.33 E-value=0.00015 Score=41.35 Aligned_cols=22 Identities=27% Similarity=0.170 Sum_probs=19.6
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4788999999999999998864
No 481
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=97.32 E-value=0.00016 Score=40.91 Aligned_cols=22 Identities=9% Similarity=0.055 Sum_probs=19.4
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
+-+.|.|.+|+||||||..+..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4578899999999999998876
No 482
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.32 E-value=0.00013 Score=40.88 Aligned_cols=22 Identities=14% Similarity=0.129 Sum_probs=19.6
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.+.|.+|+|||||...+...
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4788999999999999998864
No 483
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.32 E-value=0.00011 Score=48.40 Aligned_cols=22 Identities=9% Similarity=0.016 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+++|+|++|+|||||++.+..
T Consensus 382 ~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 382 QKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp CEEEEECCTTSSTTHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999886
No 484
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.32 E-value=9.7e-05 Score=49.81 Aligned_cols=21 Identities=14% Similarity=0.156 Sum_probs=19.0
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
-+.++|++|+|||++|+.+++
T Consensus 203 ~vLL~G~pGtGKT~la~~la~ 223 (758)
T 3pxi_A 203 NPVLIGEPGVGKTAIAEGLAQ 223 (758)
T ss_dssp EEEEESCTTTTTHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHH
Confidence 467899999999999999887
No 485
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.32 E-value=0.00014 Score=42.10 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=18.8
Q ss_pred eeEEcCCCCcHHHHHHHHhcC
Q 037564 5 KPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 5 i~i~G~~G~GKTtLa~~~~~~ 25 (93)
|.|+|.+|+|||+|..++.++
T Consensus 16 ivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCcCHHHHHHHHHhC
Confidence 788999999999999998764
No 486
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.31 E-value=0.00013 Score=41.44 Aligned_cols=22 Identities=9% Similarity=0.028 Sum_probs=19.6
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 487
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.31 E-value=0.00023 Score=47.18 Aligned_cols=50 Identities=14% Similarity=0.007 Sum_probs=31.1
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCCCCHHHHHHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSISYDFRMVLDDII 54 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ll~~il 54 (93)
++..|+|++|+|||+++..+.. .+...-...+.++.........+...+.
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~--~l~~~~~~~ilv~a~tn~A~~~l~~~l~ 245 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVY--HLARQGNGPVLVCAPSNIAVDQLTEKIH 245 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHH--HHHTSSSCCEEEEESSHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHH--HHHHcCCCeEEEEeCcHHHHHHHHHHHH
Confidence 5678999999999998776655 2222123355555555444455555554
No 488
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=97.31 E-value=0.00012 Score=45.89 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=20.3
Q ss_pred CCceeeEEcCCCCcHHHHHHHHhc
Q 037564 1 FSGCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 1 ~~~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
|.+++.+.|-||+||||+|..+..
T Consensus 1 M~~i~~~~gkGG~GKTt~a~~la~ 24 (374)
T 3igf_A 1 MALILTFLGKSGVARTKIAIAAAK 24 (374)
T ss_dssp -CEEEEEECSBHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHH
Confidence 467888999999999999988765
No 489
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.30 E-value=0.00014 Score=41.37 Aligned_cols=22 Identities=14% Similarity=-0.005 Sum_probs=19.3
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 490
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.30 E-value=0.00017 Score=40.94 Aligned_cols=22 Identities=9% Similarity=0.113 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|+++|.+|+|||||...+...
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998854
No 491
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.30 E-value=7.7e-05 Score=41.41 Aligned_cols=22 Identities=14% Similarity=0.051 Sum_probs=8.9
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999988764
No 492
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.30 E-value=0.00015 Score=41.28 Aligned_cols=22 Identities=14% Similarity=0.107 Sum_probs=19.3
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4789999999999999888764
No 493
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.30 E-value=0.00015 Score=41.20 Aligned_cols=22 Identities=14% Similarity=0.069 Sum_probs=19.4
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4789999999999999998764
No 494
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.29 E-value=0.00017 Score=43.32 Aligned_cols=21 Identities=10% Similarity=0.055 Sum_probs=19.4
Q ss_pred eeeEEcCCCCcHHHHHHHHhc
Q 037564 4 CKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+.++|++|+|||.+|..+++
T Consensus 106 ~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 588999999999999999887
No 495
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.29 E-value=9.5e-05 Score=48.54 Aligned_cols=22 Identities=9% Similarity=-0.068 Sum_probs=20.0
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
..++|+|++|+|||||++.+..
T Consensus 368 ~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 368 ETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp CEEEEECSTTSSHHHHHTTTTT
T ss_pred CEEEEECCCCChHHHHHHHHhc
Confidence 4789999999999999998876
No 496
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.29 E-value=0.00017 Score=42.48 Aligned_cols=23 Identities=9% Similarity=-0.031 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcC
Q 037564 3 GCKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
..|+|+|.+|+|||||...+...
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999764
No 497
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.28 E-value=0.00015 Score=41.01 Aligned_cols=22 Identities=14% Similarity=0.042 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998864
No 498
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=97.28 E-value=0.00016 Score=42.18 Aligned_cols=22 Identities=5% Similarity=-0.242 Sum_probs=20.3
Q ss_pred ceeeEEcCCCCcHHHHHHHHhc
Q 037564 3 GCKPILDSSSFDKTAFTADTYN 24 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~ 24 (93)
.+|+|.|+.|+||||+|+.+..
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~ 36 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAE 36 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHH
Confidence 4899999999999999998877
No 499
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.27 E-value=0.00016 Score=41.44 Aligned_cols=22 Identities=14% Similarity=0.030 Sum_probs=19.5
Q ss_pred eeeEEcCCCCcHHHHHHHHhcC
Q 037564 4 CKPILDSSSFDKTAFTADTYNN 25 (93)
Q Consensus 4 ~i~i~G~~G~GKTtLa~~~~~~ 25 (93)
-|.++|.+|+|||||...+...
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 500
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=97.27 E-value=0.0024 Score=42.26 Aligned_cols=47 Identities=13% Similarity=0.107 Sum_probs=32.8
Q ss_pred ceeeEEcCCCCcHHHHHHHHhcCcccccCCCeeEEEEeCCC-CCHHHHHHHH
Q 037564 3 GCKPILDSSSFDKTAFTADTYNNNHVKFYFDCHAWVRVSIS-YDFRMVLDDI 53 (93)
Q Consensus 3 ~~i~i~G~~G~GKTtLa~~~~~~~~~~~~f~~~~wv~~~~~-~~~~~ll~~i 53 (93)
.-++|.|.+|+|||+|+..+.+. .+-+.++++-+.+. ....++++.+
T Consensus 233 qr~~Ifgg~g~GKT~L~~~ia~~----~~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 233 GAAAVPGPFGAGKTVVQHQIAKW----SDVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH----SSCSEEEEEEEEECHHHHHHHHHHT
T ss_pred CEEeeecCCCccHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHHH
Confidence 45789999999999999998873 22356777777654 3344444443
Done!