Your job contains 1 sequence.
>037567
MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS
PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS
KLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII
NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD
VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV
IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL
LAAQRYCLLTTCRR
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 037567
(374 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|O93530 - symbol:wrn "Werner syndrome ATP-depend... 840 6.4e-83 1
UNIPROTKB|F1NAR0 - symbol:F1NAR0 "Uncharacterized protein... 817 1.5e-80 1
UNIPROTKB|F1PZR2 - symbol:WRN "Uncharacterized protein" s... 805 2.7e-79 1
UNIPROTKB|F1PZR3 - symbol:WRN "Uncharacterized protein" s... 806 3.5e-79 1
UNIPROTKB|F1PUF8 - symbol:WRN "Uncharacterized protein" s... 806 4.1e-79 1
UNIPROTKB|Q14191 - symbol:WRN "Werner syndrome ATP-depend... 802 7.9e-79 1
ZFIN|ZDB-GENE-070702-2 - symbol:wrn "Werner syndrome" spe... 601 3.6e-78 2
MGI|MGI:109635 - symbol:Wrn "Werner syndrome homolog (hum... 781 1.3e-76 1
UNIPROTKB|F1RX70 - symbol:WRN "Uncharacterized protein" s... 781 1.3e-76 1
UNIPROTKB|I3LC91 - symbol:WRN "Uncharacterized protein" s... 781 1.7e-76 1
UNIPROTKB|E1BEE6 - symbol:WRN "Uncharacterized protein" s... 763 1.1e-74 1
RGD|1564788 - symbol:Wrn "Werner syndrome, RecQ helicase-... 744 1.4e-72 1
TAIR|locus:2197555 - symbol:RECQL2 "RECQ helicase L2" spe... 727 6.7e-72 1
WB|WBGene00006944 - symbol:wrn-1 species:6239 "Caenorhabd... 728 1.1e-71 1
UNIPROTKB|P15043 - symbol:recQ species:83333 "Escherichia... 716 9.9e-71 1
TIGR_CMR|GSU_0898 - symbol:GSU_0898 "ATP-dependent DNA he... 716 9.9e-71 1
TIGR_CMR|BA_2818 - symbol:BA_2818 "ATP-dependent DNA heli... 710 4.3e-70 1
WB|WBGene00019334 - symbol:K02F3.12 species:6239 "Caenorh... 708 7.0e-70 1
DICTYBASE|DDB_G0268512 - symbol:wrn "Werner syndrome prot... 714 8.1e-70 1
TIGR_CMR|CBU_0472 - symbol:CBU_0472 "ATP-dependent DNA he... 705 1.4e-69 1
TAIR|locus:2127998 - symbol:RecQl3 "AT4G35740" species:37... 700 4.9e-69 1
TIGR_CMR|SO_4241 - symbol:SO_4241 "ATP-dependent DNA heli... 697 1.0e-68 1
UNIPROTKB|O34748 - symbol:recQ "Probable ATP-dependent DN... 686 1.5e-67 1
UNIPROTKB|F1NPI7 - symbol:RECQL "Uncharacterized protein"... 672 4.5e-66 1
TAIR|locus:2180255 - symbol:RECQSIM "RECQ helicase SIM" s... 460 9.8e-66 2
DICTYBASE|DDB_G0292130 - symbol:blm "Bloom syndrome prote... 677 1.4e-65 1
UNIPROTKB|Q9KVF0 - symbol:VC_0196 "ATP-dependent DNA heli... 663 4.1e-65 1
TIGR_CMR|VC_0196 - symbol:VC_0196 "ATP-dependent DNA heli... 663 4.1e-65 1
TAIR|locus:2074429 - symbol:RECQI1 "RECQ helicase l1" spe... 659 1.1e-64 1
RGD|1311071 - symbol:Recql "RecQ protein-like (DNA helica... 653 4.7e-64 1
UNIPROTKB|Q6AYJ1 - symbol:Recql "ATP-dependent DNA helica... 653 4.7e-64 1
UNIPROTKB|A0JN36 - symbol:RECQL "Uncharacterized protein"... 649 1.2e-63 1
FB|FBgn0002906 - symbol:Blm "Bloom syndrome helicase orth... 660 1.5e-63 1
UNIPROTKB|P46063 - symbol:RECQL "ATP-dependent DNA helica... 648 1.6e-63 1
MGI|MGI:103021 - symbol:Recql "RecQ protein-like" species... 648 1.6e-63 1
UNIPROTKB|F1SR01 - symbol:RECQL "Uncharacterized protein"... 647 2.0e-63 1
WB|WBGene00001865 - symbol:him-6 species:6239 "Caenorhabd... 651 2.4e-63 1
TAIR|locus:2197394 - symbol:RECQ4A species:3702 "Arabidop... 648 1.5e-62 1
UNIPROTKB|F1PNP1 - symbol:RECQL "Uncharacterized protein"... 638 1.8e-62 1
CGD|CAL0004296 - symbol:SGS1 species:5476 "Candida albica... 644 4.0e-62 1
UNIPROTKB|Q5A5R4 - symbol:SGS1 "Putative uncharacterized ... 644 4.0e-62 1
ZFIN|ZDB-GENE-070702-5 - symbol:blm "Bloom syndrome" spec... 645 5.4e-62 1
ASPGD|ASPL0000045206 - symbol:musN species:162425 "Emeric... 640 2.2e-61 1
RGD|1308810 - symbol:Blm "Bloom syndrome, RecQ helicase-l... 630 5.6e-61 1
MGI|MGI:1328362 - symbol:Blm "Bloom syndrome, RecQ helica... 635 6.3e-61 1
UNIPROTKB|E2RS76 - symbol:BLM "Uncharacterized protein" s... 634 7.9e-61 1
UNIPROTKB|J9PB86 - symbol:BLM "Uncharacterized protein" s... 634 8.1e-61 1
UNIPROTKB|H0YNU5 - symbol:BLM "Bloom syndrome protein" sp... 632 1.0e-60 1
UNIPROTKB|E1BQ04 - symbol:BLM "Uncharacterized protein" s... 632 1.3e-60 1
UNIPROTKB|P54132 - symbol:BLM "Bloom syndrome protein" sp... 632 1.3e-60 1
UNIPROTKB|Q9DEY9 - symbol:blm "Bloom syndrome protein hom... 631 1.5e-60 1
SGD|S000004802 - symbol:SGS1 "Nucleolar DNA helicase of t... 630 2.3e-60 1
UNIPROTKB|F1ND40 - symbol:BLM "Bloom syndrome protein hom... 616 3.6e-59 1
UNIPROTKB|F1P3V1 - symbol:BLM "Bloom syndrome protein hom... 616 6.4e-59 1
UNIPROTKB|Q9I920 - symbol:BLM "Bloom syndrome protein hom... 610 1.6e-58 1
TIGR_CMR|SPO_0107 - symbol:SPO_0107 "ATP-dependent DNA he... 595 6.6e-58 1
DICTYBASE|DDB_G0272384 - symbol:DDB_G0272384 "Bloom syndr... 594 4.2e-57 1
UNIPROTKB|E1BKM5 - symbol:RECQL5 "Uncharacterized protein... 590 1.2e-56 1
UNIPROTKB|I3LFW3 - symbol:RECQL5 "Uncharacterized protein... 578 4.2e-56 1
POMBASE|SPAC2G11.12 - symbol:rqh1 "RecQ type DNA helicase... 588 5.8e-56 1
UNIPROTKB|J3KTQ2 - symbol:RECQL5 "ATP-dependent DNA helic... 574 1.1e-55 1
UNIPROTKB|O94762 - symbol:RECQL5 "ATP-dependent DNA helic... 574 7.0e-55 1
UNIPROTKB|F1NWK5 - symbol:F1NWK5 "Uncharacterized protein... 556 1.5e-54 2
ZFIN|ZDB-GENE-050809-134 - symbol:recql "RecQ protein-lik... 559 4.3e-54 1
UNIPROTKB|F1NT69 - symbol:F1NT69 "Uncharacterized protein... 556 8.9e-54 1
UNIPROTKB|Q47WD5 - symbol:CPS_4237 "RecQ domain protein" ... 541 3.5e-52 1
UNIPROTKB|Q8EEK1 - symbol:SO_2380 "ATP-dependent DNA heli... 541 3.5e-52 1
TIGR_CMR|CPS_4237 - symbol:CPS_4237 "RecQ domain protein"... 541 3.5e-52 1
TIGR_CMR|SO_2380 - symbol:SO_2380 "RecQ domain protein" s... 541 3.5e-52 1
TIGR_CMR|BA_1505 - symbol:BA_1505 "ATP-dependent DNA heli... 540 4.4e-52 1
RGD|1310823 - symbol:Recql5 "RecQ protein-like 5" species... 543 1.5e-51 1
UNIPROTKB|F1PAG8 - symbol:RECQL5 "Uncharacterized protein... 537 7.2e-51 1
GENEDB_PFALCIPARUM|PF14_0278 - symbol:PF14_0278 "ATP-depe... 530 1.1e-49 1
UNIPROTKB|Q8ILG5 - symbol:PF14_0278 "ATP-dependent DNA he... 530 1.1e-49 1
TAIR|locus:2029799 - symbol:AT1G27880 species:3702 "Arabi... 513 2.1e-48 1
UNIPROTKB|Q6P4G0 - symbol:RECQL5 "ATP-dependent DNA helic... 459 4.2e-45 2
FB|FBgn0040290 - symbol:RecQ4 "RecQ4" species:7227 "Droso... 284 3.1e-44 2
ASPGD|ASPL0000072255 - symbol:recQ species:162425 "Emeric... 308 2.6e-42 2
UNIPROTKB|Q33DM4 - symbol:recql4 "RecQ4 protein" species:... 286 3.4e-42 2
UNIPROTKB|Q4JNX8 - symbol:RTS "RECQL4-helicase-like prote... 279 1.9e-41 2
WB|WBGene00004322 - symbol:rcq-5 species:6239 "Caenorhabd... 416 4.5e-38 1
FB|FBgn0027375 - symbol:RecQ5 "homolog of RecQ" species:7... 413 1.9e-37 1
UNIPROTKB|F1RMJ3 - symbol:BLM "Uncharacterized protein" s... 364 2.8e-33 1
UNIPROTKB|O94761 - symbol:RECQL4 "ATP-dependent DNA helic... 357 2.4e-31 1
UNIPROTKB|A5D786 - symbol:RECQL4 "RECQL4 protein" species... 349 1.7e-30 1
UNIPROTKB|H9KZS5 - symbol:H9KZS5 "Uncharacterized protein... 202 1.9e-28 3
UNIPROTKB|F1RSP7 - symbol:RECQL4 "Uncharacterized protein... 328 2.9e-28 1
UNIPROTKB|K7GSZ9 - symbol:RECQL4 "Uncharacterized protein... 328 3.0e-28 1
UNIPROTKB|F1RV44 - symbol:RECQL4 "Uncharacterized protein... 328 3.0e-28 1
POMBASE|SPBCPT2R1.08c - symbol:tlh2 "RecQ type DNA helica... 314 1.8e-26 1
POMBASE|SPAC212.11 - symbol:tlh1 "RecQ type DNA helicase"... 314 2.0e-26 1
UNIPROTKB|E2RDN3 - symbol:E2RDN3 "Uncharacterized protein... 300 2.7e-25 1
RGD|1307732 - symbol:Recql4 "RecQ protein-like 4" species... 296 7.7e-25 1
MGI|MGI:1931028 - symbol:Recql4 "RecQ protein-like 4" spe... 284 1.5e-23 1
UNIPROTKB|Q47ZX4 - symbol:CPS_2945 "Putative DEAD/DEAH bo... 275 7.5e-23 1
TIGR_CMR|CPS_2945 - symbol:CPS_2945 "putative DEAD/DEAH b... 275 7.5e-23 1
ASPGD|ASPL0000073665 - symbol:AN5092 species:162425 "Emer... 245 1.2e-17 1
UNIPROTKB|F1RMJ2 - symbol:BLM "Uncharacterized protein" s... 235 2.9e-17 1
UNIPROTKB|F8WD97 - symbol:RECQL "ATP-dependent DNA helica... 209 1.4e-16 1
UNIPROTKB|F8WA66 - symbol:RECQL "ATP-dependent DNA helica... 203 6.7e-16 1
WARNING: Descriptions of 590 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|O93530 [details] [associations]
symbol:wrn "Werner syndrome ATP-dependent helicase homolog"
species:8355 "Xenopus laevis" [GO:0000287 "magnesium ion binding"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
[GO:0008408 "3'-5' exonuclease activity" evidence=ISS] [GO:0030145
"manganese ion binding" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF01612 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0005634 GO:GO:0000287
GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030145 GO:GO:0006310
SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 KO:K10900 CTD:7486 HOVERGEN:HBG000325
EMBL:AF067418 PIR:T14895 RefSeq:NP_001081838.1 UniGene:Xl.404
ProteinModelPortal:O93530 SMR:O93530 GeneID:398079 KEGG:xla:398079
Xenbase:XB-GENE-992879 Uniprot:O93530
Length = 1436
Score = 840 (300.8 bits), Expect = 6.4e-83, P = 6.4e-83
Identities = 179/380 (47%), Positives = 240/380 (63%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRII-EKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+S LK YFG+S F+P Q V+ ++ E+RD LVVMATG GKSLCYQ P+ T +V+
Sbjct: 478 ISCLKTYFGHSSFKPVQWKVVHSVLRERRDNLVVMATGYGKSLCYQFAPVYTSGIGIVIC 537
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L+ I++ FLGSAQ+ + +Q + G ++++MTPE C IS
Sbjct: 538 PLISLMEDQVLQLEMSNISSCFLGSAQSKNVLQD-VKDGKMRVIYMTPE-FCSRGISLLQ 595
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L + G+ L A+DEAHCISEWGHDFR Y+ L L+ L VP VALTATA+ +R DI
Sbjct: 596 DLDNRYGITLIAIDEAHCISEWGHDFRSAYRSLGSLKRMLPNVPIVALTATASPSIREDI 655
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAG-----SIIVY 234
SL L NP VT SFDR NL+ + V + + +L Q ++K G+G + IVY
Sbjct: 656 TKSLNLHNPQVTCTSFDRPNLY--LDVARKTTNISIDLRQFLIKKQQGSGWEFEGATIVY 713
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C T K E+++ L +LG+ GTYH MG K R E H F+RDEI +VAT+AFGMGI+K
Sbjct: 714 CPTRKTSEQVTAELIKLGIACGTYHAGMGIKQRREVHHRFMRDEIHCVVATVAFGMGINK 773
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
PD+R VIHYG PK +ESYYQE GR GRDG+ S C +A+++ GE + R
Sbjct: 774 PDIRKVIHYGAPKEMESYYQEIGRAGRDGLPSCCHALWAQADMNFNRHMLGEIPNKGFRE 833
Query: 355 AIMESLLAAQRYCLLTTCRR 374
++ L ++Y +TCRR
Sbjct: 834 YKLKMLTKMEKYLNSSTCRR 853
>UNIPROTKB|F1NAR0 [details] [associations]
symbol:F1NAR0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0000403 "Y-form DNA
binding" evidence=IEA] [GO:0000405 "bubble DNA binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=IEA]
[GO:0001302 "replicative cell aging" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] [GO:0006284 "base-excision
repair" evidence=IEA] [GO:0006979 "response to oxidative stress"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0009267 "cellular response to starvation"
evidence=IEA] [GO:0009378 "four-way junction helicase activity"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0010259 "multicellular organismal aging" evidence=IEA]
[GO:0030145 "manganese ion binding" evidence=IEA] [GO:0031297
"replication fork processing" evidence=IEA] [GO:0032066 "nucleolus
to nucleoplasm transport" evidence=IEA] [GO:0032389 "MutLalpha
complex" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0042981 "regulation of apoptotic process" evidence=IEA]
[GO:0051345 "positive regulation of hydrolase activity"
evidence=IEA] [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS51194
SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
GO:GO:0008408 GO:GO:0051345 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723 GO:GO:0010225
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731 GO:GO:0000405
GO:GO:0009378 GO:GO:0051880 GO:GO:0031297 GO:GO:0032389
GO:GO:0032066 OMA:GIEGDQW EMBL:AADN02016143 IPI:IPI01017120
Ensembl:ENSGALT00000016720 Uniprot:F1NAR0
Length = 1367
Score = 817 (292.7 bits), Expect = 1.5e-80, P = 1.5e-80
Identities = 170/379 (44%), Positives = 240/379 (63%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LK YFG+S F+P Q VI ++E KRD LVVMATG GKSLCYQ PP+ TG T +V+
Sbjct: 448 IACLKTYFGHSSFKPVQWKVIHSVLEDKRDNLVVMATGYGKSLCYQFPPVYTGGTGIVIC 507
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L GI++ LGSAQ+ V+ + G +++++MTPE C +
Sbjct: 508 PLISLMEDQVLQLTMSGISSCLLGSAQS-KDVKDNIKAGLYRVIYMTPE-FCSGNLELLQ 565
Query: 121 KLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+ + G+ L AVDEAHCISEWGHDFR+ +++L+ L+ L VP VALTATA+ +R DI
Sbjct: 566 DIDRTTGIALIAVDEAHCISEWGHDFRISFRKLNSLKKALPSVPIVALTATASPSIREDI 625
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGA-----GSIIVY 234
+N L LKNP VT SFDR NL+ ++V + + + +L Q + + + + G I+Y
Sbjct: 626 VNCLNLKNPQVTCTSFDRPNLY--LEVGRQSGNTLRDLKQFLTRKGSSSTYEFEGPTIIY 683
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C + K E++ L +LGV G YH MG + R + H F+RDEI+ +VAT+AFGMGI+K
Sbjct: 684 CPSRKATEQVMFELNKLGVTCGAYHAGMGIQKRRDTHHQFMRDEIQCVVATVAFGMGINK 743
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
D+R VIHYG PK +ESYYQE GR GRDG+ + C + + ++ E E R
Sbjct: 744 ADIRMVIHYGAPKEMESYYQEIGRAGRDGLPASCHVLWTAADLVLNRRLLNEIHNEKFRL 803
Query: 355 AIMESLLAAQRYCLLTTCR 373
++ L ++Y +CR
Sbjct: 804 YKLKMLEKMEKYLSSNSCR 822
>UNIPROTKB|F1PZR2 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000010396
Uniprot:F1PZR2
Length = 1336
Score = 805 (288.4 bits), Expect = 2.7e-79, P = 2.7e-79
Identities = 173/379 (45%), Positives = 240/379 (63%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LK YFG+S F+P Q VI ++E +RD +VVMATG GKSLC+Q PP+ +G+ LV+S
Sbjct: 514 INFLKIYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYSGRIGLVIS 573
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ LK I A FLGSAQ+ +V + G ++++++TPE C + F
Sbjct: 574 PLISLMEDQVLQLKMSNIPACFLGSAQS-KNVLEDIKLGKYRIVYITPE-FCSGNL-FLL 630
Query: 121 KLLKA--GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ L+A G+ L AVDEAHCISEWGHDFR ++ L L+ L VP VALTATA+ +R D
Sbjct: 631 QQLQADIGITLIAVDEAHCISEWGHDFRSSFRTLGSLKAILPSVPIVALTATASSSIRED 690
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGV--KVINRGQSFVDELVQEILKSV-AGAGSIIVYC 235
I+ L LKNP +T FDR NL+ V K + Q LVQ+ S+ G I+YC
Sbjct: 691 IVRCLNLKNPQITCTGFDRPNLYLEVRRKTGSILQDLDQFLVQKTRNSIWEFEGPTIIYC 750
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
+ K E+++ L++L + G YH + K+R E H F+RDEI+ +VAT+AFGMGI+K
Sbjct: 751 PSRKTTEQVTAELRKLKLACGAYHAGLDIKSRREIHHRFMRDEIQCVVATIAFGMGINKA 810
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTA 355
D+R VIHYG PK +ESYYQE GR GRDG+ S C + +A ++ E +E R
Sbjct: 811 DIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADICLNRHRLSEITSEKFRLY 870
Query: 356 IMESLLAAQRYCLLTTCRR 374
++ + ++Y T CRR
Sbjct: 871 KLKMMAKMEKYLHSTRCRR 889
>UNIPROTKB|F1PZR3 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000010395
Uniprot:F1PZR3
Length = 1499
Score = 806 (288.8 bits), Expect = 3.5e-79, P = 3.5e-79
Identities = 170/380 (44%), Positives = 242/380 (63%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LK YFG+S F+P Q VI ++E +RD +VVMATG GKSLC+Q PP+ +G+ LV+S
Sbjct: 595 INFLKIYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYSGRIGLVIS 654
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ LK I A FLGSAQ+ +V + G ++++++TPE C + F
Sbjct: 655 PLISLMEDQVLQLKMSNIPACFLGSAQS-KNVLEDIKLGKYRIVYITPE-FCSGNL-FLL 711
Query: 121 KLLKA--GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ L+A G+ L AVDEAHCISEWGHDFR ++ L L+ L VP VALTATA+ +R D
Sbjct: 712 QQLQADIGITLIAVDEAHCISEWGHDFRSSFRTLGSLKAILPSVPIVALTATASSSIRED 771
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGA----GSIIVY 234
I+ L LKNP +T FDR NL+ V+ + S + +L Q +++ + G I+Y
Sbjct: 772 IVRCLNLKNPQITCTGFDRPNLYLEVR--RKTGSILQDLDQFLVQKTSSIWEFEGPTIIY 829
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C + K E+++ L++L + G YH + K+R E H F+RDEI+ +VAT+AFGMGI+K
Sbjct: 830 CPSRKTTEQVTAELRKLKLACGAYHAGLDIKSRREIHHRFMRDEIQCVVATIAFGMGINK 889
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
D+R VIHYG PK +ESYYQE GR GRDG+ S C + +A ++ E +E R
Sbjct: 890 ADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADICLNRHRLSEITSEKFRL 949
Query: 355 AIMESLLAAQRYCLLTTCRR 374
++ + ++Y T CRR
Sbjct: 950 YKLKMMAKMEKYLHSTRCRR 969
>UNIPROTKB|F1PUF8 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002562
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012337 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00474 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AAEX03010418 Ensembl:ENSCAFT00000037050
OMA:TERICLM Uniprot:F1PUF8
Length = 1574
Score = 806 (288.8 bits), Expect = 4.1e-79, P = 4.1e-79
Identities = 170/380 (44%), Positives = 242/380 (63%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LK YFG+S F+P Q VI ++E +RD +VVMATG GKSLC+Q PP+ +G+ LV+S
Sbjct: 627 INFLKIYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYSGRIGLVIS 686
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ LK I A FLGSAQ+ +V + G ++++++TPE C + F
Sbjct: 687 PLISLMEDQVLQLKMSNIPACFLGSAQS-KNVLEDIKLGKYRIVYITPE-FCSGNL-FLL 743
Query: 121 KLLKA--GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ L+A G+ L AVDEAHCISEWGHDFR ++ L L+ L VP VALTATA+ +R D
Sbjct: 744 QQLQADIGITLIAVDEAHCISEWGHDFRSSFRTLGSLKAILPSVPIVALTATASSSIRED 803
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGA----GSIIVY 234
I+ L LKNP +T FDR NL+ V+ + S + +L Q +++ + G I+Y
Sbjct: 804 IVRCLNLKNPQITCTGFDRPNLYLEVR--RKTGSILQDLDQFLVQKTSSIWEFEGPTIIY 861
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C + K E+++ L++L + G YH + K+R E H F+RDEI+ +VAT+AFGMGI+K
Sbjct: 862 CPSRKTTEQVTAELRKLKLACGAYHAGLDIKSRREIHHRFMRDEIQCVVATIAFGMGINK 921
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
D+R VIHYG PK +ESYYQE GR GRDG+ S C + +A ++ E +E R
Sbjct: 922 ADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADICLNRHRLSEITSEKFRL 981
Query: 355 AIMESLLAAQRYCLLTTCRR 374
++ + ++Y T CRR
Sbjct: 982 YKLKMMAKMEKYLHSTRCRR 1001
>UNIPROTKB|Q14191 [details] [associations]
symbol:WRN "Werner syndrome ATP-dependent helicase"
species:9606 "Homo sapiens" [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0001302 "replicative cell aging" evidence=IEA] [GO:0040009
"regulation of growth rate" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031297 "replication fork processing" evidence=IMP;IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0007569 "cell aging" evidence=IMP]
[GO:0010259 "multicellular organismal aging" evidence=IMP]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA]
[GO:0007568 "aging" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003678 "DNA helicase activity" evidence=IDA;IMP]
[GO:0004386 "helicase activity" evidence=IDA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] [GO:0032403 "protein
complex binding" evidence=IDA] [GO:0000731 "DNA synthesis involved
in DNA repair" evidence=IDA] [GO:0010225 "response to UV-C"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0032389 "MutLalpha complex" evidence=IDA] [GO:0000403 "Y-form
DNA binding" evidence=IDA] [GO:0043138 "3'-5' DNA helicase
activity" evidence=IDA] [GO:0000405 "bubble DNA binding"
evidence=IDA] [GO:0009378 "four-way junction helicase activity"
evidence=IDA] [GO:0051880 "G-quadruplex DNA binding" evidence=IDA]
[GO:0006284 "base-excision repair" evidence=IDA] [GO:0051345
"positive regulation of hydrolase activity" evidence=IDA]
[GO:0006979 "response to oxidative stress" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] [GO:0000287 "magnesium ion
binding" evidence=IDA] [GO:0030145 "manganese ion binding"
evidence=IDA] [GO:0006259 "DNA metabolic process" evidence=IDA]
[GO:0006302 "double-strand break repair" evidence=IMP] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0071480 "cellular response to gamma
radiation" evidence=IDA] [GO:0004527 "exonuclease activity"
evidence=IDA] [GO:0009267 "cellular response to starvation"
evidence=IDA] [GO:0032066 "nucleolus to nucleoplasm transport"
evidence=IDA] [GO:0042981 "regulation of apoptotic process"
evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0032508 "DNA duplex unwinding"
evidence=IMP;IDA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00474 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0005813 Pathway_Interaction_DB:telomerasepathway
GO:GO:0042803 GO:GO:0005654 GO:GO:0006979 GO:GO:0005730
GO:GO:0042981 GO:GO:0032403 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 GO:GO:0004003 SUPFAM:SSF53098
MIM:114500 GO:GO:0040009 GO:GO:0008408 GO:GO:0051345 GO:GO:0010259
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000723 GO:GO:0010225 GO:GO:0007569 eggNOG:COG0514
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403
GO:GO:0000731 GO:GO:0000405 GO:GO:0009378 GO:GO:0051880
GO:GO:0031297 GO:GO:0043138 GO:GO:0032066 KO:K10900 EMBL:L76937
EMBL:AY818673 EMBL:AF091214 EMBL:AF181897 EMBL:AF181896
EMBL:AY442327 EMBL:AC084736 IPI:IPI00029107 RefSeq:NP_000544.2
UniGene:Hs.632050 PDB:2AXL PDB:2DGZ PDB:2E1E PDB:2E1F PDB:2FBT
PDB:2FBV PDB:2FBX PDB:2FBY PDB:2FC0 PDB:3AAF PDBsum:2AXL
PDBsum:2DGZ PDBsum:2E1E PDBsum:2E1F PDBsum:2FBT PDBsum:2FBV
PDBsum:2FBX PDBsum:2FBY PDBsum:2FC0 PDBsum:3AAF DisProt:DP00443
ProteinModelPortal:Q14191 SMR:Q14191 DIP:DIP-31380N IntAct:Q14191
MINT:MINT-95856 STRING:Q14191 PhosphoSite:Q14191 DMDM:6136393
PaxDb:Q14191 PRIDE:Q14191 Ensembl:ENST00000298139 GeneID:7486
KEGG:hsa:7486 UCSC:uc003xio.4 CTD:7486 GeneCards:GC08P030948
H-InvDB:HIX0007441 HGNC:HGNC:12791 HPA:HPA028661 MIM:277700
MIM:604611 neXtProt:NX_Q14191 Orphanet:902 PharmGKB:PA367
HOGENOM:HOG000146447 HOVERGEN:HBG000325 InParanoid:Q14191
OMA:GIEGDQW OrthoDB:EOG4DNF3J PhylomeDB:Q14191
EvolutionaryTrace:Q14191 GenomeRNAi:7486 NextBio:29326 Bgee:Q14191
CleanEx:HS_WRN Genevestigator:Q14191 GermOnline:ENSG00000165392
Uniprot:Q14191
Length = 1432
Score = 802 (287.4 bits), Expect = 7.9e-79, P = 7.9e-79
Identities = 166/378 (43%), Positives = 241/378 (63%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
V+ LK YFG+S F+P Q VI ++E +RD + VMATG GKSLC+Q PP+ GK LV+S
Sbjct: 537 VTCLKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGLVIS 596
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ LK I A FLGSAQ+++ V T + G ++++++TPE C +
Sbjct: 597 PLISLMEDQVLQLKMSNIPACFLGSAQSEN-VLTDIKLGKYRIVYVTPEY-CSGNMGLLQ 654
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L G+ L AVDEAHCISEWGHDFR +++L L+T L VP VALTATA+ +R DI
Sbjct: 655 QLEADIGITLIAVDEAHCISEWGHDFRDSFRKLGSLKTALPMVPIVALTATASSSIREDI 714
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG---AGSIIVYCM 236
+ L L+NP +T FDR NL+ V+ + + + +L ++K+ + G I+YC
Sbjct: 715 VRCLNLRNPQITCTGFDRPNLYLEVR--RKTGNILQDLQPFLVKTSSHWEFEGPTIIYCP 772
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K ++++ L++L + GTYH M R++ H F+RDEI+ ++AT+AFGMGI+K D
Sbjct: 773 SRKMTQQVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATIAFGMGINKAD 832
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
+R VIHYG PK +ESYYQE GR GRDG+ S C + +A ++ E + E R
Sbjct: 833 IRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEIRNEKFRLYK 892
Query: 357 MESLLAAQRYCLLTTCRR 374
++ + ++Y + CRR
Sbjct: 893 LKMMAKMEKYLHSSRCRR 910
>ZFIN|ZDB-GENE-070702-2 [details] [associations]
symbol:wrn "Werner syndrome" species:7955 "Danio
rerio" [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0044237
"cellular metabolic process" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00474 SMART:SM00490
SMART:SM00956 ZFIN:ZDB-GENE-070702-2 GO:GO:0005524 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0005622 GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:BX537303 IPI:IPI00993584
ProteinModelPortal:E9QGF6 Ensembl:ENSDART00000136531 Uniprot:E9QGF6
Length = 1436
Score = 601 (216.6 bits), Expect = 3.6e-78, Sum P(2) = 3.6e-78
Identities = 136/303 (44%), Positives = 188/303 (62%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRII-EKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ LK +FG+ F+P Q VIQ I+ E+RD LVVMATG GKSLC+Q PP+ ++V+S
Sbjct: 432 IKCLKMFFGHHSFKPVQWKVIQSILTERRDNLVVMATGYGKSLCFQFPPVYCQTISVVIS 491
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLI+LM+DQV+ L I A FLGSAQT ++ + + G F++++MTPE C I
Sbjct: 492 PLIALMEDQVLQLTMSNIPACFLGSAQT-KNLNEQVKRGDFRVVYMTPE-FCSGNIPLLV 549
Query: 121 KLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L + G+ L AVDEAHCIS+WGHDFR Y++L KL+ L VPF+ALTATA+ +R DI
Sbjct: 550 QLDRTVGLSLIAVDEAHCISQWGHDFRSAYRELGKLKKNLPTVPFLALTATASPSIRDDI 609
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGA----GSIIVYC 235
I SL L NP +T SFDR NL+ V + + +L + ++K G GS IVYC
Sbjct: 610 IKSLHLINPMITCTSFDRPNLYLDVN--RKSGDVIQDLKRFLVKKKGGGYEFEGSAIVYC 667
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVM---VATMAFGMGI 292
+ K+ E ++ AL +L + G YH + K R E F+RDEI+V VA + G+
Sbjct: 668 PSKKEAERVTTALFKLDIPCGVYHAGLSIKQRRETQHQFMRDEIQVHAYDVAAVVSVPGV 727
Query: 293 DKP 295
+ P
Sbjct: 728 NPP 730
Score = 228 (85.3 bits), Expect = 3.6e-78, Sum P(2) = 3.6e-78
Identities = 43/93 (46%), Positives = 61/93 (65%)
Query: 282 MVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD 341
+VAT+AFGMGI+K D+R VIHYG PK +ESYYQE GR GRDG+ S C + + + A
Sbjct: 770 VVATVAFGMGINKSDIRKVIHYGAPKEMESYYQEIGRAGRDGLPSACHVLWMPGDMALNK 829
Query: 342 FYCGESQTENQRTAIMESLLAAQRYCLLTTCRR 374
F +S++E R+ ++ + ++Y T CRR
Sbjct: 830 FILNQSKSERFRSYKIDMMAKMEKYLNSTKCRR 862
>MGI|MGI:109635 [details] [associations]
symbol:Wrn "Werner syndrome homolog (human)" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=ISO] [GO:0000403
"Y-form DNA binding" evidence=ISO] [GO:0000405 "bubble DNA binding"
evidence=ISO] [GO:0000723 "telomere maintenance"
evidence=ISO;IGI;IMP] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=ISO] [GO:0001302 "replicative cell aging"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003678 "DNA helicase
activity" evidence=ISO] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=ISO]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=ISO] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=ISO;IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0005813 "centrosome" evidence=ISO]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006259 "DNA metabolic process" evidence=ISO;IMP] [GO:0006260
"DNA replication" evidence=ISO;IMP] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006284 "base-excision repair" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=ISO] [GO:0006979 "response to oxidative
stress" evidence=ISO] [GO:0007569 "cell aging" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008152 "metabolic process" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=ISO;IDA] [GO:0009267 "cellular
response to starvation" evidence=ISO] [GO:0009378 "four-way
junction helicase activity" evidence=ISO] [GO:0010225 "response to
UV-C" evidence=ISO] [GO:0010259 "multicellular organismal aging"
evidence=ISO;IGI] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030145 "manganese
ion binding" evidence=ISO] [GO:0031297 "replication fork
processing" evidence=ISO] [GO:0032066 "nucleolus to nucleoplasm
transport" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=ISO] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0040009 "regulation of growth rate" evidence=IMP] [GO:0042803
"protein homodimerization activity" evidence=ISO] [GO:0042981
"regulation of apoptotic process" evidence=ISO] [GO:0043138 "3'-5'
DNA helicase activity" evidence=ISO] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=IEA] [GO:0044237 "cellular
metabolic process" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051345 "positive regulation of hydrolase
activity" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
evidence=ISO] [GO:0071480 "cellular response to gamma radiation"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00474 SMART:SM00490 SMART:SM00956 MGI:MGI:109635
GO:GO:0005524 GO:GO:0005654 GO:GO:0005730 GO:GO:0000287
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145 GO:GO:0006310
GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009 GO:GO:0008408
GO:GO:0010259 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000723 eggNOG:COG0514
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0032066 KO:K10900 CTD:7486
HOGENOM:HOG000146447 HOVERGEN:HBG000325 OMA:GIEGDQW
OrthoDB:EOG4DNF3J EMBL:D86527 EMBL:D86526 EMBL:AF091215
EMBL:AF091216 EMBL:AF241636 EMBL:AC153789 EMBL:AC115809
EMBL:BC050921 EMBL:BC060700 IPI:IPI00113830 PIR:T17452 PIR:T30247
RefSeq:NP_001116294.1 RefSeq:NP_035851.3 UniGene:Mm.228805 PDB:2E6L
PDB:2E6M PDBsum:2E6L PDBsum:2E6M ProteinModelPortal:O09053
SMR:O09053 DIP:DIP-27642N STRING:O09053 PhosphoSite:O09053
PaxDb:O09053 PRIDE:O09053 Ensembl:ENSMUST00000033990
Ensembl:ENSMUST00000033991 GeneID:22427 KEGG:mmu:22427
InParanoid:Q80YP9 EvolutionaryTrace:O09053 NextBio:302865
Bgee:O09053 CleanEx:MM_WRN Genevestigator:O09053
GermOnline:ENSMUSG00000031583 Uniprot:O09053
Length = 1401
Score = 781 (280.0 bits), Expect = 1.3e-76, P = 1.3e-76
Identities = 166/377 (44%), Positives = 237/377 (62%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LK YFG+S F+P Q VI ++E +RD +VVMATG GKSLC+Q PP+ TGK +V+S
Sbjct: 501 INCLKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVIS 560
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L+ + A LGSAQ+ ++ + G ++++++TPE C +
Sbjct: 561 PLISLMEDQVLQLELSNVPACLLGSAQS-KNILGDVKLGKYRVIYITPE-FCSGNLDLLQ 618
Query: 121 KLLKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L + G+ L AVDEAHCISEWGHDFR ++ L L+T L VP +AL+ATA+ +R DI
Sbjct: 619 QLDSSIGITLIAVDEAHCISEWGHDFRSSFRMLGSLKTALPLVPVIALSATASSSIREDI 678
Query: 180 INSLKLKNPYVTIASFDRKNLFY--GVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
I+ L LK+P +T FDR NL+ G K N Q LV++ + G I+YC +
Sbjct: 679 ISCLNLKDPQITCTGFDRPNLYLEVGRKTGNILQDLKPFLVRKASSAWEFEGPTIIYCPS 738
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K E+++ L +L + TYH M R++ H F+RDEI+ +VAT+AFGMGI+K D+
Sbjct: 739 RKMTEQVTAELGKLNLACRTYHAGMKISERKDVHHRFLRDEIQCVVATVAFGMGINKADI 798
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHYG PK +ESYYQE GR GRDG+ S C L +A ++F E E R +
Sbjct: 799 RKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTSRNLLIEIHDEKFRLYKL 858
Query: 358 ESLLAAQRYCLLTTCRR 374
+ ++ ++Y + CRR
Sbjct: 859 KMMVKMEKYLHSSQCRR 875
>UNIPROTKB|F1RX70 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00474
SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0005622 GO:GO:0006310 SUPFAM:SSF53098 GO:GO:0008408
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:FP102088 EMBL:FP565873
Ensembl:ENSSSCT00000017248 Uniprot:F1RX70
Length = 1409
Score = 781 (280.0 bits), Expect = 1.3e-76, P = 1.3e-76
Identities = 167/377 (44%), Positives = 233/377 (61%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LK YFG+S F+P Q VI I+E +RD +VVMATG GKSLC+Q PP+ G LV+S
Sbjct: 505 INCLKTYFGHSSFKPVQWKVIHSILEERRDNVVVMATGYGKSLCFQYPPVSVGGIGLVIS 564
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L+ I A FLGSAQ+ +V + G ++++++TPE C +
Sbjct: 565 PLISLMEDQVLQLEMSNIPACFLGSAQS-KNVLEDIKLGKYRIVYLTPE-FCSGNLDLLQ 622
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L G+ + AVDEAHCISEWGHDFR ++ L L++ L VP VALTAT T +R DI
Sbjct: 623 HLEANIGITVIAVDEAHCISEWGHDFRNSFRTLGSLKSALPLVPIVALTATGTSSIREDI 682
Query: 180 INSLKLKNPYVTIASFDRKNLFY--GVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
+ LKLK+P +T FDR NL+ G K + Q LVQ+ + G I+YC +
Sbjct: 683 VRCLKLKDPQITCTGFDRPNLYLEVGRKTGDILQDLKQFLVQKTSSAWEFEGPTIIYCPS 742
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K E+++ LK+L + TYH + R++ H F+RDEI+ ++AT+AFGMGI+K D+
Sbjct: 743 RKMTEQVTAELKKLKLACETYHAGLSIHLRKQVHHKFMRDEIQCVIATIAFGMGINKADI 802
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHYG PK +ESYYQE GR GRDG+ S C + +A ++ E EN R +
Sbjct: 803 RKVIHYGAPKEIESYYQEIGRAGRDGLQSSCHILWAPADINLNRHLLSEICNENFRLYKL 862
Query: 358 ESLLAAQRYCLLTTCRR 374
+ + ++Y + CRR
Sbjct: 863 KMMAKMEKYLHSSRCRR 879
>UNIPROTKB|I3LC91 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
[GO:0051345 "positive regulation of hydrolase activity"
evidence=IEA] [GO:0042981 "regulation of apoptotic process"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
[GO:0032403 "protein complex binding" evidence=IEA] [GO:0032389
"MutLalpha complex" evidence=IEA] [GO:0032066 "nucleolus to
nucleoplasm transport" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0030145 "manganese ion binding"
evidence=IEA] [GO:0010259 "multicellular organismal aging"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0009267 "cellular response to starvation" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0001302 "replicative cell aging"
evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0000403 "Y-form
DNA binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
GO:GO:0008408 GO:GO:0051345 GO:GO:0010259 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
GO:GO:0010225 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0031297
GO:GO:0032389 GO:GO:0032066 OMA:GIEGDQW EMBL:FP102088 EMBL:FP565873
Ensembl:ENSSSCT00000022344 Uniprot:I3LC91
Length = 1507
Score = 781 (280.0 bits), Expect = 1.7e-76, P = 1.7e-76
Identities = 167/377 (44%), Positives = 233/377 (61%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LK YFG+S F+P Q VI I+E +RD +VVMATG GKSLC+Q PP+ G LV+S
Sbjct: 604 INCLKTYFGHSSFKPVQWKVIHSILEERRDNVVVMATGYGKSLCFQYPPVSVGGIGLVIS 663
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L+ I A FLGSAQ+ +V + G ++++++TPE C +
Sbjct: 664 PLISLMEDQVLQLEMSNIPACFLGSAQS-KNVLEDIKLGKYRIVYLTPE-FCSGNLDLLQ 721
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L G+ + AVDEAHCISEWGHDFR ++ L L++ L VP VALTAT T +R DI
Sbjct: 722 HLEANIGITVIAVDEAHCISEWGHDFRNSFRTLGSLKSALPLVPIVALTATGTSSIREDI 781
Query: 180 INSLKLKNPYVTIASFDRKNLFY--GVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
+ LKLK+P +T FDR NL+ G K + Q LVQ+ + G I+YC +
Sbjct: 782 VRCLKLKDPQITCTGFDRPNLYLEVGRKTGDILQDLKQFLVQKTSSAWEFEGPTIIYCPS 841
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K E+++ LK+L + TYH + R++ H F+RDEI+ ++AT+AFGMGI+K D+
Sbjct: 842 RKMTEQVTAELKKLKLACETYHAGLSIHLRKQVHHKFMRDEIQCVIATIAFGMGINKADI 901
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIM 357
R VIHYG PK +ESYYQE GR GRDG+ S C + +A ++ E EN R +
Sbjct: 902 RKVIHYGAPKEIESYYQEIGRAGRDGLQSSCHILWAPADINLNRHLLSEICNENFRLYKL 961
Query: 358 ESLLAAQRYCLLTTCRR 374
+ + ++Y + CRR
Sbjct: 962 KMMAKMEKYLHSSRCRR 978
>UNIPROTKB|E1BEE6 [details] [associations]
symbol:WRN "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
[GO:0051345 "positive regulation of hydrolase activity"
evidence=IEA] [GO:0042981 "regulation of apoptotic process"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IEA] [GO:0040009 "regulation of growth rate" evidence=IEA]
[GO:0032403 "protein complex binding" evidence=IEA] [GO:0032389
"MutLalpha complex" evidence=IEA] [GO:0032066 "nucleolus to
nucleoplasm transport" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0030145 "manganese ion binding"
evidence=IEA] [GO:0010259 "multicellular organismal aging"
evidence=IEA] [GO:0010225 "response to UV-C" evidence=IEA]
[GO:0009378 "four-way junction helicase activity" evidence=IEA]
[GO:0009267 "cellular response to starvation" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0005813 "centrosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0001302 "replicative cell aging"
evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=IEA] [GO:0000403 "Y-form
DNA binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002562 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012337
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF01612 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00474 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005813 GO:GO:0005654 GO:GO:0006979
GO:GO:0005730 GO:GO:0042981 GO:GO:0000287 GO:GO:0006284
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0030145
GO:GO:0006310 GO:GO:0009267 SUPFAM:SSF53098 GO:GO:0040009
GO:GO:0008408 GO:GO:0051345 GO:GO:0010259 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
GO:GO:0010225 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0031297
GO:GO:0032389 GO:GO:0032066 OMA:GIEGDQW EMBL:DAAA02060458
EMBL:DAAA02060459 EMBL:DAAA02060460 EMBL:DAAA02060461
EMBL:DAAA02060462 EMBL:DAAA02060463 EMBL:DAAA02060464
EMBL:DAAA02060465 EMBL:DAAA02060466 EMBL:DAAA02060467
EMBL:DAAA02060468 EMBL:DAAA02060469 EMBL:DAAA02060470
EMBL:DAAA02060471 EMBL:DAAA02060472 EMBL:DAAA02060473
EMBL:DAAA02060474 EMBL:DAAA02060475 EMBL:DAAA02060476
EMBL:DAAA02060477 EMBL:DAAA02060478 EMBL:DAAA02060479
EMBL:DAAA02060480 EMBL:DAAA02060481 EMBL:DAAA02060482
EMBL:DAAA02060483 EMBL:DAAA02060484 EMBL:DAAA02060485
EMBL:DAAA02060486 EMBL:DAAA02060487 EMBL:DAAA02060488
EMBL:DAAA02060489 EMBL:DAAA02060490 EMBL:DAAA02060491
EMBL:DAAA02060492 EMBL:DAAA02060493 EMBL:DAAA02060494
IPI:IPI00920936 Ensembl:ENSBTAT00000028778 Uniprot:E1BEE6
Length = 1404
Score = 763 (273.6 bits), Expect = 1.1e-74, P = 1.1e-74
Identities = 163/379 (43%), Positives = 235/379 (62%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LK YFG+S F+P Q VI ++E +RD +VVM TG GKSLC+Q PP+ G LV+S
Sbjct: 503 INCLKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMTTGYGKSLCFQYPPVYAGGIGLVIS 562
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
PLISLM+DQV+ L+ I A FLGSAQ+ + V+ + G ++++++TPE C +
Sbjct: 563 PLISLMEDQVLQLEISSIPACFLGSAQSKNVVED-IKLGKYRIVYLTPE-FCSGNLELLR 620
Query: 121 KL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+L G+ L AVDEAHCISEWGHDFR ++ L L+ VP VALTATA VR DI
Sbjct: 621 QLEANIGITLIAVDEAHCISEWGHDFRNSFRDLGCLKAEFPKVPIVALTATAGSSVREDI 680
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGA----GSIIVYC 235
+ L LK+P +T FDR NL+ ++V + + +L Q ++ + A G I+YC
Sbjct: 681 VCCLNLKDPQITCTGFDRPNLY--LEVGRKTGDILQDLKQFLVCKSSSAWEFEGPTIIYC 738
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
+ K E+++ LK+L + GTYH + R++ H F+RDEI+ ++AT+AFGMGI+K
Sbjct: 739 PSRKMTEQVTAELKKLKLACGTYHAGLSINLRKQVHHRFMRDEIQCVIATVAFGMGINKA 798
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTA 355
D+R VIHYG PK +ESYYQE GR GRDG+ S C + +A ++ E + E R
Sbjct: 799 DIRQVIHYGAPKEMESYYQEIGRAGRDGLQSSCHVLWAPADMNLNRCLLSEIRNEKFRLY 858
Query: 356 IMESLLAAQRYCLLTTCRR 374
++ + ++Y + CRR
Sbjct: 859 KLKMMGKMEKYLYSSKCRR 877
>RGD|1564788 [details] [associations]
symbol:Wrn "Werner syndrome, RecQ helicase-like" species:10116
"Rattus norvegicus" [GO:0000287 "magnesium ion binding"
evidence=ISO] [GO:0000403 "Y-form DNA binding" evidence=ISO]
[GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000723
"telomere maintenance" evidence=ISO] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=ISO] [GO:0001302 "replicative cell
aging" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=ISO] [GO:0004527 "exonuclease activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005813 "centrosome" evidence=ISO] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006259 "DNA metabolic
process" evidence=ISO] [GO:0006260 "DNA replication"
evidence=IEA;ISO] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=ISO] [GO:0006302
"double-strand break repair" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=ISO] [GO:0006979 "response to oxidative stress"
evidence=ISO] [GO:0007569 "cell aging" evidence=ISO] [GO:0008408
"3'-5' exonuclease activity" evidence=IEA;ISO] [GO:0009267
"cellular response to starvation" evidence=ISO] [GO:0009378
"four-way junction helicase activity" evidence=ISO] [GO:0010225
"response to UV-C" evidence=ISO] [GO:0010259 "multicellular
organismal aging" evidence=ISO] [GO:0016887 "ATPase activity"
evidence=ISO] [GO:0030145 "manganese ion binding" evidence=ISO]
[GO:0031297 "replication fork processing" evidence=ISO] [GO:0032066
"nucleolus to nucleoplasm transport" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0040009 "regulation of growth rate"
evidence=ISO] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0042981 "regulation of apoptotic process"
evidence=ISO] [GO:0043138 "3'-5' DNA helicase activity"
evidence=ISO] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0051345 "positive regulation of
hydrolase activity" evidence=ISO] [GO:0051880 "G-quadruplex DNA
binding" evidence=ISO] [GO:0071480 "cellular response to gamma
radiation" evidence=ISO] [GO:0032389 "MutLalpha complex"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002562 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012337 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF01612 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00474
SMART:SM00490 SMART:SM00956 RGD:1564788 GO:GO:0005524 GO:GO:0005813
GO:GO:0005654 GO:GO:0006979 GO:GO:0005730 GO:GO:0042981
GO:GO:0000287 GO:GO:0006284 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0001302 GO:GO:0030145 GO:GO:0006310 GO:GO:0009267
SUPFAM:SSF53098 GO:GO:0040009 GO:GO:0008408 GO:GO:0051345
GO:GO:0010259 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000723 GO:GO:0010225
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000403 GO:GO:0000731 GO:GO:0000405
GO:GO:0009378 GO:GO:0051880 GO:GO:0031297 GO:GO:0032389
GO:GO:0032066 IPI:IPI00960063 ProteinModelPortal:F1LTH9
Ensembl:ENSRNOT00000058805 Uniprot:F1LTH9
Length = 1448
Score = 744 (267.0 bits), Expect = 1.4e-72, P = 1.4e-72
Identities = 163/378 (43%), Positives = 227/378 (60%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LK YFG+ F+P Q VI ++E +RD +VVMATG GKSLC+Q PP+ TGK +V+S
Sbjct: 546 INCLKTYFGHCSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVIS 605
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSV-QTKAETGYFQLLFMTPEKACIIPISFW 119
PLISLM+DQV+ L+ I A LGSAQ + + K ++ Y + + C+
Sbjct: 606 PLISLMEDQVLQLEMSNIPACLLGSAQPKNILGDIKLQSKYKVVEVWFTYQYCMNQFRMI 665
Query: 120 SKL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ G+ L AVDEAHCISEWGHDFR ++ L L+T L VP +AL+ATA+ +R D
Sbjct: 666 QEARCSVGITLIAVDEAHCISEWGHDFRSSFRTLGSLKTALPLVPVIALSATASSSIRED 725
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGV--KVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
II L LK+P++T FDR NL+ V K N Q LV++ + G I+YC
Sbjct: 726 IIRCLNLKDPHITCTGFDRPNLYLEVERKTGNILQDLKPFLVRKTSSAWEFEGPTIIYCP 785
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
+ K E+++ L +L V YH M R++ H F+RDEI+ +VAT+AFGMGI+K D
Sbjct: 786 SRKVTEQVTVELGKLNVACQAYHAGMKISERKDIHHRFLRDEIQCVVATIAFGMGINKAD 845
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
+R VIHYG PK +ESYYQE GR GRDG+ S C L +A ++F E E R
Sbjct: 846 IRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADFNTTRNRLIEIHNEKFRLHK 905
Query: 357 MESLLAAQRYCLLTTCRR 374
++ ++ ++Y + CRR
Sbjct: 906 LKMMVKMEKYLHSSRCRR 923
>TAIR|locus:2197555 [details] [associations]
symbol:RECQL2 "RECQ helicase L2" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016592 "mediator complex" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IC] [GO:0006310 "DNA recombination" evidence=IC]
[GO:0009378 "four-way junction helicase activity" evidence=IDA]
[GO:0043138 "3'-5' DNA helicase activity" evidence=IDA] [GO:0000278
"mitotic cell cycle" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] [GO:0010413 "glucuronoxylan metabolic process"
evidence=RCA] [GO:0045492 "xylan biosynthetic process"
evidence=RCA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0006310 EMBL:AC007654 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0009378 GO:GO:0016592 GO:GO:0043138
EMBL:AJ404471 IPI:IPI00518751 IPI:IPI00846160 RefSeq:NP_001077639.1
RefSeq:NP_174421.2 UniGene:At.40359 HSSP:P15043
ProteinModelPortal:Q9FT73 SMR:Q9FT73 IntAct:Q9FT73 STRING:Q9FT73
PaxDb:Q9FT73 PRIDE:Q9FT73 EnsemblPlants:AT1G31360.1 GeneID:840026
KEGG:ath:AT1G31360 TAIR:At1g31360 InParanoid:Q9FT73 KO:K10899
OMA:ESSQTCH PhylomeDB:Q9FT73 ProtClustDB:CLSN2680338
Genevestigator:Q9FT73 Uniprot:Q9FT73
Length = 705
Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
Identities = 165/377 (43%), Positives = 234/377 (62%)
Query: 9 FGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQD 68
FG S +R QK++I I+ RD LV+MA G GKSLCYQLP ++ G T LVVSPL+SL+QD
Sbjct: 85 FGISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLCYQLPAMLRGGTTLVVSPLLSLIQD 144
Query: 69 QVMSLKQRGINAEFLGSA---QTDSSVQTKAETGY--FQLLFMTPEKACIIPISFWSKLL 123
QVM L GI+A L S + + V E G ++L++TPEK F SKL
Sbjct: 145 QVMGLAALGISAYMLTSTSGKENEKFVYKALEKGEDDLKILYVTPEKVSKSK-RFMSKLE 203
Query: 124 K---AG-VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
K AG + L ++DEAHC S+WGHDFR +YK L L+T VP VALTATAT+KV+ D+
Sbjct: 204 KCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQFPKVPMVALTATATQKVQNDL 263
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINR-GQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I L + ++S +R NLFY V+ + G+ VDE+ + I +S + S IVYC +
Sbjct: 264 IEMLHIPKCVKFVSSVNRPNLFYSVREKSAVGKLVVDEIAEFIRESYSNNESGIVYCFSR 323
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K+ E+I+ L++ G+ A YH M + RE+ H + +++++V+V T+AFGMGI+KPDVR
Sbjct: 324 KECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 383
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
VIH+ K++E+YYQESGR GRDG+ S C L++ ++ + +S + ++
Sbjct: 384 FVIHHSLSKSMETYYQESGRAGRDGLPSECILFFRSADVPR------QSSMVFYEYSGLQ 437
Query: 359 SLLAAQRYCLLTT-CRR 374
+L RYC T CRR
Sbjct: 438 NLYDIVRYCQSKTKCRR 454
>WB|WBGene00006944 [details] [associations]
symbol:wrn-1 species:6239 "Caenorhabditis elegans"
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0018991 "oviposition"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0007049 "cell cycle" evidence=IMP] [GO:0010212
"response to ionizing radiation" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0005694 "chromosome" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006259 "DNA metabolic
process" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005662 "DNA replication factor A complex" evidence=IDA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0008340 GO:GO:0002009
GO:GO:0040007 GO:GO:0018991 GO:GO:0005694 GO:GO:0005654
GO:GO:0002119 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0010171 GO:GO:0040018 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0010212 GO:GO:0007049 GO:GO:0006310 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K10900 EMBL:FO080970
PIR:T16087 RefSeq:NP_495324.2 ProteinModelPortal:Q19546 SMR:Q19546
IntAct:Q19546 MINT:MINT-226609 STRING:Q19546 PaxDb:Q19546
EnsemblMetazoa:F18C5.2 GeneID:174081 KEGG:cel:CELE_F18C5.2
UCSC:F18C5.2 CTD:174081 WormBase:F18C5.2 HOGENOM:HOG000016918
InParanoid:Q19546 OMA:CSGFDRP NextBio:882429 Uniprot:Q19546
Length = 1056
Score = 728 (261.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 161/388 (41%), Positives = 241/388 (62%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
++ L ++FG+ FR Q DV++ ++ +D V+M+TG GKS+CYQLP L+ +VVSP
Sbjct: 216 LNALNEFFGHKGFREKQWDVVRNVLGGKDQFVLMSTGYGKSVCYQLPSLLLNSMTVVVSP 275
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGY-FQLLFMTPEKACIIPISFWS 120
LISLM DQV +L +GI+A L T A + + ++M+PE ++
Sbjct: 276 LISLMNDQVTTLVSKGIDAVKLDGHSTQIEWDQVANNMHRIRFIYMSPE---MVTSQKGL 332
Query: 121 KLL---KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLR--TFLLGVPFVALTATATEKV 175
+LL + + L A+DEAHC+S+WGHDFR Y+ L ++R + L +P +ALTATAT +V
Sbjct: 333 ELLTSCRKHISLLAIDEAHCVSQWGHDFRNSYRHLAEIRNRSDLCNIPMIALTATATVRV 392
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKS--VAG---AGS 230
R D+I +L+L+ P +T SFDRKNL+ V + + ++L +K+ V G G
Sbjct: 393 RDDVIANLRLRKPLITTTSFDRKNLYISV---HSSKDMAEDLGL-FMKTDEVKGRHFGGP 448
Query: 231 IIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGM 290
I+YC T + V++++ L+++GV++ YH + RE+AH F+RD+I +VAT+AFGM
Sbjct: 449 TIIYCQTKQMVDDVNCVLRRIGVRSAHYHAGLTKNQREKAHTDFMRDKITTIVATVAFGM 508
Query: 291 GIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTE 350
GIDKPDVR+VIHYGCP +ESYYQE GR GRDG S+C +++A + F SQ
Sbjct: 509 GIDKPDVRNVIHYGCPNNIESYYQEIGRAGRDGSPSICRVFWAPKDLNTIKFKLRNSQ-- 566
Query: 351 NQRTAIMESL--LAAQRYCLLTT--CRR 374
Q+ ++E+L + Q +LTT CRR
Sbjct: 567 -QKEEVVENLTMMLRQLELVLTTVGCRR 593
>UNIPROTKB|P15043 [details] [associations]
symbol:recQ species:83333 "Escherichia coli K-12"
[GO:0046914 "transition metal ion binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IMP]
[GO:0017116 "single-stranded DNA-dependent ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0017117 "single-stranded
DNA-dependent ATP-dependent DNA helicase complex" evidence=IDA]
[GO:0006310 "DNA recombination" evidence=IEA;IDA;IMP] [GO:0006281
"DNA repair" evidence=IEA;IGI] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA;IGI] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0030894 "replisome" evidence=IDA] [GO:0009432
"SOS response" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0008270 GO:GO:0006281 GO:GO:0046914
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
EMBL:M87049 eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0043590 GO:GO:0009432 GO:GO:0030894
GO:GO:0017116 GO:GO:0017117 EMBL:M30198 HOGENOM:HOG000044388
KO:K03654 TIGRFAMs:TIGR01389 RefSeq:YP_026263.3 RefSeq:YP_491620.1
PDB:1OYW PDB:1OYY PDB:1WUD PDBsum:1OYW PDBsum:1OYY PDBsum:1WUD
ProteinModelPortal:P15043 SMR:P15043 DIP:DIP-10656N IntAct:P15043
MINT:MINT-1223947 EnsemblBacteria:EBESCT00000003276
EnsemblBacteria:EBESCT00000015928 GeneID:12930625 GeneID:948318
KEGG:ecj:Y75_p3356 KEGG:eco:b3822 PATRIC:32123145 EchoBASE:EB0826
EcoGene:EG10833 OMA:YCLSRAK ProtClustDB:PRK11057
BioCyc:EcoCyc:EG10833-MONOMER BioCyc:ECOL316407:JW5855-MONOMER
BioCyc:MetaCyc:EG10833-MONOMER EvolutionaryTrace:P15043
Genevestigator:P15043 Uniprot:P15043
Length = 609
Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
Identities = 156/374 (41%), Positives = 226/374 (60%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L++ FGY FRP Q+++I ++ RDCLVVM TG GKSLCYQ+P L+ +VVSPLIS
Sbjct: 17 LQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV L+ G+ A L S QT V T TG +LL++ PE+ + +F
Sbjct: 77 LMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLD--NFLEH 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L L AVDEAHCIS+WGHDFR EY L +LR +PF+ALTATA + R DI+
Sbjct: 135 LAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVR 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L L +P + I+SFDR N+ Y ++ + + +D+L++ + + +G I+YC + V
Sbjct: 195 LLGLNDPLIQISSFDRPNIRY--MLMEKFKP-LDQLMRYVQEQRGKSG--IIYCNSRAKV 249
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E+ + L+ G+ A YH + + R + F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 250 EDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
H+ P+ +ESYYQE+GR GRDG+ + L+Y ++ A C E + + Q I L
Sbjct: 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR-RCLEEKPQGQLQDIERHKL 368
Query: 362 AAQ-RYCLLTTCRR 374
A + TCRR
Sbjct: 369 NAMGAFAEAQTCRR 382
>TIGR_CMR|GSU_0898 [details] [associations]
symbol:GSU_0898 "ATP-dependent DNA helicase RecQ"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432
HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
RefSeq:NP_951954.1 ProteinModelPortal:Q74ER2 SMR:Q74ER2
GeneID:2687381 KEGG:gsu:GSU0898 PATRIC:22024565
ProtClustDB:CLSK828090 BioCyc:GSUL243231:GH27-885-MONOMER
Uniprot:Q74ER2
Length = 603
Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
Identities = 151/376 (40%), Positives = 222/376 (59%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
++ L+ FGY FRP+Q++++ R+ D V+M TG GKSLCYQ+P LV +V+SP
Sbjct: 6 LAVLRTVFGYRSFRPFQEEIVDRVARGGDTFVLMPTGGGKSLCYQIPSLVRPGVGIVISP 65
Query: 62 LISLMQDQVMSLKQRGINAEFLGSA--QTDSS-VQTKAETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV +L++ G+ A S + +S V + G LL++ PE+ ++ +F
Sbjct: 66 LISLMKDQVDALRENGVAAACYNSTLGERESRRVLARLHGGELDLLYVAPER--LMTDAF 123
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+L + + LFA+DEAHC+S+WGHDFR EY +L +LR VP +ALTATA + R D
Sbjct: 124 LERLREIPIALFAIDEAHCVSQWGHDFRPEYVELGRLRGLFPTVPMIALTATADAQTRGD 183
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L L++ + + FDR N+ Y V + + + F +L + + AG IVYC++
Sbjct: 184 IVTRLGLRDAEMFVTGFDRPNIRYSV--LEKQKPF-RQLEEFLATRPREAG--IVYCLSR 238
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K VEE+++ L+ GV+AG YH + R F+RD+IRV+VAT+AFGMGIDKP+VR
Sbjct: 239 KRVEEVAEKLRAAGVEAGAYHAGLADAERSRVQEAFLRDDIRVVVATVAFGMGIDKPNVR 298
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+HY PK +ESYYQE+GR GRDG+ + L + + Q +
Sbjct: 299 FVVHYDLPKNIESYYQETGRAGRDGLPAEALLLFGYGDIPVSRSLIESGGNPEQVRIELH 358
Query: 359 SLLAAQRYCLLTTCRR 374
L A + CRR
Sbjct: 359 KLNAMVGFAEALVCRR 374
>TIGR_CMR|BA_2818 [details] [associations]
symbol:BA_2818 "ATP-dependent DNA helicase RecQ"
species:198094 "Bacillus anthracis str. Ames" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006268
"DNA unwinding involved in replication" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0009378 "four-way junction helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0005622 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 TIGRFAMs:TIGR00614
GO:GO:0009432 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
TIGRFAMs:TIGR01389 OMA:YCLSRAK RefSeq:NP_845165.1
RefSeq:YP_019461.1 RefSeq:YP_028886.1 ProteinModelPortal:Q81PI6
DNASU:1085972 EnsemblBacteria:EBBACT00000011651
EnsemblBacteria:EBBACT00000017455 EnsemblBacteria:EBBACT00000023670
GeneID:1085972 GeneID:2814571 GeneID:2847794 KEGG:ban:BA_2818
KEGG:bar:GBAA_2818 KEGG:bat:BAS2627 ProtClustDB:CLSK916814
BioCyc:BANT260799:GJAJ-2691-MONOMER
BioCyc:BANT261594:GJ7F-2786-MONOMER Uniprot:Q81PI6
Length = 705
Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
Identities = 154/372 (41%), Positives = 227/372 (61%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L YFGYS FR Q + I+ +++ +D + +M TG GKS+CYQ+P LV T LV+SPLIS
Sbjct: 9 LASYFGYSSFRRGQDETIKNVLDGKDTVCIMPTGGGKSICYQIPALVFEGTTLVISPLIS 68
Query: 65 LMQDQVMSLKQRGINAEFLGSAQ--TDSSVQTK-AETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV +L Q GI+A ++ S+ T+++ + + A+ G+++L ++ PE+ + + F +
Sbjct: 69 LMKDQVDTLVQNGISATYINSSISITEANQRIQLAKQGHYKLFYVAPER--LDSMEFVDQ 126
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDII 180
L+ + + A+DEAHCIS+WGHDFR Y + ++ +L P V ALTATAT +VR DI
Sbjct: 127 LIDMKIPMIAIDEAHCISQWGHDFRPSYLHIHRILDYLPEEPLVLALTATATPQVRDDIC 186
Query: 181 NSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
N+L + + +F+R+NL + V +GQ L I ++ +G I+Y T K
Sbjct: 187 NTLGINQENTIMTTFERENLSFSVI---KGQDRNAYLADYIRQNQKESG--IIYAATRKV 241
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+++ + L + GV YH M R E LF+RDE+ VMVAT AFGMGIDK ++R+V
Sbjct: 242 VDQLYEDLMKAGVSVSKYHAGMSDHDRNEQQELFLRDEVSVMVATSAFGMGIDKSNIRYV 301
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
IHY PK +ESYYQE+GR GRDG+ S C L YA + F +S E++ + +E L
Sbjct: 302 IHYQLPKNMESYYQEAGRAGRDGLDSACILLYASQDVQVQRFLIDQSIGESRFSNELEKL 361
Query: 361 LAAQRYCLLTTC 372
YC C
Sbjct: 362 QNMTDYCHTEQC 373
>WB|WBGene00019334 [details] [associations]
symbol:K02F3.12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
EMBL:FO080195 HSSP:P15043 KO:K10899 OMA:ESSQTCH
RefSeq:NP_001022656.1 RefSeq:NP_001022657.1
ProteinModelPortal:Q9TXJ8 SMR:Q9TXJ8 EnsemblMetazoa:K02F3.12a
GeneID:175246 KEGG:cel:CELE_K02F3.12 UCSC:K02F3.12a CTD:175246
WormBase:K02F3.12a HOGENOM:HOG000044388 InParanoid:Q9TXJ8
NextBio:887386 Uniprot:Q9TXJ8
Length = 631
Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
Identities = 164/383 (42%), Positives = 229/383 (59%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
LK+ F FRP Q+ I ++ K D +V+++TG GKSLCYQLP L+ ALVVSPLIS
Sbjct: 101 LKEQFHLEKFRPLQRAAINAVMSKEDAVVILSTGGGKSLCYQLPALLANGLALVVSPLIS 160
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGY------FQLLFMTPEKACIIP--I 116
L++DQ++ L+ GI++ L +A T + E F+LL++TPEK +
Sbjct: 161 LVEDQILQLRSLGIDSSSL-NANTSKEEAKRVEDAITNKDSKFRLLYVTPEKLAKSKKMM 219
Query: 117 SFWSKLLKAGVC-LFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
+ K L G L A+DE HC S+WGHDFR +Y L+ L+ GVP + LTATAT V
Sbjct: 220 NKLEKSLSVGFLKLIAIDEVHCCSQWGHDFRTDYSFLNVLKRQFKGVPILGLTATATSNV 279
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG--AGSI-I 232
D+ + L ++ A F+R NL Y KV+ + S DE +EI K++ AG I
Sbjct: 280 LDDVKDMLGIQAALTFRAGFNRSNLKY--KVVQKPGS-EDECTEEIAKTIKRDFAGQTGI 336
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
+YC++ D E+++KALK G+KA YH M R AH+ +I +I+V+VAT+AFGMGI
Sbjct: 337 IYCLSRNDCEKVAKALKSHGIKAKHYHAYMEPVDRSGAHQGWISGKIQVIVATVAFGMGI 396
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ 352
DKP+VR VIH+ PK++E+YYQESGR GRDG + C LYY + D + S + +
Sbjct: 397 DKPNVRFVIHHSLPKSIENYYQESGRAGRDGQPATCILYYRLA-----DIFKQSSMVQQE 451
Query: 353 RTAIMESLLAAQRYCL-LTTCRR 374
RT I ++L RY +TCRR
Sbjct: 452 RTGI-QNLYNMVRYAADSSTCRR 473
>DICTYBASE|DDB_G0268512 [details] [associations]
symbol:wrn "Werner syndrome protein" species:44689
"Dictyostelium discoideum" [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00490 SMART:SM00956 dictyBase:DDB_G0268512 GO:GO:0005524
GenomeReviews:CM000150_GR GO:GO:0006260 GO:GO:0006281
EMBL:AAFI02000003 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0005622 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
RefSeq:XP_001732947.1 ProteinModelPortal:B0G0Y4
EnsemblProtists:DDB0238429 GeneID:8616084 KEGG:ddi:DDB_G0268512
OMA:FLFNKTE Uniprot:B0G0Y4
Length = 1136
Score = 714 (256.4 bits), Expect = 8.1e-70, P = 8.1e-70
Identities = 150/372 (40%), Positives = 229/372 (61%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++ LKKYFG FRP Q +VI+ I D + MATG+GKSLC+Q+PPL KTA+VVS
Sbjct: 289 IIEILKKYFGLHSFRPNQLEVIKHTISGGDSFLSMATGTGKSLCFQIPPLYLNKTAIVVS 348
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAE-TGYFQLLFMTPEKACIIPISFW 119
PL+SL+ DQ + LK GI L S SS + + GY+ L+++TPE+ S
Sbjct: 349 PLVSLITDQTLKLKSLGIKVTKLSSDIKSSSKEYELIFKGYYNLVYITPERIINEYQSIG 408
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
+ +CLFA+DEAHCIS+WGH FR Y++L +LR VP +A+TATAT+ + DI
Sbjct: 409 ELVRNEKICLFAIDEAHCISQWGHSFRESYRKLQELRNQFPTVPIMAVTATATKSIESDI 468
Query: 180 INSLKLKNPYVTI--ASFDRKNLFYGV----KVINRGQSFVDELVQEILKSVAG-AGSII 232
IN+L + N + +S +R N++Y V K+++ + +++ E K++ + S I
Sbjct: 469 INNLGIGNGNCKMFKSSKNRPNIYYKVIIKDKLVSNDFKMILDILLETRKTIGVVSNSTI 528
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
+YC TI+ E+++ L +++ YH Q+G K R+E + F+ ++ V+VAT+AFGMGI
Sbjct: 529 IYCTTIQIANELNRFLCDNKIQSNVYHSQLGDKQRDETLKNFLFNKTEVIVATIAFGMGI 588
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ 352
DK DVR +I+YG K++E +YQESGR GRDG+ S+ + Y+ +F K F + N+
Sbjct: 589 DKHDVRLIINYGASKSVEDFYQESGRAGRDGLQSLSLIIYSLQDFVKSSFLLRNNNNYNK 648
Query: 353 RTAIMESLLAAQ 364
++ S ++Q
Sbjct: 649 YSSSSSSSQSSQ 660
>TIGR_CMR|CBU_0472 [details] [associations]
symbol:CBU_0472 "ATP-dependent DNA helicase RecQ"
species:227377 "Coxiella burnetii RSA 493" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043
HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
RefSeq:NP_819507.1 ProteinModelPortal:Q83E59 SMR:Q83E59
GeneID:1208356 KEGG:cbu:CBU_0472 PATRIC:17929635
ProtClustDB:CLSK914091 BioCyc:CBUR227377:GJ7S-469-MONOMER
Uniprot:Q83E59
Length = 601
Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
Identities = 153/376 (40%), Positives = 220/376 (58%)
Query: 2 VSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
+ L++ FGY FRP Q+ +I +I D V+M TG GKSLCYQ+P LV +VVSP
Sbjct: 6 LEVLRQTFGYENFRPLQEKIINSVIAGEDNFVLMPTGGGKSLCYQIPALVREGVGIVVSP 65
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDSSVQ---TKAETGYFQLLFMTPEKACIIPISF 118
LISLMQDQV +L G A S T++ + + LL++ PE+ ++ SF
Sbjct: 66 LISLMQDQVQALNANGAAAALYNSTLTEAEARKNLARLHNNELDLLYIAPER--LMTESF 123
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
S+L + + L A+DEAHC+S+WGHDFR EY +L +LR + VPF+ALTATA ++ R D
Sbjct: 124 LSRLREVKLALVAIDEAHCVSQWGHDFRPEYLRLGELREYFPKVPFIALTATADKQTRQD 183
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
I+ L+L V IASF+R N+ Y ++ + +S+ ++LV + A G IVYC++
Sbjct: 184 ILQRLRLTKANVHIASFNRPNIRY--TLLEKQKSY-NQLVNFLKDRKADFG--IVYCLSR 238
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
VEE++ L+ G A YH + + R + F RD++ ++VAT+AFGMGIDKP+VR
Sbjct: 239 NRVEEVAAKLQADGYSALPYHAGLPAAQRGKTQEAFQRDDVNIIVATIAFGMGIDKPNVR 298
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIME 358
V+HY PK +E YYQE+GR GRDG+ S L Y + A + E ++ +
Sbjct: 299 FVVHYDLPKHIEGYYQETGRAGRDGLPSEALLLYGLRDIAVIKSFIENGNNEIRKRIELH 358
Query: 359 SLLAAQRYCLLTTCRR 374
L + TCRR
Sbjct: 359 KLNCMSAFAEARTCRR 374
