Citrus Sinensis ID: 037565

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
MAALISLLAICITATLQFVFPFVESNNGCVTADLIHRDSPLSPLYSPSETNSERFHKAYLRSISRLNNHFNPKAASPEALQAPMVSSGGEYFVNISIGTPRVELIGIADTASDLTWIQCKPCYKCYKQNPPIFDPKESSTSKNITCQSESCLRLEKDRRCDTSRNTCQFYYSYADGSYTTGNVGTEVFVISSKTNPDQGTFPNIVYGCGNNNTGTFDE
cHHHHHHHHHHHHHHHHHHccEEEccccEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEcccccEEEEEEEccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEEEEEEEEccccccccccccEEEEcccccEEcccc
cHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccEccccccccEEEEEEEEccccccEEEEEEccccEEEEEEcccHHHcccccccccccccccccccccccHHHHHcccccccccccccEEEEEEEccccccccEEEEEEEEEccccccccEEEccEEEEccccccccccc
MAALISLLAICITATLQFVfpfvesnngcvtadlihrdsplsplyspsetnseRFHKAYLRSISRLnnhfnpkaaspealqapmvssggeyfvnisigtprvELIGIadtasdltwiqckpcykcykqnppifdpkesstsknitcqsesclrlekdrrcdtsrntcqfyysyadgsyttgnvGTEVFVISsktnpdqgtfpnivygcgnnntgtfde
MAALISLLAICITATLQFVFPFVESNNGCVTADLIHRDSPLSPLYSPSETNSERFHKAYLRSISRLNNHFNPKAASPEALQAPMVSSGGEYFVNISIGTPRVELIGIADTASDLTWIQCKPCYKCYKQNPPIfdpkesstsknitcqsesclrlekdrrcdtsrnTCQFYYSYADGSYTTGNVGTEVFVISSKtnpdqgtfpnivygcgnnntgtfde
MAALISLLAICITATLQFVFPFVESNNGCVTADLIHRDSPLSPLYSPSETNSERFHKAYLRSISRLNNHFNPKAASPEALQAPMVSSGGEYFVNISIGTPRVELIGIADTASDLTWIQCKPCYKCYKQNPPIFDPKESSTSKNITCQSESCLRLEKDRRCDTSRNTCQFYYSYADGSYTTGNVGTEVFVISSKTNPDQGTFPNIVYGCGNNNTGTFDE
**ALISLLAICITATLQFVFPFVESNNGCVTADLIHR**************************************************GGEYFVNISIGTPRVELIGIADTASDLTWIQCKPCYKCYKQNPPI******************CLRLEKDRRCDTSRNTCQFYYSYADGSYTTGNVGTEVFVISSKTNPDQGTFPNIVYGCGN********
***LISLLAICITATLQFVFPF*******VTADLIHRDS*********************************************VSSGGEYFVNISIGTPRVELIGIADTASDLTWIQCKPCYKCYKQNPPIFDP**SS***NITCQSESCL*************TCQFYYSYADGSYTTGNVGTEVFVISSKTNPDQGTFPNIVYGCGNNNTGT***
MAALISLLAICITATLQFVFPFVESNNGCVTADLIHRDSPLSPLYSPSETNSERFHKAYLRSISRLNNHFNPKAASPEALQAPMVSSGGEYFVNISIGTPRVELIGIADTASDLTWIQCKPCYKCYKQNPPIFDPK**********QSESCLRLEKDRRCDTSRNTCQFYYSYADGSYTTGNVGTEVFVISSKTNPDQGTFPNIVYGCGNNNTGTFDE
MAALISLLAICITATLQFVFPFVESNNGCVTADLIHRDSPLSPLYSPSETNSERFHKAYLRSISRLNN**********ALQAPMVSSGGEYFVNISIGTPRVELIGIADTASDLTWIQCKPCYKCYKQNPPIFDPKESSTSKNITCQSESCLRLEKDRRCDTSRNTCQFYYSYADGSYTTGNVGTEVFVISSKTNPDQGTFPNIVYGCGNNNT*TF**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MAALISLLAICITATLQFVFPFVESNNGCVTADLIHRDSPLSPLYSPSETNSERFHKAYLRSISRLNNHFNPKAASPEALQAPMVSSGGEYFVNISIGTPRVELIGIADTASDLTWIQCKPCYKCYKQNPPIFDPKESSTSKNITCQSESCLRLEKDRRCDTSRNTCQFYYSYADGSYTTGNVGTEVFVISSKTNPDQGTFPNIVYGCGNNNTGTFDE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query218 2.2.26 [Sep-21-2011]
Q3EBM5 447 Probable aspartic proteas no no 0.848 0.413 0.492 3e-48
Q6XBF8 437 Aspartic proteinase CDR1 no no 0.844 0.421 0.497 6e-47
Q766C3 437 Aspartic proteinase nepen N/A no 0.683 0.340 0.388 2e-26
Q766C2 438 Aspartic proteinase nepen N/A no 0.711 0.353 0.369 2e-26
Q9LS40 500 Protein ASPARTIC PROTEASE no no 0.600 0.262 0.412 1e-24
Q9LHE3 470 Protein ASPARTIC PROTEASE no no 0.839 0.389 0.296 8e-22
Q9S9K4 475 Aspartic proteinase-like no no 0.596 0.273 0.342 8e-13
P69477178 Aspartic proteinase nepen N/A no 0.344 0.421 0.353 2e-08
Q9LZL3 453 Aspartic proteinase PCS1 no no 0.449 0.216 0.318 2e-07
P69476164 Aspartic proteinase nepen N/A no 0.454 0.603 0.288 3e-07
>sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 Back     alignment and function desciption
 Score =  191 bits (485), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 93/189 (49%), Positives = 132/189 (69%), Gaps = 4/189 (2%)

