BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037566
(360 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V6F|A Chain A, Structure Of Progesterone 5beta-Reductase From Digitalis
Lanata
pdb|2V6G|A Chain A, Structure Of Progesterone 5beta-reductase From Digitalis
Lanata In Complex With Nadp
Length = 364
Score = 254 bits (650), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 140/363 (38%), Positives = 206/363 (56%), Gaps = 13/363 (3%)
Query: 1 MAGLSLAEALKNNPTIPGGPWKVYGTARRPPPSWFPSSHVDHYITFDALDSTDTTQKLSS 60
+ G SLAE L T PGGPWKVYG ARR P+W + ++ Y+ D D D+ KLS
Sbjct: 12 IIGNSLAEILPLADT-PGGPWKVYGVARRTRPAWHEDNPIN-YVQCDISDPDDSQAKLSP 69
Query: 61 ISQEVTHLFWVMFQRLKSEEINISNNSTMFKNVMSVVVDSNKGRSRLRHVTLLMGTKHYM 120
++ +VTH+F+V + +E+ N NS MF+NV+ V+ + L+H++L G KHYM
Sbjct: 70 LT-DVTHVFYVTWANRSTEQENCEANSKMFRNVLDAVIPNC---PNLKHISLQTGRKHYM 125
Query: 121 GPVFDPSLVGQLIGHDPPFKEDSLRLPFPNFYYAVEDI---AASYSPAVTYSVHXXXXXX 177
GP G++ HDPP+ ED RL + NFYY +EDI +T+SVH
Sbjct: 126 GPF---ESYGKIESHDPPYTEDLPRLKYMNFYYDLEDIMLEEVEKKEGLTWSVHRPGNIF 182
Query: 178 XXXXXXXXXXXXXXAVYATICRHQGLPFRYLGNKYTWEHFCDMSDSRVLAEQQIWAATTD 237
VYA IC+H+G R+ G K W+ + D SD+ ++AE IWAA
Sbjct: 183 GFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDADLIAEHHIWAAVDP 242
Query: 238 RAKNQAFNCTNGDVFTWKSLWKLLSEIFDVEFVPFDEKEKFDAVEMMKEKGEIWDEIVEK 297
AKN+AFN +NGDVF WK WK+L+E F VE ++E ++MK K +W+EIV +
Sbjct: 243 YAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGVDLKLQDLMKGKEPVWEEIVRE 302
Query: 298 HGLYKTKMEEITCFEALNTVLHLQFQHVSSMNKSREFGFFGFADTMKSIRTWVKKLREMK 357
+GL TK++++ + + +L + + SMNKS+E GF GF ++ + +W+ K + K
Sbjct: 303 NGLTPTKLKDVGIWWFGDVILGNEC-FLDSMNKSKEHGFLGFRNSKNAFISWIDKAKAYK 361
Query: 358 IIP 360
I+P
Sbjct: 362 IVP 364
>pdb|4AAY|B Chain B, Crystal Structure Of The Arsenite Oxidase Protein Complex
From Rhizobium Species Strain Nt-26
pdb|4AAY|D Chain D, Crystal Structure Of The Arsenite Oxidase Protein Complex
From Rhizobium Species Strain Nt-26
pdb|4AAY|F Chain F, Crystal Structure Of The Arsenite Oxidase Protein Complex
From Rhizobium Species Strain Nt-26
pdb|4AAY|H Chain H, Crystal Structure Of The Arsenite Oxidase Protein Complex
From Rhizobium Species Strain Nt-26
Length = 175
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 194 YATICRHQGLPFRYLGNKYTWE---HFCDMSDSRVLAEQQIWAATTDRAKNQAFNCT-NG 249
++TIC H+G P Y + T+ HF + QQ+W T NG
Sbjct: 99 FSTICPHKGFPLSYSADNKTFNCPGHFSVFDPEK--GGQQVWGQATQNLPQYVLRVADNG 156
Query: 250 DVFT 253
D+F
Sbjct: 157 DIFA 160
>pdb|2X8U|A Chain A, Sphingomonas Wittichii Serine Palmitoyltransferase
pdb|2X8U|B Chain B, Sphingomonas Wittichii Serine Palmitoyltransferase
Length = 412
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 111 TLLMGTKHYMGPVFDPSLV 129
T+L+GT +YMG FDP ++
Sbjct: 46 TILLGTYNYMGMTFDPDVI 64
>pdb|2W8V|A Chain A, Spt With Plp, N100w
Length = 427
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 111 TLLMGTKHYMGPVFDPSLV 129
T+L+GT +YMG FDP ++
Sbjct: 66 TILLGTYNYMGMTFDPDVI 84
>pdb|2JGT|A Chain A, Low Resolution Structure Of Spt
pdb|2JGT|B Chain B, Low Resolution Structure Of Spt
Length = 422
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 111 TLLMGTKHYMGPVFDPSLV 129
T+L+GT +YMG FDP ++
Sbjct: 67 TILLGTYNYMGMTFDPDVI 85
>pdb|2W8T|A Chain A, Spt With Plp, N100c
Length = 427
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 111 TLLMGTKHYMGPVFDPSLV 129
T+L+GT +YMG FDP ++
Sbjct: 66 TILLGTYNYMGMTFDPDVI 84
>pdb|2W8J|A Chain A, Spt With Plp-Ser
pdb|2XBN|A Chain A, Inhibition Of The Plp-Dependent Enzyme Serine
Palmitoyltransferase By Cycloserine: Evidence For A
Novel Decarboxylative Mechanism Of Inactivation
Length = 427
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 111 TLLMGTKHYMGPVFDPSLV 129
T+L+GT +YMG FDP ++
Sbjct: 66 TILLGTYNYMGMTFDPDVI 84
>pdb|2W8W|A Chain A, N100y Spt With Plp-Ser
Length = 427
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 111 TLLMGTKHYMGPVFDPSLV 129
T+L+GT +YMG FDP ++
Sbjct: 66 TILLGTYNYMGMTFDPDVI 84
>pdb|2W8U|A Chain A, Spt With Plp, N100y
Length = 427
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 111 TLLMGTKHYMGPVFDPSLV 129
T+L+GT +YMG FDP ++
Sbjct: 66 TILLGTYNYMGMTFDPDVI 84
>pdb|2JG2|A Chain A, High Resolution Structure Of Spt With Plp Internal
Aldimine
Length = 422
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 111 TLLMGTKHYMGPVFDPSLV 129
T+L+GT +YMG FDP ++
Sbjct: 67 TILLGTYNYMGMTFDPDVI 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,648,122
Number of Sequences: 62578
Number of extensions: 412871
Number of successful extensions: 1159
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1145
Number of HSP's gapped (non-prelim): 10
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)