>TAIR|locus:2127998 [details] [associations]
symbol:RecQl3 "AT4G35740" species:3702 "Arabidopsis
thaliana" [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS;IDA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IDA]
[GO:0009378 "four-way junction helicase activity" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043138
"3'-5' DNA helicase activity" evidence=IDA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0046872
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
EMBL:AL161588 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG0514 KO:K10901 TIGRFAMs:TIGR00614 GO:GO:0036310
GO:GO:0009378 GO:GO:0008026 EMBL:AL031135 GO:GO:0043138 PIR:T04679
HSSP:P15043 EMBL:AJ404472 EMBL:AK229155 IPI:IPI00541767
IPI:IPI00545081 RefSeq:NP_195299.2 RefSeq:NP_849500.1
UniGene:At.20216 ProteinModelPortal:Q9FT72 SMR:Q9FT72 IntAct:Q9FT72
PaxDb:Q9FT72 PRIDE:Q9FT72 EnsemblPlants:AT4G35740.1 GeneID:829727
KEGG:ath:AT4G35740 TAIR:At4g35740 HOGENOM:HOG000239549
InParanoid:Q9FT72 OMA:YEVRYKD PhylomeDB:Q9FT72
ProtClustDB:CLSN2680292 Genevestigator:Q9FT72 Uniprot:Q9FT72
Length = 713
Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
Identities = 158/387 (40%), Positives = 230/387 (59%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+V L+ +FG++ FR Q + IQ ++ RDC +M TG GKS+CYQ+P L LVVS
Sbjct: 24 LVKLLRWHFGHADFRGKQLEAIQAVVSGRDCFCLMPTGGGKSICYQIPALAKPGIVLVVS 83
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTD---SSVQTKAETGY--FQLLFMTPEKACIIP 115
PLI+LM++QVM+LK++GI AE+L S Q + + ++G +LL++TPE I
Sbjct: 84 PLIALMENQVMALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRLLYVTPE--LIAT 141
Query: 116 ISFWSKLLKA---GVC-LFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATA 171
F KL K G+ L A+DEAHCIS WGHDFR Y+QL LR L VP +ALTATA
Sbjct: 142 KGFMLKLRKLHSRGLLNLIAIDEAHCISSWGHDFRPSYRQLSTLRDSLADVPVLALTATA 201
Query: 172 TEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSI 231
KV+ D+I+SL L+NP V +SF+R N+FY V R + +D ++ + G+I
Sbjct: 202 APKVQKDVIDSLNLRNPLVLKSSFNRPNIFYEV----RYKDLLDNAYTDLGNLLKSCGNI 257
Query: 232 --IVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFG 289
I+YC+ +++S L +G+ + YH + SK R ++ + +++VAT+AFG
Sbjct: 258 CAIIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFG 317
Query: 290 MGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQT 349
MGIDK DVR V H+ PK++ES+YQESGR GRD + S LYY + K ++ S+
Sbjct: 318 MGIDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSVLYYGVDDRKKMEYLLRNSEN 377
Query: 350 ENQRTAIMESLLAAQ--RYCLLTTCRR 374
+ ++ + Q YC + CRR
Sbjct: 378 KKSSSSKKPTSDFEQIVTYCEGSGCRR 404
>TIGR_CMR|SO_4241 [details] [associations]
symbol:SO_4241 "ATP-dependent DNA helicase RecQ"
species:211586 "Shewanella oneidensis MR-1" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043
HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389 OMA:YCLSRAK
RefSeq:NP_719768.1 ProteinModelPortal:Q8E9M8 SMR:Q8E9M8
GeneID:1171845 KEGG:son:SO_4241 PATRIC:23528122
ProtClustDB:CLSK907564 Uniprot:Q8E9M8
Length = 607
Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
Identities = 150/374 (40%), Positives = 229/374 (61%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L + FGY FR Q++VI+R+ DCLV+M TG GKSLCYQLP L+ +VVSPLIS
Sbjct: 17 LAQVFGYRDFRDGQREVIERVCRGEDCLVIMPTGGGKSLCYQLPALMMHGITIVVSPLIS 76
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT-DSSVQT--KAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV SL Q G+NA +L S+Q + S++ + G +LL+++PE+ ++ F +
Sbjct: 77 LMKDQVDSLLQTGVNAAYLNSSQPRELSLEVLRQLHLGELKLLYVSPER--LLTADFIER 134
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
+ + +FA+DEAHCIS+WGHDFR EY L +L+ VP +ALTATA + R +I
Sbjct: 135 MQSLPLSMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPHVPMMALTATADQATRQNICE 194
Query: 182 SLKLKNPYVTIASFDRKNLFYGV-KVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
L + NP+ ++SFDR N+ Y V + +N ++L Q +L+ +G I+YC + +
Sbjct: 195 RLGI-NPFKLLSSFDRPNIRYTVAEKLNAA----NQLRQFLLQQNGSSG--IIYCSSRRR 247
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
V+E+++ L G A YH M + R E F++D+I ++VAT+AFGMGI+K +VR V
Sbjct: 248 VDEVAERLTLQGFHAKAYHAGMTPEERGEVQDSFLKDQIDIVVATVAFGMGINKSNVRFV 307
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESL 360
+HY PK++E+YYQE+GR GRDG+ + ++ + ++ + +S+ Q+ L
Sbjct: 308 VHYDIPKSIEAYYQETGRAGRDGLEAEAFMLFDPADIGRVRHLIEQSEPGPQQQVEFHKL 367
Query: 361 LAAQRYCLLTTCRR 374
+ TCRR
Sbjct: 368 NTMAAFAEAQTCRR 381
>UNIPROTKB|O34748 [details] [associations]
symbol:recQ "Probable ATP-dependent DNA helicase RecQ"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0043590 "bacterial nucleoid" evidence=IDA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0005737 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0043590 GO:GO:0009432 HSSP:P15043
HOGENOM:HOG000044388 EMBL:AF027868 PIR:F69901 RefSeq:NP_389803.1
ProteinModelPortal:O34748 SMR:O34748
EnsemblBacteria:EBBACT00000001699 GeneID:939671 KEGG:bsu:BSU19220
PATRIC:18975693 GenoList:BSU19220 KO:K03654 OMA:HAAYINS
ProtClustDB:CLSK887416 BioCyc:BSUB:BSU19220-MONOMER
TIGRFAMs:TIGR01389 Uniprot:O34748
Length = 591
Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
Identities = 156/376 (41%), Positives = 222/376 (59%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKR-DCLVVMATGSGKSLCYQLPPLVTGKTALVVSP 61
S L YFGY FR Q + I+ + E R + +M TG GKS+CYQ+P L+ T +V+SP
Sbjct: 7 SLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISP 66
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKA---ETGYFQLLFMTPEKACIIPISF 118
LISLM+DQV +L++ GINA ++ S Q++ + + + G ++L ++TPE+ + I F
Sbjct: 67 LISLMKDQVDALEEAGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPER--LTSIEF 124
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRI 177
L V L A+DEAHCIS+WGHDFR Y+ ++ L L P + ALTATAT +V
Sbjct: 125 IRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEILFRELHDKPVIMALTATATPEVHD 184
Query: 178 DIINSLKLKNPYVTIASFDRKNL-FYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
DI L ++ F R+NL F VK N+ + F+DE VQ + AG IVY
Sbjct: 185 DICKQLHIQKENTVYTGFSRENLTFKVVKGENKDR-FIDEYVQNN-RHEAG----IVYTA 238
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
T K+ + I + LK+ V+AG YHG + R+E F+ DE++VMVAT AFGMGIDK +
Sbjct: 239 TRKEADRIYERLKRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKSN 298
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAI 356
+R V+H PK +ESYYQE+GR GRDG+AS C L ++ + F +S+ E ++
Sbjct: 299 IRFVLHAQIPKDMESYYQEAGRAGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQD 358
Query: 357 MESLLAAQRYCLLTTC 372
++ L YC C
Sbjct: 359 LKKLRQMVDYCHTEDC 374
>UNIPROTKB|F1NPI7 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000733 "DNA strand renaturation"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0015630 "microtubule
cytoskeleton" evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0015630
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0000733
GO:GO:0008026 OMA:ESSQTCH EMBL:AADN02006609 IPI:IPI00602593
Ensembl:ENSGALT00000021517 Uniprot:F1NPI7
Length = 661
Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
Identities = 158/383 (41%), Positives = 220/383 (57%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
+ L+ F FR Q + + + +D +VM TG GKSLCYQLP + + LV+ PL
Sbjct: 81 TALQNKFKLPKFRSLQLETVNATMAGKDIFLVMPTGGGKSLCYQLPAVCSDGFTLVICPL 140
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSV-----QTKAETGYFQLLFMTPEKACIIPIS 117
ISLM+DQ+M L Q GI+A L ++ + V Q +LL++TPEK +
Sbjct: 141 ISLMEDQLMVLDQLGISATLLNASSSKEHVKWVHAQMLDRNSQLKLLYVTPEKIAKSKM- 199
Query: 118 FWSKLLKA--GVCL--FAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATE 173
F SKL KA CL AVDE HC S+WGHDFR +YK L L+ P + LTATAT
Sbjct: 200 FMSKLEKAYQAGCLARIAVDEVHCCSQWGHDFRPDYKSLGILKRQFPCAPLIGLTATATN 259
Query: 174 KVRIDIINSLKLKNPYVTIASFDRKNLFYGVK-VINRGQSFVDELVQEILKSVAGAGSII 232
V D N L ++ ASF+R NL+Y V+ + + F++++V+ I G I
Sbjct: 260 HVLKDAQNILHIQKCITFTASFNRPNLYYEVRHKPSNNEDFIEDIVKLINGRYKGLSGI- 318
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
VYC + KD E+++ +L++LG+KAGTYH M +K + + H+ + ++I+V+VAT+AFGMGI
Sbjct: 319 VYCFSQKDSEQVTVSLQKLGIKAGTYHANMDAKYKTKVHKGWAANQIQVVVATVAFGMGI 378
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ 352
DKPDVR VIH+ K++E+YYQESGR GRD + C LYY F GD + S +
Sbjct: 379 DKPDVRFVIHHSMSKSMENYYQESGRAGRDDQKADCILYYG---F--GDIFRISSMVVME 433
Query: 353 RTAIMESLLAAQRYCL-LTTCRR 374
E L YC + CRR
Sbjct: 434 NVG-QEKLYDMVSYCQNMNKCRR 455
>TAIR|locus:2180255 [details] [associations]
symbol:RECQSIM "RECQ helicase SIM" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006281 "DNA repair" evidence=IDA] [GO:0043138 "3'-5' DNA
helicase activity" evidence=IDA] [GO:0006270 "DNA replication
initiation" evidence=RCA] [GO:0006275 "regulation of DNA
replication" evidence=RCA] [GO:0051726 "regulation of cell cycle"
evidence=RCA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR009060 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:AC007478
InterPro:IPR015940 PROSITE:PS50030 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 eggNOG:COG0514
TIGRFAMs:TIGR00614 GO:GO:0008026 GO:GO:0043138 EMBL:AC069556
HSSP:P15043 EMBL:AJ404475 EMBL:AY059754 EMBL:AY133823
IPI:IPI00537732 RefSeq:NP_568499.1 UniGene:At.10179
ProteinModelPortal:Q9FT69 SMR:Q9FT69 IntAct:Q9FT69
EnsemblPlants:AT5G27680.1 GeneID:832830 KEGG:ath:AT5G27680
TAIR:At5g27680 HOGENOM:HOG000084012 InParanoid:Q9FT69 KO:K10900
OMA:CRAKILV PhylomeDB:Q9FT69 ProtClustDB:CLSN2689878
Genevestigator:Q9FT69 Uniprot:Q9FT69
Length = 858
Score = 460 (167.0 bits), Expect = 9.8e-66, Sum P(2) = 9.8e-66
Identities = 99/214 (46%), Positives = 137/214 (64%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
S L+ FG S R +Q++ + + +DCLV+ ATGSGKSLC+Q+P L+TGK +V+SPL
Sbjct: 158 SILRNRFGISSLRSFQREALSTWVAHKDCLVLAATGSGKSLCFQIPALLTGKVVVVISPL 217
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKL 122
ISLM DQ + L + ++A FLGS Q D+ ++ KA G +Q++++ PE + I KL
Sbjct: 218 ISLMHDQCLKLSRHKVSACFLGSGQLDNCIEEKAMQGMYQIIYVCPETVVRL-IKPLQKL 276
Query: 123 LKA-GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRT--------FL-LGVPFVALTATAT 172
K G+ LFA+DEAHC+S+WGHDFR Y++L LR FL VP +ALTATAT
Sbjct: 277 AKTHGIALFAIDEAHCVSKWGHDFRPHYRKLSVLRENFCASNLEFLEYDVPIMALTATAT 336
Query: 173 EKVRIDIINSLKL-KNPYVTIASFDRKNLFYGVK 205
V+ DI+ SL L K + + SF R NL + VK
Sbjct: 337 VNVQEDILESLHLSKETKIVLTSFFRPNLQFSVK 370
Score = 243 (90.6 bits), Expect = 9.8e-66, Sum P(2) = 9.8e-66
Identities = 55/146 (37%), Positives = 87/146 (59%)
Query: 229 GSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAF 288
G I+Y T K+ I+K L +G+KA Y+ + K + H+ F ++++V+VAT+AF
Sbjct: 498 GLTIIYVPTRKESVNIAKYLCGVGLKAAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAF 557
Query: 289 GMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQ 348
GMGIDK +VR +IHYG ++LE+YYQE+GR GRDG + C LY ++ ++ +
Sbjct: 558 GMGIDKKNVRKIIHYGWLQSLEAYYQEAGRAGRDGELAECVLY---ADLSRAPTLLPSRR 614
Query: 349 TENQRTAIMESLLAAQRYCLLTT-CR 373
++ Q + L RY + T+ CR
Sbjct: 615 SKEQTEQAYKMLSDCFRYGMNTSQCR 640
>DICTYBASE|DDB_G0292130 [details] [associations]
symbol:blm "Bloom syndrome protein" species:44689
"Dictyostelium discoideum" [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA;ISS] [GO:0006281 "DNA repair" evidence=IEA;ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IC] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
dictyBase:DDB_G0292130 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000155_GR EMBL:AAFI02000187 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 eggNOG:COG0514 KO:K10901
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
RefSeq:XP_629849.1 ProteinModelPortal:Q54DM3 STRING:Q54DM3
EnsemblProtists:DDB0233082 GeneID:8628529 KEGG:ddi:DDB_G0292130
InParanoid:Q54DM3 OMA:IANCEAS ProtClustDB:CLSZ2846594
Uniprot:Q54DM3
Length = 1259
Score = 677 (243.4 bits), Expect = 1.4e-65, P = 1.4e-65
Identities = 155/384 (40%), Positives = 227/384 (59%)
Query: 6 KKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISL 65
+ FG+ VFR Q+++I +E D V+M TG GKSLCYQ+P L +V+SPLISL
Sbjct: 519 RSMFGFHVFRENQREIINSTLEGNDTFVLMPTGGGKSLCYQIPALYQKGLTIVISPLISL 578
Query: 66 MQDQVMSLKQRGINAEFLGSA-QTDSSVQT----KAETGYFQLLFMTPEKACIIP--ISF 118
+ DQV L+ G A L SA +D+++ ++ + +LL++TPE+ I
Sbjct: 579 INDQVEFLETLGYPAAALSSAVSSDAAIDVYKDIRSNSPKIRLLYLTPERVVKSDSLIEI 638
Query: 119 WSKLLKAGV-CLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
+ L + G+ +DEAHC+S+WGHDFR +YK+L LR VP +ALTATATE+VR
Sbjct: 639 LANLDQKGLFSRIVIDEAHCVSQWGHDFRPDYKELSILRRKFPKVPILALTATATERVRN 698
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
D+I +L ++NP SF+R NL Y +V+ + + VD++ + + S S IVYC++
Sbjct: 699 DVIYNLSMRNPVCFKQSFNRPNLIY--QVLKKTKQVVDDM-SKFIHSTYPDKSGIVYCIS 755
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
D E ++K L++L + A YH + + R + + + I+V+VAT+AFGMGI+K DV
Sbjct: 756 KYDCENVAKRLRELKISAAHYHAGLENDERAKVQANWQKGRIKVIVATIAFGMGINKADV 815
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD------FYCGESQTEN 351
R VIH+ PK+LE YYQESGR GRDG S C LY++ ++ + D F G+ + N
Sbjct: 816 RFVIHHSVPKSLEGYYQESGRAGRDGGISHCLLYFSWADKLRNDLLIQNSFTSGQGSSHN 875
Query: 352 QRTAIMESLLAAQRYCLLTT-CRR 374
R +SL YC T CRR
Sbjct: 876 TRET-RDSLNKMVNYCENETDCRR 898
>UNIPROTKB|Q9KVF0 [details] [associations]
symbol:VC_0196 "ATP-dependent DNA helicase RecQ"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043 KO:K03654
TIGRFAMs:TIGR01389 OMA:YCLSRAK ProtClustDB:PRK11057 PIR:E82351
RefSeq:NP_229853.2 ProteinModelPortal:Q9KVF0 SMR:Q9KVF0
DNASU:2614560 GeneID:2614560 KEGG:vch:VC0196 PATRIC:20079438
Uniprot:Q9KVF0
Length = 620
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 149/375 (39%), Positives = 223/375 (59%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L + FGY FR Q++VI+ + RD LV+M TG GKSLCYQ+P LV LV+SPLIS
Sbjct: 29 LHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLIS 88
Query: 65 LMQDQVMSLKQRGINAEFLGS--AQTDS-SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV LK G+ AE + S A+ + ++ + G +LL+++PE+ ++ F +
Sbjct: 89 LMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPER--VLTAEFIER 146
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +L+ VP +ALTATA + R DI+
Sbjct: 147 LSHLPLAMIAVDEAHCISQWGHDFRPEYASLGQLKQRFPNVPVMALTATADDATRHDIMQ 206
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L+L P+ + SFDR N+ Y ++ + + V ++++ L++ G II YC + K V
Sbjct: 207 RLQLNEPHQYLGSFDRPNIRY--MLVEKHKP-VSQVIR-YLETQRGQCGII-YCGSRKKV 261
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E +++ L ++A +YH M + R F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 262 EMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVV 321
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYY--ARSNFAKGDFYCGESQTENQRTAIMES 359
H+ P+ +ESYYQE+GR GRDG+ + + Y A N+ + E Q+
Sbjct: 322 HFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLRR--MLDEKPDGAQKQVESHK 379
Query: 360 LLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 380 LTAMGAFAEAQTCRR 394
>TIGR_CMR|VC_0196 [details] [associations]
symbol:VC_0196 "ATP-dependent DNA helicase RecQ"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0009432 HSSP:P15043 KO:K03654
TIGRFAMs:TIGR01389 OMA:YCLSRAK ProtClustDB:PRK11057 PIR:E82351
RefSeq:NP_229853.2 ProteinModelPortal:Q9KVF0 SMR:Q9KVF0
DNASU:2614560 GeneID:2614560 KEGG:vch:VC0196 PATRIC:20079438
Uniprot:Q9KVF0
Length = 620
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 149/375 (39%), Positives = 223/375 (59%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L + FGY FR Q++VI+ + RD LV+M TG GKSLCYQ+P LV LV+SPLIS
Sbjct: 29 LHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLIS 88
Query: 65 LMQDQVMSLKQRGINAEFLGS--AQTDS-SVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV LK G+ AE + S A+ + ++ + G +LL+++PE+ ++ F +
Sbjct: 89 LMKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPER--VLTAEFIER 146
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + + AVDEAHCIS+WGHDFR EY L +L+ VP +ALTATA + R DI+
Sbjct: 147 LSHLPLAMIAVDEAHCISQWGHDFRPEYASLGQLKQRFPNVPVMALTATADDATRHDIMQ 206
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L+L P+ + SFDR N+ Y ++ + + V ++++ L++ G II YC + K V
Sbjct: 207 RLQLNEPHQYLGSFDRPNIRY--MLVEKHKP-VSQVIR-YLETQRGQCGII-YCGSRKKV 261
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
E +++ L ++A +YH M + R F RD+++++VAT+AFGMGI+KP+VR V+
Sbjct: 262 EMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVV 321
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLYY--ARSNFAKGDFYCGESQTENQRTAIMES 359
H+ P+ +ESYYQE+GR GRDG+ + + Y A N+ + E Q+
Sbjct: 322 HFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADMNWLRR--MLDEKPDGAQKQVESHK 379
Query: 360 LLAAQRYCLLTTCRR 374
L A + TCRR
Sbjct: 380 LTAMGAFAEAQTCRR 394
>TAIR|locus:2074429 [details] [associations]
symbol:RECQI1 "RECQ helicase l1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0042631 "cellular response to water deprivation" evidence=IEP]
[GO:0070417 "cellular response to cold" evidence=IEP] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
GO:GO:0070417 GO:GO:0042631 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AC012393 eggNOG:COG0514 KO:K10901
TIGRFAMs:TIGR00614 GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388
EMBL:AJ404470 IPI:IPI00524157 RefSeq:NP_187225.2 UniGene:At.10170
UniGene:At.49591 ProteinModelPortal:Q9FT74 SMR:Q9FT74
EnsemblPlants:AT3G05740.1 GeneID:819743 KEGG:ath:AT3G05740
TAIR:At3g05740 InParanoid:Q9FT74 OMA:RFVIHNT PhylomeDB:Q9FT74
ProtClustDB:CLSN2690733 Genevestigator:Q9FT74 Uniprot:Q9FT74
Length = 606
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 157/382 (41%), Positives = 225/382 (58%)
Query: 9 FGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQD 68
FG VFRP Q + +E++DC V+M TG GKSLCYQLP + +V+SPL+SL+QD
Sbjct: 202 FGNKVFRPLQHQACRASMERKDCFVLMPTGGGKSLCYQLPATLKAGVTIVISPLLSLIQD 261
Query: 69 QVMSLKQR-GINAEFLGSAQTDSSV-----QTKAETGYFQLLFMTPEKACIIPISFWSKL 122
Q+++L + GI A FL S QT S + + + +LL++TPEK SF L
Sbjct: 262 QIVALNLKFGIPATFLNSQQTSSQAAAVLQELRRDNPSCKLLYVTPEKIAGSS-SFLETL 320
Query: 123 L---KAGVCL-FAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
+ G+ F VDEAHC+S+WGHDFR +Y++L L+ VP +ALTATATE V D
Sbjct: 321 RCLDRKGLLAGFVVDEAHCVSQWGHDFRPDYRELGCLKQNFPRVPVMALTATATESVCQD 380
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
++ SL++ V SFDR NL Y +VI + + + +L QE+L+ S IVYC++
Sbjct: 381 VLKSLRIPRAPVLKMSFDRINLKY--EVIVKTKEPLKQL-QELLRDRFKDQSGIVYCLSK 437
Query: 239 KDVEEISKALKQ-LGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
+ +++K L + VK YH + +K R + R + E+R++ AT+AFGMGIDK DV
Sbjct: 438 SECVDVAKFLNEKCKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMGIDKADV 497
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYC----GESQTENQR 353
R VIH K +ESYYQESGR GRDG+ + C Y + +F++ C G+ + ++
Sbjct: 498 RFVIHNTLSKAVESYYQESGRAGRDGLQAQCICLYQKKDFSR--VVCMLRNGQGRNMDRF 555
Query: 354 TAIMESLLAAQRYC-LLTTCRR 374
+ M Q+YC L T CRR
Sbjct: 556 KSAMAQAKKMQQYCELKTECRR 577
>RGD|1311071 [details] [associations]
symbol:Recql "RecQ protein-like (DNA helicase Q1-like)"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0015630 "microtubule cytoskeleton"
evidence=IEA;ISO] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 RGD:1311071 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
KO:K10899 HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654
EMBL:BC079026 IPI:IPI00366306 RefSeq:NP_001012098.1
UniGene:Rn.203166 ProteinModelPortal:Q6AYJ1 SMR:Q6AYJ1
STRING:Q6AYJ1 PRIDE:Q6AYJ1 Ensembl:ENSRNOT00000065576 GeneID:312824
KEGG:rno:312824 UCSC:RGD:1311071 NextBio:665291 ArrayExpress:Q6AYJ1
Genevestigator:Q6AYJ1 GermOnline:ENSRNOG00000012602 Uniprot:Q6AYJ1
Length = 621
Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
Identities = 154/381 (40%), Positives = 221/381 (58%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ F FRP Q + + + ++D +VM TG GKSLCYQLP L + LV+ PLIS
Sbjct: 83 LRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPALCSDGFTLVICPLIS 142
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQ---TKA--ETGYFQLLFMTPEKACIIPISFW 119
LM+DQ+M L+Q GI+A L S+ + V+ T+ + + +L+++TPEK + F
Sbjct: 143 LMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNSHLKLIYVTPEKIAKSKM-FM 201
Query: 120 SKLLKA---G-VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
S+L KA G + AVDE HC S+WGHDFR +YK L L+ + + LTATAT V
Sbjct: 202 SRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFPNISLIGLTATATNHV 261
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVI-NRGQSFVDELVQEILKSVAGAGSIIVY 234
D L ++ ASF+R NL+Y V+ + + F++ + I G II Y
Sbjct: 262 LKDAQKILCVEKCLTFTASFNRPNLYYEVRQKPSSAEDFIENIANLINGRYKGKSGII-Y 320
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C + KD E+++ +L++LGV+AGTYH M + R + H + +E++V+VAT+AFGMGIDK
Sbjct: 321 CFSQKDSEQVTISLQKLGVRAGTYHANMEPEDRTKVHTQWSANELQVVVATVAFGMGIDK 380
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
PDVR VIH+ K++E+YYQESGR GRD + C LYY F GD + S +
Sbjct: 381 PDVRFVIHHSMSKSMENYYQESGRAGRDDWRADCILYYG---F--GDIFRISSMVVMENV 435
Query: 355 AIMESLLAAQRYCL-LTTCRR 374
+ L YC ++ CRR
Sbjct: 436 G-QQKLYEMVSYCQNISKCRR 455
>UNIPROTKB|Q6AYJ1 [details] [associations]
symbol:Recql "ATP-dependent DNA helicase Q1" species:10116
"Rattus norvegicus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 RGD:1311071
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
KO:K10899 HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654
EMBL:BC079026 IPI:IPI00366306 RefSeq:NP_001012098.1
UniGene:Rn.203166 ProteinModelPortal:Q6AYJ1 SMR:Q6AYJ1
STRING:Q6AYJ1 PRIDE:Q6AYJ1 Ensembl:ENSRNOT00000065576 GeneID:312824
KEGG:rno:312824 UCSC:RGD:1311071 NextBio:665291 ArrayExpress:Q6AYJ1
Genevestigator:Q6AYJ1 GermOnline:ENSRNOG00000012602 Uniprot:Q6AYJ1
Length = 621
Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
Identities = 154/381 (40%), Positives = 221/381 (58%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ F FRP Q + + + ++D +VM TG GKSLCYQLP L + LV+ PLIS
Sbjct: 83 LRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPALCSDGFTLVICPLIS 142
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQ---TKA--ETGYFQLLFMTPEKACIIPISFW 119
LM+DQ+M L+Q GI+A L S+ + V+ T+ + + +L+++TPEK + F
Sbjct: 143 LMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNSHLKLIYVTPEKIAKSKM-FM 201
Query: 120 SKLLKA---G-VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
S+L KA G + AVDE HC S+WGHDFR +YK L L+ + + LTATAT V
Sbjct: 202 SRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFPNISLIGLTATATNHV 261
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVI-NRGQSFVDELVQEILKSVAGAGSIIVY 234
D L ++ ASF+R NL+Y V+ + + F++ + I G II Y
Sbjct: 262 LKDAQKILCVEKCLTFTASFNRPNLYYEVRQKPSSAEDFIENIANLINGRYKGKSGII-Y 320
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C + KD E+++ +L++LGV+AGTYH M + R + H + +E++V+VAT+AFGMGIDK
Sbjct: 321 CFSQKDSEQVTISLQKLGVRAGTYHANMEPEDRTKVHTQWSANELQVVVATVAFGMGIDK 380
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
PDVR VIH+ K++E+YYQESGR GRD + C LYY F GD + S +
Sbjct: 381 PDVRFVIHHSMSKSMENYYQESGRAGRDDWRADCILYYG---F--GDIFRISSMVVMENV 435
Query: 355 AIMESLLAAQRYCL-LTTCRR 374
+ L YC ++ CRR
Sbjct: 436 G-QQKLYEMVSYCQNISKCRR 455
>UNIPROTKB|A0JN36 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0000733 "DNA strand renaturation"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0015630
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0000733 GO:GO:0008026 KO:K10899 OMA:ESSQTCH
HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654 OrthoDB:EOG4THVSK
EMBL:DAAA02014122 EMBL:DAAA02014123 EMBL:BC126495 IPI:IPI00692480
RefSeq:NP_001071459.1 UniGene:Bt.13736 SMR:A0JN36 STRING:A0JN36
Ensembl:ENSBTAT00000028079 GeneID:533006 KEGG:bta:533006
InParanoid:A0JN36 NextBio:20875874 Uniprot:A0JN36
Length = 649
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 154/381 (40%), Positives = 217/381 (56%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ F FRP Q + I + ++ +VM TG GKSLCYQLP L + LV+ PLIS
Sbjct: 83 LQNVFKLQKFRPLQLETINVTMSGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLIS 142
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQ-TKAE----TGYFQLLFMTPEKACIIPISFW 119
LM+DQ+M LKQ GI+A L ++ V+ AE +L+++TPEK + F
Sbjct: 143 LMEDQLMVLKQLGISATMLNASSPKEHVKWVHAEMVNKNSKLKLIYVTPEKIAKSKM-FM 201
Query: 120 SKLLKA----GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
S+L KA AVDE HC S+WGHDFR +YK L L+ + LTATAT V
Sbjct: 202 SRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATSHV 261
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVI-NRGQSFVDELVQEILKSVAGAGSIIVY 234
D L ++ + ASF+R NL+Y V+ + + F++++V+ I G II Y
Sbjct: 262 LKDAQKILCVEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGII-Y 320
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C + KD E+++ +L++LG+ AG YH M + + + HR + +EI+V+VAT+AFGMGIDK
Sbjct: 321 CFSQKDSEQVTISLQKLGIPAGAYHANMEPEDKTKVHRRWAANEIQVVVATVAFGMGIDK 380
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
PDVR VIH+ K++E+YYQESGR GRD + + C LYY F GD + S +
Sbjct: 381 PDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYG---F--GDIFRISSMVVMENV 435
Query: 355 AIMESLLAAQRYCL-LTTCRR 374
+ L YC + CRR
Sbjct: 436 G-QQKLYEMVSYCQNINKCRR 455
>FB|FBgn0002906 [details] [associations]
symbol:Blm "Bloom syndrome helicase ortholog" species:7227
"Drosophila melanogaster" [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IGI;IMP] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0000731 "DNA
synthesis involved in DNA repair" evidence=IMP] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0045003 "double-strand break repair via synthesis-dependent
strand annealing" evidence=IMP] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] [GO:0000732 "strand displacement" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000403 "Y-form DNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0000733 "DNA strand renaturation"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IMP] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:1901291 "negative
regulation of double-strand break repair via single-strand
annealing" evidence=IMP] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00490 SMART:SM00956 EMBL:AE014297
GO:GO:0005524 GO:GO:0005634 GO:GO:0006260 Gene3D:1.10.10.10
InterPro:IPR011991 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0007131 GO:GO:0045003 eggNOG:COG0514
GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 EMBL:U92536 RefSeq:NP_524319.2
UniGene:Dm.2444 ProteinModelPortal:Q9VGI8 SMR:Q9VGI8 DIP:DIP-23386N
MINT:MINT-784091 STRING:Q9VGI8 PaxDb:Q9VGI8 PRIDE:Q9VGI8
EnsemblMetazoa:FBtr0082434 GeneID:41366 KEGG:dme:Dmel_CG6920
CTD:41366 FlyBase:FBgn0002906 InParanoid:Q9VGI8 OMA:KISSSAR
OrthoDB:EOG4JDFNV PhylomeDB:Q9VGI8 ChiTaRS:BLM GenomeRNAi:41366
NextBio:823498 Bgee:Q9VGI8 GermOnline:CG6920 GO:GO:0000403
GO:GO:0000733 GO:GO:0000731 GO:GO:1901291 GO:GO:0000732
Uniprot:Q9VGI8
Length = 1487
Score = 660 (237.4 bits), Expect = 1.5e-63, P = 1.5e-63
Identities = 154/378 (40%), Positives = 221/378 (58%)
Query: 9 FGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQD 68
FG FRP Q VI + DC V+M TG GKSLCYQLP ++T +V+SPL SL+ D
Sbjct: 733 FGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVISPLKSLIFD 792
Query: 69 QVMSLKQRGINAEFLGSAQTDSSVQT-----KAETGYFQLLFMTPEKACIIPISFWSKL- 122
Q+ L I A+ L Q + V +++ +LL++TPEK F L
Sbjct: 793 QINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISS-SARFQDTLD 851
Query: 123 -LKAG--VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
L + + F +DEAHC+S+WGHDFR +YK+L L+ VP +ALTATAT +VR+DI
Sbjct: 852 TLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIALTATATPRVRLDI 911
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
+ L LKN ++SF+R NL Y V + +G S +D+ + ++S S I+YC++ K
Sbjct: 912 LAQLNLKNCKWFLSSFNRSNLRYRV-LPKKGVSTLDD-ISRYIRSKPQHFSGIIYCLSRK 969
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
+ +E SK + + GV+A +YH + RE + ++ ++RV+ AT+AFGMGIDKPDVR
Sbjct: 970 ECDETSKKMCKDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVICATVAFGMGIDKPDVRF 1029
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA--KGDFYCGESQTENQRTAIM 357
V+HY PK++E YYQE+GR GRDG + C LYY S+ K ++ N + +
Sbjct: 1030 VLHYSLPKSIEGYYQEAGRAGRDGDVADCILYYNYSDMLRIKKMLDSDKALQYNVKKIHV 1089
Query: 358 ESLLAAQRYCL-LTTCRR 374
++L YC LT CRR
Sbjct: 1090 DNLYRIVGYCENLTDCRR 1107
>UNIPROTKB|P46063 [details] [associations]
symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
"Homo sapiens" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000733 "DNA strand
renaturation" evidence=IDA] [GO:0003678 "DNA helicase activity"
evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA;TAS]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0015630 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310 GO:GO:0004003
EMBL:CH471094 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0000733
EMBL:AC006559 KO:K10899 OMA:ESSQTCH HOGENOM:HOG000044388
EMBL:L36140 EMBL:D37984 EMBL:BT007119 EMBL:AK291627 EMBL:BC001052
IPI:IPI00178431 PIR:A58836 RefSeq:NP_002898.2 RefSeq:NP_116559.1
UniGene:Hs.235069 PDB:2V1X PDB:2WWY PDBsum:2V1X PDBsum:2WWY
ProteinModelPortal:P46063 SMR:P46063 DIP:DIP-29216N IntAct:P46063
STRING:P46063 PhosphoSite:P46063 DMDM:218512113 PaxDb:P46063
PRIDE:P46063 DNASU:5965 Ensembl:ENST00000421138
Ensembl:ENST00000444129 GeneID:5965 KEGG:hsa:5965 UCSC:uc001rex.3
CTD:5965 GeneCards:GC12M021621 H-InvDB:HIX0010478 HGNC:HGNC:9948
HPA:CAB009743 HPA:HPA030960 MIM:600537 neXtProt:NX_P46063
PharmGKB:PA34315 HOVERGEN:HBG057654 InParanoid:P46063
PhylomeDB:P46063 ChEMBL:CHEMBL1293236 ChiTaRS:RECQL
EvolutionaryTrace:P46063 GenomeRNAi:5965 NextBio:23220
ArrayExpress:P46063 Bgee:P46063 CleanEx:HS_RECQL
Genevestigator:P46063 GermOnline:ENSG00000004700 Uniprot:P46063
Length = 649
Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
Identities = 153/381 (40%), Positives = 217/381 (56%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ F FRP Q + I + ++ +VM TG GKSLCYQLP L + LV+ PLIS
Sbjct: 83 LQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLIS 142
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQ-TKAE----TGYFQLLFMTPEKACIIPISFW 119
LM+DQ+M LKQ GI+A L ++ + V+ AE +L+++TPEK + F
Sbjct: 143 LMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKM-FM 201
Query: 120 SKLLKA----GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
S+L KA AVDE HC S+WGHDFR +YK L L+ + LTATAT V
Sbjct: 202 SRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHV 261
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVI-NRGQSFVDELVQEILKSVAGAGSIIVY 234
D L ++ + ASF+R NL+Y V+ + + F++++V+ I G II Y
Sbjct: 262 LTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGII-Y 320
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C + KD E+++ +L+ LG+ AG YH + + + HR + +EI+V+VAT+AFGMGIDK
Sbjct: 321 CFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDK 380
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
PDVR VIH+ K++E+YYQESGR GRD + + C LYY F GD + S +
Sbjct: 381 PDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYG---F--GDIFRISSMVVMENV 435
Query: 355 AIMESLLAAQRYCL-LTTCRR 374
+ L YC ++ CRR
Sbjct: 436 G-QQKLYEMVSYCQNISKCRR 455
>MGI|MGI:103021 [details] [associations]
symbol:Recql "RecQ protein-like" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000733 "DNA
strand renaturation" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=ISO] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF09382 PROSITE:PS51194
SMART:SM00490 MGI:MGI:103021 GO:GO:0005524 GO:GO:0005634
GO:GO:0015630 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0000733 EMBL:CH466572 KO:K10899 OMA:ESSQTCH
HOGENOM:HOG000044388 CTD:5965 HOVERGEN:HBG057654 EMBL:AB017104
EMBL:AB017105 EMBL:AK137589 EMBL:AK164344 IPI:IPI00129401
IPI:IPI00230278 RefSeq:NP_001191836.1 RefSeq:NP_075529.2
UniGene:Mm.27407 ProteinModelPortal:Q9Z129 SMR:Q9Z129 STRING:Q9Z129
PhosphoSite:Q9Z129 PaxDb:Q9Z129 PRIDE:Q9Z129
Ensembl:ENSMUST00000032370 Ensembl:ENSMUST00000111803 GeneID:19691
KEGG:mmu:19691 InParanoid:Q3TPI5 OrthoDB:EOG4THVSK NextBio:297024
Bgee:Q9Z129 CleanEx:MM_RECQL Genevestigator:Q9Z129
GermOnline:ENSMUSG00000030243 Uniprot:Q9Z129
Length = 648
Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
Identities = 157/381 (41%), Positives = 219/381 (57%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ F FRP Q + I + ++D +VM TG GKSLCYQLP L + LV+ PLIS
Sbjct: 83 LQNVFKLQKFRPLQLETINVTMARKDIFLVMPTGGGKSLCYQLPALCSDGFTLVICPLIS 142
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQ-TKAE----TGYFQLLFMTPEKACIIPISFW 119
LM+DQ+M LKQ GI+A L ++ + V+ AE +L+++TPEK + F
Sbjct: 143 LMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSQLKLIYVTPEKIAKSKM-FM 201
Query: 120 SKLLKA---G-VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
S+L KA G + AVDE HC S+WGHDFR +YK L L+ + LTATAT V
Sbjct: 202 SRLEKAYEAGRLTGAAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLMGLTATATNHV 261
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVI-NRGQSFVDELVQEILKSVAGAGSIIVY 234
D+ L + ASF+R NLFY V+ + + F +++V+ I G II Y
Sbjct: 262 LKDVQKILCVGKCLTFTASFNRPNLFYEVRQKPSSAEDFTEDIVKLINGRYKGQSGII-Y 320
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C + KD E+I+ +L++LG+ AGTYH M + + + H + +E++V+VAT+AFGMGIDK
Sbjct: 321 CFSQKDSEQITISLQKLGIHAGTYHANMEPEDKTKVHTQWSANELQVVVATVAFGMGIDK 380
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
PDVR VIH+ K++E+YYQESGR GRD + C LYY F GD + S +
Sbjct: 381 PDVRFVIHHSMSKSMENYYQESGRAGRDDSRADCILYYG---F--GDIFRISSMVVMENV 435
Query: 355 AIMESLLAAQRYCL-LTTCRR 374
+ L YC ++ CRR
Sbjct: 436 G-QQKLYEMVSYCQNVSKCRR 455
>UNIPROTKB|F1SR01 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0015630 "microtubule cytoskeleton" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000733 "DNA strand
renaturation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0015630 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0000733
OMA:ESSQTCH EMBL:CU633485 EMBL:CU457490 Ensembl:ENSSSCT00000000624
Uniprot:F1SR01
Length = 649
Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
Identities = 153/381 (40%), Positives = 217/381 (56%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ F FRP Q + I + ++ +VM TG GKSLCYQLP L + LV+ PLIS
Sbjct: 83 LQNIFKLQKFRPLQLETINVTMSGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLIS 142
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQ-TKAE----TGYFQLLFMTPEKACIIPISFW 119
LM+DQ+M LKQ GI+A L ++ + V+ AE +L+++TPEK + F
Sbjct: 143 LMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSKLKLIYVTPEKIAKSKM-FM 201
Query: 120 SKLLKA----GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
S+L KA A+DE HC S+WGHDFR +YK L L+ + LTATAT V
Sbjct: 202 SRLEKAYEARRFTRIAIDEVHCCSQWGHDFRPDYKALGILKRQFPNTSLIGLTATATSHV 261
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVI-NRGQSFVDELVQEILKSVAGAGSIIVY 234
D L ++ + ASF+R NL+Y V+ + + F++++V+ I G II Y
Sbjct: 262 LKDAQKILCVEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGII-Y 320
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C + KD E+++ +L++LG+ AG YH M + + HR + +EI+V+VAT+AFGMGIDK
Sbjct: 321 CFSQKDSEQVTVSLQKLGIHAGAYHANMEPEDKTTVHRRWSANEIQVVVATVAFGMGIDK 380
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT 354
PDVR VIH+ K++E+YYQESGR GRD + C LYY F GD + S +
Sbjct: 381 PDVRFVIHHSMSKSMENYYQESGRAGRDDTKADCILYYG---F--GDIFRISSMVVMENV 435
Query: 355 AIMESLLAAQRYCL-LTTCRR 374
+ L YC ++ CRR
Sbjct: 436 G-QQKLYEMVSYCQNISKCRR 455
>WB|WBGene00001865 [details] [associations]
symbol:him-6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0051307 "meiotic chromosome separation" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IGI] [GO:0007059
"chromosome segregation" evidence=IGI] [GO:0007126 "meiosis"
evidence=IGI] [GO:0007067 "mitosis" evidence=IGI] [GO:0007131
"reciprocal meiotic recombination" evidence=IMP] [GO:0000077 "DNA
damage checkpoint" evidence=IMP] [GO:0010165 "response to X-ray"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0019899 "enzyme binding" evidence=IPI]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0005634 GO:GO:0008340 GO:GO:0000077 GO:GO:0043066
GO:GO:0007067 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010165 GO:GO:0051276
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0007131 EMBL:AY095296 EMBL:Z83123 PIR:T24415
RefSeq:NP_502390.2 UniGene:Cel.5990 ProteinModelPortal:O18017
SMR:O18017 IntAct:O18017 MINT:MINT-227232 STRING:O18017
PaxDb:O18017 EnsemblMetazoa:T04A11.6 GeneID:178201
KEGG:cel:CELE_T04A11.6 UCSC:T04A11.6.1 CTD:178201 WormBase:T04A11.6
eggNOG:COG0514 GeneTree:ENSGT00550000074520 HOGENOM:HOG000022124
InParanoid:O18017 KO:K10901 OMA:PEDANDS NextBio:900142
GO:GO:0051307 Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
Uniprot:O18017
Length = 988
Score = 651 (234.2 bits), Expect = 2.4e-63, P = 2.4e-63
Identities = 155/387 (40%), Positives = 221/387 (57%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ TLK FG++ FR QK I + D V+M TG+GKSLCYQLP ++ +VVS
Sbjct: 235 LYDTLKSKFGFNQFRHRQKQCILSTLMGHDTFVLMPTGAGKSLCYQLPAVILPGVTVVVS 294
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTK--AETGY----FQLLFMTPEKACII 114
PL SL++DQ M +K+ GI E L +A + Q K AE G +LL++TPEK
Sbjct: 295 PLRSLIEDQKMKMKELGIGCEAL-TADLGAPAQEKIYAELGSGNPSIKLLYVTPEKISAS 353
Query: 115 PI--SFWSKLLKAGVCL-FAVDEAHCISEWGHDFRLEYKQLDKLRTFLLG--VPFVALTA 169
S + L + G+ F +DEAHC+S+WGHDFR +Y +L LR VP +ALTA
Sbjct: 354 GRLNSVFFDLHRRGLLARFVIDEAHCVSQWGHDFRPDYTKLSSLREKYANPPVPIIALTA 413
Query: 170 TATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAG 229
TAT K+ D + LK++N + I+SF R NL Y + + +S ++ V E +K +
Sbjct: 414 TATPKIVTDARDHLKMQNSKLFISSFVRDNLKYDL-IPKAARSLIN--VVEKMKQLYPGK 470
Query: 230 SIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFG 289
S IVYC++ K+ E + L + G+ A YH + R R +I ++ V+ AT+AFG
Sbjct: 471 SGIVYCLSRKECETVQMMLTKAGLSAEVYHAGLNDNLRVSVQRSWIANKFDVICATIAFG 530
Query: 290 MGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQT 349
MGIDKPDVR VIHY PK++E YYQE+GR GRDG+ S C + Y+ + + E T
Sbjct: 531 MGIDKPDVRFVIHYSLPKSIEGYYQETGRAGRDGMPSYCLMLYSYHDSIRLRRMIEEGNT 590
Query: 350 ENQ-RTAIMESLLAAQRYCL-LTTCRR 374
R+ + ++L YC ++ CRR
Sbjct: 591 TTGVRSMHLNNVLQVVAYCENVSVCRR 617
>TAIR|locus:2197394 [details] [associations]
symbol:RECQ4A species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA;IMP] [GO:0006310 "DNA
recombination" evidence=IEA;IMP] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=IEA] [GO:0070417 "cellular
response to cold" evidence=IEP] [GO:0071215 "cellular response to
abscisic acid stimulus" evidence=IEP] [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IGI;RCA;IMP] [GO:0006974
"response to DNA damage stimulus" evidence=IGI;IMP] [GO:0043138
"3'-5' DNA helicase activity" evidence=IMP;IDA] [GO:0051276
"chromosome organization" evidence=IMP] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
Prosite:PS00018 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0009506 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0000724 EMBL:U95973 GO:GO:0071215 GO:GO:0070417 GO:GO:0051276
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0043138 HSSP:P15043 EMBL:AJ404473
EMBL:AY120761 EMBL:BT010133 IPI:IPI00538289 PIR:B86243
RefSeq:NP_172562.2 UniGene:At.10177 ProteinModelPortal:Q8L840
SMR:Q8L840 STRING:Q8L840 PaxDb:Q8L840 PRIDE:Q8L840
EnsemblPlants:AT1G10930.1 GeneID:837636 KEGG:ath:AT1G10930
TAIR:At1g10930 HOGENOM:HOG000148634 InParanoid:Q8L840 OMA:QLPALIC
PhylomeDB:Q8L840 ProtClustDB:PLN03137 Genevestigator:Q8L840
Uniprot:Q8L840
Length = 1188
Score = 648 (233.2 bits), Expect = 1.5e-62, P = 1.5e-62
Identities = 144/344 (41%), Positives = 205/344 (59%)
Query: 6 KKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISL 65
KK FG FRP Q+++I + D V+M TG GKSL YQLP L+ G LV+SPL+SL
Sbjct: 446 KKVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICGGITLVISPLVSL 505
Query: 66 MQDQVMSLKQRGINAEFLGSAQTDSSVQTK------AETGYFQLLFMTPEKACIIP--IS 117
+QDQ+M+L Q I A L SA + + Q K +E ++LL++TPEK +
Sbjct: 506 IQDQIMNLLQANIPAASL-SAGMEWAEQLKIFQELNSEHSKYKLLYVTPEKVAKSDSLLR 564
Query: 118 FWSKLLKAGVCL-FAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
L G+ F +DEAHC+S+WGHDFR +Y+ L L+ +P +ALTATAT V+
Sbjct: 565 HLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTATATASVK 624
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGV-KVINRGQSFVDELVQEILKSVAGAGSIIVYC 235
D++ +L L N V SF+R NL+Y V + +D+ ++E G I+YC
Sbjct: 625 EDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIKENHFDECG----IIYC 680
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
++ D E++S+ L++ G KA YHG M + R + +DEI ++ AT+AFGMGI+KP
Sbjct: 681 LSRMDCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGMGINKP 740
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAK 339
DVR VIH+ PK++E Y+QE GR GRDG S C LYY ++ +
Sbjct: 741 DVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIR 784
>UNIPROTKB|F1PNP1 [details] [associations]
symbol:RECQL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 KO:K10899 OMA:ESSQTCH CTD:5965 EMBL:AAEX03015200
RefSeq:XP_543768.1 Ensembl:ENSCAFT00000019449 GeneID:486641
KEGG:cfa:486641 Uniprot:F1PNP1
Length = 646
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 153/383 (39%), Positives = 220/383 (57%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ F FR Q + I + +D +VM TG GKSLCYQLP L + LV+ PLIS
Sbjct: 83 LQNIFKLQRFRLLQLETINVTMSGKDVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLIS 142
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQ-TKAE----TGYFQLLFMTPEKACIIPISFW 119
LM+DQ+M LKQ GI+A L ++ + V+ AE +L+++TPEK + F
Sbjct: 143 LMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMINKNSKLKLIYVTPEKIAKSKM-FM 201
Query: 120 SKLLKA----GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
S+L KA AVDE HC S WGHDFR +YK L L+ + LTATAT V
Sbjct: 202 SRLEKAYEARRFTRIAVDEVHCCSHWGHDFRPDYKALGILKRQFPNTALMGLTATATSHV 261
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGA--G-SII 232
D L + + ASF+R NL+Y ++ + S ++++++I+K + G G S I
Sbjct: 262 LKDAQKILCVGKCFTFTASFNRPNLYYEIR---QKPSNTEDVIEDIVKLINGRYKGQSGI 318
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
+YC + KD E+++ +L++LG++AG YH M + + HR + +EI+V+VAT+AFGMGI
Sbjct: 319 IYCFSQKDSEQVTVSLQKLGIQAGAYHANMEPEDKTRVHRRWSANEIQVVVATVAFGMGI 378
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ 352
DKPDVR +IH+ K++E+YYQESGR GRD + + C LYY F GD + S +
Sbjct: 379 DKPDVRFIIHHSMSKSIENYYQESGRAGRDDMKADCILYYG---F--GDIFRISSMVVME 433
Query: 353 RTAIMESLLAAQRYCL-LTTCRR 374
+ L YC ++ CRR
Sbjct: 434 NVG-QQKLYEMVSYCQNISKCRR 455
>CGD|CAL0004296 [details] [associations]
symbol:SGS1 species:5476 "Candida albicans" [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0001302
"replicative cell aging" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0031422 "RecQ helicase-Topo III complex"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0044182
"filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0031860 "telomeric 3' overhang formation"
evidence=IEA] [GO:0000706 "meiotic DNA double-strand break
processing" evidence=IEA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0031292 "gene conversion at
mating-type locus, DNA double-strand break processing"
evidence=IEA] [GO:0000722 "telomere maintenance via recombination"
evidence=IEA] [GO:0010947 "negative regulation of meiotic joint
molecule formation" evidence=IEA] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IEA] [GO:0045132
"meiotic chromosome segregation" evidence=IEA] [GO:0030447
"filamentous growth" evidence=IMP] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
CGD:CAL0004296 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0003676
GO:GO:0006974 GO:GO:0005622 GO:GO:0006310 EMBL:AACQ01000059
EMBL:AACQ01000058 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0044182 RefSeq:XP_717059.1
RefSeq:XP_717138.1 ProteinModelPortal:Q5A5R4 STRING:Q5A5R4
GeneID:3641258 GeneID:3641294 KEGG:cal:CaO19.12795
KEGG:cal:CaO19.5335 Uniprot:Q5A5R4
Length = 1189
Score = 644 (231.8 bits), Expect = 4.0e-62, P = 4.0e-62
Identities = 157/389 (40%), Positives = 219/389 (56%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV----TGKTALV 58
S L F FR Q + + + +D V+M TG GKSLCYQLP LV T T +V
Sbjct: 455 SILNNVFKLKSFRANQLEAVSATLSNKDVFVLMPTGGGKSLCYQLPALVKSGATKGTTVV 514
Query: 59 VSPLISLMQDQVMSLKQRGINAEFLGS-AQTDSSVQT--KAETGYFQLLFMTPEKA--CI 113
+SPLISLMQDQV L + I A S D + T G+ +++++PE+A
Sbjct: 515 ISPLISLMQDQVQHLLAKNIKAGMFSSKGGNDDNKHTIHLFREGFLDIVYLSPERANKSN 574
Query: 114 IPISFWSKLLKAG-VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATAT 172
+ +KL + +DEAHC+S WGHDFR +Y+ L + VP +ALTATA
Sbjct: 575 AMQTIMTKLYNNNQLARVVIDEAHCLSSWGHDFRPDYQGLGFFKDKFPKVPIMALTATAN 634
Query: 173 EKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSII 232
EKV++DI+++LK+K+P + SF+R NLFY +K+ + + + E+ IL +G II
Sbjct: 635 EKVQMDILHNLKMKDPVLLKQSFNRTNLFYEIKL--KKSNCLLEIKDYILSRFSGKSGII 692
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
YC + + E S L + G+K YH M + R + + ++I+V+ AT+AFGMGI
Sbjct: 693 -YCHSKQSCEHTSMKLNEYGLKTSFYHAGMSADKRFNIQKRWQENKIQVICATIAFGMGI 751
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYY----ARS--NFAKGDFYCGE 346
DKPDVR VIH P+TLE YYQE+GR GRDG S C +YY ARS N + D E
Sbjct: 752 DKPDVRFVIHLYLPRTLEGYYQETGRAGRDGNFSECVMYYCYKDARSLQNLIQRD----E 807
Query: 347 SQTENQRTAIMESLLAAQRYCLLTT-CRR 374
+E+ R + + L +YC TT CRR
Sbjct: 808 ELSESGRESHLAKLRQVIQYCENTTDCRR 836
>UNIPROTKB|Q5A5R4 [details] [associations]
symbol:SGS1 "Putative uncharacterized protein SGS1"
species:237561 "Candida albicans SC5314" [GO:0001302 "replicative
cell aging" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0044182 "filamentous growth of a population of
unicellular organisms" evidence=IMP] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00490 SMART:SM00956
CGD:CAL0004296 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0001302 GO:GO:0003676
GO:GO:0006974 GO:GO:0005622 GO:GO:0006310 EMBL:AACQ01000059
EMBL:AACQ01000058 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0044182 RefSeq:XP_717059.1
RefSeq:XP_717138.1 ProteinModelPortal:Q5A5R4 STRING:Q5A5R4
GeneID:3641258 GeneID:3641294 KEGG:cal:CaO19.12795
KEGG:cal:CaO19.5335 Uniprot:Q5A5R4
Length = 1189
Score = 644 (231.8 bits), Expect = 4.0e-62, P = 4.0e-62
Identities = 157/389 (40%), Positives = 219/389 (56%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV----TGKTALV 58
S L F FR Q + + + +D V+M TG GKSLCYQLP LV T T +V
Sbjct: 455 SILNNVFKLKSFRANQLEAVSATLSNKDVFVLMPTGGGKSLCYQLPALVKSGATKGTTVV 514
Query: 59 VSPLISLMQDQVMSLKQRGINAEFLGS-AQTDSSVQT--KAETGYFQLLFMTPEKA--CI 113
+SPLISLMQDQV L + I A S D + T G+ +++++PE+A
Sbjct: 515 ISPLISLMQDQVQHLLAKNIKAGMFSSKGGNDDNKHTIHLFREGFLDIVYLSPERANKSN 574
Query: 114 IPISFWSKLLKAG-VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATAT 172
+ +KL + +DEAHC+S WGHDFR +Y+ L + VP +ALTATA
Sbjct: 575 AMQTIMTKLYNNNQLARVVIDEAHCLSSWGHDFRPDYQGLGFFKDKFPKVPIMALTATAN 634
Query: 173 EKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSII 232
EKV++DI+++LK+K+P + SF+R NLFY +K+ + + + E+ IL +G II
Sbjct: 635 EKVQMDILHNLKMKDPVLLKQSFNRTNLFYEIKL--KKSNCLLEIKDYILSRFSGKSGII 692
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
YC + + E S L + G+K YH M + R + + ++I+V+ AT+AFGMGI
Sbjct: 693 -YCHSKQSCEHTSMKLNEYGLKTSFYHAGMSADKRFNIQKRWQENKIQVICATIAFGMGI 751
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYY----ARS--NFAKGDFYCGE 346
DKPDVR VIH P+TLE YYQE+GR GRDG S C +YY ARS N + D E
Sbjct: 752 DKPDVRFVIHLYLPRTLEGYYQETGRAGRDGNFSECVMYYCYKDARSLQNLIQRD----E 807
Query: 347 SQTENQRTAIMESLLAAQRYCLLTT-CRR 374
+E+ R + + L +YC TT CRR
Sbjct: 808 ELSESGRESHLAKLRQVIQYCENTTDCRR 836
>ZFIN|ZDB-GENE-070702-5 [details] [associations]
symbol:blm "Bloom syndrome" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0045950 "negative
regulation of mitotic recombination" evidence=IMP] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012532
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
ZFIN:ZDB-GENE-070702-5 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0045950 EMBL:CABZ01019975
EMBL:CABZ01036951 EMBL:CABZ01036952 EMBL:CABZ01036953
EMBL:CABZ01036954 EMBL:CABZ01036955 EMBL:CABZ01036956
EMBL:CABZ01036957 EMBL:CABZ01036958 EMBL:CABZ01036959
EMBL:CABZ01036960 EMBL:CABZ01036961 EMBL:CABZ01036962
EMBL:CABZ01036963 EMBL:CABZ01036964 EMBL:CABZ01039756 EMBL:CR450750
IPI:IPI00934934 Ensembl:ENSDART00000110746 Uniprot:E7EZY7
Length = 1420
Score = 645 (232.1 bits), Expect = 5.4e-62, P = 5.4e-62
Identities = 154/386 (39%), Positives = 214/386 (55%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ K FG FR Q + I + D V+M TG GKSLCYQLP V+ +V+S
Sbjct: 647 MMKIFHKKFGLHQFRFNQLEAINASLLGEDTFVLMPTGGGKSLCYQLPACVSAGVTVVIS 706
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSS-----VQTKAETGYFQLLFMTPEKACIIP 115
PL SL+ DQV L I A L + DS +Q + +LL+ TPEK C
Sbjct: 707 PLRSLIVDQVQKLTTLDICATSLSGDKKDSEAARIYMQLSRKDPAIKLLYATPEKVCASG 766
Query: 116 --ISFWSKLLKAGVCL-FAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATAT 172
IS L + G+ +DEAHC+S+WGHDFR +YK+L +LR VP +ALTATAT
Sbjct: 767 RMISALQNLYERGLLARLVIDEAHCVSQWGHDFRPDYKRLHELRRMFPNVPIMALTATAT 826
Query: 173 EKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSII 232
+V+ DI+N L + P V SF+R NL Y V + + VDE + +K S I
Sbjct: 827 PRVQKDILNQLAMTRPQVFTMSFNRNNLKYSV--LPKKPKKVDEECIQWIKKYYPRDSGI 884
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFI-RDEIRVMVATMAFGMG 291
VYC++ D + ++ +L++ G+ A YH + RE +I +D +VM AT+AFGMG
Sbjct: 885 VYCLSRNDCDTLADSLQRAGIAALAYHAGLSDSDREYVQNKWINQDGCQVMCATIAFGMG 944
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTEN 351
IDKPDVR+VIH PK++E YYQESGR GRDG S C L+Y+ S+ + + N
Sbjct: 945 IDKPDVRYVIHASLPKSVEGYYQESGRAGRDGEISHCVLFYSYSDVIRIKRLIAMDKDGN 1004
Query: 352 QRTAI--MESLLAAQRYCL-LTTCRR 374
Q++ + +L + +C + CRR
Sbjct: 1005 QQSKATHINNLHSMVHFCENVAECRR 1030
>ASPGD|ASPL0000045206 [details] [associations]
symbol:musN species:162425 "Emericella nidulans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0006260
EMBL:BN001307 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0005622 GO:GO:0006310 EMBL:AACD01000032
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
KO:K10901 Gene3D:1.10.150.80 TIGRFAMs:TIGR00614 RefSeq:XP_659691.1
ProteinModelPortal:G5EB35 EnsemblFungi:CADANIAT00008758
GeneID:2875310 KEGG:ani:AN2087.2 HOGENOM:HOG000182791 OMA:EERQWIM
Uniprot:G5EB35
Length = 1534
Score = 640 (230.4 bits), Expect = 2.2e-61, P = 2.2e-61
Identities = 150/389 (38%), Positives = 223/389 (57%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT-GKT---ALVVS 60
LK+ F FRP Q + I + +D V+M TG GKSLCYQLP +++ G T LV+S
Sbjct: 692 LKERFHLRGFRPNQLEAIDSTLSGKDTFVLMPTGGGKSLCYQLPSVISSGSTRGVTLVIS 751
Query: 61 PLISLMQDQVMSLKQRGINAEFL-GSAQTD------SSVQTKAETGYFQLLFMTPE---K 110
PL+SLMQDQV L+Q I A + G ++ S++ + + +LL++TPE K
Sbjct: 752 PLLSLMQDQVSHLRQNKIKAYLINGDTPSEERQWIMSTLSSHNPETHIELLYITPEMISK 811
Query: 111 ACIIPISFWSKLLKAG-VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTA 169
+ + KL + +DEAHC+S+WGHDFR +YKQ+ R + GVP +ALTA
Sbjct: 812 SHALTDRI-EKLCSIQKLARVVIDEAHCVSQWGHDFRPDYKQIGAFRARIPGVPLMALTA 870
Query: 170 TATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAG 229
TATE V++D+I++L+++ V SF+R NL Y V+ + +D + I KS
Sbjct: 871 TATENVKVDVIHNLRMQGCEVFTQSFNRPNLTYEVRRKGKHAELLDSIADTI-KSTYRNK 929
Query: 230 SIIVYCMTIKDVEEISKALK-QLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAF 288
IVYC++ E++++AL+ +KA YH + ++ R + + ++ V+VAT+AF
Sbjct: 930 CGIVYCLSRNTCEKVAEALRTNYSIKAEHYHAGLDAETRARTQQRWQAGDVHVIVATIAF 989
Query: 289 GMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA--KGDFYCGE 346
GMGIDKPDVR VIH+ PK+LE YYQE+GR GRDG S C+LY++ + + + E
Sbjct: 990 GMGIDKPDVRFVIHHSIPKSLEGYYQETGRAGRDGRRSGCYLYFSHRDVSTMQSMIEKNE 1049
Query: 347 SQTENQRTAIMESLLAAQRYCL-LTTCRR 374
+ Q+ L +YC CRR
Sbjct: 1050 DSDDVQKGRQTRMLNDVVKYCENANDCRR 1078
>RGD|1308810 [details] [associations]
symbol:Blm "Bloom syndrome, RecQ helicase-like" species:10116
"Rattus norvegicus" [GO:0000079 "regulation of cyclin-dependent
protein serine/threonine kinase activity" evidence=ISO] [GO:0000405
"bubble DNA binding" evidence=ISO] [GO:0000723 "telomere
maintenance" evidence=ISO] [GO:0000729 "DNA double-strand break
processing" evidence=ISO] [GO:0000733 "DNA strand renaturation"
evidence=ISO] [GO:0000800 "lateral element" evidence=ISO]
[GO:0001673 "male germ cell nucleus" evidence=ISO] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISO] [GO:0004386
"helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA;ISO] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005657 "replication
fork" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006200 "ATP catabolic
process" evidence=ISO] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0006310 "DNA
recombination" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0009378 "four-way junction helicase activity"
evidence=ISO] [GO:0010165 "response to X-ray" evidence=ISO]
[GO:0016363 "nuclear matrix" evidence=ISO] [GO:0016605 "PML body"
evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031297 "replication fork processing" evidence=ISO] [GO:0036310
"annealing helicase activity" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
[GO:0045120 "pronucleus" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0045950 "negative regulation of mitotic
recombination" evidence=ISO] [GO:0046632 "alpha-beta T cell
differentiation" evidence=ISO] [GO:0046641 "positive regulation of
alpha-beta T cell proliferation" evidence=ISO] [GO:0051098
"regulation of binding" evidence=ISO] [GO:0051259 "protein
oligomerization" evidence=ISO] [GO:0051276 "chromosome
organization" evidence=ISO] [GO:0051782 "negative regulation of
cell division" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
evidence=ISO] [GO:0000781 "chromosome, telomeric region"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR012532
Pfam:PF00270 Pfam:PF00271 Pfam:PF08072 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 RGD:1308810 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 IPI:IPI00561580 Ensembl:ENSRNOT00000030936
UCSC:RGD:1308810 ArrayExpress:D3ZSJ5 Uniprot:D3ZSJ5
Length = 999
Score = 630 (226.8 bits), Expect = 5.6e-61, P = 5.6e-61
Identities = 142/341 (41%), Positives = 199/341 (58%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ +K FG FR Q + I + DC ++M TG GKSLCYQLP V+ +V+S
Sbjct: 646 MMKIFRKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVIS 705
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSS-----VQTKAETGYFQLLFMTPEKACIIP 115
PL SL+ DQV L I A +L +TDS +Q + +LL++TPEK C
Sbjct: 706 PLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEKVCASN 765
Query: 116 --ISFWSKLLKAGVCL-FAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATAT 172
IS L + + F +DEAHC+S+WGHDFR +YK+++ LR VP +ALTATA
Sbjct: 766 RLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQRFPSVPVMALTATAN 825
Query: 173 EKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSII 232
+V+ DI+ LK+ P V SF+R NL Y V + +D L E ++ S I
Sbjct: 826 PRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVALDCL--EWIRKHHPYDSGI 883
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEA-HRLFIRDEIRVMVATMAFGMG 291
+YC++ K+ + ++ L++ G+ A YH + AR+E H+ +D +V+ AT+AFGMG
Sbjct: 884 IYCLSRKECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAFGMG 943
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYY 332
IDKPDVR V+H PK++E YYQESGR GRDG S C L+Y
Sbjct: 944 IDKPDVRFVVHASLPKSVEGYYQESGRAGRDGEISHCVLFY 984
>MGI|MGI:1328362 [details] [associations]
symbol:Blm "Bloom syndrome, RecQ helicase-like"
species:10090 "Mus musculus" [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000723
"telomere maintenance" evidence=IGI] [GO:0000729 "DNA double-strand
break processing" evidence=ISO] [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000800 "lateral element"
evidence=ISO] [GO:0001673 "male germ cell nucleus" evidence=IDA]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0003824
"catalytic activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005657
"replication fork" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO;IDA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IDA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISO] [GO:0009378 "four-way junction
helicase activity" evidence=ISO] [GO:0010165 "response to X-ray"
evidence=ISO] [GO:0016363 "nuclear matrix" evidence=ISO]
[GO:0016605 "PML body" evidence=ISO] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031297
"replication fork processing" evidence=ISO] [GO:0036310 "annealing
helicase activity" evidence=ISO] [GO:0043140 "ATP-dependent 3'-5'
DNA helicase activity" evidence=IDA] [GO:0044237 "cellular
metabolic process" evidence=IEA] [GO:0045120 "pronucleus"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045910 "negative regulation of
DNA recombination" evidence=ISO] [GO:0045950 "negative regulation
of mitotic recombination" evidence=IMP] [GO:0046632 "alpha-beta T
cell differentiation" evidence=IMP] [GO:0046641 "positive
regulation of alpha-beta T cell proliferation" evidence=IMP]
[GO:0051098 "regulation of binding" evidence=IDA] [GO:0051259
"protein oligomerization" evidence=ISO] [GO:0051276 "chromosome
organization" evidence=IMP] [GO:0051782 "negative regulation of
cell division" evidence=ISO] [GO:0051880 "G-quadruplex DNA binding"
evidence=ISO] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 MGI:MGI:1328362 GO:GO:0005524
GO:GO:0005737 GO:GO:0005654 GO:GO:0003677 GO:GO:0006260
Gene3D:1.10.10.10 InterPro:IPR011991 Reactome:REACT_120463
GO:GO:0006310 GO:GO:0001673 GO:GO:0046632 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
Reactome:REACT_27235 GO:GO:0005657 eggNOG:COG0514
GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 HOGENOM:HOG000095239
HOVERGEN:HBG004850 OrthoDB:EOG4640B3 GO:GO:0000729 ChiTaRS:BLM
CTD:641 GO:GO:0045120 GO:GO:0045950 GO:GO:0046641 GO:GO:0051098
EMBL:Z98263 EMBL:AB008674 IPI:IPI00329943 RefSeq:NP_001035992.1
RefSeq:NP_031576.4 UniGene:Mm.12932 ProteinModelPortal:O88700
SMR:O88700 DIP:DIP-27643N STRING:O88700 PhosphoSite:O88700
PRIDE:O88700 DNASU:12144 Ensembl:ENSMUST00000081314 GeneID:12144
KEGG:mmu:12144 UCSC:uc009iaw.2 InParanoid:O88700 NextBio:280473
Bgee:O88700 CleanEx:MM_BLM Genevestigator:O88700
GermOnline:ENSMUSG00000030528 Uniprot:O88700
Length = 1416
Score = 635 (228.6 bits), Expect = 6.3e-61, P = 6.3e-61
Identities = 150/386 (38%), Positives = 215/386 (55%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ K FG FR Q + I + DC ++M TG GKSLCYQLP V+ +V+S
Sbjct: 663 MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVIS 722
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSS-----VQTKAETGYFQLLFMTPEKACIIP 115
PL SL+ DQV L I A +L +TDS +Q + +LL++TPEK C
Sbjct: 723 PLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEKVCASN 782
Query: 116 --ISFWSKLLKAGVCL-FAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATAT 172
IS L + + F +DEAHC+S+WGHDFR +YK+++ LR VP +ALTATA
Sbjct: 783 RLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATAN 842
Query: 173 EKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSII 232
+V+ DI+ LK+ P V SF+R NL Y V + + + + ++ I K S I
Sbjct: 843 PRVQKDILTQLKILRPQVFSMSFNRHNLKYYV-LPKKPKKVAFDCLEWIRKHHP-YDSGI 900
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEA-HRLFIRDEIRVMVATMAFGMG 291
+YC++ ++ + ++ L++ G+ A YH + AR+E H+ +D +V+ AT+AFGMG
Sbjct: 901 IYCLSRRECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAFGMG 960
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTEN 351
IDKPDVR VIH PK++E YYQESGR GRDG S C L+Y + + + N
Sbjct: 961 IDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLIMMEKDGN 1020
Query: 352 QRT--AIMESLLAAQRYCL-LTTCRR 374
T + +L + YC +T CRR
Sbjct: 1021 YHTKETHVNNLYSMVHYCENITECRR 1046
>UNIPROTKB|E2RS76 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051880 "G-quadruplex DNA binding"
evidence=IEA] [GO:0051782 "negative regulation of cell division"
evidence=IEA] [GO:0051259 "protein oligomerization" evidence=IEA]
[GO:0051098 "regulation of binding" evidence=IEA] [GO:0046641
"positive regulation of alpha-beta T cell proliferation"
evidence=IEA] [GO:0046632 "alpha-beta T cell differentiation"
evidence=IEA] [GO:0045950 "negative regulation of mitotic
recombination" evidence=IEA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045120
"pronucleus" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0016605 "PML body" evidence=IEA]