Query: 31  TADLIHRDSPLSPLYSPSETNSERFHKAYLRSISRLNNHFNPKAASPEALQAPMVSSGGE 90
           + +LIHRDSPLSP+Y+P  T ++R + A+LRS+SR +  FN + +  + LQ+ ++ + GE
Sbjct: 27  SVELIHRDSPLSPIYNPQITVTDRLNAAFLRSVSR-SRRFNHQLSQTD-LQSGLIGADGE 84

Query: 91  YFVNISIGTPRVELIGIADTASDLTWIQCKPCYKCYKQNPPIFDPKESSTSKNITCQSES 150
           +F++I+IGTP +++  IADT SDLTW+QCKPC +CYK+N PIFD K+SST K+  C S +
Sbjct: 85  FFMSITIGTPPIKVFAIADTGSDLTWVQCKPCQQCYKENGPIFDKKKSSTYKSEPCDSRN 144

Query: 151 CLRLEK-DRRCDTSRNTCQFYYSYADGSYTTGNVGTEVFVISSKTNPDQGTFPNIVYGCG 209
           C  L   +R CD S N C++ YSY D S++ G+V TE   I S +     +FP  V+GCG
Sbjct: 145 CQALSSTERGCDESNNICKYRYSYGDQSFSKGDVATETVSIDSASGSPV-SFPGTVFGCG 203

Query: 210 NNNTGTFDE 218
            NN GTFDE
Sbjct: 204 YNNGGTFDE 212

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: -EC: .EC: -
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function description
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function description
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 Back     alignment and function description
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function description
>sp|P69477|NEP2_NEPDI Aspartic proteinase nepenthesin-2 (Fragments) OS=Nepenthes distillatoria PE=1 SV=1 Back     alignment and function description
>sp|Q9LZL3|PCS1L_ARATH Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1 Back     alignment and function description
>sp|P69476|NEP1_NEPDI Aspartic proteinase nepenthesin-1 (Fragments) OS=Nepenthes distillatoria PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query218
15222357 445 aspartyl protease-like protein [Arabidop 0.926 0.453 0.485 1e-47
296085498 542 unnamed protein product [Vitis vinifera] 0.931 0.374 0.454 1e-47
225427550 439 PREDICTED: probable aspartic protease At 0.931 0.462 0.454 2e-47
225427554 447 PREDICTED: probable aspartic protease At 0.871 0.425 0.497 2e-47
225427558 444 PREDICTED: probable aspartic protease At 0.848 0.416 0.510 2e-47
255553149 449 Aspartic proteinase nepenthesin-2 precur 0.995 0.483 0.453 4e-47
297823357 447 aspartyl protease family protein [Arabid 0.839 0.409 0.502 5e-47
30686482 447 aspartyl protease-like protein [Arabidop 0.848 0.413 0.492 2e-46
224074591 443 predicted protein [Populus trichocarpa] 0.853 0.419 0.502 3e-46
317106730 445 JHL06P13.6 [Jatropha curcas] 0.862 0.422 0.477 1e-45
>gi|15222357|ref|NP_174430.1| aspartyl protease-like protein [Arabidopsis thaliana] gi|12322538|gb|AAG51267.1|AC027135_8 chloroplast nucleoid DNA binding protein, putative [Arabidopsis thaliana] gi|67633408|gb|AAY78629.1| aspartyl protease family protein [Arabidopsis thaliana] gi|332193236|gb|AEE31357.1| aspartyl protease-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 104/214 (48%), Positives = 140/214 (65%), Gaps = 12/214 (5%)

Query: 6   SLLAICITATLQFVFPFVESNNGCVTADLIHRDSPLSPLYSPSETNSERFHKAYLRSISR 65
           SLLAI       F      +N   +T +LIHRDSP SPLY+P  T S+R + A+LRSISR
Sbjct: 10  SLLAISF-----FFASNSSANRENLTVELIHRDSPHSPLYNPHHTVSDRLNAAFLRSISR 64

Query: 66  LNNHFNPKAASPEALQAPMVSSGGEYFVNISIGTPRVELIGIADTASDLTWIQCKPCYKC 125
            +  F  K      LQ+ ++S+GGEYF++ISIGTP  ++  IADT SDLTW+QCKPC +C
Sbjct: 65  -SRRFTTKTD----LQSGLISNGGEYFMSISIGTPPSKVFAIADTGSDLTWVQCKPCQQC 119

Query: 126 YKQNPPIFDPKESSTSKNITCQSESCLRL-EKDRRCDTSRNTCQFYYSYADGSYTTGNVG 184
           YKQN P+FD K+SST K  +C S++C  L E +  CD S++ C++ YSY D S+T G+V 
Sbjct: 120 YKQNSPLFDKKKSSTYKTESCDSKTCQALSEHEEGCDESKDICKYRYSYGDNSFTKGDVA 179

Query: 185 TEVFVISSKTNPDQGTFPNIVYGCGNNNTGTFDE 218
           TE  +    ++    +FP  V+GCG NN GTF+E
Sbjct: 180 TET-ISIDSSSGSSVSFPGTVFGCGYNNGGTFEE 212

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296085498|emb|CBI29230.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225427550|ref|XP_002266461.1| PREDICTED: probable aspartic protease At2g35615 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225427554|ref|XP_002266533.1| PREDICTED: probable aspartic protease At2g35615-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225427558|ref|XP_002266614.1| PREDICTED: probable aspartic protease At2g35615-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255553149|ref|XP_002517617.1| Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis] gi|223543249|gb|EEF44781.1| Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297823357|ref|XP_002879561.1| aspartyl protease family protein [Arabidopsis lyrata subsp. lyrata] gi|297325400|gb|EFH55820.1| aspartyl protease family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|30686482|ref|NP_850251.1| aspartyl protease-like protein [Arabidopsis thaliana] gi|122215044|sp|Q3EBM5.1|ASPR1_ARATH RecName: Full=Probable aspartic protease At2g35615; Flags: Precursor gi|330254036|gb|AEC09130.1| aspartyl protease-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224074591|ref|XP_002304395.1| predicted protein [Populus trichocarpa] gi|222841827|gb|EEE79374.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|317106730|dbj|BAJ53226.1| JHL06P13.6 [Jatropha curcas] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query218
TAIR|locus:2206184 445 AT1G31450 [Arabidopsis thalian 0.926 0.453 0.495 3.6e-50
TAIR|locus:2145954 437 CDR1 "CONSTITUTIVE DISEASE RES 0.977 0.487 0.466 8.5e-49
TAIR|locus:504955954 447 AT2G35615 [Arabidopsis thalian 0.848 0.413 0.492 7.7e-48
TAIR|locus:2010786 431 AT1G64830 [Arabidopsis thalian 0.949 0.480 0.454 9.1e-45
TAIR|locus:2035297 485 AT1G01300 [Arabidopsis thalian 0.844 0.379 0.359 2e-27
TAIR|locus:2077700 535 AT3G59080 "AT3G59080" [Arabido 0.628 0.256 0.398 9.8e-26
TAIR|locus:2095042 500 ASPG1 "ASPARTIC PROTEASE IN GU 0.600 0.262 0.405 2e-25
TAIR|locus:2045615 527 AT2G42980 [Arabidopsis thalian 0.628 0.259 0.370 2e-24
TAIR|locus:2056916 461 AT2G03200 [Arabidopsis thalian 0.591 0.279 0.392 6.5e-24
TAIR|locus:2076745 483 AT3G61820 [Arabidopsis thalian 0.577 0.260 0.395 8.1e-24
TAIR|locus:2206184 AT1G31450 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 104/210 (49%), Positives = 138/210 (65%)

Query:    11 CITATLQFVFPFVES-NNGCVTADLIHRDSPLSPLYSPSETNSERFHKAYLRSISRLNNH 69
             C    + F F    S N   +T +LIHRDSP SPLY+P  T S+R + A+LRSISR +  
Sbjct:     9 CSLLAISFFFASNSSANRENLTVELIHRDSPHSPLYNPHHTVSDRLNAAFLRSISR-SRR 67

Query:    70 FNPKAASPEALQAPMVSSGGEYFVNISIGTPRVELIGIADTASDLTWIQCKPCYKCYKQN 129
             F  K      LQ+ ++S+GGEYF++ISIGTP  ++  IADT SDLTW+QCKPC +CYKQN
Sbjct:    68 FTTKTD----LQSGLISNGGEYFMSISIGTPPSKVFAIADTGSDLTWVQCKPCQQCYKQN 123

Query:   130 PPIFDPKESSTSKNITCQSESCLRL-EKDRRCDTSRNTCQFYYSYADGSYTTGNVGTEVF 188
              P+FD K+SST K  +C S++C  L E +  CD S++ C++ YSY D S+T G+V TE  
Sbjct:   124 SPLFDKKKSSTYKTESCDSKTCQALSEHEEGCDESKDICKYRYSYGDNSFTKGDVATETI 183