[GO:0016363 "nuclear matrix" evidence=IEA] [GO:0010165 "response to
X-ray" evidence=IEA] [GO:0009378 "four-way junction helicase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005657 "replication
fork" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0002039
"p53 binding" evidence=IEA] [GO:0001673 "male germ cell nucleus"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0000781 "chromosome, telomeric region" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0000405
"bubble DNA binding" evidence=IEA] [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0046632
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
EMBL:AAEX03002333 Ensembl:ENSCAFT00000019677 Uniprot:E2RS76
Length = 1407
Score = 634 (228.2 bits), Expect = 7.9e-61, P = 7.9e-61
Identities = 150/386 (38%), Positives = 212/386 (54%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ K FG FR Q + I + DC ++M TG GKSLCYQLP V+ +V+S
Sbjct: 644 MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVIS 703
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSS-----VQTKAETGYFQLLFMTPEKACIIP 115
PL SL+ DQV L I A +L +TDS +Q + +LL++TPEK C
Sbjct: 704 PLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEKVCASN 763
Query: 116 --ISFWSKLLKAGVCL-FAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATAT 172
+S L + + F +DEAHC+S+WGHDFR +YK+++ LR VP +ALTATA
Sbjct: 764 RLLSTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATAN 823
Query: 173 EKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSII 232
+V+ DI+ LK+ P V SF+R NL Y V + D L E ++ S I
Sbjct: 824 PRVQKDILTQLKILQPQVFSMSFNRHNLKYYVLPKKPKKVAFDCL--EWIRKYHPHDSGI 881
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEA-HRLFIRDEIRVMVATMAFGMG 291
+YC++ ++ + ++ L++ G+ A YH + AR+E H+ +D +V+ AT+AFGMG
Sbjct: 882 IYCLSRRECDTMADTLQKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGMG 941
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA--KGDFYCGESQT 349
IDKPDVR VIH PK++E YYQESGR GRDG S C L+Y + K +
Sbjct: 942 IDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLILMEKDGN 1001
Query: 350 ENQRTAIMESLLAAQRYCL-LTTCRR 374
+ R +L + YC +T CRR
Sbjct: 1002 RHTRETHFNNLYSMVHYCENITECRR 1027
>UNIPROTKB|J9PB86 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR012532
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF00570
Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967
PROSITE:PS51194 SMART:SM00341 SMART:SM00490 SMART:SM00956
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 CTD:641 OMA:NANDQAI
EMBL:AAEX03002333 RefSeq:XP_003434427.1 Ensembl:ENSCAFT00000042800
GeneID:100685609 KEGG:cfa:100685609 Uniprot:J9PB86
Length = 1420
Score = 634 (228.2 bits), Expect = 8.1e-61, P = 8.1e-61
Identities = 150/386 (38%), Positives = 212/386 (54%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ K FG FR Q + I + DC ++M TG GKSLCYQLP V+ +V+S
Sbjct: 657 MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVIS 716
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSS-----VQTKAETGYFQLLFMTPEKACIIP 115
PL SL+ DQV L I A +L +TDS +Q + +LL++TPEK C
Sbjct: 717 PLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEKVCASN 776
Query: 116 --ISFWSKLLKAGVCL-FAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATAT 172
+S L + + F +DEAHC+S+WGHDFR +YK+++ LR VP +ALTATA
Sbjct: 777 RLLSTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATAN 836
Query: 173 EKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSII 232
+V+ DI+ LK+ P V SF+R NL Y V + D L E ++ S I
Sbjct: 837 PRVQKDILTQLKILQPQVFSMSFNRHNLKYYVLPKKPKKVAFDCL--EWIRKYHPHDSGI 894
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEA-HRLFIRDEIRVMVATMAFGMG 291
+YC++ ++ + ++ L++ G+ A YH + AR+E H+ +D +V+ AT+AFGMG
Sbjct: 895 IYCLSRRECDTMADTLQKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGMG 954
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA--KGDFYCGESQT 349
IDKPDVR VIH PK++E YYQESGR GRDG S C L+Y + K +
Sbjct: 955 IDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLILMEKDGN 1014
Query: 350 ENQRTAIMESLLAAQRYCL-LTTCRR 374
+ R +L + YC +T CRR
Sbjct: 1015 RHTRETHFNNLYSMVHYCENITECRR 1040
>UNIPROTKB|H0YNU5 [details] [associations]
symbol:BLM "Bloom syndrome protein" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
TIGRFAMs:TIGR00614 HGNC:HGNC:1058 EMBL:AC021422 EMBL:AC124248
ProteinModelPortal:H0YNU5 SMR:H0YNU5 Ensembl:ENST00000560509
Bgee:H0YNU5 Uniprot:H0YNU5
Length = 1286
Score = 632 (227.5 bits), Expect = 1.0e-60, P = 1.0e-60
Identities = 150/386 (38%), Positives = 215/386 (55%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ K FG FR Q + I + DC ++M TG GKSLCYQLP V+ +V+S
Sbjct: 655 MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVIS 714
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSS-----VQTKAETGYFQLLFMTPEKACIIP 115
PL SL+ DQV L I A +L +TDS +Q + +LL++TPEK C
Sbjct: 715 PLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASN 774
Query: 116 --ISFWSKLLKAGVCL-FAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATAT 172
IS L + + F +DEAHC+S+WGHDFR +YK+++ LR VP +ALTATA
Sbjct: 775 RLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATAN 834
Query: 173 EKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSII 232
+V+ DI+ LK+ P V SF+R NL Y V + + + + ++ I K S I
Sbjct: 835 PRVQKDILTQLKILRPQVFSMSFNRHNLKYYV-LPKKPKKVAFDCLEWIRKHHP-YDSGI 892
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFI-RDEIRVMVATMAFGMG 291
+YC++ ++ + ++ L++ G+ A YH + AR+E + +I +D +V+ AT+AFGMG
Sbjct: 893 IYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMG 952
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA--KGDFYCGESQT 349
IDKPDVR VIH PK++E YYQESGR GRDG S C L+Y + K +
Sbjct: 953 IDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGN 1012
Query: 350 ENQRTAIMESLLAAQRYCL-LTTCRR 374
+ R +L + YC +T CRR
Sbjct: 1013 HHTRETHFNNLYSMVHYCENITECRR 1038
>UNIPROTKB|E1BQ04 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
[GO:0051782 "negative regulation of cell division" evidence=IEA]
[GO:0051259 "protein oligomerization" evidence=IEA] [GO:0051098
"regulation of binding" evidence=IEA] [GO:0046641 "positive
regulation of alpha-beta T cell proliferation" evidence=IEA]
[GO:0046632 "alpha-beta T cell differentiation" evidence=IEA]
[GO:0045950 "negative regulation of mitotic recombination"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0045120 "pronucleus" evidence=IEA]
[GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0031297 "replication fork processing"
evidence=IEA] [GO:0016605 "PML body" evidence=IEA] [GO:0016363
"nuclear matrix" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0009378 "four-way junction helicase activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005657 "replication fork"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0002039 "p53
binding" evidence=IEA] [GO:0001673 "male germ cell nucleus"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0000781 "chromosome, telomeric region" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000723 "telomere maintenance" evidence=IEA] [GO:0000405
"bubble DNA binding" evidence=IEA] [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0046632
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 OMA:NANDQAI GO:GO:0000800
GO:GO:0045120 GO:GO:0000405 GO:GO:0009378 GO:GO:0051880
GO:GO:0051782 GO:GO:0045950 GO:GO:0046641 GO:GO:0051098
GO:GO:0031297 EMBL:DAAA02052171 IPI:IPI01003766
Ensembl:ENSBTAT00000027057 Uniprot:E1BQ04
Length = 1417
Score = 632 (227.5 bits), Expect = 1.3e-60, P = 1.3e-60
Identities = 150/386 (38%), Positives = 213/386 (55%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ K FG FR Q + I + DC ++M TG GKSLCYQLP V+ +V+S
Sbjct: 655 MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTIVIS 714
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSS-----VQTKAETGYFQLLFMTPEKACIIP 115
PL SL+ DQV L I A +L +TDS +Q + +LL++TPEK C
Sbjct: 715 PLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEKVCASN 774
Query: 116 --ISFWSKLLKAGVCL-FAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATAT 172
IS L + + F +DEAHC+S+WGHDFR +YK+++ LR VP +ALTATA
Sbjct: 775 RLISTLENLYERKLLARFVIDEAHCVSQWGHDFRPDYKRMNILRQKFPSVPVMALTATAN 834
Query: 173 EKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSII 232
+V+ DI+ LK+ P V SF+R NL Y V + + + + ++ I K II
Sbjct: 835 PRVQKDILTQLKILRPQVFSMSFNRHNLKYYV-LPKKPKKVAFDCLEWIRKHHPHDSGII 893
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEA-HRLFIRDEIRVMVATMAFGMG 291
YC++ ++ + +++ L+ G+ A YH + AR+E H+ +D +V+ AT+AFGMG
Sbjct: 894 -YCLSRRECDTMAETLQNDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGMG 952
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA--KGDFYCGESQT 349
IDKPDVR VIH PK++E YYQESGR GRDG S C L+Y + K +
Sbjct: 953 IDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCILFYTYHDVTRLKRLILMEKDGN 1012
Query: 350 ENQRTAIMESLLAAQRYCL-LTTCRR 374
+ R +L + YC +T CRR
Sbjct: 1013 RHTRETHFNNLYSMVHYCENITECRR 1038
>UNIPROTKB|P54132 [details] [associations]
symbol:BLM "Bloom syndrome protein" species:9606 "Homo
sapiens" [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0005657
"replication fork" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5'
DNA helicase activity" evidence=IEA] [GO:0045120 "pronucleus"
evidence=IEA] [GO:0045950 "negative regulation of mitotic
recombination" evidence=IEA] [GO:0046632 "alpha-beta T cell
differentiation" evidence=IEA] [GO:0046641 "positive regulation of
alpha-beta T cell proliferation" evidence=IEA] [GO:0051098
"regulation of binding" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0031297
"replication fork processing" evidence=IDA] [GO:0000781
"chromosome, telomeric region" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0016605 "PML body" evidence=IDA]
[GO:0048478 "replication fork protection" evidence=NAS] [GO:0000800
"lateral element" evidence=IDA] [GO:0006310 "DNA recombination"
evidence=NAS] [GO:0051259 "protein oligomerization" evidence=IDA]
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IDA] [GO:0009378
"four-way junction helicase activity" evidence=IDA] [GO:0000405
"bubble DNA binding" evidence=IDA] [GO:0051880 "G-quadruplex DNA
binding" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0051782 "negative regulation of cell division"
evidence=IMP] [GO:0000085 "G2 phase of mitotic cell cycle"
evidence=NAS] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=NAS] [GO:0010165 "response to
X-ray" evidence=IDA] [GO:0016363 "nuclear matrix" evidence=IDA]
[GO:0031572 "G2 DNA damage checkpoint" evidence=NAS] [GO:0004386
"helicase activity" evidence=IDA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IMP] [GO:0006281 "DNA repair"
evidence=NAS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IMP;IDA] [GO:0036310 "annealing helicase activity"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0000079 "regulation of
cyclin-dependent protein serine/threonine kinase activity"
evidence=IMP] [GO:0000729 "DNA double-strand break processing"
evidence=IDA] [GO:0000733 "DNA strand renaturation" evidence=IDA]
[GO:0006200 "ATP catabolic process" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0051259 GO:GO:0005524
GO:GO:0005737 Pathway_Interaction_DB:telomerasepathway
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0000085 Gene3D:1.10.10.10 InterPro:IPR011991
Reactome:REACT_111183 GO:GO:0001673 GO:GO:0003697 GO:GO:0004003
GO:GO:0000724 GO:GO:0016363 GO:GO:0046632 GO:GO:0010165
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000723 GO:GO:0031572 GO:GO:0005657 eggNOG:COG0514 KO:K10901
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
HOGENOM:HOG000095239 HOVERGEN:HBG004850 OrthoDB:EOG4640B3
GO:GO:0000729 EMBL:U39817 EMBL:AY886902 EMBL:BC093622 EMBL:BC101567
EMBL:BC115030 EMBL:BC115032 IPI:IPI00004859 PIR:A57570
RefSeq:NP_000048.1 UniGene:Hs.725208 PDB:2KV2 PDB:2RRD PDBsum:2KV2
PDBsum:2RRD ProteinModelPortal:P54132 SMR:P54132 DIP:DIP-33322N
IntAct:P54132 MINT:MINT-131918 STRING:P54132 PhosphoSite:P54132
DMDM:1705486 PaxDb:P54132 PRIDE:P54132 Ensembl:ENST00000355112
GeneID:641 KEGG:hsa:641 UCSC:uc002bpr.3 CTD:641
GeneCards:GC15P091260 HGNC:HGNC:1058 HPA:HPA005689 MIM:210900
MIM:604610 neXtProt:NX_P54132 Orphanet:125 PharmGKB:PA25369
InParanoid:P54132 OMA:NANDQAI ChEMBL:CHEMBL1293237
EvolutionaryTrace:P54132 GenomeRNAi:641 NextBio:2600
PMAP-CutDB:P54132 ArrayExpress:P54132 Bgee:P54132 CleanEx:HS_BLM
Genevestigator:P54132 GermOnline:ENSG00000197299 GO:GO:0000800
GO:GO:0045120 GO:GO:0036310 GO:GO:0000405 GO:GO:0009378
GO:GO:0051880 GO:GO:0051782 GO:GO:0045910 GO:GO:0045950
GO:GO:0046641 GO:GO:0051098 GO:GO:0031297 GO:GO:0048478
Uniprot:P54132
Length = 1417
Score = 632 (227.5 bits), Expect = 1.3e-60, P = 1.3e-60
Identities = 150/386 (38%), Positives = 215/386 (55%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ K FG FR Q + I + DC ++M TG GKSLCYQLP V+ +V+S
Sbjct: 655 MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGVTVVIS 714
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSS-----VQTKAETGYFQLLFMTPEKACIIP 115
PL SL+ DQV L I A +L +TDS +Q + +LL++TPEK C
Sbjct: 715 PLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEKICASN 774
Query: 116 --ISFWSKLLKAGVCL-FAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATAT 172
IS L + + F +DEAHC+S+WGHDFR +YK+++ LR VP +ALTATA
Sbjct: 775 RLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMALTATAN 834
Query: 173 EKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSII 232
+V+ DI+ LK+ P V SF+R NL Y V + + + + ++ I K S I
Sbjct: 835 PRVQKDILTQLKILRPQVFSMSFNRHNLKYYV-LPKKPKKVAFDCLEWIRKHHP-YDSGI 892
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFI-RDEIRVMVATMAFGMG 291
+YC++ ++ + ++ L++ G+ A YH + AR+E + +I +D +V+ AT+AFGMG
Sbjct: 893 IYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAFGMG 952
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA--KGDFYCGESQT 349
IDKPDVR VIH PK++E YYQESGR GRDG S C L+Y + K +
Sbjct: 953 IDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEKDGN 1012
Query: 350 ENQRTAIMESLLAAQRYCL-LTTCRR 374
+ R +L + YC +T CRR
Sbjct: 1013 HHTRETHFNNLYSMVHYCENITECRR 1038
>UNIPROTKB|Q9DEY9 [details] [associations]
symbol:blm "Bloom syndrome protein homolog" species:8355
"Xenopus laevis" [GO:0000729 "DNA double-strand break processing"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 HOVERGEN:HBG004850 GO:GO:0000729
CTD:641 EMBL:AF307841 RefSeq:NP_001079095.1 UniGene:Xl.706
ProteinModelPortal:Q9DEY9 GeneID:373628 KEGG:xla:373628
Xenbase:XB-GENE-982565 Uniprot:Q9DEY9
Length = 1364
Score = 631 (227.2 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 147/386 (38%), Positives = 213/386 (55%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ K FG FR Q + I + DC ++M TG GKSLCYQLP ++ +V+S
Sbjct: 607 MMKIFHKKFGLHRFRTNQLEAINACLCGEDCFILMPTGGGKSLCYQLPGCISPGVTIVIS 666
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSS-----VQTKAETGYFQLLFMTPEKACIIP 115
PL SL+ DQV L I A +L +TD+ +Q + +LL++TPEK C
Sbjct: 667 PLRSLIVDQVQKLTSLDIPATYLTGDKTDAEAASIYLQLSKKDPIIKLLYVTPEKVCAST 726
Query: 116 --ISFWSKLLKAGVCL-FAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATAT 172
IS L + + F +DEAHC+S+WGHDFR +YK+L+ LR VP +ALTATA
Sbjct: 727 RLISTMENLYERQLLARFVIDEAHCVSQWGHDFRPDYKRLNVLRQKFQSVPMMALTATAN 786
Query: 173 EKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSII 232
+V+ DI+N LK+ P + SF+R NL Y V + + + + V+ I K II
Sbjct: 787 PRVKKDILNQLKMTKPQIFTMSFNRDNLKYEV-LPKKPKRVALDCVEWIKKHHPNDSGII 845
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEA-HRLFIRDEIRVMVATMAFGMG 291
YC++ + + ++ L++ G+ A YH + R+ H+ +D+ +V+ AT+AFGMG
Sbjct: 846 -YCLSRHECDTMADTLQKEGLAALAYHAGLADSNRDYVQHKWINQDDCQVICATIAFGMG 904
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTEN 351
IDKPDVR+VIH PK++E YYQESGR GRDG S C L+Y+ + + + N
Sbjct: 905 IDKPDVRYVIHASLPKSVEGYYQESGRAGRDGETSHCLLFYSYHDVTRIRRLIQMEKDGN 964
Query: 352 QRT--AIMESLLAAQRYCL-LTTCRR 374
T +L + YC + CRR
Sbjct: 965 SHTKQTHFNNLYSMVHYCENVVECRR 990
>SGD|S000004802 [details] [associations]
symbol:SGS1 "Nucleolar DNA helicase of the RecQ family"
species:4932 "Saccharomyces cerevisiae" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0000722 "telomere maintenance via
recombination" evidence=IGI;IMP] [GO:0031860 "telomeric 3' overhang
formation" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000706 "meiotic
DNA double-strand break processing" evidence=IGI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0044237 "cellular metabolic process"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA;IDA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0010520
"regulation of reciprocal meiotic recombination" evidence=IGI]
[GO:0031573 "intra-S DNA damage checkpoint" evidence=IGI;IMP]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IGI;IMP] [GO:0031292 "gene conversion at
mating-type locus, DNA double-strand break processing"
evidence=IGI] [GO:0000729 "DNA double-strand break processing"
evidence=IGI] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0031422 "RecQ helicase-Topo III complex" evidence=IDA;IPI]
[GO:0001302 "replicative cell aging" evidence=IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0010947 "negative regulation of meiotic joint
molecule formation" evidence=IGI] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IDA] [GO:0006268 "DNA unwinding involved in
replication" evidence=IDA] [GO:0051276 "chromosome organization"
evidence=IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF09382 PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 SGD:S000004802
GO:GO:0005524 GO:GO:0005730 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0001302 GO:GO:0003676 EMBL:BK006946 GO:GO:0000070
GO:GO:0004003 GO:GO:0000724 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000706
GO:GO:0000722 eggNOG:COG0514 GeneTree:ENSGT00550000074520 KO:K10901
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0031573
EMBL:Z47815 GO:GO:0031292 GO:GO:0031860 GO:GO:0006268
OrthoDB:EOG4XSPZ5 GO:GO:0031422 EMBL:U22341 EMBL:L07870 PIR:S50918
RefSeq:NP_013915.1 PDB:1D8B PDBsum:1D8B ProteinModelPortal:P35187
SMR:P35187 DIP:DIP-2911N IntAct:P35187 MINT:MINT-442647
STRING:P35187 PeptideAtlas:P35187 EnsemblFungi:YMR190C
GeneID:855228 KEGG:sce:YMR190C CYGD:YMR190c HOGENOM:HOG000141897
OMA:TIFEICD EvolutionaryTrace:P35187 NextBio:978762
Genevestigator:P35187 GermOnline:YMR190C GO:GO:0010947
InterPro:IPR022758 Pfam:PF11408 Uniprot:P35187
Length = 1447
Score = 630 (226.8 bits), Expect = 2.3e-60, P = 2.3e-60
Identities = 154/388 (39%), Positives = 216/388 (55%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV-TGKT---ALVVS 60
L + F FRP Q + + ++ +D V+M TG GKSLCYQLP +V +GKT +V+S
Sbjct: 670 LHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTIVIS 729
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQT-DSSVQT--KAETGYFQLLFMTPE-----KAC 112
PLISLMQDQV L + I A S T + QT G L++++PE + C
Sbjct: 730 PLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGLLDLVYISPEMISASEQC 789
Query: 113 IIPISFWSKLLKAG-VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATA 171
IS +L G + VDEAHC+S WGHDFR +YK+L + +P +ALTATA
Sbjct: 790 KRAIS---RLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTATA 846
Query: 172 TEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSF-VDELVQEILKSVAGAGS 230
+E+VR+DII++L+LK P SF+R NL+Y V + F + + V+ K+ G
Sbjct: 847 SEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKKTKNTIFEICDAVKSRFKNQTG--- 903
Query: 231 IIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGM 290
I+YC + K E+ S +++ G+K YH M R + + DEI+V+ AT+AFGM
Sbjct: 904 -IIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGM 962
Query: 291 GIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQT- 349
GIDKPDVR V H+ P+TLE YYQE+GR GRDG S C Y++ + + +
Sbjct: 963 GIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDIRTMQTMIQKDKNL 1022
Query: 350 --ENQRTAIMESLLAAQRYC-LLTTCRR 374
EN+ + L YC +T CRR
Sbjct: 1023 DRENKEKHL-NKLQQVMAYCDNVTDCRR 1049
>UNIPROTKB|F1ND40 [details] [associations]
symbol:BLM "Bloom syndrome protein homolog" species:9031
"Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0000079 "regulation of cyclin-dependent protein
serine/threonine kinase activity" evidence=IEA] [GO:0000405 "bubble
DNA binding" evidence=IEA] [GO:0000723 "telomere maintenance"
evidence=IEA] [GO:0000729 "DNA double-strand break processing"
evidence=IEA] [GO:0000781 "chromosome, telomeric region"
evidence=IEA] [GO:0000800 "lateral element" evidence=IEA]
[GO:0001673 "male germ cell nucleus" evidence=IEA] [GO:0002039 "p53
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005657
"replication fork" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0009378
"four-way junction helicase activity" evidence=IEA] [GO:0010165
"response to X-ray" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0016605 "PML body" evidence=IEA] [GO:0031297
"replication fork processing" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0045120 "pronucleus" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0045950 "negative regulation of mitotic recombination"
evidence=IEA] [GO:0046632 "alpha-beta T cell differentiation"
evidence=IEA] [GO:0046641 "positive regulation of alpha-beta T cell
proliferation" evidence=IEA] [GO:0051098 "regulation of binding"
evidence=IEA] [GO:0051259 "protein oligomerization" evidence=IEA]
[GO:0051782 "negative regulation of cell division" evidence=IEA]
[GO:0051880 "G-quadruplex DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0051259 GO:GO:0005524 GO:GO:0005737
GO:GO:0045893 GO:GO:0000079 GO:GO:0005730 GO:GO:0016605
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0001673 GO:GO:0003697 GO:GO:0016363 GO:GO:0010165
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
EMBL:AADN02038832 IPI:IPI00823016 Ensembl:ENSGALT00000038179
ArrayExpress:F1ND40 Uniprot:F1ND40
Length = 1142
Score = 616 (221.9 bits), Expect = 3.6e-59, P = 3.6e-59
Identities = 147/386 (38%), Positives = 211/386 (54%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ + FG FR Q + I + DC ++M TG GKSLCYQLP V+ +V+S
Sbjct: 385 MLKIFHRKFGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTVVIS 444
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSS-----VQTKAETGYFQLLFMTPEKACIIP 115
PL SL+ DQV LK I A +L TD+ +Q + +LL++TPEK C
Sbjct: 445 PLRSLIIDQVQKLKTLDIAATYLTGDITDADASKTYMQLSKKDPIIKLLYVTPEKVCASN 504
Query: 116 --ISFWSKLL-KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATAT 172
+S L + + F +DEAHC+S+WGHDFR +YK+L+ LR VP +ALTATA
Sbjct: 505 RLLSALENLYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKFHSVPMMALTATAN 564
Query: 173 EKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSII 232
+V+ DI N L++ P V SF+R NL Y V + +D L E +K S I
Sbjct: 565 PRVQKDIQNQLEMLKPQVFTMSFNRHNLKYDVLPKKPKKVAMDCL--EWIKKYHPHDSGI 622
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDE-IRVMVATMAFGMG 291
+YC++ + + + L++ G+ A YH + R+ + ++ E +V+ AT+AFGMG
Sbjct: 623 IYCLSRHECDTTAAILQKEGLAALAYHAGLTDSNRDLVQKKWVNQEGCQVICATIAFGMG 682
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD--FYCGESQT 349
IDKPDVR+VIH PK++E YYQESGR GRDG S C L+Y+ S+ + +
Sbjct: 683 IDKPDVRYVIHASLPKSIEGYYQESGRAGRDGEMSHCLLFYSYSDVTRLRRLILMEKDGN 742
Query: 350 ENQRTAIMESLLAAQRYCL-LTTCRR 374
+ R +L + YC + CRR
Sbjct: 743 SHTRQTHFNNLYSMVHYCENVVDCRR 768
>UNIPROTKB|F1P3V1 [details] [associations]
symbol:BLM "Bloom syndrome protein homolog" species:9031
"Gallus gallus" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0051880 "G-quadruplex DNA binding" evidence=IEA] [GO:0000079
"regulation of cyclin-dependent protein serine/threonine kinase
activity" evidence=IEA] [GO:0000405 "bubble DNA binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000781 "chromosome, telomeric region" evidence=IEA]
[GO:0000800 "lateral element" evidence=IEA] [GO:0001673 "male germ
cell nucleus" evidence=IEA] [GO:0002039 "p53 binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005657 "replication fork"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0009378 "four-way junction helicase
activity" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0016363 "nuclear matrix" evidence=IEA]
[GO:0016605 "PML body" evidence=IEA] [GO:0031297 "replication fork
processing" evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA
helicase activity" evidence=IEA] [GO:0045120 "pronucleus"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0045950 "negative regulation of
mitotic recombination" evidence=IEA] [GO:0046632 "alpha-beta T cell
differentiation" evidence=IEA] [GO:0046641 "positive regulation of
alpha-beta T cell proliferation" evidence=IEA] [GO:0051098
"regulation of binding" evidence=IEA] [GO:0051259 "protein
oligomerization" evidence=IEA] [GO:0051782 "negative regulation of
cell division" evidence=IEA] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR012532 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF08072 Pfam:PF09382
PROSITE:PS00690 PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341
SMART:SM00490 SMART:SM00956 GO:GO:0051259 GO:GO:0005524
GO:GO:0005737 GO:GO:0045893 GO:GO:0000079 GO:GO:0005730
GO:GO:0016605 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006310 GO:GO:0001673 GO:GO:0003697 GO:GO:0016363
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GO:GO:0000781 GO:GO:0000723 GO:GO:0005657
GeneTree:ENSGT00550000074520 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000800 GO:GO:0045120
GO:GO:0000405 GO:GO:0009378 GO:GO:0051880 GO:GO:0051782
GO:GO:0045950 GO:GO:0046641 GO:GO:0051098 GO:GO:0031297
EMBL:AADN02038832 IPI:IPI00585933 Ensembl:ENSGALT00000013437
OMA:CDTTAAI ArrayExpress:F1P3V1 Uniprot:F1P3V1
Length = 1380
Score = 616 (221.9 bits), Expect = 6.4e-59, P = 6.4e-59
Identities = 147/386 (38%), Positives = 211/386 (54%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ + FG FR Q + I + DC ++M TG GKSLCYQLP V+ +V+S
Sbjct: 623 MLKIFHRKFGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTVVIS 682
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSS-----VQTKAETGYFQLLFMTPEKACIIP 115
PL SL+ DQV LK I A +L TD+ +Q + +LL++TPEK C
Sbjct: 683 PLRSLIIDQVQKLKTLDIAATYLTGDITDADASKTYMQLSKKDPIIKLLYVTPEKVCASN 742
Query: 116 --ISFWSKLL-KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATAT 172
+S L + + F +DEAHC+S+WGHDFR +YK+L+ LR VP +ALTATA
Sbjct: 743 RLLSALENLYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKFHSVPMMALTATAN 802
Query: 173 EKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSII 232
+V+ DI N L++ P V SF+R NL Y V + +D L E +K S I
Sbjct: 803 PRVQKDIQNQLEMLKPQVFTMSFNRHNLKYDVLPKKPKKVAMDCL--EWIKKYHPHDSGI 860
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDE-IRVMVATMAFGMG 291
+YC++ + + + L++ G+ A YH + R+ + ++ E +V+ AT+AFGMG
Sbjct: 861 IYCLSRHECDTTAAILQKEGLAALAYHAGLTDSNRDLVQKKWVNQEGCQVICATIAFGMG 920
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD--FYCGESQT 349
IDKPDVR+VIH PK++E YYQESGR GRDG S C L+Y+ S+ + +
Sbjct: 921 IDKPDVRYVIHASLPKSIEGYYQESGRAGRDGEMSHCLLFYSYSDVTRLRRLILMEKDGN 980
Query: 350 ENQRTAIMESLLAAQRYCL-LTTCRR 374
+ R +L + YC + CRR
Sbjct: 981 SHTRQTHFNNLYSMVHYCENVVDCRR 1006
>UNIPROTKB|Q9I920 [details] [associations]
symbol:BLM "Bloom syndrome protein homolog" species:9031
"Gallus gallus" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000729 "DNA
double-strand break processing" evidence=ISS] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR012532 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF08072 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006310
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 eggNOG:COG0514 Gene3D:1.10.150.80 SUPFAM:SSF47819
TIGRFAMs:TIGR00614 EMBL:AB040747 IPI:IPI00575589 UniGene:Gga.1914
ProteinModelPortal:Q9I920 STRING:Q9I920 PRIDE:Q9I920
HOGENOM:HOG000095239 HOVERGEN:HBG004850 InParanoid:Q9I920
OrthoDB:EOG4640B3 GO:GO:0000729 Uniprot:Q9I920
Length = 1142
Score = 610 (219.8 bits), Expect = 1.6e-58, P = 1.6e-58
Identities = 146/386 (37%), Positives = 210/386 (54%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ + FG FR Q + I + DC ++M TG GKSLCYQLP V+ +V+S
Sbjct: 385 MLKIFHRKFGLHSFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTVVIS 444
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSS-----VQTKAETGYFQLLFMTPEKACIIP 115
PL SL+ DQV LK I A +L TD+ +Q + +LL++TPEK C
Sbjct: 445 PLRSLIIDQVQKLKTLDIAATYLTGDITDADASKTYMQLSKKDPIIKLLYVTPEKVCASN 504
Query: 116 --ISFWSKLL-KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATAT 172
+S L + + F +DEAHC+S+WGHDFR +YK+L+ LR VP +ALTATA
Sbjct: 505 RLLSALENLYDRKLLARFVIDEAHCVSQWGHDFRKDYKRLNMLRKKFHSVPMMALTATAN 564
Query: 173 EKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSII 232
+V+ DI N L++ P V SF+R NL Y V + +D L E +K S I
Sbjct: 565 PRVQKDIQNQLEMLKPQVFTMSFNRHNLKYDVLPKKPKKVAMDCL--EWIKKYHPHDSGI 622
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDE-IRVMVATMAFGMG 291
+YC++ + + + L++ G+ A YH + R+ + ++ E +V+ AT+AFGMG
Sbjct: 623 IYCLSRHECDTTAAILQKEGLAALAYHAGLTDSNRDLVQKKWVNQEGCQVICATIAFGMG 682
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD--FYCGESQT 349
IDKPDVR+VIH PK++E YY ESGR GRDG S C L+Y+ S+ + +
Sbjct: 683 IDKPDVRYVIHASLPKSVEGYYHESGRAGRDGEMSHCLLFYSYSDVTRLRRLILMEKDGN 742
Query: 350 ENQRTAIMESLLAAQRYCL-LTTCRR 374
+ R +L + YC + CRR
Sbjct: 743 SHTRQTHFNNLYSMVHYCENVVDCRR 768
>TIGR_CMR|SPO_0107 [details] [associations]
symbol:SPO_0107 "ATP-dependent DNA helicase RecQ"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] InterPro:IPR001650 InterPro:IPR002121
InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR010997
InterPro:IPR011545 InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271
Pfam:PF00570 Pfam:PF09382 PROSITE:PS50967 PROSITE:PS51194
SMART:SM00341 SMART:SM00490 SMART:SM00956 GO:GO:0005524
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614
GO:GO:0009432 HOGENOM:HOG000044388 KO:K03654 TIGRFAMs:TIGR01389
OMA:YCLSRAK RefSeq:YP_165381.1 ProteinModelPortal:Q5LWQ8
GeneID:3194995 KEGG:sil:SPO0107 PATRIC:23373451
ProtClustDB:CLSK933158 Uniprot:Q5LWQ8
Length = 679
Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
Identities = 138/326 (42%), Positives = 194/326 (59%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ FG+ FRP Q+++ Q + E + L +M TG GKSLC+QLP L+ +V+SPLI+
Sbjct: 8 LRDVFGFDAFRPGQEEIAQAVAEGENVLAIMPTGGGKSLCFQLPALMREGVTVVISPLIA 67
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQT---KAETGYFQLLFMTPEKACIIPISFWSK 121
LM+DQV SL++ G+ A L S T + E G +LL+M PE+ + +
Sbjct: 68 LMRDQVRSLQEAGVEAGALTSGNTPEETEAVWQALEAGRLKLLYMAPER--LASGAAMGM 125
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
L + GV L AVDEAHC+S+WGHDFR +Y ++ +LR LGVP A TATA + + +I+
Sbjct: 126 LRRIGVSLIAVDEAHCVSQWGHDFRPDYLRIGELRR-ALGVPLAAFTATADAETQAEIVA 184
Query: 182 SL-KLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGA--G-SIIVYCMT 237
L + P + FDR N I+ + D ++IL AGA G S IVYC T
Sbjct: 185 KLFDGEEPRSFLRGFDRPN-------IHLAFAAKDSPRRQIL-DFAGARRGQSGIVYCGT 236
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
E +++AL++ G A YHG M ++ R F R++ ++VAT+AFGMGIDKPD+
Sbjct: 237 RAKTETLAQALREDGHSACHYHGGMEAEDRRIVETRFAREDGLIVVATVAFGMGIDKPDI 296
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDG 323
R V H PK++E+YYQE GR GRDG
Sbjct: 297 RWVAHADLPKSIEAYYQEIGRAGRDG 322
>DICTYBASE|DDB_G0272384 [details] [associations]
symbol:DDB_G0272384 "Bloom syndrome-like protein"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0272384 GO:GO:0005524
GO:GO:0005634 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 EMBL:AAFI02000008 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 KO:K10901
TIGRFAMs:TIGR00614 RefSeq:XP_645178.2 ProteinModelPortal:Q55A06
EnsemblProtists:DDB0233085 GeneID:8618350 KEGG:ddi:DDB_G0272384
OMA:YQQTGRA Uniprot:Q55A06
Length = 973
Score = 594 (214.2 bits), Expect = 4.2e-57, P = 4.2e-57
Identities = 135/352 (38%), Positives = 203/352 (57%)
Query: 1 MVSTLKK-YFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGK-TALV 58
+V T + FG FR Q + I I+ RD V + TG GKSLC+Q+P +V + V
Sbjct: 465 LVETCNRDIFGNKEFRNLQIEAINSILHDRDTFVSLPTGGGKSLCFQIPSIVDHRGVTFV 524
Query: 59 VSPLISLMQDQVMSLKQRGINAEFL---GSAQTDSSVQTK---AETGYFQLLFMTPEKAC 112
+SPL++LMQDQV LK GI AE + GS + + V + ET +L+++TPE+
Sbjct: 525 ISPLLALMQDQVHKLKSLGIPAESINSSGSQRENRDVLDQLLNGETCKLKLIYITPERLA 584
Query: 113 IIP-ISFWSKLLKAG-VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTAT 170
+ +L G + VDEAHCISEWGH FR +Y+ + R VP A TA+
Sbjct: 585 QSEFLHLLDQLYDQGRLRRLVVDEAHCISEWGHSFRPKYRLISTFRDRFPSVPISAFTAS 644
Query: 171 ATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGA-- 228
AT V IDI NSLK+ NP +SF R NL Y V+ + QS + L+++I ++
Sbjct: 645 ATPNVEIDIKNSLKMVNPITINSSFLRPNLLYQVR---QKQSDEESLLKDIYNFISFKYP 701
Query: 229 -GSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA 287
+ I+YC T+++ E ++ L + G+ + YH ++ + R + + + E +++ T+A
Sbjct: 702 NSTGIIYCATVRECEIVADYLSERGLSSNFYHAKLSNTQRSKLQKDWTNGEFKIVCTTIA 761
Query: 288 FGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAK 339
FGMGIDK D R VIH+ P+++ESYYQ++GR GRDG S C L+Y +S+ +
Sbjct: 762 FGMGIDKGDTRFVIHHSMPQSMESYYQQTGRAGRDGKHSDCLLFYNKSDLMR 813
>UNIPROTKB|E1BKM5 [details] [associations]
symbol:RECQL5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0031965
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016591
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
CTD:9400 KO:K10902 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
EMBL:DAAA02049519 IPI:IPI00698201 RefSeq:NP_001179255.1
UniGene:Bt.62459 Ensembl:ENSBTAT00000015555 GeneID:512590
KEGG:bta:512590 OMA:DPKIEEF NextBio:20870462 Uniprot:E1BKM5
Length = 987
Score = 590 (212.7 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 142/352 (40%), Positives = 205/352 (58%)
Query: 3 STLKKYFGYSVFR-PYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
STLKK FG+ F+ P Q+ I +++ +D V M TG+GKSLCYQLP L+ +VVS
Sbjct: 17 STLKKVFGFDSFKTPLQEKAIMAVVKGDKDVFVCMPTGAGKSLCYQLPALLAKGITIVVS 76
Query: 61 PLISLMQDQV---MSLKQR--GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIP 115
PLI+L+QDQV ++LK R +N++ + + + E +LL++TPE A
Sbjct: 77 PLIALIQDQVDHLLALKVRVSSLNSKLSVQERKELLSDLEQEKPQTKLLYITPEMAASTS 136
Query: 116 IS-FWSKLLKAGVCLF-AVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATE 173
+ L+ + + VDEAHC+S+WGHDFR +Y +L LR+ L P VALTATAT
Sbjct: 137 FQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLADAPCVALTATATP 196
Query: 174 KVRIDIINSLKLKNPYVTIAS-FDRKNLFYGV--KVI------NRGQSFVDELVQEILKS 224
+VR D+ +L LK P T + R NLFY V K + N + L Q+ K
Sbjct: 197 QVREDVFAALHLKQPVATFKTPCFRANLFYDVQFKELLPDPYGNLRDFCLKALGQKADKG 256
Query: 225 VAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVA 284
++G G I+YC T + E+++ L GV A YH + + R ++ +++ V+VA
Sbjct: 257 LSGCG--IIYCRTREACEQLATELSYRGVNAKAYHAGLKAPERTLVQNEWMEEKVPVIVA 314
Query: 285 TMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336
T++FGMG+DK +VR V H+ K++ YYQESGR GRDG S C LYY+RS+
Sbjct: 315 TISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRSD 366
>UNIPROTKB|I3LFW3 [details] [associations]
symbol:RECQL5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0016591
"DNA-directed RNA polymerase II, holoenzyme" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0031965
GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016591 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:FP565693
Ensembl:ENSSSCT00000025315 OMA:DALIIMP Uniprot:I3LFW3
Length = 432
Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
Identities = 142/352 (40%), Positives = 202/352 (57%)
Query: 3 STLKKYFGYSVFR-PYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
STLKK FG+ F+ P Q+ I +++ +D V M TG+GKSLCYQLP L+ +V+S
Sbjct: 14 STLKKVFGFDSFKTPLQESAIMAVVKGDKDVFVCMPTGAGKSLCYQLPALLAKGITIVIS 73
Query: 61 PLISLMQDQV---MSLKQR--GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIP 115
PLI+L+QDQV ++LK +N++ + + + E +LL++TPE A
Sbjct: 74 PLIALIQDQVDHLLALKIHVCSLNSKLSAQERKELLSDLEQEKPRTKLLYITPEMAASAS 133
Query: 116 ISFWSKLLKAGVCL--FAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATE 173
K L A L VDEAHC+S+WGHDFR +Y +L LR+ L P VALTATAT
Sbjct: 134 FQPTLKSLLARHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLAHAPCVALTATATL 193
Query: 174 KVRIDIINSLKLKNPYVTIAS-FDRKNLFYGV--KVI------NRGQSFVDELVQEILKS 224
+V+ D+ +L LK P T + R NLFY V K + N + L Q+ K
Sbjct: 194 QVQEDVFAALHLKQPVATFKTPCFRANLFYDVQFKELLSDPYGNLRDFCLKALGQKADKG 253
Query: 225 VAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVA 284
++G G IVYC T + E+++ L GV A YH + + R ++ ++ V+VA
Sbjct: 254 LSGCG--IVYCRTREACEQLAIELSARGVNAKAYHAGLKAAERTLVQNEWMEGKVPVIVA 311
Query: 285 TMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336
T++FGMG+DK +VR V H+ K++ YYQESGR GRDG S C LYY+R++
Sbjct: 312 TISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGRPSWCRLYYSRND 363
>POMBASE|SPAC2G11.12 [details] [associations]
symbol:rqh1 "RecQ type DNA helicase Rqh1" species:4896
"Schizosaccharomyces pombe" [GO:0000723 "telomere maintenance"
evidence=IGI;IMP] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=IGI] [GO:0000725
"recombinational repair" evidence=IGI] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IC] [GO:0006268 "DNA unwinding
involved in replication" evidence=ISO] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0009650 "UV protection"
evidence=IMP] [GO:0031422 "RecQ helicase-Topo III complex"
evidence=IDA] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IDA] [GO:0034065 "replication fork processing at rDNA
locus" evidence=IGI] [GO:0043007 "maintenance of rDNA"
evidence=IMP] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0045950 "negative regulation of mitotic
recombination" evidence=IMP] [GO:0071140 "resolution of mitotic
recombination intermediates" evidence=IMP] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR010997 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382 PROSITE:PS00690
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 PomBase:SPAC2G11.12 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0043596 GO:GO:0000724 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000723
GO:GO:0007131 eggNOG:COG0514 KO:K10901 Gene3D:1.10.150.80
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 GO:GO:0045950 GO:GO:0031573
GO:GO:0009650 GO:GO:0006268 EMBL:Y09426 PIR:S62467
RefSeq:NP_593092.1 ProteinModelPortal:Q09811 STRING:Q09811
EnsemblFungi:SPAC2G11.12.1 GeneID:2541620 KEGG:spo:SPAC2G11.12
OrthoDB:EOG4XSPZ5 NextBio:20802714 GO:GO:0031422 GO:GO:0034065
GO:GO:0071140 Uniprot:Q09811
Length = 1328
Score = 588 (212.0 bits), Expect = 5.8e-56, P = 5.8e-56
Identities = 148/398 (37%), Positives = 222/398 (55%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTA---- 56
++ LK F FR Q + I + +D ++M TG GKSLCYQLP ++ G +
Sbjct: 507 VLGCLKHKFHLKGFRKNQLEAINGTLSGKDVFILMPTGGGKSLCYQLPAVIEGGASRGVT 566
Query: 57 LVVSPLISLMQDQVMSLKQRGI-NAEFLGSAQTDSSVQT----KAETGYFQLLFMTPE-- 109
LV+SPL+SLMQDQ+ L++ I + G D Q A+ +LL++TPE
Sbjct: 567 LVISPLLSLMQDQLDHLRKLNIPSLPLSGEQPADERRQVISFLMAKNVLVKLLYVTPEGL 626
Query: 110 --KACIIPI--SFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV 165
I + S + + L A + +DEAHC+S WGHDFR +YKQL LR G+PF+
Sbjct: 627 ASNGAITRVLKSLYERKLLARI---VIDEAHCVSHWGHDFRPDYKQLGLLRDRYQGIPFM 683
Query: 166 ALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSV 225
ALTATA E V+ DIIN+L+++N +SF+R NLFY +K + EL + I
Sbjct: 684 ALTATANEIVKKDIINTLRMENCLELKSSFNRPNLFYEIKP---KKDLYTELYRFISNGH 740
Query: 226 AGAGSIIVYCMTIKDVEEISKALKQ-LGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVA 284
II YC++ E+++ L+ G+KA YH + R+ + +++VA
Sbjct: 741 LHESGII-YCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVA 799
Query: 285 TMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN---FAK-- 339
T+AFGMG+DK DVR VIH+ PK+LE YYQE+GR GRDG + C ++Y+ + F K
Sbjct: 800 TIAFGMGVDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKPAHCIMFYSYKDHVTFQKLI 859
Query: 340 --GDFYCGESQTENQRTAIMESLLAAQRYCL-LTTCRR 374
GD G+++T+ ++ ++ ++ ++C T CRR
Sbjct: 860 MSGD---GDAETKERQRQMLRQVI---QFCENKTDCRR 891
>UNIPROTKB|J3KTQ2 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5
Ensembl:ENST00000578201 Uniprot:J3KTQ2
Length = 480
Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
Identities = 140/352 (39%), Positives = 207/352 (58%)
Query: 3 STLKKYFGYSVFR-PYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
STLKK FG+ F+ P Q+ +++ +D V M TG+GKSLCYQLP L+ +VVS
Sbjct: 18 STLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALLAKGITIVVS 77
Query: 61 PLISLMQDQV---MSLKQR--GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIP 115
PLI+L+QDQV ++LK R +N++ + + + E ++L++TPE A
Sbjct: 78 PLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYITPEMAASSS 137
Query: 116 IS-FWSKLLKAGVCLF-AVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATE 173
+ L+ + + VDEAHC+S+WGHDFR +Y +L LR+ L P VALTATAT
Sbjct: 138 FQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPCVALTATATP 197
Query: 174 KVRIDIINSLKLKNPYVTIAS-FDRKNLFYGVK---VINR--G--QSF-VDELVQEILKS 224
+V+ D+ +L LK P + R NLFY V+ +I+ G + F + L QE K
Sbjct: 198 QVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLKALGQEADKG 257
Query: 225 VAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVA 284
++G G IVYC T + E+++ L GV A YH + + R ++ +++ V+VA
Sbjct: 258 LSGCG--IVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEEKVPVIVA 315
Query: 285 TMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336
T++FGMG+DK +VR V H+ K++ YYQESGR GRDG S C LYY+R++
Sbjct: 316 TISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRND 367
>UNIPROTKB|O94762 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=NAS] [GO:0005654 "nucleoplasm" evidence=NAS] [GO:0005737
"cytoplasm" evidence=IDA;NAS] [GO:0006259 "DNA metabolic process"
evidence=NAS] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0032508 "DNA duplex unwinding" evidence=NAS;TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0031965 "nuclear membrane" evidence=IDA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0005730
GO:GO:0006281 GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0016591 eggNOG:COG0514
TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:AB006533 EMBL:AF135183
EMBL:AB042823 EMBL:AB042824 EMBL:AB042825 EMBL:BC016911
EMBL:AL136869 IPI:IPI00220819 IPI:IPI00220820 IPI:IPI01015246
RefSeq:NP_001003715.1 RefSeq:NP_001003716.1 RefSeq:NP_004250.4
UniGene:Hs.632229 ProteinModelPortal:O94762 SMR:O94762
DIP:DIP-32964N IntAct:O94762 MINT:MINT-1378331 STRING:O94762
PhosphoSite:O94762 PaxDb:O94762 PRIDE:O94762
Ensembl:ENST00000317905 Ensembl:ENST00000340830
Ensembl:ENST00000420326 Ensembl:ENST00000584999 GeneID:9400
KEGG:hsa:9400 UCSC:uc002joz.4 UCSC:uc002jpb.2 UCSC:uc010dgl.3
CTD:9400 GeneCards:GC17M073622 HGNC:HGNC:9950 HPA:HPA029970
HPA:HPA029971 MIM:603781 neXtProt:NX_O94762 PharmGKB:PA34317
HOGENOM:HOG000206773 HOVERGEN:HBG057065 InParanoid:O94762 KO:K10902
OrthoDB:EOG46WZ7X PhylomeDB:O94762 ChiTaRS:RECQL5 GenomeRNAi:9400
NextBio:35211 ArrayExpress:O94762 Bgee:O94762 CleanEx:HS_RECQL5
Genevestigator:O94762 GermOnline:ENSG00000108469 InterPro:IPR010716
Pfam:PF06959 ProDom:PD120154 Uniprot:O94762
Length = 991
Score = 574 (207.1 bits), Expect = 7.0e-55, P = 7.0e-55
Identities = 140/352 (39%), Positives = 207/352 (58%)
Query: 3 STLKKYFGYSVFR-PYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
STLKK FG+ F+ P Q+ +++ +D V M TG+GKSLCYQLP L+ +VVS
Sbjct: 18 STLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALLAKGITIVVS 77
Query: 61 PLISLMQDQV---MSLKQR--GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIP 115
PLI+L+QDQV ++LK R +N++ + + + E ++L++TPE A
Sbjct: 78 PLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYITPEMAASSS 137
Query: 116 IS-FWSKLLKAGVCLF-AVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATE 173
+ L+ + + VDEAHC+S+WGHDFR +Y +L LR+ L P VALTATAT
Sbjct: 138 FQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPCVALTATATP 197
Query: 174 KVRIDIINSLKLKNPYVTIAS-FDRKNLFYGVK---VINR--G--QSF-VDELVQEILKS 224
+V+ D+ +L LK P + R NLFY V+ +I+ G + F + L QE K
Sbjct: 198 QVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLKALGQEADKG 257
Query: 225 VAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVA 284
++G G IVYC T + E+++ L GV A YH + + R ++ +++ V+VA
Sbjct: 258 LSGCG--IVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEEKVPVIVA 315
Query: 285 TMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336
T++FGMG+DK +VR V H+ K++ YYQESGR GRDG S C LYY+R++
Sbjct: 316 TISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRND 367
>UNIPROTKB|F1NWK5 [details] [associations]
symbol:F1NWK5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016591 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
OMA:DPKIEEF EMBL:AADN02029969 EMBL:AADN02029968 IPI:IPI00812208
Ensembl:ENSGALT00000003814 ArrayExpress:F1NWK5 Uniprot:F1NWK5
Length = 1023
Score = 556 (200.8 bits), Expect = 1.5e-54, Sum P(2) = 1.5e-54
Identities = 135/362 (37%), Positives = 213/362 (58%)
Query: 18 QKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQV---MSL 73
Q+ ++ ++D V M TG+GKSLCYQLP ++ +V+SPLI+L+QDQV ++L
Sbjct: 39 QESATMAVVRGEKDVFVCMPTGAGKSLCYQLPAVLAVGITIVISPLIALIQDQVDHLLAL 98
Query: 74 KQRGINAEFLGSAQTDSSV--QTKAETGYFQLLFMTPEKACIIPIS-FWSKLLKAGVCLF 130
K + + SAQ ++ +E +LL++TPE A + L+ + +
Sbjct: 99 KIKACSLNSKLSAQEKKTILADLASEKPQIKLLYITPEMAAASSFQPTLNSLVSRNLLSY 158
Query: 131 AV-DEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPY 189
+ DEAHC+S+WGHDFR +Y +L LRT + P VALTATAT++V+ DI+ +LKLK P
Sbjct: 159 LIIDEAHCVSQWGHDFRPDYLRLGTLRTRIPNTPCVALTATATKQVQDDIVTALKLKQPL 218
Query: 190 VTIAS--FDRKNLFYGVK----VINRGQSFVDELVQEI-LKSVAG--AGSIIVYCMTIKD 240
T + F R NLFY V+ + + + D ++ + +K+ G +G IVYC ++D
Sbjct: 219 ATFKTPCF-RSNLFYDVQFKELLTDPYANLKDFCLKALEVKNTTGVYSGCGIVYCR-MRD 276
Query: 241 V-EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V ++++ L GVKA YH + + R ++ ++I V+VAT++FGMG+DK +VR
Sbjct: 277 VCDQLAIELSYRGVKAKAYHAGLKAADRTSVQNEWMEEKIPVIVATISFGMGVDKANVRF 336
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGE--SQTENQRTAIM 357
V H+ K++ YYQESGR GRDG S C LYY+R++ + F + S+ + ++ +
Sbjct: 337 VAHWNIAKSMAGYYQESGRAGRDGKPSCCRLYYSRNDRDQVSFLIKKELSKIQEKKGTLK 396
Query: 358 ES 359
ES
Sbjct: 397 ES 398
Score = 42 (19.8 bits), Expect = 1.5e-54, Sum P(2) = 1.5e-54
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 338 AKGDFYCGESQTENQRTAIMESLLAAQ 364
A G+ G+SQ EN+ E +L +
Sbjct: 812 ASGEDVTGQSQGENEELGETEEMLTGR 838
>ZFIN|ZDB-GENE-050809-134 [details] [associations]
symbol:recql "RecQ protein-like (DNA helicase
Q1-like)" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 InterPro:IPR018982
Pfam:PF00270 Pfam:PF00271 Pfam:PF09382 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-050809-134 GO:GO:0005524 GO:GO:0006260
GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
EMBL:BX914215 IPI:IPI00933301 Ensembl:ENSDART00000101198
Uniprot:F1Q4T3
Length = 640
Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
Identities = 141/376 (37%), Positives = 206/376 (54%)
Query: 9 FGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQD 68
F S FRP Q+ I + +D +VM TG GKSLCYQLP L + LV++PL+SLM+D
Sbjct: 93 FQLSKFRPLQRAAINLSMSGKDLFLVMPTGRGKSLCYQLPALCSKGFTLVIAPLVSLMED 152
Query: 69 QVMSLKQRGINAEFLG-SAQTDSSVQTKA----ETGYFQLLFMTPEKACIIPISFWSKLL 123
Q+M L+ + A L S+ + S + A + F+LL++TPEK + SKL
Sbjct: 153 QLMYLQSVNVPAVTLNASSSKEDSKRILAGMTDKNSPFKLLYVTPEKIAKSKL-LMSKLE 211
Query: 124 KA---GVCL-FAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
KA G+ AVDE HC S+WGHDFR +YK L L+ VP + LTATAT V D
Sbjct: 212 KAFNMGLLARIAVDEVHCCSQWGHDFRPDYKLLGILKRQFPNVPLIGLTATATSNVLKDC 271
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
L ++ P A F+R NL+Y V+ + D++ +++ S IVY + K
Sbjct: 272 QKILCVQEPVTLTAPFNRPNLYYEVR-FKDNEDCTDQIAS-LIRGRYKNQSGIVYVFSQK 329
Query: 240 DVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
D E ++ L++ + A YH M + H+ + +I+V+VAT+AFGMGIDK DVR
Sbjct: 330 DAEVVATELQKRDIVAQPYHANMEPSHKSLVHQRWSSKKIQVVVATVAFGMGIDKADVRF 389
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMES 359
VIH+ K++E+YYQESGR GRD + C +++ + + T Q+ + +
Sbjct: 390 VIHHTISKSIENYYQESGRAGRDDSPADCIVFFGFMDIFRISTMVVMENTGQQK---LHN 446
Query: 360 LLAAQRYCL-LTTCRR 374
++A YC + CRR
Sbjct: 447 MVA---YCQNVDRCRR 459
>UNIPROTKB|F1NT69 [details] [associations]
symbol:F1NT69 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=IEA] [GO:0031965 "nuclear membrane" evidence=IEA]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0031965 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016591 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 EMBL:AADN02029969 EMBL:AADN02029968 IPI:IPI00819481
ProteinModelPortal:F1NT69 Ensembl:ENSGALT00000038980
ArrayExpress:F1NT69 Uniprot:F1NT69
Length = 451
Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
Identities = 135/362 (37%), Positives = 213/362 (58%)
Query: 18 QKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQV---MSL 73
Q+ ++ ++D V M TG+GKSLCYQLP ++ +V+SPLI+L+QDQV ++L
Sbjct: 39 QESATMAVVRGEKDVFVCMPTGAGKSLCYQLPAVLAVGITIVISPLIALIQDQVDHLLAL 98
Query: 74 KQRGINAEFLGSAQTDSSV--QTKAETGYFQLLFMTPEKACIIPIS-FWSKLLKAGVCLF 130
K + + SAQ ++ +E +LL++TPE A + L+ + +
Sbjct: 99 KIKACSLNSKLSAQEKKTILADLASEKPQIKLLYITPEMAAASSFQPTLNSLVSRNLLSY 158
Query: 131 AV-DEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPY 189
+ DEAHC+S+WGHDFR +Y +L LRT + P VALTATAT++V+ DI+ +LKLK P
Sbjct: 159 LIIDEAHCVSQWGHDFRPDYLRLGTLRTRIPNTPCVALTATATKQVQDDIVTALKLKQPL 218
Query: 190 VTIAS--FDRKNLFYGVK----VINRGQSFVDELVQEI-LKSVAG--AGSIIVYCMTIKD 240
T + F R NLFY V+ + + + D ++ + +K+ G +G IVYC ++D
Sbjct: 219 ATFKTPCF-RSNLFYDVQFKELLTDPYANLKDFCLKALEVKNTTGVYSGCGIVYCR-MRD 276
Query: 241 V-EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRH 299
V ++++ L GVKA YH + + R ++ ++I V+VAT++FGMG+DK +VR
Sbjct: 277 VCDQLAIELSYRGVKAKAYHAGLKAADRTSVQNEWMEEKIPVIVATISFGMGVDKANVRF 336
Query: 300 VIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGE--SQTENQRTAIM 357
V H+ K++ YYQESGR GRDG S C LYY+R++ + F + S+ + ++ +
Sbjct: 337 VAHWNIAKSMAGYYQESGRAGRDGKPSCCRLYYSRNDRDQVSFLIKKELSKIQEKKGTLK 396
Query: 358 ES 359
ES
Sbjct: 397 ES 398
>UNIPROTKB|Q47WD5 [details] [associations]
symbol:CPS_4237 "RecQ domain protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 TIGRFAMs:TIGR00614
GO:GO:0008026 HOGENOM:HOG000044388 KO:K03654 RefSeq:YP_270887.1
ProteinModelPortal:Q47WD5 STRING:Q47WD5 GeneID:3521770
KEGG:cps:CPS_4237 PATRIC:21471339 OMA:GHNFRPD
ProtClustDB:CLSK906704 BioCyc:CPSY167879:GI48-4247-MONOMER
Uniprot:Q47WD5
Length = 690
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 126/331 (38%), Positives = 189/331 (57%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
++L + FG+ FRP Q+ I ++++ + L + TGSGKSLCYQL L LVVSPL
Sbjct: 15 ASLLETFGFDGFRPGQEQTITQLLKGQSSLSIFPTGSGKSLCYQLTALHLPHLTLVVSPL 74
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFW 119
++LM+DQ+ L +GI A + S + QT G ++L ++ E+ F
Sbjct: 75 LALMKDQLSFLASKGIKAASIDSTLKGNEAQTVMAGVRDGDIKVLMVSVER--FKNERFR 132
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVAL-TATATEKVRID 178
+ V + VDEAHCISEWGH+FR +Y +L L + V L TATAT KV+ D
Sbjct: 133 QFIESVPVSMLVVDEAHCISEWGHNFRPDYLKLPSYCQ-ALNISLVLLLTATATRKVKQD 191
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
+ +++ ++ F R NL V + Q+ ++ +++I+ + GAG IVY
Sbjct: 192 MAAKFAIRDEHIVQTGFYRSNLDLSVLPVT--QAHKNKQLEQIISAQQGAG--IVYVTLQ 247
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
E +++ LKQ G+ A YH S R + + F+ +I+V+VAT+AFGMGIDK ++R
Sbjct: 248 HSAETVAQYLKQQGINACAYHAGFDSDTRSQIQQDFMAGKIQVIVATIAFGMGIDKSNIR 307
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCW 329
VIHY PK++E+Y QE GR GRDG+ S C+
Sbjct: 308 FVIHYDLPKSIENYSQEIGRAGRDGLPSQCF 338
>UNIPROTKB|Q8EEK1 [details] [associations]
symbol:SO_2380 "ATP-dependent DNA helicase RecQ family"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
OMA:GHNFRPD ProtClustDB:CLSK906704 RefSeq:NP_717970.1
ProteinModelPortal:Q8EEK1 GeneID:1170099 KEGG:son:SO_2380
PATRIC:23524381 Uniprot:Q8EEK1
Length = 654
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 129/333 (38%), Positives = 188/333 (56%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++S L++ FG+S FRP Q +VI +++ + L + TGSGKSLCYQ L LVVS
Sbjct: 14 LISRLQQQFGFSEFRPGQGEVITQLLAGQSSLAIFPTGSGKSLCYQFTALQLPHLTLVVS 73
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQT---KAETGYFQLLFMTPEKACIIPIS 117
PL++L++DQ+ L+Q+GI A + S T Q +A +G +LL ++ E+
Sbjct: 74 PLLALIKDQLNFLQQKGIKAASIDSTLTPEQTQQVMREARSGQLKLLMVSVER--FKNER 131
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQL-DKLRTFLLGVPFVAL-TATATEKV 175
F + + + VDEAHCISEWGH+FR +Y +L D R L +P V L TATAT KV
Sbjct: 132 FRQFIQSIPLSMLVVDEAHCISEWGHNFRPDYLKLPDYCRE--LSIPLVLLLTATATRKV 189
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYC 235
+ D+ +K ++ F R NL V + ++++ L+S GAG IVY
Sbjct: 190 KQDMAIRFDIKPQHIVQTGFYRSNLDLTVLPVASENKL--RILKQQLQSFDGAG--IVYV 245
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
EE++ L +G A YH R++ F+ + +++VAT+AFGMGIDK
Sbjct: 246 TLQHTAEEVASQLCSMGFVAQAYHAGFDDDKRQQIQHDFMLGQTQIVVATIAFGMGIDKS 305
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVC 328
++R VIHY PK++E+Y QE GR GRDG S C
Sbjct: 306 NIRFVIHYDLPKSIENYCQEIGRAGRDGQLSHC 338
>TIGR_CMR|CPS_4237 [details] [associations]
symbol:CPS_4237 "RecQ domain protein" species:167879
"Colwellia psychrerythraea 34H" [GO:0003674 "molecular_function"
evidence=ND] [GO:0004386 "helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514 TIGRFAMs:TIGR00614
GO:GO:0008026 HOGENOM:HOG000044388 KO:K03654 RefSeq:YP_270887.1
ProteinModelPortal:Q47WD5 STRING:Q47WD5 GeneID:3521770
KEGG:cps:CPS_4237 PATRIC:21471339 OMA:GHNFRPD
ProtClustDB:CLSK906704 BioCyc:CPSY167879:GI48-4247-MONOMER
Uniprot:Q47WD5
Length = 690
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 126/331 (38%), Positives = 189/331 (57%)
Query: 3 STLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPL 62
++L + FG+ FRP Q+ I ++++ + L + TGSGKSLCYQL L LVVSPL
Sbjct: 15 ASLLETFGFDGFRPGQEQTITQLLKGQSSLSIFPTGSGKSLCYQLTALHLPHLTLVVSPL 74
Query: 63 ISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTK---AETGYFQLLFMTPEKACIIPISFW 119
++LM+DQ+ L +GI A + S + QT G ++L ++ E+ F
Sbjct: 75 LALMKDQLSFLASKGIKAASIDSTLKGNEAQTVMAGVRDGDIKVLMVSVER--FKNERFR 132
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVAL-TATATEKVRID 178
+ V + VDEAHCISEWGH+FR +Y +L L + V L TATAT KV+ D
Sbjct: 133 QFIESVPVSMLVVDEAHCISEWGHNFRPDYLKLPSYCQ-ALNISLVLLLTATATRKVKQD 191
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
+ +++ ++ F R NL V + Q+ ++ +++I+ + GAG IVY
Sbjct: 192 MAAKFAIRDEHIVQTGFYRSNLDLSVLPVT--QAHKNKQLEQIISAQQGAG--IVYVTLQ 247
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
E +++ LKQ G+ A YH S R + + F+ +I+V+VAT+AFGMGIDK ++R
Sbjct: 248 HSAETVAQYLKQQGINACAYHAGFDSDTRSQIQQDFMAGKIQVIVATIAFGMGIDKSNIR 307
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCW 329
VIHY PK++E+Y QE GR GRDG+ S C+
Sbjct: 308 FVIHYDLPKSIENYSQEIGRAGRDGLPSQCF 338
>TIGR_CMR|SO_2380 [details] [associations]
symbol:SO_2380 "RecQ domain protein" species:211586
"Shewanella oneidensis MR-1" [GO:0003674 "molecular_function"
evidence=ND] [GO:0006310 "DNA recombination" evidence=ISS]
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614 GO:GO:0008026
HSSP:P15043 HOGENOM:HOG000044388 KO:K03654 OMA:GHNFRPD
ProtClustDB:CLSK906704 RefSeq:NP_717970.1 ProteinModelPortal:Q8EEK1
GeneID:1170099 KEGG:son:SO_2380 PATRIC:23524381 Uniprot:Q8EEK1
Length = 654
Score = 541 (195.5 bits), Expect = 3.5e-52, P = 3.5e-52
Identities = 129/333 (38%), Positives = 188/333 (56%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
++S L++ FG+S FRP Q +VI +++ + L + TGSGKSLCYQ L LVVS
Sbjct: 14 LISRLQQQFGFSEFRPGQGEVITQLLAGQSSLAIFPTGSGKSLCYQFTALQLPHLTLVVS 73
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQT---KAETGYFQLLFMTPEKACIIPIS 117
PL++L++DQ+ L+Q+GI A + S T Q +A +G +LL ++ E+
Sbjct: 74 PLLALIKDQLNFLQQKGIKAASIDSTLTPEQTQQVMREARSGQLKLLMVSVER--FKNER 131
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQL-DKLRTFLLGVPFVAL-TATATEKV 175
F + + + VDEAHCISEWGH+FR +Y +L D R L +P V L TATAT KV
Sbjct: 132 FRQFIQSIPLSMLVVDEAHCISEWGHNFRPDYLKLPDYCRE--LSIPLVLLLTATATRKV 189
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYC 235
+ D+ +K ++ F R NL V + ++++ L+S GAG IVY
Sbjct: 190 KQDMAIRFDIKPQHIVQTGFYRSNLDLTVLPVASENKL--RILKQQLQSFDGAG--IVYV 245
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
EE++ L +G A YH R++ F+ + +++VAT+AFGMGIDK
Sbjct: 246 TLQHTAEEVASQLCSMGFVAQAYHAGFDDDKRQQIQHDFMLGQTQIVVATIAFGMGIDKS 305
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVC 328
++R VIHY PK++E+Y QE GR GRDG S C
Sbjct: 306 NIRFVIHYDLPKSIENYCQEIGRAGRDGQLSHC 338
>TIGR_CMR|BA_1505 [details] [associations]
symbol:BA_1505 "ATP-dependent DNA helicase RecQ"
species:198094 "Bacillus anthracis str. Ames" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 TIGRFAMs:TIGR00614
GO:GO:0008026 HSSP:P15043 HOGENOM:HOG000044388 KO:K03654
OMA:DALIIMP RefSeq:NP_843957.1 RefSeq:YP_018128.2
RefSeq:YP_027663.1 ProteinModelPortal:Q81SY8 DNASU:1087356
EnsemblBacteria:EBBACT00000009666 EnsemblBacteria:EBBACT00000015103
EnsemblBacteria:EBBACT00000023330 GeneID:1087356 GeneID:2817068
GeneID:2848363 KEGG:ban:BA_1505 KEGG:bar:GBAA_1505 KEGG:bat:BAS1394
ProtClustDB:CLSK916267 BioCyc:BANT260799:GJAJ-1468-MONOMER
BioCyc:BANT261594:GJ7F-1530-MONOMER Uniprot:Q81SY8
Length = 509
Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
Identities = 126/330 (38%), Positives = 193/330 (58%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L K+FGYS FRP QK VI ++E +D + ++ TG GKS+CYQ P L+ T LVVSPL+S
Sbjct: 7 LYKWFGYSEFRPGQKGVITDLLEGKDVIAMLPTGRGKSMCYQFPGLMREGTVLVVSPLLS 66
Query: 65 LMQDQVMSLKQ--RGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKL 122
LM+DQV LK + F + + + ++ +F++PE + +L
Sbjct: 67 LMEDQVTQLKYVVKDRVIAFNSFRTLNEKREAMKKLSSYKFIFVSPEM--LQSELLIREL 124
Query: 123 LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRIDIIN 181
K + LF VDEAHCIS+WG+DFR +YK+L+ + + G P V ALTATAT+ V DI +
Sbjct: 125 KKIHISLFVVDEAHCISQWGYDFRPDYKKLNVVIENI-GSPTVLALTATATKGVLQDIAD 183
Query: 182 SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
SL LK + S DR N+ V+ + + + L+++++ + G G IVYC +
Sbjct: 184 SLNLKGAAEHVYSIDRPNIAMDVQFVETIEEKKEALLEQVMY-LQGPG--IVYCSSRAWT 240
Query: 242 EEISKALKQLGVKA-GTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
E +++ L+ GV YHG M + R + F+ +++++++ T AFGMG++K + R++
Sbjct: 241 ERLTEYLRGKGVTGVAFYHGGMEHEERMLIQQQFMNNQLQLVICTSAFGMGVNKANTRYI 300
Query: 301 IHYGCPKTLESYYQESGRCGRDGIASVCWL 330
IH+ P + SY QE GR GRDG S+ L
Sbjct: 301 IHFHYPTNIASYLQEIGRAGRDGEPSIAIL 330
>RGD|1310823 [details] [associations]
symbol:Recql5 "RecQ protein-like 5" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016591 "DNA-directed RNA polymerase II,
holoenzyme" evidence=IEA;ISO] [GO:0031965 "nuclear membrane"
evidence=IEA;ISO] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 RGD:1310823
GO:GO:0005524 GO:GO:0005730 GO:GO:0031965 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310 EMBL:CH473948
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016591
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
CTD:9400 KO:K10902 OrthoDB:EOG46WZ7X InterPro:IPR010716
Pfam:PF06959 ProDom:PD120154 OMA:DPKIEEF IPI:IPI00364336
RefSeq:NP_001099323.1 UniGene:Rn.198916 Ensembl:ENSRNOT00000007246
GeneID:287834 KEGG:rno:287834 NextBio:627111 Uniprot:D4ACP5
Length = 973
Score = 543 (196.2 bits), Expect = 1.5e-51, P = 1.5e-51
Identities = 129/340 (37%), Positives = 197/340 (57%)
Query: 16 PYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQV---M 71
P Q+ I +++ +D V M TG+GKSLCYQLP ++ +VVSPLI+L+QDQV +
Sbjct: 32 PLQESAIMAVVKGDKDVFVCMPTGAGKSLCYQLPAVLAKGITIVVSPLIALIQDQVDHLL 91
Query: 72 SLKQR--GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPIS-FWSKLLKAGVC 128
+LK + +N++ + + + + +LL++TPE A + LL +
Sbjct: 92 ALKVQVSSLNSKLSVQERKELLSDLERDKPRTKLLYITPEMAASASFQPTLNSLLSRNLL 151
Query: 129 LF-AVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKN 187
+ VDEAHC+S+WGHDFR +Y +L LR+ L P VALTATAT +V+ D+ +L LK
Sbjct: 152 SYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLAHAPCVALTATATPQVQEDVFAALHLKQ 211
Query: 188 PYVTIASFD----RKNLFYGVK-------VINRGQSFVDELVQEILKSVAGAGSIIVYCM 236
P +ASF R NLFY V+ V + F + + + + + +G IVYC
Sbjct: 212 P---VASFKTPCFRANLFYDVQFKELIPDVYGNLRDFCLKALGQKADNGSSSGCGIVYCR 268
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
T + E+++ L GV A YH + + R + ++ +++ V+VAT++FGMG+DK +
Sbjct: 269 TREACEQLAIELSSRGVNAKAYHAGLKASERTQVQNEWMEEKVPVIVATISFGMGVDKAN 328
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336
VR V H+ K++ YYQESGR GRDG S C LYY+R++
Sbjct: 329 VRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRND 368
Score = 361 (132.1 bits), Expect = 5.9e-32, P = 5.9e-32
Identities = 89/216 (41%), Positives = 129/216 (59%)
Query: 3 STLKKYFGYSVFR-PYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
STLKK FG+ F+ P Q+ I +++ +D V M TG+GKSLCYQLP ++ +VVS
Sbjct: 18 STLKKVFGFDSFKTPLQESAIMAVVKGDKDVFVCMPTGAGKSLCYQLPAVLAKGITIVVS 77
Query: 61 PLISLMQDQV---MSLKQR--GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIP 115
PLI+L+QDQV ++LK + +N++ + + + + +LL++TPE A
Sbjct: 78 PLIALIQDQVDHLLALKVQVSSLNSKLSVQERKELLSDLERDKPRTKLLYITPEMAASAS 137
Query: 116 IS-FWSKLLKAGVCLF-AVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATE 173
+ LL + + VDEAHC+S+WGHDFR +Y +L LR+ L P VALTATAT
Sbjct: 138 FQPTLNSLLSRNLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLAHAPCVALTATATP 197
Query: 174 KVRIDIINSLKLKNPYVTIASFD----RKNLFYGVK 205
+V+ D+ +L LK P +ASF R NLFY V+
Sbjct: 198 QVQEDVFAALHLKQP---VASFKTPCFRANLFYDVQ 230
>UNIPROTKB|F1PAG8 [details] [associations]
symbol:RECQL5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
CTD:9400 KO:K10902 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
OMA:DPKIEEF EMBL:AAEX03006295 RefSeq:XP_540436.2
Ensembl:ENSCAFT00000007842 GeneID:483317 KEGG:cfa:483317
Uniprot:F1PAG8
Length = 989
Score = 537 (194.1 bits), Expect = 7.2e-51, P = 7.2e-51
Identities = 131/340 (38%), Positives = 196/340 (57%)
Query: 16 PYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQV---M 71
P Q+ ++ +D V M TG+GKSLCYQLP L+ +VVSPLI+L+QDQV +
Sbjct: 28 PLQESATMAVVRGDKDVFVCMPTGAGKSLCYQLPALLAKGITIVVSPLIALIQDQVDHLL 87
Query: 72 SLKQR--GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFW---SKLLKAG 126
+LK R +N++ + + + E +LL++TPE A P SF + L+
Sbjct: 88 ALKVRVSSLNSKLSAQEKKELLSDLEREKPQTKLLYITPEMAAS-P-SFQPTLNSLVSRH 145
Query: 127 VCLF-AVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKL 185
+ + VDEAHC+S+WGHDFR +Y +L LR+ L P +ALTATAT +V+ D+ +L L
Sbjct: 146 LLSYLVVDEAHCVSQWGHDFRPDYLRLGTLRSRLAHAPCIALTATATLQVQEDVFAALHL 205
Query: 186 KNPYVTIAS--FDRKNLFYGVK---VINRGQSFVDELVQEILKSVAGAGSI----IVYCM 236
K P T + F R NLFY V+ +++ + + + L A G + IVYC
Sbjct: 206 KQPVATFKTPCF-RANLFYDVQFKELLSDPYGNLRDFCLKALGQKADKGLLSGCGIVYCR 264
Query: 237 TIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPD 296
T + E+++ L GV A YH + + R ++ +++ V+VAT++FGMG+DK +
Sbjct: 265 TREACEQLATELSYRGVNAKAYHAGLKASERTLVQNEWMEEKVPVIVATISFGMGVDKAN 324
Query: 297 VRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336
VR V H+ K++ YYQESGR GRDG S C LYY+R++
Sbjct: 325 VRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRND 364
Score = 362 (132.5 bits), Expect = 4.8e-32, P = 4.8e-32
Identities = 91/216 (42%), Positives = 129/216 (59%)
Query: 3 STLKKYFGYSVFR-PYQKDVIQRIIE-KRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
STLKK FG+ F+ P Q+ ++ +D V M TG+GKSLCYQLP L+ +VVS
Sbjct: 14 STLKKVFGFDSFKTPLQESATMAVVRGDKDVFVCMPTGAGKSLCYQLPALLAKGITIVVS 73
Query: 61 PLISLMQDQV---MSLKQR--GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIP 115
PLI+L+QDQV ++LK R +N++ + + + E +LL++TPE A P
Sbjct: 74 PLIALIQDQVDHLLALKVRVSSLNSKLSAQEKKELLSDLEREKPQTKLLYITPEMAAS-P 132
Query: 116 ISFW---SKLLKAGVCLF-AVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATA 171
SF + L+ + + VDEAHC+S+WGHDFR +Y +L LR+ L P +ALTATA
Sbjct: 133 -SFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGTLRSRLAHAPCIALTATA 191
Query: 172 TEKVRIDIINSLKLKNPYVTIAS--FDRKNLFYGVK 205
T +V+ D+ +L LK P T + F R NLFY V+
Sbjct: 192 TLQVQEDVFAALHLKQPVATFKTPCF-RANLFYDVQ 226
>GENEDB_PFALCIPARUM|PF14_0278 [details] [associations]
symbol:PF14_0278 "ATP-dependent DNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 EMBL:AE014187 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K01509 HSSP:P15043
RefSeq:XP_001348452.1 ProteinModelPortal:Q8ILG5
EnsemblProtists:PF14_0278:mRNA GeneID:811860 KEGG:pfa:PF14_0278
EuPathDB:PlasmoDB:PF3D7_1429900 ProtClustDB:CLSZ2501048
Uniprot:Q8ILG5
Length = 1440
Score = 530 (191.6 bits), Expect = 1.1e-49, P = 1.1e-49
Identities = 124/346 (35%), Positives = 201/346 (58%)
Query: 54 KTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQ--TDSSVQTKAETGYFQLLFMTPEKA 111
K +V+SPLISLM+DQV +L ++ I++ FLGS Q ++ + + + G +++++ +PE A
Sbjct: 95 KFTIVISPLISLMKDQVDNLNRKRISSVFLGSGQKMNNNKILNEIKHGIYKIVYCSPEYA 154
Query: 112 CIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATA 171
F LLK + L A+DE HC+SEWGHDFR Y++L++LR L +P + LTAT
Sbjct: 155 LNNKDVFI--LLKNRILLIAIDEVHCMSEWGHDFRPSYRKLNELRIILKEIPIMCLTATC 212
Query: 172 TEKVRIDIINSLK--LKNPYVTIASFDRKNLFYGVK----VINRGQSFVD----ELVQEI 221
T+ V+ DI+ +L L+N + +S ++KNLFY V+ + + + +D E ++
Sbjct: 213 TKNVQSDILKNLNFDLQNCLIKRSSVNKKNLFYSVREKTDIYHDLKDILDIPLKESIERT 272
Query: 222 LK-----SVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIR 276
K + S ++Y + K+ E + LK+ G+ YH + + ++EAH F++
Sbjct: 273 KKFIDNSKICSYNSTLIYVNSKKECESVYSFLKEKGLLVLMYHADLTNDQKKEAHEKFLK 332
Query: 277 DEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336
DEI+++VAT+AFGMGIDKPD+R +IHYG ++LE+Y Q+ GR GRD + L++ ++
Sbjct: 333 DEIQIIVATVAFGMGIDKPDIRRIIHYGFARSLEAYVQQVGRAGRDNSDAEAILFFHIND 392
Query: 337 FAK-GDFYCGESQTEN------QRTA-IMESLLAAQRYCLLTTCRR 374
+K + E+ N QR I+ A Y T CRR
Sbjct: 393 ESKIKNIILRENTANNLIETNFQRVEHIVHIFTQASDYAYSTACRR 438
Score = 422 (153.6 bits), Expect = 3.7e-38, P = 3.7e-38
Identities = 89/212 (41%), Positives = 136/212 (64%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT---GKTAL 57
M T KK+FGY + +Q + + K+D +VMATG GKSLCYQ+P L+ K +
Sbjct: 39 MEITQKKHFGYKNLKDFQVEAVHATFHKKDSFIVMATGMGKSLCYQIPSLMDVCRKKFTI 98
Query: 58 VVSPLISLMQDQVMSLKQRGINAEFLGSAQ--TDSSVQTKAETGYFQLLFMTPEKACIIP 115
V+SPLISLM+DQV +L ++ I++ FLGS Q ++ + + + G +++++ +PE A
Sbjct: 99 VISPLISLMKDQVDNLNRKRISSVFLGSGQKMNNNKILNEIKHGIYKIVYCSPEYALNNK 158
Query: 116 ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
F LLK + L A+DE HC+SEWGHDFR Y++L++LR L +P + LTAT T+ V
Sbjct: 159 DVFI--LLKNRILLIAIDEVHCMSEWGHDFRPSYRKLNELRIILKEIPIMCLTATCTKNV 216
Query: 176 RIDIINSLK--LKNPYVTIASFDRKNLFYGVK 205
+ DI+ +L L+N + +S ++KNLFY V+
Sbjct: 217 QSDILKNLNFDLQNCLIKRSSVNKKNLFYSVR 248
>UNIPROTKB|Q8ILG5 [details] [associations]
symbol:PF14_0278 "ATP-dependent DNA helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR010997 InterPro:IPR011545
InterPro:IPR018982 Pfam:PF00270 Pfam:PF00271 Pfam:PF09382
PROSITE:PS51194 SMART:SM00490 SMART:SM00956 GO:GO:0005524
GO:GO:0006260 GO:GO:0006281 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 EMBL:AE014187 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
SUPFAM:SSF47819 TIGRFAMs:TIGR00614 KO:K01509 HSSP:P15043
RefSeq:XP_001348452.1 ProteinModelPortal:Q8ILG5
EnsemblProtists:PF14_0278:mRNA GeneID:811860 KEGG:pfa:PF14_0278
EuPathDB:PlasmoDB:PF3D7_1429900 ProtClustDB:CLSZ2501048
Uniprot:Q8ILG5
Length = 1440
Score = 530 (191.6 bits), Expect = 1.1e-49, P = 1.1e-49
Identities = 124/346 (35%), Positives = 201/346 (58%)
Query: 54 KTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQ--TDSSVQTKAETGYFQLLFMTPEKA 111
K +V+SPLISLM+DQV +L ++ I++ FLGS Q ++ + + + G +++++ +PE A
Sbjct: 95 KFTIVISPLISLMKDQVDNLNRKRISSVFLGSGQKMNNNKILNEIKHGIYKIVYCSPEYA 154
Query: 112 CIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATA 171
F LLK + L A+DE HC+SEWGHDFR Y++L++LR L +P + LTAT
Sbjct: 155 LNNKDVFI--LLKNRILLIAIDEVHCMSEWGHDFRPSYRKLNELRIILKEIPIMCLTATC 212
Query: 172 TEKVRIDIINSLK--LKNPYVTIASFDRKNLFYGVK----VINRGQSFVD----ELVQEI 221
T+ V+ DI+ +L L+N + +S ++KNLFY V+ + + + +D E ++
Sbjct: 213 TKNVQSDILKNLNFDLQNCLIKRSSVNKKNLFYSVREKTDIYHDLKDILDIPLKESIERT 272
Query: 222 LK-----SVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIR 276
K + S ++Y + K+ E + LK+ G+ YH + + ++EAH F++
Sbjct: 273 KKFIDNSKICSYNSTLIYVNSKKECESVYSFLKEKGLLVLMYHADLTNDQKKEAHEKFLK 332
Query: 277 DEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336
DEI+++VAT+AFGMGIDKPD+R +IHYG ++LE+Y Q+ GR GRD + L++ ++
Sbjct: 333 DEIQIIVATVAFGMGIDKPDIRRIIHYGFARSLEAYVQQVGRAGRDNSDAEAILFFHIND 392
Query: 337 FAK-GDFYCGESQTEN------QRTA-IMESLLAAQRYCLLTTCRR 374
+K + E+ N QR I+ A Y T CRR
Sbjct: 393 ESKIKNIILRENTANNLIETNFQRVEHIVHIFTQASDYAYSTACRR 438
Score = 422 (153.6 bits), Expect = 3.7e-38, P = 3.7e-38
Identities = 89/212 (41%), Positives = 136/212 (64%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT---GKTAL 57
M T KK+FGY + +Q + + K+D +VMATG GKSLCYQ+P L+ K +
Sbjct: 39 MEITQKKHFGYKNLKDFQVEAVHATFHKKDSFIVMATGMGKSLCYQIPSLMDVCRKKFTI 98
Query: 58 VVSPLISLMQDQVMSLKQRGINAEFLGSAQ--TDSSVQTKAETGYFQLLFMTPEKACIIP 115
V+SPLISLM+DQV +L ++ I++ FLGS Q ++ + + + G +++++ +PE A
Sbjct: 99 VISPLISLMKDQVDNLNRKRISSVFLGSGQKMNNNKILNEIKHGIYKIVYCSPEYALNNK 158
Query: 116 ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
F LLK + L A+DE HC+SEWGHDFR Y++L++LR L +P + LTAT T+ V
Sbjct: 159 DVFI--LLKNRILLIAIDEVHCMSEWGHDFRPSYRKLNELRIILKEIPIMCLTATCTKNV 216
Query: 176 RIDIINSLK--LKNPYVTIASFDRKNLFYGVK 205
+ DI+ +L L+N + +S ++KNLFY V+
Sbjct: 217 QSDILKNLNFDLQNCLIKRSSVNKKNLFYSVR 248
>TAIR|locus:2029799 [details] [associations]
symbol:AT1G27880 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA;ISS] [GO:0042631 "cellular response
to water deprivation" evidence=IEP] [GO:0006260 "DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0008283 "cell proliferation" evidence=RCA] [GO:0051567 "histone
H3-K9 methylation" evidence=RCA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 EMBL:AC079280 GO:GO:0006310
GO:GO:0042631 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0008026 HSSP:P15043
HOGENOM:HOG000264957 KO:K10730 EMBL:AJ421618 EMBL:AK226619
IPI:IPI00519923 RefSeq:NP_174109.2 UniGene:At.40984
ProteinModelPortal:Q0WVW7 SMR:Q0WVW7 PaxDb:Q0WVW7 PRIDE:Q0WVW7
EnsemblPlants:AT1G27880.1 GeneID:839681 KEGG:ath:AT1G27880
KEGG:dosa:Os04t0486800-01 TAIR:At1g27880 InParanoid:Q0WVW7
OMA:THFWGRY PhylomeDB:Q0WVW7 ProtClustDB:CLSN2680265
Genevestigator:Q0WVW7 Uniprot:Q0WVW7
Length = 911
Score = 513 (185.6 bits), Expect = 2.1e-48, P = 2.1e-48
Identities = 127/347 (36%), Positives = 187/347 (53%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
+ L +GY FR Q I+ I+ ++V+ TG+GKSLCYQ+P ++ LVVS
Sbjct: 257 LTKLLNLVYGYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMILPGITLVVS 316
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQT-DSSVQT--KAETGYFQLLFMTPEKACIIPIS 117
PL+SLM DQ+ L I L S+Q + + +T K + G ++LF++PE+ ++ +
Sbjct: 317 PLVSLMIDQLKHLPSI-IKGGLLSSSQRPEEATETLRKLKEGIIKVLFVSPER--LLNVE 373
Query: 118 FWSKL-LKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTF--LLGVPFVALTATATEK 174
F S + V L VDEAHC+SEW H+FR Y +L F L +A+TATAT
Sbjct: 374 FLSMFRMSLSVSLVVVDEAHCVSEWSHNFRPSYMRLKASMLFSELKAECILAMTATATTM 433
Query: 175 VRIDIINSLKLKNPYVTIASFDRKNLFYGVKV--INRGQSFVDELVQEILKSVAGAGSII 232
+++SL++ + + S R N V + NR + + + K + SII
Sbjct: 434 TLQAVMSSLEIPSTNLIQKSQLRDNFELSVSLSGANRMKDLLILMESPPYKEIR---SII 490
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
VYC + + ISK L+ + A YH + +K R F ++IRV+VAT+AFGMG+
Sbjct: 491 VYCKFQYETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRVVVATVAFGMGL 550
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAK 339
DK DV VIH+ P ++E Y QE GR GRDG S C L+Y + K
Sbjct: 551 DKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGRLSYCHLFYDNDTYLK 597
>UNIPROTKB|Q6P4G0 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0006310
EMBL:CH471099 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
TIGRFAMs:TIGR00614 GO:GO:0008026 EMBL:AC087749 HOGENOM:HOG000044388
IPI:IPI01015246 UniGene:Hs.632229 HGNC:HGNC:9950 HOVERGEN:HBG057065
ChiTaRS:RECQL5 InterPro:IPR010716 Pfam:PF06959 ProDom:PD120154
EMBL:BC063440 IPI:IPI00185769 ProteinModelPortal:Q6P4G0
STRING:Q6P4G0 PRIDE:Q6P4G0 Ensembl:ENST00000423245 UCSC:uc010dgk.3
ArrayExpress:Q6P4G0 Bgee:Q6P4G0 Uniprot:Q6P4G0
Length = 964
Score = 459 (166.6 bits), Expect = 4.2e-45, Sum P(2) = 4.2e-45
Identities = 118/303 (38%), Positives = 177/303 (58%)
Query: 50 LVTGKTALVVSPLISLMQDQV---MSLKQR--GINAEFLGSAQTDSSVQTKAETGYFQLL 104
+V G T +VVSPLI+L+QDQV ++LK R +N++ + + + E ++L
Sbjct: 41 VVKGIT-IVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKIL 99
Query: 105 FMTPEKACIIPIS-FWSKLLKAGVCLF-AVDEAHCISEWGHDFRLEYKQLDKLRTFLLGV 162
++TPE A + L+ + + VDEAHC+S+WGHDFR +Y +L LR+ L
Sbjct: 100 YITPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHA 159
Query: 163 PFVALTATATEKVRIDIINSLKLKNPYVTIAS-FDRKNLFYGVK---VINR--G--QSF- 213
P VALTATAT +V+ D+ +L LK P + R NLFY V+ +I+ G + F
Sbjct: 160 PCVALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFC 219
Query: 214 VDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRL 273
+ L QE K ++G G IVYC T + E+++ L GV A YH + + R
Sbjct: 220 LKALGQEADKGLSGCG--IVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQND 277
Query: 274 FIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYA 333
++ +++ V+VAT++FGMG+DK +VR V H+ K++ YYQESGR GRDG S C LYY+
Sbjct: 278 WMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYS 337
Query: 334 RSN 336
R++
Sbjct: 338 RND 340
Score = 51 (23.0 bits), Expect = 4.2e-45, Sum P(2) = 4.2e-45
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 3 STLKKYFGYSVFR-PYQKDVIQRIIE 27
STLKK FG+ F+ P Q+ +++
Sbjct: 18 STLKKVFGFDSFKTPLQESATMAVVK 43
>FB|FBgn0040290 [details] [associations]
symbol:RecQ4 "RecQ4" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISS;IDA] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS;IMP]
[GO:0006302 "double-strand break repair" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0045740 "positive
regulation of DNA replication" evidence=IMP] [GO:0010971 "positive
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006284 "base-excision repair" evidence=IMP] [GO:0051301 "cell
division" evidence=IMP] [GO:0002164 "larval development"
evidence=IMP] [GO:0007307 "eggshell chorion gene amplification"
evidence=IMP] [GO:0036292 "DNA rewinding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] [GO:0007095
"mitotic G2 DNA damage checkpoint" evidence=IGI;IMP]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0007095 EMBL:AE014296 GO:GO:0051301 GO:GO:0010971
GO:GO:0006284 GO:GO:0008284 GO:GO:0006260 GO:GO:0008270
GO:GO:0006310 GO:GO:0003697 GO:GO:0006302 GO:GO:0045740
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0007307
GO:GO:0002164 HSSP:P15043 KO:K10730 InterPro:IPR021110 Pfam:PF11719
GO:GO:0036292 FlyBase:FBgn0040290 RefSeq:NP_652607.1
UniGene:Dm.1556 ProteinModelPortal:Q9VSE6 SMR:Q9VSE6 IntAct:Q9VSE6
PRIDE:Q9VSE6 EnsemblMetazoa:FBtr0076729 GeneID:53438
KEGG:dme:Dmel_CG7487 UCSC:CG7487-RA CTD:53438 InParanoid:Q9VSE6
OMA:GMPASRR PhylomeDB:Q9VSE6 GenomeRNAi:53438 NextBio:841159
ArrayExpress:Q9VSE6 Bgee:Q9VSE6 Uniprot:Q9VSE6
Length = 1579
Score = 284 (105.0 bits), Expect = 3.1e-44, Sum P(2) = 3.1e-44
Identities = 91/252 (36%), Positives = 124/252 (49%)
Query: 9 FGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV----TGKTALVVSPLIS 64
FG++ FR Q I R + LV ++TGSGKSLCYQLP + G LV+SPL+S
Sbjct: 866 FGHTNFRKGQDRAIMRTLSGLSSLVTLSTGSGKSLCYQLPAYLYSRKVGAITLVISPLVS 925
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSS---VQTKAETGYFQLLFMTPEKACI--IPISFW 119
LM+DQV + + A L + QT +Q G +L ++PE F
Sbjct: 926 LMEDQVTGVPHF-LRAHCLHTNQTAPQRMKIQQMIANGEIDILLVSPEAVVAGERATGFG 984
Query: 120 SKLLKAGVCLFA-VDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFV-ALTATATEKVRI 177
+ L + FA +DEAHC+S+W H+FR Y + K+ LGV V LTATAT R+
Sbjct: 985 AILRQLPPIAFACIDEAHCVSQWSHNFRPSYLMICKVLRKNLGVRTVLGLTATATLPTRV 1044
Query: 178 DIINSLKLKNPYVTIASFD---RKNLFYGV-KVINRGQSFVDELVQEILKSVAGAGSIIV 233
IIN L + + I S D NL V K NR + + L E + SII+
Sbjct: 1045 SIINHLGISDGERGIIS-DIPLPDNLVLSVSKDENRDAALLQLLNSERFEPCQ---SIII 1100
Query: 234 YCMTIKDVEEIS 245
YC + E I+
Sbjct: 1101 YCTRRDECERIA 1112
Score = 228 (85.3 bits), Expect = 3.1e-44, Sum P(2) = 3.1e-44
Identities = 42/90 (46%), Positives = 61/90 (67%)
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
++ +K K++ +A YH M + R + F+ +E+R++VAT+AFGMGI+KPD+R VI
Sbjct: 1127 QDQTKKRKRVNWQAEPYHAGMPASRRRTVQKAFMSNELRIVVATIAFGMGINKPDIRAVI 1186
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLY 331
HY P+ ESY QE GR GRDG+ S C L+
Sbjct: 1187 HYNMPRNFESYVQEIGRAGRDGLPSHCHLF 1216
>ASPGD|ASPL0000072255 [details] [associations]
symbol:recQ species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676
GO:GO:0006310 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 TIGRFAMs:TIGR00614 GO:GO:0008026
HOGENOM:HOG000044388 ProteinModelPortal:C8V8Q7
EnsemblFungi:CADANIAT00006022 OMA:ARPNIHY Uniprot:C8V8Q7
Length = 541
Score = 308 (113.5 bits), Expect = 2.6e-42, Sum P(2) = 2.6e-42
Identities = 83/206 (40%), Positives = 112/206 (54%)
Query: 12 SVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVM 71
SV P Q+DVI +E D + +T GKSLCYQLP + T +VV PL+SLM DQV
Sbjct: 4 SVKMPLQRDVIAAAVEGHDVFLQASTSFGKSLCYQLPAMTTHGVTVVVCPLLSLMTDQVN 63
Query: 72 SLKQRGINAEFLGSAQTDSSVQTKAE---TGY--FQLLFMTPEKAC---IIPISFWSKLL 123
+L+ G+ + S + + + E +G+ +LL++TPE C + +
Sbjct: 64 ALQALGVPVATINSTVSLAERRVILEDLLSGHPRIRLLYVTPE-LCQNNTFRRNLQTMHK 122
Query: 124 KAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLG--VPFVALTATATEKVRIDIIN 181
+ + A+DEAHCISEWGHDFR YK L R L VP ALTATAT +VR DIIN
Sbjct: 123 QRELVRIAIDEAHCISEWGHDFRPAYKALSWFRHSLTNPPVPISALTATATSQVRTDIIN 182
Query: 182 SLKLKNPYVTIASFD--RKNLFYGVK 205
L L + I S R N+ Y ++
Sbjct: 183 ILGLNPRRLKIFSTPSARPNIHYEIR 208
Score = 167 (63.8 bits), Expect = 2.6e-42, Sum P(2) = 2.6e-42
Identities = 30/53 (56%), Positives = 40/53 (75%)
Query: 281 VMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYA 333
++VAT AFGMGID P+VR V+H+ P+T E + QESGR GRDG A+ +YY+
Sbjct: 322 IIVATTAFGMGIDNPEVRFVVHWSPPRTFEGFVQESGRAGRDGRAAASIVYYS 374
Score = 39 (18.8 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 212 SFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAR 267
SF L + L ++ G +V C + + + AL+ LGV T + + R
Sbjct: 30 SFGKSLCYQ-LPAMTTHGVTVVVCPLLSLMTDQVNALQALGVPVATINSTVSLAER 84
>UNIPROTKB|Q33DM4 [details] [associations]
symbol:recql4 "RecQ4 protein" species:8355 "Xenopus laevis"
[GO:0000785 "chromatin" evidence=IDA] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006260 "DNA replication"
evidence=IMP] [GO:0035563 "positive regulation of chromatin
binding" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0006260
GO:GO:0008270 GO:GO:0000785 GO:GO:0003682 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0035563 CTD:9401
HOVERGEN:HBG065925 KO:K10730 InterPro:IPR021110 Pfam:PF11719
EMBL:AB213025 RefSeq:NP_001089182.1 UniGene:Xl.51337
ProteinModelPortal:Q33DM4 GeneID:734225 KEGG:xla:734225
Xenbase:XB-GENE-997817 Uniprot:Q33DM4
Length = 1503
Score = 286 (105.7 bits), Expect = 3.4e-42, Sum P(2) = 3.4e-42
Identities = 96/280 (34%), Positives = 142/280 (50%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTA----LVVSPLISL 65
GY FR Q+ + RI+ LV+++TG GKSLCYQLP + K + LV+SPL+SL
Sbjct: 726 GYRSFRSGQEQAVMRILSGLSSLVILSTGMGKSLCYQLPAYMYAKRSRCISLVISPLVSL 785
Query: 66 MQDQVMSLKQRGINAEFLGS----AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
M DQV L + + A + S Q +++++ K + G +L ++PE S S
Sbjct: 786 MDDQVSGLPPK-LKAVCIHSNMTRTQREAAIE-KVKQGKVHVLLLSPEALVGGGFSGSSC 843
Query: 122 LLKAG----VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVP-FVALTATATEKVR 176
L A V +DEAHC+SEW H+FR Y +L K+ LGV + LTATAT
Sbjct: 844 LPPADQLPPVAFACIDEAHCVSEWSHNFRPCYLRLCKVLRERLGVNCLLGLTATATRATA 903
Query: 177 IDIINSLKLKNPY----VTIASFDRKNLFYGVKVI-NRGQSFVDELVQEILKSVAGAGSI 231
D+ + L + +P V +AS NL V + NR Q+ V L E + S+
Sbjct: 904 EDVAHHLGV-SPEGGIPVRMASVP-PNLHLSVSMDRNRDQALVTLLKGERFGCL---DSV 958
Query: 232 IVYCMTIKDVEEISKALKQL--GVKAGTYHGQMGSKAREE 269
IVYC ++ + IS L+ GV + + S+ +E+
Sbjct: 959 IVYCTRREETQRISALLRTSLQGVTVSA-NSHLNSQEQED 997
Score = 206 (77.6 bits), Expect = 3.4e-42, Sum P(2) = 3.4e-42
Identities = 41/93 (44%), Positives = 56/93 (60%)
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K + + K + L A +YH M + R F+ ++R++VAT+AFGMG+DK DVR
Sbjct: 1004 KKAQALKKIRRPLKWIAESYHAGMSAAERRRVQNNFMCGQLRLVVATVAFGMGLDKSDVR 1063
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLY 331
+IHY PK ESY QE GR GRDG + C L+
Sbjct: 1064 GIIHYNMPKNFESYVQEIGRAGRDGKDAQCHLF 1096
>UNIPROTKB|Q4JNX8 [details] [associations]
symbol:RTS "RECQL4-helicase-like protein" species:8355
"Xenopus laevis" [GO:0000785 "chromatin" evidence=IDA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0006270 "DNA replication
initiation" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0000785
GO:GO:0003682 GO:GO:0003676 GO:GO:0006270 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HOVERGEN:HBG065925 KO:K10730 InterPro:IPR021110
Pfam:PF11719 EMBL:DQ059311 RefSeq:NP_001089101.1 UniGene:Xl.86701
ProteinModelPortal:Q4JNX8 GeneID:733317 KEGG:xla:733317 CTD:733317
Uniprot:Q4JNX8
Length = 1500
Score = 279 (103.3 bits), Expect = 1.9e-41, Sum P(2) = 1.9e-41
Identities = 95/280 (33%), Positives = 141/280 (50%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTA----LVVSPLISL 65
GY FR Q+ + RI+ L +++TG GKSLCYQLP + K + LV+SPL+SL
Sbjct: 723 GYRSFRSGQEQAVMRILSGFSSLGILSTGMGKSLCYQLPAYMYAKRSRCISLVISPLVSL 782
Query: 66 MQDQVMSLKQRGINAEFLGS----AQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
M DQV L + + A + S Q +++++ K + G +L ++PE S S
Sbjct: 783 MDDQVSGLSPK-LKAVCIHSNMTRTQREAAIE-KVKQGKVHVLLLSPEALVGGGFSGSSC 840
Query: 122 LLKAG----VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVP-FVALTATATEKVR 176
L A V +DEAHC+SEW H+FR Y +L K+ LGV + LTATAT
Sbjct: 841 LPPADQLPPVAFACIDEAHCVSEWSHNFRPCYLRLCKVLRERLGVNCLLGLTATATRATA 900
Query: 177 IDIINSLKLKNPY----VTIASFDRKNLFYGVKVI-NRGQSFVDELVQEILKSVAGAGSI 231
D+ + L + +P V +AS NL V + NR Q+ V L E + S+
Sbjct: 901 EDVAHHLGV-SPEGGIPVRMASVP-PNLHLSVSMDRNRDQALVTLLKGERFGCL---DSV 955
Query: 232 IVYCMTIKDVEEISKALKQL--GVKAGTYHGQMGSKAREE 269
IVYC ++ + IS L+ GV + + S+ +E+
Sbjct: 956 IVYCTRREETQRISALLRTSLQGVTVSA-NSHLNSQEQED 994
Score = 206 (77.6 bits), Expect = 1.9e-41, Sum P(2) = 1.9e-41
Identities = 41/93 (44%), Positives = 56/93 (60%)
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K + + K + L A +YH M + R F+ ++R++VAT+AFGMG+DK DVR
Sbjct: 1001 KKAQALKKIRRPLKWIAESYHAGMSAAERRRVQNNFMCGQLRLVVATVAFGMGLDKSDVR 1060
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLY 331
+IHY PK ESY QE GR GRDG + C L+
Sbjct: 1061 GIIHYNMPKNFESYVQEIGRAGRDGKDAQCHLF 1093
>WB|WBGene00004322 [details] [associations]
symbol:rcq-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0008340 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006974 GO:GO:0006310 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
EMBL:Z38112 HSSP:P15043 KO:K10902 PIR:T20430 RefSeq:NP_497810.1
ProteinModelPortal:Q19046 SMR:Q19046 PaxDb:Q19046
EnsemblMetazoa:E03A3.2 GeneID:175522 KEGG:cel:CELE_E03A3.2
UCSC:E03A3.2 CTD:175522 WormBase:E03A3.2 HOGENOM:HOG000021815
InParanoid:Q19046 OMA:AWAEIFN NextBio:888512 Uniprot:Q19046
Length = 809
Score = 416 (151.5 bits), Expect = 4.5e-38, P = 4.5e-38
Identities = 94/219 (42%), Positives = 125/219 (57%)
Query: 132 VDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVT 191
VDEAHC+++WGHDFR +Y L LR GVP+VALTATA K + DI LKL+NP
Sbjct: 305 VDEAHCVTQWGHDFRPDYLTLGSLRDVCPGVPWVALTATANAKAQDDIAFQLKLRNPESF 364
Query: 192 IASFDRKNLFYG---VKVINRGQSFVD-----------ELVQEILKSVAGAGSIIVYCMT 237
+ R NLFY I + + VD E + GS IVYC +
Sbjct: 365 KSGTYRDNLFYDNHMASFITKCLT-VDAKTSSSNLTKHEKAERSQNKKTFTGSAIVYCRS 423
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
+ +++K L+ G+ A YH +G K R E ++ +EI V+ AT+AFGMGIDKPDV
Sbjct: 424 RNECGQVAKMLEIAGIPAMAYHAGLGKKDRNEVQEKWMNNEIPVVAATVAFGMGIDKPDV 483
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336
R VIH+ + L YYQE+GR GRDG S C +YY++ +
Sbjct: 484 RAVIHWSPSQNLAGYYQEAGRAGRDGKRSYCRIYYSKQD 522
Score = 338 (124.0 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
Identities = 82/193 (42%), Positives = 112/193 (58%)
Query: 18 QKDVIQRIIEKR-DCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQR 76
Q I I++++ D V + TG+GKSLCYQLP +V G +V+SPLI+LM+DQ+ SLK++
Sbjct: 183 QMQAINCILKRKCDVYVSLPTGAGKSLCYQLPAVVHGGITVVISPLIALMKDQISSLKRK 242
Query: 77 GINAEFLGSAQTD---SSV--QTKAETGYFQLLFMTPEKACIIPIS-FWSKLLKAGVCLF 130
GI E L S T S + + E ++L++T E + L V +
Sbjct: 243 GIPCETLNSTLTTVERSRIMGELAKEKPTIRMLYLTAEGVATDGTKKLLNGLANRDVLRY 302
Query: 131 -AVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPY 189
VDEAHC+++WGHDFR +Y L LR GVP+VALTATA K + DI LKL+NP
Sbjct: 303 IVVDEAHCVTQWGHDFRPDYLTLGSLRDVCPGVPWVALTATANAKAQDDIAFQLKLRNPE 362
Query: 190 VTIASFDRKNLFY 202
+ R NLFY
Sbjct: 363 SFKSGTYRDNLFY 375
Score = 42 (19.8 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
Identities = 13/26 (50%), Positives = 13/26 (50%)
Query: 301 IHYGCPKTLESYYQESGRCGRDGIAS 326
I G K LE Y ES RC IAS
Sbjct: 558 IQTGLAKMLE--YCESARCRHVSIAS 581
>FB|FBgn0027375 [details] [associations]
symbol:RecQ5 "homolog of RecQ" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=IDA] [GO:0003924
"GTPase activity" evidence=IDA] [GO:0005525 "GTP binding"
evidence=IDA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IDA;IMP] [GO:0045930 "negative regulation of
mitotic cell cycle" evidence=IMP] [GO:0010165 "response to X-ray"
evidence=IDA] [GO:0045002 "double-strand break repair via
single-strand annealing" evidence=IMP] [GO:0090007 "regulation of
mitotic anaphase" evidence=IDA] InterPro:IPR001650
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005525 GO:GO:0005524
GO:GO:0005634 GO:GO:0003924 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003676 GO:GO:0006310 GO:GO:0010165 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045002 GO:GO:0045930
TIGRFAMs:TIGR00614 GO:GO:0090007 GO:GO:0017116 HSSP:P15043
FlyBase:FBgn0027375 EMBL:AB031086 ProteinModelPortal:Q9U5E0
PRIDE:Q9U5E0 InParanoid:Q9U5E0 ArrayExpress:Q9U5E0 Bgee:Q9U5E0
Uniprot:Q9U5E0
Length = 1058
Score = 413 (150.4 bits), Expect = 1.9e-37, P = 1.9e-37
Identities = 115/340 (33%), Positives = 168/340 (49%)
Query: 62 LISLMQDQVMSLK--QRGINAEFLGSAQTDSSVQT-KAETGYFQLLFMTPEKACIIPIS- 117
LI D + LK +N++ + + + D + KA + L++TPE+A
Sbjct: 74 LIKDQIDHLTKLKVPADSLNSK-MSTKERDRVIMDLKAVRTNLKFLYITPEQAATKFFQD 132
Query: 118 FWSKLLKAG-VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
L K + FAVDEAHC+S+WGHDFR +Y +L +LR+ V ++ALTATA+ +V+
Sbjct: 133 LLQTLHKHNKLAYFAVDEAHCVSQWGHDFRPDYLKLGELRSKYSDVIWLALTATASREVK 192
Query: 177 IDIINSLKLKNPYVTIA--SFDRKNLFYGVKVINRGQSFVDELV-------------QEI 221
DI L+L P + SF RKNLFY + N + L ++
Sbjct: 193 EDIYKQLRLHQPVAQFSTPSF-RKNLFYDIVYKNSIEDDFQHLADFARHCLGNPKEFKDT 251
Query: 222 LKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRV 281
K G G IVYC T VE ++ + + G+ A YH + + R E ++R + +
Sbjct: 252 PKPQRGCG--IVYCRTRDQVERMAIGVTKQGIGAVAYHAGLKTGERTEVQEAWMRGDQPI 309
Query: 282 MVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD 341
+ AT +FGMG+DKP VR VIH+ P+ + +YYQESGR GRDG+ S C LYY R +
Sbjct: 310 ICATNSFGMGVDKPSVRFVIHWDVPQNVAAYYQESGRAGRDGLQSYCRLYYGREDVRSIR 369
Query: 342 FYC--------GESQTENQRTAIMESLLAAQRYCLLTTCR 373
F G E ++ +C TTCR
Sbjct: 370 FLLQNDAHRARGRGDKELLTERAIKQFEKITEFCERTTCR 409
Score = 344 (126.2 bits), Expect = 4.6e-30, P = 4.6e-30
Identities = 85/215 (39%), Positives = 130/215 (60%)
Query: 5 LKKYFGYSVFRP-YQKDVIQRIIEKR-DCLVVMATGSGKSLCYQLPPLVT-GKTALVVSP 61
LKK+FG+S F+ Q+ ++ ++K+ D V M TGSGKSLC+QLP L++ + +V SP
Sbjct: 11 LKKHFGHSKFKSDLQEKAVKCAVKKKQDVYVSMPTGSGKSLCFQLPGLMSENQITIVFSP 70
Query: 62 LISLMQDQVMSLKQRGINAEFLGSAQTDSS-----VQTKAETGYFQLLFMTPEKACIIPI 116
L++L++DQ+ L + + A+ L S + + KA + L++TPE+A
Sbjct: 71 LLALIKDQIDHLTKLKVPADSLNSKMSTKERDRVIMDLKAVRTNLKFLYITPEQAAT--- 127
Query: 117 SFWSKLLKA-----GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATA 171
F+ LL+ + FAVDEAHC+S+WGHDFR +Y +L +LR+ V ++ALTATA
Sbjct: 128 KFFQDLLQTLHKHNKLAYFAVDEAHCVSQWGHDFRPDYLKLGELRSKYSDVIWLALTATA 187
Query: 172 TEKVRIDIINSLKLKNPYVTIA--SFDRKNLFYGV 204
+ +V+ DI L+L P + SF RKNLFY +
Sbjct: 188 SREVKEDIYKQLRLHQPVAQFSTPSF-RKNLFYDI 221
>UNIPROTKB|F1RMJ3 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002464 InterPro:IPR004589
InterPro:IPR011545 InterPro:IPR012532 Pfam:PF00270 Pfam:PF08072
PROSITE:PS00690 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0006310 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 EMBL:CT757491 Ensembl:ENSSSCT00000002034
Uniprot:F1RMJ3
Length = 541
Score = 364 (133.2 bits), Expect = 2.8e-33, P = 2.8e-33
Identities = 82/198 (41%), Positives = 111/198 (56%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVS 60
M+ K FG FR Q + I + DC ++M TG GKSLCYQLP V+ +V+S
Sbjct: 344 MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSSGVTIVIS 403
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSS-----VQTKAETGYFQLLFMTPEKACIIP 115
PL SL+ DQV L I A +L +TDS +Q + +LL++TPEK C
Sbjct: 404 PLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEKVCASN 463
Query: 116 --ISFWSKLLKAGVCL-FAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATAT 172
IS L + F +DEAHC+S+WGHDFR +YK+++ LR VP +ALTATA
Sbjct: 464 RLISTLENLYNRKLLARFVIDEAHCVSQWGHDFRPDYKRMNMLRQKFPSVPVMALTATAN 523
Query: 173 EKVRIDIINSLKLKNPYV 190
+V+ DI+ LK+ P V
Sbjct: 524 PRVQKDILTQLKILRPQV 541
>UNIPROTKB|O94761 [details] [associations]
symbol:RECQL4 "ATP-dependent DNA helicase Q4" species:9606
"Homo sapiens" [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0032508
"DNA duplex unwinding" evidence=IDA] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=IMP] [GO:0000733 "DNA strand
renaturation" evidence=IDA] [GO:0000405 "bubble DNA binding"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0006260
"DNA replication" evidence=IDA] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0007275 "multicellular organismal development"
evidence=TAS] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0007275 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0006260 GO:GO:0008270 GO:GO:0006281 GO:GO:0006310
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
eggNOG:COG0514 TIGRFAMs:TIGR00614 GO:GO:0000733 GO:GO:0000405
EMBL:AB006532 EMBL:AB026546 EMBL:DQ176868 EMBL:BC011602
EMBL:BC013277 IPI:IPI00014925 RefSeq:NP_004251.3 UniGene:Hs.31442
PDB:2KMU PDBsum:2KMU ProteinModelPortal:O94761 SMR:O94761
DIP:DIP-48475N IntAct:O94761 MINT:MINT-1432307 STRING:O94761
PhosphoSite:O94761 PaxDb:O94761 PRIDE:O94761 GeneID:9401
KEGG:hsa:9401 UCSC:uc003zdj.3 CTD:9401 GeneCards:GC08M145738
HGNC:HGNC:9949 MIM:218600 MIM:266280 MIM:268400 MIM:603780
neXtProt:NX_O94761 Orphanet:1225 Orphanet:3021 Orphanet:221016
PharmGKB:PA34316 HOGENOM:HOG000264957 HOVERGEN:HBG065925
InParanoid:O94761 KO:K10730 EvolutionaryTrace:O94761
GenomeRNAi:9401 NextBio:35219 CleanEx:HS_RECQL4
Genevestigator:O94761 GermOnline:ENSG00000160957 InterPro:IPR021110
Pfam:PF11719 Uniprot:O94761
Length = 1208
Score = 357 (130.7 bits), Expect = 2.4e-31, P = 2.4e-31
Identities = 104/295 (35%), Positives = 147/295 (49%)
Query: 57 LVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACI 113
LVVSPL+SLM DQV L + A + S T SV K +L +TPE +
Sbjct: 528 LVVSPLLSLMDDQVSGLPPC-LKAACIHSGMTRKQRESVLQKIRAAQVHVLMLTPE--AL 584
Query: 114 IPISFWSKLLKAGVCLFA-VDEAHCISEWGHDFRLEYKQLDKLRTFLLGVP-FVALTATA 171
+ + FA +DEAHC+S+W H+FR Y ++ K+ +GV F+ LTATA
Sbjct: 585 VGAGGLPPAAQLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERMGVHCFLGLTATA 644
Query: 172 TEKVRIDIINSLKL-KNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGS 230
T + D+ L + + P + + NL V + + L+Q K S
Sbjct: 645 TRRTASDVAQHLAVAEEPDLHGPAPVPTNLHLSVSMDRDTDQALLTLLQG--KRFQNLDS 702
Query: 231 IIVYCMTIKDVEEISKALKQL-------G-------VKAGTYHGQMGSKAREEAHRLFIR 276
II+YC +D E I+ L+ G A YH M S+ R R F++
Sbjct: 703 IIIYCNRREDTERIAALLRTCLHAAWVPGSGGRAPKTTAEAYHAGMCSRERRRVQRAFMQ 762
Query: 277 DEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLY 331
++RV+VAT+AFGMG+D+PDVR V+H G P + ESY Q GR GRDG + C L+
Sbjct: 763 GQLRVVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLF 817
Score = 290 (107.1 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 97/291 (33%), Positives = 141/291 (48%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTA----LVVSPLISL 65
G+ FRP Q+ + RI+ L+V+ TG+GKSLCYQLP L+ + + LVVSPL+SL
Sbjct: 477 GHQAFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYSRRSPCLTLVVSPLLSL 536
Query: 66 MQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEKACIIPISFWSKL 122
M DQV L + A + S T SV K +L +TPE ++
Sbjct: 537 MDDQVSGLPPC-LKAACIHSGMTRKQRESVLQKIRAAQVHVLMLTPE--ALVGAGGLPPA 593
Query: 123 LKAGVCLFA-VDEAHCISEWGHDFRLEYKQLDKLRTFLLGVP-FVALTATATEKVRIDII 180
+ FA +DEAHC+S+W H+FR Y ++ K+ +GV F+ LTATAT + D+
Sbjct: 594 AQLPPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERMGVHCFLGLTATATRRTASDVA 653
Query: 181 NSLKL-KNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
L + + P + + NL V + + L+Q K SII+YC +
Sbjct: 654 QHLAVAEEPDLHGPAPVPTNLHLSVSMDRDTDQALLTLLQG--KRFQNLDSIIIYCNRRE 711
Query: 240 DVEEISKALKQLGVKAGTYHGQMGS--KAREEAHR--LFIRDEIRVMVATM 286
D E I+ AL + + A G G K EA+ + R+ RV A M
Sbjct: 712 DTERIA-ALLRTCLHAAWVPGSGGRAPKTTAEAYHAGMCSRERRRVQRAFM 761
>UNIPROTKB|A5D786 [details] [associations]
symbol:RECQL4 "RECQL4 protein" species:9913 "Bos taurus"
[GO:0048705 "skeletal system morphogenesis" evidence=IEA]
[GO:0045875 "negative regulation of sister chromatid cohesion"
evidence=IEA] [GO:0043473 "pigmentation" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR004589 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0008284 GO:GO:0003676 GO:GO:0006310
GO:GO:0048705 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043473 eggNOG:COG0514 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 GO:GO:0045875 CTD:9401
HOGENOM:HOG000264957 HOVERGEN:HBG065925 KO:K10730
InterPro:IPR021110 Pfam:PF11719 OrthoDB:EOG4CJVGG EMBL:DAAA02037439
EMBL:BC140466 IPI:IPI00852560 RefSeq:NP_001091506.1
UniGene:Bt.27882 STRING:A5D786 Ensembl:ENSBTAT00000056581
GeneID:515472 KEGG:bta:515472 OMA:DMPEEAI NextBio:20871839
Uniprot:A5D786
Length = 1218
Score = 349 (127.9 bits), Expect = 1.7e-30, P = 1.7e-30
Identities = 101/298 (33%), Positives = 151/298 (50%)
Query: 57 LVVSPLISLMQDQVMSLKQRGINAEFLGSAQT----DSSVQTKAETGYFQLLFMTPEKAC 112
LV+SPL SLM DQ+ L G+ + S T DS++Q KA Q+L ++PE
Sbjct: 542 LVISPLTSLMDDQLSGLPP-GLKGACIHSGMTKKQRDSALQ-KARAARVQVLMLSPE--A 597
Query: 113 IIPISFWSKLLKAGVCLFA-VDEAHCISEWGHDFRLEYKQLDKLRTFLLGVP-FVALTAT 170
++ + L + FA +DEAHC+S+W H+FR Y ++ + +GV F+ LTAT
Sbjct: 598 LVGAGASTLLSQLPPVAFACLDEAHCLSQWSHNFRPCYLRVCQTLRDQMGVHCFLGLTAT 657
Query: 171 ATEKVRIDIINSLKLKNPYVTIASFD-RKNLFYGVKVINRGQSFVDELVQEILKS--VAG 227
AT +D+ L + V NL V +R D+ + +L+S
Sbjct: 658 ATRSTALDVAWHLGVTEESVLRGPATIPDNLHLSVSS-DRDP---DQALVTLLRSDRFRA 713
Query: 228 AGSIIVYCMTIKDVEEISKALKQ--------------LGVKAGTYHGQMGSKAREEAHRL 273
GS+I+YC +D E ++ L+ L A YH + S+ R R
Sbjct: 714 LGSVIIYCHRREDTERVAALLRTCLCDAQDPGPHGRALEAVAEAYHAGLCSRERRRVQRA 773
Query: 274 FIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLY 331
F+ +R++VAT+AFGMG+D+PDVR V+H G P + E+Y Q GR GRDG + C L+
Sbjct: 774 FMEGRLRMVVATVAFGMGLDRPDVRAVLHLGLPPSFETYVQAVGRAGRDGQPAHCHLF 831
Score = 285 (105.4 bits), Expect = 1.2e-23, P = 1.2e-23
Identities = 95/293 (32%), Positives = 144/293 (49%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTA----LVVSPLISL 65
G+ F P Q+ V+ R++ L+V+ TG+GKSLCYQLP L+ + + LV+SPL SL
Sbjct: 491 GHHAFYPGQERVVMRVLSGMSTLLVLPTGAGKSLCYQLPALLYFRRSPCLTLVISPLTSL 550
Query: 66 MQDQVMSLKQRGINAEFLGSAQT----DSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
M DQ+ L G+ + S T DS++Q KA Q+L ++PE ++ +
Sbjct: 551 MDDQLSGLPP-GLKGACIHSGMTKKQRDSALQ-KARAARVQVLMLSPE--ALVGAGASTL 606
Query: 122 LLKAGVCLFA-VDEAHCISEWGHDFRLEYKQLDKLRTFLLGVP-FVALTATATEKVRIDI 179
L + FA +DEAHC+S+W H+FR Y ++ + +GV F+ LTATAT +D+
Sbjct: 607 LSQLPPVAFACLDEAHCLSQWSHNFRPCYLRVCQTLRDQMGVHCFLGLTATATRSTALDV 666
Query: 180 INSLKLKNPYVTIASFD-RKNLFYGVKVINRGQSFVDELVQEILKS--VAGAGSIIVYCM 236
L + V NL V +R D+ + +L+S GS+I+YC
Sbjct: 667 AWHLGVTEESVLRGPATIPDNLHLSVSS-DRDP---DQALVTLLRSDRFRALGSVIIYCH 722
Query: 237 TIKDVEEISKALKQLGVKAGTY--HGQMGSKAREEAHR-LFIRDEIRVMVATM 286
+D E ++ L+ A HG+ E H L R+ RV A M
Sbjct: 723 RREDTERVAALLRTCLCDAQDPGPHGRALEAVAEAYHAGLCSRERRRVQRAFM 775
>UNIPROTKB|H9KZS5 [details] [associations]
symbol:H9KZS5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0043473 "pigmentation"
evidence=IEA] [GO:0045875 "negative regulation of sister chromatid
cohesion" evidence=IEA] [GO:0048705 "skeletal system morphogenesis"
evidence=IEA] InterPro:IPR001650 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
InterPro:IPR014001 PROSITE:PS51192 GeneTree:ENSGT00550000074520
EMBL:AADN02044351 EMBL:AADN02044352 EMBL:AADN02044353
Ensembl:ENSGALT00000018179 OMA:CATREST Uniprot:H9KZS5
Length = 252
Score = 202 (76.2 bits), Expect = 1.9e-28, Sum P(3) = 1.9e-28
Identities = 38/77 (49%), Positives = 49/77 (63%)
Query: 255 AGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQ 314
A YH + + R F+R +RV+VAT+AFGMG+DK DVR V+HY P+ ESY Q
Sbjct: 172 AAAYHAGLTAAERRRVQSAFMRGRLRVVVATVAFGMGLDKADVRAVLHYNMPRNFESYVQ 231
Query: 315 ESGRCGRDGIASVCWLY 331
E GR GRDG + C L+
Sbjct: 232 EIGRAGRDGEPAWCHLF 248
Score = 90 (36.7 bits), Expect = 1.9e-28, Sum P(3) = 1.9e-28
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 130 FA-VDEAHCISEWGHDFRLEYKQLDKL 155
FA +DEAHCISEW H+FR Y +L K+
Sbjct: 1 FACIDEAHCISEWSHNFRPSYLRLCKV 27
Score = 63 (27.2 bits), Expect = 1.9e-28, Sum P(3) = 1.9e-28
Identities = 32/95 (33%), Positives = 46/95 (48%)
Query: 160 LGVP-FVALTATATEKVRIDIINSLKLKNP---YVTIASFDRKNLFYGVKVI-NRGQSFV 214
LG+ F+ALTATAT D+ L + V A+ NL V V +R ++ V
Sbjct: 55 LGIRCFLALTATATVATARDVAAHLGIPQQDGIAVQCAAVP-PNLQLSVSVEWDRDRALV 113
Query: 215 DELVQEILKSVAGAGSIIVYCMTIKDVEEISKALK 249
+ L E + VA SIIVYC +D ++ L+
Sbjct: 114 NLLRSE--RFVA-LRSIIVYCTRREDTTRVAALLR 145
>UNIPROTKB|F1RSP7 [details] [associations]
symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 InterPro:IPR021110 Pfam:PF11719
EMBL:CU468594 Ensembl:ENSSSCT00000006477 Uniprot:F1RSP7
Length = 1204
Score = 328 (120.5 bits), Expect = 2.9e-28, P = 2.9e-28
Identities = 93/270 (34%), Positives = 139/270 (51%)
Query: 83 LGSAQTDSSVQTKAETGYFQLLFMTPEK---ACIIPISFWSKLLKAGVCLFAVDEAHCIS 139
+ Q +S++Q KA + Q+L ++PE A ++F ++L V +DEAHC+S
Sbjct: 564 MSKKQRNSALQ-KARSAQVQVLMLSPEALAGAGAAGLAFLTQL--PPVAFACIDEAHCLS 620
Query: 140 EWGHDFRLEYKQLDKLRTFLLGVP-FVALTATATEKVRIDIINSLKLKNPYVTIASFD-R 197
+W H+FR Y ++ K+ +GV F+ LTATAT +D+ L + V
Sbjct: 621 QWSHNFRPCYLRVCKVLRERVGVSCFLGLTATATRSTALDVAQHLGVAEESVLRGQGTIP 680
Query: 198 KNLFYGVKVINRGQSFVDELVQEILKS--VAGAGSIIVYCMTIKDVEEISKALKQ----- 250
NL V + +R D+ + +L+S SII+YC +D E ++ L+
Sbjct: 681 ANLHLSVSM-DRDP---DQALVTLLQSDRFCALDSIIIYCNRREDTERVAALLRTCLRET 736
Query: 251 --LG-------VKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
LG A YH M S+ R R F+ +RV+VAT+AFGMG+D+PDVR V+
Sbjct: 737 WALGPGGWAPEAVAEAYHAGMCSRERWRVQRAFMEGRLRVVVATVAFGMGLDRPDVRAVL 796
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLY 331
H G P + ESY Q GR GRDG + C L+
Sbjct: 797 HLGLPPSFESYVQAVGRAGRDGQPAHCHLF 826
Score = 304 (112.1 bits), Expect = 5.7e-27, Sum P(2) = 5.7e-27
Identities = 88/255 (34%), Positives = 135/255 (52%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTA----LVVSPLISL 65
G+ F P Q+ V+ RI+ L+V+ TG GKSLCYQLP L+ + + LV+SPL+SL
Sbjct: 484 GHQAFNPGQEHVVMRILSGMSTLLVLPTGGGKSLCYQLPALLYSRRSPCLTLVISPLMSL 543
Query: 66 MQDQVMSLKQRGINAEFLGSA----QTDSSVQTKAETGYFQLLFMTPEK---ACIIPISF 118
M DQV L G+ A + S Q +S++Q KA + Q+L ++PE A ++F
Sbjct: 544 MDDQVSGLPP-GLKAACIHSGMSKKQRNSALQ-KARSAQVQVLMLSPEALAGAGAAGLAF 601
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVP-FVALTATATEKVRI 177
++L V +DEAHC+S+W H+FR Y ++ K+ +GV F+ LTATAT +
Sbjct: 602 LTQL--PPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERVGVSCFLGLTATATRSTAL 659
Query: 178 DIINSLKLKNPYVTIASFD-RKNLFYGVKVINRGQSFVDELVQEILKS--VAGAGSIIVY 234
D+ L + V NL V + +R D+ + +L+S SII+Y
Sbjct: 660 DVAQHLGVAEESVLRGQGTIPANLHLSVSM-DRDP---DQALVTLLQSDRFCALDSIIIY 715
Query: 235 CMTIKDVEEISKALK 249
C +D E ++ L+
Sbjct: 716 CNRREDTERVAALLR 730
Score = 40 (19.1 bits), Expect = 5.7e-27, Sum P(2) = 5.7e-27
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 259 HGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGR 318
HG++ ++ RE RL VA + G +++PD G K L Y E
Sbjct: 1054 HGRVQAREREALARLHHTYWAFHSVAFPSCGPCLEQPDEERS---GRLKALLRRYFEEEE 1110
Query: 319 CGRDGI 324
G +G+
Sbjct: 1111 AGPEGM 1116
>UNIPROTKB|K7GSZ9 [details] [associations]
symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
InterPro:IPR021110 Pfam:PF11719 EMBL:CU468594
Ensembl:ENSSSCT00000036186 Uniprot:K7GSZ9
Length = 1209
Score = 328 (120.5 bits), Expect = 3.0e-28, P = 3.0e-28
Identities = 93/270 (34%), Positives = 139/270 (51%)
Query: 83 LGSAQTDSSVQTKAETGYFQLLFMTPEK---ACIIPISFWSKLLKAGVCLFAVDEAHCIS 139
+ Q +S++Q KA + Q+L ++PE A ++F ++L V +DEAHC+S
Sbjct: 569 MSKKQRNSALQ-KARSAQVQVLMLSPEALAGAGAAGLAFLTQL--PPVAFACIDEAHCLS 625
Query: 140 EWGHDFRLEYKQLDKLRTFLLGVP-FVALTATATEKVRIDIINSLKLKNPYVTIASFD-R 197
+W H+FR Y ++ K+ +GV F+ LTATAT +D+ L + V
Sbjct: 626 QWSHNFRPCYLRVCKVLRERVGVSCFLGLTATATRSTALDVAQHLGVAEESVLRGQGTIP 685
Query: 198 KNLFYGVKVINRGQSFVDELVQEILKS--VAGAGSIIVYCMTIKDVEEISKALKQ----- 250
NL V + +R D+ + +L+S SII+YC +D E ++ L+
Sbjct: 686 ANLHLSVSM-DRDP---DQALVTLLQSDRFCALDSIIIYCNRREDTERVAALLRTCLRET 741
Query: 251 --LG-------VKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
LG A YH M S+ R R F+ +RV+VAT+AFGMG+D+PDVR V+
Sbjct: 742 WALGPGGWAPEAVAEAYHAGMCSRERWRVQRAFMEGRLRVVVATVAFGMGLDRPDVRAVL 801
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLY 331
H G P + ESY Q GR GRDG + C L+
Sbjct: 802 HLGLPPSFESYVQAVGRAGRDGQPAHCHLF 831
Score = 304 (112.1 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 88/255 (34%), Positives = 135/255 (52%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTA----LVVSPLISL 65
G+ F P Q+ V+ RI+ L+V+ TG GKSLCYQLP L+ + + LV+SPL+SL
Sbjct: 489 GHQAFNPGQEHVVMRILSGMSTLLVLPTGGGKSLCYQLPALLYSRRSPCLTLVISPLMSL 548
Query: 66 MQDQVMSLKQRGINAEFLGSA----QTDSSVQTKAETGYFQLLFMTPEK---ACIIPISF 118
M DQV L G+ A + S Q +S++Q KA + Q+L ++PE A ++F
Sbjct: 549 MDDQVSGLPP-GLKAACIHSGMSKKQRNSALQ-KARSAQVQVLMLSPEALAGAGAAGLAF 606
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVP-FVALTATATEKVRI 177
++L V +DEAHC+S+W H+FR Y ++ K+ +GV F+ LTATAT +
Sbjct: 607 LTQL--PPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERVGVSCFLGLTATATRSTAL 664
Query: 178 DIINSLKLKNPYVTIASFD-RKNLFYGVKVINRGQSFVDELVQEILKS--VAGAGSIIVY 234
D+ L + V NL V + +R D+ + +L+S SII+Y
Sbjct: 665 DVAQHLGVAEESVLRGQGTIPANLHLSVSM-DRDP---DQALVTLLQSDRFCALDSIIIY 720
Query: 235 CMTIKDVEEISKALK 249
C +D E ++ L+
Sbjct: 721 CNRREDTERVAALLR 735
Score = 40 (19.1 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 259 HGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGR 318
HG++ ++ RE RL VA + G +++PD G K L Y E
Sbjct: 1059 HGRVQAREREALARLHHTYWAFHSVAFPSCGPCLEQPDEERS---GRLKALLRRYFEEEE 1115
Query: 319 CGRDGI 324
G +G+
Sbjct: 1116 AGPEGM 1121
>UNIPROTKB|F1RV44 [details] [associations]
symbol:RECQL4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048705 "skeletal system morphogenesis" evidence=IEA]
[GO:0045875 "negative regulation of sister chromatid cohesion"
evidence=IEA] [GO:0043473 "pigmentation" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0046872 GO:GO:0008284 GO:GO:0008270
GO:GO:0003676 GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0048705 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043473 GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614
GO:GO:0008026 GO:GO:0045875 InterPro:IPR021110 Pfam:PF11719
OMA:DMPEEAI EMBL:CU468594 Ensembl:ENSSSCT00000006463 Uniprot:F1RV44
Length = 1227
Score = 328 (120.5 bits), Expect = 3.0e-28, P = 3.0e-28
Identities = 93/270 (34%), Positives = 139/270 (51%)
Query: 83 LGSAQTDSSVQTKAETGYFQLLFMTPEK---ACIIPISFWSKLLKAGVCLFAVDEAHCIS 139
+ Q +S++Q KA + Q+L ++PE A ++F ++L V +DEAHC+S
Sbjct: 587 MSKKQRNSALQ-KARSAQVQVLMLSPEALAGAGAAGLAFLTQL--PPVAFACIDEAHCLS 643
Query: 140 EWGHDFRLEYKQLDKLRTFLLGVP-FVALTATATEKVRIDIINSLKLKNPYVTIASFD-R 197
+W H+FR Y ++ K+ +GV F+ LTATAT +D+ L + V
Sbjct: 644 QWSHNFRPCYLRVCKVLRERVGVSCFLGLTATATRSTALDVAQHLGVAEESVLRGQGTIP 703
Query: 198 KNLFYGVKVINRGQSFVDELVQEILKS--VAGAGSIIVYCMTIKDVEEISKALKQ----- 250
NL V + +R D+ + +L+S SII+YC +D E ++ L+
Sbjct: 704 ANLHLSVSM-DRDP---DQALVTLLQSDRFCALDSIIIYCNRREDTERVAALLRTCLRET 759
Query: 251 --LG-------VKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
LG A YH M S+ R R F+ +RV+VAT+AFGMG+D+PDVR V+
Sbjct: 760 WALGPGGWAPEAVAEAYHAGMCSRERWRVQRAFMEGRLRVVVATVAFGMGLDRPDVRAVL 819
Query: 302 HYGCPKTLESYYQESGRCGRDGIASVCWLY 331
H G P + ESY Q GR GRDG + C L+
Sbjct: 820 HLGLPPSFESYVQAVGRAGRDGQPAHCHLF 849
Score = 304 (112.1 bits), Expect = 6.1e-27, Sum P(2) = 6.1e-27
Identities = 88/255 (34%), Positives = 135/255 (52%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTA----LVVSPLISL 65
G+ F P Q+ V+ RI+ L+V+ TG GKSLCYQLP L+ + + LV+SPL+SL
Sbjct: 507 GHQAFNPGQEHVVMRILSGMSTLLVLPTGGGKSLCYQLPALLYSRRSPCLTLVISPLMSL 566
Query: 66 MQDQVMSLKQRGINAEFLGSA----QTDSSVQTKAETGYFQLLFMTPEK---ACIIPISF 118
M DQV L G+ A + S Q +S++Q KA + Q+L ++PE A ++F
Sbjct: 567 MDDQVSGLPP-GLKAACIHSGMSKKQRNSALQ-KARSAQVQVLMLSPEALAGAGAAGLAF 624
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVP-FVALTATATEKVRI 177
++L V +DEAHC+S+W H+FR Y ++ K+ +GV F+ LTATAT +
Sbjct: 625 LTQL--PPVAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERVGVSCFLGLTATATRSTAL 682
Query: 178 DIINSLKLKNPYVTIASFD-RKNLFYGVKVINRGQSFVDELVQEILKS--VAGAGSIIVY 234
D+ L + V NL V + +R D+ + +L+S SII+Y
Sbjct: 683 DVAQHLGVAEESVLRGQGTIPANLHLSVSM-DRDP---DQALVTLLQSDRFCALDSIIIY 738
Query: 235 CMTIKDVEEISKALK 249
C +D E ++ L+
Sbjct: 739 CNRREDTERVAALLR 753
Score = 40 (19.1 bits), Expect = 6.1e-27, Sum P(2) = 6.1e-27
Identities = 18/66 (27%), Positives = 28/66 (42%)
Query: 259 HGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGR 318
HG++ ++ RE RL VA + G +++PD G K L Y E
Sbjct: 1077 HGRVQAREREALARLHHTYWAFHSVAFPSCGPCLEQPDEERS---GRLKALLRRYFEEEE 1133
Query: 319 CGRDGI 324
G +G+
Sbjct: 1134 AGPEGM 1139
>POMBASE|SPBCPT2R1.08c [details] [associations]
symbol:tlh2 "RecQ type DNA helicase Tlh1" species:4896
"Schizosaccharomyces pombe" [GO:0000722 "telomere maintenance via
recombination" evidence=IEP] [GO:0000781 "chromosome, telomeric
region" evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=NAS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=TAS] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 PomBase:SPBCPT2R1.08c
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043140
GO:GO:0000781 GO:GO:0000722 HOGENOM:HOG000213224 OrthoDB:EOG4XH37R
EMBL:BX784043 RefSeq:XP_001713158.1 ProteinModelPortal:Q1RKN3
EnsemblFungi:SPBCPT2R1.08c.1 GeneID:5802845 KEGG:spo:SPBCPT2R1.08c
NextBio:20892152 Uniprot:Q1RKN3
Length = 1919
Score = 314 (115.6 bits), Expect = 1.8e-26, P = 1.8e-26
Identities = 104/362 (28%), Positives = 171/362 (47%)
Query: 25 IIEKRDCLVVMATGSGKSLCYQLPPLVT------GKT----ALVVSPLISLMQDQVMSLK 74
++ + + + V+ TG GKSL + +P L+ GK LV+ P++SL QD ++ +
Sbjct: 1203 LLNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMVTLVLVPMMSLRQDMMLRVN 1262
Query: 75 QRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIP-ISFWSKLLKAG-VCLFAV 132
++G+ G+ V+ ET L +T E A + F+ L G + +
Sbjct: 1263 EKGLLV-CSGNWTAFKDVRLTLETQLPDLFILTYESALTNSGLRFFESLATLGRLARVVI 1321
Query: 133 DEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTI 192
DEAH + G +R + +L L P L+AT ++ + + N YV
Sbjct: 1322 DEAHLLLTSGA-WRTALSRASRLSG--LYAPLHLLSATFPRQLEM-VARQTFCTNFYVLR 1377
Query: 193 -ASFDRKNLFYGVKVINRGQSFVD-ELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQ 250
S R+N+FY + + + +D + + K G G I++C T KDVE I + L Q
Sbjct: 1378 ETSTARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEGDGRAIIFCRTKKDVEYIHRRLHQ 1437
Query: 251 LGVKAGT----YHGQMGSKAREEAHRLF--IRDEIRVMVATMAFGMGIDKPDVRHVIHYG 304
+ A T Y G + + R+ F + R+M+AT AFG+GI+ VR V+HYG
Sbjct: 1438 SDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYG 1497
Query: 305 CPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTE--NQRTAIMESLLA 362
P + Y QE+GR GRDG ++ L+Y + + + Y +S N T + S LA
Sbjct: 1498 LPASSMDYVQETGRAGRDGKYAIAALFYEKYD-STWSSYVEDSMKNFLNDNTMCVRSFLA 1556
Query: 363 AQ 364
++
Sbjct: 1557 SE 1558
>POMBASE|SPAC212.11 [details] [associations]
symbol:tlh1 "RecQ type DNA helicase" species:4896
"Schizosaccharomyces pombe" [GO:0000722 "telomere maintenance via
recombination" evidence=IEP] [GO:0000781 "chromosome, telomeric
region" evidence=IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=NAS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=TAS] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR004695 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF03595 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 PomBase:SPBCPT2R1.08c GO:GO:0016021 GO:GO:0005524
GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0055085 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043140 GO:GO:0000781
GO:GO:0000722 eggNOG:COG0514 EMBL:BK005597
ProteinModelPortal:Q5EAK4 TCDB:2.A.16.2.2 HOGENOM:HOG000213224
OrthoDB:EOG4XH37R NextBio:20892297 Uniprot:Q5EAK4
Length = 2100
Score = 314 (115.6 bits), Expect = 2.0e-26, P = 2.0e-26
Identities = 104/362 (28%), Positives = 171/362 (47%)
Query: 25 IIEKRDCLVVMATGSGKSLCYQLPPLVT------GKT----ALVVSPLISLMQDQVMSLK 74
++ + + + V+ TG GKSL + +P L+ GK LV+ P++SL QD ++ +
Sbjct: 1384 LLNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMVTLVLVPMMSLRQDMMLRVN 1443
Query: 75 QRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIP-ISFWSKLLKAG-VCLFAV 132
++G+ G+ V+ ET L +T E A + F+ L G + +
Sbjct: 1444 EKGLLV-CSGNWTAFKDVRLTLETQLPDLFILTYESALTNSGLRFFESLATLGRLARVVI 1502
Query: 133 DEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTI 192
DEAH + G +R + +L L P L+AT ++ + + N YV
Sbjct: 1503 DEAHLLLTSGA-WRTALSRASRLSG--LYAPLHLLSATFPRQLEM-VARQTFCTNFYVLR 1558
Query: 193 -ASFDRKNLFYGVKVINRGQSFVD-ELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQ 250
S R+N+FY + + + +D + + K G G I++C T KDVE I + L Q
Sbjct: 1559 ETSTARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEGDGRAIIFCRTKKDVEYIHRRLHQ 1618
Query: 251 LGVKAGT----YHGQMGSKAREEAHRLF--IRDEIRVMVATMAFGMGIDKPDVRHVIHYG 304
+ A T Y G + + R+ F + R+M+AT AFG+GI+ VR V+HYG
Sbjct: 1619 SDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYG 1678
Query: 305 CPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTE--NQRTAIMESLLA 362
P + Y QE+GR GRDG ++ L+Y + + + Y +S N T + S LA
Sbjct: 1679 LPASSMDYVQETGRAGRDGKYAIAALFYEKYD-STWSSYVEDSMKNFLNDNTMCVRSFLA 1737
Query: 363 AQ 364
++
Sbjct: 1738 SE 1739
>UNIPROTKB|E2RDN3 [details] [associations]
symbol:E2RDN3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00098 Pfam:PF00270 PROSITE:PS50158 SMART:SM00343
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074520 GO:GO:0008026
OMA:DMPEEAI EMBL:AAEX03008976 EMBL:AAEX03008977 EMBL:AAEX03008978
Ensembl:ENSCAFT00000002463 Uniprot:E2RDN3
Length = 1163
Score = 300 (110.7 bits), Expect = 2.7e-25, P = 2.7e-25
Identities = 87/252 (34%), Positives = 129/252 (51%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTA----LVVSPLISL 65
G+ FRP Q+ V+ R++ L+V+ TG+GKSLCYQLP L+ + + LV+SPL+SL
Sbjct: 490 GHRAFRPRQEQVVMRVLSGMSTLLVLPTGAGKSLCYQLPALLYARRSPCLTLVISPLLSL 549
Query: 66 MQDQVMSLKQ--RGINAEF-LGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKL 122
M DQV SL +G+ + Q +S++Q K QLL ++PE L
Sbjct: 550 MDDQVSSLPPCLKGVCIHSGMSQKQRESALQ-KVHAAQVQLLVLSPETLVGAGAGMPGHL 608
Query: 123 LKAGVCLFA-VDEAHCISEWGHDFRLEYKQLDKLRTFLLGVP-FVALTATATEKVRIDII 180
+ FA +DEAHCIS+W H+FR Y ++ K+ +GV F+ LTATAT D+
Sbjct: 609 PQLPPVAFACIDEAHCISQWSHNFRPCYLRVCKVLREHMGVRCFLGLTATATRSTARDVA 668
Query: 181 NSLKLKNPYVTIASFD-RKNLFYGVKVINRGQSFVDELVQEILKS--VAGAGSIIVYCMT 237
L + V NL V +R + D+ + +L+S S+IVYC
Sbjct: 669 RHLGVAEELVLRGPATVPSNLHLSV---SRDRD-PDQALVTLLQSDRFRALSSVIVYCHR 724
Query: 238 IKDVEEISKALK 249
D E ++ L+
Sbjct: 725 RGDTERVAALLR 736
>RGD|1307732 [details] [associations]
symbol:Recql4 "RecQ protein-like 4" species:10116 "Rattus
norvegicus" [GO:0000405 "bubble DNA binding" evidence=ISO]
[GO:0000733 "DNA strand renaturation" evidence=ISO] [GO:0001501
"skeletal system development" evidence=ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISO]
[GO:0005575 "cellular_component" evidence=ND] [GO:0006260 "DNA
replication" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA;ISO] [GO:0032508
"DNA duplex unwinding" evidence=ISO] [GO:0043140 "ATP-dependent
3'-5' DNA helicase activity" evidence=ISO] [GO:0043473
"pigmentation" evidence=IEA;ISO] [GO:0045875 "negative regulation
of sister chromatid cohesion" evidence=IEA;ISO] [GO:0048705
"skeletal system morphogenesis" evidence=IEA;ISO]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR004589
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
RGD:1307732 GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0006310 Gene3D:4.10.60.10 SUPFAM:SSF57756 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00550000074520
TIGRFAMs:TIGR00614 GO:GO:0008026 InterPro:IPR021110 Pfam:PF11719
IPI:IPI00366433 Ensembl:ENSRNOT00000045135 UCSC:RGD:1307732
ArrayExpress:D4A5W5 Uniprot:D4A5W5
Length = 1216
Score = 296 (109.3 bits), Expect = 7.7e-25, P = 7.7e-25
Identities = 78/222 (35%), Positives = 114/222 (51%)
Query: 127 VCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVP-FVALTATATEKVRIDIINSLKL 185
V +DE HC+S+W H+FR Y ++ K+ +GV F+ LTATAT D+ L +
Sbjct: 621 VAFACIDEVHCLSQWSHNFRPCYLRVCKVLREHMGVRCFLGLTATATRSTARDVAQHLGI 680
Query: 186 KNPYVTIASFD-RKNLFYGVKVI-NRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEE 243
S NL V + + Q+ V L + +++ SII+YC KD E
Sbjct: 681 AEELEVSGSASIPANLHLSVSMDRDSDQALVTLLQGDRFRTL---DSIIIYCARRKDTER 737
Query: 244 ISKAL----------KQLG----VKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFG 289
++ L K G A YH M S+ R+ + F++ +R++VAT+AFG
Sbjct: 738 VAALLRTCLSTVRDSKPRGRGPETLAEAYHAGMCSQERKRVQQAFMQGHLRMVVATVAFG 797
Query: 290 MGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLY 331
MG+D+PDVR V+H G P + ESY Q GR GRDG + C L+
Sbjct: 798 MGLDRPDVRAVLHLGLPPSFESYVQAIGRAGRDGKPAHCHLF 839
Score = 283 (104.7 bits), Expect = 1.9e-23, P = 1.9e-23
Identities = 86/254 (33%), Positives = 123/254 (48%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTA----LVVSPLISL 65
G+ FRP Q+ + RI+ L+V+ TG+GKSLCYQLP L+ K + LVVSPL+SL
Sbjct: 494 GHHTFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYAKRSPCLTLVVSPLLSL 553
Query: 66 MQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEK--ACII--PISF 118
M DQV L + A L S T SV K +L ++PE C P +
Sbjct: 554 MDDQVSDLPSC-LKAACLHSGMTKKQRESVLKKVRAAQVHVLIVSPEALVGCGAKGPANL 612
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVP-FVALTATATEKVRI 177
V +DE HC+S+W H+FR Y ++ K+ +GV F+ LTATAT
Sbjct: 613 PPAAQLPPVAFACIDEVHCLSQWSHNFRPCYLRVCKVLREHMGVRCFLGLTATATRSTAR 672
Query: 178 DIINSLKLKNPYVTIASFD-RKNLFYGVKVI-NRGQSFVDELVQEILKSVAGAGSIIVYC 235
D+ L + S NL V + + Q+ V L + +++ SII+YC
Sbjct: 673 DVAQHLGIAEELEVSGSASIPANLHLSVSMDRDSDQALVTLLQGDRFRTL---DSIIIYC 729
Query: 236 MTIKDVEEISKALK 249
KD E ++ L+
Sbjct: 730 ARRKDTERVAALLR 743
>MGI|MGI:1931028 [details] [associations]
symbol:Recql4 "RecQ protein-like 4" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000405 "bubble DNA binding" evidence=ISO] [GO:0000733 "DNA
strand renaturation" evidence=ISO] [GO:0001501 "skeletal system
development" evidence=IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006260
"DNA replication" evidence=ISO] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IMP] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0032508 "DNA duplex unwinding" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
[GO:0043473 "pigmentation" evidence=IMP] [GO:0045875 "negative
regulation of sister chromatid cohesion" evidence=IMP] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0048705 "skeletal system
morphogenesis" evidence=IMP] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR004589 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 MGI:MGI:1931028 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0046872 GO:GO:0008284
GO:GO:0006260 GO:GO:0008270 GO:GO:0003676 GO:GO:0006310
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0048705 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043473 eggNOG:COG0514
GeneTree:ENSGT00550000074520 TIGRFAMs:TIGR00614 GO:GO:0008026
GO:GO:0045875 CTD:9401 HOGENOM:HOG000264957 HOVERGEN:HBG065925
KO:K10730 InterPro:IPR021110 Pfam:PF11719 EMBL:AB039882
EMBL:AB175741 EMBL:AB042529 IPI:IPI00119366 IPI:IPI00462416
RefSeq:NP_478121.2 UniGene:Mm.18373 ProteinModelPortal:Q75NR7
SMR:Q75NR7 IntAct:Q75NR7 STRING:Q75NR7 PhosphoSite:Q75NR7
PRIDE:Q75NR7 DNASU:79456 Ensembl:ENSMUST00000036852 GeneID:79456
KEGG:mmu:79456 UCSC:uc007wlv.1 OrthoDB:EOG4CJVGG NextBio:349927
Bgee:Q75NR7 CleanEx:MM_RECQL4 Genevestigator:Q75NR7
GermOnline:ENSMUSG00000033762 Uniprot:Q75NR7
Length = 1216
Score = 284 (105.0 bits), Expect = 1.5e-23, P = 1.5e-23
Identities = 76/221 (34%), Positives = 116/221 (52%)
Query: 130 FA-VDEAHCISEWGHDFRLEYKQLDKLRTFLLGVP-FVALTATATEKVRIDIINSLKLKN 187
FA +DE HC+S+W H+FR Y ++ K+ +GV F+ LTATAT D+ L +
Sbjct: 623 FACIDEVHCLSQWSHNFRPCYLRVCKVLREHMGVRCFLGLTATATRSTARDVAQHLGIAG 682
Query: 188 PYVTIASFD-RKNLFYGVKVI-NRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEE-- 243
+ S + NL V + + Q+ V L + +++ S+I+YC T + ++
Sbjct: 683 EFELSGSANIPANLHLSVSMDRDSDQALVTLLQGDRFRTL---DSVIIYC-TRERIQNGW 738
Query: 244 ---ISKALKQLGVK----------AGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGM 290
+ L +G A YH M S+ R + F+R +R++VAT+AFGM
Sbjct: 739 LALLRTCLSMVGDSRPRGCGPEAIAEAYHAGMSSQERRRVQQAFMRGHLRMVVATVAFGM 798
Query: 291 GIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLY 331
G+D+PDVR V+H G P + ESY Q GR GRDG + C L+
Sbjct: 799 GLDRPDVRAVLHLGLPPSFESYVQAIGRAGRDGKPAHCHLF 839
Score = 269 (99.8 bits), Expect = 5.3e-21, P = 5.3e-21
Identities = 82/240 (34%), Positives = 118/240 (49%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTA----LVVSPLISL 65
GY FRP Q+ I RI+ L+V+ TG+GKSLCYQLP L+ + + LVVSPL+SL
Sbjct: 494 GYRAFRPGQERAIMRILSGISTLLVLPTGAGKSLCYQLPALLYAQRSPCLTLVVSPLLSL 553
Query: 66 MQDQVMSLKQRGINAEFLGSAQTDS---SVQTKAETGYFQLLFMTPEK--ACII--PISF 118
M DQV L + A L S T SV K +L ++PE C P S
Sbjct: 554 MDDQVSDLPSC-LKAACLHSGMTKKQRESVLKKVRAAQVHVLIVSPEALVGCGARGPGSL 612
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVP-FVALTATATEKVRI 177
+ +DE HC+S+W H+FR Y ++ K+ +GV F+ LTATAT
Sbjct: 613 PQAAQLPPIAFACIDEVHCLSQWSHNFRPCYLRVCKVLREHMGVRCFLGLTATATRSTAR 672
Query: 178 DIINSLKLKNPYVTIASFD-RKNLFYGVKVI-NRGQSFVDELVQEILKSVAGAGSIIVYC 235
D+ L + + S + NL V + + Q+ V L + +++ S+I+YC
Sbjct: 673 DVAQHLGIAGEFELSGSANIPANLHLSVSMDRDSDQALVTLLQGDRFRTL---DSVIIYC 729
>UNIPROTKB|Q47ZX4 [details] [associations]
symbol:CPS_2945 "Putative DEAD/DEAH box helicase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG0514 GO:GO:0008026 RefSeq:YP_269645.1
ProteinModelPortal:Q47ZX4 STRING:Q47ZX4 GeneID:3520230
KEGG:cps:CPS_2945 PATRIC:21468917 OMA:AFGVGMD
ProtClustDB:CLSK938184 BioCyc:CPSY167879:GI48-2994-MONOMER
Uniprot:Q47ZX4
Length = 843
Score = 275 (101.9 bits), Expect = 7.5e-23, P = 7.5e-23
Identities = 75/262 (28%), Positives = 138/262 (52%)
Query: 90 SSVQTKAETGYFQLLFMTPEKAC--IIPISFWSKLLKAG-VCLFAVDEAHCISEWGHDFR 146
S ++ + +++F +PE ++P+ F +L K + +DEAH I WG +FR
Sbjct: 238 SEIRDNIDNDKQKVIFTSPESVTGSLLPLLF--RLAKQNSIANIIIDEAHLIDTWGSNFR 295
Query: 147 LEYKQLDKLRTFLLGV---PF--VALTATATEKVRIDIINSLKLKN---PYVTIASFDRK 198
E+++ L L V PF + ++AT T+ I + +L ++ P V +F R
Sbjct: 296 SEFQRFGALVASLRQVSNSPFKTILMSATFTQS-NIGSLTTLYCESDNKPIVVNGNFLRP 354
Query: 199 NLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGV-KAGT 257
+ K N G++ + L + + +A +I+Y ++D ++S LK +G+ +
Sbjct: 355 EISSSYK--NEGEN--NHLQSVVGRVIALPKPLILYTTLVQDSIDLSCHLKAIGLNRIAL 410
Query: 258 YHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESG 317
++G+ ++RE+ + +D++ +++AT AFG+G+DK +V+ VIH P ++ YYQE G
Sbjct: 411 FNGKTDIRSREKIIEQWQKDDLDIIIATSAFGVGMDKSNVKSVIHACIPDNIDRYYQEIG 470
Query: 318 RCGRDGIASVCWLYYARSNFAK 339
R GRDG A+ + Y AK
Sbjct: 471 RAGRDGEAATSEVIYYNKQLAK 492