Query:   189 VISSKTNPDQGTFPNIVYGCGNNNTGTFDE 218
              I S +     +FP  V+GCG NN GTF+E
Sbjct:   184 SIDSSSGSSV-SFPGTVFGCGYNNGGTFEE 212
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
TAIR|locus:2145954 CDR1 "CONSTITUTIVE DISEASE RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955954 AT2G35615 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010786 AT1G64830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035297 AT1G01300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077700 AT3G59080 "AT3G59080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095042 ASPG1 "ASPARTIC PROTEASE IN GUARD CELL 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2045615 AT2G42980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056916 AT2G03200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076745 AT3G61820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query218
PLN03146 431 PLN03146, PLN03146, aspartyl protease family prote 1e-90
cd05476 265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 2e-20
cd05471 283 cd05471, pepsin_like, Pepsin-like aspartic proteas 3e-20
cd05472 299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 7e-19
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 2e-10
cd06096 326 cd06096, Plasmepsin_5, Plasmepsins are a class of 8e-09
pfam00026 316 pfam00026, Asp, Eukaryotic aspartyl protease 7e-08
cd05475 273 cd05475, nucellin_like, Nucellins, plant aspartic 3e-06
cd06097 278 cd06097, Aspergillopepsin_like, Aspergillopepsin_l 4e-05
PTZ00165 482 PTZ00165, PTZ00165, aspartyl protease; Provisional 3e-04
cd05478 317 cd05478, pepsin_A, Pepsin A, aspartic protease pro 0.001
cd05477 318 cd05477, gastricsin, Gastricsins, asparate proteas 0.003
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information 
 Score =  272 bits (698), Expect = 1e-90
 Identities = 112/213 (52%), Positives = 140/213 (65%), Gaps = 5/213 (2%)

Query: 6   SLLAICITATLQFVFPFVESNNGCVTADLIHRDSPLSPLYSPSETNSERFHKAYLRSISR 65
            LLA+C+ +  +      E+  G  T DLIHRDSP SP Y+PSET S+R   A+ RSISR
Sbjct: 3   VLLALCLFSFSELSA--AEAPKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISR 60

Query: 66  LNNHFNPKAASPEALQAPMVSSGGEYFVNISIGTPRVELIGIADTASDLTWIQCKPCYKC 125
           +N HF P  ASP   Q+ ++S+GGEY +NISIGTP V ++ IADT SDL W QCKPC  C
Sbjct: 61  VN-HFRPTDASPNDPQSDLISNGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDC 119

Query: 126 YKQNPPIFDPKESSTSKNITCQSESCLRLEKDRRCDTSRNTCQFYYSYADGSYTTGNVGT 185
           YKQ  P+FDPK+SST K+++C S  C  L     C    NTC + YSY DGS+T GN+  
Sbjct: 120 YKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDE-NTCTYSYSYGDGSFTKGNLAV 178

Query: 186 EVFVISSKTNPDQGTFPNIVYGCGNNNTGTFDE 218
           E   I S T+    +FP IV+GCG+NN GTFDE
Sbjct: 179 ETLTIGS-TSGRPVSFPGIVFGCGHNNGGTFDE 210

Length = 431
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional Back     alignment and domain information
>gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 218
PLN03146 431 aspartyl protease family protein; Provisional 100.0
KOG1339 398 consensus Aspartyl protease [Posttranslational mod 99.95
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 99.94
cd06096 326 Plasmepsin_5 Plasmepsins are a class of aspartic p 99.94
PTZ00165 482 aspartyl protease; Provisional 99.92
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.91
cd05490 325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 99.9
cd05478 317 pepsin_A Pepsin A, aspartic protease produced in g 99.89
cd05477 318 gastricsin Gastricsins, asparate proteases produce 99.88
cd06097 278 Aspergillopepsin_like Aspergillopepsin_like, aspar 99.87
cd06098 317 phytepsin Phytepsin, a plant homolog of mammalian 99.87
cd05485 329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 99.87
cd05486 316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 99.86
cd05488 320 Proteinase_A_fungi Fungal Proteinase A , aspartic 99.86
PTZ00147 453 plasmepsin-1; Provisional 99.86
PTZ00013 450 plasmepsin 4 (PM4); Provisional 99.84
cd05487 326 renin_like Renin stimulates production of angioten 99.83
cd05475 273 nucellin_like Nucellins, plant aspartic proteases 99.83
cd05473 364 beta_secretase_like Beta-secretase, aspartic-acid 99.8
cd05471 283 pepsin_like Pepsin-like aspartic proteases, biloba 99.79
cd05472 299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 99.78
cd05489 362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 99.75
PF00026 317 Asp: Eukaryotic aspartyl protease The Prosite entr 99.71
cd05476 265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 99.67
cd05474 295 SAP_like SAPs, pepsin-like proteinases secreted fr 99.52
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 97.05
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 92.82
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 91.46
PF1365090 Asp_protease_2: Aspartyl protease 88.0
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 86.94
PF00077100 RVP: Retroviral aspartyl protease The Prosite entr 80.56
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=7.6e-42  Score=309.97  Aligned_cols=205  Identities=51%  Similarity=0.929  Sum_probs=172.7