>TIGR_CMR|CPS_2945 [details] [associations]
symbol:CPS_2945 "putative DEAD/DEAH box helicase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 eggNOG:COG0514 GO:GO:0008026 RefSeq:YP_269645.1
ProteinModelPortal:Q47ZX4 STRING:Q47ZX4 GeneID:3520230
KEGG:cps:CPS_2945 PATRIC:21468917 OMA:AFGVGMD
ProtClustDB:CLSK938184 BioCyc:CPSY167879:GI48-2994-MONOMER
Uniprot:Q47ZX4
Length = 843
Score = 275 (101.9 bits), Expect = 7.5e-23, P = 7.5e-23
Identities = 75/262 (28%), Positives = 138/262 (52%)
Query: 90 SSVQTKAETGYFQLLFMTPEKAC--IIPISFWSKLLKAG-VCLFAVDEAHCISEWGHDFR 146
S ++ + +++F +PE ++P+ F +L K + +DEAH I WG +FR
Sbjct: 238 SEIRDNIDNDKQKVIFTSPESVTGSLLPLLF--RLAKQNSIANIIIDEAHLIDTWGSNFR 295
Query: 147 LEYKQLDKLRTFLLGV---PF--VALTATATEKVRIDIINSLKLKN---PYVTIASFDRK 198
E+++ L L V PF + ++AT T+ I + +L ++ P V +F R
Sbjct: 296 SEFQRFGALVASLRQVSNSPFKTILMSATFTQS-NIGSLTTLYCESDNKPIVVNGNFLRP 354
Query: 199 NLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGV-KAGT 257
+ K N G++ + L + + +A +I+Y ++D ++S LK +G+ +
Sbjct: 355 EISSSYK--NEGEN--NHLQSVVGRVIALPKPLILYTTLVQDSIDLSCHLKAIGLNRIAL 410
Query: 258 YHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESG 317
++G+ ++RE+ + +D++ +++AT AFG+G+DK +V+ VIH P ++ YYQE G
Sbjct: 411 FNGKTDIRSREKIIEQWQKDDLDIIIATSAFGVGMDKSNVKSVIHACIPDNIDRYYQEIG 470
Query: 318 RCGRDGIASVCWLYYARSNFAK 339
R GRDG A+ + Y AK
Sbjct: 471 RAGRDGEAATSEVIYYNKQLAK 492
>ASPGD|ASPL0000073665 [details] [associations]
symbol:AN5092 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:BN001303
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG0514
GO:GO:0008026 EMBL:AACD01000086 InterPro:IPR022698 Pfam:PF12013
RefSeq:XP_662696.1 ProteinModelPortal:Q5B2Y8
EnsemblFungi:CADANIAT00005288 GeneID:2872891 KEGG:ani:AN5092.2
HOGENOM:HOG000217656 OrthoDB:EOG45XC49 Uniprot:Q5B2Y8
Length = 1571
Score = 245 (91.3 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 93/312 (29%), Positives = 146/312 (46%)
Query: 32 LVVMATGSGKSLCYQLPPLVT-GKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDS 90
+ +M TGSGKS+ + LP G ++V PL+SL D +M + GI+
Sbjct: 935 VAIMPTGSGKSMLFMLPAYAAPGGCTIMVVPLLSLRADLMMRCQALGISCV--------- 985
Query: 91 SVQTKAETGYFQLLFMTPEKACIIPI-SFWSKLLKAG-VCLFAVDEAHCISEWGHDFRLE 148
S +++ ++ +TPE +F ++ + + +DE H I DF+
Sbjct: 986 SWESRRPPDEAAIVLVTPESTENPDFHTFLNRQRQMRRLDRIVIDECHVILNDQKDFQPA 1045
Query: 149 YKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTI--ASFDRKNLFYGV-- 204
+L +L + + F+ E+ R + +K + V I A R+N+ Y +
Sbjct: 1046 MARLGRLVSAQTQLVFLTAMLPPIEEARF--LRRIKHQRSEVGIHRARTSRRNVAYRMVR 1103
Query: 205 KVINRG----------QSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVK 254
+ RG Q V +Q+ ++ AG G +IVY V+ IS +LG +
Sbjct: 1104 PSLPRGVPRKPHQWLTQPNVRGFIQQRIQQ-AGDGQVIVYANIKSQVDAISC---ELGCE 1159
Query: 255 AGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQ 314
A YH + + + F + R++ AT A GMGID PD+R VIH G P+TL Y Q
Sbjct: 1160 A--YHSAVLDQTG--VMQRFQSSQTRIIAATSALGMGIDIPDIRCVIHLGRPRTLLDYSQ 1215
Query: 315 ESGRCGRDGIAS 326
ESGR GRDG+AS
Sbjct: 1216 ESGRAGRDGLAS 1227
>UNIPROTKB|F1RMJ2 [details] [associations]
symbol:BLM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043140 "ATP-dependent 3'-5' DNA helicase activity"
evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR010997
InterPro:IPR018982 Pfam:PF00271 Pfam:PF00570 Pfam:PF09382
PROSITE:PS50967 PROSITE:PS51194 SMART:SM00341 SMART:SM00490
SMART:SM00956 GO:GO:0005524 GO:GO:0006260 GO:GO:0006281
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0003676 GO:GO:0005622
GO:GO:0006310 GO:GO:0043140 GeneTree:ENSGT00550000074520
Gene3D:1.10.150.80 SUPFAM:SSF47819 TIGRFAMs:TIGR00614 EMBL:CT757491
Ensembl:ENSSSCT00000002035 OMA:REMTENT Uniprot:F1RMJ2
Length = 511
Score = 235 (87.8 bits), Expect = 2.9e-17, P = 2.9e-17
Identities = 54/135 (40%), Positives = 75/135 (55%)
Query: 244 ISKALKQLGVKAGTYHGQMGSKAREEA-HRLFIRDEIRVMVATMAFGMGIDKPDVRHVIH 302
++ L++ G+ A YH + AR+E H+ +D +V+ AT+AFGMGIDKPDVR VIH
Sbjct: 1 MADTLQKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAFGMGIDKPDVRFVIH 60
Query: 303 YGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRT--AIMESL 360
PK++E YYQESGR GRDG S C L+Y + + + N T +L
Sbjct: 61 ASLPKSVEGYYQESGRAGRDGEISQCLLFYTYHDVTRLKRLILMEKDGNHHTKETHFNNL 120
Query: 361 LAAQRYCL-LTTCRR 374
+ YC + CRR
Sbjct: 121 YSMVHYCENIAECRR 135
>UNIPROTKB|F8WD97 [details] [associations]
symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 EMBL:AC006559 HGNC:HGNC:9948 ChiTaRS:RECQL
IPI:IPI00792775 ProteinModelPortal:F8WD97 SMR:F8WD97
Ensembl:ENST00000396093 ArrayExpress:F8WD97 Bgee:F8WD97
Uniprot:F8WD97
Length = 211
Score = 209 (78.6 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 52/126 (41%), Positives = 73/126 (57%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ F FRP Q + I + ++ +VM TG GKSLCYQLP L + LV+ PLIS
Sbjct: 83 LQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLIS 142
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQ-TKAE----TGYFQLLFMTPEKACIIPISFW 119
LM+DQ+M LKQ GI+A L ++ + V+ AE +L+++TPEK + F
Sbjct: 143 LMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKM-FM 201
Query: 120 SKLLKA 125
S+L KA
Sbjct: 202 SRLEKA 207
>UNIPROTKB|F8WA66 [details] [associations]
symbol:RECQL "ATP-dependent DNA helicase Q1" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 EMBL:AC006559 HGNC:HGNC:9948 ChiTaRS:RECQL
IPI:IPI01013557 ProteinModelPortal:F8WA66 SMR:F8WA66 PRIDE:F8WA66
Ensembl:ENST00000314748 ArrayExpress:F8WA66 Bgee:F8WA66
Uniprot:F8WA66
Length = 199
Score = 203 (76.5 bits), Expect = 6.7e-16, P = 6.7e-16
Identities = 47/111 (42%), Positives = 66/111 (59%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSPLIS 64
L+ F FRP Q + I + ++ +VM TG GKSLCYQLP L + LV+ PLIS
Sbjct: 83 LQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLIS 142
Query: 65 LMQDQVMSLKQRGINAEFLGSAQTDSSVQ-TKAE----TGYFQLLFMTPEK 110
LM+DQ+M LKQ GI+A L ++ + V+ AE +L+++TPEK
Sbjct: 143 LMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEK 193
>UNIPROTKB|J3KSL7 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR002464
InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00690 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5 Ensembl:ENST00000580078
Uniprot:J3KSL7
Length = 198
Score = 194 (73.4 bits), Expect = 6.8e-15, P = 6.8e-15
Identities = 47/131 (35%), Positives = 72/131 (54%)
Query: 78 INAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPIS-FWSKLLKAGVCLF-AVDEA 135
+N++ + + + E ++L++TPE A + L+ + + VDEA
Sbjct: 4 LNSKLSAQERKELLADLEREKPQTKILYITPEMAASSSFQPTLNSLVSRHLLSYLVVDEA 63
Query: 136 HCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIAS- 194
HC+S+WGHDFR +Y +L LR+ L P VALTATAT +V+ D+ +L LK P +
Sbjct: 64 HCVSQWGHDFRPDYLRLGALRSRLGHAPCVALTATATPQVQEDVFAALHLKKPVAIFKTP 123
Query: 195 FDRKNLFYGVK 205
R NLFY V+
Sbjct: 124 CFRANLFYDVQ 134
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 203 (76.5 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 89/326 (27%), Positives = 145/326 (44%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT---GKTA--LVVSPLIS 64
G+ + P QK+ I I+E + + TG+GK+ Y LP L GK A L+V+P
Sbjct: 21 GFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRIQRGKKAQVLIVTPTRE 80
Query: 65 L-MQ--DQVMSL-KQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
L +Q D+V L K + A + Q Q + +++ TP + I+
Sbjct: 81 LALQVADEVAKLGKYLKVRALAVYGGQAIER-QIRGLRQGVEVIVGTPGR--ILDHIGRK 137
Query: 121 KLLKAGVCLFAVDEAHCISEWGH--DFRLEYKQL-DKLRTFLLGVPFVALTATATEKVRI 177
A + + +DEA + + G D L ++ +T L A T +K +
Sbjct: 138 TFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSATLPAPIKTIIKKF-L 196
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
++KL T+ + + ++Y + + ++ LV IL S +I V+C T
Sbjct: 197 GGYKTVKLVGREKTVPAI--RQVYYELPETEK----IEGLVS-ILNSELPIQAI-VFCRT 248
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K V+E+ + L G A HG M + R + + F + ++VAT G+D PDV
Sbjct: 249 KKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAARGLDIPDV 308
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDG 323
HVI++ P+ ESY GR GR G
Sbjct: 309 SHVINFDIPQNPESYIHRIGRTGRAG 334
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 203 (76.5 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 89/326 (27%), Positives = 145/326 (44%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT---GKTA--LVVSPLIS 64
G+ + P QK+ I I+E + + TG+GK+ Y LP L GK A L+V+P
Sbjct: 21 GFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQRIQRGKKAQVLIVTPTRE 80
Query: 65 L-MQ--DQVMSL-KQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWS 120
L +Q D+V L K + A + Q Q + +++ TP + I+
Sbjct: 81 LALQVADEVAKLGKYLKVRALAVYGGQAIER-QIRGLRQGVEVIVGTPGR--ILDHIGRK 137
Query: 121 KLLKAGVCLFAVDEAHCISEWGH--DFRLEYKQL-DKLRTFLLGVPFVALTATATEKVRI 177
A + + +DEA + + G D L ++ +T L A T +K +
Sbjct: 138 TFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTLLFSATLPAPIKTIIKKF-L 196
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
++KL T+ + + ++Y + + ++ LV IL S +I V+C T
Sbjct: 197 GGYKTVKLVGREKTVPAI--RQVYYELPETEK----IEGLVS-ILNSELPIQAI-VFCRT 248
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
K V+E+ + L G A HG M + R + + F + ++VAT G+D PDV
Sbjct: 249 KKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVATDVAARGLDIPDV 308
Query: 298 RHVIHYGCPKTLESYYQESGRCGRDG 323
HVI++ P+ ESY GR GR G
Sbjct: 309 SHVINFDIPQNPESYIHRIGRTGRAG 334
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 202 (76.2 bits), Expect = 2.0e-13, P = 2.0e-13
Identities = 92/355 (25%), Positives = 156/355 (43%)
Query: 7 KYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV-----------TGKT 55
K G++ P Q ++ RD + + TGSGK+L Y LP +V G
Sbjct: 115 KKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPI 174
Query: 56 ALVVSPLISLMQDQVMSLKQRGINAEF-----LGSAQTDSSVQTKAETGYFQLLFMTPEK 110
LV++P L + G +++ G V+ + G +++ TP +
Sbjct: 175 VLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRD-LQKGV-EIVIATPGR 232
Query: 111 ACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTAT 170
+ S + L + V +DEA + + G D ++ K + +R L +
Sbjct: 233 LIDMMESNNTNLRR--VTYLVLDEADRMLDMGFDPQIR-KIVSHIRP-----DRQTLYWS 284
Query: 171 ATEKVRIDIINSLKLKNPY-VTIASFDRK-N--LFYGVKVINRGQSFVDELVQEILKSVA 226
AT ++ ++ L NPY V I S D K N + V VI+ Q + ++LV+ +L+ +
Sbjct: 285 ATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKY-NKLVK-LLEDIM 342
Query: 227 GAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM 286
I+V+ T K ++I++ L+ G A + HG R+ F + +M AT
Sbjct: 343 DGSRILVFLDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATD 402
Query: 287 AFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYY--ARSNFAK 339
G+D DV++VI+Y P +LE Y GR GR G + ++ A + FAK
Sbjct: 403 VAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAK 457
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 182 (69.1 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 51/144 (35%), Positives = 72/144 (50%)
Query: 185 LKNPYV-TIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEE 243
L+NP V TI + + VI +S +Q++L + G + IV+ T K+ +
Sbjct: 533 LRNPVVVTIGTAGKTTDLISQHVIMMKESEKFFRLQKLLDEL-GEKTAIVFVNTKKNCDS 591
Query: 244 ISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHY 303
I+K L + G + T HG + RE + F V+VAT G GID PDV HVI+Y
Sbjct: 592 IAKNLDKAGYRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINY 651
Query: 304 GCPKTLESYYQESGRCGRDGIASV 327
PK +E Y GR GR G + V
Sbjct: 652 DMPKHIEMYTHRIGRTGRAGKSGV 675
Score = 66 (28.3 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL 50
GY P Q I +++RD + + TGSGK+ + LP L
Sbjct: 332 GYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPML 372
>TAIR|locus:2222617 [details] [associations]
symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
"plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
wall modification" evidence=RCA] InterPro:IPR000629
InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
OMA:YLIPGFM Uniprot:F4K6V1
Length = 712
Score = 198 (74.8 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 84/343 (24%), Positives = 150/343 (43%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV----------TGKTALVV 59
G+S P Q ++ RD + + TGSGK+L Y +P + G T LV+
Sbjct: 248 GFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVL 307
Query: 60 SPLISLM-QDQVMSLK---QRGINAEFL-GSAQTDSSVQTKAETGYFQLLFMTPEKACII 114
SP L Q QV +LK I+ L G A ++ + E G ++ TP + +
Sbjct: 308 SPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLK-EIERGV-DIVVATPGR--LN 363
Query: 115 PISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEK 174
I ++ V +DEA + + G + ++ K ++++ T + + A K
Sbjct: 364 DILEMKRISLHQVSYLVLDEADRMLDMGFEPQIR-KIVNEVPTKRQTLMYTATWPKEVRK 422
Query: 175 VRIDIINSLKLKNP-YVTIASFDR----KNLFYGVKVINRGQSFVDELVQEILKSVAGAG 229
+ D+ L NP V I + D K++ ++V+ + +++IL+S
Sbjct: 423 IAADL-----LVNPAQVNIGNVDELVANKSITQTIEVLAPMEKH--SRLEQILRSQEPGS 475
Query: 230 SIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFG 289
II++C T + +++++ L + A HG R++ F V+VAT
Sbjct: 476 KIIIFCSTKRMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAA 534
Query: 290 MGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYY 332
G+D D+R V++Y P +E Y GR GR G + + ++
Sbjct: 535 RGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFF 577
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 196 (74.1 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 85/351 (24%), Positives = 148/351 (42%)
Query: 7 KYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP--------PLVT---GKT 55
K G+ P Q+ + RD + + ATGSGK+L Y LP PL++ G
Sbjct: 138 KQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPI 197
Query: 56 ALVVSPL----ISLMQDQVMSLKQRGI-NAEFLGSAQTDSSVQTKAETGYFQLLFMTPEK 110
LV++P + + Q+ K I N G ++ G ++ TP +
Sbjct: 198 VLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIR-GV-EICIATPGR 255
Query: 111 ACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTAT 170
+ S + L + V +DEA + + G + ++ K +D++R V F A
Sbjct: 256 LLDMLDSNKTNLRR--VTYLVLDEADRMLDMGFEPQIR-KIVDQIRPDRQTVMFSATWPK 312
Query: 171 ATEKVRIDIINSLKLKNPYVTIASFD---RKNLFYGVKVINRG--QSFVDELVQEILKSV 225
+++ D +N VT+ S D N+ V+V++ ++ + + ++E+LK
Sbjct: 313 EVQRLARDYLNDYI----QVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKD- 367
Query: 226 AGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVAT 285
++++ T + ++I++ L+Q G A HG R+ F + +MVAT
Sbjct: 368 -RDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVAT 426
Query: 286 MAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336
GID + HV +Y P E Y GR GR G + Y+ N
Sbjct: 427 DVASRGIDVKGITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDN 477
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 171 (65.3 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 50/159 (31%), Positives = 81/159 (50%)
Query: 168 TATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG 227
+AT +++V+ + N L LK+P TI S ++N G K+ +E +E+L + G
Sbjct: 203 SATFSDRVK-SLANQL-LKSPK-TI-SVSKENTTSG-KIKQAVYWVTEERKRELLSELIG 257
Query: 228 AGS---IIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVA 284
+ ++V+ T + ++K LK G+KA HG AR +A F ++RV+VA
Sbjct: 258 VNNWQQVLVFAGTKESANTLAKELKLDGIKAALCHGDKTQGARNKALEQFSEGKVRVLVA 317
Query: 285 TMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
T G+D PD+ V+++ P E Y GR GR G
Sbjct: 318 TDVAARGLDIPDLAFVVNFHLPFLPEDYVHRVGRTGRAG 356
Score = 65 (27.9 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 7 KYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL 50
K GY P Q++ I I + D L TG+GK+ + LP L
Sbjct: 17 KACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLPIL 60
>FB|FBgn0037549 [details] [associations]
symbol:CG7878 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006200 GO:GO:0003723 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
HSSP:P10081 OMA:VLDITHV EMBL:AY051831 RefSeq:NP_649767.1
UniGene:Dm.1098 SMR:Q7K4L8 IntAct:Q7K4L8 EnsemblMetazoa:FBtr0113205
GeneID:40959 KEGG:dme:Dmel_CG7878 UCSC:CG7878-RA
FlyBase:FBgn0037549 InParanoid:Q7K4L8 OrthoDB:EOG47D7XG
GenomeRNAi:40959 NextBio:20818674 Uniprot:Q7K4L8
Length = 703
Score = 196 (74.1 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 82/357 (22%), Positives = 153/357 (42%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT-------- 52
M+ + K G+S P Q +++ D + + TG+GK+L + LP ++
Sbjct: 294 MLEEITK-MGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQSTPR 352
Query: 53 ----GKTALVVSPLISLMQDQVMSLKQ---RGINAEFL-GSAQTDSSVQTKAETGYFQLL 104
G LV++P L M +K+ RG+ A + G + + + E G +++
Sbjct: 353 GTRGGANVLVLAPTRELALQIEMEVKKYSFRGMKAVCVYGGGNRNMQI-SDLERGA-EII 410
Query: 105 FMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPF 164
TP + + + + + + + +DEA + + G + ++ LD +R
Sbjct: 411 ICTPGR--LNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKVMLD-IRP---DRQT 464
Query: 165 VALTATATEKVRIDIINSLKLKNPY-VTIASFDRKNLFYGVKVINRGQSFVDEL--VQEI 221
+ +AT VR + S +KNP V + S D ++I + +D+ +
Sbjct: 465 IMTSATWPPGVR-RLAQSY-MKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITSF 522
Query: 222 LKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRV 281
+K+++ II++C +++S L G HG RE+A +R+
Sbjct: 523 VKNMSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRI 582
Query: 282 MVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
+VAT G+D D+ HVI+Y P +E Y GR GR G ++ R ++A
Sbjct: 583 LVATDVASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDWA 639
>TAIR|locus:2119176 [details] [associations]
symbol:AT4G33370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0008270 EMBL:AL035678 EMBL:AL161583
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13116 HOGENOM:HOG000268792 ProtClustDB:CLSN2685494
IPI:IPI00545227 PIR:T05988 RefSeq:NP_195063.1 UniGene:At.65448
ProteinModelPortal:Q9SZB4 SMR:Q9SZB4 PaxDb:Q9SZB4 PRIDE:Q9SZB4
EnsemblPlants:AT4G33370.1 GeneID:829474 KEGG:ath:AT4G33370
GeneFarm:1022 TAIR:At4g33370 InParanoid:Q9SZB4 OMA:MEETETI
PhylomeDB:Q9SZB4 Genevestigator:Q9SZB4 GermOnline:AT4G33370
Uniprot:Q9SZB4
Length = 542
Score = 192 (72.6 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 91/342 (26%), Positives = 147/342 (42%)
Query: 16 PYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP------------PLVTGK--TALVVSP 61
P Q + ++ RD + + TGSGK+L + LP P+ G+ ALV+ P
Sbjct: 122 PIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICP 181
Query: 62 LISLMQ------DQ-VMSLKQRGINA--EFLGSAQTDSSVQTKAETGYFQLLFMTPEKAC 112
L + +Q V SL + G L D Q ++ TP +
Sbjct: 182 SRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLK 241
Query: 113 IIPISFWSKLLKAGVC-LFAVDEAHCISEWGH--DFRLEYKQLDKLRTFLLGVPFVALTA 169
I K + C L +DEA + + G D R + R LL +A
Sbjct: 242 DI---LAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLL------FSA 292
Query: 170 TATEKVRIDIINSLKLKNPYVTIASFDRKNL--FYGVKVINRGQSFVDELVQEILKSVAG 227
T K++I ++L +K V + NL V+ + + V L++ + K+
Sbjct: 293 TMPAKIQIFATSAL-VKPVTVNVGRAGAANLDVIQEVEYVKQEAKIV-YLLECLQKTTP- 349
Query: 228 AGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA 287
++++C DV++I + L GV+A HG + R+ A LF + V+VAT
Sbjct: 350 --PVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDV 407
Query: 288 FGMGIDKPDVRHVIHYGCPKTLESYYQE---SGRCGRDGIAS 326
G+D PD++HVI+Y P +E+Y +GRCG+ GIA+
Sbjct: 408 ASKGLDFPDIQHVINYDMPGEIENYVHRIGRTGRCGKTGIAT 449
>TIGR_CMR|BA_2109 [details] [associations]
symbol:BA_2109 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:MMAINTI HSSP:P10081 HOGENOM:HOG000268811
RefSeq:NP_844507.1 RefSeq:YP_018751.1 RefSeq:YP_028224.1
ProteinModelPortal:Q81RE0 DNASU:1085806
EnsemblBacteria:EBBACT00000011412 EnsemblBacteria:EBBACT00000014072
EnsemblBacteria:EBBACT00000023039 GeneID:1085806 GeneID:2818618
GeneID:2851363 KEGG:ban:BA_2109 KEGG:bar:GBAA_2109 KEGG:bat:BAS1961
ProtClustDB:CLSK886848 BioCyc:BANT260799:GJAJ-2029-MONOMER
BioCyc:BANT261594:GJ7F-2106-MONOMER Uniprot:Q81RE0
Length = 389
Score = 189 (71.6 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 79/325 (24%), Positives = 140/325 (43%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP------PLVTGKTALVVSP-- 61
G+ QK I I+E +D + TG+GK+L Y LP P V +V++P
Sbjct: 17 GFKELTEIQKQAIPTILEGQDVIAESPTGTGKTLAYLLPLLHKINPEVKQPQVVVLAPTR 76
Query: 62 -LISLMQDQVMSLKQ-RGIN-AEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
L+ + ++V I+ A +G A V+ + + +++ +P + I+ +
Sbjct: 77 ELVMQIHEEVQKFTAGTEISGASLIGGADIKRQVEKLKK--HPRVIVGSPGR--ILELIR 132
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRID 178
KL V DE I + ++ D +++ + V +AT T K D
Sbjct: 133 MKKLKMHEVKTIVFDEFDQIVKQ----KMMGAVQDVIKSTMRDRQLVFFSATMT-KAAED 187
Query: 179 IINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTI 238
L ++ V + + K+L +I + ++ V+ I+ G + +
Sbjct: 188 AARDLAVEPQLVRVTRAESKSLVEHTYIICERRE-KNDYVRRIMHM--GDVKAVAFLNDP 244
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
++EI++ LK +KA H + + RE R F ++ +++AT GID D+
Sbjct: 245 FRLDEITEKLKFRKMKAAALHAEASKQEREATMRAFRGGKLEILLATDIAARGIDIDDLT 304
Query: 299 HVIHYGCPKTLESYYQESGRCGRDG 323
HVIH P T++ Y SGR GR G
Sbjct: 305 HVIHLELPDTVDQYIHRSGRTGRMG 329
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 191 (72.3 bits), Expect = 5.3e-12, P = 5.3e-12
Identities = 80/344 (23%), Positives = 149/344 (43%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV----------TGKTALVV 59
G+S P Q ++ RD + + TGSGK+L Y +P + G T LV+
Sbjct: 177 GFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVL 236
Query: 60 SP---LISLMQDQVMSL-KQRGINAEFL-GSAQTDSSVQTKAETGYFQLLFMTPEKACII 114
SP L + +Q++ + + I+ L G A ++ E G ++ TP + +
Sbjct: 237 SPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRD-LERGA-DIVVATPGR--LN 292
Query: 115 PISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEK 174
I ++ + +DEA + + G + ++ K + ++ T + + A K
Sbjct: 293 DILEMRRISLRQISYLVLDEADRMLDMGFEPQIR-KIVKEIPTKRQTLMYTATWPKGVRK 351
Query: 175 VRIDIINSLKLKNP-YVTIASFDR----KNLFYGVKVINRGQSFVDELVQEILKSVAGAG 229
+ D+ L NP V I + D K++ ++V+ + +++IL+S
Sbjct: 352 IAADL-----LVNPAQVNIGNVDELVANKSITQHIEVVAPMEK--QRRLEQILRSQEPGS 404
Query: 230 SIIVYCMTIKDVEEISKAL-KQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAF 288
+I++C T + +++++ L +Q G A HG R+ F V+VAT
Sbjct: 405 KVIIFCSTKRMCDQLTRNLTRQFG--AAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVA 462
Query: 289 GMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYY 332
G+D D+R V++Y P +E Y GR GR G + ++
Sbjct: 463 ARGLDVKDIRAVVNYDFPNGVEDYVHRIGRTGRAGATGQAFTFF 506
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 188 (71.2 bits), Expect = 6.3e-12, P = 6.3e-12
Identities = 85/335 (25%), Positives = 149/335 (44%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP---PLVT------GKT---AL 57
GY P Q+ I ++E RD + TG+GK+ + LP L+T G+ AL
Sbjct: 20 GYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRAL 79
Query: 58 VVSP---LISLMQDQVMSL-KQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACI 113
+++P L + + + V K I + + + + K G +L TP + +
Sbjct: 80 ILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGV-DVLVATPGR--L 136
Query: 114 IPISFWSKLLKAGVCLFAVDEAHCISEWG--HDFRLEYKQLDKLRTFLLGVPFVALTATA 171
+ + + + V + +DEA + + G HD R +L R LL +AT
Sbjct: 137 LDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQNLL------FSATF 190
Query: 172 TEKVRIDIINSLKLKNPY-VTIASFDRKNLFYGVKVINRGQSFVDEL-VQEILKSVAGAG 229
++ ++ + L L NP + +A R+N + + FVD+ +E+L + G G
Sbjct: 191 SDDIKA-LAEKL-LHNPLEIEVA---RRNT--ASDQVTQHVHFVDKKRKRELLSHMIGKG 243
Query: 230 S---IIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM 286
+ ++V+ T +++ L + G+++ HG AR A F +IRV+VAT
Sbjct: 244 NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATD 303
Query: 287 AFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGR 321
G+D ++ HV++Y P E Y GR GR
Sbjct: 304 IAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGR 338
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 187 (70.9 bits), Expect = 7.3e-12, P = 7.3e-12
Identities = 84/347 (24%), Positives = 154/347 (44%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP--------PLVTGKT---ALV 58
GY P Q+ I I +D L TG+GK+ + LP P T K+ L+
Sbjct: 20 GYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMVENPSETLKSNTRVLI 79
Query: 59 VSPLISLMQDQVMSLK--QRGINAEFL---GSAQTDSSVQTKAETGYFQLLFMTPEKACI 113
++P L +++ + +N L G + ++ Q K + G ++ TP + +
Sbjct: 80 LTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQ-KLKRGA-DIIVATPGR--L 135
Query: 114 IPISFWSKLLKAGVCLFAVDEAHCISEWGH--DFRLEYKQLDKLRTFLLGVPFVALTATA 171
+ L + V +DEA + + G D + + ++K R LL F A ++A
Sbjct: 136 LEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQNLL---FSATFSSA 192
Query: 172 TEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDEL-VQEILKSVAGAGS 230
+K + N + +K P V A D++N +++ V++ +E+L + G +
Sbjct: 193 VKK----LANEMMIK-PQVISA--DKQNTT--ADTVSQVVYPVEQRRKRELLSELIGKKN 243
Query: 231 ---IIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA 287
++V+ T + + K L G+ + HG+ +R A R F+ ++RV+VAT
Sbjct: 244 WQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLVATEV 303
Query: 288 FGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYAR 334
G+D P + +V+++ P E Y GR GR G + V + +R
Sbjct: 304 AARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSR 350
>DICTYBASE|DDB_G0269192 [details] [associations]
symbol:tifA "eukaryotic translation initiation factor
4A" species:44689 "Dictyostelium discoideum" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0269192 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
KO:K13025 OMA:LALGDFM RefSeq:XP_646270.1 ProteinModelPortal:Q55D61
SMR:Q55D61 PRIDE:Q55D61 EnsemblProtists:DDB0191511 GeneID:8617226
KEGG:ddi:DDB_G0269192 Uniprot:Q55D61
Length = 405
Score = 186 (70.5 bits), Expect = 7.9e-12, P = 7.9e-12
Identities = 87/340 (25%), Positives = 146/340 (42%)
Query: 5 LKKYFGYSVFRP--YQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL------VTGKTA 56
L+ F Y +P Q+ I II+ RD + +G+GK+ + + L V
Sbjct: 44 LRGIFNYGFEKPSAIQQRAILPIIKGRDTIAQAQSGTGKTATFSIGALQCVEVNVRSPQV 103
Query: 57 LVVSPLISLMQD-QVMSLK-QRGINAEF---LGSAQTDSSVQTKAETGYFQLLFMTPEKA 111
L++SP L Q Q ++L +N + +G V+ K ETG ++ TP +
Sbjct: 104 LILSPTRELAQQIQKVALALSEFMNIQVHACVGGKNLSDDVK-KLETGV-HIVSGTPGR- 160
Query: 112 CIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATA 171
++ + L + + +DEA + G ++ D R G V ++AT
Sbjct: 161 -VLDMITRKSLPTRHIKMMILDEADEMLSLGFQQQIN----DVYRYLPNGTQIVLVSATL 215
Query: 172 TEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVK---VINRGQSFVDELVQEILKSVAGA 228
T+ V + + K P + D L G+K V + + + +I S+
Sbjct: 216 TQDV-VSMTEKFMTK-PVRILLKRDELTLD-GIKQFFVSVEKEDWKFGTLCDIYDSLTIT 272
Query: 229 GSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAF 288
++I +C T K V+++++ ++ + HG M K REE + F E RV++ T
Sbjct: 273 QAVI-FCNTKKKVDQLTEQMRDANFTVASMHGDMVQKEREEIIKSFRSGENRVLITTDIL 331
Query: 289 GMGIDKPDVRHVIHYGCPKTLESYYQE---SGRCGRDGIA 325
GID V VI+Y P E+Y SGR GR G+A
Sbjct: 332 ARGIDVQQVSLVINYDLPIDRENYIHRIGRSGRFGRKGVA 371
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 188 (71.2 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 83/352 (23%), Positives = 154/352 (43%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV-----------TGKTALV 58
G++ P Q ++ RD + + TGSGK+L Y LP LV G L+
Sbjct: 184 GFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLI 243
Query: 59 VSPLISL-MQDQVMSLK---QRGINAEFL-GSAQTDSSVQTKAETGYFQLLFMTPEKACI 113
++P L +Q Q S K + G+ + + G A ++ G +++ TP + I
Sbjct: 244 LAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRD-LRRGV-EIVIATPGRL-I 300
Query: 114 IPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATE 173
+ LK V +DEA + + G + ++ K + ++R L +AT
Sbjct: 301 DMLECQHTNLKR-VTYLVLDEADRMLDMGFEPQIR-KIVSQIRP-----DRQTLLWSATW 353
Query: 174 KVRIDIINSLKLKNPY-VTIASFDRK---NLFYGVKVINRGQSFVDELVQEILKSVAGAG 229
++ + L++PY I S D K ++ ++++ + + + L+ +LK +
Sbjct: 354 PREVETLARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKY-NRLLT-LLKQLMDGS 411
Query: 230 SIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFG 289
I+++ T + +++++ L+ G A HG R+ F +M AT
Sbjct: 412 KILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAA 471
Query: 290 MGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN--FAK 339
G+D D++ V++Y P TLE Y GR GR G + + ++ N FA+
Sbjct: 472 RGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFAR 523
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 184 (69.8 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 85/354 (24%), Positives = 157/354 (44%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV--------- 51
+V TL + GY P Q + I I+ K+D + TG+GK+ + LP L
Sbjct: 12 LVDTLAE-LGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMADNQSD 70
Query: 52 -TGKT--ALVVSPLISL-MQDQVMSLKQ-RGINAEFLGSAQTDSSVQTKAET--GYFQLL 104
K ALV+ P L +Q Q +K +G + +G A S++ + +L
Sbjct: 71 HAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIR-VGIAYGGVSIEAQQAVFNAGIDVL 129
Query: 105 FMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGH--DFRLEYKQLDKLRTFLLGV 162
TP + L + +F DEA + + G + + KQ+ R LL
Sbjct: 130 IATPGRLLDHLRQGALNLNQLNTLVF--DEADRMLDMGFMDEIQAVLKQVPAQRQTLLFS 187
Query: 163 PFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEIL 222
+ + + K + +++ P T A +++ Y + +R FV LV+
Sbjct: 188 ATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQR--VYAIDS-DRKTEFVSHLVRS-- 242
Query: 223 KSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVM 282
K+ ++++ T + V++++ L +LGV ++HG + ARE+ + F + ++V+
Sbjct: 243 KNWQ---QVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVL 299
Query: 283 VATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336
VAT G+D ++++VI++ P E Y GR GR G A + +++ +
Sbjct: 300 VATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQED 353
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 184 (69.8 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 85/354 (24%), Positives = 157/354 (44%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV--------- 51
+V TL + GY P Q + I I+ K+D + TG+GK+ + LP L
Sbjct: 12 LVDTLAE-LGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMADNQSD 70
Query: 52 -TGKT--ALVVSPLISL-MQDQVMSLKQ-RGINAEFLGSAQTDSSVQTKAET--GYFQLL 104
K ALV+ P L +Q Q +K +G + +G A S++ + +L
Sbjct: 71 HAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIR-VGIAYGGVSIEAQQAVFNAGIDVL 129
Query: 105 FMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGH--DFRLEYKQLDKLRTFLLGV 162
TP + L + +F DEA + + G + + KQ+ R LL
Sbjct: 130 IATPGRLLDHLRQGALNLNQLNTLVF--DEADRMLDMGFMDEIQAVLKQVPAQRQTLLFS 187
Query: 163 PFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEIL 222
+ + + K + +++ P T A +++ Y + +R FV LV+
Sbjct: 188 ATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQR--VYAIDS-DRKTEFVSHLVRS-- 242
Query: 223 KSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVM 282
K+ ++++ T + V++++ L +LGV ++HG + ARE+ + F + ++V+
Sbjct: 243 KNWQ---QVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVL 299
Query: 283 VATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336
VAT G+D ++++VI++ P E Y GR GR G A + +++ +
Sbjct: 300 VATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQED 353
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 186 (70.5 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 90/345 (26%), Positives = 146/345 (42%)
Query: 29 RDCLVVMATGSGKSLCYQLPPLV-----------TGKTALVVSPLISL-MQDQVMSLK-- 74
RD + + ATGSGK+L Y LP +V G LV++P L +Q Q K
Sbjct: 165 RDMIGIAATGSGKTLSYCLPSIVHINAQPQLQYGDGPIVLVLAPTRELAVQIQTECSKFG 224
Query: 75 --QRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAV 132
R N G A ++ A G ++ TP + +I + K V +
Sbjct: 225 KSSRIRNTCVYGGAPKGPQIRDLAR-GV-EICIATPGR--LIDMLEAGKTNLKRVTYLVL 280
Query: 133 DEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPY-VT 191
DEA + + G + ++ K +D++R + + A +++ D +N +P VT
Sbjct: 281 DEADRMLDMGFEPQIR-KIVDQIRPDRQTLMWSATWPKEVQQLTRDYLN-----DPIQVT 334
Query: 192 IASFD---RKNLFYGVKVINRGQSFVDELVQEILKSVAGAGS-IIVYCMTIKDVEEISKA 247
I S + + V+VI+ S D LV+ + ++ + I+V+ T + +EI+
Sbjct: 335 IGSLELAASHTITQLVEVIDEF-SKRDRLVKHLESALNEKDNKILVFASTKRTCDEITTY 393
Query: 248 LKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPK 307
L+ G A HG R+ F + + +MVAT GID + HVI+Y P
Sbjct: 394 LRSDGWPALAIHGDKEQNERDWVLDEFRKGKTSIMVATDVAARGIDVKGITHVINYDMPG 453
Query: 308 TLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQ 352
+E Y GR GR G + ++ N G C + NQ
Sbjct: 454 NIEDYVHRIGRTGRGGASGTAISFFTEGNSKLGGDLCKIMREANQ 498
>TAIR|locus:504955106 [details] [associations]
symbol:emb1138 "embryo defective 1138" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
Uniprot:Q8L7S8
Length = 748
Score = 187 (70.9 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 87/332 (26%), Positives = 147/332 (44%)
Query: 16 PYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL--VTGK----TA----------LVV 59
P Q+ V+ ++ RD + TG+GK+L + +P + +T + TA LV+
Sbjct: 127 PIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVL 186
Query: 60 SPLISLMQDQVMSLKQRGINAEFLGSA----QTDSSVQTKAETGYFQLLFMTPEKACIIP 115
+P L + +K+ +A +L + ++Q A T ++ TP + II
Sbjct: 187 APTRELAKQVEKEIKE---SAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGR--IID 241
Query: 116 ISFWSKLLKAGVCLFAV-DEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEK 174
+ + LK G + V DEA + G + +E L+ L T + F A T +K
Sbjct: 242 L-IEGRSLKLGEVEYLVLDEADQMLAVGFEEAVE-SILENLPTKRQSMLFSATMPTWVKK 299
Query: 175 V-RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDE--LVQEILKSVAGAGSI 231
+ R + N L + + D K L G+K+ + + ++ +++ A G
Sbjct: 300 LARKYLDNPLNID----LVGDQDEK-LAEGIKLYAIATTSTSKRTILSDLITVYAKGGKT 354
Query: 232 IVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMG 291
IV+ T +D +E+S AL + HG + RE F + + V+VAT G
Sbjct: 355 IVFTQTKRDADEVSLALSN-SIATEALHGDISQHQRERTLNAFRQGKFTVLVATDVASRG 413
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
+D P+V VIHY P E++ SGR GR G
Sbjct: 414 LDIPNVDLVIHYELPNDPETFVHRSGRTGRAG 445
>MGI|MGI:1919297 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
Genevestigator:Q810A7 Uniprot:Q810A7
Length = 929
Score = 188 (71.2 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 87/349 (24%), Positives = 154/349 (44%)
Query: 11 YSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV-----------TGKTALVV 59
Y+ P Q + + RD + + TGSGK+ + P L+ G A++V
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 332
Query: 60 SPLISLMQDQVMSLKQRGINAEFLGSAQT--DSSV--QTKAETGYFQLLFMTPEKACIIP 115
P L Q K+ G A L S S+ Q KA +++ TP +
Sbjct: 333 CPTRELCQQIHAECKRFG-KAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391
Query: 116 ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
+ L + +F DEA + + G ++++ +R + F A EK+
Sbjct: 392 KKKATNLQRVSYLVF--DEADRMFDMGFEYQVR-SIASHVRPDRQTLLFSATFRKKIEKL 448
Query: 176 RIDI-INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVY 234
DI I+ +++ + A+ D + V++++ G S + L + +++ + +GS++++
Sbjct: 449 ARDILIDPIRVVQGDIGEANEDVTQI---VEILHSGPSKWNWLTRRLVEFTS-SGSVLLF 504
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
+ EE++ LKQ G G HG M R + F + +I V+VAT G+D
Sbjct: 505 VTKKANAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDI 564
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCW--LYYARSNFAKGD 341
P ++ VI+Y + ++++ GR GR G V + L SNFA GD
Sbjct: 565 PSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFA-GD 612
>UNIPROTKB|E2RFF1 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
Length = 933
Score = 188 (71.2 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 87/349 (24%), Positives = 154/349 (44%)
Query: 11 YSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV-----------TGKTALVV 59
Y+ P Q + + RD + + TGSGK+ + P L+ G A++V
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 332
Query: 60 SPLISLMQDQVMSLKQRGINAEFLGSAQT--DSSV--QTKAETGYFQLLFMTPEKACIIP 115
P L Q K+ G A L S S+ Q KA +++ TP +
Sbjct: 333 CPTRELCQQIHAECKRFG-KAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391
Query: 116 ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
+ L + +F DEA + + G ++++ +R + F A EK+
Sbjct: 392 KKKATNLQRVSYLVF--DEADRMFDMGFEYQVR-SIASHVRPDRQTLLFSATFRKKIEKL 448
Query: 176 RIDI-INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVY 234
DI I+ +++ + A+ D + V++++ G S + L + +++ + +GS++++
Sbjct: 449 ARDILIDPIRVVQGDIGEANEDVTQI---VEILHSGPSKWNWLTRRLVEFTS-SGSVLLF 504
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
+ EE++ LKQ G G HG M R + F + +I V+VAT G+D
Sbjct: 505 VTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDI 564
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCW--LYYARSNFAKGD 341
P ++ VI+Y + ++++ GR GR G V + L SNFA GD
Sbjct: 565 PSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFA-GD 612
>UNIPROTKB|Q86XP3 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
Ensembl:ENST00000389924 Ensembl:ENST00000457800
Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
Genevestigator:Q86XP3 Uniprot:Q86XP3
Length = 938
Score = 188 (71.2 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 87/349 (24%), Positives = 154/349 (44%)
Query: 11 YSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV-----------TGKTALVV 59
Y+ P Q + + RD + + TGSGK+ + P L+ G A++V
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 332
Query: 60 SPLISLMQDQVMSLKQRGINAEFLGSAQT--DSSV--QTKAETGYFQLLFMTPEKACIIP 115
P L Q K+ G A L S S+ Q KA +++ TP +
Sbjct: 333 CPTRELCQQIHAECKRFG-KAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391
Query: 116 ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
+ L + +F DEA + + G ++++ +R + F A EK+
Sbjct: 392 KKKATNLQRVSYLVF--DEADRMFDMGFEYQVR-SIASHVRPDRQTLLFSATFRKKIEKL 448
Query: 176 RIDI-INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVY 234
DI I+ +++ + A+ D + V++++ G S + L + +++ + +GS++++
Sbjct: 449 ARDILIDPIRVVQGDIGEANEDVTQI---VEILHSGPSKWNWLTRRLVEFTS-SGSVLLF 504
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
+ EE++ LKQ G G HG M R + F + +I V+VAT G+D
Sbjct: 505 VTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDI 564
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCW--LYYARSNFAKGD 341
P ++ VI+Y + ++++ GR GR G V + L SNFA GD
Sbjct: 565 PSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFA-GD 612
>UNIPROTKB|F1RSJ7 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
Length = 941
Score = 188 (71.2 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 87/349 (24%), Positives = 154/349 (44%)
Query: 11 YSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV-----------TGKTALVV 59
Y+ P Q + + RD + + TGSGK+ + P L+ G A++V
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 332
Query: 60 SPLISLMQDQVMSLKQRGINAEFLGSAQT--DSSV--QTKAETGYFQLLFMTPEKACIIP 115
P L Q K+ G A L S S+ Q KA +++ TP +
Sbjct: 333 CPTRELCQQIHAECKRFG-KAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391
Query: 116 ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
+ L + +F DEA + + G ++++ +R + F A EK+
Sbjct: 392 KKKATNLQRVSYLVF--DEADRMFDMGFEYQVR-SIASHVRPDRQTLLFSATFRKKIEKL 448
Query: 176 RIDI-INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVY 234
DI I+ +++ + A+ D + V++++ G S + L + +++ + +GS++++
Sbjct: 449 ARDILIDPIRVVQGDIGEANEDVTQI---VEILHSGPSKWNWLTRRLVEFTS-SGSVLLF 504
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
+ EE++ LKQ G G HG M R + F + +I V+VAT G+D
Sbjct: 505 VTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDI 564
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCW--LYYARSNFAKGD 341
P ++ VI+Y + ++++ GR GR G V + L SNFA GD
Sbjct: 565 PSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFA-GD 612
>UNIPROTKB|Q5R7D1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
Length = 942
Score = 188 (71.2 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 87/349 (24%), Positives = 156/349 (44%)
Query: 11 YSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV-----------TGKTALVV 59
Y+ P Q + + RD + + TGSGK+ + P L+ G A++V
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 332
Query: 60 SPLISLMQDQVMSLKQRGINAEFLGSAQT--DSSV--QTKAETGYFQLLFMTPEKACIIP 115
P L Q Q+ + +R A L S S+ Q KA +++ TP +
Sbjct: 333 CPTRELCQ-QIHAEGKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391
Query: 116 ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
+ L + +F DEA + + G ++++ +R + F A EK+
Sbjct: 392 KKKATNLQRVSYLVF--DEADRMFDMGFEYQVR-SIASHVRPDRQTLLFSATFRKKIEKL 448
Query: 176 RIDI-INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVY 234
DI I+ +++ + A+ D + V++++ G S + L + +++ + +GS++++
Sbjct: 449 ARDILIDPIRVVQGDIGEANEDVTQI---VEILHSGPSKWNWLTRRLVEFTS-SGSVLLF 504
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
+ EE++ LKQ G G HG M R + F + +I V+VAT G+D
Sbjct: 505 VTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDI 564
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCW--LYYARSNFAKGD 341
P ++ VI+Y + ++++ GR GR G V + L SNFA GD
Sbjct: 565 PSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFA-GD 612
>RGD|1304909 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304909
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0003676 EMBL:CH473948 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
CTD:11325 KO:K12835 OrthoDB:EOG47WNN9 GeneTree:ENSGT00610000086076
IPI:IPI00361283 RefSeq:NP_001100529.1 UniGene:Rn.154550
Ensembl:ENSRNOT00000013046 GeneID:303607 KEGG:rno:303607
UCSC:RGD:1304909 NextBio:651732 Uniprot:D4A031
Length = 929
Score = 187 (70.9 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 87/349 (24%), Positives = 154/349 (44%)
Query: 11 YSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV-----------TGKTALVV 59
Y+ P Q + + RD + + TGSGK+ + P L+ G A++V
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 332
Query: 60 SPLISLMQDQVMSLKQRGINAEFLGSAQT--DSSV--QTKAETGYFQLLFMTPEKACIIP 115
P L Q K+ G A L S S+ Q KA +++ TP +
Sbjct: 333 CPTRELCQQIHAECKRFG-KAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391
Query: 116 ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
+ L + +F DEA + + G ++++ +R + F A EK+
Sbjct: 392 KKKATNLQRVSYLVF--DEADRMFDMGFEYQVR-SIASHVRPDRQTLLFSATFRKKIEKL 448
Query: 176 RIDI-INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVY 234
DI I+ +++ + A+ D + V++++ G S + L + +++ + +GS++++
Sbjct: 449 ARDILIDPIRVVQGDIGEANEDVTQI---VEILHSGPSKWNWLTRRLVEFTS-SGSVLLF 504
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
+ EE++ LKQ G G HG M R + F + +I V+VAT G+D
Sbjct: 505 VTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVILDFKKKDIPVLVATDVAARGLDI 564
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCW--LYYARSNFAKGD 341
P ++ VI+Y + ++++ GR GR G V + L SNFA GD
Sbjct: 565 PSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFA-GD 612
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 182 (69.1 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 92/348 (26%), Positives = 149/348 (42%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPP---LVTGKT------ALVVS 60
GY P Q I +E RD L + TG+GK+ + LP L G+ +LV+
Sbjct: 21 GYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITLLARGRARARMPRSLVLC 80
Query: 61 PLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQ----LLFMTPEKACIIPI 116
P L + + + L A V K + +L TP + ++
Sbjct: 81 PTRELAAQVAENFDTYTKHLK-LTKALLIGGVSFKEQDALIDRGVDVLIATPGR--LLDH 137
Query: 117 SFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTA--TATEK 174
KLL GV + VDEA + + G +E R F L PF T +AT
Sbjct: 138 FERGKLLLTGVQIMVVDEADRMLDMGFIPDIE-------RIFSL-TPFTRQTLFFSATMA 189
Query: 175 VRIDIINSLKLKNPY-VTIA--SFDRKNLFYGVKVINRGQSFVDELVQE--ILKSVAGA- 228
I+ I + L P + +A + + + GV V+ +G E ++ +L+++ A
Sbjct: 190 PEIERITNTFLSAPARIEVARQATASETIEQGV-VLFKGSRRDREASEKRAVLRALIDAE 248
Query: 229 G----SIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVA 284
G + I++C DV+ ++K+L++ G A HG + R F ++R++VA
Sbjct: 249 GEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRTRTLDGFREGKLRLLVA 308
Query: 285 TMAFGMGIDKPDVRHVIHYGCPKTLESYYQE---SGRCGRDGIA-SVC 328
+ G+D P V HV ++ P E Y +GR GRDG A ++C
Sbjct: 309 SDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKAITLC 356
>UNIPROTKB|F1NL04 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
of protein localization" evidence=IEA] [GO:0033391 "chromatoid
body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
Ensembl:ENSGALT00000038830 Uniprot:F1NL04
Length = 542
Score = 182 (69.1 bits), Expect = 4.3e-11, P = 4.3e-11
Identities = 90/342 (26%), Positives = 153/342 (44%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP----PLVTGKTA--------- 56
GYS P QK I I RD + TGSGK+ + LP + G TA
Sbjct: 186 GYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVDRMMKDGVTASAFQKQQEP 245
Query: 57 --LVVSPLISLMQDQVMSLKQ--RG--INAEFL-GSAQTDSSVQTKAETGYFQLLFMTPE 109
++V+P L+ + ++ G I + G QT S++ + G +L TP
Sbjct: 246 QCIIVAPTRELINQIFLEARKFVYGTCIRPVVIYGGTQTGHSIRQIMQ-GC-NILCATPG 303
Query: 110 KACIIPISFWSKLLKAGVCLFAVDEAHCISEWGH--DFR--LEYKQL---DKLRTFLLGV 162
+ ++ I K+ V +DEA + + G D + + Y ++ D+ +T +
Sbjct: 304 R--LLDIIEKGKISLVEVKYLVLDEADRMLDMGFGLDMKKLISYPEMPSKDRRQTLMFSA 361
Query: 163 PFVA-LTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEI 221
F + A E ++ D I L + N + ++N+ ++ R D+L+ EI
Sbjct: 362 TFPEEVQRLAGEFLKTDYI-FLVIGNTCGACSDV-QQNILQVPRLSKR-----DKLI-EI 413
Query: 222 LKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRV 281
L+S G ++ V+ T K + ++ L Q + + + HG + RE A R F + ++
Sbjct: 414 LQSTGGERTM-VFVDTKKKADYLAAFLCQENLPSTSIHGDREQREREIALRDFRSGKCQI 472
Query: 282 MVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
+VAT G+D +V+HVI++ P T+E Y GR GR G
Sbjct: 473 LVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRTGRCG 514
Score = 151 (58.2 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 66/253 (26%), Positives = 118/253 (46%)
Query: 84 GSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGH 143
G QT S++ + G +L TP + ++ I K+ V +DEA + + G
Sbjct: 280 GGTQTGHSIRQIMQ-GC-NILCATPGR--LLDIIEKGKISLVEVKYLVLDEADRMLDMGF 335
Query: 144 --DFR--LEYKQL---DKLRTFLLGVPFVA-LTATATEKVRIDIINSLKLKNPYVTIASF 195
D + + Y ++ D+ +T + F + A E ++ D I L + N +
Sbjct: 336 GLDMKKLISYPEMPSKDRRQTLMFSATFPEEVQRLAGEFLKTDYI-FLVIGNTCGACSDV 394
Query: 196 DRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKA 255
++N+ ++ R D+L+ EIL+S G ++ V+ T K + ++ L Q + +
Sbjct: 395 -QQNILQVPRLSKR-----DKLI-EILQSTGGERTM-VFVDTKKKADYLAAFLCQENLPS 446
Query: 256 GTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQE 315
+ HG + RE A R F + +++VAT G+D +V+HVI++ P T+E Y
Sbjct: 447 TSIHGDREQREREIALRDFRSGKCQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHR 506
Query: 316 ---SGRCGRDGIA 325
+GRCG G A
Sbjct: 507 IGRTGRCGNTGKA 519
>UNIPROTKB|F1N991 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
IPI:IPI00819436 ProteinModelPortal:F1N991
Ensembl:ENSGALT00000023724 Uniprot:F1N991
Length = 568
Score = 182 (69.1 bits), Expect = 4.7e-11, P = 4.7e-11
Identities = 90/342 (26%), Positives = 153/342 (44%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP----PLVTGKTA--------- 56
GYS P QK I I RD + TGSGK+ + LP + G TA
Sbjct: 186 GYSKLTPVQKHSIPVIQAGRDLMSCAQTGSGKTAAFLLPIVDRMMKDGVTASAFQKQQEP 245
Query: 57 --LVVSPLISLMQDQVMSLKQ--RG--INAEFL-GSAQTDSSVQTKAETGYFQLLFMTPE 109
++V+P L+ + ++ G I + G QT S++ + G +L TP
Sbjct: 246 QCIIVAPTRELINQIFLEARKFVYGTCIRPVVIYGGTQTGHSIRQIMQ-GC-NILCATPG 303
Query: 110 KACIIPISFWSKLLKAGVCLFAVDEAHCISEWGH--DFR--LEYKQL---DKLRTFLLGV 162
+ ++ I K+ V +DEA + + G D + + Y ++ D+ +T +
Sbjct: 304 R--LLDIIEKGKISLVEVKYLVLDEADRMLDMGFGLDMKKLISYPEMPSKDRRQTLMFSA 361
Query: 163 PFVA-LTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEI 221
F + A E ++ D I L + N + ++N+ ++ R D+L+ EI
Sbjct: 362 TFPEEVQRLAGEFLKTDYI-FLVIGNTCGACSDV-QQNILQVPRLSKR-----DKLI-EI 413
Query: 222 LKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRV 281
L+S G ++ V+ T K + ++ L Q + + + HG + RE A R F + ++
Sbjct: 414 LQSTGGERTM-VFVDTKKKADYLAAFLCQENLPSTSIHGDREQREREIALRDFRSGKCQI 472
Query: 282 MVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
+VAT G+D +V+HVI++ P T+E Y GR GR G
Sbjct: 473 LVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRTGRCG 514
Score = 151 (58.2 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 66/253 (26%), Positives = 118/253 (46%)
Query: 84 GSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGH 143
G QT S++ + G +L TP + ++ I K+ V +DEA + + G
Sbjct: 280 GGTQTGHSIRQIMQ-GC-NILCATPGR--LLDIIEKGKISLVEVKYLVLDEADRMLDMGF 335
Query: 144 --DFR--LEYKQL---DKLRTFLLGVPFVA-LTATATEKVRIDIINSLKLKNPYVTIASF 195
D + + Y ++ D+ +T + F + A E ++ D I L + N +
Sbjct: 336 GLDMKKLISYPEMPSKDRRQTLMFSATFPEEVQRLAGEFLKTDYI-FLVIGNTCGACSDV 394
Query: 196 DRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKA 255
++N+ ++ R D+L+ EIL+S G ++ V+ T K + ++ L Q + +
Sbjct: 395 -QQNILQVPRLSKR-----DKLI-EILQSTGGERTM-VFVDTKKKADYLAAFLCQENLPS 446
Query: 256 GTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQE 315
+ HG + RE A R F + +++VAT G+D +V+HVI++ P T+E Y
Sbjct: 447 TSIHGDREQREREIALRDFRSGKCQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHR 506
Query: 316 ---SGRCGRDGIA 325
+GRCG G A
Sbjct: 507 IGRTGRCGNTGKA 519
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 180 (68.4 bits), Expect = 4.9e-11, P = 4.9e-11
Identities = 80/328 (24%), Positives = 141/328 (42%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL------VTGKT-ALVVSP- 61
GY P Q I ++ RD + + TG+GK+ + LP L G+ ALV++P
Sbjct: 20 GYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPILHRLQQGERGRVRALVIAPT 79
Query: 62 --LISLMQDQVMSL-KQRGINAEFL-GSAQTDSSVQTKAETGYFQLLFMTPEKACIIPIS 117
L + D ++L +Q + + + G + VQ K + G +++ P + ++
Sbjct: 80 RELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQ-KLKAGA-EVVVACPGR--LLDHI 135
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGH--DFRLEYKQLDKLR-TFLLGVPFVALTATATEK 174
+ + + + +DEA + + G D R K L R T L T +
Sbjct: 136 AQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPPRRQTLLFSATMPIDIRTLAQD 195
Query: 175 VRIDIIN-SLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIV 233
+ +D + + P VT+A + Y V+ Q L+ E+L+ S+++
Sbjct: 196 ILVDPVTVQVGTVAPAVTVA-----HALYPVE-----QHLKTPLLLELLRHT-DTESVLI 244
Query: 234 YCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293
+ T + + + L++ G +A + G + R+ A F +++VAT GID
Sbjct: 245 FTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQILVATDIAARGID 304
Query: 294 KPDVRHVIHYGCPKTLESYYQESGRCGR 321
V HVI+Y P T E+Y GR GR
Sbjct: 305 VSQVSHVINYDIPDTAEAYIHRIGRTGR 332
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 153 (58.9 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 38/124 (30%), Positives = 59/124 (47%)
Query: 232 IVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMG 291
I++ T +D E ++ LK G A HG M AR + IR++VAT G
Sbjct: 248 IIFSATKRDAENLALELKAQGHSAAALHGDMPQNARNRTIAAMKQGRIRLLVATDVAARG 307
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN----FAKGDFYCGES 347
+D + HVI++ PK E Y GR GR G + + + +A N A+ + Y G++
Sbjct: 308 LDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIA-ISFASLNEVNYLARIERYIGQT 366
Query: 348 QTEN 351
E+
Sbjct: 367 LPEH 370
Score = 70 (29.7 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL 50
GY+ P Q + R +E D L TG+GK+ + LP L
Sbjct: 20 GYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPAL 60
>WB|WBGene00022029 [details] [associations]
symbol:Y65B4A.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0018991 "oviposition" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0018996 GO:GO:0040011 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT EMBL:FO081482
RefSeq:NP_490761.2 ProteinModelPortal:Q9BL61 SMR:Q9BL61
STRING:Q9BL61 PaxDb:Q9BL61 EnsemblMetazoa:Y65B4A.6 GeneID:190485
KEGG:cel:CELE_Y65B4A.6 UCSC:Y65B4A.6 CTD:190485 WormBase:Y65B4A.6
InParanoid:Q9BL61 NextBio:945920 Uniprot:Q9BL61
Length = 399
Score = 178 (67.7 bits), Expect = 6.3e-11, P = 6.3e-11
Identities = 82/342 (23%), Positives = 149/342 (43%)
Query: 5 LKKYFGYSVFRP--YQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT------A 56
L+ + Y +P Q+ I I++ RD + +G+GK+ + + L + T A
Sbjct: 38 LRGIYAYGFEKPSAIQQRAIPAILKARDVIAQAQSGTGKTATFSISVLQSLDTQVRETQA 97
Query: 57 LVVSPLISL---MQDQVMSLKQRGINAEF---LGSAQTDSSVQTKAETGYFQLLFMTPEK 110
L++SP L +Q V++L +N + +G ++ K + G ++ TP +
Sbjct: 98 LILSPTRELAVQIQKVVLALGDY-MNVQCHACIGGTNLGEDIR-KLDYGQ-HVVSGTPGR 154
Query: 111 ACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTAT 170
+ + L + L +DEA + G +L Y D R G V L+AT
Sbjct: 155 --VFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQL-Y---DIYRYLPPGAQVVLLSAT 208
Query: 171 ATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVK----VINRGQSFVDELVQEILKSVA 226
++ +++ + + +P + D L G+K ++R + D L+ L
Sbjct: 209 LPHEI-LEMTSKF-MTDPIRILVKRDELTL-EGIKQFFVAVDREEWKFDTLID--LYDTL 263
Query: 227 GAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM 286
+++C T + V+ ++ +K+ + HG M K R+E + F RV+++T
Sbjct: 264 TITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTD 323
Query: 287 AFGMGIDKPDVRHVIHYGCPKTLESYYQE---SGRCGRDGIA 325
+ G+D P V VI+Y P E Y SGR GR G+A
Sbjct: 324 VWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVA 365
>WB|WBGene00013214 [details] [associations]
symbol:Y54G11A.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL034488 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
HSSP:P10081 PIR:T27176 RefSeq:NP_496973.1 ProteinModelPortal:Q9XVZ6
SMR:Q9XVZ6 STRING:Q9XVZ6 PaxDb:Q9XVZ6 EnsemblMetazoa:Y54G11A.3
GeneID:175083 KEGG:cel:CELE_Y54G11A.3 UCSC:Y54G11A.3 CTD:175083
WormBase:Y54G11A.3 InParanoid:Q9XVZ6 OMA:NGFEKPS NextBio:886680
Uniprot:Q9XVZ6
Length = 504
Score = 150 (57.9 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 78/298 (26%), Positives = 129/298 (43%)
Query: 57 LVVSPLISLMQD---QVMSLKQRGINAEFL--GSAQTDSSVQTKAETGYFQLLFMTPEKA 111
LV+SP L Q +V G + L G ++ + Q +A G +++ TP +
Sbjct: 167 LVLSPTRELAQQIEGEVKKYSYNGYKSVCLYGGGSRPE---QVEACRGGVEIVIATPGR- 222
Query: 112 CIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALT-AT 170
+ +S + A V +DEA + + G + + + L ++R L VALT AT
Sbjct: 223 -LTDLSNDGVISLASVTYVVLDEADRMLDMGFEVAIR-RILFEIRPDRL----VALTSAT 276
Query: 171 ATEKVRIDIINSLKLKNPYVTI-ASFDR---KNLFYGVKVINRGQSF--VDELVQEILKS 224
E VR + K + + S D K++ + + F V E+V L +
Sbjct: 277 WPEGVRK--LTDKYTKEAVMAVNGSLDLTSCKSVTQFFEFVPHDSRFLRVCEIVN-FLTA 333
Query: 225 VAGAG-SIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMV 283
G +I++ + + +S G+ + HG RE + + E++++V
Sbjct: 334 AHGQNYKMIIFVKSKVMADHLSSDFCMKGINSQGLHGGRSQSDREMSLNMLRSGEVQILV 393
Query: 284 ATMAFGMGIDKPDVRHVIHYGCPKTLESYYQE---SGRCGRDGIA-SVCWLYYARSNF 337
AT GID PD+ HV++Y P +E Y +GR GR G A S W + RSNF
Sbjct: 394 ATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVGRTGRAGRKGEAMSFLW-WNDRSNF 450
Score = 74 (31.1 bits), Expect = 6.4e-11, Sum P(2) = 6.4e-11
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV 51
G+ P Q + ++ +DC+ V TGSGK+L + LP L+
Sbjct: 103 GFEKPSPIQSQMWPLLLSGQDCIGVSQTGSGKTLAFLLPALL 144
>TAIR|locus:2176192 [details] [associations]
symbol:AT5G51280 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000741 "karyogamy"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AB023044 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K13116
OMA:DICRYLC HOGENOM:HOG000268792 EMBL:AK226380 IPI:IPI00530020
RefSeq:NP_199941.1 UniGene:At.29686 ProteinModelPortal:Q9LU46
SMR:Q9LU46 PaxDb:Q9LU46 PRIDE:Q9LU46 DNASU:835202
EnsemblPlants:AT5G51280.1 GeneID:835202 KEGG:ath:AT5G51280
GeneFarm:1011 TAIR:At5g51280 InParanoid:Q9LU46 PhylomeDB:Q9LU46
ProtClustDB:CLSN2685494 Genevestigator:Q9LU46 GermOnline:AT5G51280
Uniprot:Q9LU46
Length = 591
Score = 181 (68.8 bits), Expect = 6.5e-11, P = 6.5e-11
Identities = 93/357 (26%), Positives = 149/357 (41%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP------------ 48
++ TLK+ G P Q + I+ RD + + TGSGK+L + LP
Sbjct: 157 VLDTLKEK-GIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMM 215
Query: 49 PLVTGK--TALVVSPLISLMQ------DQ-VMSLKQRGINA--EFLGSAQTDSSVQTKAE 97
P+ G+ L+V P L + +Q V L + G L D Q +
Sbjct: 216 PIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVV 275
Query: 98 TGYFQLLFMTPEKACIIPISFWSKLLKAGVCLF-AVDEAHCISEWGH--DFRLEYKQLDK 154
++ TP + + K + C + +DEA + + G D R +
Sbjct: 276 KRGVHIVVATPGR---LKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKS 332
Query: 155 LRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNL--FYGVKVINRGQS 212
R LL +AT K++I S +K V + NL V+ + +
Sbjct: 333 QRQTLL------FSATMPTKIQI-FARSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAK 385
Query: 213 FVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHR 272
V L E L+ + ++++C DV++I + L GV+A HG + RE A
Sbjct: 386 IVYLL--ECLQKTSPP--VLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEDREYAIS 441
Query: 273 LFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQE---SGRCGRDGIAS 326
F + V+VAT G+D PD++HVI+Y P +E+Y +GRCG+ GIA+
Sbjct: 442 SFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIAT 498
>UNIPROTKB|E1BJD2 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
Length = 946
Score = 183 (69.5 bits), Expect = 7.8e-11, P = 7.8e-11
Identities = 86/349 (24%), Positives = 154/349 (44%)
Query: 11 YSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV-----------TGKTALVV 59
Y+ P Q + + RD + + TGSGK+ + P L+ G A++V
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 332
Query: 60 SPLISLMQDQVMSLKQRGINAEFLGSAQT--DSSV--QTKAETGYFQLLFMTPEKACIIP 115
P L Q K+ G A L S S+ Q KA +++ TP +
Sbjct: 333 CPTRELCQQIHAECKRFG-KAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHV 391
Query: 116 ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
+ L + +F DEA + + G ++++ +R + F A EK+
Sbjct: 392 KKKATNLQRVSYLVF--DEADRMFDMGFEYQVR-SIASHVRPDRQTLLFSATFRKKIEKL 448
Query: 176 RIDI-INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVY 234
DI I+ +++ + A+ D + V++++ G + + L + +++ + +GS++++
Sbjct: 449 ARDILIDPIRVVQGDIGEANEDVTQI---VEILHSGSKW-NWLTRRLVEFTS-SGSVLLF 503
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
+ EE++ LKQ G G HG M R + F + +I V+VAT G+D
Sbjct: 504 VTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDI 563
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCW--LYYARSNFAKGD 341
P ++ VI+Y + ++++ GR GR G V + L SNFA GD
Sbjct: 564 PSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFA-GD 611
>WB|WBGene00018007 [details] [associations]
symbol:F33D11.10 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0018996 GO:GO:0003676
GO:GO:0000910 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 GO:GO:0001703 KO:K13025 OMA:IFGKQPF
EMBL:FO080753 PIR:T32773 RefSeq:NP_491703.1
ProteinModelPortal:O44781 SMR:O44781 DIP:DIP-27243N IntAct:O44781
MINT:MINT-1047941 STRING:O44781 PaxDb:O44781
EnsemblMetazoa:F33D11.10.1 EnsemblMetazoa:F33D11.10.2 GeneID:172258
KEGG:cel:CELE_F33D11.10 UCSC:F33D11.10.1 CTD:172258
WormBase:F33D11.10 InParanoid:O44781 NextBio:874709 Uniprot:O44781
Length = 399
Score = 177 (67.4 bits), Expect = 8.3e-11, P = 8.3e-11
Identities = 81/342 (23%), Positives = 149/342 (43%)
Query: 5 LKKYFGYSVFRP--YQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT------A 56
L+ + Y +P Q+ + I++ RD + +G+GK+ + + L + T A
Sbjct: 38 LRGIYAYGFEKPSAIQQRAVPAILKARDVIAQAQSGTGKTATFSISVLQSLDTQVRETQA 97
Query: 57 LVVSPLISL---MQDQVMSLKQRGINAEF---LGSAQTDSSVQTKAETGYFQLLFMTPEK 110
L++SP L +Q V++L +N + +G ++ K + G ++ TP +
Sbjct: 98 LILSPTRELAVQIQKVVLALGDY-MNVQCHACIGGTNLGEDIR-KLDYGQ-HVVSGTPGR 154
Query: 111 ACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTAT 170
+ + L + L +DEA + G +L Y D R G V L+AT
Sbjct: 155 --VFDMIRRRNLRTRAIKLLVLDEADEMLNKGFKEQL-Y---DIYRYLPPGAQVVLLSAT 208
Query: 171 ATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVK----VINRGQSFVDELVQEILKSVA 226
++ +++ + + +P + D L G+K ++R + D L+ L
Sbjct: 209 LPHEI-LEMTSKF-MTDPIRILVKRDELTL-EGIKQFFVAVDREEWKFDTLID--LYDTL 263
Query: 227 GAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM 286
+++C T + V+ ++ +K+ + HG M K R+E + F RV+++T
Sbjct: 264 TITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDRDEVMKEFRAGTTRVLISTD 323
Query: 287 AFGMGIDKPDVRHVIHYGCPKTLESYYQE---SGRCGRDGIA 325
+ G+D P V VI+Y P E Y SGR GR G+A
Sbjct: 324 VWARGLDVPQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVA 365
>UNIPROTKB|E1C6M6 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] InterPro:IPR001650
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005730 GO:GO:0003676 GO:GO:0004386
InterPro:IPR014001 PROSITE:PS51192 GeneTree:ENSGT00680000100003
EMBL:AADN02028008 IPI:IPI00822651 ProteinModelPortal:E1C6M6
Ensembl:ENSGALT00000040808 OMA:DWLENEA ArrayExpress:E1C6M6
Uniprot:E1C6M6
Length = 294
Score = 173 (66.0 bits), Expect = 8.4e-11, P = 8.4e-11
Identities = 43/122 (35%), Positives = 66/122 (54%)
Query: 216 ELVQEILKSVAGA-GSIIVYCMTIKDVEEIS--KALKQLGVKAGTYHGQMGSKAREEAHR 272
E++ +I++ +G+ G IV+C T K+ E++ ALKQ +A + HG + K RE +
Sbjct: 82 EVLGDIIQVYSGSHGRTIVFCETKKEANELALNSALKQ---EAQSLHGDIPQKQREVTLK 138