Q ss_pred             HHHHHHHHhccccceecCCceeEEEEecCCCCCCCCCCCCCCchHHHHHHHhhhhhhhccccCCCcCCCCCcccceecCC
Q 037565            9 AICITATLQFVFPFVESNNGCVTADLIHRDSPLSPLYSPSETNSERFHKAYLRSISRLNNHFNPKAASPEALQAPMVSSG   88 (218)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~l~L~h~~s~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~   88 (218)
                      ++++++.-++.++..+++.++++++|+|++++++|++.++....++++++++++.+|.+ ++.++......+..++...+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~~~~~~~~~~   82 (431)
T PLN03146          4 LLALCLFSFSELSAAEAPKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVN-HFRPTDASPNDPQSDLISNG   82 (431)
T ss_pred             hHHHHHHHHhhhhhccccCCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHH-HHhhccccCCccccCcccCC
Confidence            44455544565666677888999999999999999988877778999999999999988 77543222234455566778


Q ss_pred             ceEEEEEEeCCCceeEEEEEeCCCCceeEecCCCCCCCCCCCCccCCCCCCcceeccCCCccccCCCCCCCCCCCCCcce
Q 037565           89 GEYFVNISIGTPRVELIGIADTASDLTWIQCKPCYKCYKQNPPIFDPKESSTSKNITCQSESCLRLEKDRRCDTSRNTCQ  168 (218)
Q Consensus        89 ~~Y~~~i~iGtP~q~~~~~~DTGS~~~Wv~c~~C~~C~~~~~~~f~p~~Sst~~~~~C~s~~C~~~~~~~~C~~~~~~c~  168 (218)
                      ++|+++|.||||||++.|++||||+++||||.+|..|+.|.++.|||++|+||+.++|.++.|..++....|... +.|.
T Consensus        83 ~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~-~~c~  161 (431)
T PLN03146         83 GEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDE-NTCT  161 (431)
T ss_pred             ccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCC-CCCe
Confidence            999999999999999999999999999999999999998889999999999999999999999887766567654 4699


Q ss_pred             eEEEcCCCceEEEEEEEEEEEecCCCCCCCcccCCeEEEeEEcCCCCC
Q 037565          169 FYYSYADGSYTTGNVGTEVFVISSKTNPDQGTFPNIVYGCGNNNTGTF  216 (218)
Q Consensus       169 ~~~~Y~dgs~~~G~l~~D~~~~~~~~~~~~~~~~~~~FGc~~~~~g~f  216 (218)
                      |.+.|+||+.+.|++++|+|+|++..+. .+.++++.|||++.+.|.|
T Consensus       162 y~i~Ygdgs~~~G~l~~Dtltlg~~~~~-~~~v~~~~FGc~~~~~g~f  208 (431)
T PLN03146        162 YSYSYGDGSFTKGNLAVETLTIGSTSGR-PVSFPGIVFGCGHNNGGTF  208 (431)
T ss_pred             eEEEeCCCCceeeEEEEEEEEeccCCCC-cceeCCEEEeCCCCCCCCc
Confidence            9999999998889999999999875332 2578999999999887766

>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query218
3aup_A 403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 2e-35
1t6e_X 381 Xylanase inhibitor; two beta-barrel domain structu 1e-30
3vla_A 413 EDGP; extracellular, inhibitor, plant protein; HET 4e-29
3fv3_A 339 SAPP1P-secreted aspartic protease 1; secreted aspa 1e-11
3c9x_A 329 Trichoderma reesei aspartic protease; aspartic pro 8e-11
2qzx_A 342 Candidapepsin-5; aspartic proteinase, aspartyl pro 9e-11
3pvk_A 342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 1e-10
1j71_A 334 Candidapepsin, aspartic proteinase; candida tropic 1e-10
1oew_A 329 Endothiapepsin; hydrolase, aspartic proteinase mec 1e-09
2apr_A 325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 8e-09
1ibq_A 325 Aspergillopepsin; aspartic proteinase, hydrolase; 1e-08
1mpp_A 361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 1e-08
1bxo_A 323 Protein (penicillopepsin); hydrolase, phosphonate 2e-08
3qvc_A 451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 3e-08
2bju_A 453 Plasmepsin II; aspartic proteinase, drug design, m 5e-08
2ewy_A 383 Beta-secretase 2; BACE2, aspartic protease, hydrol 6e-08
1izd_A 323 Aspartic proteinase; sugar binding, acid protease, 9e-08
1qdm_A 478 Prophytepsin; aspartic proteinases, saposin-like d 9e-08
1b5f_A 239 Protein (cardosin A); hydrolase, aspartic proteina 1e-07
3lpj_A 455 Beta-secretase 1; alzheimer'S, aspartyl protease, 1e-07
1tzs_A 351 Cathepsin E; hydrolase, aspartic protease, activat 2e-07
3cms_A 323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 2e-07
1dpj_A 329 Proteinase A; proteinase A, hydrolase-hydrolase in 2e-07
2qp8_A 395 Beta-secretase 1; BACE1, protease, alternative spl 3e-07
1am5_A 324 Pepsin, acid proteinase; aspartyl protease, hydrol 3e-07
1miq_A 375 Plasmepsin; aspartic proteinase zymogen, domain op 5e-07
1htr_B 329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 7e-07
3psg_A 370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 1e-06
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 5e-06
3k1w_A 341 Renin; protease, alternative splicing, aspartyl pr 7e-06
1yg9_A 330 Aspartic protease BLA G 2; allegren, hydrolase, al 6e-05
2x0b_A 383 Renin; hydrolase-hormone complex, hydrolase hormon 6e-05
1wkr_A 340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 6e-05
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
 Score =  128 bits (322), Expect = 2e-35
 Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 13/151 (8%)