Query: 273 LFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYY 332
F V++AT G+D P+V VI PK ++SY SGR GR G +C +Y
Sbjct: 139 GFRNGVFEVLIATNVAARGLDIPEVDLVIQCSPPKDVDSYIHRSGRTGRAGRTGICICFY 198
Query: 333 AR 334
R
Sbjct: 199 QR 200
>UNIPROTKB|F1LX16 [details] [associations]
symbol:F1LX16 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00949361
Ensembl:ENSRNOT00000004240 Uniprot:F1LX16
Length = 659
Score = 172 (65.6 bits), Expect = 8.7e-11, Sum P(2) = 8.7e-11
Identities = 42/119 (35%), Positives = 64/119 (53%)
Query: 217 LVQEILKSVAG-AGSIIVYCMTIKDVEEISK--ALKQLGVKAGTYHGQMGSKAREEAHRL 273
++ ++++ +G G I++C T KD +E+S+ +KQ A + HG + K RE +
Sbjct: 306 VIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQ---DAQSLHGDIPQKQREITLKG 362
Query: 274 FIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYY 332
F D V+VAT G+D P+V V+ PK +ESY SGR GR G VC +Y
Sbjct: 363 FRNDNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFY 421
Score = 52 (23.4 bits), Expect = 8.7e-11, Sum P(2) = 8.7e-11
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP 48
L K G + P Q + +D + TG+GK+ + +P
Sbjct: 80 LLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIP 123
Score = 44 (20.5 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 19/50 (38%), Positives = 22/50 (44%)
Query: 39 SGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQT 88
SGK L Q TGKT PLI +Q + K RG + L A T
Sbjct: 102 SGKDLIAQART-GTGKTFSFAIPLIEKLQGGLQERK-RGRAPQVLVLAPT 149
Score = 37 (18.1 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT 88
+ ++ V LK RG+N F A+T
Sbjct: 73 ISEETVKLLKARGVNFLFPIQAKT 96
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 177 (67.4 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 89/341 (26%), Positives = 143/341 (41%)
Query: 3 STLKKYFGYSVF-RP--YQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP---------PL 50
STL K S + P QK I I+ K D + TG+GK+ + LP P
Sbjct: 14 STLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQLISVQPC 73
Query: 51 VTGKTALVVSPLISLMQDQVMSLKQRGINAEF-LGSAQTDSSVQTKAETGYFQ----LLF 105
ALV++P L Q S G + +G A V TK + + +L
Sbjct: 74 KPELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAY--GGVSTKKQISELKVGVDILI 131
Query: 106 MTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEY--KQLDKLRTFLLGVP 163
TP + ++ + + + + DEA + + G ++ + L K + LL
Sbjct: 132 ATPGR--LLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQTLL--- 186
Query: 164 FVALTATATEKVRIDIINSLKLKN-PYVTIASFDRKNLFYGVKVINRGQSFVDELVQEIL 222
F A A K+ +I+ K+ A+ D + L YGV +R + EL ++
Sbjct: 187 FSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGVDA-DRKR----ELTSFLI 241
Query: 223 KSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVM 282
S ++V+ T + ++++K + + GVK+ HG ARE+A F ++R +
Sbjct: 242 GS-RNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRAL 300
Query: 283 VATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
+AT GID + HVI+Y P E Y GR R G
Sbjct: 301 IATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAG 341
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 177 (67.4 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 89/341 (26%), Positives = 143/341 (41%)
Query: 3 STLKKYFGYSVF-RP--YQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP---------PL 50
STL K S + P QK I I+ K D + TG+GK+ + LP P
Sbjct: 14 STLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQQLISVQPC 73
Query: 51 VTGKTALVVSPLISLMQDQVMSLKQRGINAEF-LGSAQTDSSVQTKAETGYFQ----LLF 105
ALV++P L Q S G + +G A V TK + + +L
Sbjct: 74 KPELRALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAY--GGVSTKKQISELKVGVDILI 131
Query: 106 MTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEY--KQLDKLRTFLLGVP 163
TP + ++ + + + + DEA + + G ++ + L K + LL
Sbjct: 132 ATPGR--LLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPKTKQTLL--- 186
Query: 164 FVALTATATEKVRIDIINSLKLKN-PYVTIASFDRKNLFYGVKVINRGQSFVDELVQEIL 222
F A A K+ +I+ K+ A+ D + L YGV +R + EL ++
Sbjct: 187 FSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLVYGVDA-DRKR----ELTSFLI 241
Query: 223 KSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVM 282
S ++V+ T + ++++K + + GVK+ HG ARE+A F ++R +
Sbjct: 242 GS-RNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVRAL 300
Query: 283 VATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
+AT GID + HVI+Y P E Y GR R G
Sbjct: 301 IATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAG 341
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 183 (69.5 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 86/352 (24%), Positives = 155/352 (44%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV----------TGKTALVV 59
G+ P Q ++ RD + + TGSGK+L Y +P + G T L++
Sbjct: 454 GFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLIL 513
Query: 60 SP---LISLMQDQVMSL-KQRGINAEFL-GSAQTDSSVQTKAETGYFQLLFMTPEKACII 114
+P L + +QD+ + + I+ L G A ++ + E G ++ TP + I
Sbjct: 514 APTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLK-ELERGA-DIVVATPGRLNDI 571
Query: 115 PISFWSKLLK-AGVCLFAVDEAHCISEWGHD--FRLEYKQLDKLRTFLLGVPFVALTATA 171
K++ V L +DEA + + G + R ++ R L+ TAT
Sbjct: 572 ---LEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLM------YTATW 622
Query: 172 TEKVRIDIINSLKLKNPY-VTIASFDR----KNLFYGVKVINRGQSFVDELVQEILKSVA 226
++VR I + L L NP V I D K + V+V+ + + + +++IL+S
Sbjct: 623 PKEVR-KIASDL-LVNPVQVNIGRVDELAANKAITQYVEVVPQMEK--ERRLEQILRSQE 678
Query: 227 GAGSIIVYCMTIKDVEEISKAL-KQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVAT 285
+I++C T + + +++++ + G A HG R+ F + V++AT
Sbjct: 679 RGSKVIIFCSTKRLCDHLARSVGRHFG--AVVIHGDKTQGERDWVLNQFRSGKSCVLIAT 736
Query: 286 MAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNF 337
G+D D+R VI+Y P +E Y GR GR G V + ++ ++
Sbjct: 737 DVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDW 788
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 176 (67.0 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 84/333 (25%), Positives = 142/333 (42%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL---------VTGKT--ALV 58
GY P QK+ I +I D L + TG+GK+ + LP + + K+ +L+
Sbjct: 21 GYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIINKFGRNKIDIKAKSTRSLI 80
Query: 59 VSPLISLMQDQVMSLKQR----GINAEFL-GSAQTDSSVQTKAETGYFQLLFMTPEKACI 113
++P L + ++ G+ + + G + V + E G +L TP +
Sbjct: 81 LTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVDS-IELG-LDILVATPGRLLD 138
Query: 114 IPISFWSKLLKAGVCLFAVDEAHCISEWGH--DFRLEYKQLDKLRTFLLGVPFVALTATA 171
+ I KA + +F +DEA + + G D + +L K R LL F +A
Sbjct: 139 L-IETGDINFKA-LEVFVLDEADTMLDMGFFKDVQSIISKLPKSRQTLL---F-----SA 188
Query: 172 TEKVRIDIINSLKLKNPYVTIASFDRKNL-FYGVKVINRGQSFVDELVQEILKSVAGAGS 230
T I+I+ L +P + + + V + +S L+ IL A
Sbjct: 189 TMPAEIEILAEAILTDPTKIQITAETVTIDLVNQSVYHLDKSNKVPLLFNILTK-ADYEK 247
Query: 231 IIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGM 290
++++C T + I KAL++ + A + H REEA + F +RV+VAT
Sbjct: 248 VLIFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLRVLVATDVAAR 307
Query: 291 GIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
GID ++ VI+Y P+ +Y GR R G
Sbjct: 308 GIDVDNITLVINYNLPEDPRNYIHRIGRTARAG 340
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 178 (67.7 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 83/332 (25%), Positives = 141/332 (42%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPP---LVTGKT------ALVVS 60
GY++ P Q++ I I+ D V TG+GK+ + LP L TG+ L++
Sbjct: 23 GYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMIQRLSTGRARARMPRCLILC 82
Query: 61 PLISLMQDQVMSLKQRG----INAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPI 116
P L + ++ G + L + +T + G +L TP + ++
Sbjct: 83 PTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQETLLQRGV-DVLIATPGR--LMDQ 139
Query: 117 SFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKL----RTFLLGVPFVALTATAT 172
KLL GV +DEA + + G +E K KL +T L F
Sbjct: 140 FDRGKLLMMGVETLIIDEADRMLDMGFIPDIE-KICAKLPANRQTLLFSATFPTDIQRLA 198
Query: 173 EKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKV-INRGQSFVDELVQEILKSVAGAGSI 231
+ + D +++ P T + + + VK+ N G++ L + I + G
Sbjct: 199 KTFQKDP-KKIEVTRPAQTAETISQ----FVVKLPTNDGKARRTALRRVIEATNVKNG-- 251
Query: 232 IVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMG 291
IV+C +V+ ++ +L + G A HG + R E + F +++++VA+ G
Sbjct: 252 IVFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQRFRDGKLKLLVASDVAARG 311
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
+D PDV HV ++G P E Y GR GR G
Sbjct: 312 LDIPDVGHVFNFGPPPKDEDYVHRIGRTGRAG 343
>CGD|CAL0005460 [details] [associations]
symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
Uniprot:Q5APT8
Length = 564
Score = 178 (67.7 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 88/358 (24%), Positives = 151/358 (42%)
Query: 25 IIEKRDCLVVMATGSGKSLCYQLPPL----VTGKT----ALVVSPLISL-MQ--DQVMSL 73
++ +D + V TGSGK+ + +P + TG T L +SP L +Q D ++ L
Sbjct: 187 LLSGKDVIGVAETGSGKTFAFGVPAINNIITTGNTKTLSVLCISPTRELALQIYDNLIEL 246
Query: 74 K-QRGINAEFL-GSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFA 131
G+N + G D ++ K +T ++ TP + ++ + + V
Sbjct: 247 TADSGVNCVAVYGGVSKDDQIR-KIKTA--NVVVATPGR--LVDLINDGAINLGKVNYLV 301
Query: 132 VDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPY-V 190
+DEA + E G F + K + T + TAT ++VR ++ N+ + +P V
Sbjct: 302 LDEADRMLEKG--FEEDIKTIIS-NTSNSERQTLMFTATWPKEVR-ELANNF-MNSPVKV 356
Query: 191 TIASFDR----KNLFYGVKVINRGQSFVDELVQEILKSVAGAGS---IIVYCMTIKDVEE 243
T+ D K + V+VIN+ +L+Q + K A S I+++ + K+
Sbjct: 357 TVGDRDELSANKRITQVVEVINKFDK-EKKLIQLLRKYNANESSDNKILIFALYKKEASR 415
Query: 244 ISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHY 303
I LK+ HG + + R A F + +++AT G+D P+V+ VI+
Sbjct: 416 IENFLKRNRFSVAAIHGDLSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVKVVINL 475
Query: 304 GCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTAIMESLL 361
P T+E Y GR GR G + C + NQ + E LL
Sbjct: 476 TFPLTIEDYVHRIGRTGRAGAKGTAHTLFTEDEKHLSGALCNILRGANQ--PVPEELL 531
>UNIPROTKB|O05855 [details] [associations]
symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
Uniprot:O05855
Length = 527
Score = 180 (68.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 74/302 (24%), Positives = 129/302 (42%)
Query: 32 LVVMATGSGKSLCYQLPP-LVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDS 90
LVV+ T + LC Q+ L T L P D ++++R G +
Sbjct: 88 LVVVPT---RELCLQVTDDLATAGKYLTAGP----DTDDAAAVRRRLSVVSIYGGRPYEP 140
Query: 91 SVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGH--DFRLE 148
++ G ++ TP + ++ + L G+ + +DEA + + G D
Sbjct: 141 QIEA-LRAGA-DVVVGTPGR--LLDLCQQGHLQLGGLSVLVLDEADEMLDLGFLPDIERI 196
Query: 149 YKQLDKLRTFLL---GVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVK 205
+Q+ R +L +P +T T VR ++ + P+ + + Y
Sbjct: 197 LRQIPADRQSMLFSATMPDPIITLARTFMVRP---THIRAEAPHSSAVHDATEQFVYRAH 253
Query: 206 VINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSK 265
+++ ELV +L++ G+ +++ T + ++++ L + G G HG +G
Sbjct: 254 ALDKV-----ELVSRVLQA-RDRGATMIFTRTKRTAQKVADELTERGFAVGAVHGDLGQL 307
Query: 266 AREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIA 325
ARE+A + F I V+VAT GID DV HVI+Y CP+ + Y GR GR G
Sbjct: 308 AREKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRT 367
Query: 326 SV 327
V
Sbjct: 368 GV 369
Score = 38 (18.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 15 RPY--QKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL 50
RP+ Q+ + ++ D + TG GK+ + +P L
Sbjct: 32 RPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLL 69
>POMBASE|SPCC63.11 [details] [associations]
symbol:prp28 "U5 snRNP-associated protein Prp28
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC63.11
GO:GO:0005524 GO:GO:0005737 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0000354 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE OrthoDB:EOG4KPXK0 PIR:T41512 RefSeq:NP_587984.1
ProteinModelPortal:Q9Y7T7 STRING:Q9Y7T7 EnsemblFungi:SPCC63.11.1
GeneID:2538728 KEGG:spo:SPCC63.11 NextBio:20799913 Uniprot:Q9Y7T7
Length = 662
Score = 158 (60.7 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 38/106 (35%), Positives = 56/106 (52%)
Query: 218 VQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRD 277
V+EIL+S + II++ +++E I+K L +G A T HG + RE A
Sbjct: 506 VEEILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNK 565
Query: 278 EIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
++VAT G GID P+V V++Y K++E Y GR GR G
Sbjct: 566 TADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAG 611
Score = 65 (27.9 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV 51
M+ LKK Y Q+ I +++++D + + TGSGK+ + +P ++
Sbjct: 260 MLKVLKKV-NYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLII 309
>UNIPROTKB|J3KRM6 [details] [associations]
symbol:RECQL5 "ATP-dependent DNA helicase Q5" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 Pfam:PF00271
PROSITE:PS51194 GO:GO:0005524 GO:GO:0003676 GO:GO:0004386
EMBL:AC087749 HGNC:HGNC:9950 ChiTaRS:RECQL5 Ensembl:ENST00000582464
Uniprot:J3KRM6
Length = 118
Score = 154 (59.3 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 28/49 (57%), Positives = 36/49 (73%)
Query: 288 FGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336
FGMG+DK +VR V H+ K++ YYQESGR GRDG S C LYY+R++
Sbjct: 2 FGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRND 50
>WB|WBGene00002083 [details] [associations]
symbol:inf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0040011
GO:GO:0000003 GO:GO:0019915 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:FO081266 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ
EMBL:Z12116 PIR:S26281 RefSeq:NP_001022623.1 RefSeq:NP_001022624.1
UniGene:Cel.6803 ProteinModelPortal:P27639 SMR:P27639
DIP:DIP-27102N IntAct:P27639 MINT:MINT-1112147 STRING:P27639
PaxDb:P27639 PRIDE:P27639 EnsemblMetazoa:F57B9.6a.1
EnsemblMetazoa:F57B9.6a.2 GeneID:175966 KEGG:cel:CELE_F57B9.6
UCSC:F57B9.6a.1 CTD:175966 WormBase:F57B9.6a WormBase:F57B9.6b
InParanoid:P27639 NextBio:890522 Uniprot:P27639
Length = 402
Score = 174 (66.3 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 87/353 (24%), Positives = 152/353 (43%)
Query: 5 LKKYFGYSVFRP--YQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL--VTGKT----A 56
L+ +G+ +P QK I +D + +G+GK+ + + L + + A
Sbjct: 41 LRGIYGFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRIDHEDPHVQA 100
Query: 57 LVVSPLISLMQD--QVMSLKQRGINAEFL----GSAQTDSSVQTKAETGYFQLLFMTPEK 110
LV++P L Q +VMS +N L G++ D Q K E G ++ TP +
Sbjct: 101 LVMAPTRELAQQIQKVMSALGEYLNVNILPCIGGTSVRDD--QRKLEAG-IHVVVGTPGR 157
Query: 111 ACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTAT 170
+ + + L + + +F +DEA + G F+ + ++ R+ V V L+AT
Sbjct: 158 --VGDMINRNALDTSRIKMFVLDEADEMLSRG--FKDQIYEV--FRSMPQDVQVVLLSAT 211
Query: 171 ATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVK--VIN--RGQSFVDELVQEILKSVA 226
+V +D+ N ++NP + D L G++ IN + + D L L +V
Sbjct: 212 MPSEV-LDVTNRF-MRNPIRILVKKDELTL-EGIRQFYINVQKDEWKFDCLCD--LYNVV 266
Query: 227 GAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM 286
+++C T + V+ +++ + + HG M R+ R F RV++ T
Sbjct: 267 NVTQAVIFCNTRRKVDTLTEKMTENQFTVSCLHGDMDQAERDTIMREFRSGSSRVLITTD 326
Query: 287 AFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAK 339
GID V VI+Y P E+Y GR GR G V + + N A+
Sbjct: 327 ILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGVA-INFVTENDAR 378
>SGD|S000002428 [details] [associations]
symbol:FAL1 "Nucleolar protein required for maturation of 18S
rRNA" species:4932 "Saccharomyces cerevisiae" [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0097078 "FAl1-SGD1 complex" evidence=IPI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002428 GO:GO:0005524
GO:GO:0005730 EMBL:BK006938 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 EMBL:X95966
EMBL:Z49770 GeneTree:ENSGT00680000100003 GO:GO:0000462 KO:K13025
OrthoDB:EOG4HTD1W EMBL:Z74317 EMBL:AY723767 PIR:S54644
RefSeq:NP_010304.3 RefSeq:NP_010309.3 ProteinModelPortal:Q12099
SMR:Q12099 DIP:DIP-4516N IntAct:Q12099 MINT:MINT-503789
STRING:Q12099 PaxDb:Q12099 PeptideAtlas:Q12099 EnsemblFungi:YDR021W
GeneID:851584 GeneID:851590 KEGG:sce:YDR021W KEGG:sce:YDR026C
CYGD:YDR021w KO:K09424 OMA:IFGKQPF NextBio:969055
Genevestigator:Q12099 GermOnline:YDR021W GO:GO:0097078
Uniprot:Q12099
Length = 399
Score = 173 (66.0 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 81/347 (23%), Positives = 149/347 (42%)
Query: 9 FGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL----VTGKT--ALVVSPL 62
+G+ Q I +II +D + +G+GK+ + + L + K AL++SP
Sbjct: 41 YGFEAPSSIQSRAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPT 100
Query: 63 ISLMQDQVMSLKQRG----INAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
L +K G +NA + +T K + Q + TP + ++ +
Sbjct: 101 RELASQIGQVVKNLGDYMNVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGR--VLDMIK 158
Query: 119 WSKLLKAGVCLFAVDEA-HCISEWGHDFRLEYKQ--LDKLRTFLLGVPFVALTATATEKV 175
L V + +DEA +SE L +KQ D V ++AT + +
Sbjct: 159 KQMLQTRNVQMLVLDEADELLSE-----TLGFKQQIYDIFAKLPKNCQVVVVSATMNKDI 213
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVK--VINRG-QSFVDELVQEILKSVAGAGSII 232
+++ + +P + D +L G+K V+N + + + + +I S+ +
Sbjct: 214 -LEVTRKF-MNDPVKILVKRDEISL-EGIKQYVVNVDKEEWKFDTLCDIYDSLT-ITQCV 269
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
++C T K V+ +S+ L Q + HG M + R++ F RV+++T + GI
Sbjct: 270 IFCNTKKKVDWLSQRLIQSNFAVVSMHGDMKQEERDKVMNDFRTGHSRVLISTDVWARGI 329
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAK 339
D V VI+Y P+ +E+Y GR GR G V + +++ AK
Sbjct: 330 DVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGVAINFITKADLAK 376
>UNIPROTKB|E9PIF2 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 HGNC:HGNC:2735 ChiTaRS:DDX10 EMBL:AP002453
EMBL:AP003027 EMBL:AP003387 IPI:IPI00982941
ProteinModelPortal:E9PIF2 SMR:E9PIF2 Ensembl:ENST00000526794
UCSC:uc001pkl.1 ArrayExpress:E9PIF2 Bgee:E9PIF2 Uniprot:E9PIF2
Length = 835
Score = 178 (67.7 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 89/337 (26%), Positives = 140/337 (41%)
Query: 11 YSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL----------VTGKTALVVS 60
Y + QK I ++ +D L TGSGK+L + +P L G L++S
Sbjct: 89 YRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIIS 148
Query: 61 PLISLMQDQVMSLKQRGINAEF-LGSAQTDSSVQTKAET-GYFQLLFMTPEKACII---P 115
P L L++ G N +F G ++ +AE +L TP +
Sbjct: 149 PTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDET 208
Query: 116 ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLE--YKQLDKLRTFLLGVPFVALTATATE 173
+SF + L+ + +DEA I + G + + L K R LL +AT T+
Sbjct: 209 VSFHATDLQ----MLVLDEADRILDMGFADTMNAVIENLPKKRQTLL------FSATQTK 258
Query: 174 KVRIDIINSLKLKNP-YVTIASFDRKNLFYGVKVINRGQSFVDELVQEI------LKSVA 226
V+ D+ L LKNP YV + + Y V EL Q+I L+S
Sbjct: 259 SVK-DLAR-LSLKNPEYVWV----HEKAKYSTPATLEQNYIVCELQQKISVLYSFLRSHL 312
Query: 227 GAGSIIVYCMTIKDVEEISKALKQL--GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVA 284
SI+ + + K+V+ + + +L GV HG+ R E + F+R V+ A
Sbjct: 313 KKKSIVFFS-SCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRAAVLFA 371
Query: 285 TMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGR 321
T G+D P V V+ + CP+ +Y +GR R
Sbjct: 372 TDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTAR 408
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 177 (67.4 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 79/354 (22%), Positives = 151/354 (42%)
Query: 34 VMATGSGKSLCYQLPPLV-----------TGKTALVVSPLISLMQDQVMSLKQRGI---- 78
+ TGSGK+L Y LP +V G ALV++P L Q + G
Sbjct: 324 IAKTGSGKTLGYILPAIVHINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYV 383
Query: 79 -NAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFAV-DEAH 136
N G A ++ + G +++ TP + I +S S LK C + V DEA
Sbjct: 384 RNTCVFGGAPKGGQMRD-LQRGC-EIVIATPGRL-IDFLSAGSTNLKR--CTYLVLDEAD 438
Query: 137 CISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDII-NSLKLKNPYVTIASF 195
+ + G + ++ K + ++R + + A +++ D + N +++ + +++
Sbjct: 439 RMLDMGFEPQIR-KIVSQIRPDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSA- 496
Query: 196 DRKNLFYGVKVINR--GQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGV 253
N+ V V + + + L+ +I + G II++ T + V+ + + ++ GV
Sbjct: 497 -NHNIRQVVDVCDEFSKEEKLKTLLSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGV 555
Query: 254 KAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYY 313
+ G HG R+ R F + ++VAT G+D +++VI++ P+ E Y
Sbjct: 556 RCGAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYI 615
Query: 314 QESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQR-TAIMESLLAAQRY 366
GR GR + ++ ++N + + NQ +E+L RY
Sbjct: 616 HRIGRTGRSNTKGTSFAFFTKNNAKQAKALVDVLREANQEINPALENLARNSRY 669
>UNIPROTKB|E2RMU5 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0033391 "chromatoid body" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0007283
GO:GO:0003676 GO:GO:0030317 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:RDAGESN GO:GO:0000237 EMBL:AAEX03001439
Ensembl:ENSCAFT00000011062 Uniprot:E2RMU5
Length = 728
Score = 177 (67.4 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 89/336 (26%), Positives = 143/336 (42%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV----TGKTA--------- 56
GY+ P QK I I+ RD + TGSGK+ + LP L G TA
Sbjct: 308 GYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEP 367
Query: 57 --LVVSPLISLMQDQVMSLKQRG----INAEFL-GSAQTDSSVQTKAETGYFQLLFMTPE 109
++V+P L+ + ++ + A + G Q S++ + G +L TP
Sbjct: 368 ECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGYSIRQIVQ-GC-NILCATPG 425
Query: 110 KACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTA 169
+ ++ I K+ V +DEA + + G F E K+L L
Sbjct: 426 R--LMDIIGKEKIGLRQVKYLVLDEADRMLDMG--FGPEMKKLISCPGMPSKEQRQTLMF 481
Query: 170 TATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVK--VINRGQSFVDELVQEILKSVAG 227
+AT I + LK+ Y+ +A V+ ++ GQ E + EIL+S+ G
Sbjct: 482 SATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKREKLVEILRSI-G 540
Query: 228 AGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA 287
+V+ T K + I+ L Q + + HG + RE+A F + V+VAT
Sbjct: 541 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 600
Query: 288 FGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
G+D +V+HVI++ P T++ Y GR GR G
Sbjct: 601 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCG 636
Score = 141 (54.7 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 39/123 (31%), Positives = 62/123 (50%)
Query: 206 VINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSK 265
++ GQ E + EIL+S+ G +V+ T K + I+ L Q + + HG +
Sbjct: 520 ILQVGQYSKREKLVEILRSI-GDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQR 578
Query: 266 AREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQE---SGRCGRD 322
RE+A F + V+VAT G+D +V+HVI++ P T++ Y +GRCG
Sbjct: 579 EREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNT 638
Query: 323 GIA 325
G A
Sbjct: 639 GRA 641
>UNIPROTKB|Q13206 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=TAS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CH471065
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
HOGENOM:HOG000268801 CTD:1662 HOVERGEN:HBG102756 OrthoDB:EOG4BK536
EMBL:U28042 EMBL:AB040537 EMBL:AK315216 EMBL:BC091521 EMBL:BC093654
EMBL:BC093656 IPI:IPI00297900 RefSeq:NP_004389.2 UniGene:Hs.591931
PDB:2PL3 PDBsum:2PL3 ProteinModelPortal:Q13206 SMR:Q13206
IntAct:Q13206 STRING:Q13206 PhosphoSite:Q13206 DMDM:76803554
SWISS-2DPAGE:Q13206 PaxDb:Q13206 PeptideAtlas:Q13206 PRIDE:Q13206
Ensembl:ENST00000322536 GeneID:1662 KEGG:hsa:1662 UCSC:uc001pkm.3
GeneCards:GC11P108569 HGNC:HGNC:2735 HPA:HPA004691 MIM:601235
neXtProt:NX_Q13206 PharmGKB:PA27200 InParanoid:Q13206 OMA:ADKVIEP
ChiTaRS:DDX10 EvolutionaryTrace:Q13206 GenomeRNAi:1662 NextBio:6838
ArrayExpress:Q13206 Bgee:Q13206 CleanEx:HS_DDX10
Genevestigator:Q13206 GermOnline:ENSG00000178105 Uniprot:Q13206
Length = 875
Score = 178 (67.7 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 89/337 (26%), Positives = 140/337 (41%)
Query: 11 YSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL----------VTGKTALVVS 60
Y + QK I ++ +D L TGSGK+L + +P L G L++S
Sbjct: 89 YRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIIS 148
Query: 61 PLISLMQDQVMSLKQRGINAEF-LGSAQTDSSVQTKAET-GYFQLLFMTPEKACII---P 115
P L L++ G N +F G ++ +AE +L TP +
Sbjct: 149 PTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDET 208
Query: 116 ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLE--YKQLDKLRTFLLGVPFVALTATATE 173
+SF + L+ + +DEA I + G + + L K R LL +AT T+
Sbjct: 209 VSFHATDLQ----MLVLDEADRILDMGFADTMNAVIENLPKKRQTLL------FSATQTK 258
Query: 174 KVRIDIINSLKLKNP-YVTIASFDRKNLFYGVKVINRGQSFVDELVQEI------LKSVA 226
V+ D+ L LKNP YV + + Y V EL Q+I L+S
Sbjct: 259 SVK-DLAR-LSLKNPEYVWV----HEKAKYSTPATLEQNYIVCELQQKISVLYSFLRSHL 312
Query: 227 GAGSIIVYCMTIKDVEEISKALKQL--GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVA 284
SI+ + + K+V+ + + +L GV HG+ R E + F+R V+ A
Sbjct: 313 KKKSIVFFS-SCKEVQYLYRVFCRLRPGVSILALHGRQQQMRRMEVYNEFVRKRAAVLFA 371
Query: 285 TMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGR 321
T G+D P V V+ + CP+ +Y +GR R
Sbjct: 372 TDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTAR 408
>ZFIN|ZDB-GENE-050706-53 [details] [associations]
symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
Uniprot:E7F401
Length = 910
Score = 178 (67.7 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 85/348 (24%), Positives = 148/348 (42%)
Query: 11 YSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV-----------TGKTALVV 59
Y+ P Q + + RD + + TGSGK+ + P LV G A++V
Sbjct: 277 YTQPTPIQCQGVPIALSGRDAIGIAKTGSGKTAAFIWPILVHIMDQKELEPGEGPIAVIV 336
Query: 60 SPLISLMQDQVMSLKQRGINAEFLGSAQT--DSSV--QTKAETGYFQLLFMTPEKACIIP 115
P L Q K+ G A L S S+ Q KA +++ TP + I
Sbjct: 337 CPTRELCQQIHAECKRFG-KAYGLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRL-IDH 394
Query: 116 ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
+ + L+ V DEA + + G ++++ +R + F A EK+
Sbjct: 395 VKKKATSLQR-VTFLVFDEADRMFDMGFEYQVR-SIASHVRPDRQTLLFSATFRKKIEKL 452
Query: 176 RIDI-INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVY 234
DI ++ +++ + A+ D + V+V+ GQ L + +++ + AGS++V+
Sbjct: 453 ARDILVDPIRVVQGDIGEANEDITQI---VEVLQSGQDKWGWLTRRLVEFTS-AGSVLVF 508
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
+ EE++ L Q G G HG M R + F + + V+VAT G+D
Sbjct: 509 VTKKANCEELATNLIQEGYSLGLLHGDMDQSERNKVIADFKKKNLPVLVATDVAARGLDI 568
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCW-LYYARSNFAKGD 341
P +R V++Y + ++++ GR GR G V + L + GD
Sbjct: 569 PSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTTKDTSFAGD 616
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 176 (67.0 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 87/386 (22%), Positives = 166/386 (43%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP--------PLVT 52
++ +KK G+ P Q +++ D + V TG+GK+LCY +P P +
Sbjct: 253 VMENIKKA-GFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSLK 311
Query: 53 GKT----ALVVSPLISL---MQDQVMSLKQRGINAEFL-GSAQTDSSVQTKAETGYFQLL 104
G+ LV++P L ++ + +G+ + + G D ++ + + G ++
Sbjct: 312 GQRNRPGMLVLTPTRELALQVEGECCKYSYKGLRSVCVYGGGNRDEQIE-ELKKGV-DII 369
Query: 105 FMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPF 164
TP + + +S + L + +DEA + + G + ++ LD +R
Sbjct: 370 IATPGRLNDLQMSNFVNL--KNITYLVLDEADKMLDMGFEPQIMKILLD-VRP---DRQT 423
Query: 165 VALTATATEKVRIDIINSLKLKNPYVT-IASFDRKNLFYGVK--VINRGQSFVDELVQEI 221
V +AT V + S LK P + + + D + VK +I + +Q
Sbjct: 424 VMTSATWPHSVH-RLAQSY-LKEPMIVYVGTLDLVAVS-SVKQNIIVTTEEEKWSHMQTF 480
Query: 222 LKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRV 281
L+S++ +IV+ + +S L + + HG + RE+A F ++R+
Sbjct: 481 LQSMSSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRI 540
Query: 282 MVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD 341
++AT G+D DV HV ++ P+ +E Y GR GR G V R+++
Sbjct: 541 LIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVAS 600
Query: 342 FYCGESQTENQRTAIMESLLA-AQRY 366
+ NQ +I E L++ A+R+
Sbjct: 601 ELINILERANQ--SIPEELVSMAERF 624
>ASPGD|ASPL0000051195 [details] [associations]
symbol:AN1634 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 EMBL:BN001307
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000026 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:P09052
HOGENOM:HOG000268796 OMA:PIRNWKE RefSeq:XP_659238.1
ProteinModelPortal:Q5BCU6 EnsemblFungi:CADANIAT00008272
GeneID:2874876 KEGG:ani:AN1634.2 OrthoDB:EOG4KPXK0 Uniprot:Q5BCU6
Length = 782
Score = 153 (58.9 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 52/161 (32%), Positives = 76/161 (47%)
Query: 170 TATEKVRIDIINSLKLKNP-YVTIASFDRK--NLFYGVKVINRGQSFVDELVQEILKSVA 226
TAT ++ I L+ P VTI S + V++I G+ + + EIL S
Sbjct: 561 TATMPTAVERIARKYLRRPAIVTIGSAGEAVDTVEQRVEMI-AGEDKRKKRLGEILSSGD 619
Query: 227 GAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM 286
IIV+ ++ + I++ +KQ G + T HG + RE A V+VAT
Sbjct: 620 FRPPIIVFVNIKRNCDAIAREIKQWGFSSVTLHGSKTQEQREAALASVRNGSTDVLVATD 679
Query: 287 AFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASV 327
G GID PDV VI++ ++ESY GR GR G + V
Sbjct: 680 LAGRGIDVPDVSLVINFNMATSIESYTHRIGRTGRAGKSGV 720
Score = 70 (29.7 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL 50
GY P Q+ I ++ RD + V TGSGK+ + LP L
Sbjct: 365 GYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLL 405
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 173 (66.0 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 80/333 (24%), Positives = 140/333 (42%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP--------PLVTGKT--ALVV 59
GY+ P Q I ++ +D + TG+GK+ + LP P V AL++
Sbjct: 20 GYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAKGPKVRANQVRALIL 79
Query: 60 SP---LISLMQDQVMSLKQRGI---NAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACI 113
+P L + +QD VM L R + +A G + + +Q + +L TP + +
Sbjct: 80 TPTRELAAQIQDNVM-LYGRHLPLKSAVVFGGVKINPQMQRMCKGA--DILVATPGR--L 134
Query: 114 IPISFWSKLLKAGVCLFAVDEAHCISEWG--HDFRLEYKQLDKLRTFLLGVPFVALTATA 171
+ + + + + + +DEA + + G D K L + R LL F A +T
Sbjct: 135 MDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNLL---FSATFSTE 191
Query: 172 TEKVRIDIINS-LKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGS 230
++ ++N+ +++ + + Y V + V +LV+E
Sbjct: 192 IRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLV-KLVKE-----GNWQQ 245
Query: 231 IIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGM 290
++V+ T ++ L + G+ A HG AR A F E+R++VAT
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305
Query: 291 GIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
GID P + V+++ PK E Y GR GR G
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAG 338
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 173 (66.0 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 80/333 (24%), Positives = 140/333 (42%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP--------PLVTGKT--ALVV 59
GY+ P Q I ++ +D + TG+GK+ + LP P V AL++
Sbjct: 20 GYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAKGPKVRANQVRALIL 79
Query: 60 SP---LISLMQDQVMSLKQRGI---NAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACI 113
+P L + +QD VM L R + +A G + + +Q + +L TP + +
Sbjct: 80 TPTRELAAQIQDNVM-LYGRHLPLKSAVVFGGVKINPQMQRMCKGA--DILVATPGR--L 134
Query: 114 IPISFWSKLLKAGVCLFAVDEAHCISEWG--HDFRLEYKQLDKLRTFLLGVPFVALTATA 171
+ + + + + + +DEA + + G D K L + R LL F A +T
Sbjct: 135 MDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKRQNLL---FSATFSTE 191
Query: 172 TEKVRIDIINS-LKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGS 230
++ ++N+ +++ + + Y V + V +LV+E
Sbjct: 192 IRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLV-KLVKE-----GNWQQ 245
Query: 231 IIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGM 290
++V+ T ++ L + G+ A HG AR A F E+R++VAT
Sbjct: 246 VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILVATDIAAR 305
Query: 291 GIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
GID P + V+++ PK E Y GR GR G
Sbjct: 306 GIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAG 338
>UNIPROTKB|D6RDK4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:54514 KO:K13982 RefSeq:NP_001160005.1
UniGene:Hs.223581 GeneID:54514 KEGG:hsa:54514 HGNC:HGNC:18700
GenomeRNAi:54514 NextBio:56900 EMBL:AC016632 IPI:IPI00953956
ProteinModelPortal:D6RDK4 SMR:D6RDK4 PRIDE:D6RDK4
Ensembl:ENST00000514278 UCSC:uc010ivz.3 ArrayExpress:D6RDK4
Bgee:D6RDK4 Uniprot:D6RDK4
Length = 704
Score = 176 (67.0 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 88/336 (26%), Positives = 144/336 (42%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV----TGKTA--------- 56
GY+ P QK I I+ RD + TGSGK+ + LP L G TA
Sbjct: 287 GYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEP 346
Query: 57 --LVVSPLISLMQDQVMSLKQRG----INAEFL-GSAQTDSSVQTKAETGYFQLLFMTPE 109
++V+P L+ + ++ + A + G Q S++ + G +L TP
Sbjct: 347 ECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQ-GC-NILCATPG 404
Query: 110 KACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTA 169
+ ++ I K+ + +DEA + + G F E K+L L
Sbjct: 405 R--LMDIIGKEKIGLKQIKYLVLDEADRMLDMG--FGPEMKKLISCPGMPSKEQRQTLMF 460
Query: 170 TATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVK--VINRGQSFVDELVQEILKSVAG 227
+AT I + + LK+ Y+ +A V+ V+ GQ E + EIL+++ G
Sbjct: 461 SATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVEILRNI-G 519
Query: 228 AGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA 287
+V+ T K + I+ L Q + + HG + RE+A F + V+VAT
Sbjct: 520 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSV 579
Query: 288 FGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
G+D +V+HVI++ P T++ Y GR GR G
Sbjct: 580 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCG 615
Score = 139 (54.0 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 39/123 (31%), Positives = 62/123 (50%)
Query: 206 VINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSK 265
V+ GQ E + EIL+++ G +V+ T K + I+ L Q + + HG +
Sbjct: 499 VLQVGQFSKREKLVEILRNI-GDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQR 557
Query: 266 AREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQE---SGRCGRD 322
RE+A F + V+VAT G+D +V+HVI++ P T++ Y +GRCG
Sbjct: 558 EREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNT 617
Query: 323 GIA 325
G A
Sbjct: 618 GRA 620
>UNIPROTKB|Q9NQI0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007141 "male meiosis I" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0032880 "regulation of protein
localization" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0071546 "pi-body" evidence=ISS] [GO:0071547 "piP-body"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 EMBL:CH471123 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 CTD:54514 KO:K13982
OrthoDB:EOG4W6NVF GO:GO:0071547 EMBL:AY004154 EMBL:AF262962
EMBL:AK292417 EMBL:BC047455 EMBL:BC088362 EMBL:AL137462
IPI:IPI00071483 IPI:IPI00456933 PIR:T46407 RefSeq:NP_001136021.1
RefSeq:NP_001160005.1 RefSeq:NP_077726.1 UniGene:Hs.223581
ProteinModelPortal:Q9NQI0 SMR:Q9NQI0 IntAct:Q9NQI0 STRING:Q9NQI0
PhosphoSite:Q9NQI0 DMDM:20138033 REPRODUCTION-2DPAGE:IPI00456933
PaxDb:Q9NQI0 PRIDE:Q9NQI0 Ensembl:ENST00000353507
Ensembl:ENST00000354991 Ensembl:ENST00000505374 GeneID:54514
KEGG:hsa:54514 UCSC:uc003jqg.4 UCSC:uc003jqh.4
GeneCards:GC05P055069 HGNC:HGNC:18700 HPA:CAB026170 HPA:HPA037763
HPA:HPA037764 MIM:605281 neXtProt:NX_Q9NQI0 PharmGKB:PA38646
InParanoid:Q9NQI0 OMA:RDAGESN PhylomeDB:Q9NQI0 GenomeRNAi:54514
NextBio:56900 ArrayExpress:Q9NQI0 Bgee:Q9NQI0 CleanEx:HS_DDX4
Genevestigator:Q9NQI0 GermOnline:ENSG00000152670 GO:GO:0000237
Uniprot:Q9NQI0
Length = 724
Score = 176 (67.0 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 88/336 (26%), Positives = 144/336 (42%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV----TGKTA--------- 56
GY+ P QK I I+ RD + TGSGK+ + LP L G TA
Sbjct: 307 GYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEP 366
Query: 57 --LVVSPLISLMQDQVMSLKQRG----INAEFL-GSAQTDSSVQTKAETGYFQLLFMTPE 109
++V+P L+ + ++ + A + G Q S++ + G +L TP
Sbjct: 367 ECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQ-GC-NILCATPG 424
Query: 110 KACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTA 169
+ ++ I K+ + +DEA + + G F E K+L L
Sbjct: 425 R--LMDIIGKEKIGLKQIKYLVLDEADRMLDMG--FGPEMKKLISCPGMPSKEQRQTLMF 480
Query: 170 TATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVK--VINRGQSFVDELVQEILKSVAG 227
+AT I + + LK+ Y+ +A V+ V+ GQ E + EIL+++ G
Sbjct: 481 SATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVEILRNI-G 539
Query: 228 AGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA 287
+V+ T K + I+ L Q + + HG + RE+A F + V+VAT
Sbjct: 540 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSV 599
Query: 288 FGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
G+D +V+HVI++ P T++ Y GR GR G
Sbjct: 600 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCG 635
Score = 139 (54.0 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 39/123 (31%), Positives = 62/123 (50%)
Query: 206 VINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSK 265
V+ GQ E + EIL+++ G +V+ T K + I+ L Q + + HG +
Sbjct: 519 VLQVGQFSKREKLVEILRNI-GDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQR 577
Query: 266 AREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQE---SGRCGRD 322
RE+A F + V+VAT G+D +V+HVI++ P T++ Y +GRCG
Sbjct: 578 EREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNT 637
Query: 323 GIA 325
G A
Sbjct: 638 GRA 640
>UNIPROTKB|Q4R5S7 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9541 "Macaca fascicularis" [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0071546 "pi-body" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AB169466
ProteinModelPortal:Q4R5S7 SMR:Q4R5S7 Uniprot:Q4R5S7
Length = 725
Score = 176 (67.0 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 88/336 (26%), Positives = 144/336 (42%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV----TGKTA--------- 56
GY+ P QK I I+ RD + TGSGK+ + LP L G TA
Sbjct: 308 GYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASCFKELQEP 367
Query: 57 --LVVSPLISLMQDQVMSLKQRG----INAEFL-GSAQTDSSVQTKAETGYFQLLFMTPE 109
++V+P L+ + ++ + A + G Q S++ + G +L TP
Sbjct: 368 ECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQ-GC-NILCATPG 425
Query: 110 KACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTA 169
+ ++ I K+ + +DEA + + G F E K+L L
Sbjct: 426 R--LMDIIGKEKIGLKQIKYLVLDEADRMLDMG--FGPEMKKLISCPGMPSKEQRQTLMF 481
Query: 170 TATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVK--VINRGQSFVDELVQEILKSVAG 227
+AT I + + LK+ Y+ +A V+ V+ GQ E + EIL+++ G
Sbjct: 482 SATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQTVLQVGQFSKREKLVEILRNI-G 540
Query: 228 AGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA 287
+V+ T K + I+ L Q + + HG + RE+A F + V+VAT
Sbjct: 541 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 600
Query: 288 FGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
G+D +V+HVI++ P T++ Y GR GR G
Sbjct: 601 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCG 636
Score = 139 (54.0 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 39/123 (31%), Positives = 62/123 (50%)
Query: 206 VINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSK 265
V+ GQ E + EIL+++ G +V+ T K + I+ L Q + + HG +
Sbjct: 520 VLQVGQFSKREKLVEILRNI-GDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQR 578
Query: 266 AREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQE---SGRCGRD 322
RE+A F + V+VAT G+D +V+HVI++ P T++ Y +GRCG
Sbjct: 579 EREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNT 638
Query: 323 GIA 325
G A
Sbjct: 639 GRA 641
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 174 (66.3 bits), Expect = 3.6e-10, P = 3.6e-10
Identities = 82/328 (25%), Positives = 134/328 (40%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPP----LVT--GKT-ALVVSPL 62
GY P Q I I+E D + + TG+GK+ Y LP L T G+ LV++P
Sbjct: 20 GYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPVIQKMLSTPRGRVRTLVLAPT 79
Query: 63 ISL---MQDQVMSLKQRGINAE--FLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPIS 117
L + + SL QR E G D ++ + +G ++ P + ++
Sbjct: 80 RELACQIAESFRSLGQRARIRECSIYGGVNMDQQIR-RLRSGV-DVVVACPGR--LLD-H 134
Query: 118 FWSKLLK-AGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
W + GV +DEA + + G F+ + + + K L P L +AT
Sbjct: 135 IWRGTIDICGVETLIIDEADRMFDMG--FQPDIQSILKC----LVQPHQTLLFSATMPPE 188
Query: 177 IDIINSLKLKNPYVTI---ASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIV 233
+ + NP VTI ++ + V + Q L+ EILK+ S+++
Sbjct: 189 VRKLTLETQTNP-VTIQIGTQAPASSVSHSVYPVKNHQK--TPLLIEILKTTE-TKSVLI 244
Query: 234 YCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293
+ T E ++ + + G + G + R F R +++VAT G+D
Sbjct: 245 FARTKYGAENLADEISRAGFTTASLQGNLSQNRRHAVMEGFRRGNFKILVATDIAARGLD 304
Query: 294 KPDVRHVIHYGCPKTLESYYQESGRCGR 321
+ HVI+Y P T E Y GR GR
Sbjct: 305 IDHISHVINYDMPDTPEDYTHRIGRTGR 332
>UNIPROTKB|Q9NR30 [details] [associations]
symbol:DDX21 "Nucleolar RNA helicase 2" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0009615 "response
to virus" evidence=IEA] [GO:0043330 "response to exogenous dsRNA"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 EMBL:CH471083 GO:GO:0009615 GO:GO:0003725
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0043330 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:U41387 EMBL:AF261903 EMBL:AF261917 EMBL:AF261904 EMBL:AF261905
EMBL:AF261906 EMBL:AF261907 EMBL:AF261908 EMBL:AF261909
EMBL:AF261910 EMBL:AF261911 EMBL:AF261912 EMBL:AF261913
EMBL:AF261914 EMBL:AF261915 EMBL:AF261916 EMBL:AK315585
EMBL:CR749598 EMBL:AL359844 EMBL:BC008071 IPI:IPI00015953
IPI:IPI00477179 PIR:PC6010 RefSeq:NP_001243839.1 RefSeq:NP_004719.2
UniGene:Hs.223141 ProteinModelPortal:Q9NR30 SMR:Q9NR30
IntAct:Q9NR30 MINT:MINT-231639 STRING:Q9NR30 PhosphoSite:Q9NR30
DMDM:76803555 SWISS-2DPAGE:Q9NR30 PaxDb:Q9NR30 PeptideAtlas:Q9NR30
PRIDE:Q9NR30 DNASU:9188 Ensembl:ENST00000354185 GeneID:9188
KEGG:hsa:9188 UCSC:uc001jov.1 CTD:9188 GeneCards:GC10P070715
H-InvDB:HIX0008880 HGNC:HGNC:2744 HPA:HPA036592 MIM:606357
neXtProt:NX_Q9NR30 PharmGKB:PA27210 HOGENOM:HOG000268805
HOVERGEN:HBG051331 InParanoid:Q9NR30 OMA:EILCVAY OrthoDB:EOG46143T
PhylomeDB:Q9NR30 ChiTaRS:DDX21 GenomeRNAi:9188 NextBio:34453
ArrayExpress:Q9NR30 Bgee:Q9NR30 CleanEx:HS_DDX21
Genevestigator:Q9NR30 GermOnline:ENSG00000165732 Uniprot:Q9NR30
Length = 783
Score = 169 (64.5 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 42/119 (35%), Positives = 64/119 (53%)
Query: 217 LVQEILKSVAG-AGSIIVYCMTIKDVEEISK--ALKQLGVKAGTYHGQMGSKAREEAHRL 273
++ ++++ +G G I++C T K+ +E+S+ A+KQ A + HG + K RE +
Sbjct: 426 VIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQ---DAQSLHGDIPQKQREITLKG 482
Query: 274 FIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYY 332
F V+VAT G+D P+V VI PK +ESY SGR GR G VC +Y
Sbjct: 483 FRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFY 541
Score = 51 (23.0 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP 48
L K G + P Q + +D + TG+GK+ + +P
Sbjct: 200 LLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIP 243
Score = 43 (20.2 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 18/50 (36%), Positives = 22/50 (44%)
Query: 39 SGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQT 88
SGK L Q TGKT PLI + ++ K RG + L A T
Sbjct: 222 SGKDLIAQART-GTGKTFSFAIPLIEKLHGELQDRK-RGRAPQVLVLAPT 269
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 171 (65.3 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 84/342 (24%), Positives = 149/342 (43%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP----------PLV-TGKT--- 55
GY P Q+ I I++ RD +V TG+GK+ + LP PL + K
Sbjct: 29 GYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSRPPLQRSAKPVIR 88
Query: 56 ALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQ----LLFMTPEKA 111
AL+++P L ++ G L + V K + + + +L TP +
Sbjct: 89 ALILTPTRELAVQVFECVRAYGKYLP-LKATVVHGGVSIKPQINHLRRGVDILVATPGR- 146
Query: 112 CIIPISFWSKLLKAGVCLFAVDEAHCISEWGH--DFRLEYKQLDKLRTFLLGVPFVALTA 169
++ + L + V F +DEA + + G D R K L + R LL +A
Sbjct: 147 -LLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESRQNLL------FSA 199
Query: 170 TATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAG 229
T +++++ ++ + L L +P + R+N ++ + + +E+L + G+
Sbjct: 200 TFSKEIK-ELTDKL-LHSP--ALIEVARRNTA-AARITHVVHPVDRQRKRELLSFMIGSK 254
Query: 230 S---IIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM 286
+ ++V+ T +S+ L+ G+ + HG AR A F + +IRV+VAT
Sbjct: 255 NWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVLVATD 314
Query: 287 AFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGR---DGIA 325
G+D + HVI++ P + Y GR GR DG+A
Sbjct: 315 VAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVA 356
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 171 (65.3 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 84/342 (24%), Positives = 149/342 (43%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP----------PLV-TGKT--- 55
GY P Q+ I I++ RD +V TG+GK+ + LP PL + K
Sbjct: 29 GYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVSRPPLQRSAKPVIR 88
Query: 56 ALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQ----LLFMTPEKA 111
AL+++P L ++ G L + V K + + + +L TP +
Sbjct: 89 ALILTPTRELAVQVFECVRAYGKYLP-LKATVVHGGVSIKPQINHLRRGVDILVATPGR- 146
Query: 112 CIIPISFWSKLLKAGVCLFAVDEAHCISEWGH--DFRLEYKQLDKLRTFLLGVPFVALTA 169
++ + L + V F +DEA + + G D R K L + R LL +A
Sbjct: 147 -LLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESRQNLL------FSA 199
Query: 170 TATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAG 229
T +++++ ++ + L L +P + R+N ++ + + +E+L + G+
Sbjct: 200 TFSKEIK-ELTDKL-LHSP--ALIEVARRNTA-AARITHVVHPVDRQRKRELLSFMIGSK 254
Query: 230 S---IIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM 286
+ ++V+ T +S+ L+ G+ + HG AR A F + +IRV+VAT
Sbjct: 255 NWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIRVLVATD 314
Query: 287 AFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGR---DGIA 325
G+D + HVI++ P + Y GR GR DG+A
Sbjct: 315 VAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVA 356
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 175 (66.7 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 82/338 (24%), Positives = 143/338 (42%)
Query: 16 PYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV-----------TGKTALVVSPLIS 64
P Q ++ RD + + TGSGK+L + LP +V G LV++P
Sbjct: 409 PIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQPVLREDDGPIVLVLAPTRE 468
Query: 65 L-MQDQVMSLKQRGI----NAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
L +Q Q + K G N G A + V + G +++ TP + +I I
Sbjct: 469 LALQIQEETNKFGGTSQISNTCVYGGASKHTQVAA-LKKGV-EIVIATPGR--LIDILES 524
Query: 120 SKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDI 179
K V +DEA + + G + ++ K + ++R + F +AT ++V+ +
Sbjct: 525 GKTNLRRVTYLVLDEADRMLDMGFEPQIR-KIISQIRPDRQTLMF---SATWPKEVQA-L 579
Query: 180 INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVD-ELVQEILKSVAGAGSIIVYCMTI 238
+ + V I S + +++ Q F E + L SV +IV+ T
Sbjct: 580 AHDFLTDHIQVHIGSTEITANHNVRQIVEVCQDFEKKERMLSFLGSVGRDEKVIVFAETR 639
Query: 239 KDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
K V+++ + L+ G K+ HG R+ F + +M+AT G+D D++
Sbjct: 640 KGVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMIATDVASRGLDIKDIK 699
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336
+V++Y P T+E Y GR R G + V + N
Sbjct: 700 YVVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDN 737
>MGI|MGI:102670 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0007141 "male meiosis I" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032880 "regulation of protein localization" evidence=IMP]
[GO:0033391 "chromatoid body" evidence=ISO;IDA] [GO:0044464 "cell
part" evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0071546 "pi-body" evidence=IDA] [GO:0071547
"piP-body" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:102670 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0048471 GO:GO:0032880
GO:GO:0007283 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
HOVERGEN:HBG015893 CTD:54514 KO:K13982 GO:GO:0071547 GO:GO:0000237
EMBL:AK014844 EMBL:D14859 IPI:IPI00121394 RefSeq:NP_034159.1
UniGene:Mm.12818 ProteinModelPortal:Q61496 SMR:Q61496 STRING:Q61496
PhosphoSite:Q61496 REPRODUCTION-2DPAGE:IPI00121394
REPRODUCTION-2DPAGE:Q61496 PaxDb:Q61496 PRIDE:Q61496
Ensembl:ENSMUST00000075748 GeneID:13206 KEGG:mmu:13206
UCSC:uc007rwm.2 ChiTaRS:DDX4 NextBio:283368 Bgee:Q61496
CleanEx:MM_DDX4 Genevestigator:Q61496 GermOnline:ENSMUSG00000021758
Uniprot:Q61496
Length = 702
Score = 174 (66.3 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 88/336 (26%), Positives = 143/336 (42%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV----TGKTA--------- 56
GY+ P QK I ++ RD + TGSGK+ + LP L G TA
Sbjct: 280 GYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEP 339
Query: 57 --LVVSPLISLMQDQVMSLKQRG----INAEFL-GSAQTDSSVQTKAETGYFQLLFMTPE 109
++V+P L+ + ++ + A + G Q SV+ + G +L TP
Sbjct: 340 ECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSVRQIVQ-GC-NILCATPG 397
Query: 110 KACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTA 169
+ ++ I K+ V +DEA + + G F E K+L L
Sbjct: 398 R--LMDIIGKEKIGLKQVKYLVLDEADRMLDMG--FGPEMKKLISCPGMPSKEQRQTLLF 453
Query: 170 TATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVK--VINRGQSFVDELVQEILKSVAG 227
+AT I + LK+ Y+ +A V+ ++ GQ E + EIL+++ G
Sbjct: 454 SATFPEEIQRLAGDFLKSSYLFVAVGQVGGACRDVQQTILQVGQYSKREKLVEILRNI-G 512
Query: 228 AGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA 287
+V+ T K + I+ L Q + + HG + RE+A F + V+VAT
Sbjct: 513 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 572
Query: 288 FGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
G+D +V+HVI++ P T++ Y GR GR G
Sbjct: 573 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCG 608
Score = 138 (53.6 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 38/123 (30%), Positives = 62/123 (50%)
Query: 206 VINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSK 265
++ GQ E + EIL+++ G +V+ T K + I+ L Q + + HG +
Sbjct: 492 ILQVGQYSKREKLVEILRNI-GDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQR 550
Query: 266 AREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQE---SGRCGRD 322
RE+A F + V+VAT G+D +V+HVI++ P T++ Y +GRCG
Sbjct: 551 EREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNT 610
Query: 323 GIA 325
G A
Sbjct: 611 GRA 613
>UNIPROTKB|Q08DT0 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
OrthoDB:EOG4BK536 OMA:ADKVIEP EMBL:DAAA02040206 EMBL:DAAA02040207
EMBL:DAAA02040208 EMBL:DAAA02040209 EMBL:DAAA02040210
EMBL:DAAA02040211 EMBL:DAAA02040212 EMBL:DAAA02040213
EMBL:DAAA02040214 EMBL:DAAA02040215 EMBL:DAAA02040216
EMBL:DAAA02040217 EMBL:BC123579 IPI:IPI00717487
RefSeq:NP_001070349.1 UniGene:Bt.63620 SMR:Q08DT0
Ensembl:ENSBTAT00000003086 GeneID:528483 KEGG:bta:528483
InParanoid:Q08DT0 NextBio:20874836 Uniprot:Q08DT0
Length = 876
Score = 175 (66.7 bits), Expect = 5.5e-10, P = 5.5e-10
Identities = 89/337 (26%), Positives = 139/337 (41%)
Query: 11 YSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL----------VTGKTALVVS 60
Y + QK I ++ +D L TGSGK+L + +P L G L++S
Sbjct: 89 YRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSADGLGVLIIS 148
Query: 61 PLISLMQDQVMSLKQRGINAEF-LGSAQTDSSVQTKAET-GYFQLLFMTPEKACII---P 115
P L L++ G N +F G ++ +AE +L TP +
Sbjct: 149 PTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDET 208
Query: 116 ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLE--YKQLDKLRTFLLGVPFVALTATATE 173
I F + L+ + +DEA I + G + + L K R LL +AT T+
Sbjct: 209 ICFHATNLQ----MLVLDEADRILDMGFADTMNAIIENLPKKRQTLL------FSATQTK 258
Query: 174 KVRIDIINSLKLKNP-YVTIASFDRKNLFYGVKVINRGQSFVDELVQEI------LKSVA 226
V+ D+ L LKNP YV + + Y V EL Q+I L+S
Sbjct: 259 SVK-DLAR-LSLKNPEYVWV----HEKAKYSTPATLEQNYIVCELQQKISVLYSFLRSHL 312
Query: 227 GAGSIIVYCMTIKDVEEISKALKQL--GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVA 284
SI+ + + K+V+ + + +L GV HG+ R E + F+R V+ A
Sbjct: 313 KKKSIVFFS-SCKEVQYLYRVFCRLRPGVSLLALHGRQQQMRRMEVYNEFVRKRAAVLFA 371
Query: 285 TMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGR 321
T G+D P V V+ + CP+ +Y +GR R
Sbjct: 372 TDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTAR 408
>UNIPROTKB|I3LHW0 [details] [associations]
symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
Uniprot:I3LHW0
Length = 621
Score = 173 (66.0 bits), Expect = 5.5e-10, P = 5.5e-10
Identities = 80/342 (23%), Positives = 150/342 (43%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP--------PLVT 52
++ ++KK G+ P Q +++ D + + TG+GK+L Y +P P+
Sbjct: 226 LMKSIKKA-GFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQPVSR 284
Query: 53 GKT----ALVVSPLISL-MQ--DQVMSLKQRGINAEFL-GSAQTDSSVQTKAETGYFQLL 104
GK LV++P L +Q + +G+ + + G +Q + G ++
Sbjct: 285 GKRNGPGMLVLTPTRELALQVGAECSKYSYKGLKSVCIYGGGNRKGQIQDIMK-GV-DII 342
Query: 105 FMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPF 164
TP + + ++ + L + +DEA + + G + ++ LD +R
Sbjct: 343 IATPGRLNDLQMNNFVNL--RSITYLVLDEADKMLDLGFEHQIMKILLD-VRP---DRQT 396
Query: 165 VALTATATEKVRIDIINSLKLKNPY-VTIASFDRKNLFYGVK--VINRGQSFVDELVQEI 221
+ +AT + +R + +S LK P V + + D + VK +I + L QE
Sbjct: 397 IMTSATWPDTIR-QLAHSY-LKEPMLVYVGTLDLVAVDT-VKQNIIITTEEEKRSLFQEF 453
Query: 222 LKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRV 281
L+S++ +IV+ +++S L G+ + HG RE A F ++++
Sbjct: 454 LQSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKI 513
Query: 282 MVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
++AT G+D DV HV +Y P+ +E Y GR GR G
Sbjct: 514 LIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAG 555
>UNIPROTKB|E2QTL6 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043330 "response to exogenous dsRNA"
evidence=IEA] [GO:0009615 "response to virus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003725 "double-stranded
RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0009615
GO:GO:0003725 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0043330 InterPro:IPR014014 PROSITE:PS51195
CTD:9188 RefSeq:XP_851746.2 ProteinModelPortal:E2QTL6
Ensembl:ENSCAFT00000021901 GeneID:476891 KEGG:cfa:476891
NextBio:20852481 Uniprot:E2QTL6
Length = 785
Score = 165 (63.1 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 38/117 (32%), Positives = 63/117 (53%)
Query: 217 LVQEILKSVAGA-GSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFI 275
++ ++++ +G G I++C T K+ +E+S+ + + A + HG + K RE + F
Sbjct: 428 VIGDVIRVYSGFHGRTIIFCETKKEAQELSQNVS-IRQDAQSLHGDIPQKQREITLKGFR 486
Query: 276 RDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYY 332
+ V+VAT G+D P+V VI PK +ESY SGR GR G +C +Y
Sbjct: 487 NGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICICFY 543
Score = 54 (24.1 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV 51
L K G + P Q + +D + TG+GK+ + +P +V
Sbjct: 202 LLKARGVTFLFPIQAKTFYHVYSGKDLIAQARTGTGKTFSFAIPLIV 248
Score = 46 (21.3 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 19/50 (38%), Positives = 23/50 (46%)
Query: 39 SGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQT 88
SGK L Q TGKT PLI +Q ++ K RG + L A T
Sbjct: 224 SGKDLIAQART-GTGKTFSFAIPLIVKLQGELQDRK-RGRAPQVLVLAPT 271
>UNIPROTKB|F6V8G4 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 OMA:QCEPPRE EMBL:AAEX03002786
Ensembl:ENSCAFT00000021901 Uniprot:F6V8G4
Length = 786
Score = 165 (63.1 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 38/117 (32%), Positives = 63/117 (53%)
Query: 217 LVQEILKSVAGA-GSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFI 275
++ ++++ +G G I++C T K+ +E+S+ + + A + HG + K RE + F
Sbjct: 428 VIGDVIRVYSGFHGRTIIFCETKKEAQELSQNVS-IRQDAQSLHGDIPQKQREITLKGFR 486
Query: 276 RDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYY 332
+ V+VAT G+D P+V VI PK +ESY SGR GR G +C +Y
Sbjct: 487 NGDFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGICICFY 543
Score = 54 (24.1 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV 51
L K G + P Q + +D + TG+GK+ + +P +V
Sbjct: 202 LLKARGVTFLFPIQAKTFYHVYSGKDLIAQARTGTGKTFSFAIPLIV 248
Score = 46 (21.3 bits), Expect = 3.8e-09, Sum P(2) = 3.8e-09
Identities = 19/50 (38%), Positives = 23/50 (46%)
Query: 39 SGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQT 88
SGK L Q TGKT PLI +Q ++ K RG + L A T
Sbjct: 224 SGKDLIAQART-GTGKTFSFAIPLIVKLQGELQDRK-RGRAPQVLVLAPT 271
>UNIPROTKB|F1SQ03 [details] [associations]
symbol:LOC100524536 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
GeneID:100524536 Uniprot:F1SQ03
Length = 630
Score = 173 (66.0 bits), Expect = 5.7e-10, P = 5.7e-10
Identities = 80/342 (23%), Positives = 150/342 (43%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP--------PLVT 52
++ ++KK G+ P Q +++ D + + TG+GK+L Y +P P+
Sbjct: 235 LMKSIKKA-GFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSYLMPGFIHLNSQPVSR 293
Query: 53 GKT----ALVVSPLISL-MQ--DQVMSLKQRGINAEFL-GSAQTDSSVQTKAETGYFQLL 104
GK LV++P L +Q + +G+ + + G +Q + G ++
Sbjct: 294 GKRNGPGMLVLTPTRELALQVGAECSKYSYKGLKSVCIYGGGNRKGQIQDIMK-GV-DII 351
Query: 105 FMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPF 164
TP + + ++ + L + +DEA + + G + ++ LD +R
Sbjct: 352 IATPGRLNDLQMNNFVNL--RSITYLVLDEADKMLDLGFEHQIMKILLD-VRP---DRQT 405
Query: 165 VALTATATEKVRIDIINSLKLKNPY-VTIASFDRKNLFYGVK--VINRGQSFVDELVQEI 221
+ +AT + +R + +S LK P V + + D + VK +I + L QE
Sbjct: 406 IMTSATWPDTIR-QLAHSY-LKEPMLVYVGTLDLVAVDT-VKQNIIITTEEEKRSLFQEF 462
Query: 222 LKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRV 281
L+S++ +IV+ +++S L G+ + HG RE A F ++++
Sbjct: 463 LQSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDFKTGKVKI 522
Query: 282 MVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
++AT G+D DV HV +Y P+ +E Y GR GR G
Sbjct: 523 LIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAG 564
>UNIPROTKB|D4ADV9 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 IPI:IPI00782021 Ensembl:ENSRNOT00000060732
Uniprot:D4ADV9
Length = 674
Score = 173 (66.0 bits), Expect = 6.3e-10, P = 6.3e-10
Identities = 87/336 (25%), Positives = 143/336 (42%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV----TGKTA--------- 56
GY+ P QK I ++ RD + TGSGK+ + LP L G TA
Sbjct: 281 GYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEP 340
Query: 57 --LVVSPLISLMQDQVMSLKQRG----INAEFL-GSAQTDSSVQTKAETGYFQLLFMTPE 109
++V+P L+ + ++ + A + G Q S++ + G +L TP
Sbjct: 341 ECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSIRQIVQ-GC-NILCATPG 398
Query: 110 KACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTA 169
+ ++ I K+ V +DEA + + G F E K+L L
Sbjct: 399 R--LMDIIGKEKIGLKQVKYLVLDEADRMLDMG--FGPEMKKLISCPGMPSKEQRQTLLF 454
Query: 170 TATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVK--VINRGQSFVDELVQEILKSVAG 227
+AT I + LK+ Y+ +A V+ ++ GQ E + EIL+++ G
Sbjct: 455 SATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQVGQYSKREKLVEILRNI-G 513
Query: 228 AGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA 287
+V+ T K + I+ L Q + + HG + RE+A F + V+VAT
Sbjct: 514 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 573
Query: 288 FGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
G+D +V+HVI++ P T++ Y GR GR G
Sbjct: 574 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCG 609
Score = 138 (53.6 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 38/123 (30%), Positives = 62/123 (50%)
Query: 206 VINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSK 265
++ GQ E + EIL+++ G +V+ T K + I+ L Q + + HG +
Sbjct: 493 ILQVGQYSKREKLVEILRNI-GDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQR 551
Query: 266 AREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQE---SGRCGRD 322
RE+A F + V+VAT G+D +V+HVI++ P T++ Y +GRCG
Sbjct: 552 EREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNT 611
Query: 323 GIA 325
G A
Sbjct: 612 GRA 614
>POMBASE|SPCC1795.11 [details] [associations]
symbol:sum3 "translation initiation RNA helicase Sum3"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=IMP] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0031047
"gene silencing by RNA" evidence=IDA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IGI] [GO:0071470
"cellular response to osmotic stress" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC1795.11 GO:GO:0005829 GO:GO:0005524
GO:GO:0007346 GO:GO:0051301 GO:GO:0007067 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0071470 GO:GO:0010628 GO:GO:0031047