Query: 74  AASPEALQAPMVS--SGGEYFVNISIGTPRVELIGIADTASDLTWIQCKPCYKCYKQNPP 131
                 +  P+ +  S G ++ N+   TP +++  + D   +  W+ C+  Y       P
Sbjct: 4   TKPINLVVLPVQNDGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAP 63

Query: 132 IFDPKESSTSKNITCQSESCLRLEKDRRCDTSRNTCQFY-YSYADGSYTTGNVGTEVFVI 190
                + S +    C S          R    +NTC     +        G +G +V  I
Sbjct: 64  FCHSTQCSRANTHQCLSCPA-----ASRPGCHKNTCGLMSTNPITQQTGLGELGEDVLAI 118

Query: 191 SS-----KTNPDQGTFPNIVYGCGNNNTGTF 216
            +     +      T P  ++ C  +     
Sbjct: 119 HATQGSTQQLGPLVTVPQFLFSCAPSFLVQK 149
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query218
3psg_A 370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 99.94
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.93
2x0b_A 383 Renin; hydrolase-hormone complex, hydrolase hormon 99.93
2apr_A 325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 99.92
3c9x_A 329 Trichoderma reesei aspartic protease; aspartic pro 99.92
3vla_A 413 EDGP; extracellular, inhibitor, plant protein; HET 99.91
1oew_A 329 Endothiapepsin; hydrolase, aspartic proteinase mec 99.91
2bju_A 453 Plasmepsin II; aspartic proteinase, drug design, m 99.9
1qdm_A 478 Prophytepsin; aspartic proteinases, saposin-like d 99.9
1b5f_A 239 Protein (cardosin A); hydrolase, aspartic proteina 99.9
3cms_A 323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 99.9
4aa9_A 320 Chymosin; hydrolase, aspartic peptidase, rennet; H 99.9
1am5_A 324 Pepsin, acid proteinase; aspartyl protease, hydrol 99.89
1tzs_A 351 Cathepsin E; hydrolase, aspartic protease, activat 99.89
3fv3_A 339 SAPP1P-secreted aspartic protease 1; secreted aspa 99.89
1mpp_A 361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 99.89
1htr_B 329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 99.89
1dpj_A 329 Proteinase A; proteinase A, hydrolase-hydrolase in 99.89
1j71_A 334 Candidapepsin, aspartic proteinase; candida tropic 99.89
2qzx_A 342 Candidapepsin-5; aspartic proteinase, aspartyl pro 99.89
3k1w_A 341 Renin; protease, alternative splicing, aspartyl pr 99.89
3aup_A 403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 99.89
3pvk_A 342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 99.88
3qvc_A 451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 99.88
1miq_A 375 Plasmepsin; aspartic proteinase zymogen, domain op 99.87
1izd_A 323 Aspartic proteinase; sugar binding, acid protease, 99.86
1ibq_A 325 Aspergillopepsin; aspartic proteinase, hydrolase; 99.86
1bxo_A 323 Protein (penicillopepsin); hydrolase, phosphonate 99.85
1yg9_A 330 Aspartic protease BLA G 2; allegren, hydrolase, al 99.84
2ewy_A 383 Beta-secretase 2; BACE2, aspartic protease, hydrol 99.84
3lpj_A 455 Beta-secretase 1; alzheimer'S, aspartyl protease, 99.83
2qp8_A 395 Beta-secretase 1; BACE1, protease, alternative spl 99.83
1wkr_A 340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 99.83
3vf3_A 402 Beta-secretase 1; structure-based drug design, hyd 99.82
1t6e_X 381 Xylanase inhibitor; two beta-barrel domain structu 99.74
1fmb_A104 EIAV protease; hydrolase (acid proteinase), RNA-di 85.11
2hs1_A99 HIV-1 protease; ultra-high resolution active site 84.09
3liy_A116 Protease; hydrolase, hydrolase-hydrolase inhibitor 83.88
3ec0_A99 Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1 80.3
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
Probab=99.94  E-value=7.3e-27  Score=206.89  Aligned_cols=152  Identities=23%  Similarity=0.333  Sum_probs=114.8