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0031137 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0002183 HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4
OMA:KYERGGN EMBL:AF025536 EMBL:AF084222 EMBL:AB012389 EMBL:AJ237697
EMBL:AB027871 PIR:T43543 RefSeq:NP_588033.1
ProteinModelPortal:O13370 SMR:O13370 IntAct:O13370
MINT:MINT-4666622 STRING:O13370 PRIDE:O13370
EnsemblFungi:SPCC1795.11.1 GeneID:2538689 KEGG:spo:SPCC1795.11
NextBio:20799875 Uniprot:O13370
Length = 636
Score = 152 (58.6 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 37/132 (28%), Positives = 61/132 (46%)
Query: 205 KVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGS 264
KV++ S + +IL ++ G +++ T + + ++ L A + HG
Sbjct: 407 KVVHVEDSEKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNSNFPATSIHGDRTQ 466
Query: 265 KAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGI 324
+ RE A LF +MVAT G+D P+V HVI+Y P ++ Y GR GR G
Sbjct: 467 RERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGN 526
Query: 325 ASVCWLYYARSN 336
++ R+N
Sbjct: 527 TGQAVAFFNRNN 538
Score = 65 (27.9 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 7 KYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL 50
K GY+ P QK+ I + RD + TGSGK+ + P L
Sbjct: 185 KLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPIL 228
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 145 (56.1 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 34/112 (30%), Positives = 57/112 (50%)
Query: 218 VQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRD 277
+ EIL + ++V+ T + E++ L + +++ + HG + RE LF
Sbjct: 388 LMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIRSVSIHGDLKQIERERNLELFRSG 447
Query: 278 EIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQE---SGRCGRDGIAS 326
+ ++VAT G+D P+VRHVI+Y P + Y +GRCG GIA+
Sbjct: 448 QCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVHRIGRTGRCGNLGIAT 499
Score = 73 (30.8 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 16/39 (41%), Positives = 21/39 (53%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP 48
GYS P QK I ++ RD + TGSGK+ + LP
Sbjct: 158 GYSKPTPVQKHSIPTLLANRDLMSCAQTGSGKTAAFLLP 196
>UNIPROTKB|A4FV23 [details] [associations]
symbol:DDX21 "DDX21 protein" species:9913 "Bos taurus"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OMA:EILCVAY OrthoDB:EOG46143T EMBL:DAAA02061828
EMBL:BC123648 IPI:IPI00694353 RefSeq:NP_001076996.1
UniGene:Bt.92068 Ensembl:ENSBTAT00000019351 GeneID:781917
KEGG:bta:781917 InParanoid:A4FV23 NextBio:20925123 Uniprot:A4FV23
Length = 784
Score = 166 (63.5 bits), Expect = 6.9e-10, Sum P(2) = 6.9e-10
Identities = 40/119 (33%), Positives = 65/119 (54%)
Query: 217 LVQEILKSVAG-AGSIIVYCMTIKDVEEISK--ALKQLGVKAGTYHGQMGSKAREEAHRL 273
++ ++++ +G G I++C T K+ +E+S+ A++Q A + HG + K RE +
Sbjct: 427 VIGDVIRVYSGFQGRTIIFCETKKEAQELSQNVAVRQ---DAQSLHGDIPQKQREITLKG 483
Query: 274 FIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYY 332
F + V+VAT G+D P+V V+ PK +ESY SGR GR G VC +Y
Sbjct: 484 FRNGDFGVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGVCICFY 542
Score = 52 (23.4 bits), Expect = 6.9e-10, Sum P(2) = 6.9e-10
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP 48
L K G + P Q + +D + TG+GK+ + +P
Sbjct: 201 LLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIP 244
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 169 (64.5 bits), Expect = 7.6e-10, P = 7.6e-10
Identities = 80/348 (22%), Positives = 153/348 (43%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL---------- 50
+++TL + G + P Q+ I +++ +D L TG+GK+ + LP +
Sbjct: 17 LLNTLSE-LGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWQR 75
Query: 51 -VTGKT--ALVVSPLISLMQDQVMSLKQ--RGINAEFLGS-AQTDSSVQTKAETGYFQLL 104
K ALV+ P L Q + SL+ +G + + T VQ G +L
Sbjct: 76 EANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDIL 135
Query: 105 FMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGH--DFRLEYKQLDKLRTFLLGV 162
TP + ++ + L V + +DEA + + G D + ++L LR L
Sbjct: 136 IATPGR--LLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLF-- 191
Query: 163 PFVALTATATEKVRIDIINSLKLKNPY---VTIASFDRKNLFYGVKVINRGQSFVDELVQ 219
+AT K++ + +++P VT ++ + + V +++ + EL+
Sbjct: 192 ----FSATFDSKIKA--VAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRK--RELLS 243
Query: 220 EILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEI 279
++ S ++V+ T + + +++ LK G+KA + +G AR++A F ++
Sbjct: 244 YLIGS-KNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302
Query: 280 RVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASV 327
R ++AT G+D + V++Y P E Y GR GR G+A +
Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGL 350
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 169 (64.5 bits), Expect = 7.6e-10, P = 7.6e-10
Identities = 80/348 (22%), Positives = 153/348 (43%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL---------- 50
+++TL + G + P Q+ I +++ +D L TG+GK+ + LP +
Sbjct: 17 LLNTLSE-LGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQRFIEQPWQR 75
Query: 51 -VTGKT--ALVVSPLISLMQDQVMSLKQ--RGINAEFLGS-AQTDSSVQTKAETGYFQLL 104
K ALV+ P L Q + SL+ +G + + T VQ G +L
Sbjct: 76 EANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLNHLRGGVDIL 135
Query: 105 FMTPEKACIIPISFWSKLLKAGVCLFAVDEAHCISEWGH--DFRLEYKQLDKLRTFLLGV 162
TP + ++ + L V + +DEA + + G D + ++L LR L
Sbjct: 136 IATPGR--LLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSPLRQTLF-- 191
Query: 163 PFVALTATATEKVRIDIINSLKLKNPY---VTIASFDRKNLFYGVKVINRGQSFVDELVQ 219
+AT K++ + +++P VT ++ + + V +++ + EL+
Sbjct: 192 ----FSATFDSKIKA--VAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRK--RELLS 243
Query: 220 EILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEI 279
++ S ++V+ T + + +++ LK G+KA + +G AR++A F ++
Sbjct: 244 YLIGS-KNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAGKV 302
Query: 280 RVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASV 327
R ++AT G+D + V++Y P E Y GR GR G+A +
Sbjct: 303 RALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGL 350
>POMBASE|SPAC22F3.08c [details] [associations]
symbol:rok1 "ATP-dependent RNA helicase Rok1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC22F3.08c GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000242486 KO:K14779
PIR:T38183 RefSeq:NP_593033.1 ProteinModelPortal:Q09775
STRING:Q09775 EnsemblFungi:SPAC22F3.08c.1 GeneID:2541786
KEGG:spo:SPAC22F3.08c OMA:ERESINT OrthoDB:EOG425926
NextBio:20802875 Uniprot:Q09775
Length = 481
Score = 170 (64.9 bits), Expect = 7.6e-10, P = 7.6e-10
Identities = 79/323 (24%), Positives = 137/323 (42%)
Query: 18 QKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT-------GKTALVVSPLISLMQDQV 70
Q+ I I KRD L TGSGK++ Y P L G A++V+P L + Q+
Sbjct: 73 QRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGGYRAIIVAPTRELCE-QI 131
Query: 71 MSLKQR---GINAEFLGSAQTDSSVQTKAET--GYFQLLFMTPEKACIIPISFWSKLLKA 125
++ G + + + ++++ +Q KA + + TP + + I K
Sbjct: 132 YRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRL-VQAIQTGLSFEK- 189
Query: 126 GVCLFAVDEAHCISEWGH----DFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
V F +DEA + E G D L + L + + V +D I
Sbjct: 190 -VEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVEELAKVVTVDPIR 248
Query: 182 SLK-LKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKD 240
+ LK+ S D++ LF G V ++++++ + ++++ I+
Sbjct: 249 IIVGLKD--AATDSIDQRLLFVGSDT----SKIV--ILRQMISNGELKPRVVIFVQDIER 300
Query: 241 VEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHV 300
+ + L + G HG++ REEA F + EI V++AT GID V+ V
Sbjct: 301 AKALYTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMV 360
Query: 301 IHYGCPKTLESYYQESGRCGRDG 323
I++ P+++ SY GR GR G
Sbjct: 361 INFDFPQSVHSYIHRIGRTGRAG 383
>ZFIN|ZDB-GENE-030131-6215 [details] [associations]
symbol:ddx23 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 23" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-6215
GO:GO:0005524 GO:GO:0003676 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
CTD:9416 HOGENOM:HOG000268796 HOVERGEN:HBG102054 OrthoDB:EOG46T312
EMBL:CR936486 EMBL:CR354537 EMBL:BC060524 IPI:IPI00509665
RefSeq:NP_956176.1 UniGene:Dr.78688 STRING:Q6P9Z2
Ensembl:ENSDART00000019620 GeneID:334283 KEGG:dre:334283
InParanoid:Q6P9Z2 NextBio:20810336 Uniprot:Q6P9Z2
Length = 807
Score = 149 (57.5 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 48/168 (28%), Positives = 77/168 (45%)
Query: 170 TATEKVRIDIINSLKLKNPYVT-IASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGA 228
TAT ++ + L+ P V I S + + KVI + + + E+L S
Sbjct: 593 TATMPPAVERLARSYLRRPAVVYIGSAGKPHERVEQKVILMSEGEKRKKLLEVLAS-GFE 651
Query: 229 GSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAF 288
II++ K + ++K+L+++G A T HG G + RE A ++VAT
Sbjct: 652 PPIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVA 711
Query: 289 GMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336
G GID DV V++Y K +E Y GR GR G + V + + +
Sbjct: 712 GRGIDIQDVSMVLNYDMAKNIEDYIHRIGRTGRAGKSGVAMTFLTKED 759
Score = 70 (29.7 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV 51
GY P Q+ I ++ RD + V TGSGK+ + +P LV
Sbjct: 397 GYKDPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 438
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 172 (65.6 bits), Expect = 8.6e-10, P = 8.6e-10
Identities = 87/349 (24%), Positives = 153/349 (43%)
Query: 11 YSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV-----------TGKTALVV 59
Y+ P Q + + RD + + TGSGK+ + P L+ G A++V
Sbjct: 268 YTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 327
Query: 60 SPLISLMQDQVMSLKQRGINAEFLGSAQT--DSSV--QTKAETGYFQLLFMTPEKACIIP 115
P L Q Q+ S +R A L S S+ Q KA +++ TP + I
Sbjct: 328 CPTRELCQ-QIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRL-IDH 385
Query: 116 ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
+ + L+ V DEA + + G ++++ +R + F A EK+
Sbjct: 386 VKKKATNLQR-VTYLVFDEADRMFDMGFEYQVR-SIASHVRPDRQTLLFSATFRKKIEKL 443
Query: 176 RIDI-INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVY 234
DI I+ +++ + A+ D + V++ G S + L + +++ + +GS++++
Sbjct: 444 ARDILIDPIRVVQGDIGEANEDVTQI---VEIFPSGPSKWNWLTRRLVEFTS-SGSVLLF 499
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
+ EE++ LKQ G HG M R + F + I ++VAT G+D
Sbjct: 500 VTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDI 559
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCW--LYYARSNFAKGD 341
P ++ VI+Y + ++++ GR GR G V + L SNFA GD
Sbjct: 560 PSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFA-GD 607
>RGD|1307306 [details] [associations]
symbol:Ddx21 "DEAD (Asp-Glu-Ala-Asp) box helicase 21"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0009615 "response to virus" evidence=ISO] [GO:0043330 "response
to exogenous dsRNA" evidence=ISO] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:1307306 GO:GO:0005524 GO:GO:0005730 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OrthoDB:EOG46143T EMBL:BC105878 IPI:IPI00198801
RefSeq:NP_001032278.1 UniGene:Rn.162310 ProteinModelPortal:Q3B8Q1
STRING:Q3B8Q1 PhosphoSite:Q3B8Q1 PRIDE:Q3B8Q1
Ensembl:ENSRNOT00000068184 GeneID:317399 KEGG:rno:317399
UCSC:RGD:1307306 NextBio:671745 Genevestigator:Q3B8Q1
Uniprot:Q3B8Q1
Length = 782
Score = 165 (63.1 bits), Expect = 8.9e-10, Sum P(2) = 8.9e-10
Identities = 41/119 (34%), Positives = 63/119 (52%)
Query: 217 LVQEILKSVAG-AGSIIVYCMTIKDVEEISK--ALKQLGVKAGTYHGQMGSKAREEAHRL 273
++ ++++ +G G I++C T KD +E+S+ +KQ A + HG + K RE +
Sbjct: 422 VIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQ---DAQSLHGDIPQKQREITLKG 478
Query: 274 FIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYY 332
F V+VAT G+D P+V V+ PK +ESY SGR GR G VC +Y
Sbjct: 479 FRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFY 537
Score = 52 (23.4 bits), Expect = 8.9e-10, Sum P(2) = 8.9e-10
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP 48
L K G + P Q + +D + TG+GK+ + +P
Sbjct: 196 LLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIP 239
Score = 44 (20.5 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 19/50 (38%), Positives = 22/50 (44%)
Query: 39 SGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQT 88
SGK L Q TGKT PLI +Q + K RG + L A T
Sbjct: 218 SGKDLIAQART-GTGKTFSFAIPLIEKLQGGLQERK-RGRAPQVLVLAPT 265
Score = 37 (18.1 bits), Expect = 3.1e-08, Sum P(2) = 3.1e-08
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT 88
+ ++ V LK RG+N F A+T
Sbjct: 189 ISEETVKLLKARGVNFLFPIQAKT 212
>UNIPROTKB|F1P0I3 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313
Pfam:PF13959 GeneTree:ENSGT00550000074980 IPI:IPI00595697
OMA:ADKVIEP EMBL:AADN02005060 Ensembl:ENSGALT00000027709
Uniprot:F1P0I3
Length = 875
Score = 173 (66.0 bits), Expect = 9.2e-10, P = 9.2e-10
Identities = 82/331 (24%), Positives = 140/331 (42%)
Query: 11 YSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL----------VTGKTALVVS 60
Y + Q+ I ++ +D L TGSGK+L + +P L G L++S
Sbjct: 93 YRMVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPALELLYRLQWTSADGLGVLIIS 152
Query: 61 PLISLMQDQVMSLKQRGINAEF-LGSAQTDSSVQTKAET-GYFQLLFMTPEKACIIPISF 118
P L L++ G N +F G ++ ++E + +L TP + + +
Sbjct: 153 PTRELAFQTFKVLRKVGKNHDFSAGLIIGGKDLKEESERIHHINMLICTPGRL-LQHMDE 211
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLE--YKQLDKLRTFLLGVPFVALTATATEKVR 176
S + + + +DEA I + G + + L K R LL +AT T+ V+
Sbjct: 212 TSYFYASDLQMLILDEADRILDMGFADTMNAIIENLPKKRQTLL------FSATQTKSVK 265
Query: 177 IDIINSLKLKNP-YVTI---ASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSII 232
D+ L LK+P YV + A F ++ Q ++ L L+S SI+
Sbjct: 266 -DLAR-LSLKDPEYVWVHEKAKFSTPATLDQNYIVCELQHKINVLYS-FLRSHLKKKSIV 322
Query: 233 VYCMTIKDVEEISKALKQL--GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGM 290
+ + K+V+ + + +L G+ HG+ R E + F+R + V+ AT
Sbjct: 323 FFA-SCKEVQYLFRVFCKLQPGLPVLALHGKQQQMKRMEVYTCFVRKKAAVLFATDIAAR 381
Query: 291 GIDKPDVRHVIHYGCPKTLESYYQESGRCGR 321
G+D P V VI + CP+ +Y GR R
Sbjct: 382 GLDFPAVNWVIQFDCPEDANTYIHRVGRTAR 412
>UNIPROTKB|Q5ZJF6 [details] [associations]
symbol:DDX10 "Probable ATP-dependent RNA helicase DDX10"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
EMBL:AJ720478 IPI:IPI00595697 RefSeq:NP_001073193.1
UniGene:Gga.15096 HSSP:P26196 ProteinModelPortal:Q5ZJF6 SMR:Q5ZJF6
STRING:Q5ZJF6 GeneID:418965 KEGG:gga:418965 CTD:1662
HOVERGEN:HBG102756 InParanoid:Q5ZJF6 OrthoDB:EOG4BK536
NextBio:20822084 Uniprot:Q5ZJF6
Length = 875
Score = 173 (66.0 bits), Expect = 9.2e-10, P = 9.2e-10
Identities = 82/331 (24%), Positives = 140/331 (42%)
Query: 11 YSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL----------VTGKTALVVS 60
Y + Q+ I ++ +D L TGSGK+L + +P L G L++S
Sbjct: 93 YRMVTEIQRQTIGLALQGKDVLGAAKTGSGKTLAFIVPALELLYRLQWTSADGLGVLIIS 152
Query: 61 PLISLMQDQVMSLKQRGINAEF-LGSAQTDSSVQTKAET-GYFQLLFMTPEKACIIPISF 118
P L L++ G N +F G ++ ++E + +L TP + + +
Sbjct: 153 PTRELAFQTFKVLRKVGKNHDFSAGLIIGGKDLKEESERIHHINMLICTPGRL-LQHMDE 211
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHDFRLE--YKQLDKLRTFLLGVPFVALTATATEKVR 176
S + + + +DEA I + G + + L K R LL +AT T+ V+
Sbjct: 212 TSYFYASDLQMLILDEADRILDMGFADTMNAIIENLPKKRQTLL------FSATQTKSVK 265
Query: 177 IDIINSLKLKNP-YVTI---ASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSII 232
D+ L LK+P YV + A F ++ Q ++ L L+S SI+
Sbjct: 266 -DLAR-LSLKDPEYVWVHEKAKFSTPATLDQNYIVCELQHKINVLYS-FLRSHLKKKSIV 322
Query: 233 VYCMTIKDVEEISKALKQL--GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGM 290
+ + K+V+ + + +L G+ HG+ R E + F+R + V+ AT
Sbjct: 323 FFA-SCKEVQYLFRVFCKLQPGLPVLALHGKQQQMKRMEVYTCFVRKKAAVLFATDIAAR 381
Query: 291 GIDKPDVRHVIHYGCPKTLESYYQESGRCGR 321
G+D P V VI + CP+ +Y GR R
Sbjct: 382 GLDFPAVNWVIQFDCPEDANTYIHRVGRTAR 412
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 172 (65.6 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 81/333 (24%), Positives = 140/333 (42%)
Query: 29 RDCLVVMATGSGKSLCYQLPPLV-----------TGKTALVVSPLISLMQDQVMSLK-QR 76
RD + V TGSGK+L Y LP +V G ALV++P L Q Q+ + +
Sbjct: 195 RDLVGVAQTGSGKTLAYVLPAVVHINNQPRLERGDGPIALVLAPTRELAQ-QIQQVAIEF 253
Query: 77 GINAE-----FLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCLFA 131
G N G A + E G +++ TP + I + + LK C +
Sbjct: 254 GSNTHVRNTCIFGGAPKGQQARD-LERGV-EIVIATPGRL-IDFLERGTTSLKR--CTYL 308
Query: 132 V-DEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYV 190
V DEA + + G + ++ K + ++R + + A ++ + +N+ N
Sbjct: 309 VLDEADRMLDMGFEPQIR-KIMQQIRPDRQVLMWSATWPKEVRQLAEEFLNNYIQVN-IG 366
Query: 191 TIASFDRKNLFYGVKVINRGQSFVD--ELVQEILKSVAGAGSIIVYCMTIKDVEEISKAL 248
+++ N+ V V + + + +L+ +I S I++ T K V+EI++ +
Sbjct: 367 SLSLSANHNILQIVDVCDENEKLMKLIKLLTDI--SAENETKTIIFVETKKRVDEITRNI 424
Query: 249 KQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKT 308
+ G +A HG + R+ F ++VAT G+D DV+ VI+Y P
Sbjct: 425 SRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPSN 484
Query: 309 LESYYQESGRCGRDGIASVCWLYYARSNFAKGD 341
E Y GR GR + + SN K +
Sbjct: 485 SEDYVHRIGRTGRSNNTGTAYTLFTHSNANKAN 517
>MGI|MGI:1860494 [details] [associations]
symbol:Ddx21 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 21"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003725 "double-stranded RNA binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005730 "nucleolus" evidence=ISS] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008152 "metabolic process"
evidence=ISS] [GO:0009615 "response to virus" evidence=IMP]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0043330
"response to exogenous dsRNA" evidence=IMP] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1860494 GO:GO:0005524 GO:GO:0005730 EMBL:CH466553
GO:GO:0009615 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0043330 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 CTD:9188 HOGENOM:HOG000268805
HOVERGEN:HBG051331 OMA:EILCVAY OrthoDB:EOG46143T EMBL:AF220365
EMBL:AF159131 EMBL:AK160095 EMBL:BC043655 IPI:IPI00120691
RefSeq:NP_062426.2 UniGene:Mm.413275 ProteinModelPortal:Q9JIK5
SMR:Q9JIK5 DIP:DIP-48574N IntAct:Q9JIK5 STRING:Q9JIK5
PhosphoSite:Q9JIK5 PaxDb:Q9JIK5 PRIDE:Q9JIK5
Ensembl:ENSMUST00000045866 GeneID:56200 KEGG:mmu:56200
InParanoid:Q3TVJ3 NextBio:312026 Bgee:Q9JIK5 CleanEx:MM_DDX21
Genevestigator:Q9JIK5 GermOnline:ENSMUSG00000020075 Uniprot:Q9JIK5
Length = 851
Score = 165 (63.1 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 41/119 (34%), Positives = 63/119 (52%)
Query: 217 LVQEILKSVAG-AGSIIVYCMTIKDVEEISK--ALKQLGVKAGTYHGQMGSKAREEAHRL 273
++ ++++ +G G I++C T KD +E+S+ +KQ A + HG + K RE +
Sbjct: 498 VIGDVIRVYSGHQGRTIIFCETKKDAQELSQNTCIKQ---DAQSLHGDIPQKQREITLKG 554
Query: 274 FIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYY 332
F V+VAT G+D P+V V+ PK +ESY SGR GR G VC +Y
Sbjct: 555 FRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFY 613
Score = 52 (23.4 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP 48
L K G + P Q + +D + TG+GK+ + +P
Sbjct: 272 LLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIP 315
Score = 44 (20.5 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 19/50 (38%), Positives = 22/50 (44%)
Query: 39 SGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQT 88
SGK L Q TGKT PLI +Q + K RG + L A T
Sbjct: 294 SGKDLIAQART-GTGKTFSFAIPLIEKLQGGLQERK-RGRAPQVLVLAPT 341
Score = 37 (18.1 bits), Expect = 3.9e-08, Sum P(2) = 3.9e-08
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT 88
+ ++ V LK RG+N F A+T
Sbjct: 265 ISEETVKLLKARGVNFLFPIQAKT 288
>UNIPROTKB|E2RC35 [details] [associations]
symbol:DDX10 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14776
InterPro:IPR025313 Pfam:PF13959 GeneTree:ENSGT00550000074980
CTD:1662 OMA:ADKVIEP EMBL:AAEX03003508 RefSeq:XP_536583.2
Ensembl:ENSCAFT00000022758 GeneID:479448 KEGG:cfa:479448
Uniprot:E2RC35
Length = 871
Score = 172 (65.6 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 87/337 (25%), Positives = 139/337 (41%)
Query: 11 YSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL----------VTGKTALVVS 60
Y + QK I ++ +D L TGSGK+L + +P L G L++S
Sbjct: 89 YRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIIS 148
Query: 61 PLISLMQDQVMSLKQRGINAEF-LGSAQTDSSVQTKAET-GYFQLLFMTPEKACII---P 115
P L L++ G N +F G ++ +AE +L TP +
Sbjct: 149 PTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDET 208
Query: 116 ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLE--YKQLDKLRTFLLGVPFVALTATATE 173
I F + L+ + +DEA I + G + + L K R LL +AT T+
Sbjct: 209 ICFHATNLQ----MLVLDEADRILDMGFADTMNAIIENLPKKRQTLL------FSATQTK 258
Query: 174 KVRIDIINSLKLKNP-YVTIASFDRKNLFYGVKVINRGQSFVDELVQEI------LKSVA 226
V+ D+ L LKNP Y+ + + Y V EL Q+I L+S
Sbjct: 259 SVK-DLAR-LSLKNPEYIWV----HEKAKYSTPATLEQNYIVCELQQKISVLYSFLRSHL 312
Query: 227 GAGSIIVYCMTIKDVEEISKALKQL--GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVA 284
SI+ + + K+V+ + + +L G+ HG+ R E + F+R V+ A
Sbjct: 313 KKKSIVFFS-SCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRSAVLFA 371
Query: 285 TMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGR 321
T G+D P V V+ + CP+ +Y +GR R
Sbjct: 372 TDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTAR 408
>UNIPROTKB|F1NTS2 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 IPI:IPI00588271 EMBL:AADN02041229
EMBL:AADN02041230 ProteinModelPortal:F1NTS2
Ensembl:ENSGALT00000038969 OMA:KTRNGVD ArrayExpress:F1NTS2
Uniprot:F1NTS2
Length = 414
Score = 167 (63.8 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 78/351 (22%), Positives = 145/351 (41%)
Query: 5 LKKYFGYSVFRP--YQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL------VTGKTA 56
L+ + Y +P Q+ I++II+ RD + +G+GK+ + + L V A
Sbjct: 52 LRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQA 111
Query: 57 LVVSPLISL-MQDQ-VMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACII 114
L+++P L +Q Q V + K + + L A + G+ ++ + ++
Sbjct: 112 LILAPTRELAVQIQKVGTSKSLPVKMKELHKAMGSFKQEVDLPAGHEVARCISGIQLQLL 171
Query: 115 PISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEK 174
+ L + + +DEA + G ++ Y D R V ++AT +
Sbjct: 172 YMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQI-Y---DVYRYLPPATQVVLISATLPHE 227
Query: 175 VRIDIINSLKLKNPYVTIASFDRKNLFYGVK----VINRGQSFVDELVQEILKSVAGAGS 230
+ +++ N + +P + D L G+K + R + D L L
Sbjct: 228 I-LEMTNKF-MTDPIRILVKRDELTL-EGIKQFFVAVEREEWKFDTLCD--LYDTLTITQ 282
Query: 231 IIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGM 290
+++C T + V+ +++ +++ + HG M K RE + F RV+++T +
Sbjct: 283 AVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWAR 342
Query: 291 GIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD 341
G+D P V +I+Y P E Y GR GR G V NF K D
Sbjct: 343 GLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVA------INFVKND 387
>UNIPROTKB|Q5F485 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
NextBio:20822943 Uniprot:Q5F485
Length = 944
Score = 172 (65.6 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 87/349 (24%), Positives = 153/349 (43%)
Query: 11 YSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV-----------TGKTALVV 59
Y+ P Q + + RD + + TGSGK+ + P L+ G A++V
Sbjct: 273 YTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 332
Query: 60 SPLISLMQDQVMSLKQRGINAEFLGSAQT--DSSV--QTKAETGYFQLLFMTPEKACIIP 115
P L Q Q+ S +R A L S S+ Q KA +++ TP + I
Sbjct: 333 CPTRELCQ-QIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRL-IDH 390
Query: 116 ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
+ + L+ V DEA + + G ++++ +R + F A EK+
Sbjct: 391 VKKKATNLQR-VTYLVFDEADRMFDMGFEYQVR-SIASHVRPDRQTLLFSATFRKKIEKL 448
Query: 176 RIDI-INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVY 234
DI I+ +++ + A+ D + V++ G S + L + +++ + +GS++++
Sbjct: 449 ARDILIDPIRVVQGDIGEANEDVTQI---VEIFPSGPSKWNWLTRRLVEFTS-SGSVLLF 504
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
+ EE++ LKQ G HG M R + F + I ++VAT G+D
Sbjct: 505 VTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDI 564
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCW--LYYARSNFAKGD 341
P ++ VI+Y + ++++ GR GR G V + L SNFA GD
Sbjct: 565 PSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFA-GD 612
>UNIPROTKB|F1NJ40 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AADN02056764
Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
Length = 946
Score = 172 (65.6 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 87/349 (24%), Positives = 153/349 (43%)
Query: 11 YSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV-----------TGKTALVV 59
Y+ P Q + + RD + + TGSGK+ + P L+ G A++V
Sbjct: 275 YTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 334
Query: 60 SPLISLMQDQVMSLKQRGINAEFLGSAQT--DSSV--QTKAETGYFQLLFMTPEKACIIP 115
P L Q Q+ S +R A L S S+ Q KA +++ TP + I
Sbjct: 335 CPTRELCQ-QIHSECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRL-IDH 392
Query: 116 ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
+ + L+ V DEA + + G ++++ +R + F A EK+
Sbjct: 393 VKKKATNLQR-VTYLVFDEADRMFDMGFEYQVR-SIASHVRPDRQTLLFSATFRKKIEKL 450
Query: 176 RIDI-INSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVY 234
DI I+ +++ + A+ D + V++ G S + L + +++ + +GS++++
Sbjct: 451 ARDILIDPIRVVQGDIGEANEDVTQI---VEIFPSGPSKWNWLTRRLVEFTS-SGSVLLF 506
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
+ EE++ LKQ G HG M R + F + I ++VAT G+D
Sbjct: 507 VTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDI 566
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCW--LYYARSNFAKGD 341
P ++ VI+Y + ++++ GR GR G V + L SNFA GD
Sbjct: 567 PSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFA-GD 614
>DICTYBASE|DDB_G0287361 [details] [associations]
symbol:ddx41 "DEAD box protein abstrakt"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
Length = 671
Score = 170 (64.9 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 82/350 (23%), Positives = 154/350 (44%)
Query: 16 PYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP------------PLVTGKT--ALVVSP 61
P Q + I+ RD + + TGSGK+L + LP P++ G+ L++ P
Sbjct: 247 PIQVQGLPVILSGRDMIGIAYTGSGKTLVFTLPMVLFALEEECKLPIIQGEGPFGLILCP 306
Query: 62 LISLMQ---DQVMS----LKQRGINAEFLGSAQTDSSVQTKAETGYFQ----LLFMTPEK 110
L + D V S L + G + + L + + + + F+ ++ TP +
Sbjct: 307 SRELARQTYDLVNSFTNALHKNGGHPQ-LRTLLAIGGIDLREQEHIFKKGVHMIIATPGR 365
Query: 111 ACIIPISFWSKLLKAGVCLF-AVDEAHCISEWGH--DFRLEYKQLDKLRTFLLGVPFVAL 167
++ + K + +C + +DEA + + G D R R LL
Sbjct: 366 --LLDL-LNKKKINFKLCKYLGLDEADRLIDLGFEDDIRSVLDNFTNQRQTLL------F 416
Query: 168 TATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKV-INRGQSFVDELVQEILKSVA 226
+AT +K++ + S + V + NL +V + ++ + L++ + K+
Sbjct: 417 SATMPKKIQ-EFARSALVLPVEVNVGRAGAANLNVTQEVEFVKPEAKIVYLLECLQKTPP 475
Query: 227 GAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM 286
++++C KDV++I + L V+A + HG RE A + F + V+VAT
Sbjct: 476 ---PVLIFCENKKDVDDIYEYLLLKQVEAVSIHGDKSQDERESAIKAFREGKKDVLVATD 532
Query: 287 AFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336
G+D P+++HVI++ P+ +E+Y GR GR G V + ++N
Sbjct: 533 VASKGLDFPEIQHVINFDMPREIENYIHRIGRTGRRGNKGVATTFINKNN 582
>GENEDB_PFALCIPARUM|PFE0925c [details] [associations]
symbol:PFE0925c "snrnp protein, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
HSSP:Q58083 HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 153 (58.9 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 46/158 (29%), Positives = 80/158 (50%)
Query: 170 TATEKVRIDIINSLKLKNP-YVTIAS--FDRKNLFYGVKVINRGQSFVDELVQEILKSVA 226
+AT ++ ++ L+ P Y++I ++++ ++ + G+ + +QEIL+
Sbjct: 910 SATMPPSVERLSRKYLRAPAYISIGDPGAGKRSIEQKLEFLTEGKK--KQKLQEILEMYE 967
Query: 227 GAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM 286
IIV+ K + ISK++ ++ KA HG + RE+ F E ++VAT
Sbjct: 968 PP--IIVFVNQKKVADIISKSITKMKYKAVALHGGKAQEIREQTLSAFKNAEFDILVATD 1025
Query: 287 AFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGI 324
G GID V+ VI++ PK +ESY GR GR G+
Sbjct: 1026 VAGRGIDVHGVKLVINFDMPKDIESYTHRIGRTGRAGM 1063
Score = 67 (28.6 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL 50
++ +KK Y P Q I +E RD + + TGSGK+ + LP L
Sbjct: 709 LLKAIKKA-KYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPML 757
>UNIPROTKB|Q8I0W7 [details] [associations]
symbol:PFE0925c "Snrnp protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 153 (58.9 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 46/158 (29%), Positives = 80/158 (50%)
Query: 170 TATEKVRIDIINSLKLKNP-YVTIAS--FDRKNLFYGVKVINRGQSFVDELVQEILKSVA 226
+AT ++ ++ L+ P Y++I ++++ ++ + G+ + +QEIL+
Sbjct: 910 SATMPPSVERLSRKYLRAPAYISIGDPGAGKRSIEQKLEFLTEGKK--KQKLQEILEMYE 967
Query: 227 GAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATM 286
IIV+ K + ISK++ ++ KA HG + RE+ F E ++VAT
Sbjct: 968 PP--IIVFVNQKKVADIISKSITKMKYKAVALHGGKAQEIREQTLSAFKNAEFDILVATD 1025
Query: 287 AFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGI 324
G GID V+ VI++ PK +ESY GR GR G+
Sbjct: 1026 VAGRGIDVHGVKLVINFDMPKDIESYTHRIGRTGRAGM 1063
Score = 67 (28.6 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 1 MVSTLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL 50
++ +KK Y P Q I +E RD + + TGSGK+ + LP L
Sbjct: 709 LLKAIKKA-KYEKPTPIQMQAIPIALEMRDLIGIAETGSGKTAAFVLPML 757
>UNIPROTKB|Q91372 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:8355 "Xenopus laevis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS] [GO:0032019
"mitochondrial cloud" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005635 GO:GO:0048477 GO:GO:0007283
GO:GO:0003676 GO:GO:0007281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 HOVERGEN:HBG015893 CTD:54514 KO:K13982
GO:GO:0071547 EMBL:AF046043 PIR:I51235 RefSeq:NP_001081728.1
UniGene:Xl.256 ProteinModelPortal:Q91372 SMR:Q91372 GeneID:398019
KEGG:xla:398019 Xenbase:XB-GENE-1016814 Uniprot:Q91372
Length = 700
Score = 170 (64.9 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 89/336 (26%), Positives = 143/336 (42%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL-VTGKTALVVSPLISLMQD 68
GY P QK I I+ RD + TGSGK+ + LP L + S + L +
Sbjct: 293 GYVKLTPVQKHSIPIIMAGRDLMACAQTGSGKTAAFLLPILSYMMNEGITASQYLQLQEP 352
Query: 69 Q--VMSLKQRGINAEFLGSAQTD--SSVQTKAETGYFQLL--FMTPEKACIIPISFWSKL 122
+ +++ + IN +L + + + V+ G Q + EK C I + +L
Sbjct: 353 EAIIIAPTRELINQIYLDARKFSYGTCVRPVVVYGGIQPVHAMRDVEKGCNILCATPGRL 412
Query: 123 L------KAGVC---LFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPF------VAL 167
L K G+ +DEA + + G F E ++KL T G+P +
Sbjct: 413 LDIVSKEKIGLSKLRYLVLDEADRMLDMG--FAPE---IEKLMT-KPGMPTKEKRQTLMF 466
Query: 168 TATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG 227
+AT E++R N LK ++ +V + V+ ++ E + EILKS
Sbjct: 467 SATYPEEIRRLASNYLKSEHLFVVVGLVGGACSDVAQTVLEMRENGKMEKLLEILKSSEK 526
Query: 228 AGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA 287
++I + T K + I+ L Q + + HG RE A F + V+V T
Sbjct: 527 ERTMI-FVNTKKKADFIAGYLCQEKFSSTSIHGDREQYQRESALWDFRTGKCTVIVCTAV 585
Query: 288 FGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
G+D +V+HVI+Y PK ++ Y GR GR G
Sbjct: 586 AARGLDIENVQHVINYDVPKEVDEYVHRIGRTGRCG 621
Score = 129 (50.5 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 46/162 (28%), Positives = 74/162 (45%)
Query: 168 TATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAG 227
+AT E++R N LK ++ +V + V+ ++ E + EILKS
Sbjct: 467 SATYPEEIRRLASNYLKSEHLFVVVGLVGGACSDVAQTVLEMRENGKMEKLLEILKSSEK 526
Query: 228 AGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA 287
++I + T K + I+ L Q + + HG RE A F + V+V T
Sbjct: 527 ERTMI-FVNTKKKADFIAGYLCQEKFSSTSIHGDREQYQRESALWDFRTGKCTVIVCTAV 585
Query: 288 FGMGIDKPDVRHVIHYGCPKTLESYYQE---SGRCGRDGIAS 326
G+D +V+HVI+Y PK ++ Y +GRCG G A+
Sbjct: 586 AARGLDIENVQHVINYDVPKEVDEYVHRIGRTGRCGNTGKAT 627
>RGD|1308793 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10116 "Rattus norvegicus" [GO:0000237 "leptotene"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0007141 "male meiosis I" evidence=IEA;ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA;ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0032880 "regulation of protein localization"
evidence=IEA;ISO] [GO:0033391 "chromatoid body" evidence=IEA;ISO]
[GO:0044464 "cell part" evidence=ISO] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA;ISO] [GO:0071546 "pi-body"
evidence=ISO;ISS] [GO:0071547 "piP-body" evidence=ISO;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 170 (64.9 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 86/336 (25%), Positives = 142/336 (42%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV----TGKTA--------- 56
GY+ P QK I ++ RD + TGSGK+ + LP L G TA
Sbjct: 292 GYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEP 351
Query: 57 --LVVSPLISLMQDQVMSLKQRG----INAEFL-GSAQTDSSVQTKAETGYFQLLFMTPE 109
++V+P L+ + ++ + A + G Q S++ + G +L TP
Sbjct: 352 ECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSIRQIVQ-GC-NILCATPG 409
Query: 110 KACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTA 169
+ ++ I K+ V +DEA + + G F E K+L L
Sbjct: 410 R--LMDIIGKEKIGLKQVKYLVLDEADRMLDMG--FGPEMKKLISCPGMPSKEQRQTLLF 465
Query: 170 TATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVK--VINRGQSFVDELVQEILKSVAG 227
+AT I + LK+ Y+ +A V+ ++ G F + EIL+++ G
Sbjct: 466 SATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQVGPVFKKRKLVEILRNI-G 524
Query: 228 AGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA 287
+V+ T K + I+ L Q + + HG + RE+A F + V+VAT
Sbjct: 525 DERPMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 584
Query: 288 FGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
G+D +V+HVI++ P T++ Y GR GR G
Sbjct: 585 AARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCG 620
Score = 135 (52.6 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 37/123 (30%), Positives = 61/123 (49%)
Query: 206 VINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSK 265
++ G F + EIL+++ G +V+ T K + I+ L Q + + HG +
Sbjct: 504 ILQVGPVFKKRKLVEILRNI-GDERPMVFVETKKKADFIATFLCQEKISTTSIHGDREQR 562
Query: 266 AREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQE---SGRCGRD 322
RE+A F + V+VAT G+D +V+HVI++ P T++ Y +GRCG
Sbjct: 563 EREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGNT 622
Query: 323 GIA 325
G A
Sbjct: 623 GRA 625
>UNIPROTKB|Q64060 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 170 (64.9 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 86/336 (25%), Positives = 142/336 (42%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV----TGKTA--------- 56
GY+ P QK I ++ RD + TGSGK+ + LP L G TA
Sbjct: 292 GYTKLTPVQKYSIPIVLAGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEP 351
Query: 57 --LVVSPLISLMQDQVMSLKQRG----INAEFL-GSAQTDSSVQTKAETGYFQLLFMTPE 109
++V+P L+ + ++ + A + G Q S++ + G +L TP
Sbjct: 352 ECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQFGHSIRQIVQ-GC-NILCATPG 409
Query: 110 KACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTA 169
+ ++ I K+ V +DEA + + G F E K+L L
Sbjct: 410 R--LMDIIGKEKIGLKQVKYLVLDEADRMLDMG--FGPEMKKLISCPGMPSKEQRQTLLF 465
Query: 170 TATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVK--VINRGQSFVDELVQEILKSVAG 227
+AT I + LK+ Y+ +A V+ ++ G F + EIL+++ G
Sbjct: 466 SATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQSILQVGPVFKKRKLVEILRNI-G 524
Query: 228 AGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA 287
+V+ T K + I+ L Q + + HG + RE+A F + V+VAT
Sbjct: 525 DERPMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 584
Query: 288 FGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
G+D +V+HVI++ P T++ Y GR GR G
Sbjct: 585 AARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCG 620
Score = 135 (52.6 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 37/123 (30%), Positives = 61/123 (49%)
Query: 206 VINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSK 265
++ G F + EIL+++ G +V+ T K + I+ L Q + + HG +
Sbjct: 504 ILQVGPVFKKRKLVEILRNI-GDERPMVFVETKKKADFIATFLCQEKISTTSIHGDREQR 562
Query: 266 AREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQE---SGRCGRD 322
RE+A F + V+VAT G+D +V+HVI++ P T++ Y +GRCG
Sbjct: 563 EREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTGRCGNT 622
Query: 323 GIA 325
G A
Sbjct: 623 GRA 625
>UNIPROTKB|Q6GWX0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 EMBL:AY626785 RefSeq:NP_001001910.1 UniGene:Ssc.42782
ProteinModelPortal:Q6GWX0 SMR:Q6GWX0 STRING:Q6GWX0 GeneID:431672
KEGG:ssc:431672 Uniprot:Q6GWX0
Length = 722
Score = 170 (64.9 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 87/336 (25%), Positives = 143/336 (42%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV----TGKTA--------- 56
GY+ P QK I I+ RD + TGSGK+ + LP L G TA
Sbjct: 305 GYTKLTPVQKYSIPIILAGRDLMACAQTGSGKTAAFLLPILAHMMHDGITASRFKELQEP 364
Query: 57 --LVVSPLISLMQDQVMSLKQRG----INAEFL-GSAQTDSSVQTKAETGYFQLLFMTPE 109
++V+P L+ + ++ + A + G Q S++ + G +L TP
Sbjct: 365 ECIIVAPTRELVNQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQ-GC-NILCATPG 422
Query: 110 KACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTA 169
+ ++ I K+ + +DEA + + G F E K+L L
Sbjct: 423 R--LMDIIGKEKIGLKQIKYLVLDEADRMLDMG--FGPEMKKLISCPGMPSKEQRQTLMF 478
Query: 170 TATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKV--INRGQSFVDELVQEILKSVAG 227
+AT I + + LK+ Y+ +A V+ + GQ E + EIL+++ G
Sbjct: 479 SATFPEEIQRLAAEFLKSNYLFVAVGQVGGACRDVQQADLQVGQYSKREKLLEILRNI-G 537
Query: 228 AGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA 287
+V+ T K + I+ L Q + + HG + RE+A F + V+VAT
Sbjct: 538 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRFGKCPVLVATSV 597
Query: 288 FGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
G+D +V+HVI++ P T++ Y GR GR G
Sbjct: 598 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCG 633
Score = 136 (52.9 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 38/119 (31%), Positives = 60/119 (50%)
Query: 210 GQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREE 269
GQ E + EIL+++ G +V+ T K + I+ L Q + + HG + RE+
Sbjct: 521 GQYSKREKLLEILRNI-GDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQ 579
Query: 270 AHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQE---SGRCGRDGIA 325
A F + V+VAT G+D +V+HVI++ P T++ Y +GRCG G A
Sbjct: 580 ALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNTGRA 638
>UNIPROTKB|E1BW15 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0009615 "response to virus" evidence=IEA]
[GO:0043330 "response to exogenous dsRNA" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005730 GO:GO:0003725
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0043330 GeneTree:ENSGT00680000100003 OMA:EILCVAY
EMBL:AADN02028009 IPI:IPI00582179 Ensembl:ENSGALT00000006591
Uniprot:E1BW15
Length = 693
Score = 166 (63.5 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 40/121 (33%), Positives = 64/121 (52%)
Query: 217 LVQEILKSVAGA-GSIIVYCMTIKDVEEIS--KALKQLGVKAGTYHGQMGSKAREEAHRL 273
++ ++++ +G+ G IV+C T KD E++ ++KQ + HG + K RE +
Sbjct: 353 VIGDVIQVYSGSYGRTIVFCETKKDANELALNASIKQ---DCQSLHGDIPQKQREITLKG 409
Query: 274 FIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYA 333
F +V+VAT G+D P+V V+ PK +ESY SGR GR G +C +Y
Sbjct: 410 FRNGAFKVLVATNVAARGLDIPEVDLVVQSSPPKDVESYIHRSGRTGRAGRTGICICFYQ 469
Query: 334 R 334
R
Sbjct: 470 R 470
Score = 47 (21.6 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP 48
G + P Q + +D + TG+GK+ + +P
Sbjct: 132 GVTYLFPVQVKTFNPVYSGKDVIAQARTGTGKTFSFAIP 170
Score = 41 (19.5 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 39 SGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQT 88
SGK + Q TGKT PLI +Q ++RG + + L A T
Sbjct: 149 SGKDVIAQART-GTGKTFSFAIPLIEKLQADSQE-RRRGRSPKVLVLAPT 196
>FB|FBgn0263231 [details] [associations]
symbol:bel "belle" species:7227 "Drosophila melanogaster"
[GO:0007286 "spermatid development" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0002168 "instar larval
development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0016442 "RNA-induced silencing complex" evidence=IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0043025 "neuronal cell body" evidence=IDA] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005875 GO:GO:0016246 GO:GO:0007286
GO:GO:0005811 GO:GO:0043025 GO:GO:0048477 GO:GO:0003723
GO:GO:0000070 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0002168 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 KO:K11594 HSSP:P09052 EMBL:AY089613
RefSeq:NP_536783.1 UniGene:Dm.7823 ProteinModelPortal:Q9VHP0
SMR:Q9VHP0 IntAct:Q9VHP0 STRING:Q9VHP0 PaxDb:Q9VHP0 PRIDE:Q9VHP0
EnsemblMetazoa:FBtr0081888 GeneID:45826 KEGG:dme:Dmel_CG9748
UCSC:CG9748-RA CTD:100035747 FlyBase:FBgn0263231 InParanoid:Q9VHP0
OMA:TILWVYE OrthoDB:EOG4DNCKG PhylomeDB:Q9VHP0 GenomeRNAi:45826
NextBio:838377 Bgee:Q9VHP0 Uniprot:Q9VHP0
Length = 798
Score = 150 (57.9 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 33/105 (31%), Positives = 50/105 (47%)
Query: 232 IVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMG 291
+++ T K + + + L Q + HG K REEA R F + ++VAT G
Sbjct: 563 LIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAARG 622
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336
+D P V+HVI++ P +E Y GR GR G V ++ N
Sbjct: 623 LDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKN 667
Score = 66 (28.3 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 16 PYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL 50
P QK I II RD + TGSGK+ + +P L
Sbjct: 320 PVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPIL 354
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 167 (63.8 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 93/376 (24%), Positives = 153/376 (40%)
Query: 18 QKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP--LISLMQDQVMSLK- 74
Q++ I ++ +D + + TGSGK+ + LP L AL+ +P +L+ L
Sbjct: 88 QREAIPVALQGKDVIGLAETGSGKTGAFALPIL----HALLENPQRYFALVLTPTRELAF 143
Query: 75 QRGINAEFLGSA----------QTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLK 124
Q G E LGS D Q ++ TP + + LK
Sbjct: 144 QIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQLAKKPHIIIATPGRLVDHLENMKGFNLK 203
Query: 125 AGVCLFAVDEAHCISEWGHDFRLEYKQLDKL-----RTFLLGVPFVALTATATEKVRIDI 179
A + +DEA I DF +E ++ K+ RTFL +T + R +
Sbjct: 204 A-IKYLVMDEADRILNM--DFEVELDKILKVLPRERRTFLFSA---TMTKKVKKLQRASL 257
Query: 180 INSLKLK--NPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMT 237
+ +K++ N Y T+ + LF VK + D + IL +AG S +++C T
Sbjct: 258 KDPVKVEVSNKYQTVEQLQQSYLFIPVK-------YKDVYLVHILNELAG-NSFMIFCST 309
Query: 238 IKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
+ + + L+ LG+ A HGQM R A F ++++T G+D P V
Sbjct: 310 CNNTVKTALMLRALGLAAIPLHGQMSQNKRLAALNKFKAKNRSILISTDVASRGLDIPHV 369
Query: 298 RHVIHYGCPKTLESYYQESGR---CGRDGIASVCWLYYARSNFAKGDFYCGESQT----- 349
V+++ P + Y GR GR G A Y + + + G+ T
Sbjct: 370 DVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYDIELYQRIEHLLGKQLTLYKCE 429
Query: 350 ENQRTAIMESLLAAQR 365
E++ A+ E + AQR
Sbjct: 430 EDEVMALQERVAEAQR 445
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 167 (63.8 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 78/329 (23%), Positives = 149/329 (45%)
Query: 16 PYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV--------TGKTALVVSP---LIS 64
P Q ++ +D + V TGSGK+ + +P + G LV+SP L S
Sbjct: 137 PIQAVAWPYLLSGKDVVGVAETGSGKTFAFGVPAISHLMNDQKKRGIQVLVISPTRELAS 196
Query: 65 LMQDQVMSLKQR-GINA--EFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSK 121
+ D ++ L + G+ + G + + +Q K Q++ TP + ++ +
Sbjct: 197 QIYDNLIVLTDKVGMQCCCVYGGVPKDEQRIQLKKS----QVVVATPGR--LLDLLQEGS 250
Query: 122 LLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIIN 181
+ + V +DEA + E G F + K + + T + TAT ++VR ++ +
Sbjct: 251 VDLSQVNYLVLDEADRMLEKG--FEEDIKNIIR-ETDASKRQTLMFTATWPKEVR-ELAS 306
Query: 182 SLKLKNPY-VTIASFDR----KNLFYGVKVIN-RGQSF-VDELVQEILKSVAGAGSIIVY 234
+ + NP V+I + D+ K + V+V++ RG+ + EL+++ ++++
Sbjct: 307 TF-MNNPIKVSIGNTDQLTANKRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIF 365
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
+ K+ + + LK G HG + + R +A F + +++AT G+D
Sbjct: 366 ALYKKEAARVERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDI 425
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDG 323
P+V+ VI+ P T+E Y GR GR G
Sbjct: 426 PNVKTVINLTFPLTVEDYVHRIGRTGRAG 454
>UNIPROTKB|Q2NL22 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0008380 GO:GO:0017148 GO:GO:0016607 GO:GO:0006397
GO:GO:0045727 GO:GO:0051028 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0035145 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K13025 EMBL:BC111184
IPI:IPI00708766 RefSeq:NP_001039653.1 UniGene:Bt.3377
ProteinModelPortal:Q2NL22 SMR:Q2NL22 PRIDE:Q2NL22
Ensembl:ENSBTAT00000021327 GeneID:515145 KEGG:bta:515145 CTD:9775
InParanoid:Q2NL22 OMA:LALGDFM OrthoDB:EOG4229JV NextBio:20871682
Uniprot:Q2NL22
Length = 411
Score = 165 (63.1 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 79/354 (22%), Positives = 145/354 (40%)
Query: 5 LKKYFGYSVFRP--YQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL------VTGKTA 56
L+ + Y +P Q+ I++II+ RD + +G+GK+ + + L V A
Sbjct: 50 LRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQA 109
Query: 57 LVVSPLISLMQDQVMSLKQRG--INAEF---LGSAQTDSSVQTKAETGYFQLLFMTPEKA 111
L+++P L L G +N + +G ++ K + G ++ TP +
Sbjct: 110 LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIR-KLDYGQ-HVVAGTPGR- 166
Query: 112 CIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATA 171
+ + L + + +DEA + G ++ Y D R V ++AT
Sbjct: 167 -VFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQI-Y---DVYRYLPPATQVVLISATL 221
Query: 172 TEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVK----VINRGQSFVDELVQEILKSVAG 227
++ +++ N + +P + D L G+K + R + D L L
Sbjct: 222 PHEI-LEMTNKF-MTDPIRILVKRDELTL-EGIKQFFVAVEREEWKFDTLCD--LYDTLT 276
Query: 228 AGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA 287
+++C T + V+ +++ +++ + HG M K RE + F RV+++T
Sbjct: 277 ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDV 336
Query: 288 FGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD 341
+ G+D P V +I+Y P E Y GR GR G V NF K D
Sbjct: 337 WARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVA------INFVKND 384
>UNIPROTKB|E2RDZ4 [details] [associations]
symbol:EIF4A3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0017148
"negative regulation of translation" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT CTD:9775
EMBL:AAEX03006203 RefSeq:XP_533130.2 Ensembl:ENSCAFT00000009055
GeneID:475922 KEGG:cfa:475922 NextBio:20851666 Uniprot:E2RDZ4
Length = 411
Score = 165 (63.1 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 79/354 (22%), Positives = 145/354 (40%)
Query: 5 LKKYFGYSVFRP--YQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL------VTGKTA 56
L+ + Y +P Q+ I++II+ RD + +G+GK+ + + L V A
Sbjct: 50 LRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQA 109
Query: 57 LVVSPLISLMQDQVMSLKQRG--INAEF---LGSAQTDSSVQTKAETGYFQLLFMTPEKA 111
L+++P L L G +N + +G ++ K + G ++ TP +
Sbjct: 110 LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIR-KLDYGQ-HVVAGTPGR- 166
Query: 112 CIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATA 171
+ + L + + +DEA + G ++ Y D R V ++AT
Sbjct: 167 -VFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQI-Y---DVYRYLPPATQVVLISATL 221
Query: 172 TEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVK----VINRGQSFVDELVQEILKSVAG 227
++ +++ N + +P + D L G+K + R + D L L
Sbjct: 222 PHEI-LEMTNKF-MTDPIRILVKRDELTL-EGIKQFFVAVEREEWKFDTLCD--LYDTLT 276
Query: 228 AGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA 287
+++C T + V+ +++ +++ + HG M K RE + F RV+++T
Sbjct: 277 ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDV 336
Query: 288 FGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD 341
+ G+D P V +I+Y P E Y GR GR G V NF K D
Sbjct: 337 WARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVA------INFVKND 384
>UNIPROTKB|P38919 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9606 "Homo sapiens" [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0045727 "positive regulation
of translation" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0035145 "exon-exon junction complex"
evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0019221
"cytokine-mediated signaling pathway" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_6900 GO:GO:0000184 GO:GO:0017148
GO:GO:0016607 GO:GO:0019221 TCDB:3.A.18.1.1 EMBL:CH471099
GO:GO:0045727 GO:GO:0051028 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000289 EMBL:AC087741 GO:GO:0035145 PDB:2HYI
PDB:2J0Q PDB:2J0S PDB:2J0U PDB:2XB2 PDB:3EX7 PDBsum:2HYI
PDBsum:2J0Q PDBsum:2J0S PDBsum:2J0U PDBsum:2XB2 PDBsum:3EX7
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989 KO:K13025
OMA:EDWKFDT CTD:9775 OrthoDB:EOG4229JV EMBL:X79538 EMBL:D21853
EMBL:AK290608 EMBL:CR456750 EMBL:BC003662 EMBL:BC004386
EMBL:BC011151 IPI:IPI00009328 PIR:S45142 RefSeq:NP_055555.1
UniGene:Hs.389649 PDB:2HXY PDBsum:2HXY ProteinModelPortal:P38919
SMR:P38919 DIP:DIP-33218N IntAct:P38919 MINT:MINT-1460615
STRING:P38919 PhosphoSite:P38919 DMDM:20532400
REPRODUCTION-2DPAGE:IPI00009328 PaxDb:P38919 PeptideAtlas:P38919
PRIDE:P38919 DNASU:9775 Ensembl:ENST00000269349 GeneID:9775
KEGG:hsa:9775 UCSC:uc002jxs.3 GeneCards:GC17M078109 HGNC:HGNC:18683
HPA:HPA021878 MIM:608546 neXtProt:NX_P38919 PharmGKB:PA162384945
InParanoid:P38919 PhylomeDB:P38919 ChiTaRS:EIF4A3
EvolutionaryTrace:P38919 GenomeRNAi:9775 NextBio:36802 Bgee:P38919
CleanEx:HS_EIF4A3 Genevestigator:P38919 GermOnline:ENSG00000141543
Uniprot:P38919
Length = 411
Score = 165 (63.1 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 79/354 (22%), Positives = 145/354 (40%)
Query: 5 LKKYFGYSVFRP--YQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL------VTGKTA 56
L+ + Y +P Q+ I++II+ RD + +G+GK+ + + L V A
Sbjct: 50 LRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQA 109
Query: 57 LVVSPLISLMQDQVMSLKQRG--INAEF---LGSAQTDSSVQTKAETGYFQLLFMTPEKA 111
L+++P L L G +N + +G ++ K + G ++ TP +
Sbjct: 110 LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIR-KLDYGQ-HVVAGTPGR- 166
Query: 112 CIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATA 171
+ + L + + +DEA + G ++ Y D R V ++AT
Sbjct: 167 -VFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQI-Y---DVYRYLPPATQVVLISATL 221
Query: 172 TEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVK----VINRGQSFVDELVQEILKSVAG 227
++ +++ N + +P + D L G+K + R + D L L
Sbjct: 222 PHEI-LEMTNKF-MTDPIRILVKRDELTL-EGIKQFFVAVEREEWKFDTLCD--LYDTLT 276
Query: 228 AGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA 287
+++C T + V+ +++ +++ + HG M K RE + F RV+++T
Sbjct: 277 ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDV 336
Query: 288 FGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD 341
+ G+D P V +I+Y P E Y GR GR G V NF K D
Sbjct: 337 WARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVA------INFVKND 384
>UNIPROTKB|A6M931 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:DQ351286 RefSeq:NP_001093663.1
UniGene:Ssc.869 ProteinModelPortal:A6M931 SMR:A6M931 PRIDE:A6M931
GeneID:100101926 KEGG:ssc:100101926 Uniprot:A6M931
Length = 411
Score = 165 (63.1 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 79/354 (22%), Positives = 145/354 (40%)
Query: 5 LKKYFGYSVFRP--YQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL------VTGKTA 56
L+ + Y +P Q+ I++II+ RD + +G+GK+ + + L V A
Sbjct: 50 LRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQA 109
Query: 57 LVVSPLISLMQDQVMSLKQRG--INAEF---LGSAQTDSSVQTKAETGYFQLLFMTPEKA 111
L+++P L L G +N + +G ++ K + G ++ TP +
Sbjct: 110 LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIR-KLDYGQ-HVVAGTPGR- 166
Query: 112 CIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATA 171
+ + L + + +DEA + G ++ Y D R V ++AT
Sbjct: 167 -VFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQI-Y---DVYRYLPPATQVVLISATL 221
Query: 172 TEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVK----VINRGQSFVDELVQEILKSVAG 227
++ +++ N + +P + D L G+K + R + D L L
Sbjct: 222 PHEI-LEMTNKF-MTDPIRILVKRDELTL-EGIKQFFVAVEREEWKFDTLCD--LYDTLT 276
Query: 228 AGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA 287
+++C T + V+ +++ +++ + HG M K RE + F RV+++T
Sbjct: 277 ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDV 336
Query: 288 FGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD 341
+ G+D P V +I+Y P E Y GR GR G V NF K D
Sbjct: 337 WARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVA------INFVKND 384
>RGD|1591139 [details] [associations]
symbol:Eif4a3 "eukaryotic translation initiation factor 4A,
isoform 3" species:10116 "Rattus norvegicus" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1591139 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
EMBL:CH473948 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P60842 KO:K13025 CTD:9775 EMBL:BC105875
IPI:IPI00656385 RefSeq:NP_001093628.1 UniGene:Rn.202617
ProteinModelPortal:Q3B8Q2 SMR:Q3B8Q2 PRIDE:Q3B8Q2 GeneID:688288
KEGG:rno:688288 NextBio:736113 Genevestigator:Q3B8Q2 Uniprot:Q3B8Q2
Length = 411
Score = 165 (63.1 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 79/354 (22%), Positives = 145/354 (40%)
Query: 5 LKKYFGYSVFRP--YQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL------VTGKTA 56
L+ + Y +P Q+ I++II+ RD + +G+GK+ + + L V A
Sbjct: 50 LRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQA 109
Query: 57 LVVSPLISLMQDQVMSLKQRG--INAEF---LGSAQTDSSVQTKAETGYFQLLFMTPEKA 111
L+++P L L G +N + +G ++ K + G ++ TP +
Sbjct: 110 LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIR-KLDYGQ-HVVAGTPGR- 166
Query: 112 CIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATA 171
+ + L + + +DEA + G ++ Y D R V ++AT
Sbjct: 167 -VFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQI-Y---DVYRYLPPATQVVLISATL 221
Query: 172 TEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVK----VINRGQSFVDELVQEILKSVAG 227
++ +++ N + +P + D L G+K + R + D L L
Sbjct: 222 PHEI-LEMTNKF-MTDPIRILVKRDELTL-EGIKQFFVAVEREEWKFDTLCD--LYDTLT 276
Query: 228 AGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA 287
+++C T + V+ +++ +++ + HG M K RE + F RV+++T
Sbjct: 277 ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDV 336
Query: 288 FGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD 341
+ G+D P V +I+Y P E Y GR GR G V NF K D
Sbjct: 337 WARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVA------INFVKND 384
>UNIPROTKB|Q5ZM36 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:AJ719548 IPI:IPI00588271
RefSeq:NP_001025820.1 UniGene:Gga.7844 ProteinModelPortal:Q5ZM36
SMR:Q5ZM36 PRIDE:Q5ZM36 GeneID:416704 KEGG:gga:416704
InParanoid:Q5ZM36 NextBio:20820126 Uniprot:Q5ZM36
Length = 412
Score = 165 (63.1 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 79/354 (22%), Positives = 145/354 (40%)
Query: 5 LKKYFGYSVFRP--YQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL------VTGKTA 56
L+ + Y +P Q+ I++II+ RD + +G+GK+ + + L V A
Sbjct: 51 LRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQA 110
Query: 57 LVVSPLISLMQDQVMSLKQRG--INAEF---LGSAQTDSSVQTKAETGYFQLLFMTPEKA 111
L+++P L L G +N + +G ++ K + G ++ TP +
Sbjct: 111 LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIR-KLDYGQ-HVVAGTPGR- 167
Query: 112 CIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATA 171
+ + L + + +DEA + G ++ Y D R V ++AT
Sbjct: 168 -VFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQI-Y---DVYRYLPPATQVVLISATL 222
Query: 172 TEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVK----VINRGQSFVDELVQEILKSVAG 227
++ +++ N + +P + D L G+K + R + D L L
Sbjct: 223 PHEI-LEMTNKF-MTDPIRILVKRDELTL-EGIKQFFVAVEREEWKFDTLCD--LYDTLT 277
Query: 228 AGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA 287
+++C T + V+ +++ +++ + HG M K RE + F RV+++T
Sbjct: 278 ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDV 337
Query: 288 FGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD 341
+ G+D P V +I+Y P E Y GR GR G V NF K D
Sbjct: 338 WARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVA------INFVKND 385
>CGD|CAL0006152 [details] [associations]
symbol:DHH1 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0030996 "cell cycle arrest
in response to nitrogen starvation" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IEA] [GO:0000753 "cell
morphogenesis involved in conjugation with cellular fusion"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0000290 "deadenylation-dependent
decapping of nuclear-transcribed mRNA" evidence=IEA] [GO:0031142
"induction of conjugation upon nitrogen starvation" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0006152 GO:GO:0005524 GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 GO:GO:0000932 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037 eggNOG:COG0513
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_718704.1
RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3 SMR:Q5AAW3
GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 167 (63.8 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 84/331 (25%), Positives = 143/331 (43%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSL-----CYQL-PPLVTGKTALVVSPL- 62
G+ P Q++ I + RD L G+GK+ C QL P + AL++ P
Sbjct: 49 GFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQLVKPKLNKVQALILVPTR 108
Query: 63 -ISLMQDQVMSLKQRGINAEFL----GSAQTDSSVQTKAETGYFQLLFMTPEKACIIPIS 117
++L QV+ + + + + G++ D V+ +L TP + ++ ++
Sbjct: 109 ELALQTSQVVRTLGKHVGTQCMVTTGGTSLRDDIVRLHDPV---HILVGTPGR--VLDLA 163
Query: 118 FWSKLLKAGVC-LFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
K++ C LF +DEA + +F+ +Q+ L F AL +AT +
Sbjct: 164 A-RKVVDLSECPLFVMDEADKMLS--REFKGIIEQI--LEFFPPNRQ--ALLFSATFPLA 216
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQ----EILKSVAGAGSII 232
+ L PY I D L K I++ +FV+E + L S I
Sbjct: 217 VKSFMDKHLTKPY-EINLMDELTL----KGISQFYAFVEEKQKLHCLNTLFSKLQINQSI 271
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
++C + VE ++K + +LG H +M +AR + F + ++R +V + GI
Sbjct: 272 IFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVCSDLLTRGI 331
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
D V VI++ PKT E+Y GR GR G
Sbjct: 332 DIQAVNVVINFDFPKTAETYLHRIGRSGRFG 362
>UNIPROTKB|Q5AAW3 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:237561 "Candida albicans SC5314" [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0006152 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037
eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_718704.1 RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3
SMR:Q5AAW3 GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 167 (63.8 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 84/331 (25%), Positives = 143/331 (43%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSL-----CYQL-PPLVTGKTALVVSPL- 62
G+ P Q++ I + RD L G+GK+ C QL P + AL++ P
Sbjct: 49 GFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQLVKPKLNKVQALILVPTR 108
Query: 63 -ISLMQDQVMSLKQRGINAEFL----GSAQTDSSVQTKAETGYFQLLFMTPEKACIIPIS 117
++L QV+ + + + + G++ D V+ +L TP + ++ ++
Sbjct: 109 ELALQTSQVVRTLGKHVGTQCMVTTGGTSLRDDIVRLHDPV---HILVGTPGR--VLDLA 163
Query: 118 FWSKLLKAGVC-LFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
K++ C LF +DEA + +F+ +Q+ L F AL +AT +
Sbjct: 164 A-RKVVDLSECPLFVMDEADKMLS--REFKGIIEQI--LEFFPPNRQ--ALLFSATFPLA 216
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQ----EILKSVAGAGSII 232
+ L PY I D L K I++ +FV+E + L S I
Sbjct: 217 VKSFMDKHLTKPY-EINLMDELTL----KGISQFYAFVEEKQKLHCLNTLFSKLQINQSI 271
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
++C + VE ++K + +LG H +M +AR + F + ++R +V + GI
Sbjct: 272 IFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGKVRNLVCSDLLTRGI 331
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
D V VI++ PKT E+Y GR GR G
Sbjct: 332 DIQAVNVVINFDFPKTAETYLHRIGRSGRFG 362
>UNIPROTKB|B2C6E9 [details] [associations]
symbol:B2C6E9 "VASA" species:9337 "Trichosurus vulpecula"
[GO:0033391 "chromatoid body" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 EMBL:EU278597 Uniprot:B2C6E9
Length = 704
Score = 142 (55.0 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 38/118 (32%), Positives = 60/118 (50%)
Query: 206 VINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSK 265
V+ GQ E + EIL+++ G +V+ T K + I+ L Q + + HG +
Sbjct: 499 VLQVGQYSKREKLVEILRNI-GEERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQR 557
Query: 266 AREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
RE+A F + V+VAT G+D +V+HVI++ P T++ Y GR GR G
Sbjct: 558 EREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCG 615