Q ss_pred             eEEEEecCCCCCCCCCCCCCCchHHHHHHHhhhhhhhccccCCCcCCCCCcccceecCCceEEEEEEeCCCceeEEEEEe
Q 037565           30 VTADLIHRDSPLSPLYSPSETNSERFHKAYLRSISRLNNHFNPKAASPEALQAPMVSSGGEYFVNISIGTPRVELIGIAD  109 (218)
Q Consensus        30 ~~l~L~h~~s~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~i~iGtP~q~~~~~~D  109 (218)
                      +|+||++.++.|..+.+.+.. .++++.    ...|...............++..++.+.+|+++|.||||||+|.|++|
T Consensus         2 ~~ipl~~~~s~r~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~n~~d~~Y~~~i~iGTPpQ~~~v~~D   76 (370)
T 3psg_A            2 VKVPLVRKKSLRQNLIKDGKL-KDFLKT----HKHNPASKYFPEAAALIGDEPLENYLDTEYFGTIGIGTPAQDFTVIFD   76 (370)
T ss_dssp             EEEEEEECCCHHHHHHHTTCH-HHHHHH----CCCCGGGGTCTTSCCSSCCCTTGGGTTCCEEEEEEETTTTEEEEEEEE
T ss_pred             EEEEeEEcCcHHHHHHhcCcH-HHHHhh----hhcchhhhhccccccccceecceeccCCEEEEEEEEcCCCCEEEEEEe
Confidence            589999999987766555542 233332    111111011110000123345557899999999999999999999999


Q ss_pred             CCCCceeEecCCCCCCCCCCCCccCCCCCCcceeccCCCccccCCCCCCCCCCCCCcceeEEEcCCCceEEEEEEEEEEE
Q 037565          110 TASDLTWIQCKPCYKCYKQNPPIFDPKESSTSKNITCQSESCLRLEKDRRCDTSRNTCQFYYSYADGSYTTGNVGTEVFV  189 (218)
Q Consensus       110 TGS~~~Wv~c~~C~~C~~~~~~~f~p~~Sst~~~~~C~s~~C~~~~~~~~C~~~~~~c~~~~~Y~dgs~~~G~l~~D~~~  189 (218)
                      |||+++||+|..|..|.-+.++.|||++|+||+..                     .|.|.+.|++|+. +|.+++|+|+
T Consensus        77 TGSs~lWV~s~~C~~~~C~~~~~y~~~~SsT~~~~---------------------~~~~~i~Yg~Gs~-~G~~~~Dtv~  134 (370)
T 3psg_A           77 TGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEAT---------------------SQELSITYGTGSM-TGILGYDTVQ  134 (370)
T ss_dssp             TTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEEE---------------------EEEEEEESSSCEE-EEEEEEEEEE
T ss_pred             CCCCccEEECCCCCCcccCCCCCCCCccCcCcEEC---------------------CcEEEEEeCCceE-EEEEEEEEEe
Confidence            99999999999997422267889999999999984                     6899999999984 6999999999


Q ss_pred             ecCCCCCCCcccCCeEEEeEEcCCC
Q 037565          190 ISSKTNPDQGTFPNIVYGCGNNNTG  214 (218)
Q Consensus       190 ~~~~~~~~~~~~~~~~FGc~~~~~g  214 (218)
                      |++      +.++++.|||++.+.+
T Consensus       135 ig~------~~v~~~~Fg~a~~~~~  153 (370)
T 3psg_A          135 VGG------ISDTNQIFGLSETEPG  153 (370)
T ss_dssp             ETT------EEEEEEEEEEECSCCC
T ss_pred             eCC------cccCCeEEEEEEeecc
Confidence            987      6899999999998765
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A* Back     alignment and structure
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ... Back     alignment and structure
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A* Back     alignment and structure
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 218
d1t6ex_ 381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 4e-20
d1oewa_ 330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 4e-16
d1dpja_ 329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 6e-16
d2qp8a1 387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 8e-16
d3cmsa_ 323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 2e-15
d2apra_ 325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 2e-15
g1htr.1 372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 2e-15
d2bjua1 329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 3e-15
d1am5a_ 324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 9e-15
d1bxoa_ 323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 1e-14
g1lya.1 338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 1e-14
d1miqa_ 373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 3e-14
d1eaga_ 342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 6e-14
d1izea_ 323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 9e-14
d1j71a_ 334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 1e-13
g1b5f.1 326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 1e-13
d1qdma2 337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 2e-13
d1mppa_ 357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 2e-13
d3psga_ 370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 2e-12
d1hrna_ 337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 2e-12
d1wkra_ 340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 6e-11
d1smra_ 335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 1e-10
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score = 85.1 bits (209), Expect = 4e-20
 Identities = 18/134 (13%), Positives = 36/134 (26%), Gaps = 15/134 (11%)

Query: 86  SSGGEYFVNISIGTPRVELIGIADTASDLTWIQCKPCYKCYKQNPPIFDPKESSTSKNIT 145
            +   Y +    G        + D A  L W  C       +          ++      
Sbjct: 11  PATSLYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQPPAEIPCSSPTCLLANAYPAPG 65

Query: 146 CQSESCLRLEKDRRCDTSRNTC-QFYYSYADGSYTTGNVGTEVFVISSKTNPDQGT--FP 202
           C + SC         D     C  + Y+   G+   G++    FV ++       +    
Sbjct: 66  CPAPSC-------GSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNV 118

Query: 203 NIVYGCGNNNTGTF 216
            ++  C  +     
Sbjct: 119 GVLAACAPSKLLAS 132
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query218
d3psga_ 370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 99.94
g1htr.1 372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 99.92
d1am5a_ 324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 99.88
d1oewa_ 330 Endothiapepsin {Chestnut blight fungus (Endothia p 99.88
d1miqa_ 373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 99.88
d1dpja_ 329 Acid protease {Baker's yeast (Saccharomyces cerevi 99.87
d1qdma2 337 Plant acid proteinase, phytepsin {Barley (Hordeum 99.86
d2apra_ 325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 99.86
g1lya.1 338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 99.85
d2bjua1 329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 99.85
d3cmsa_ 323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 99.85
d1smra_ 335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 99.84
d1j71a_ 334 Acid protease {Yeast (Candida tropicalis) [TaxId: 99.82
d1mppa_ 357 Pepsin {Mucor pusillus [TaxId: 4840]} 99.82
d1eaga_ 342 Acid protease {Yeast (Candida albicans) [TaxId: 54 99.82
d1hrna_ 337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 99.81
g1b5f.1 326 Plant acid proteinase, phytepsin {Cynara carduncul 99.8
d1bxoa_ 323 Acid protease {Fungus (Penicillium janthinellum), 99.78
d2qp8a1 387 beta-secretase (memapsin) {Human (Homo sapiens) [T 99.78
d1izea_ 323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 99.76
d1wkra_ 340 Acid protease {Irpex lacteus (Polyporus tulipifera 99.76
d1t6ex_ 381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 99.63
d4fiva_113 Feline immunodeficiency virus (FIV) protease {Feli 81.57
d2fmba_104 EIAV protease {Equine infectious anemia virus [Tax 80.86
d2nmza199 Human immunodeficiency virus type 1 protease {Huma 80.41
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.94  E-value=2.8e-27  Score=206.57  Aligned_cols=106  Identities=26%  Similarity=0.409  Sum_probs=96.3

Q ss_pred             cceecCCceEEEEEEeCCCceeEEEEEeCCCCceeEecCCCCCCCCCCCCccCCCCCCcceeccCCCccccCCCCCCCCC
Q 037565           82 APMVSSGGEYFVNISIGTPRVELIGIADTASDLTWIQCKPCYKCYKQNPPIFDPKESSTSKNITCQSESCLRLEKDRRCD  161 (218)
Q Consensus        82 ~~~~~~~~~Y~~~i~iGtP~q~~~~~~DTGS~~~Wv~c~~C~~C~~~~~~~f~p~~Sst~~~~~C~s~~C~~~~~~~~C~  161 (218)
                      +..++.+.+|+++|.||||||++.|++||||+++||+|.+|..|..+.++.|||++|+||+..                 
T Consensus        49 ~l~n~~d~~Y~~~i~iGtP~Q~~~vi~DTGSs~~Wv~~~~C~~~~~~~~~~yd~~~Sst~~~~-----------------  111 (370)
T d3psga_          49 PLENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEAT-----------------  111 (370)
T ss_dssp             TTGGGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEEE-----------------
T ss_pred             ccccccCCEEEEEEEEcCCCeEEEEEEeCCCCCeEEECccCCCcccccccccCCCcccccccC-----------------
Confidence            344678899999999999999999999999999999999999988788999999999999884                 


Q ss_pred             CCCCcceeEEEcCCCceEEEEEEEEEEEecCCCCCCCcccCCeEEEeEEcCCCC
Q 037565          162 TSRNTCQFYYSYADGSYTTGNVGTEVFVISSKTNPDQGTFPNIVYGCGNNNTGT  215 (218)
Q Consensus       162 ~~~~~c~~~~~Y~dgs~~~G~l~~D~~~~~~~~~~~~~~~~~~~FGc~~~~~g~  215 (218)
                          .|.|.+.|++|+.. |.++.|++.+++      +.++++.|||+....+.
T Consensus       112 ----~~~~~~~Yg~Gs~~-G~~~~d~~~~~~------~~~~~~~f~~~~~~~~~  154 (370)
T d3psga_         112 ----SQELSITYGTGSMT-GILGYDTVQVGG------ISDTNQIFGLSETEPGS  154 (370)
T ss_dssp             ----EEEEEEESSSCEEE-EEEEEEEEEETT------EEEEEEEEEEECSCCCG
T ss_pred             ----CCcEEEEeCCceEE-EEEEEEEEeeec------eeeeeeEEEEEeeccCc
Confidence                68999999999865 999999999987      68899999999887654
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d4fiva_ b.50.1.1 (A:) Feline immunodeficiency virus (FIV) protease {Feline immunodeficiency virus [TaxId: 11673]} Back     information, alignment and structure
>d2fmba_ b.50.1.1 (A:) EIAV protease {Equine infectious anemia virus [TaxId: 11665]} Back     information, alignment and structure
>d2nmza1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]} Back     information, alignment and structure