Score = 72 (30.4 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL 50
GY+ P QK I I+ RD + TGSGK+ + LP L
Sbjct: 285 GYTKLTPVQKYGIPIILAGRDLMACAQTGSGKTAAFLLPIL 325
>SGD|S000002319 [details] [associations]
symbol:DHH1 "Cytoplasmic DExD/H-box helicase, stimulates mRNA
decapping" species:4932 "Saccharomyces cerevisiae" [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=IGI;ISS]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002319 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 EMBL:BK006938 GO:GO:0003723
GO:GO:0000753 GO:GO:0000932 EMBL:Z67750 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0034063 GO:GO:0008026 eggNOG:COG0513
GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797 KO:K12614
OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000290 OrthoDB:EOG4QJVWF EMBL:X66057 EMBL:Z74208 PIR:S31229
RefSeq:NP_010121.1 PDB:1S2M PDBsum:1S2M ProteinModelPortal:P39517
SMR:P39517 DIP:DIP-1243N IntAct:P39517 MINT:MINT-385061
STRING:P39517 PaxDb:P39517 PeptideAtlas:P39517 EnsemblFungi:YDL160C
GeneID:851394 KEGG:sce:YDL160C CYGD:YDL160c
EvolutionaryTrace:P39517 NextBio:968552 Genevestigator:P39517
GermOnline:YDL160C Uniprot:P39517
Length = 506
Score = 166 (63.5 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 85/330 (25%), Positives = 139/330 (42%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVTGKT------ALVVSPL- 62
G+ P Q++ I I RD L G+GK+ + +P L K AL++ P
Sbjct: 65 GFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTR 124
Query: 63 -ISLMQDQVMSL--KQRGINAEFL-GSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
++L QV+ K GI+ G + ET + +L TP + ++ ++
Sbjct: 125 ELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVH--ILVGTPGR--VLDLAS 180
Query: 119 WSKLLKAGVC-LFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
K+ C LF +DEA + DF+ +Q+ +FL +L +AT + +
Sbjct: 181 -RKVADLSDCSLFIMDEADKMLS--RDFKTIIEQI---LSFLPPT-HQSLLFSATFPLTV 233
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQ----EILKSVAGAGSIIV 233
L PY I + L K I + +FV+E + L S I+
Sbjct: 234 KEFMVKHLHKPY-EINLMEELTL----KGITQYYAFVEERQKLHCLNTLFSKLQINQAII 288
Query: 234 YCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGID 293
+C + VE ++K + LG H +M + R + F + ++R +V + GID
Sbjct: 289 FCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGID 348
Query: 294 KPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
V VI++ PKT E+Y GR GR G
Sbjct: 349 IQAVNVVINFDFPKTAETYLHRIGRSGRFG 378
>UNIPROTKB|F1SUG7 [details] [associations]
symbol:DDX21 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043330 "response to exogenous dsRNA" evidence=IEA]
[GO:0009615 "response to virus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012562 Pfam:PF00270 Pfam:PF00271
Pfam:PF08152 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0009615 GO:GO:0003725 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0043330
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00680000100003
OMA:EILCVAY EMBL:CT737244 EMBL:CU468175 Ensembl:ENSSSCT00000011217
Uniprot:F1SUG7
Length = 855
Score = 162 (62.1 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 39/119 (32%), Positives = 65/119 (54%)
Query: 217 LVQEILKSVAG-AGSIIVYCMTIKDVEEISK--ALKQLGVKAGTYHGQMGSKAREEAHRL 273
++ ++++ +G G I++C T K+ +E+S+ A++Q A + HG + K RE +
Sbjct: 498 VIGDVIRVYSGYQGRTIIFCETKKEAQELSQNAAVRQ---DAQSLHGDIPQKQREITLKG 554
Query: 274 FIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYY 332
F + V+VAT G+D P+V V+ PK +ESY SGR GR G +C +Y
Sbjct: 555 FRNGDFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGICICFY 613
Score = 52 (23.4 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP 48
L K G + P Q + +D + TG+GK+ + +P
Sbjct: 272 LLKARGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIP 315
Score = 48 (22.0 bits), Expect = 6.4e-09, Sum P(2) = 6.4e-09
Identities = 19/50 (38%), Positives = 23/50 (46%)
Query: 39 SGKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQT 88
SGK L Q TGKT PLI +Q ++ K RG + L A T
Sbjct: 294 SGKDLIAQART-GTGKTFSFAIPLIEKLQGELQDRK-RGRAPQVLVLAPT 341
Score = 37 (18.1 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 105 FMTPEKACIIPISFWSKLLKAGVCLFAVD 133
F++ II ISF + L A V +F+VD
Sbjct: 219 FLSNGANMIIIISFSNLDLPAEVFVFSVD 247
>UNIPROTKB|G3MYF0 [details] [associations]
symbol:LOC100300937 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:GLKSICI EMBL:DAAA02074437
Ensembl:ENSBTAT00000065115 Uniprot:G3MYF0
Length = 608
Score = 167 (63.8 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 77/333 (23%), Positives = 142/333 (42%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV------------TGKTAL 57
G+ P Q I++ D + + TG+GK+L Y +P + G L
Sbjct: 220 GFQKPTPIQSQSWPIILQGIDLIGIAQTGTGKTLSYLMPGFIHIHSQPVSRKQRNGPGML 279
Query: 58 VVSPLISL-MQDQVMSLKQ--RGINAEFL-GSAQTDSSVQTKAETGYFQLLFMTPEKACI 113
V++P L +Q + K +G+ + + G +Q + G ++ TP +
Sbjct: 280 VLTPTRELALQVEAECSKYLYKGLKSVCIYGGGNRKGQIQDVTK-GV-DIIIATPGRLND 337
Query: 114 IPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATE 173
+ ++ + L + +DEA + + G + ++ LD +R V TA+ +
Sbjct: 338 LQMNNFVNL--RSITYLVLDEADKMLDLGFEHQIMKILLD-VRP---DRQTVMTTASWPD 391
Query: 174 KVRIDIINSLKLKNPYVT-IASFDRKNLFYGVK--VINRGQSFVDELVQEILKSVAGAGS 230
R + S LK P + + + D + VK +I + LV+E L+S++
Sbjct: 392 STR-RLAQSY-LKQPMIVYVGTLDLVTV-NTVKQNIIVTTEEEKRSLVKEFLQSLSPKDK 448
Query: 231 IIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGM 290
+IV+ +++S L G+ + HG R++A F +++++AT
Sbjct: 449 VIVFVSRKLVADDLSSDLSIQGIPVQSLHGDREQSDRDQALEDFRTGRVKILIATDLAAR 508
Query: 291 GIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
G+D DV HV +Y P+ +E Y GR GR G
Sbjct: 509 GLDVSDVTHVYNYNFPRNIEEYVHRVGRTGRAG 541
>UNIPROTKB|E1BSE5 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:AADN02041229
EMBL:AADN02041230 IPI:IPI00819993 Ensembl:ENSGALT00000013903
ArrayExpress:E1BSE5 Uniprot:E1BSE5
Length = 402
Score = 164 (62.8 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 81/349 (23%), Positives = 141/349 (40%)
Query: 5 LKKYFGYSVFRP--YQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL------VTGKTA 56
L+ + Y +P Q+ I++II+ RD + +G+GK+ + + L V A
Sbjct: 51 LRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQA 110
Query: 57 LVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPI 116
L+++P L SL G T SS + + L + E I
Sbjct: 111 LILAPTRELAVQIQKSLLATGEVPVPPPVKCTVSSWEQCRLACFLSLFILQSEIDMIRRR 170
Query: 117 SFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
S ++ +K + +DEA + G ++ Y D R V ++AT ++
Sbjct: 171 SLRTRAIK----MLVLDEADEMLNKGFKEQI-Y---DVYRYLPPATQVVLISATLPHEI- 221
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVK----VINRGQSFVDELVQEILKSVAGAGSII 232
+++ N + +P + D L G+K + R + D L L +
Sbjct: 222 LEMTNKF-MTDPIRILVKRDELTL-EGIKQFFVAVEREEWKFDTLCD--LYDTLTITQAV 277
Query: 233 VYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 292
++C T + V+ +++ +++ + HG M K RE + F RV+++T + G+
Sbjct: 278 IFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGL 337
Query: 293 DKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGD 341
D P V +I+Y P E Y GR GR G V NF K D
Sbjct: 338 DVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVA------INFVKND 380
>ZFIN|ZDB-GENE-071022-2 [details] [associations]
symbol:ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
10" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-071022-2 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 EMBL:CR450711 IPI:IPI00898518
Ensembl:ENSDART00000125785 ArrayExpress:F1QMM9 Bgee:F1QMM9
Uniprot:F1QMM9
Length = 875
Score = 169 (64.5 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 83/324 (25%), Positives = 137/324 (42%)
Query: 18 QKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL----------VTGKTALVVSPLISLMQ 67
Q+ I ++ RD L TGSGK+L + +P L + G AL++SP L
Sbjct: 97 QRQTIGFALQGRDVLGAAKTGSGKTLAFLIPVLECLYREQWTAMDGLGALIISPTRELAY 156
Query: 68 DQVMSLKQRGINAEF-LGSAQTDSSVQTKAETGY-FQLLFMTPEKACIIPISFWSKLLKA 125
L++ G N EF G ++ ++E + ++ TP + + + + +
Sbjct: 157 QTFEVLRKVGKNHEFSAGLVIGGKDLKDESEKIHRTNIIICTPGRL-LQHMDETATFHAS 215
Query: 126 GVCLFAVDEAHCISEWGHDFRLE--YKQLDKLRTFLLGVPFVALTATATEKVRIDIINSL 183
+ + +DEA I + G L + L K R LL +AT T V+ D+ L
Sbjct: 216 DLHMLVLDEADRILDMGFADTLNAIVENLPKSRQTLL------FSATQTRSVK-DLAR-L 267
Query: 184 KLKNP-YVTI---ASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIK 239
LK+P YV + A F V+ V+ ++ L+S IIV+ K
Sbjct: 268 SLKDPEYVWVHEQAKFSTPATLEQNYVVCELHQKVN-MLYSFLRSHLQK-KIIVFFACCK 325
Query: 240 DVEEISKALKQL--GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDV 297
+V+ + + +L G+ HG+ R E + F+R V+ AT G+D P V
Sbjct: 326 EVQYLFRIFCRLRPGISVLALHGKQQQMKRVEVYNDFVRKTSAVLFATDIAARGLDFPAV 385
Query: 298 RHVIHYGCPKTLESYYQESGRCGR 321
V+ + CP+ +Y GR R
Sbjct: 386 NWVLQFDCPEDANTYIHRVGRTAR 409
>WB|WBGene00017162 [details] [associations]
symbol:ddx-23 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0040021 "hermaphrodite germ-line sex determination"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0002119 GO:GO:0040011
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0048589 EMBL:FO080705 GO:GO:0010172 GO:GO:0040020
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 HSSP:Q58083 HOGENOM:HOG000268796
OMA:PIRNWKE GO:GO:0040021 RefSeq:NP_498260.2
ProteinModelPortal:Q95QN2 SMR:Q95QN2 STRING:Q95QN2 PaxDb:Q95QN2
EnsemblMetazoa:F01F1.7 GeneID:175818 KEGG:cel:CELE_F01F1.7
CTD:175818 WormBase:F01F1.7 InParanoid:Q95QN2 NextBio:889790
Uniprot:Q95QN2
Length = 730
Score = 140 (54.3 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 34/93 (36%), Positives = 46/93 (49%)
Query: 231 IIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGM 290
II++ K + +SK L +LG K HG G RE A + ++VAT G
Sbjct: 576 IIIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQREYALQALKEGTSDILVATDVAGR 635
Query: 291 GIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
GID DV V++Y K++E Y GR GR G
Sbjct: 636 GIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAG 668
Score = 74 (31.1 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 7 KYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV 51
K GY P Q+ I ++ RD + V TGSGK+ + LP LV
Sbjct: 317 KEIGYLEPTPIQRQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLV 361
>UNIPROTKB|F1MYC6 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0032880 "regulation of protein localization"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000237 "leptotene" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0032880 GO:GO:0007283 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 IPI:IPI00689085 UniGene:Bt.35994
OMA:RDAGESN GO:GO:0000237 EMBL:DAAA02050339 EMBL:DAAA02050337
EMBL:DAAA02050338 EMBL:JX437185 Ensembl:ENSBTAT00000011682
Uniprot:F1MYC6
Length = 729
Score = 168 (64.2 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 87/336 (25%), Positives = 142/336 (42%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV----TGKTA--------- 56
GY+ P QK I I RD + TGSGK+ + LP L G TA
Sbjct: 309 GYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEP 368
Query: 57 --LVVSPLISLMQDQVMSLKQRG----INAEFL-GSAQTDSSVQTKAETGYFQLLFMTPE 109
++V+P L+ + ++ + A + G Q S++ + G +L TP
Sbjct: 369 ECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQ-GC-NILCATPG 426
Query: 110 KACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTA 169
+ ++ + K+ V +DEA + + G F E K+L L
Sbjct: 427 R--LMDVIGKEKIGLRQVKYLVLDEADRMLDMG--FGPEMKKLISCPGMPSKEQRQTLMF 482
Query: 170 TATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVK--VINRGQSFVDELVQEILKSVAG 227
+AT I + LK+ Y+ +A V+ ++ GQ E + EIL+++ G
Sbjct: 483 SATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKREKLVEILRNI-G 541
Query: 228 AGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA 287
+V+ T K + I+ L Q + + HG + RE+A F + V+VAT
Sbjct: 542 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 601
Query: 288 FGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
G+D +V+HVI++ P T++ Y GR GR G
Sbjct: 602 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCG 637
Score = 138 (53.6 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 38/123 (30%), Positives = 62/123 (50%)
Query: 206 VINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSK 265
++ GQ E + EIL+++ G +V+ T K + I+ L Q + + HG +
Sbjct: 521 ILQVGQYSKREKLVEILRNI-GDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQR 579
Query: 266 AREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQE---SGRCGRD 322
RE+A F + V+VAT G+D +V+HVI++ P T++ Y +GRCG
Sbjct: 580 EREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNT 639
Query: 323 GIA 325
G A
Sbjct: 640 GRA 642
>UNIPROTKB|Q5W5U4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 EMBL:AF541971
IPI:IPI00689085 RefSeq:NP_001007820.1 UniGene:Bt.35994
ProteinModelPortal:Q5W5U4 SMR:Q5W5U4 STRING:Q5W5U4 PRIDE:Q5W5U4
GeneID:493725 KEGG:bta:493725 CTD:54514 InParanoid:Q5W5U4 KO:K13982
OrthoDB:EOG4W6NVF NextBio:20865468 GO:GO:0071547 Uniprot:Q5W5U4
Length = 729
Score = 168 (64.2 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 87/336 (25%), Positives = 142/336 (42%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV----TGKTA--------- 56
GY+ P QK I I RD + TGSGK+ + LP L G TA
Sbjct: 309 GYTKLTPVQKYSIPIIQGGRDLMACAQTGSGKTAAFLLPILAHMMRDGITASRFKELQEP 368
Query: 57 --LVVSPLISLMQDQVMSLKQRG----INAEFL-GSAQTDSSVQTKAETGYFQLLFMTPE 109
++V+P L+ + ++ + A + G Q S++ + G +L TP
Sbjct: 369 ECIIVAPTRELINQIYLEARKFSFGTCVRAVVIYGGTQLGHSIRQIVQ-GC-NILCATPG 426
Query: 110 KACIIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTA 169
+ ++ + K+ V +DEA + + G F E K+L L
Sbjct: 427 R--LMDVIGKEKIGLRQVKYLVLDEADRMLDMG--FGPEMKKLISCPGMPSKEQRQTLMF 482
Query: 170 TATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVK--VINRGQSFVDELVQEILKSVAG 227
+AT I + LK+ Y+ +A V+ ++ GQ E + EIL+++ G
Sbjct: 483 SATFPEEIQRLAGEFLKSNYLFVAVGQVGGACRDVQQTILQVGQYSKREKLVEILRNI-G 541
Query: 228 AGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMA 287
+V+ T K + I+ L Q + + HG + RE+A F + V+VAT
Sbjct: 542 DERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQREREQALGDFRCGKCPVLVATSV 601
Query: 288 FGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
G+D +V+HVI++ P T++ Y GR GR G
Sbjct: 602 AARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCG 637
Score = 138 (53.6 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 38/123 (30%), Positives = 62/123 (50%)
Query: 206 VINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSK 265
++ GQ E + EIL+++ G +V+ T K + I+ L Q + + HG +
Sbjct: 521 ILQVGQYSKREKLVEILRNI-GDERTMVFVETKKKADFIATFLCQEKISTTSIHGDREQR 579
Query: 266 AREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQE---SGRCGRD 322
RE+A F + V+VAT G+D +V+HVI++ P T++ Y +GRCG
Sbjct: 580 EREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTGRCGNT 639
Query: 323 GIA 325
G A
Sbjct: 640 GRA 642
>FB|FBgn0032690 [details] [associations]
symbol:CG10333 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5
snRNP" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
GO:GO:0022008 GO:GO:0005682 GO:GO:0003676 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
OMA:PIRNWKE FlyBase:FBgn0032690 EMBL:BT021222 RefSeq:NP_609888.2
UniGene:Dm.456 SMR:Q9VJ74 STRING:Q9VJ74 EnsemblMetazoa:FBtr0081072
GeneID:35112 KEGG:dme:Dmel_CG10333 UCSC:CG10333-RA
InParanoid:Q9VJ74 GenomeRNAi:35112 NextBio:791924 Uniprot:Q9VJ74
Length = 822
Score = 143 (55.4 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 47/155 (30%), Positives = 70/155 (45%)
Query: 170 TATEKVRIDIINSLKLKNPY-VTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGA 228
TAT ++ + L+ P V I S + V G++ + + EIL
Sbjct: 608 TATMPPAVERLARTYLRRPATVYIGSVGKPTERTEQIVYMMGENDKRKKLMEILSRKIDP 667
Query: 229 GSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAF 288
+I++ K + ++K L++LG + T HG G + RE A ++VAT
Sbjct: 668 -PVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQREYALAALKSGAKDILVATDVA 726
Query: 289 GMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
G GID DV VI+Y KT+E Y GR GR G
Sbjct: 727 GRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRAG 761
Score = 72 (30.4 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL 50
GY P Q+ I ++ RD + V TGSGK+L + +P L
Sbjct: 413 GYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTLAFLIPLL 453
>ZFIN|ZDB-GENE-030131-1927 [details] [associations]
symbol:ddx41 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490
ZFIN:ZDB-GENE-030131-1927 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
EMBL:CABZ01072950 EMBL:CABZ01072951 EMBL:CABZ01072952
IPI:IPI00961669 Ensembl:ENSDART00000061987 Bgee:F1QQ09
Uniprot:F1QQ09
Length = 473
Score = 145 (56.1 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 60/244 (24%), Positives = 106/244 (43%)
Query: 121 KLLKAGVCLF-AVDEAHCISEWG--HDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
K++ +C + A+DEA + + G D R + R LL +AT +K++
Sbjct: 182 KMVSLDICRYLALDEADRMIDMGFEEDIRTIFSYFKGQRQTLL------FSATMPKKIQ- 234
Query: 178 DIINSLKLKNPYVTIASFDRKNL--FYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYC 235
+ S +K + + +L V+ + V L E L+ ++++
Sbjct: 235 NFAKSALVKPITINVGRAGAASLDVIQEVEYVKEEAKMVYLL--ECLQKTPPP--VLIFA 290
Query: 236 MTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKP 295
DV+ I + L GV+A HG + R +A F + V+VAT G+D P
Sbjct: 291 EKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFKEGKKDVLVATDVASKGLDFP 350
Query: 296 DVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTENQRTA 355
++HV++Y P+ +E+Y GR GR G + A + KG C ES + +
Sbjct: 351 AIQHVVNYDMPEEIENYVHRIGRTGRSGKTGI-----ATTFINKG---CDESVLMDLKAL 402
Query: 356 IMES 359
++E+
Sbjct: 403 LVEA 406
Score = 63 (27.2 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 16 PYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP 48
P Q I I+ RD + + TGSGK+L + LP
Sbjct: 62 PIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLP 94
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 166 (63.5 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 77/325 (23%), Positives = 144/325 (44%)
Query: 29 RDCLVVMATGSGKSLCYQLPPLVTGKTALVVSP-----LISLMQDQVMSLKQRGINAEFL 83
RD + + TGSGK+L Y LP +V +++P ++ L + ++++ + ++F
Sbjct: 178 RDVVGIAETGSGKTLSYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFG 237
Query: 84 GSAQT-DSSVQTKAETGYFQLLFMTPE-KACIIPISFWSKLLKAG------VCLFAVDEA 135
S++ ++ V G Q+ ++ + CI +L+AG V +DEA
Sbjct: 238 KSSRIRNTCVYGGVPKGP-QIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEA 296
Query: 136 HCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIASF 195
+ + G + ++ K + ++R + A ++ D +N+ V I S
Sbjct: 297 DRMLDMGFEPQIR-KIISQIRPDRQTCMWSATWPKEVRQLASDFLNNYI----QVNIGSM 351
Query: 196 D---RKNLFYGVKVINRGQSFVDELVQEILKSVAGAGS-IIVYCMTIKDVEEISKALKQL 251
D + V+VI+ + D +++ + K + G+ +V+ T + +EI++ L+Q
Sbjct: 352 DLSANHRITQIVEVISEFEKR-DRMIKHLEKIMENRGNKCLVFTGTKRIADEITRFLRQD 410
Query: 252 GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLES 311
G A + HG + R+ F + +MVAT GID D+ HVI+Y P E
Sbjct: 411 GWPALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVINYDYPNNSED 470
Query: 312 YYQESGRCGRDGIASVCWLYYARSN 336
Y GR GR G ++ N
Sbjct: 471 YVHRIGRTGRAGAKGTAITFFTTDN 495
>UNIPROTKB|A8MTP9 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000242486
HOVERGEN:HBG051332 EMBL:AC091199 HGNC:HGNC:20038
PharmGKB:PA134904836 ChiTaRS:DDX52 NextBio:42007 IPI:IPI00394982
ProteinModelPortal:A8MTP9 SMR:A8MTP9 STRING:A8MTP9 PRIDE:A8MTP9
Ensembl:ENST00000394367 ArrayExpress:A8MTP9 Bgee:A8MTP9
Uniprot:A8MTP9
Length = 491
Score = 165 (63.1 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 74/332 (22%), Positives = 135/332 (40%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP-------PLVTGKTALVVSP- 61
G+ + P Q I ++ R+ L TGSGK+L + +P P G AL++SP
Sbjct: 76 GFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPT 135
Query: 62 --LISLMQDQVMSLKQ-RGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
L S + +++ + + G + A + + F +L TP + +
Sbjct: 136 RELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQD 195
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHD-FRLEYKQL------DKLRTFLLGVPFVALTATA 171
+ A V VDE+ + E G FR + + K+R + F A
Sbjct: 196 PPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATF-AYDVEQ 254
Query: 172 TEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSI 231
K+ +D + S+ + + + +++ LF G + G+ ++E++K +
Sbjct: 255 WCKLNLDNVISVSIGARNSAVETVEQELLFVGSET---GKLLA---MRELVKKGFNP-PV 307
Query: 232 IVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMG 291
+V+ +I+ +E+ L G+ H + + R+ F +I V++ T G
Sbjct: 308 LVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARG 367
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
ID V VI+Y P + Y GR GR G
Sbjct: 368 IDFKGVNLVINYDFPTSSVEYIHRIGRTGRAG 399
>MGI|MGI:1925644 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1925644 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:CH466556 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AK080767 EMBL:AK133545 EMBL:AL645615 EMBL:BC029094
IPI:IPI00336965 RefSeq:NP_084372.2 UniGene:Mm.280544
ProteinModelPortal:Q8K301 SMR:Q8K301 STRING:Q8K301
PhosphoSite:Q8K301 PaxDb:Q8K301 PRIDE:Q8K301
Ensembl:ENSMUST00000049257 GeneID:78394 KEGG:mmu:78394
InParanoid:Q3UZY9 NextBio:348796 Bgee:Q8K301 CleanEx:MM_DDX52
Genevestigator:Q8K301 GermOnline:ENSMUSG00000020677 Uniprot:Q8K301
Length = 598
Score = 166 (63.5 bits), Expect = 3.1e-09, P = 3.1e-09
Identities = 78/333 (23%), Positives = 137/333 (41%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV-----TGK--TALVVSP- 61
G+ V P Q I ++ R+ L TGSGK+L + +P L+ T K ALV+SP
Sbjct: 185 GFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPTNKGFRALVISPT 244
Query: 62 --LISLMQDQVMSLKQ-RGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
L S + +++ + + G + A + + F +L TP + +
Sbjct: 245 RELASQIHRELIKISEGTGFRIHMIHKAAIAAKKFGPKSSKKFDILVTTPNRLIYLLKQD 304
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHD-FRLEYKQL------DKLRTFLLGVPFVALTATA 171
+ V VDE+ + E G FR + + K+R + F A
Sbjct: 305 PPGIDLTNVEWLVVDESDKLFEDGKTGFREQLASIFLACTSPKVRRAMFSATF-AYDVEQ 363
Query: 172 TEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSF-VDELVQEILKSVAGAGS 230
K+ +D + S+ + + + +++ LF G + G+ + ELV++ K
Sbjct: 364 WCKLNLDNVVSVSIGARNSAVETVEQELLFVGSET---GKLLAMRELVKKGFKP-----P 415
Query: 231 IIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGM 290
++V+ +I+ +E+ L G+ H + + R+ F +I V++ T
Sbjct: 416 VLVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLAR 475
Query: 291 GIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
GID V VI+Y P + Y GR GR G
Sbjct: 476 GIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAG 508
>RGD|1309586 [details] [associations]
symbol:RGD1309586 "similar to probable ATP-dependent RNA
helicase - mouse" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309586 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 OMA:HIVQECD
OrthoDB:EOG4S7JPR EMBL:CH473985 IPI:IPI00954695
RefSeq:NP_001102328.1 UniGene:Rn.218622 Ensembl:ENSRNOT00000003378
GeneID:364073 KEGG:rno:364073 UCSC:RGD:1309586 CTD:364073
NextBio:684798 Uniprot:D3ZN21
Length = 659
Score = 138 (53.6 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 32/117 (27%), Positives = 53/117 (45%)
Query: 220 EILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEI 279
++L + I+V+ T K + + L G + HG + REEA F +
Sbjct: 431 DLLNATGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 490
Query: 280 RVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336
++VAT G+D +V+HVI++ P +E Y GR GR G + ++ N
Sbjct: 491 PILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERN 547
Score = 74 (31.1 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 16 PYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL 50
P QK I I EKRD + TGSGK+ + LP L
Sbjct: 203 PVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 237
>MGI|MGI:91842 [details] [associations]
symbol:D1Pas1 "DNA segment, Chr 1, Pasteur Institute 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:91842
GO:GO:0007275 GO:GO:0005524 GO:GO:0030154 GO:GO:0003677
GO:GO:0007283 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
KO:K11594 HOVERGEN:HBG015893 EMBL:J04847 EMBL:AK029542
IPI:IPI00133708 PIR:A32378 RefSeq:NP_149068.1 UniGene:Mm.108054
ProteinModelPortal:P16381 SMR:P16381 IntAct:P16381 STRING:P16381
PhosphoSite:P16381 PaxDb:P16381 PRIDE:P16381
Ensembl:ENSMUST00000045108 GeneID:110957 KEGG:mmu:110957 CTD:110957
InParanoid:P16381 OMA:HIVQECD OrthoDB:EOG4S7JPR NextBio:365019
Bgee:P16381 CleanEx:MM_D1PAS1 Genevestigator:P16381
GermOnline:ENSMUSG00000039224 Uniprot:P16381
Length = 660
Score = 138 (53.6 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 32/117 (27%), Positives = 53/117 (45%)
Query: 220 EILKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEI 279
++L + I+V+ T K + + L G + HG + REEA F +
Sbjct: 432 DLLNATGKDSLILVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKS 491
Query: 280 RVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336
++VAT G+D +V+HVI++ P +E Y GR GR G + ++ N
Sbjct: 492 PILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERN 548
Score = 74 (31.1 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 16 PYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL 50
P QK I I EKRD + TGSGK+ + LP L
Sbjct: 204 PVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 238
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 133 (51.9 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 47/164 (28%), Positives = 76/164 (46%)
Query: 168 TATATEKV----RIDIINSLKL--KNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEI 221
+AT T KV R + +++ + + T+ + ++ LF+ K +++ LV E+
Sbjct: 227 SATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYLFFPFK---HKDTYLVYLVNEL 283
Query: 222 LKSVAGAGSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRV 281
AG SII++ T+ D + ++ L+ LG A HGQ+ R A F
Sbjct: 284 ----AG-NSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLSQSNRLGALNKFKSGARST 338
Query: 282 MVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIA 325
+VAT G+D P V VI+Y P ++Y GR R G A
Sbjct: 339 LVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRA 382
Score = 75 (31.5 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP 48
G+ P Q++ I ++ KRD + + TGSGK+ + LP
Sbjct: 65 GFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALP 103
>UNIPROTKB|E1BII7 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
Length = 647
Score = 166 (63.5 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 85/376 (22%), Positives = 160/376 (42%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP--------PLV----TGKTAL 57
G+ P Q I++ D + V TG+GK+L Y +P P++ G L
Sbjct: 260 GFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHIDSQPVLQRARNGPGML 319
Query: 58 VVSPL--ISLMQDQVMS-LKQRGINAEFL-GSAQTDSSVQTKAETGYFQLLFMTPEKACI 113
V++P ++L D S RG+ + + G D ++ ++ ++ TP +
Sbjct: 320 VLTPTRELALQVDAECSEYSYRGLKSVCIYGGGDRDGQIKDLSKGA--DIIIATPGRLHD 377
Query: 114 IPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATE 173
+ ++ + LK+ + +DEA + + G + ++ LD +R V +AT
Sbjct: 378 LQMNNFV-YLKS-ITYLVLDEADKMLDMGFEPQIMKILLD-VRP---DRQTVMTSATWPY 431
Query: 174 KVRIDIINSLKLKNPYVT-IASFDRKNLFYGVK-VINRGQSFVDELVQEILKSVAGAGSI 231
VR + S LK P + + + D + + +I + +Q + S++ +
Sbjct: 432 AVR-RLAQSY-LKEPMIVYVGTLDLVAVSTVTQNIIVTTEDEKRSHIQAFIDSMSPKDKV 489
Query: 232 IVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMG 291
I++ + +S L + + HG RE A + F ++R+++AT G
Sbjct: 490 IIFVSRKAVADHLSSDLGIRRISVESLHGNREQSDRERALKSFKTGKVRILIATDLASRG 549
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFAKGDFYCGESQTEN 351
+D DV HV +Y P+ +E Y GR GR G V R+++ + N
Sbjct: 550 LDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRNDWKIAGELINILERAN 609
Query: 352 QRTAIMESLLA-AQRY 366
Q ++ E L++ A+RY
Sbjct: 610 Q--SVPEDLVSMAERY 623
>DICTYBASE|DDB_G0281925 [details] [associations]
symbol:DDB_G0281925 "DEAD/DEAH box helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
Uniprot:Q54T87
Length = 586
Score = 165 (63.1 bits), Expect = 3.9e-09, P = 3.9e-09
Identities = 82/333 (24%), Positives = 141/333 (42%)
Query: 25 IIEKRDCLVVMATGSGKSLCYQLPPLVT----------GKT--ALVVSPLISLMQ--DQV 70
I+ D + + ATGSGK+L + LP L+ G T LV++P L Q ++V
Sbjct: 144 ILGGNDLVGLAATGSGKTLAFLLPALLKIISLPKRPSYGATPLVLVMAPTRELAQQIEEV 203
Query: 71 MSLKQRGINAEFLGSAQTDSSV-QTKAETGYFQLLFMTPEKACIIPISFWSKLLKAGVCL 129
RG + L + + Q++ ++ TP + K + V
Sbjct: 204 CKTSIRGTSIRQLCAYGGLGKIDQSRILRNGVDIVIGTPGRLN----DLLRKHHLSSVQY 259
Query: 130 FAVDEAHCISEWGHDFRLE--YKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKN 187
+DEA + + G ++E Q+ K R L+ +AT ++V++ + S LK+
Sbjct: 260 LVLDEADRMLDMGFMPQIESLIDQIPKERQTLM------FSATWPKEVKL--LASKFLKD 311
Query: 188 PY-VTIASFDRKNLF----YGVKVINRGQSFVDELVQEILKSVAGA---GSIIVYCMTIK 239
P +T+ S + + V + + D+L+ + + + A ++IV+C
Sbjct: 312 PIKITVGSQELTGSINVTQHIVNIDDLSDLQSDDLIYDEINKILTADPTNTVIVFCNEKY 371
Query: 240 DVEEISKALK-QLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVR 298
++ L Q VK+ H + RE +LF IR+++AT G+D P V+
Sbjct: 372 KCDDFQHYLSTQKNVKSIVLHSGKDQRMRESGLKLFRDHRIRILIATDVAARGLDIPSVK 431
Query: 299 HVIHYGCPKTLESYYQESGRCGRDGIASVCWLY 331
V +Y P +E Y GR GR G W Y
Sbjct: 432 AVFNYRLPGNIEDYVHRIGRTGRAGKTGDAWSY 464
>DICTYBASE|DDB_G0270396 [details] [associations]
symbol:ddx49 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
Length = 508
Score = 164 (62.8 bits), Expect = 4.0e-09, P = 4.0e-09
Identities = 81/333 (24%), Positives = 144/333 (43%)
Query: 7 KYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL--VTGKTALVVSPLIS 64
K G+ Q + I I++ RD + TGSGK+ + +P L ++ V + +++
Sbjct: 20 KQLGFKAPSNIQANTIPEILKGRDIIASAKTGSGKTASFAIPILNQLSEDPYGVFAVILT 79
Query: 65 LMQDQVMSLKQRGINAEFLGSAQT-DSSVQTKAETGYFQLLFMTPEKACII--PISFWSK 121
++ + + ++ NA +G+ + SV Q L + I+ P S
Sbjct: 80 PTRELAVQIGEQ-FNA--IGAPMNVNCSVVIGGIDNVTQALILDKRPHIIVATPGRLASH 136
Query: 122 L---LKAGV--CLFAV-DEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKV 175
L LK + C F V DEA + G DF LE + L L +AT
Sbjct: 137 LNNGLKIALKFCKFLVLDEADRLL--GEDFELEIASI--LEHLPPPEKRQTLLFSATMTK 192
Query: 176 RIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQE-----ILKSVAGAGS 230
+ ++S+ L P++ F+ + + V + + ++ ++ ILK G+ S
Sbjct: 193 NLTKLDSIALNKPFI----FEDNSKYDTVDTLKQEYIYMPAPTKDCYLVYILKKHEGS-S 247
Query: 231 IIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGM 290
IV+ VE + L +L + + + H + K+R A + F +++V+VAT
Sbjct: 248 AIVFVNNCYAVEAVKGMLNKLDIPSVSLHSFLDQKSRLAALKTFKSGKVKVLVATDVASR 307
Query: 291 GIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
G+D PDV+ VI+Y + + Y GR R G
Sbjct: 308 GLDIPDVQIVINYKLSNSSKDYIHRVGRTARFG 340
>RGD|621743 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=NAS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:621743
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
CTD:11056 GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AB055628 IPI:IPI00201365 RefSeq:NP_445977.1 UniGene:Rn.18605
ProteinModelPortal:Q99PT0 SMR:Q99PT0 PRIDE:Q99PT0
Ensembl:ENSRNOT00000003600 GeneID:85432 KEGG:rno:85432
InParanoid:Q99PT0 NextBio:617542 Genevestigator:Q99PT0
GermOnline:ENSRNOG00000002612 Uniprot:Q99PT0
Length = 598
Score = 165 (63.1 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 77/332 (23%), Positives = 136/332 (40%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV-----TGK--TALVVSP- 61
G+ V P Q I ++ R+ L TGSGK+L + +P L+ T K ALV+SP
Sbjct: 185 GFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPTNKGFRALVISPT 244
Query: 62 --LISLMQDQVMSLKQ-RGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
L S + +++ + + G + A + + F +L TP + +
Sbjct: 245 RELASQIHRELIKISEGTGFRIHMIHKAAIAAKKFGPKSSKKFDILVTTPNRLIYLLKQE 304
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHD-FRLEYKQL------DKLRTFLLGVPFVALTATA 171
+ V VDE+ + E G FR + + K+R + F A
Sbjct: 305 PPGIDLTSVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSPKVRRAMFSATF-AYDVEQ 363
Query: 172 TEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSI 231
K+ +D I S+ + + + +++ LF G + G+ ++E++K +
Sbjct: 364 WCKLNLDNIVSVSIGARNSAVETVEQELLFVGSET---GKLLA---MRELVKKGFNP-PV 416
Query: 232 IVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMG 291
+V+ +I+ +E+ L G+ H + + R+ F +I V++ T G
Sbjct: 417 LVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARG 476
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
ID V VI+Y P + Y GR GR G
Sbjct: 477 IDFKGVNLVINYDFPTSSVEYIHRIGRTGRAG 508
>UNIPROTKB|Q9Y2R4 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AF077033 EMBL:AK001652 EMBL:AK093661 EMBL:AC091199
EMBL:BC041785 EMBL:AJ010840 IPI:IPI00032423 RefSeq:NP_008941.2
UniGene:Hs.590937 PDB:3DKP PDBsum:3DKP ProteinModelPortal:Q9Y2R4
SMR:Q9Y2R4 IntAct:Q9Y2R4 STRING:Q9Y2R4 PhosphoSite:Q9Y2R4
DMDM:296439375 SWISS-2DPAGE:Q9Y2R4 PaxDb:Q9Y2R4 PRIDE:Q9Y2R4
Ensembl:ENST00000349699 GeneID:11056 KEGG:hsa:11056 UCSC:uc002hoh.2
GeneCards:GC17M035969 HGNC:HGNC:20038 MIM:612500 neXtProt:NX_Q9Y2R4
PharmGKB:PA134904836 InParanoid:Q9Y2R4 PhylomeDB:Q9Y2R4
ChiTaRS:DDX52 EvolutionaryTrace:Q9Y2R4 GenomeRNAi:11056
NextBio:42007 ArrayExpress:Q9Y2R4 Bgee:Q9Y2R4 CleanEx:HS_DDX52
Genevestigator:Q9Y2R4 GermOnline:ENSG00000141141 Uniprot:Q9Y2R4
Length = 599
Score = 165 (63.1 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 74/332 (22%), Positives = 135/332 (40%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP-------PLVTGKTALVVSP- 61
G+ + P Q I ++ R+ L TGSGK+L + +P P G AL++SP
Sbjct: 184 GFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPT 243
Query: 62 --LISLMQDQVMSLKQ-RGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
L S + +++ + + G + A + + F +L TP + +
Sbjct: 244 RELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQD 303
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHD-FRLEYKQL------DKLRTFLLGVPFVALTATA 171
+ A V VDE+ + E G FR + + K+R + F A
Sbjct: 304 PPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATF-AYDVEQ 362
Query: 172 TEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSI 231
K+ +D + S+ + + + +++ LF G + G+ ++E++K +
Sbjct: 363 WCKLNLDNVISVSIGARNSAVETVEQELLFVGSET---GKLLA---MRELVKKGFNP-PV 415
Query: 232 IVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMG 291
+V+ +I+ +E+ L G+ H + + R+ F +I V++ T G
Sbjct: 416 LVFVQSIERAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARG 475
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
ID V VI+Y P + Y GR GR G
Sbjct: 476 IDFKGVNLVINYDFPTSSVEYIHRIGRTGRAG 507
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 163 (62.4 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 78/334 (23%), Positives = 141/334 (42%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP------PLVTGKTAL 57
TL++ G + P Q+ I I+ +D + TG+GK+L + LP P + AL
Sbjct: 19 TLREN-GITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDVQAL 77
Query: 58 VVSPLISLMQDQVMSLK----QR-GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKAC 112
+V+P L +K QR IN + Q D + Q + G ++ TP +
Sbjct: 78 IVAPTRELALQITTEIKKMLVQREDINVLAIYGGQ-DVAQQLRKLKGNTHIVVATPGR-- 134
Query: 113 IIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATAT 172
++ + + + +DEA + +G + +E LD+ + F A
Sbjct: 135 LLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIE-DILDETPGSKQTMLFSATIPKDI 193
Query: 173 EKVR---IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAG 229
+K+ +D +++++ VT+ + +++ + + FV + Q L
Sbjct: 194 KKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLA------ 247
Query: 230 SIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFG 289
+++C T ++ LK LG HG + RE + F +I+ ++AT
Sbjct: 248 --VIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305
Query: 290 MGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
G+D V HV +Y P+ +ESY GR GR G
Sbjct: 306 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAG 339
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 163 (62.4 bits), Expect = 4.1e-09, P = 4.1e-09
Identities = 78/334 (23%), Positives = 141/334 (42%)
Query: 4 TLKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP------PLVTGKTAL 57
TL++ G + P Q+ I I+ +D + TG+GK+L + LP P + AL
Sbjct: 19 TLREN-GITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPESSDVQAL 77
Query: 58 VVSPLISLMQDQVMSLK----QR-GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKAC 112
+V+P L +K QR IN + Q D + Q + G ++ TP +
Sbjct: 78 IVAPTRELALQITTEIKKMLVQREDINVLAIYGGQ-DVAQQLRKLKGNTHIVVATPGR-- 134
Query: 113 IIPISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATAT 172
++ + + + +DEA + +G + +E LD+ + F A
Sbjct: 135 LLDHIRRETIDLSNLSTIVLDEADQMLYFGFLYDIE-DILDETPGSKQTMLFSATIPKDI 193
Query: 173 EKVR---IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAG 229
+K+ +D +++++ VT+ + +++ + + FV + Q L
Sbjct: 194 KKLAKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLA------ 247
Query: 230 SIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFG 289
+++C T ++ LK LG HG + RE + F +I+ ++AT
Sbjct: 248 --VIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREAKIQYLIATDVAA 305
Query: 290 MGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
G+D V HV +Y P+ +ESY GR GR G
Sbjct: 306 RGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAG 339
>RGD|1308685 [details] [associations]
symbol:Ddx23 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 23"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005682 "U5 snRNP"
evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005886 "plasma membrane" evidence=IEA;ISO] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1308685 GO:GO:0005524
GO:GO:0003676 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CH474035 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE
RefSeq:NP_001100263.2 UniGene:Rn.2319 Ensembl:ENSRNOT00000055529
GeneID:300208 KEGG:rno:300208 NextBio:646540 Uniprot:G3V9M1
Length = 819
Score = 142 (55.0 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 35/108 (32%), Positives = 54/108 (50%)
Query: 231 IIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGM 290
II++ K + ++K+L+++G A T HG G + RE A ++VAT G
Sbjct: 666 IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGR 725
Query: 291 GIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
GID DV V++Y K +E Y GR GR G + V + + + A
Sbjct: 726 GIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSA 773
Score = 71 (30.1 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV 51
GY P Q+ I ++ RD + V TGSGK+ + +P LV
Sbjct: 409 GYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 450
>UNIPROTKB|A6QLB2 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 HOGENOM:HOG000268796
HOVERGEN:HBG102054 OMA:PIRNWKE OrthoDB:EOG46T312 EMBL:DAAA02012954
EMBL:BC147902 IPI:IPI00866828 RefSeq:NP_001095672.1
UniGene:Bt.14027 STRING:A6QLB2 Ensembl:ENSBTAT00000029071
GeneID:537395 KEGG:bta:537395 InParanoid:A6QLB2 NextBio:20877127
Uniprot:A6QLB2
Length = 820
Score = 142 (55.0 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 35/108 (32%), Positives = 54/108 (50%)
Query: 231 IIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGM 290
II++ K + ++K+L+++G A T HG G + RE A ++VAT G
Sbjct: 667 IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGR 726
Query: 291 GIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
GID DV V++Y K +E Y GR GR G + V + + + A
Sbjct: 727 GIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSA 774
Score = 71 (30.1 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV 51
GY P Q+ I ++ RD + V TGSGK+ + +P LV
Sbjct: 410 GYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 451
>UNIPROTKB|E2RTL6 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005682 GO:GO:0003676
GO:GO:0071013 GeneTree:ENSGT00690000102171 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 CTD:9416 OMA:PIRNWKE EMBL:AAEX03015077
RefSeq:XP_851051.1 ProteinModelPortal:E2RTL6
Ensembl:ENSCAFT00000013894 GeneID:477624 KEGG:cfa:477624
NextBio:20853071 Uniprot:E2RTL6
Length = 820
Score = 142 (55.0 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 35/108 (32%), Positives = 54/108 (50%)
Query: 231 IIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGM 290
II++ K + ++K+L+++G A T HG G + RE A ++VAT G
Sbjct: 667 IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGR 726
Query: 291 GIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
GID DV V++Y K +E Y GR GR G + V + + + A
Sbjct: 727 GIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSA 774
Score = 71 (30.1 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV 51
GY P Q+ I ++ RD + V TGSGK+ + +P LV
Sbjct: 410 GYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 451
>UNIPROTKB|Q9BUQ8 [details] [associations]
symbol:DDX23 "Probable ATP-dependent RNA helicase DDX23"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000375
"RNA splicing, via transesterification reactions" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=IC]
[GO:0005682 "U5 snRNP" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:AF026402 GO:GO:0005739
GO:GO:0005886 GO:GO:0005524 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0005682 GO:GO:0003676 EMBL:CH471111 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
KO:K12858 EMBL:AK312379 EMBL:BC002366 IPI:IPI00006725
RefSeq:NP_004809.2 UniGene:Hs.130098 ProteinModelPortal:Q9BUQ8
SMR:Q9BUQ8 DIP:DIP-34974N IntAct:Q9BUQ8 MINT:MINT-1572793
STRING:Q9BUQ8 PhosphoSite:Q9BUQ8 DMDM:160385708 PaxDb:Q9BUQ8
PRIDE:Q9BUQ8 DNASU:9416 Ensembl:ENST00000308025 GeneID:9416
KEGG:hsa:9416 UCSC:uc001rsm.3 CTD:9416 GeneCards:GC12M049223
HGNC:HGNC:17347 HPA:HPA038680 MIM:612172 neXtProt:NX_Q9BUQ8
PharmGKB:PA134934941 HOGENOM:HOG000268796 HOVERGEN:HBG102054
InParanoid:Q9BUQ8 OMA:PIRNWKE OrthoDB:EOG46T312 PhylomeDB:Q9BUQ8
GenomeRNAi:9416 NextBio:35278 ArrayExpress:Q9BUQ8 Bgee:Q9BUQ8
CleanEx:HS_DDX23 Genevestigator:Q9BUQ8 GermOnline:ENSG00000174243
Uniprot:Q9BUQ8
Length = 820
Score = 142 (55.0 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 35/108 (32%), Positives = 54/108 (50%)
Query: 231 IIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGM 290
II++ K + ++K+L+++G A T HG G + RE A ++VAT G
Sbjct: 667 IIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGR 726
Query: 291 GIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSNFA 338
GID DV V++Y K +E Y GR GR G + V + + + A
Sbjct: 727 GIDIQDVSMVVNYDMAKNIEDYIHRIGRTGRAGKSGVAITFLTKEDSA 774
Score = 71 (30.1 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLV 51
GY P Q+ I ++ RD + V TGSGK+ + +P LV
Sbjct: 410 GYKEPTPIQRQAIPIGLQNRDIIGVAETGSGKTAAFLIPLLV 451
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 163 (62.4 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 83/332 (25%), Positives = 138/332 (41%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP---PLVTGKT---ALVVSPLI 63
G+ V Q + I ++ RD + + TGSGK+ + LP L+ ALV++P
Sbjct: 44 GWKVPTKIQVEAIPVALQGRDIIGLAETGSGKTGAFALPILQALLDAPQRLFALVLTPTR 103
Query: 64 SL---MQDQVMSLKQR-GINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFW 119
L + +Q +L G+++ + DS Q+ A ++ TP + ++
Sbjct: 104 ELAFQISEQFEALGSSIGVHSAVIVGG-IDSMSQSLALAKKPHIIIATPGR--LVDHLEN 160
Query: 120 SKLLKAGVCLFAV-DEAHCISEWGHDFRLEYKQLDKL-----RTFLLGVPFVALTATATE 173
+K F V DEA I DF E ++ K+ +TFL +T +
Sbjct: 161 TKGFNLRALKFLVMDEADRILNM--DFETEVDKILKVIPRDRKTFLFSA---TMTKQVQK 215
Query: 174 KVRIDIINSLK--LKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSI 231
R + N +K + + Y T+ + +F K F D + IL +AG S
Sbjct: 216 LQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSK-------FKDSYLVYILNELAG-NSF 267
Query: 232 IVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMG 291
+++C T + + + L+ LG A HGQM R + F +++AT G
Sbjct: 268 MIFCSTCNNTQRTALLLRNLGFTAIPLHGQMSQNKRLGSLNKFKAKARSILLATDVASRG 327
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
+D P V VI++ P + Y GR R G
Sbjct: 328 LDIPHVDVVINFDIPTHSKDYIHRVGRTARAG 359
>RGD|1308990 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1308990
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 KO:K14776 InterPro:IPR025313 Pfam:PF13959
GeneTree:ENSGT00550000074980 CTD:1662 OrthoDB:EOG4BK536 OMA:ADKVIEP
IPI:IPI00869603 RefSeq:NP_001100290.1 UniGene:Rn.99481
Ensembl:ENSRNOT00000017683 GeneID:300710 KEGG:rno:300710
UCSC:RGD:1308990 NextBio:647348 Uniprot:D3ZBY5
Length = 874
Score = 167 (63.8 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 86/337 (25%), Positives = 139/337 (41%)
Query: 11 YSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL----------VTGKTALVVS 60
Y + QK I ++ +D L TGSGK+L + +P L G L++S
Sbjct: 89 YRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIIS 148
Query: 61 PLISLMQDQVMSLKQRGINAEF-LGSAQTDSSVQTKAET-GYFQLLFMTPEKACII---P 115
P L L++ G N +F G ++ +AE +L TP +
Sbjct: 149 PTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDET 208
Query: 116 ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLE--YKQLDKLRTFLLGVPFVALTATATE 173
I F + L+ + +DEA I + G + + L K R LL +AT T+
Sbjct: 209 ICFHATNLQ----MLVLDEADRILDMGFADTMNAIIENLPKKRQTLL------FSATQTK 258
Query: 174 KVRIDIINSLKLKNP-YVTIASFDRKNLFYGVKVINRGQSFVDELVQEI------LKSVA 226
V+ D+ L LK+P YV + + Y + EL Q+I L+S
Sbjct: 259 SVK-DLAR-LSLKDPEYVWV----HEKAKYSTPATLEQNYIICELHQKISVLFSFLRSHL 312
Query: 227 GAGSIIVYCMTIKDVEEISKALKQL--GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVA 284
SI+ + + K+V+ + + +L G+ HG+ R E + F+R V+ A
Sbjct: 313 TKKSIVFFS-SCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRAAVLFA 371
Query: 285 TMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGR 321
T G+D P V V+ + CP+ +Y +GR R
Sbjct: 372 TDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTAR 408
>MGI|MGI:1924841 [details] [associations]
symbol:Ddx10 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 10"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1924841 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14776 InterPro:IPR025313 Pfam:PF13959 HOGENOM:HOG000268801
GeneTree:ENSGT00550000074980 CTD:1662 HOVERGEN:HBG102756
OrthoDB:EOG4BK536 OMA:ADKVIEP ChiTaRS:DDX10 EMBL:BC049261
IPI:IPI00896604 RefSeq:NP_084212.2 UniGene:Mm.133560
ProteinModelPortal:Q80Y44 SMR:Q80Y44 STRING:Q80Y44
PhosphoSite:Q80Y44 PaxDb:Q80Y44 PRIDE:Q80Y44
Ensembl:ENSMUST00000065630 GeneID:77591 KEGG:mmu:77591
UCSC:uc009plz.2 InParanoid:Q80Y44 NextBio:347162 Bgee:Q80Y44
CleanEx:MM_DDX10 Genevestigator:Q80Y44
GermOnline:ENSMUSG00000053289 Uniprot:Q80Y44
Length = 875
Score = 167 (63.8 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 86/337 (25%), Positives = 139/337 (41%)
Query: 11 YSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL----------VTGKTALVVS 60
Y + QK I ++ +D L TGSGK+L + +P L G L++S
Sbjct: 89 YRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIIS 148
Query: 61 PLISLMQDQVMSLKQRGINAEF-LGSAQTDSSVQTKAET-GYFQLLFMTPEKACII---P 115
P L L++ G N +F G ++ +AE +L TP +
Sbjct: 149 PTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDET 208
Query: 116 ISFWSKLLKAGVCLFAVDEAHCISEWGHDFRLE--YKQLDKLRTFLLGVPFVALTATATE 173
I F + L+ + +DEA I + G + + L K R LL +AT T+
Sbjct: 209 ICFHATNLQ----MLVLDEADRILDMGFADTMNAIIENLPKKRQTLL------FSATQTK 258
Query: 174 KVRIDIINSLKLKNP-YVTIASFDRKNLFYGVKVINRGQSFVDELVQEI------LKSVA 226
V+ D+ L LK+P YV + + Y + EL Q+I L+S
Sbjct: 259 SVK-DLAR-LSLKDPEYVWV----HEKAKYSTPATLEQNYIICELHQKISVLFSFLRSHL 312
Query: 227 GAGSIIVYCMTIKDVEEISKALKQL--GVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVA 284
SI+ + + K+V+ + + +L G+ HG+ R E + F+R V+ A
Sbjct: 313 KKKSIVFFS-SCKEVQYLYRVFCRLRPGISILALHGRQQQMRRMEVYNEFVRKRAAVLFA 371
Query: 285 TMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGR 321
T G+D P V V+ + CP+ +Y +GR R
Sbjct: 372 TDIAARGLDFPAVNWVLQFDCPEDANTYIHRAGRTAR 408
>UNIPROTKB|E2RPT4 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00680000100003
EMBL:AAEX03002786 Ensembl:ENSCAFT00000038045 Uniprot:E2RPT4
Length = 687
Score = 155 (59.6 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 37/117 (31%), Positives = 60/117 (51%)
Query: 217 LVQEILKSVAGA-GSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFI 275
++ ++L+ +G+ G I++C T K+V E++ + A HG + RE + F
Sbjct: 379 VIGDVLQVYSGSEGRAIIFCETKKNVTEMAMN-PHIKQNAQCLHGDIAQSQREITLKGFR 437
Query: 276 RDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYY 332
+V+VAT G+D P+V VI P+ +ESY SGR GR G +C +Y
Sbjct: 438 EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFY 494
Score = 54 (24.1 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP 48
L K G S P Q + E +D + TG+GK+ + +P
Sbjct: 153 LLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIP 196
Score = 38 (18.4 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 40 GKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQ 75
GK L Q TGKT PLI +Q ++K+
Sbjct: 176 GKDLIAQART-GTGKTFSFAIPLIERLQRNQETIKK 210
>UNIPROTKB|F1NQA6 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 EMBL:AADN02025730
IPI:IPI00822952 Ensembl:ENSGALT00000039070 ArrayExpress:F1NQA6
Uniprot:F1NQA6
Length = 603
Score = 164 (62.8 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 78/332 (23%), Positives = 128/332 (38%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP-------PLVTGKTALVVSP- 61
G+ V P Q I ++ R+ L TGSGK+L + +P P+ G AL++SP
Sbjct: 178 GFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFCIPLLTHLKQPMNKGFRALIISPT 237
Query: 62 --LISLMQDQVMSLKQ-RGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISF 118
L S +++ L G + A + + F +L TP + +
Sbjct: 238 RELASQTHRELVKLADGTGFRIHMIQKASEAAKKFGPKSSRKFDILVTTPNRLIYLLKQD 297
Query: 119 WSKLLKAGVCLFAVDEAHCISEWGHD-FRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
+ V VDE+ + E G FR QL + FL V A +
Sbjct: 298 PPAIDLTSVEWLVVDESDKLFEDGKSGFR---DQLASI--FLACTSHVVRRAFFSATFAH 352
Query: 178 DIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDE------LVQEILKSVAGAGSI 231
D+ KL + + S +N + + + FV ++E++K A +
Sbjct: 353 DVEEWCKLNLDSIVLVSVGARNS--AAETVEQELLFVGSETGKLTAMRELVKK-GFAPPV 409
Query: 232 IVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMG 291
+V+ +I+ +E+ L G+ H + R+ F +I V++ T G
Sbjct: 410 LVFVQSIERAKELFHELIYEGINVDVIHADKTQQQRDNVVHSFRAGKIWVLICTALLARG 469
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
ID V VI+Y P + Y GR GR G
Sbjct: 470 IDFKGVNMVINYDLPTSAVEYIHRIGRTGRAG 501
>UNIPROTKB|E1C4M1 [details] [associations]
symbol:DDX52 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074863 OMA:NVMKQSG
EMBL:AADN02025730 IPI:IPI00593921 ProteinModelPortal:E1C4M1
Ensembl:ENSGALT00000008815 ArrayExpress:E1C4M1 Uniprot:E1C4M1
Length = 604
Score = 164 (62.8 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 78/333 (23%), Positives = 129/333 (38%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP-------PLVTGKTALVVSP- 61
G+ V P Q I ++ R+ L TGSGK+L + +P P+ G AL++SP
Sbjct: 178 GFQVPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFCIPLLTHLKQPMNKGFRALIISPT 237
Query: 62 --LISLMQDQVMSLKQ-RGINAEFLGSA-QTDSSVQTKAETGYFQLLFMTPEKACIIPIS 117
L S +++ L G + A + K+ + +L TP + +
Sbjct: 238 RELASQTHRELVKLADGTGFRIHMIQKASEAAKKFGPKSSRKFVDILVTTPNRLIYLLKQ 297
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHD-FRLEYKQLDKLRTFLLGVPFVALTATATEKVR 176
+ V VDE+ + E G FR QL + FL V A +
Sbjct: 298 DPPAIDLTSVEWLVVDESDKLFEDGKSGFR---DQLASI--FLACTSHVVRRAFFSATFA 352
Query: 177 IDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDE------LVQEILKSVAGAGS 230
D+ KL + + S +N + + + FV ++E++K A
Sbjct: 353 HDVEEWCKLNLDSIVLVSVGARNS--AAETVEQELLFVGSETGKLTAMRELVKK-GFAPP 409
Query: 231 IIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGM 290
++V+ +I+ +E+ L G+ H + R+ F +I V++ T
Sbjct: 410 VLVFVQSIERAKELFHELIYEGINVDVIHADKTQQQRDNVVHSFRAGKIWVLICTALLAR 469
Query: 291 GIDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
GID V VI+Y P + Y GR GR G
Sbjct: 470 GIDFKGVNMVINYDLPTSAVEYIHRIGRTGRAG 502
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 163 (62.4 bits), Expect = 5.7e-09, P = 5.7e-09
Identities = 78/322 (24%), Positives = 136/322 (42%)
Query: 16 PYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPLVT------GKTALVVSPLISL---M 66
P Q + I +E +D + + TGSGK+ + +P L + ALV++P L +
Sbjct: 148 PIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWHAQQPYFALVLAPTRELTFQI 207
Query: 67 QDQVMSL-KQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKA 125
+D +L G+ + + D Q + ++ TP + + +
Sbjct: 208 KDTFDALGSSMGLRSSCIVGGM-DMMDQARDLMRKPHVIVATPGRI-MDHLEHTKGFSLK 265
Query: 126 GVCLFAVDEAHCISEWGHDFRLEYKQLDK-LRTFLLGVPFVALTATATEKVRIDIINSLK 184
+ +DEA + + DF LDK L+ + +AT T K I+ +
Sbjct: 266 NLKYLVMDEADRLLDM--DFG---PALDKILKVIPIKRTTYLFSATMTNK--IEKLQRAS 318
Query: 185 LKNPY-VTIASFDRK--NLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVYCMTIKDV 241
L NP V ++S + NL + ++N G + + ++ +L G SIIV+ T+
Sbjct: 319 LHNPVRVAVSSKYQTADNLVQSMMLVNDG--YKNTILIHLLNEFMGK-SIIVFTRTVAHA 375
Query: 242 EEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDKPDVRHVI 301
+ + + LG A HGQ+ R + F ++ ++VAT G+D P V VI
Sbjct: 376 QRTALLARILGFNAVPLHGQLSQSQRLGSLNKFKSNQANILVATDVAARGLDIPSVDVVI 435
Query: 302 HYGCPKTLESYYQESGRCGRDG 323
+Y P ++Y GR R G
Sbjct: 436 NYDIPTDSKAYIHRVGRTARAG 457
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 162 (62.1 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 77/329 (23%), Positives = 151/329 (45%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP--PLVTGKT----ALVVSPLI 63
GY Q +VI ++K+D +V TGSGK+ + +P +V + ALV++P
Sbjct: 23 GYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTR 82
Query: 64 SL---MQDQVMSLKQ-RGINAEFL-GSAQ-TDSSVQTKAETGYFQLLFMTPEKACIIPIS 117
L +++ + ++ + + I A + G + ++ K +T ++ TP + + I
Sbjct: 83 ELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKT---HIVVGTPGRV-LDHIE 138
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
+ L+ + +DEA + G ++E +D+L T + + F A E++
Sbjct: 139 KGTLSLER-LKYLVIDEADEMLNMGFIDQVE-AIIDELPTKRMTMLFSATLPEDVERLSR 196
Query: 178 DIINS---LKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVY 234
+N+ +++K +T + LF + + L++++ ++ S I++
Sbjct: 197 TYMNAPTHIEIKAAGITTDKIEH-TLFE----VREEEKL--SLLKDVT-TIENPDSCIIF 248
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C T ++V+ + + L ++ HG M + R F + + R +VAT GID
Sbjct: 249 CRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDI 308
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDG 323
++ HVI+Y P ESY +GR GR G
Sbjct: 309 DNITHVINYDIPLEKESYVHRTGRTGRAG 337
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 162 (62.1 bits), Expect = 6.1e-09, P = 6.1e-09
Identities = 77/329 (23%), Positives = 151/329 (45%)
Query: 10 GYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP--PLVTGKT----ALVVSPLI 63
GY Q +VI ++K+D +V TGSGK+ + +P +V + ALV++P
Sbjct: 23 GYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTR 82
Query: 64 SL---MQDQVMSLKQ-RGINAEFL-GSAQ-TDSSVQTKAETGYFQLLFMTPEKACIIPIS 117
L +++ + ++ + + I A + G + ++ K +T ++ TP + + I
Sbjct: 83 ELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELKQKT---HIVVGTPGRV-LDHIE 138
Query: 118 FWSKLLKAGVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRI 177
+ L+ + +DEA + G ++E +D+L T + + F A E++
Sbjct: 139 KGTLSLER-LKYLVIDEADEMLNMGFIDQVE-AIIDELPTKRMTMLFSATLPEDVERLSR 196
Query: 178 DIINS---LKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGAGSIIVY 234
+N+ +++K +T + LF + + L++++ ++ S I++
Sbjct: 197 TYMNAPTHIEIKAAGITTDKIEH-TLFE----VREEEKL--SLLKDVT-TIENPDSCIIF 248
Query: 235 CMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGIDK 294
C T ++V+ + + L ++ HG M + R F + + R +VAT GID
Sbjct: 249 CRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLVATDVAARGIDI 308
Query: 295 PDVRHVIHYGCPKTLESYYQESGRCGRDG 323
++ HVI+Y P ESY +GR GR G
Sbjct: 309 DNITHVINYDIPLEKESYVHRTGRTGRAG 337
>UNIPROTKB|E2QTT0 [details] [associations]
symbol:DDX50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00680000100003 OMA:GDTEEGC EMBL:AAEX03002786
Ensembl:ENSCAFT00000021867 NextBio:20898308 Uniprot:E2QTT0
Length = 738
Score = 155 (59.6 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 37/117 (31%), Positives = 60/117 (51%)
Query: 217 LVQEILKSVAGA-GSIIVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFI 275
++ ++L+ +G+ G I++C T K+V E++ + A HG + RE + F
Sbjct: 378 VIGDVLQVYSGSEGRAIIFCETKKNVTEMAMN-PHIKQNAQCLHGDIAQSQREITLKGFR 436
Query: 276 RDEIRVMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYY 332
+V+VAT G+D P+V VI P+ +ESY SGR GR G +C +Y
Sbjct: 437 EGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFY 493
Score = 54 (24.1 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 5 LKKYFGYSVFRPYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLP 48
L K G S P Q + E +D + TG+GK+ + +P
Sbjct: 152 LLKGRGVSYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIP 195
Score = 38 (18.4 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 40 GKSLCYQLPPLVTGKTALVVSPLISLMQDQVMSLKQ 75
GK L Q TGKT PLI +Q ++K+
Sbjct: 175 GKDLIAQART-GTGKTFSFAIPLIERLQRNQETIKK 209
>UNIPROTKB|Q8EI96 [details] [associations]
symbol:srmB "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 139 (54.0 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 31/92 (33%), Positives = 46/92 (50%)
Query: 232 IVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMG 291
IV+ T V + L Q G+ G M K R +A F + E+ V++AT G
Sbjct: 249 IVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLLATDVAARG 308
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
ID D+ HVI++ P++ ++Y GR GR G
Sbjct: 309 IDIDDISHVINFDMPRSADTYIHRIGRTGRAG 340
Score = 64 (27.6 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 32/139 (23%), Positives = 60/139 (43%)
Query: 18 QKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL---------VTGKT-ALVVSP---LIS 64
Q++ + +E+RD L TG+GK+ + LP L +G+ L+++P L S
Sbjct: 28 QQETLPHALEQRDILARAPTGTGKTASFLLPALQHLIDFPRRYSGQARVLILTPTRELAS 87
Query: 65 LMQDQVMSLK-QRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLL 123
+ L +G+N + + + Q +A G +L TP + ++ K
Sbjct: 88 QIHRYACHLATDQGLNIAII-TGGVPYAPQEEALKGNIDILVATPGR--LMEYLDKGKFS 144
Query: 124 KAGVCLFAVDEAHCISEWG 142
V + +DEA + + G
Sbjct: 145 AESVDILIIDEADRMLDMG 163
>TIGR_CMR|SO_0947 [details] [associations]
symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 139 (54.0 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 31/92 (33%), Positives = 46/92 (50%)
Query: 232 IVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMG 291
IV+ T V + L Q G+ G M K R +A F + E+ V++AT G
Sbjct: 249 IVFVKTRDVVSSLEGQLLQAGIPCAFMRGDMEQKKRFQALSRFTKGEVNVLLATDVAARG 308
Query: 292 IDKPDVRHVIHYGCPKTLESYYQESGRCGRDG 323
ID D+ HVI++ P++ ++Y GR GR G
Sbjct: 309 IDIDDISHVINFDMPRSADTYIHRIGRTGRAG 340
Score = 64 (27.6 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 32/139 (23%), Positives = 60/139 (43%)
Query: 18 QKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL---------VTGKT-ALVVSP---LIS 64
Q++ + +E+RD L TG+GK+ + LP L +G+ L+++P L S
Sbjct: 28 QQETLPHALEQRDILARAPTGTGKTASFLLPALQHLIDFPRRYSGQARVLILTPTRELAS 87
Query: 65 LMQDQVMSLK-QRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLL 123
+ L +G+N + + + Q +A G +L TP + ++ K
Sbjct: 88 QIHRYACHLATDQGLNIAII-TGGVPYAPQEEALKGNIDILVATPGR--LMEYLDKGKFS 144
Query: 124 KAGVCLFAVDEAHCISEWG 142
V + +DEA + + G
Sbjct: 145 AESVDILIIDEADRMLDMG 163
>UNIPROTKB|G5E631 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654
OMA:KYERGGN EMBL:DAAA02073612 RefSeq:NP_001179891.1 UniGene:Bt.9783
PRIDE:G5E631 Ensembl:ENSBTAT00000050399 GeneID:510093
KEGG:bta:510093 NextBio:20869274 Uniprot:G5E631
Length = 661
Score = 135 (52.6 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 33/116 (28%), Positives = 53/116 (45%)
Query: 222 LKSVAGAGSI-IVYCMTIKDVEEISKALKQLGVKAGTYHGQMGSKAREEAHRLFIRDEIR 280
L + G S+ +V+ T K + + L G + HG + REEA F +
Sbjct: 433 LLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 492
Query: 281 VMVATMAFGMGIDKPDVRHVIHYGCPKTLESYYQESGRCGRDGIASVCWLYYARSN 336
++VAT G+D +V+HVI++ P +E Y GR GR G + ++ N
Sbjct: 493 ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERN 548
Score = 74 (31.1 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 16 PYQKDVIQRIIEKRDCLVVMATGSGKSLCYQLPPL 50
P QK I I EKRD + TGSGK+ + LP L
Sbjct: 204 PVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPIL 238
WARNING: HSPs involving 440 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.137 0.407 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 374 374 0.00087 117 3 11 22 0.47 33
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 690
No. of states in DFA: 610 (65 KB)
Total size of DFA: 236 KB (2129 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 31.94u 0.10s 32.04t Elapsed: 00:00:02
Total cpu time: 32.02u 0.10s 32.12t Elapsed: 00:00:02
Start: Tue May 21 02:05:15 2013 End: Tue May 21 02:05:17 2013
WARNINGS ISSUED: 2